Citrus Sinensis ID: 029437

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
Protein Sequence
MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK
Secondary Structure (PSIPRED)
cccHHHHHHHHHHccccccEEEEEEEEcccccHHHHHHHHcccccccccccccccEEEEEEccEEEEEEEccccHHHHccHHHHcccccEEEEEEEccccccHHHHHHHHHHHccccccccccEEEEEccccccccccHHHHHHHccccccccccccccccccccccEEEEEccccccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHcccccccccccEEEEEEEEccEEEEEEEEcccHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHHccHHHcccEEEEEEEcccccccccHHHHHHHHcHHHcccccccccccccccccEEEEEEEEEccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMlkderlvqhqptqyptseelsigkikfkafdlGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLsdealanvpflvlgnkidipyaasEEELRYHlglsnfttgkgkvnladsnvrplEVFMCSIVrkmgygdgFKWLSQYIK
Flexible Loop (DISEMBL)
MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPtqyptseelsiGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLsnfttgkgkvnladsnvrpLEVFMCSIVRKMGYGDGFKWLSQYIK
Low Complexity Region (SEG)
MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWkdyyakvdavvylvdaydkERFAESKKeldallsdealaNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK
Disordered region (IsUnstruct)
*FLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ*TQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY**
Disordered Region (DISOPRED)
MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK
Disordered Region (DISEMBL)
MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK
Disordered Region (DISPRO)
MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	193	2.2.26 [Sep-21-2011]
O04834	193	GTP-binding protein SAR1A	yes	no	1.0	1.0	0.948	1e-106
O04266	193	GTP-binding protein SAR1A	N/A	no	1.0	1.0	0.943	1e-105
Q01474	193	GTP-binding protein SAR1B	no	no	0.994	0.994	0.937	1e-104
O04267	195	GTP-binding protein SAR1B	N/A	no	0.994	0.984	0.917	1e-101
P52884	193	GTP-binding protein SAR2	N/A	no	1.0	1.0	0.880	1e-100
P52885	198	GTP-binding protein SAR1	N/A	no	1.0	0.974	0.772	4e-83
Q4P0I7	189	Small COPII coat GTPase S	N/A	no	0.979	1.0	0.661	2e-71
P0CR30	189	Small COPII coat GTPase S	yes	no	0.979	1.0	0.666	1e-70
P0CR31	189	Small COPII coat GTPase S	N/A	no	0.979	1.0	0.666	1e-70
Q6CB54	190	Small COPII coat GTPase S	yes	no	0.984	1.0	0.661	3e-70

>sp|O04834|SAR1A_ARATH GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1

 Score =  384 bits (987), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/193 (94%), Positives = 192/193 (99%)

Query: 1   MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
           MF++DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELS
Sbjct: 1   MFMIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60

Query: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120
           IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDE+LA
Sbjct: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLA 120

Query: 121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
           +VPFL+LGNKIDIPYAASE+ELRYHLGLSNFTTGKGKVNL DSNVRPLEVFMCSIVRKMG
Sbjct: 121 SVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMG 180

Query: 181 YGDGFKWLSQYIK 193
           YG+GFKW+SQYIK
Sbjct: 181 YGEGFKWVSQYIK 193

Involved in transport from the endoplasmic reticulum to the Golgi apparatus.
Arabidopsis thaliana (taxid: 3702)

>sp|O04266|SAR1A_BRACM GTP-binding protein SAR1A OS=Brassica campestris GN=SAR1A PE=2 SV=1

 Score =  379 bits (973), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/193 (94%), Positives = 190/193 (98%)

Query: 1   MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
           MF++DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELS
Sbjct: 1   MFVIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60

Query: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120
           IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDE+LA
Sbjct: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLA 120

Query: 121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
            VPFL+LGNKIDIPYAASE+ELRYHLGLSNFTTGKGKV+L  SNVRPLEVFMCSIVRKMG
Sbjct: 121 TVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVDLVGSNVRPLEVFMCSIVRKMG 180

Query: 181 YGDGFKWLSQYIK 193
           YG+GFKWLSQYIK
Sbjct: 181 YGEGFKWLSQYIK 193

Involved in transport from the endoplasmic reticulum to the Golgi apparatus.

Brassica campestris (taxid: 3711)

>sp|Q01474|SAR1B_ARATH GTP-binding protein SAR1B OS=Arabidopsis thaliana GN=SAR1B PE=2 SV=1

 Score =  377 bits (967), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/192 (93%), Positives = 187/192 (97%)

Query: 1   MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
           MFL DWFYG+LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELS
Sbjct: 1   MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60

Query: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120
           IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESK+ELDALLSDEALA
Sbjct: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKRELDALLSDEALA 120

Query: 121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
            VPFL+LGNKIDIPYAASE+ELRYHLGL+NFTTGKGKV L DS VRPLEVFMCSIVRKMG
Sbjct: 121 TVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVTLGDSGVRPLEVFMCSIVRKMG 180

Query: 181 YGDGFKWLSQYI 192
           YG+GFKWLSQYI
Sbjct: 181 YGEGFKWLSQYI 192

Involved in transport from the endoplasmic reticulum to the Golgi apparatus.

Arabidopsis thaliana (taxid: 3702)

>sp|O04267|SAR1B_BRACM GTP-binding protein SAR1B OS=Brassica campestris GN=SAR1B PE=2 SV=1

 Score =  367 bits (941), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/194 (91%), Positives = 186/194 (95%), Gaps = 2/194 (1%)

Query: 1   MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
           MFL DWFYG+LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELS
Sbjct: 1   MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60

Query: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120
           IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERF+ESKKELDALLSD+ALA
Sbjct: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFSESKKELDALLSDDALA 120

Query: 121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLA--DSNVRPLEVFMCSIVRK 178
            VPFL+LGNKID PYAASE+ELRYHLGL+NFTTGKGKV  A  DS VRPLEVFMCSIVRK
Sbjct: 121 TVPFLILGNKIDNPYAASEDELRYHLGLTNFTTGKGKVTTAGGDSGVRPLEVFMCSIVRK 180

Query: 179 MGYGDGFKWLSQYI 192
           MGYG+GFKWLSQYI
Sbjct: 181 MGYGEGFKWLSQYI 194

Involved in transport from the endoplasmic reticulum to the Golgi apparatus.

Brassica campestris (taxid: 3711)

>sp|P52884|SAR2_SOLLC GTP-binding protein SAR2 OS=Solanum lycopersicum GN=SAR2 PE=2 SV=1

 Score =  362 bits (930), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 170/193 (88%), Positives = 184/193 (95%)

Query: 1   MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
           MFL+DWFYGVLASLGLWQK+AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS
Sbjct: 1   MFLVDWFYGVLASLGLWQKDAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60

Query: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120
           IG IKFKAFDLGGHQIARRVW+DYYAKVDAVVYLVDA D+ERF E+KKELD LLSDE+L 
Sbjct: 61  IGNIKFKAFDLGGHQIARRVWRDYYAKVDAVVYLVDANDRERFPEAKKELDGLLSDESLT 120

Query: 121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
           NVPFL+LGNKIDIPYAASE+ELRYHLGL+  TTGKG +NLA +NVRP+EVFMCSIVRKMG
Sbjct: 121 NVPFLILGNKIDIPYAASEDELRYHLGLTGVTTGKGNINLAGTNVRPIEVFMCSIVRKMG 180

Query: 181 YGDGFKWLSQYIK 193
           YG+GFKW+SQYIK
Sbjct: 181 YGEGFKWMSQYIK 193

Involved in transport from the endoplasmic reticulum to the Golgi apparatus.

Solanum lycopersicum (taxid: 4081)

>sp|P52885|SAR1_TOBAC GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1

 Score =  307 bits (786), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 153/198 (77%), Positives = 171/198 (86%), Gaps = 5/198 (2%)

Query: 1   MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
           MFL+DWFYG+LA+LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS
Sbjct: 1   MFLVDWFYGILATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60

Query: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120
           IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD++DKERFAESKKELDALLS  +  
Sbjct: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDSFDKERFAESKKELDALLSGWSSL 120

Query: 121 NVPFLVLGN---KIDIPYAA-SEEELRYHLGLSNFTT-GKGKVNLADSNVRPLEVFMCSI 175
              FL L N   +I+ P     +   RYH+G +  +   +GKVNLADSNVRP+EVFMCSI
Sbjct: 121 AHCFLFLDNWVTRIEHPICCLRKMNWRYHMGANGASPLARGKVNLADSNVRPVEVFMCSI 180

Query: 176 VRKMGYGDGFKWLSQYIK 193
           VR+MGYG+GF+W+SQYIK
Sbjct: 181 VRQMGYGEGFRWMSQYIK 198

Involved in transport from the endoplasmic reticulum to the Golgi apparatus.

Nicotiana tabacum (taxid: 4097)

>sp|Q4P0I7|SAR1_USTMA Small COPII coat GTPase SAR1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SAR1 PE=3 SV=1

 Score =  268 bits (685), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 127/192 (66%), Positives = 158/192 (82%), Gaps = 3/192 (1%)

Query: 1   MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
           MF+++WF+ +LA LGL  K AKILFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+
Sbjct: 1   MFIINWFWDILAQLGLAHKNAKILFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELA 60

Query: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120
           IG++KF  +DLGGHQ ARR+WKDY+ +VD +V+LVD  D ERFAE++ ELDALLS E L+
Sbjct: 61  IGQVKFTTYDLGGHQQARRLWKDYFPEVDGIVFLVDTQDHERFAEARAELDALLSIEELS 120

Query: 121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
           +VPFL+LGNKID P A SEEELR  +GL   TTGKGKV L D  +RP+E+FMCS+V + G
Sbjct: 121 SVPFLILGNKIDAPGAVSEEELRQAIGLYQ-TTGKGKVPLKD--IRPIEIFMCSVVMRQG 177

Query: 181 YGDGFKWLSQYI 192
           YG+GF+W+SQYI
Sbjct: 178 YGEGFRWISQYI 189

Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. SAR1 controls the coat assembly in a stepwise manner. Activated SAR1-GTP binds to membranes first and recruits the SEC23/24 complex. These SEC23/24-SAR1 prebudding intermediates are then collected by the SEC13/31 complex as subunits polymerize to form coated transport vesicles. Conversion to SAR1-GDP triggers coat release and recycles COPII subunits.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|P0CR30|SAR1_CRYNJ Small COPII coat GTPase SAR1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=SAR1 PE=3 SV=1

 Score =  265 bits (678), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 128/192 (66%), Positives = 158/192 (82%), Gaps = 3/192 (1%)

Query: 1   MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
           MF+++WF+ VLASLGL  K AK+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+
Sbjct: 1   MFIINWFWDVLASLGLMNKSAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELA 60

Query: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120
           IG +KF  +DLGGH  ARR+W+DY+ +VD +V+LVD+ D ERFAESK ELD+LLS E+LA
Sbjct: 61  IGNVKFTTYDLGGHIQARRLWRDYFPEVDGIVFLVDSADAERFAESKAELDSLLSIESLA 120

Query: 121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
            VPFL+LGNKID   A SEE+LR+ LGL   TTGKGK+ L D  +RP+EVFMCS+V + G
Sbjct: 121 QVPFLILGNKIDAYGAVSEEQLRHELGLYQ-TTGKGKIPLRD--IRPIEVFMCSVVMRQG 177

Query: 181 YGDGFKWLSQYI 192
           YG+GF+WLSQYI
Sbjct: 178 YGEGFRWLSQYI 189

Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. SAR1 controls the coat assembly in a stepwise manner. Activated SAR1-GTP binds to membranes first and recruits the SEC23/24 complex. These SEC23/24-SAR1 prebudding intermediates are then collected by the SEC13/31 complex as subunits polymerize to form coated transport vesicles. Conversion to SAR1-GDP triggers coat release and recycles COPII subunits.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|P0CR31|SAR1_CRYNB Small COPII coat GTPase SAR1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=SAR1 PE=3 SV=1

 Score =  265 bits (678), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 128/192 (66%), Positives = 158/192 (82%), Gaps = 3/192 (1%)

Query: 1   MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
           MF+++WF+ VLASLGL  K AK+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+
Sbjct: 1   MFIINWFWDVLASLGLMNKSAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELA 60

Query: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120
           IG +KF  +DLGGH  ARR+W+DY+ +VD +V+LVD+ D ERFAESK ELD+LLS E+LA
Sbjct: 61  IGNVKFTTYDLGGHIQARRLWRDYFPEVDGIVFLVDSADAERFAESKAELDSLLSIESLA 120

Query: 121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
            VPFL+LGNKID   A SEE+LR+ LGL   TTGKGK+ L D  +RP+EVFMCS+V + G
Sbjct: 121 QVPFLILGNKIDAYGAVSEEQLRHELGLYQ-TTGKGKIPLRD--IRPIEVFMCSVVMRQG 177

Query: 181 YGDGFKWLSQYI 192
           YG+GF+WLSQYI
Sbjct: 178 YGEGFRWLSQYI 189

Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. SAR1 controls the coat assembly in a stepwise manner. Activated SAR1-GTP binds to membranes first and recruits the SEC23/24 complex. These SEC23/24-SAR1 prebudding intermediates are then collected by the SEC13/31 complex as subunits polymerize to form coated transport vesicles. Conversion to SAR1-GDP triggers coat release and recycles COPII subunits.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q6CB54|SAR1_YARLI Small COPII coat GTPase SAR1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SAR1 PE=3 SV=1

 Score =  264 bits (674), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 127/192 (66%), Positives = 154/192 (80%), Gaps = 2/192 (1%)

Query: 1   MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
           M++++WFY VL+SLGLW K AK+LFLGLDNAGKTTLLHMLK++R+    PT +PTSEELS
Sbjct: 1   MWIVNWFYDVLSSLGLWNKNAKLLFLGLDNAGKTTLLHMLKNDRMAVSNPTVHPTSEELS 60

Query: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120
           IG  KF  FDLGGH  ARRVWKDY+ +V+ +V+LVDA D  RFAESK ELD+LL+ E L 
Sbjct: 61  IGNCKFTTFDLGGHIQARRVWKDYFPEVNGIVFLVDAADPTRFAESKAELDSLLAIEQLK 120

Query: 121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
            VPFL+LGNKID+P A SE EL+  LGL   TTGKGKV L + N+RP+E+FMCSIV + G
Sbjct: 121 TVPFLILGNKIDMPQAVSELELKDALGLYQ-TTGKGKVPL-EGNIRPIEIFMCSIVMRQG 178

Query: 181 YGDGFKWLSQYI 192
           YGDG +WLSQY+
Sbjct: 179 YGDGIRWLSQYV 190

Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. SAR1 controls the coat assembly in a stepwise manner. Activated SAR1-GTP binds to membranes first and recruits the SEC23/24 complex. These SEC23/24-SAR1 prebudding intermediates are then collected by the SEC13/31 complex as subunits polymerize to form coated transport vesicles. Conversion to SAR1-GDP triggers coat release and recycles COPII subunits.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
225437537	193	PREDICTED: GTP-binding protein SAR1A [Vi	1.0	1.0	0.984	1e-107
359487540	193	PREDICTED: LOW QUALITY PROTEIN: GTP-bind	1.0	1.0	0.984	1e-107
255548481	193	GTP-binding protein sar1, putative [Rici	1.0	1.0	0.974	1e-106
449436425	193	PREDICTED: GTP-binding protein SAR1A-lik	1.0	1.0	0.968	1e-106
255556330	193	GTP-binding protein sar1, putative [Rici	1.0	1.0	0.974	1e-106
297814115	193	Os01g0254000 [Arabidopsis lyrata subsp.	1.0	1.0	0.963	1e-105
413948065	300	GTP-binding protein SAR1A [Zea mays]	1.0	0.643	0.958	1e-105
351722829	193	uncharacterized protein LOC100305650 [Gl	1.0	1.0	0.953	1e-105
449469040	193	PREDICTED: GTP-binding protein SAR1A-lik	1.0	1.0	0.953	1e-105
226496333	193	uncharacterized protein LOC100279736 [Ze	1.0	1.0	0.958	1e-105

>gi|225437537|ref|XP_002275765.1| PREDICTED: GTP-binding protein SAR1A [Vitis vinifera] gi|297743967|emb|CBI36937.3| unnamed protein product [Vitis vinifera]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/193 (98%), Positives = 193/193 (100%)

Query: 1   MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
           MF+LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS
Sbjct: 1   MFILDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60

Query: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120
           IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA
Sbjct: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120

Query: 121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
           NVPFLVLGNKIDIPYAASE+ELRYHLGL+NFTTGKGKVNLADSNVRPLEVFMCSIVRKMG
Sbjct: 121 NVPFLVLGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180

Query: 181 YGDGFKWLSQYIK 193
           YGDGFKWLSQYIK
Sbjct: 181 YGDGFKWLSQYIK 193

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487540|ref|XP_003633611.1| PREDICTED: LOW QUALITY PROTEIN: GTP-binding protein SAR1A-like [Vitis vinifera]

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/193 (98%), Positives = 193/193 (100%)

Query: 1   MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
           MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS
Sbjct: 1   MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60

Query: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120
           IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA
Sbjct: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120

Query: 121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
           NVPFLVLGNKIDIPYAASE+ELRYHLGL+NFTTGKGKV+LADSNVRPLEVFMCSIVRKMG
Sbjct: 121 NVPFLVLGNKIDIPYAASEDELRYHLGLTNFTTGKGKVSLADSNVRPLEVFMCSIVRKMG 180

Query: 181 YGDGFKWLSQYIK 193
           YGDGFKWLSQYIK
Sbjct: 181 YGDGFKWLSQYIK 193

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548481|ref|XP_002515297.1| GTP-binding protein sar1, putative [Ricinus communis] gi|223545777|gb|EEF47281.1| GTP-binding protein sar1, putative [Ricinus communis]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/193 (97%), Positives = 192/193 (99%)

Query: 1   MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
           MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS
Sbjct: 1   MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60

Query: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120
           IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA
Sbjct: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120

Query: 121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
           NVPFL+LGNKIDIPYAASE+ELRYHLGL+NFTTGKGKVNL D+NVRPLEVFMCSIVRKMG
Sbjct: 121 NVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLTDTNVRPLEVFMCSIVRKMG 180

Query: 181 YGDGFKWLSQYIK 193
           YGDGFKWLSQYIK
Sbjct: 181 YGDGFKWLSQYIK 193

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436425|ref|XP_004135993.1| PREDICTED: GTP-binding protein SAR1A-like [Cucumis sativus] gi|449505318|ref|XP_004162434.1| PREDICTED: GTP-binding protein SAR1A-like [Cucumis sativus]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/193 (96%), Positives = 193/193 (100%)

Query: 1   MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
           MFL+DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS
Sbjct: 1   MFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60

Query: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120
           IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDE+LA
Sbjct: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLA 120

Query: 121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
           NVPFLVLGNKIDIPYAASE+ELRYHLGL+NFTTGKGKVNLAD+NVRPLEVFMCSIVRKMG
Sbjct: 121 NVPFLVLGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLADTNVRPLEVFMCSIVRKMG 180

Query: 181 YGDGFKWLSQYIK 193
           YGDGFKW+SQYIK
Sbjct: 181 YGDGFKWVSQYIK 193

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556330|ref|XP_002519199.1| GTP-binding protein sar1, putative [Ricinus communis] gi|223541514|gb|EEF43063.1| GTP-binding protein sar1, putative [Ricinus communis]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/193 (97%), Positives = 191/193 (98%)

Query: 1   MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
           MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELS
Sbjct: 1   MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60

Query: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120
           IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA
Sbjct: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120

Query: 121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
           NVPFL+LGNKIDIPYAASE+ELRYHLGLS FTTGKGKVNL DSNVRPLEVFMCSIVRKMG
Sbjct: 121 NVPFLILGNKIDIPYAASEDELRYHLGLSTFTTGKGKVNLTDSNVRPLEVFMCSIVRKMG 180

Query: 181 YGDGFKWLSQYIK 193
           YGDGFKWLSQYIK
Sbjct: 181 YGDGFKWLSQYIK 193

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814115|ref|XP_002874941.1| Os01g0254000 [Arabidopsis lyrata subsp. lyrata] gi|297320778|gb|EFH51200.1| Os01g0254000 [Arabidopsis lyrata subsp. lyrata]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/193 (96%), Positives = 192/193 (99%)

Query: 1   MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
           MFL+DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELS
Sbjct: 1   MFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60

Query: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120
           IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDE+LA
Sbjct: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLA 120

Query: 121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
           NVPFL+LGNKIDIPYAASE+ELRYHLGLSNFTTGKGKVNL DSNVRPLEVFMCSIVRKMG
Sbjct: 121 NVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMG 180

Query: 181 YGDGFKWLSQYIK 193
           YG+GFKWLSQYIK
Sbjct: 181 YGEGFKWLSQYIK 193

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413948065|gb|AFW80714.1| GTP-binding protein SAR1A [Zea mays]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/193 (95%), Positives = 191/193 (98%)

Query: 1   MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
           MFL DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELS
Sbjct: 108 MFLWDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 167

Query: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120
           IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSD++LA
Sbjct: 168 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDDSLA 227

Query: 121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
           NVPFL+LGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNL DSNVRPLEVFMCS+VRKMG
Sbjct: 228 NVPFLILGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLGDSNVRPLEVFMCSVVRKMG 287

Query: 181 YGDGFKWLSQYIK 193
           YGDGFKW+SQYIK
Sbjct: 288 YGDGFKWVSQYIK 300

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722829|ref|NP_001238537.1| uncharacterized protein LOC100305650 [Glycine max] gi|255626197|gb|ACU13443.1| unknown [Glycine max]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/193 (95%), Positives = 192/193 (99%)

Query: 1   MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
           MFL DWFYG+LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS
Sbjct: 1   MFLWDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60

Query: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120
           IGKIKFKAFDLGGHQIARRVWKDYYA+VDAVVYLVDAYDKERFAESKKELDALLSDE+LA
Sbjct: 61  IGKIKFKAFDLGGHQIARRVWKDYYAQVDAVVYLVDAYDKERFAESKKELDALLSDESLA 120

Query: 121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
           NVPFLVLGNKIDIPYAASEEELRYHLGL+NFTTGKGKVNL+DSNVRP+EVFMCSIV+KMG
Sbjct: 121 NVPFLVLGNKIDIPYAASEEELRYHLGLTNFTTGKGKVNLSDSNVRPMEVFMCSIVKKMG 180

Query: 181 YGDGFKWLSQYIK 193
           YGDGFKW+SQYIK
Sbjct: 181 YGDGFKWVSQYIK 193

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469040|ref|XP_004152229.1| PREDICTED: GTP-binding protein SAR1A-like [Cucumis sativus] gi|449524132|ref|XP_004169077.1| PREDICTED: GTP-binding protein SAR1A-like [Cucumis sativus]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/193 (95%), Positives = 191/193 (98%)

Query: 1   MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
           MFL+DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS
Sbjct: 1   MFLIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60

Query: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120
           IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA+DKERFAESKKELDALLSDE+LA
Sbjct: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAFDKERFAESKKELDALLSDESLA 120

Query: 121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
            VPFL+LGNKIDIPYAASE+ELRYHLGL+NFTTGKGKVNL DSNVRPLEVFMCSIVRKMG
Sbjct: 121 TVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMG 180

Query: 181 YGDGFKWLSQYIK 193
           YGDGFKW+SQYIK
Sbjct: 181 YGDGFKWMSQYIK 193

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226496333|ref|NP_001146167.1| uncharacterized protein LOC100279736 [Zea mays] gi|242052887|ref|XP_002455589.1| hypothetical protein SORBIDRAFT_03g013550 [Sorghum bicolor] gi|357132067|ref|XP_003567654.1| PREDICTED: GTP-binding protein SAR1A-like isoform 1 [Brachypodium distachyon] gi|357132069|ref|XP_003567655.1| PREDICTED: GTP-binding protein SAR1A-like isoform 2 [Brachypodium distachyon] gi|219886033|gb|ACL53391.1| unknown [Zea mays] gi|238014488|gb|ACR38279.1| unknown [Zea mays] gi|241927564|gb|EES00709.1| hypothetical protein SORBIDRAFT_03g013550 [Sorghum bicolor] gi|414877369|tpg|DAA54500.1| TPA: SAR-like protein [Zea mays]

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/193 (95%), Positives = 191/193 (98%)

Query: 1   MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
           MFL DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELS
Sbjct: 1   MFLWDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60

Query: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120
           IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSD++LA
Sbjct: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDDSLA 120

Query: 121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
           NVPFL+LGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNL DSNVRPLEVFMCS+VRKMG
Sbjct: 121 NVPFLILGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLGDSNVRPLEVFMCSVVRKMG 180

Query: 181 YGDGFKWLSQYIK 193
           YGDGFKW+SQYIK
Sbjct: 181 YGDGFKWVSQYIK 193

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
TAIR|locus:2132148	193	SAR2 "secretion-associated RAS	1.0	1.0	0.792	1.6e-79
TAIR|locus:2096104	193	AT3G62560 [Arabidopsis thalian	0.994	0.994	0.781	7.9e-78
TAIR|locus:2011796	193	SAR1B "secretion-associated RA	0.994	0.994	0.776	3.4e-77
TAIR|locus:2195306	193	SARA1A "secretion-associated R	1.0	1.0	0.740	4.6e-73
UNIPROTKB|Q5EMZ6	189	SAR1 "Small COPII coat GTPase	0.979	1.0	0.546	2.4e-51
ASPGD|ASPL0000060507	189	AN0411 [Emericella nidulans (t	0.979	1.0	0.557	5.1e-51
CGD|CAL0005033	190	SAR1 [Candida albicans (taxid:	0.984	1.0	0.546	1.7e-50
DICTYBASE|DDB_G0272296	188	sarA "GTP-binding protein Sar1	0.974	1.0	0.546	1.7e-50
UNIPROTKB|Q59S78	190	SAR1 "Small COPII coat GTPase	0.984	1.0	0.546	1.7e-50
POMBASE|SPBC31F10.06c	190	sar1 "ADP-ribosylation factor	0.984	1.0	0.546	5.8e-50

TAIR|locus:2132148 SAR2 "secretion-associated RAS super family 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 153/193 (79%), Positives = 161/193 (83%)

Query:     1 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
             MF++DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELS
Sbjct:     1 MFMIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60

Query:    61 IGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXX 120
             IGKIKFKAFDLGGHQIARRVW                   ERFAESKK            
Sbjct:    61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLA 120

Query:   121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
             +VPFL+LGNKIDIPYAASE+ELRYHLGLSNFTTGKGKVNL DSNVRPLEVFMCSIVRKMG
Sbjct:   121 SVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMG 180

Query:   181 YGDGFKWLSQYIK 193
             YG+GFKW+SQYIK
Sbjct:   181 YGEGFKWVSQYIK 193

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TAIR|locus:2096104 AT3G62560 [Arabidopsis thaliana (taxid:3702)]

 Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
 Identities = 150/192 (78%), Positives = 160/192 (83%)

Query:     1 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
             MFL+DWFYGVLA+LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELS
Sbjct:     1 MFLVDWFYGVLATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60

Query:    61 IGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXX 120
             IGKIKFKAFDLGGHQIARRVW                   ERFAESKK            
Sbjct:    61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLA 120

Query:   121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
             NVPFL+LGNKIDIPYAASE+ELRYHLGL++FTTGKGKVNLA +NVRPLEVFMCSIVRKMG
Sbjct:   121 NVPFLILGNKIDIPYAASEDELRYHLGLTSFTTGKGKVNLAGTNVRPLEVFMCSIVRKMG 180

Query:   181 YGDGFKWLSQYI 192
             YG+GFKW+SQYI
Sbjct:   181 YGEGFKWVSQYI 192

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2011796 SAR1B "secretion-associated RAS 1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
 Identities = 149/192 (77%), Positives = 156/192 (81%)

Query:     1 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
             MFL DWFYG+LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELS
Sbjct:     1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60

Query:    61 IGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXX 120
             IGKIKFKAFDLGGHQIARRVW                   ERFAESK+            
Sbjct:    61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKRELDALLSDEALA 120

Query:   121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
              VPFL+LGNKIDIPYAASE+ELRYHLGL+NFTTGKGKV L DS VRPLEVFMCSIVRKMG
Sbjct:   121 TVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVTLGDSGVRPLEVFMCSIVRKMG 180

Query:   181 YGDGFKWLSQYI 192
             YG+GFKWLSQYI
Sbjct:   181 YGEGFKWLSQYI 192

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=TAS

GO:0019898 "extrinsic to membrane" evidence=IDA

TAIR|locus:2195306 SARA1A "secretion-associated RAS super family 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
 Identities = 143/193 (74%), Positives = 154/193 (79%)

Query:     1 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
             MFL DWFYG+LASLGL +KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELS
Sbjct:     1 MFLFDWFYGILASLGLCKKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60

Query:    61 IGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXX 120
             IGKI FKAFDLGGHQIARRVW                   +RF ESK+            
Sbjct:    61 IGKINFKAFDLGGHQIARRVWKDCYAKVDAVVYLVDAYDRDRFVESKRELDALLSDEALA 120

Query:   121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
             NVP L+LGNKIDIPYA+SE+ELRY+LGL+NFTTGKG VNL DS VRPLEVFMCSIVRKMG
Sbjct:   121 NVPCLILGNKIDIPYASSEDELRYYLGLTNFTTGKGIVNLEDSGVRPLEVFMCSIVRKMG 180

Query:   181 YGDGFKWLSQYIK 193
             YG+GFKWLSQYIK
Sbjct:   181 YGEGFKWLSQYIK 193

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005622 "intracellular" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|Q5EMZ6 SAR1 "Small COPII coat GTPase SAR1" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 105/192 (54%), Positives = 131/192 (68%)

Query:     1 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
             M++++WFY VL+SLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+
Sbjct:     1 MWIINWFYDVLSSLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELA 60

Query:    61 IGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXX 120
             IG ++F  FDLGGHQ ARR+W                   +RF E+K             
Sbjct:    61 IGNVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHDRFPEAKAELDALLSMEELA 120

Query:   121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
              VPF++LGNKID P A SEEELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + G
Sbjct:   121 KVPFVILGNKIDHPEAISEEELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQG 177

Query:   181 YGDGFKWLSQYI 192
             YG+G +WLSQY+
Sbjct:   178 YGEGIRWLSQYV 189

GO:0043581 "mycelium development" evidence=IEP

ASPGD|ASPL0000060507 AN0411 [Emericella nidulans (taxid:162425)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 107/192 (55%), Positives = 128/192 (66%)

Query:     1 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
             M++++WFY +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+    PT +PTSEEL 
Sbjct:     1 MWIINWFYDILASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILSPTAHPTSEELV 60

Query:    61 IGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXX 120
             IG  +F  FDLGGHQ ARR+W                   ERF ESK             
Sbjct:    61 IGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELS 120

Query:   121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
              VPFLVLGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + G
Sbjct:   121 KVPFLVLGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQG 177

Query:   181 YGDGFKWLSQYI 192
             YG+G +WLSQY+
Sbjct:   178 YGEGIRWLSQYV 189

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0003400 "regulation of COPII vesicle coating" evidence=IEA

GO:0006998 "nuclear envelope organization" evidence=IEA

CGD|CAL0005033 SAR1 [Candida albicans (taxid:5476)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 105/192 (54%), Positives = 126/192 (65%)

Query:     1 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
             M++ DWF  +L+SLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+
Sbjct:     1 MWIFDWFQDILSSLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELA 60

Query:    61 IGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXX 120
             IG ++F  FDLGGHQ ARR+W                   ERFAESK             
Sbjct:    61 IGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADTERFAESKAELESLFRIEELS 120

Query:   121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
              VPF++LGNKID+P A  E EL+  LGL N TTGK    L +   RP+EVFM S+V + G
Sbjct:   121 QVPFVILGNKIDVPTAVGEMELKNALGLYN-TTGKDTGKLPEGT-RPIEVFMVSVVMRSG 178

Query:   181 YGDGFKWLSQYI 192
             YG+ FKWLSQYI
Sbjct:   179 YGEAFKWLSQYI 190

GO:0005525 "GTP binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=IGI

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IGI

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0003400 "regulation of COPII vesicle coating" evidence=IEA

GO:0006998 "nuclear envelope organization" evidence=IEA

DICTYBASE|DDB_G0272296 sarA "GTP-binding protein Sar1A" [Dictyostelium discoideum (taxid:44689)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 105/192 (54%), Positives = 130/192 (67%)

Query:     1 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
             MFL DWF+ VL+ LGL+ K AKILFLGLDNAGKTTLL +LKD RL  + PT +PTSEEL+
Sbjct:     1 MFLFDWFWNVLSFLGLYNKNAKILFLGLDNAGKTTLLGVLKDGRLSSYLPTFHPTSEELA 60

Query:    61 IGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXX 120
             +G I+FKAFDLGGH+ ARR+W                   +RF ESKK            
Sbjct:    61 MGNIRFKAFDLGGHESARRLWKDYYPSVDAIVYLIDSSAQDRFVESKKELDSLLSSDELA 120

Query:   121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
             NVPFL+LGNK+DI    SEE+ R  LGL+  TTGKGK  L  + VRP+EVFMCS+V++ G
Sbjct:   121 NVPFLILGNKVDIGNT-SEEKFRASLGLTQ-TTGKGKTTL--NGVRPIEVFMCSVVKRYG 176

Query:   181 YGDGFKWLSQYI 192
             Y +GF+WL+ Y+
Sbjct:   177 YAEGFRWLANYL 188

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0030127 "COPII vesicle coat" evidence=ISS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0012507 "ER to Golgi transport vesicle membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q59S78 SAR1 "Small COPII coat GTPase SAR1" [Candida albicans SC5314 (taxid:237561)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 105/192 (54%), Positives = 126/192 (65%)

Query:     1 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
             M++ DWF  +L+SLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+
Sbjct:     1 MWIFDWFQDILSSLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELA 60

Query:    61 IGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXX 120
             IG ++F  FDLGGHQ ARR+W                   ERFAESK             
Sbjct:    61 IGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADTERFAESKAELESLFRIEELS 120

Query:   121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
              VPF++LGNKID+P A  E EL+  LGL N TTGK    L +   RP+EVFM S+V + G
Sbjct:   121 QVPFVILGNKIDVPTAVGEMELKNALGLYN-TTGKDTGKLPEGT-RPIEVFMVSVVMRSG 178

Query:   181 YGDGFKWLSQYI 192
             YG+ FKWLSQYI
Sbjct:   179 YGEAFKWLSQYI 190

GO:0003924 "GTPase activity" evidence=IGI

GO:0005525 "GTP binding" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=IGI

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IGI

POMBASE|SPBC31F10.06c sar1 "ADP-ribosylation factor Sar1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 105/192 (54%), Positives = 128/192 (66%)

Query:     1 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
             MF+++WFY  LA LGL  K AK+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+
Sbjct:     1 MFIINWFYDALAMLGLVNKHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELA 60

Query:    61 IGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXX 120
             IG ++F  FDLGGHQ ARR+W                   ER +ESK             
Sbjct:    61 IGNVRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELA 120

Query:   121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
              VPFL+LGNKID P A SE+EL+  LGL   TTGKG V+     +RP+EVFMCS+V + G
Sbjct:   121 RVPFLILGNKIDAPGAISEDELKAALGLYQ-TTGKG-VSKPVPGIRPIEVFMCSVVLRQG 178

Query:   181 YGDGFKWLSQYI 192
             YG+GFKWL+QY+
Sbjct:   179 YGEGFKWLAQYV 190

GO:0000139 "Golgi membrane" evidence=IEA

GO:0003924 "GTPase activity" evidence=ISM

GO:0005525 "GTP binding" evidence=ISM

GO:0005737 "cytoplasm" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IMP

GO:0006998 "nuclear envelope organization" evidence=IMP

GO:0007264 "small GTPase mediated signal transduction" evidence=ISM

GO:0030127 "COPII vesicle coat" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O04267	SAR1B_BRACM	No assigned EC number	0.9175	0.9948	0.9846	N/A	no
O04266	SAR1A_BRACM	No assigned EC number	0.9430	1.0	1.0	N/A	no
P0C583	SAR1_NEUCR	3, ., 6, ., 5, ., -	0.6302	0.9792	1.0	N/A	no
Q6BVA7	SAR1_DEBHA	3, ., 6, ., 5, ., -	0.6614	0.9844	1.0	yes	no
Q5BGB9	SAR1_EMENI	3, ., 6, ., 5, ., -	0.6510	0.9792	1.0	yes	no
Q2HA55	SAR1_CHAGB	3, ., 6, ., 5, ., -	0.6544	0.9740	0.9894	N/A	no
Q9QVY3	SAR1B_CRIGR	No assigned EC number	0.6051	0.9896	0.9646	yes	no
Q6CWR7	SAR1_KLULA	3, ., 6, ., 5, ., -	0.6263	0.9585	0.9736	yes	no
P78976	SAR1_HYPJE	3, ., 6, ., 5, ., -	0.6354	0.9792	1.0	N/A	no
Q01475	SAR1_SCHPO	3, ., 6, ., 5, ., -	0.6406	0.9844	1.0	yes	no
Q01474	SAR1B_ARATH	No assigned EC number	0.9375	0.9948	0.9948	no	no
Q3T0T7	SAR1B_BOVIN	No assigned EC number	0.6051	0.9896	0.9646	yes	no
Q5HZY2	SAR1B_RAT	No assigned EC number	0.6051	0.9896	0.9646	yes	no
Q9Y6B6	SAR1B_HUMAN	No assigned EC number	0.6	0.9896	0.9646	yes	no
Q877B9	SAR1_ASPOR	3, ., 6, ., 5, ., -	0.6614	0.9792	1.0	yes	no
Q755D7	SAR1_ASHGO	3, ., 6, ., 5, ., -	0.6105	0.9585	0.9736	yes	no
Q0UKC0	SAR1_PHANO	3, ., 6, ., 5, ., -	0.6378	0.9430	0.9837	N/A	no
A1D4D1	SAR1_NEOFI	3, ., 6, ., 5, ., -	0.6614	0.9792	1.0	N/A	no
Q559R0	SAR1A_DICDI	No assigned EC number	0.6197	0.9740	1.0	yes	no
Q0CUN7	SAR1_ASPTN	3, ., 6, ., 5, ., -	0.6562	0.9792	1.0	N/A	no
Q5PYH3	SAR1B_PIG	No assigned EC number	0.6051	0.9896	0.9646	yes	no
Q9CQC9	SAR1B_MOUSE	No assigned EC number	0.6051	0.9896	0.9646	yes	no
Q8MQT8	SAR1_GIAIN	No assigned EC number	0.5159	0.9689	0.9790	N/A	no
P52885	SAR1_TOBAC	No assigned EC number	0.7727	1.0	0.9747	N/A	no
P52884	SAR2_SOLLC	No assigned EC number	0.8808	1.0	1.0	N/A	no
P0CR30	SAR1_CRYNJ	3, ., 6, ., 5, ., -	0.6666	0.9792	1.0	yes	no
P0CR31	SAR1_CRYNB	3, ., 6, ., 5, ., -	0.6666	0.9792	1.0	N/A	no
Q4WJS7	SAR1_ASPFU	3, ., 6, ., 5, ., -	0.6562	0.9792	1.0	yes	no
P0C951	SAR1_ASPNC	3, ., 6, ., 5, ., -	0.6614	0.9792	1.0	yes	no
P0C950	SAR1_ASPNG	3, ., 6, ., 5, ., -	0.6458	0.9792	1.0	yes	no
A5E5G3	SAR1_LODEL	3, ., 6, ., 5, ., -	0.6354	0.9844	1.0	N/A	no
Q6CB54	SAR1_YARLI	3, ., 6, ., 5, ., -	0.6614	0.9844	1.0	yes	no
P20606	SAR1_YEAST	3, ., 6, ., 5, ., -	0.6157	0.9585	0.9736	yes	no
Q4P0I7	SAR1_USTMA	3, ., 6, ., 5, ., -	0.6614	0.9792	1.0	N/A	no
Q6FUZ9	SAR1_CANGA	3, ., 6, ., 5, ., -	0.6096	0.9430	0.9629	yes	no
O04834	SAR1A_ARATH	No assigned EC number	0.9481	1.0	1.0	yes	no
Q9P4C8	SAR1_PICPG	3, ., 6, ., 5, ., -	0.6666	0.9844	1.0	yes	no
Q5EMZ6	SAR1_MAGO7	3, ., 6, ., 5, ., -	0.6510	0.9792	1.0	N/A	no
A3LTA2	SAR1_PICST	3, ., 6, ., 5, ., -	0.6406	0.9844	1.0	yes	no
Q23445	SAR1_CAEEL	No assigned EC number	0.5863	0.9896	0.9896	yes	no
A5DR82	SAR1_PICGU	3, ., 6, ., 5, ., -	0.6302	0.9844	1.0	N/A	no
Q59S78	SAR1_CANAL	3, ., 6, ., 5, ., -	0.625	0.9844	1.0	N/A	no
A1CRG9	SAR1_ASPCL	3, ., 6, ., 5, ., -	0.6562	0.9792	1.0	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	193
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	1e-129
smart00178	184	smart00178, SAR, Sar1p-like members of the Ras-fam	1e-121
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	1e-90
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	1e-51
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	6e-40
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	3e-37
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	6e-36
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	7e-33
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	8e-33
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	3e-32
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	4e-30
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	4e-29
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	2e-28
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	5e-27
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	3e-26
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	3e-26
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	9e-26
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	1e-25
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	3e-24
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	6e-23
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	7e-22
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	1e-21
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	8e-14
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-12
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	2e-09
pfam00503	329	pfam00503, G-alpha, G-protein alpha subunit	5e-09
cd04105	202	cd04105, SR_beta, Signal recognition particle rece	2e-08
pfam08477	116	pfam08477, Miro, Miro-like protein	4e-07
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	7e-06
cd00880	161	cd00880, Era_like, E	1e-05
pfam09439	181	pfam09439, SRPRB, Signal recognition particle rece	3e-04
TIGR00450	442	TIGR00450, mnmE_trmE_thdF, tRNA modification GTPas	5e-04
smart00275	342	smart00275, G_alpha, G protein alpha subunit	8e-04
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	0.001
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	0.001
cd00066	315	cd00066, G-alpha, Alpha subunit of G proteins (gua	0.002
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	0.002
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	0.003
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	0.004

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score =  361 bits (929), Expect = e-129
 Identities = 136/191 (71%), Positives = 163/191 (85%)

Query: 2   FLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSI 61
           F+ DWFY VL+SLGL++KEAKI+FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I
Sbjct: 1   FIFDWFYNVLSSLGLYKKEAKIVFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTI 60

Query: 62  GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALAN 121
           G +KF  FDLGGH+ ARRVWKDY+ +VD +V+LVDA D ERF ESK+ELD+LL+DE LAN
Sbjct: 61  GNVKFTTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELAN 120

Query: 122 VPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGY 181
           VP L+LGNKID P A SEEELR  LGL   TTGKG V+L  SN+RP+EVFMCS+V++ GY
Sbjct: 121 VPILILGNKIDKPGAVSEEELREALGLYGTTTGKGGVSLKVSNIRPVEVFMCSVVKRQGY 180

Query: 182 GDGFKWLSQYI 192
           G+GF+WLSQY+
Sbjct: 181 GEGFRWLSQYL 191

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases

 Score =  339 bits (871), Expect = e-121
 Identities = 149/189 (78%), Positives = 167/189 (88%), Gaps = 5/189 (2%)

Query: 4   LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGK 63
            DWFY +LASLGLW K AKILFLGLDNAGKTTLLHMLK++RL QHQPTQ+PTSEEL+IG 
Sbjct: 1   FDWFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGN 60

Query: 64  IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP 123
           IKF  FDLGGHQ ARR+WKDY+ +V+ +VYLVDAYDKERFAESK+ELDALLSDE LA VP
Sbjct: 61  IKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVP 120

Query: 124 FLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGD 183
           FL+LGNKID PYAASE+ELRY LGL+N TTGKGKV      VRP+EVFMCS+VR+MGYG+
Sbjct: 121 FLILGNKIDAPYAASEDELRYALGLTNTTTGKGKV-----GVRPVEVFMCSVVRRMGYGE 175

Query: 184 GFKWLSQYI 192
           GFKWLSQYI
Sbjct: 176 GFKWLSQYI 184

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score =  262 bits (671), Expect = 1e-90
 Identities = 79/186 (42%), Positives = 110/186 (59%), Gaps = 12/186 (6%)

Query: 7   FYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKF 66
           F  +LA L  W KE +IL LGLDNAGKTT+L+ LK   +V   PT     E ++   +KF
Sbjct: 1   FLSILAKLFGWNKEMRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVTYKNVKF 60

Query: 67  KAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLV 126
             +D+GG +  R +W++Y+   DAV+++VD+ D++R  E+K+EL ALL++E LA+ P L+
Sbjct: 61  TVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLI 120

Query: 127 LGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFK 186
           L NK D+P A SE E+R  LGL                 RP E+  CS V   G  +G  
Sbjct: 121 LANKQDLPGAMSEAEIRELLGLHELKD------------RPWEIQGCSAVTGEGLDEGLD 168

Query: 187 WLSQYI 192
           WLS YI
Sbjct: 169 WLSNYI 174

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score =  163 bits (414), Expect = 1e-51
 Identities = 63/169 (37%), Positives = 89/169 (52%), Gaps = 12/169 (7%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW 81
           +IL LGLD AGKTT+L+ LK   +V   PT     E +    +KF  +D+GG    R +W
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVKFTVWDVGGQDKIRPLW 60

Query: 82  KDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE 141
           K YY   D ++++VD+ D+ER  E+K EL  LL++E L   P L+L NK D+P A +E E
Sbjct: 61  KHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGALTESE 120

Query: 142 LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQ 190
           L   LGL          ++         +  CS V   G  +G  WL +
Sbjct: 121 LIELLGLE---------SIKGRRWH---IQPCSAVTGDGLDEGLDWLIE 157

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score =  133 bits (337), Expect = 6e-40
 Identities = 60/170 (35%), Positives = 88/170 (51%), Gaps = 12/170 (7%)

Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR 78
           +E +IL LGLDNAGKTT+L  L  E +    PTQ    + +     K   +D+GG +  R
Sbjct: 14  QEVRILLLGLDNAGKTTILKQLASEDISHITPTQGFNIKNVQADGFKLNVWDIGGQRKIR 73

Query: 79  RVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS 138
             W++Y+   D ++Y++D+ D++RF E+ +EL  LL +E LA VP LV  NK D+  AA 
Sbjct: 74  PYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDLLTAAP 133

Query: 139 EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWL 188
            EE+               +NL D   R   +  CS     G  +G  W+
Sbjct: 134 AEEV------------AEALNLHDIRDRSWHIQACSAKTGEGLQEGMNWV 171

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score =  126 bits (318), Expect = 3e-37
 Identities = 63/168 (37%), Positives = 90/168 (53%), Gaps = 12/168 (7%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW 81
           +IL LGLD AGKTT+L+ L+   +V   PT     E ++   +KF+ +DLGG    R  W
Sbjct: 1   RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYW 60

Query: 82  KDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE 141
           + YY+  DA++Y+VD+ D++R   SK EL A+L +E L +   LV  NK D+P A SE E
Sbjct: 61  RCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVFANKQDMPGALSEAE 120

Query: 142 LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLS 189
           +   LGLS                R  ++F  S  +  G  +G  WL 
Sbjct: 121 VAEKLGLSELKD------------RTWQIFKTSATKGEGLDEGMDWLV 156

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score =  123 bits (310), Expect = 6e-36
 Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 17/181 (9%)

Query: 15  GLW-----QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAF 69
            LW     +KE K++ +GLDNAGKTT+L+      +V   PT     EE+    I+F  +
Sbjct: 5   SLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMW 64

Query: 70  DLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGN 129
           D+GG +  R  W  YY   DAV+ ++D+ D+ER   +K+EL  +L+ E L     LVL N
Sbjct: 65  DIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLAN 124

Query: 130 KIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLS 189
           K D+  A +  E+   LGL++                   +  C  +   G  +G  W++
Sbjct: 125 KQDLKGAMTPAEISESLGLTSIRD------------HTWHIQGCCALTGEGLPEGLDWIA 172

Query: 190 Q 190
            
Sbjct: 173 S 173

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score =  115 bits (289), Expect = 7e-33
 Identities = 61/175 (34%), Positives = 92/175 (52%), Gaps = 18/175 (10%)

Query: 23  ILFLGLDNAGKTTLLHMLKDERLVQHQ---PTQYPTSEELSIGKI-----KFKAFDLGGH 74
           +L LGLDNAGKTT L   K +    ++   P++   +  L+IG I     +   +DLGG 
Sbjct: 2   VLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLNIGTIEVGKARLMFWDLGGQ 61

Query: 75  QIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP 134
           +  R +W  YYA+   V+Y++D+ D+ERF ESK   + ++++EAL  VP LVL NK D+P
Sbjct: 62  EELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANKQDLP 121

Query: 135 YAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLS 189
            A S  E++       F      +   D  V+P      S +   G  +G +WL 
Sbjct: 122 DALSVAEIK-----EVFDDCIALIGRRDCLVQP-----VSALEGEGVEEGIEWLV 166

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score =  114 bits (288), Expect = 8e-33
 Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 12/171 (7%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSI-GKIKFKAFDLGGHQIARRV 80
           ++L LGLD+AGK+TLL+ LK   LV   PT     E L +   +    +D+GG +  R V
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTV 60

Query: 81  WKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEE 140
           WK Y    D +VY+VD+ D+ R  ES+KEL  +L +E +  VP ++L NK D+P A + E
Sbjct: 61  WKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAE 120

Query: 141 ELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191
           E+     L  + + +      D  V+P     CS V   G  + F+ L+ +
Sbjct: 121 EITRRFKLKKYCSDR------DWYVQP-----CSAVTGEGLAEAFRKLASF 160

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score =  113 bits (286), Expect = 3e-32
 Identities = 60/184 (32%), Positives = 88/184 (47%), Gaps = 12/184 (6%)

Query: 7   FYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKF 66
              +L      ++E +IL LGLDNAGKTT+L     E +    PT     + L     K 
Sbjct: 1   LLTILRKTKQKEREMRILMLGLDNAGKTTILKKFNGEDISTISPTLGFNIKTLEYNGYKL 60

Query: 67  KAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLV 126
             +D+GG +  R  W++Y+   DA++++VD+ D+ R  + K+EL  LL +E LA    L+
Sbjct: 61  NIWDVGGQKSLRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLI 120

Query: 127 LGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFK 186
             NK D+P A S EE+R  L L +  +                +F CS V      DG  
Sbjct: 121 FANKQDLPGALSPEEIREVLELDSIKS------------HHWRIFGCSAVTGENLLDGID 168

Query: 187 WLSQ 190
           WL  
Sbjct: 169 WLVD 172

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score =  107 bits (270), Expect = 4e-30
 Identities = 53/172 (30%), Positives = 83/172 (48%), Gaps = 16/172 (9%)

Query: 23  ILFLGLDNAGKTTLLHMLKDERLVQHQ--PTQYPTSEELSIGKIKFKAFDLGGHQIARRV 80
           IL LGLDN+GKTT+++ LK          PT     E    G + F AFD+ G    R +
Sbjct: 2   ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGNLSFTAFDMSGQGKYRGL 61

Query: 81  WKDYYAKVDAVVYLVDAYDKERFAESKKELDALLS--DEALANVPFLVLGNKIDIPYAAS 138
           W+ YY  +  +++++D+ D+ R   +K EL+ LL+  D     +P L   NK+D+P A +
Sbjct: 62  WEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKMDLPDALT 121

Query: 139 EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQ 190
             ++   L L          N+ D   +P  +F  S +   G  +G  WL  
Sbjct: 122 AVKITQLLCLE---------NIKD---KPWHIFASSALTGEGLDEGVDWLQA 161

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score =  106 bits (265), Expect = 4e-29
 Identities = 60/178 (33%), Positives = 94/178 (52%), Gaps = 16/178 (8%)

Query: 18  QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
           +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    +KF  +D+GG    
Sbjct: 15  KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKL 74

Query: 78  RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA 137
           R +W+ YY   + ++++VD+ D+ER  ++++EL+ +LS++ L +   LV  NK D+P A 
Sbjct: 75  RPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM 134

Query: 138 SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM--CSIVRKMGYGDGFKWLSQYIK 193
           S  E+   LGL               +VR    ++  C      G  +G  WLS  IK
Sbjct: 135 STTEVTEKLGL--------------HSVRQRNWYIQGCCATTAQGLYEGLDWLSANIK 178

Length = 182

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score =  104 bits (260), Expect = 2e-28
 Identities = 56/172 (32%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR 78
           KE +IL LGLD AGKTT+L+ LK  + V   PT     E ++   +KF  +D+GG    R
Sbjct: 8   KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 67

Query: 79  RVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS 138
            +W+ YY     ++++VD+ D++R  E+++EL  +++D  + +   LV  NK D+P A  
Sbjct: 68  PLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMK 127

Query: 139 EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQ 190
             E++  LGL+          + D   R   V         G  +G  WLS 
Sbjct: 128 PHEIQEKLGLT---------RIRD---RNWYVQPSCATSGDGLYEGLTWLSS 167

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score =  100 bits (250), Expect = 5e-27
 Identities = 49/128 (38%), Positives = 75/128 (58%), Gaps = 1/128 (0%)

Query: 26  LGLDNAGKTTLLHMLK-DERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 84
           +GL N+GKTTL++++   +      PT      +++ G +  K +DLGG    R +W+ Y
Sbjct: 5   VGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTKGNVTIKVWDLGGQPRFRSMWERY 64

Query: 85  YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRY 144
              V+A+VY+VDA D+E+   +K EL  LL   +L  +P LVLGNK D+P A S +EL  
Sbjct: 65  CRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIE 124

Query: 145 HLGLSNFT 152
            + L + T
Sbjct: 125 QMNLKSIT 132

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 97.9 bits (244), Expect = 3e-26
 Identities = 47/129 (36%), Positives = 75/129 (58%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW 81
           +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61

Query: 82  KDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE 141
           + Y+     ++++VD+ D+ER  E+++EL  +L+++ L +   LV  NK D+P A S  E
Sbjct: 62  RHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAE 121

Query: 142 LRYHLGLSN 150
           +   LGL +
Sbjct: 122 VTDKLGLHS 130

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 98.5 bits (245), Expect = 3e-26
 Identities = 48/131 (36%), Positives = 75/131 (57%)

Query: 18  QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
            KE +IL +GLD AGKTT+L+ LK    V   PT     E ++   I F  +D+GG    
Sbjct: 11  NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKI 70

Query: 78  RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA 137
           R +W+ YY     ++++VD+ D++R  E+++EL  +L+++ L +   LV  NK D+P A 
Sbjct: 71  RPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM 130

Query: 138 SEEELRYHLGL 148
              E+   LGL
Sbjct: 131 KAAEITEKLGL 141

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 98.5 bits (245), Expect = 9e-26
 Identities = 50/185 (27%), Positives = 77/185 (41%), Gaps = 9/185 (4%)

Query: 16  LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQP----TQYPTSEELSIG-KIKFKAFD 70
           L+ KE KI+ LG    GKTTLL+ L  +   +  P       P          IK + +D
Sbjct: 1   LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60

Query: 71  LGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNK 130
             G +  R +  +YY   + ++ + D+  +E   E  +E    L + A  +VP L++GNK
Sbjct: 61  TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120

Query: 131 IDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADS-NVRPLEVFMCSIVRKMGYGDGFKW 187
           ID+      SEE L              K  L +  N   LE    S+       + FK 
Sbjct: 121 IDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGP-NVNELFKE 179

Query: 188 LSQYI 192
           L + +
Sbjct: 180 LLRKL 184

Length = 219

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 97.3 bits (242), Expect = 1e-25
 Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 16/177 (9%)

Query: 18  QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
           +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    
Sbjct: 15  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74

Query: 78  RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA 137
           R +W+ Y+     ++++VD+ D++R  E++ EL  +L+++ L +   LV  NK D+P A 
Sbjct: 75  RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134

Query: 138 SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYG--DGFKWLSQYI 192
           +  E+   LGL               ++R    ++ S     G G  +G  WLS  I
Sbjct: 135 NAAEITDKLGL--------------HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177

Length = 181

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 93.2 bits (231), Expect = 3e-24
 Identities = 56/171 (32%), Positives = 86/171 (50%), Gaps = 11/171 (6%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW 81
           +++ LGLD AGKTT+L  LK +  +Q  PT     E +    +KF  +D+GG    R +W
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLW 60

Query: 82  KDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE 141
           K YY    AVV+++D+  ++R +E+  EL  LL+++ L +   L+  NK D+  A S EE
Sbjct: 61  KHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEE 120

Query: 142 LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192
           +   L L     G           R   +  C     MG  +G  WLS+ +
Sbjct: 121 MTELLSLHKLCCG-----------RSWYIQGCDARSGMGLYEGLDWLSRQL 160

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 89.8 bits (223), Expect = 6e-23
 Identities = 49/135 (36%), Positives = 71/135 (52%), Gaps = 3/135 (2%)

Query: 23  ILFLGLDNAGKTTLLHMLKDER-LVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW 81
           IL LGLD AGKT+LLH L  ER L    PT    S  +       +  ++GG Q  R+ W
Sbjct: 2   ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYW 61

Query: 82  KDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE 141
           K Y +    ++++VD+ D ER   +++EL  LL      ++P +VL NK D+P A S +E
Sbjct: 62  KRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQE 119

Query: 142 LRYHLGLSNFTTGKG 156
           +   L L     G+ 
Sbjct: 120 IHKELELEPIARGRR 134

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score = 87.1 bits (216), Expect = 7e-22
 Identities = 56/172 (32%), Positives = 84/172 (48%), Gaps = 15/172 (8%)

Query: 23  ILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWK 82
           +L +GLDNAGKTTL+  L+ E   +  PT   T  +L + K +   FDLGG    R +W 
Sbjct: 2   LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWV 61

Query: 83  DYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEEL 142
           +YYA+   +V++VD+ D +R  E K+ L  LL    ++  P LVL NK D   A    ++
Sbjct: 62  NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADV 121

Query: 143 RYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYG------DGFKWL 188
             +L L           L + N     +  CS +  +G        +G +WL
Sbjct: 122 IEYLSLE---------KLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWL 164

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 86.8 bits (215), Expect = 1e-21
 Identities = 51/134 (38%), Positives = 73/134 (54%), Gaps = 5/134 (3%)

Query: 23  ILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSE--ELSIGK---IKFKAFDLGGHQIA 77
           I+ LGLD+AGKTT+L+ LK    V   PT+   +E  ++S+G    + F  +D+GG +  
Sbjct: 6   IVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQEKL 65

Query: 78  RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA 137
           R +WK Y    D +V++VD+ D ER  E+K EL  +        VP LVL NK D+P A 
Sbjct: 66  RPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDLPNAL 125

Query: 138 SEEELRYHLGLSNF 151
              E+   L L   
Sbjct: 126 PVSEVEKLLALHEL 139

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 65.5 bits (160), Expect = 8e-14
 Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 7/139 (5%)

Query: 20  EAKILFLGLDNAGKTTLLHMLK--DERLVQHQPTQY----PTSEELSIGKIKFKAFDLGG 73
           E KI+ +G  N GK+TLL+ L      + +++P        T  E      KF   D  G
Sbjct: 1   EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60

Query: 74  HQIARRVWKDYYAKVDAVVYLVD-AYDKERFAESKKELDALLSDEALANVPFLVLGNKID 132
            +    + + YY  V++ + + D         E  ++    +   A + VP +++GNKID
Sbjct: 61  QEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKID 120

Query: 133 IPYAASEEELRYHLGLSNF 151
           +  A  +  + +     N 
Sbjct: 121 LRDAKLKTHVAFLFAKLNG 139

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 62.5 bits (152), Expect = 1e-12
 Identities = 37/178 (20%), Positives = 67/178 (37%), Gaps = 28/178 (15%)

Query: 24  LFLGLDNAGKTTLLHMLKDERLVQ----HQPTQYPTSEELSI--GKIKFKAFDLGGHQIA 77
           + +G    GK++LL+ L    + +       T+ P      +  GK+K    D  G    
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEF 60

Query: 78  RRVW-----KDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKID 132
             +      +      D ++ +VD+ D+E   ++K  +   L  E    +P +++GNKID
Sbjct: 61  GGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKE---GIPIILVGNKID 117

Query: 133 IPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQ 190
           +      EEL     L+                  + VF  S     G  + F+ L +
Sbjct: 118 LLEEREVEELLRLEELAKIL--------------GVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 18/146 (12%)

Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ--------YPTSEELSIGKIKFKA-- 68
            E KI+ +G   AGKTT +  L D+ LV  +            PT+  +  G I+     
Sbjct: 9   IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDT 68

Query: 69  ----FDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPF 124
               F   G +  + +W+         + LVD+     F   +     +    +   +P 
Sbjct: 69  GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEE----IIDFLTSRNPIPV 124

Query: 125 LVLGNKIDIPYAASEEELRYHLGLSN 150
           +V  NK D+  A   E++R  L L  
Sbjct: 125 VVAINKQDLFDALPPEKIREALKLEL 150

Length = 187

>gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 58  ELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV--DAYDK---E-----RFAESK 107
           +     +KF+ FD+GG +  R+ W   +  V A++++V    YD+   E     R  ES 
Sbjct: 162 KFDFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDDSTNRLEESL 221

Query: 108 KELDALLSDEALANVPFLVLGNKIDI 133
              + + +     N P ++  NK D+
Sbjct: 222 NLFEEICNSPWFKNTPIILFLNKKDL 247

G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329

>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP)

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 7/128 (5%)

Query: 23  ILFLGLDNAGKTTLLHMLKDERLVQHQPTQYP---TSEELSIGKIKFKAFDLGGHQIAR- 78
           +L LG  ++GKT L   L   ++     +  P   +    S    K    D+ GH+  R 
Sbjct: 3   VLLLGPSDSGKTALFTKLTTGKVRSTVTSIEPNVASFYSNSSKGKKLTLVDVPGHEKLRD 62

Query: 79  RVWKDYYAKVDAVVYLVDAYDKERFAESKKEL--DALLSDEALAN-VPFLVLGNKIDIPY 135
           ++ +   A + A+V++VD+   ++      E   D L   E + N +P L+  NK D+  
Sbjct: 63  KLLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEKIKNKIPILIACNKQDLFT 122

Query: 136 AASEEELR 143
           A   ++++
Sbjct: 123 AKPAKKIK 130

Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 6/116 (5%)

Query: 22  KILFLGLDNAGKTTLLHML-----KDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQI 76
           K++ +G   +GK++LL  L       E L     T    + E+         +D GG + 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 77  ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA-NVPFLVLGNKI 131
            +     +    DA++ + D  D+E   E  + +  L +   L   +P +++GNK+
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 12/90 (13%)

Query: 63  KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERF-------AESKKELDALLS 115
           +++   FDL GH     V  ++Y     V+ + D  D++ F        E K+E      
Sbjct: 48  EVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQE---GGP 104

Query: 116 DEALANVPFLVLGNKIDIPY--AASEEELR 143
              + N+  +V  NKID+    A SE+E R
Sbjct: 105 HGNMENIVVVVCANKIDLTKHRAVSEDEGR 134

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 19/132 (14%)

Query: 25  FLGLDNAGKTTLLHML--KDERLVQHQP--TQYPTSEEL-SIGKIKFKAFDLGG-----H 74
             G  N GK++LL+ L  ++  +V   P  T+ P  +E   +        D  G      
Sbjct: 2   IFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRKEWELLPLGPVVLIDTPGLDEEGG 61

Query: 75  QIARRVWKDY--YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKID 132
               RV +      + D V+ +VD+        +  E +A L        P L++ NKID
Sbjct: 62  LGRERVEEARQVADRADLVLLVVDS------DLTPVEEEAKLGLLRERGKPVLLVLNKID 115

Query: 133 IPYAASEEELRY 144
           +    SEEE   
Sbjct: 116 L-VPESEEEELL 126

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta subunit

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 8/132 (6%)

Query: 23  ILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEE--LSIGKIKFKAFDLGGHQIARRV 80
           ++  GL ++GKT+L  +L    + +   +Q P++    +      F   D  GH   R+ 
Sbjct: 6   VIIAGLCDSGKTSLFTLLTTGTVKKTVTSQEPSAAYKYMLHKGFSFTLIDFPGHVKLRQK 65

Query: 81  WKDYY---AKVDAVVYLVD-AYDKERFAESKKELDALLSDEALAN--VPFLVLGNKIDIP 134
             +     + +  +V++VD     +   ++ + L  +LS   L    +  L+  NK +  
Sbjct: 66  LLETIKDSSSLRGIVFVVDSTAFPKEVTDTAEFLYEILSITELLKNGIDILIACNKQESF 125

Query: 135 YAASEEELRYHL 146
            A   ++++  L
Sbjct: 126 TARPPKKIKQAL 137

The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181

>gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 18/135 (13%)

Query: 22  KILFLGLDNAGKTTLLH-MLKDER-LVQHQP--TQYPTSEELSIGKIKFKAFDLGG---- 73
           K+  +G  N GK++LL+ +LK +R +V      T+     +  +  I  K  D  G    
Sbjct: 205 KLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREH 264

Query: 74  -HQIARR-VWKDYYA--KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGN 129
              + R  + K + A  + D V+Y++DA      ++   + D L+ D   +  PF+++ N
Sbjct: 265 ADFVERLGIEKSFKAIKQADLVIYVLDA------SQPLTKDDFLIIDLNKSKKPFILVLN 318

Query: 130 KIDIPYAASEEELRY 144
           KID+   + E  +  
Sbjct: 319 KIDLKINSLEFFVSS 333

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer [Protein synthesis, tRNA and rRNA base modification]. Length = 442

>gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 10/89 (11%)

Query: 55  TSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD--AYDK--------ERFA 104
                 + K+ F+ FD+GG +  R+ W   +  V A+++ V    YD+         R  
Sbjct: 175 QETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQ 234

Query: 105 ESKKELDALLSDEALANVPFLVLGNKIDI 133
           ES    +++ +    AN   ++  NKID+
Sbjct: 235 ESLNLFESICNSRWFANTSIILFLNKIDL 263

Subunit of G proteins that contains the guanine nucleotide binding site. Length = 342

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 18/122 (14%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERL--VQHQP--TQYPTSEELSIGKIKFKAFDLGG--HQ 75
           ++  +G  N GK+TL++ L   ++  V   P  T+ P    L     +    D  G    
Sbjct: 1   RVALVGRPNVGKSTLINALTGAKVAIVSDYPGTTRDPILGVL-GLGRQIILVDTPGLIEG 59

Query: 76  IARRVWKDYYAK-------VDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLG 128
            +     + + +        D ++ +VDA   E   E  +E+   L  E L   P +++ 
Sbjct: 60  ASEGKGVEGFNRFLEAIREADLILLVVDA--SEGLTEDDEEILEEL--EKLPKKPIILVL 115

Query: 129 NK 130
           NK
Sbjct: 116 NK 117

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 25/116 (21%), Positives = 54/116 (46%), Gaps = 4/116 (3%)

Query: 22  KILFLGLDNAGKTTL-LHMLKDERLVQHQPTQYPTSEELSI---GKIKFKAFDLGGHQIA 77
           K++ +G    GK+ L L  + DE +  ++PT+  +  +  +    +++    D  G +  
Sbjct: 2   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQLNILDTAGQEDY 61

Query: 78  RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDI 133
             +  +Y+   +  + +    D E F    +  + +L  +   NVP L++GNK D+
Sbjct: 62  AAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDL 117

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206639 cd00066, G-alpha, Alpha subunit of G proteins (guanine nucleotide binding)

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 12/85 (14%)

Query: 60  SIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV--DAYDK---E-----RFAESKKE 109
           SI  +KF+ FD+GG +  R+ W   +  V A++++V    YD+   E     R  ES K 
Sbjct: 157 SIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLVEDESVNRMQESLKL 216

Query: 110 LDALLSDEALANVPF-LVLGNKIDI 133
            D++ +    AN    L L NK D+
Sbjct: 217 FDSICNSRWFANTSIILFL-NKKDL 240

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. Length = 315

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 36.7 bits (86), Expect = 0.002
 Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 30/147 (20%)

Query: 22  KILFLGLDNAGKTTLL-HMLKDER-LVQHQP-TQYPT----SEELSIGKIKFKAFDLGG- 73
           K++  G  N GK++LL  +   +R +V     T   T     EE+ +G I  +  D  G 
Sbjct: 5   KVVIAGKPNVGKSSLLNALAGRDRAIVSDIAGT---TRDVIEEEIDLGGIPVRLIDTAGL 61

Query: 74  -------HQIA-RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFL 125
                   +I   R  +    + D V+ +VDA      +E   E D  +  E  A  P +
Sbjct: 62  RETEDEIEKIGIERARE-AIEEADLVLLVVDA------SEGLDEEDLEI-LELPAKKPVI 113

Query: 126 VLGNKIDI---PYAASEEELRYHLGLS 149
           V+ NK D+       SE   +  + +S
Sbjct: 114 VVLNKSDLLSDAEGISELNGKPIIAIS 140

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 36.8 bits (85), Expect = 0.003
 Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 30/138 (21%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIG-------------KIKFKA 68
           K + +G    GK+ LL    D+R    QP       +L+IG              IK + 
Sbjct: 8   KYIIIGDTGVGKSCLLLQFTDKRF---QPVH-----DLTIGVEFGARMITIDNKPIKLQI 59

Query: 69  FDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSD---EALANVPFL 125
           +D  G +  R + + YY      + + D   +E F      L + L D    A AN+  +
Sbjct: 60  WDTAGQESFRSITRSYYRGAAGALLVYDITRRETF----NHLASWLEDARQHANANMTIM 115

Query: 126 VLGNKIDIPY--AASEEE 141
           ++GNK D+ +  A S EE
Sbjct: 116 LIGNKCDLAHRRAVSTEE 133

Length = 210

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 35.9 bits (84), Expect = 0.004
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 26/127 (20%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLV-QHQPTQYPTSEELSIGKIKFKA--FDLGGHQIAR 78
           KI+ +G    GK++LL    D +   Q++ T         IG + FK    ++ G ++  
Sbjct: 2   KIILIGDSGVGKSSLLSRFTDGKFSEQYKST---------IG-VDFKTKTIEVDGKRVKL 51

Query: 79  RVW------------KDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLV 126
           ++W              YY      + + D  ++E F   +  L  L  + A  NV  ++
Sbjct: 52  QIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELR-EYASPNVVIML 110

Query: 127 LGNKIDI 133
           +GNK D+
Sbjct: 111 VGNKSDL 117

Rab GTPases are implicated in vesicle trafficking. Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	193
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	100.0
PLN00223	181	ADP-ribosylation factor; Provisional	100.0
smart00178	184	SAR Sar1p-like members of the Ras-family of small	100.0
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	100.0
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	100.0
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	100.0
PTZ00133	182	ADP-ribosylation factor; Provisional	100.0
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	100.0
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	100.0
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	100.0
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	100.0
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	100.0
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	100.0
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	100.0
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	100.0
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	100.0
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.98
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.98
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.98
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.98
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.98
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.97
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.97
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.97
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.97
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.97
PTZ00369	189	Ras-like protein; Provisional	99.97
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.97
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.97
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.97
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.97
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.97
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.97
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.97
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.97
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.97
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.97
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.97
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.97
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.97
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.97
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.97
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.97
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.97
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.97
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.97
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.97
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.97
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.97
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.97
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.97
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.97
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.97
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.97
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.97
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.97
KOG0394	210	consensus Ras-related GTPase [General function pre	99.97
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.97
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.97
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.97
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.97
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.97
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.96
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.96
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.96
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.96
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.96
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.96
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.96
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.96
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.96
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.96
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.96
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.96
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.96
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.96
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.96
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.96
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.96
PLN03118	211	Rab family protein; Provisional	99.96
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.96
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.96
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.96
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.96
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.96
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.96
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.96
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.96
PLN03110	216	Rab GTPase; Provisional	99.96
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.96
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.96
PLN03108	210	Rab family protein; Provisional	99.96
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.96
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.96
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.96
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.96
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.96
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.96
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.96
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.95
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.95
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.95
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.95
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.95
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.95
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.95
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.95
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.95
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.95
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.95
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.95
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.95
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.95
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.95
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.95
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.94
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.94
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.94
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.94
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.93
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.93
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.93
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.93
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.93
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.93
PRK15494	339	era GTPase Era; Provisional	99.93
KOG0395	196	consensus Ras-related GTPase [General function pre	99.92
PRK12299	335	obgE GTPase CgtA; Reviewed	99.92
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.92
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.92
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.92
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.92
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.92
cd00881	189	GTP_translation_factor GTP translation factor fami	99.92
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.92
PRK04213	201	GTP-binding protein; Provisional	99.91
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.91
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.91
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.91
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.91
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.91
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.91
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.91
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.91
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.91
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.9
PRK03003	472	GTP-binding protein Der; Reviewed	99.9
PRK03003	472	GTP-binding protein Der; Reviewed	99.9
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.9
PRK11058	426	GTPase HflX; Provisional	99.9
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.9
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.9
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.9
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.9
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.89
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.89
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.89
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.89
COG1100	219	GTPase SAR1 and related small G proteins [General	99.89
PLN00023	334	GTP-binding protein; Provisional	99.89
COG1159	298	Era GTPase [General function prediction only]	99.89
PRK00089	292	era GTPase Era; Reviewed	99.89
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.89
PRK12296	500	obgE GTPase CgtA; Reviewed	99.89
COG2229	187	Predicted GTPase [General function prediction only	99.88
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.88
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.88
KOG0090	238	consensus Signal recognition particle receptor, be	99.88
PRK12297	424	obgE GTPase CgtA; Reviewed	99.88
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.88
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.88
PRK00093	435	GTP-binding protein Der; Reviewed	99.88
COG1160	444	Predicted GTPases [General function prediction onl	99.87
PRK05306	787	infB translation initiation factor IF-2; Validated	99.87
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.87
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.87
PRK12298	390	obgE GTPase CgtA; Reviewed	99.87
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.87
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.87
PTZ00099	176	rab6; Provisional	99.86
CHL00189	742	infB translation initiation factor 2; Provisional	99.86
PRK00093	435	GTP-binding protein Der; Reviewed	99.86
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.86
COG0486	454	ThdF Predicted GTPase [General function prediction	99.86
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.86
PRK05433	600	GTP-binding protein LepA; Provisional	99.86
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.86
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.85
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.85
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.84
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.84
COG0218	200	Predicted GTPase [General function prediction only	99.84
COG1160	444	Predicted GTPases [General function prediction onl	99.84
PRK12317	425	elongation factor 1-alpha; Reviewed	99.84
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.83
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.83
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.83
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.83
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.83
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.83
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.82
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.82
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.82
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.82
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.82
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.81
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.81
PRK10218	607	GTP-binding protein; Provisional	99.81
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.8
COG1084	346	Predicted GTPase [General function prediction only	99.8
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.8
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.8
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.79
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.79
PRK04004	586	translation initiation factor IF-2; Validated	99.79
COG2262	411	HflX GTPases [General function prediction only]	99.79
KOG1673	205	consensus Ras GTPases [General function prediction	99.79
PRK12736	394	elongation factor Tu; Reviewed	99.79
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.78
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.78
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.78
PRK12735	396	elongation factor Tu; Reviewed	99.77
PLN03126	478	Elongation factor Tu; Provisional	99.76
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.75
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.75
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.75
PTZ00141	446	elongation factor 1- alpha; Provisional	99.75
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.75
PLN00043	447	elongation factor 1-alpha; Provisional	99.74
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.73
CHL00071	409	tufA elongation factor Tu	99.73
PRK13351	687	elongation factor G; Reviewed	99.73
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.73
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.73
PRK00049	396	elongation factor Tu; Reviewed	99.73
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.73
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.73
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.72
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.72
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.72
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.71
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.71
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.71
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.71
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.7
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.7
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.7
PLN03127	447	Elongation factor Tu; Provisional	99.7
COG3596	296	Predicted GTPase [General function prediction only	99.69
COG1163	365	DRG Predicted GTPase [General function prediction	99.69
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.69
KOG1145	683	consensus Mitochondrial translation initiation fac	99.69
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.68
PRK12739	691	elongation factor G; Reviewed	99.67
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.67
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.66
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.66
COG0536	369	Obg Predicted GTPase [General function prediction	99.66
PRK00007	693	elongation factor G; Reviewed	99.66
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.65
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.65
PRK09866	741	hypothetical protein; Provisional	99.62
PRK12740	668	elongation factor G; Reviewed	99.62
PRK13768	253	GTPase; Provisional	99.59
PRK09602	396	translation-associated GTPase; Reviewed	99.58
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.58
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.58
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.57
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.57
PRK14845	1049	translation initiation factor IF-2; Provisional	99.57
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.56
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.53
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.52
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.51
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.51
PRK07560	731	elongation factor EF-2; Reviewed	99.5
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.5
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.5
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.49
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.45
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.45
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.44
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.44
PTZ00416	836	elongation factor 2; Provisional	99.44
PTZ00258	390	GTP-binding protein; Provisional	99.43
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.42
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.42
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.42
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.41
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.39
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.38
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.38
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.38
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.37
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.35
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.34
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.33
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.33
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.3
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.3
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.29
KOG0410	410	consensus Predicted GTP binding protein [General f	99.29
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.26
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.26
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.25
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.23
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.23
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.23
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.2
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.15
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	99.15
COG5258	527	GTPBP1 GTPase [General function prediction only]	99.15
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.13
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.13
PRK09601	364	GTP-binding protein YchF; Reviewed	99.11
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.1
KOG0099	379	consensus G protein subunit Galphas, small G prote	99.05
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.05
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.04
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.02
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.02
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.01
KOG2486	320	consensus Predicted GTPase [General function predi	99.01
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.0
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.99
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.96
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.96
PRK12289	352	GTPase RsgA; Reviewed	98.95
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.94
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.9
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.86
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.85
KOG1143	591	consensus Predicted translation elongation factor	98.84
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.83
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.82
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.81
PRK00098	298	GTPase RsgA; Reviewed	98.79
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.79
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.78
PRK12288	347	GTPase RsgA; Reviewed	98.78
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.74
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.74
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.74
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.72
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.71
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.71
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	98.7
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.7
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.69
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.68
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.67
KOG0460	449	consensus Mitochondrial translation elongation fac	98.66
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.66
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.66
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.66
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.64
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.64
COG1161	322	Predicted GTPases [General function prediction onl	98.62
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.61
cd03112	158	CobW_like The function of this protein family is u	98.61
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.6
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.57
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.56
PRK14974	336	cell division protein FtsY; Provisional	98.56
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.53
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.53
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.5
PRK10416	318	signal recognition particle-docking protein FtsY;	98.47
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.47
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.45
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.39
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.39
PRK01889	356	GTPase RsgA; Reviewed	98.36
PRK12289	352	GTPase RsgA; Reviewed	98.34
cd03114	148	ArgK-like The function of this protein family is u	98.33
PRK13796	365	GTPase YqeH; Provisional	98.31
PRK12288	347	GTPase RsgA; Reviewed	98.31
PRK13796	365	GTPase YqeH; Provisional	98.31
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.31
COG0523	323	Putative GTPases (G3E family) [General function pr	98.28
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.27
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.25
PRK11537	318	putative GTP-binding protein YjiA; Provisional	98.23
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.21
COG3523	1188	IcmF Type VI protein secretion system component Va	98.2
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	98.17
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.14
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.14
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.13
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.11
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.1
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.07
KOG1534	273	consensus Putative transcription factor FET5 [Tran	98.07
PRK00098	298	GTPase RsgA; Reviewed	98.04
COG1162	301	Predicted GTPases [General function prediction onl	98.03
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.99
PRK04195	482	replication factor C large subunit; Provisional	97.99
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.98
COG4619	223	ABC-type uncharacterized transport system, ATPase	97.97
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.95
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.95
PRK13695	174	putative NTPase; Provisional	97.95
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.95
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.94
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	97.94
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.92
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.91
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.89
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.89
PHA02774	613	E1; Provisional	97.89
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.87
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.86
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.86
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.86
PRK10867	433	signal recognition particle protein; Provisional	97.84
TIGR00959	428	ffh signal recognition particle protein. This mode	97.83
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.83
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.82
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.81
KOG2484	435	consensus GTPase [General function prediction only	97.81
PRK08118	167	topology modulation protein; Reviewed	97.81
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.81
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.78
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.78
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.76
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.76
COG1162	301	Predicted GTPases [General function prediction onl	97.76
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.75
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.75
PRK07261	171	topology modulation protein; Provisional	97.74
PF05729	166	NACHT: NACHT domain	97.74
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.73
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.73
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.71
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	97.71
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.7
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.69
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.67
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.66
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.66
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.66
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.65
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.64
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.64
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	97.63
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.63
PRK14530	215	adenylate kinase; Provisional	97.62
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.61
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.61
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.6
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.59
PRK13833	323	conjugal transfer protein TrbB; Provisional	97.59
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	97.59
cd03111	106	CpaE_like This protein family consists of proteins	97.58
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.58
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.57
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.57
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.56
PRK05480	209	uridine/cytidine kinase; Provisional	97.56
PRK08233	182	hypothetical protein; Provisional	97.55
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.55
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.55
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.54
PRK00411	394	cdc6 cell division control protein 6; Reviewed	97.54
COG2884	223	FtsE Predicted ATPase involved in cell division [C	97.54
cd03116	159	MobB Molybdenum is an essential trace element in t	97.53
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	97.52
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.52
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.51
PRK06217	183	hypothetical protein; Validated	97.51
PF00519	432	PPV_E1_C: Papillomavirus helicase; InterPro: IPR00	97.5
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.5
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.5
PRK03839	180	putative kinase; Provisional	97.49
smart00382	148	AAA ATPases associated with a variety of cellular	97.49
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	97.49
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.48
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	97.48
PF00004	132	AAA: ATPase family associated with various cellula	97.48
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.48
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.48
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.47
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	97.47
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.46
PLN03025	319	replication factor C subunit; Provisional	97.46
COG4559	259	ABC-type hemin transport system, ATPase component	97.45
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.45
PRK14737	186	gmk guanylate kinase; Provisional	97.45
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.45
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.45
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	97.44
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	97.44

>cd00879 Sar1 Sar1 subfamily

Probab=100.00  E-value=6e-34  Score=202.22  Aligned_cols=189  Identities=72%  Similarity=1.190  Sum_probs=157.6

Q ss_pred             hHHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHH
Q 029437            3 LLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWK   82 (193)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~   82 (193)
                      |-+|+.+++..++...+..+|+++|++|||||||++++.+..+..+.||.++....+.+++..+.+||+||+..++..+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~   81 (190)
T cd00879           2 IFDWFYNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWK   81 (190)
T ss_pred             hHHHHHHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHH
Confidence            56788999999998889999999999999999999999998887778888888888888889999999999999888888


Q ss_pred             hhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCC
Q 029437           83 DYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLAD  162 (193)
Q Consensus        83 ~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (193)
                      .+++.+|++++|+|+++.+++.....++..++......+.|+++++||+|+......+++.+.++........ -..+..
T Consensus        82 ~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  160 (190)
T cd00879          82 DYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGK-GVSLKV  160 (190)
T ss_pred             HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccc-cccccc
Confidence            8889999999999999999998888899888876555689999999999998777778888777654421111 011111


Q ss_pred             CCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          163 SNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       163 ~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .......+++|||++|.|++++|+||.+.+
T Consensus       161 ~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         161 SGIRPIEVFMCSVVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             cCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence            122446799999999999999999998754

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=100.00  E-value=2.5e-34  Score=202.41  Aligned_cols=164  Identities=33%  Similarity=0.589  Sum_probs=142.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD   96 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d   96 (193)
                      .++.+||+++|++|||||||++++...++....||.+.+...+.+.+..+.+||+||++.++.++..+++++|++++|+|
T Consensus        14 ~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D   93 (181)
T PLN00223         14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   93 (181)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEe
Confidence            46678999999999999999999998888877889888887888889999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeee
Q 029437           97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIV  176 (193)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  176 (193)
                      +++++++.+...++..+++....++.|+++++||+|+......+++.+.+++...            ..+.+.+++|||+
T Consensus        94 ~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~------------~~~~~~~~~~Sa~  161 (181)
T PLN00223         94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL------------RQRHWYIQSTCAT  161 (181)
T ss_pred             CCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCcccc------------CCCceEEEeccCC
Confidence            9999999999888888876655578999999999999877777788887775431            1133457799999


Q ss_pred             cCCChhhHHHhhhhhc
Q 029437          177 RKMGYGDGFKWLSQYI  192 (193)
Q Consensus       177 ~g~gv~el~~~i~~~~  192 (193)
                      +|+|++++|+||.+.+
T Consensus       162 ~g~gv~e~~~~l~~~~  177 (181)
T PLN00223        162 SGEGLYEGLDWLSNNI  177 (181)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999998765

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=100.00  E-value=4.1e-34  Score=201.98  Aligned_cols=183  Identities=80%  Similarity=1.329  Sum_probs=155.3

Q ss_pred             HHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhh
Q 029437            5 DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDY   84 (193)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~   84 (193)
                      +|+++++.+.+...+.++|+++|++|||||||++++.+..+....||.++....+..++..+.+||+||+..++..+..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~   81 (184)
T smart00178        2 DWFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDY   81 (184)
T ss_pred             hHHHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHH
Confidence            68888888776667889999999999999999999999888777788888888888888999999999999999999999


Q ss_pred             cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCC
Q 029437           85 YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSN  164 (193)
Q Consensus        85 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (193)
                      +..+|++++|+|+++++++.....++..++......+.|+++++||+|+....+.+++.+.+++........     ...
T Consensus        82 ~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~-----~~~  156 (184)
T smart00178       82 FPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKG-----KVG  156 (184)
T ss_pred             hCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCccccccc-----ccC
Confidence            999999999999999999988888888887655556899999999999987778889998887655211100     011


Q ss_pred             CcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          165 VRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .+...+++|||++|.|++++++||.+++
T Consensus       157 ~~~~~i~~~Sa~~~~g~~~~~~wl~~~~  184 (184)
T smart00178      157 VRPLEVFMCSVVRRMGYGEGFKWLSQYI  184 (184)
T ss_pred             CceeEEEEeecccCCChHHHHHHHHhhC
Confidence            2457899999999999999999998763

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04149 Arf6 Arf6 subfamily

Probab=100.00  E-value=4.6e-34  Score=198.90  Aligned_cols=161  Identities=34%  Similarity=0.597  Sum_probs=138.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA   97 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~   97 (193)
                      ++.++|+++|++|||||||++++....+....||.+.....+...++.+.+|||||+++++..+..+++.+|++++|+|+
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~   86 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDS   86 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeC
Confidence            46789999999999999999999988887777888887777778889999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeec
Q 029437           98 YDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVR  177 (193)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  177 (193)
                      +++.++.+...++..++......++|+++++||+|+......+++.+.++....            ......+++|||++
T Consensus        87 t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~SAk~  154 (168)
T cd04149          87 ADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRI------------RDRNWYVQPSCATS  154 (168)
T ss_pred             CchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCcc------------CCCcEEEEEeeCCC
Confidence            999999999999988877655568999999999999766667777777654431            11235789999999


Q ss_pred             CCChhhHHHhhhh
Q 029437          178 KMGYGDGFKWLSQ  190 (193)
Q Consensus       178 g~gv~el~~~i~~  190 (193)
                      |.|++++|+||.+
T Consensus       155 g~gv~~~~~~l~~  167 (168)
T cd04149         155 GDGLYEGLTWLSS  167 (168)
T ss_pred             CCChHHHHHHHhc
Confidence            9999999999975

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=3e-34  Score=200.88  Aligned_cols=174  Identities=42%  Similarity=0.699  Sum_probs=157.4

Q ss_pred             HHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhccc
Q 029437            8 YGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK   87 (193)
Q Consensus         8 ~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~   87 (193)
                      ..++.......++.+|+++|+.||||||+++++...+.....||.+.+...+.+.+..+.+||++|+..++..++.+++.
T Consensus         2 ~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~   81 (175)
T PF00025_consen    2 SSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQN   81 (175)
T ss_dssp             HHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTT
T ss_pred             HHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeeccc
Confidence            45666666678899999999999999999999999888889999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437           88 VDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRP  167 (193)
Q Consensus        88 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (193)
                      +|+++||+|+++++.+.+..+.+..+++.....++|+++++||.|+..+...+++.+.+.+..+.           ..+.
T Consensus        82 ~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~-----------~~~~  150 (175)
T PF00025_consen   82 ADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLK-----------NKRP  150 (175)
T ss_dssp             ESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTT-----------SSSC
T ss_pred             cceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcc-----------cCCc
Confidence            99999999999999999999999999987777899999999999999888889998888866621           1256


Q ss_pred             eEEEEeeeecCCChhhHHHhhhhhc
Q 029437          168 LEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       168 ~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +.++.|||.+|+|+.|.++||.++|
T Consensus       151 ~~v~~~sa~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  151 WSVFSCSAKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             EEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             eEEEeeeccCCcCHHHHHHHHHhcC
Confidence            7899999999999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=100.00  E-value=8e-34  Score=199.02  Aligned_cols=163  Identities=33%  Similarity=0.582  Sum_probs=139.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA   97 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~   97 (193)
                      ++.+||+++|++|||||||++++..+++....||.+.......+....+.+||+||+..++.++..+++++|++++|+|+
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~   90 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDS   90 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEEC
Confidence            55799999999999999999999888877777888887777778889999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeec
Q 029437           98 YDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVR  177 (193)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  177 (193)
                      ++++++++..+++..++......+.|+++++||+|+......+++.+.++....            ..+.+.++++||++
T Consensus        91 t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~Sa~~  158 (175)
T smart00177       91 NDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSI------------RDRNWYIQPTCATS  158 (175)
T ss_pred             CCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCcccc------------CCCcEEEEEeeCCC
Confidence            999999999999999876655568999999999999866666777776664431            11345688999999


Q ss_pred             CCChhhHHHhhhhhc
Q 029437          178 KMGYGDGFKWLSQYI  192 (193)
Q Consensus       178 g~gv~el~~~i~~~~  192 (193)
                      |.|++++|+||.+.+
T Consensus       159 g~gv~e~~~~l~~~~  173 (175)
T smart00177      159 GDGLYEGLTWLSNNL  173 (175)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=100.00  E-value=1.5e-33  Score=198.68  Aligned_cols=164  Identities=35%  Similarity=0.627  Sum_probs=139.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD   96 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d   96 (193)
                      .+.++||+++|++|||||||++++..+++....||.+.+...+.+.++.+.+|||||++.++..+..++..+|++|+|+|
T Consensus        14 ~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D   93 (182)
T PTZ00133         14 GKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVD   93 (182)
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence            45569999999999999999999988888877788888877788888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeee
Q 029437           97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIV  176 (193)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  176 (193)
                      +++++++.....++..++......+.|+++++||.|+......+++...++...+            ....+.++++||+
T Consensus        94 ~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~------------~~~~~~~~~~Sa~  161 (182)
T PTZ00133         94 SNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSV------------RQRNWYIQGCCAT  161 (182)
T ss_pred             CCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcc------------cCCcEEEEeeeCC
Confidence            9999999999888888876544567999999999999766666777776665431            1133567899999


Q ss_pred             cCCChhhHHHhhhhhc
Q 029437          177 RKMGYGDGFKWLSQYI  192 (193)
Q Consensus       177 ~g~gv~el~~~i~~~~  192 (193)
                      +|.|++++|+||.+.+
T Consensus       162 tg~gv~e~~~~l~~~i  177 (182)
T PTZ00133        162 TAQGLYEGLDWLSANI  177 (182)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999998764

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=100.00  E-value=2.8e-33  Score=193.40  Aligned_cols=158  Identities=34%  Similarity=0.602  Sum_probs=133.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCCh
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDK  100 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~  100 (193)
                      +||+++|.+|||||||++++...++....||.+.+...+.+..+.+.+||+||++++...+..+++++|++++|+|++++
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~   80 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   80 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence            48999999999999999999888888777888887777788889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCC
Q 029437          101 ERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG  180 (193)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  180 (193)
                      .++++..+++..++......+.|+++++||+|+......+++...+.....            ..+.+.+++|||++|.|
T Consensus        81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~Sak~g~g  148 (159)
T cd04150          81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSL------------RNRNWYIQATCATSGDG  148 (159)
T ss_pred             HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccc------------CCCCEEEEEeeCCCCCC
Confidence            999999998988876544467999999999999765555566555543321            01335688999999999


Q ss_pred             hhhHHHhhhh
Q 029437          181 YGDGFKWLSQ  190 (193)
Q Consensus       181 v~el~~~i~~  190 (193)
                      ++++|+||.+
T Consensus       149 v~~~~~~l~~  158 (159)
T cd04150         149 LYEGLDWLSN  158 (159)
T ss_pred             HHHHHHHHhc
Confidence            9999999964

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04154 Arl2 Arl2 subfamily

Probab=100.00  E-value=9.9e-33  Score=193.21  Aligned_cols=164  Identities=38%  Similarity=0.612  Sum_probs=138.2

Q ss_pred             CCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437           15 GLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL   94 (193)
Q Consensus        15 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v   94 (193)
                      +..+..++|+++|++|||||||++++.+..+....+|.+.....+.+++..+.+||+||++.++.++..++..+|++++|
T Consensus         9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (173)
T cd04154           9 KLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWV   88 (173)
T ss_pred             hcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence            34567789999999999999999999988777777888877777888889999999999999988888899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEee
Q 029437           95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS  174 (193)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  174 (193)
                      +|++++.++.+...++..++......+.|+++++||+|+......+++.+.+....            .....+++++||
T Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~S  156 (173)
T cd04154          89 VDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDK------------ISSHHWRIQPCS  156 (173)
T ss_pred             EECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccc------------cCCCceEEEecc
Confidence            99999999999888888887655557899999999999986656666666554332            011346899999


Q ss_pred             eecCCChhhHHHhhhh
Q 029437          175 IVRKMGYGDGFKWLSQ  190 (193)
Q Consensus       175 a~~g~gv~el~~~i~~  190 (193)
                      |++|.|++++|+||.+
T Consensus       157 a~~g~gi~~l~~~l~~  172 (173)
T cd04154         157 AVTGEGLLQGIDWLVD  172 (173)
T ss_pred             CCCCcCHHHHHHHHhc
Confidence            9999999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=100.00  E-value=2e-32  Score=191.82  Aligned_cols=161  Identities=34%  Similarity=0.600  Sum_probs=138.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA   97 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~   97 (193)
                      ++.++|+++|++|+|||||++++....+....||.+.+...+.+.+..+.+||+||+..+...+..+++.+|++++|+|+
T Consensus        13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~   92 (174)
T cd04153          13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDS   92 (174)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEEC
Confidence            35689999999999999999999998888888888888888888899999999999999998888899999999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeec
Q 029437           98 YDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVR  177 (193)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  177 (193)
                      ++++++....+++..++......+.|+++++||+|+....+.+++.+.++....            ....+++++|||++
T Consensus        93 s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~------------~~~~~~~~~~SA~~  160 (174)
T cd04153          93 TDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSI------------RDHTWHIQGCCALT  160 (174)
T ss_pred             CCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccc------------cCCceEEEecccCC
Confidence            999999888888888876655568999999999999766666777777664431            01235789999999


Q ss_pred             CCChhhHHHhhhh
Q 029437          178 KMGYGDGFKWLSQ  190 (193)
Q Consensus       178 g~gv~el~~~i~~  190 (193)
                      |.|++++|+||.+
T Consensus       161 g~gi~e~~~~l~~  173 (174)
T cd04153         161 GEGLPEGLDWIAS  173 (174)
T ss_pred             CCCHHHHHHHHhc
Confidence            9999999999975

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04158 ARD1 ARD1 subfamily

Probab=100.00  E-value=1.8e-32  Score=191.15  Aligned_cols=160  Identities=35%  Similarity=0.597  Sum_probs=134.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE  101 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~  101 (193)
                      ||+++|++|||||||++++.+..+....||.+.....+.+.+..+.+||+||+..++..+..++..+|++++|+|+++++
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~   80 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD   80 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence            58999999999999999999988877778888777778888999999999999999888888999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCCh
Q 029437          102 RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGY  181 (193)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv  181 (193)
                      ++.++..++..++......+.|+++++||+|+.+....+++.+.+.....           .......+++|||++|.|+
T Consensus        81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~Sa~~g~gv  149 (169)
T cd04158          81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKL-----------CCGRSWYIQGCDARSGMGL  149 (169)
T ss_pred             HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccc-----------cCCCcEEEEeCcCCCCCCH
Confidence            99999999999986655567899999999999866666666655542220           0012357889999999999


Q ss_pred             hhHHHhhhhhc
Q 029437          182 GDGFKWLSQYI  192 (193)
Q Consensus       182 ~el~~~i~~~~  192 (193)
                      +++|+||.+.+
T Consensus       150 ~~~f~~l~~~~  160 (169)
T cd04158         150 YEGLDWLSRQL  160 (169)
T ss_pred             HHHHHHHHHHH
Confidence            99999998754

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=100.00  E-value=5e-32  Score=188.58  Aligned_cols=161  Identities=34%  Similarity=0.507  Sum_probs=136.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE  101 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~  101 (193)
                      +|+++|++|||||||++++.+.......||.+.....+...+..+.+||+||+..++.++..+++.+|++++|+|++++.
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~   80 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD   80 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence            48999999999999999999874445678888888888888999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecC---
Q 029437          102 RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK---  178 (193)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g---  178 (193)
                      ++++...++..++......++|+++++||+|+.......++.+.+....         +.+.....+.+++|||++|   
T Consensus        81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~---------~~~~~~~~~~~~~~Sa~~g~~~  151 (167)
T cd04161          81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEK---------LVNENKSLCHIEPCSAIEGLGK  151 (167)
T ss_pred             HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCccc---------ccCCCCceEEEEEeEceeCCCC
Confidence            9999999999887665556899999999999987777788877776554         1222224568899999998   


Q ss_pred             ---CChhhHHHhhhhh
Q 029437          179 ---MGYGDGFKWLSQY  191 (193)
Q Consensus       179 ---~gv~el~~~i~~~  191 (193)
                         .|+++.|+||..+
T Consensus       152 ~~~~g~~~~~~wl~~~  167 (167)
T cd04161         152 KIDPSIVEGLRWLLAA  167 (167)
T ss_pred             ccccCHHHHHHHHhcC
Confidence               8999999999763

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=100.00  E-value=5.1e-32  Score=178.88  Aligned_cols=171  Identities=36%  Similarity=0.572  Sum_probs=153.4

Q ss_pred             HHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCE
Q 029437           11 LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDA   90 (193)
Q Consensus        11 ~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~   90 (193)
                      +..++..+++++|+++|..||||||+++++.+.......||.+.+...+.++++.+++||.+|+...++.++.|+.+.|+
T Consensus         7 lrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdg   86 (185)
T KOG0073|consen    7 LRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDG   86 (185)
T ss_pred             HHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCe
Confidence            33444556699999999999999999999999998888899999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           91 VVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        91 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      +++|+|++|+.++++....+...+......+.|+++++||.|+.++...+++...+++..+         .  ....+++
T Consensus        87 lIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l---------~--ks~~~~l  155 (185)
T KOG0073|consen   87 LIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEEL---------A--KSHHWRL  155 (185)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHh---------c--cccCceE
Confidence            9999999999999999999999988777778999999999999989999999888876652         1  2356899


Q ss_pred             EEeeeecCCChhhHHHhhhhhc
Q 029437          171 FMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       171 ~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +.|||.+|+++.+.++||++.+
T Consensus       156 ~~cs~~tge~l~~gidWL~~~l  177 (185)
T KOG0073|consen  156 VKCSAVTGEDLLEGIDWLCDDL  177 (185)
T ss_pred             EEEeccccccHHHHHHHHHHHH
Confidence            9999999999999999998754

>cd04151 Arl1 Arl1 subfamily

Probab=100.00  E-value=1.4e-31  Score=184.74  Aligned_cols=157  Identities=40%  Similarity=0.691  Sum_probs=130.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE  101 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~  101 (193)
                      ||+++|++|+|||||++++....+....||.+.+...+.+.+..+.+|||||+..++.++..++..+|++++|+|++++.
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~   80 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD   80 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence            58999999999999999998888777778888777778888899999999999999998899999999999999999998


Q ss_pred             hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCCh
Q 029437          102 RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGY  181 (193)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv  181 (193)
                      ++....+++..+++.....+.|+++++||+|+.......++...+.....            .....+++++||++|.|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~Sa~~~~gi  148 (158)
T cd04151          81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSEL------------KDRTWSIFKTSAIKGEGL  148 (158)
T ss_pred             HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCcccc------------CCCcEEEEEeeccCCCCH
Confidence            88777777777766545568999999999999765555566555543220            012357999999999999


Q ss_pred             hhHHHhhhh
Q 029437          182 GDGFKWLSQ  190 (193)
Q Consensus       182 ~el~~~i~~  190 (193)
                      +++|++|.+
T Consensus       149 ~~l~~~l~~  157 (158)
T cd04151         149 DEGMDWLVN  157 (158)
T ss_pred             HHHHHHHhc
Confidence            999999975

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.9e-32  Score=185.71  Aligned_cols=157  Identities=25%  Similarity=0.350  Sum_probs=128.4

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEE--eCCEEEEEEEcCChhhhHhhHHhhcccCCE
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELS--IGKIKFKAFDLGGHQIARRVWKDYYAKVDA   90 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~   90 (193)
                      ..+..+||+|+|++|+|||.|+.++....|.. +..|++..  ...++  ...+++++|||+|+++++.+..++++++|+
T Consensus         5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahG   84 (205)
T KOG0084|consen    5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   84 (205)
T ss_pred             ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCe
Confidence            46788999999999999999999999999987 44566653  33444  445899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHH---HHhhCCCccccCCCccccCCCCC
Q 029437           91 VVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEEL---RYHLGLSNFTTGKGKVNLADSNV  165 (193)
Q Consensus        91 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  165 (193)
                      ||+|||+++.+||..+..|+.++-. ....++|.++|+||+|+..  ..+.++.   ...++.+                
T Consensus        85 ii~vyDiT~~~SF~~v~~Wi~Ei~~-~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~----------------  147 (205)
T KOG0084|consen   85 IIFVYDITKQESFNNVKRWIQEIDR-YASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIP----------------  147 (205)
T ss_pred             EEEEEEcccHHHhhhHHHHHHHhhh-hccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCc----------------
Confidence            9999999999999999999999954 4556899999999999983  3333332   2222222                


Q ss_pred             cceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          166 RPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       166 ~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                         .++++||+.+.||++.|..|...+
T Consensus       148 ---~f~ETSAK~~~NVe~~F~~la~~l  171 (205)
T KOG0084|consen  148 ---IFLETSAKDSTNVEDAFLTLAKEL  171 (205)
T ss_pred             ---ceeecccCCccCHHHHHHHHHHHH
Confidence               279999999999999999887654

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.8e-32  Score=184.53  Aligned_cols=165  Identities=36%  Similarity=0.624  Sum_probs=154.5

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      ...++.+|+++|-.+|||||+++++...++....||++.+.+.+.++++++++||.+|+.+++..+.+++++.+++|||+
T Consensus        13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVv   92 (181)
T KOG0070|consen   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVV   92 (181)
T ss_pred             cCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEE
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI  175 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  175 (193)
                      |++|++.+.+..+.+..++.+....+.|+++.+||.|++.+.+..++.+.+++..+         .+   +...+..|+|
T Consensus        93 DS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l---------~~---~~w~iq~~~a  160 (181)
T KOG0070|consen   93 DSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSL---------RS---RNWHIQSTCA  160 (181)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhcc---------CC---CCcEEeeccc
Confidence            99999999999999999999888889999999999999999999999999987773         22   5577889999


Q ss_pred             ecCCChhhHHHhhhhhc
Q 029437          176 VRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       176 ~~g~gv~el~~~i~~~~  192 (193)
                      .+|+|+.|.++||.+.+
T Consensus       161 ~~G~GL~egl~wl~~~~  177 (181)
T KOG0070|consen  161 ISGEGLYEGLDWLSNNL  177 (181)
T ss_pred             cccccHHHHHHHHHHHH
Confidence            99999999999998865

>cd04157 Arl6 Arl6 subfamily

Probab=100.00  E-value=5.1e-31  Score=182.46  Aligned_cols=158  Identities=33%  Similarity=0.625  Sum_probs=128.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc-c-ccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERL-V-QHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYD   99 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~-~-~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~   99 (193)
                      +|+++|++|||||||++++.+..+ . ...||.+.....+...+..+.+|||||+.++...+..+++.+|++++|+|+++
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~   80 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD   80 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence            589999999999999999998753 2 35678877776677788999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHcCCC--CCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeec
Q 029437          100 KERFAESKKELDALLSDEA--LANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVR  177 (193)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~--~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  177 (193)
                      +.++.....++..++....  ..++|+++++||+|+......+++...++....            ......++++||++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~------------~~~~~~~~~~Sa~~  148 (162)
T cd04157          81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENI------------KDKPWHIFASNALT  148 (162)
T ss_pred             HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccc------------cCceEEEEEeeCCC
Confidence            9988888888887765432  258999999999999866555566555543320            11235789999999


Q ss_pred             CCChhhHHHhhhhh
Q 029437          178 KMGYGDGFKWLSQY  191 (193)
Q Consensus       178 g~gv~el~~~i~~~  191 (193)
                      |.|++++|+||.++
T Consensus       149 g~gv~~~~~~l~~~  162 (162)
T cd04157         149 GEGLDEGVQWLQAQ  162 (162)
T ss_pred             CCchHHHHHHHhcC
Confidence            99999999999763

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.6e-32  Score=182.75  Aligned_cols=157  Identities=22%  Similarity=0.347  Sum_probs=131.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc--eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      ..++|++++|+.++|||||+.++..+.|... .+|++-.  ...+...+  +++.+|||+|+++|..+.++++++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            4578999999999999999999999999884 7888754  33444444  88999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      +|||+++.+||..+..|..++-.... +++-+.+++||+|+..  ++..++....-....                 ..+
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~g-----------------ll~  144 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYAESQG-----------------LLF  144 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHHHhcC-----------------CEE
Confidence            99999999999999999999965544 7788889999999984  555555443333222                 568


Q ss_pred             EEeeeecCCChhhHHHhhhhhc
Q 029437          171 FMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       171 ~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++||++|.|++++|..|.+.+
T Consensus       145 ~ETSAKTg~Nv~~if~~Ia~~l  166 (200)
T KOG0092|consen  145 FETSAKTGENVNEIFQAIAEKL  166 (200)
T ss_pred             EEEecccccCHHHHHHHHHHhc
Confidence            9999999999999999998765

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=100.00  E-value=7.8e-31  Score=185.13  Aligned_cols=163  Identities=36%  Similarity=0.534  Sum_probs=130.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEe-----CCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSI-----GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      +.++|+++|++|||||||++++...++....||.+........     .+..+.+|||||++++..++..+++.+|++++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            3589999999999999999999998887777777665554433     45789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      |+|+++++++.....++..+.......+.|+++++||+|+......+++....+....           .....+.+++|
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~  150 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHEL-----------SASTPWHVQPA  150 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCcccc-----------CCCCceEEEEe
Confidence            9999999988888888887765544468999999999999765555655544442220           00023568999


Q ss_pred             eeecCCChhhHHHhhhhhc
Q 029437          174 SIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~~  192 (193)
                      ||++|.|+++++++|.+.+
T Consensus       151 SA~~~~gi~~l~~~l~~~l  169 (183)
T cd04152         151 CAIIGEGLQEGLEKLYEMI  169 (183)
T ss_pred             ecccCCCHHHHHHHHHHHH
Confidence            9999999999999998764

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=100.00  E-value=6.7e-31  Score=181.59  Aligned_cols=158  Identities=38%  Similarity=0.622  Sum_probs=130.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeC-CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCCh
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIG-KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDK  100 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~  100 (193)
                      +|+++|++|||||||++++.+.++....||.+.....+... ...+.+||+||+..+...+..++..+|++++|+|++++
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~   80 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE   80 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence            58999999999999999999999877778877766666553 57899999999999988888889999999999999999


Q ss_pred             hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCC
Q 029437          101 ERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG  180 (193)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  180 (193)
                      .++.....++..++......+.|+++++||+|+......+++...++....         .  .....++++|||++|.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~---------~--~~~~~~~~~~Sa~~~~g  149 (160)
T cd04156          81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKY---------C--SDRDWYVQPCSAVTGEG  149 (160)
T ss_pred             HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCccc---------C--CCCcEEEEecccccCCC
Confidence            999999999988876655568999999999999765556666655543221         0  01235789999999999


Q ss_pred             hhhHHHhhhh
Q 029437          181 YGDGFKWLSQ  190 (193)
Q Consensus       181 v~el~~~i~~  190 (193)
                      ++++|++|.+
T Consensus       150 v~~~~~~i~~  159 (160)
T cd04156         150 LAEAFRKLAS  159 (160)
T ss_pred             hHHHHHHHhc
Confidence            9999999965

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=4.8e-31  Score=186.40  Aligned_cols=157  Identities=15%  Similarity=0.280  Sum_probs=124.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      ....+||+++|++|+|||||+.++....+... .++.+.  ....+..++  +.+.+|||+|++++..++..+++++|++
T Consensus         3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            34568999999999999999999998877643 344443  233344444  7899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      |+|+|++++.+++++..|+..+...  .++.|+++|+||.|+..  ..+.++.......                 ..+.
T Consensus        83 llVfD~t~~~Sf~~~~~w~~~i~~~--~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~-----------------~~~~  143 (189)
T cd04121          83 ILVYDITNRWSFDGIDRWIKEIDEH--APGVPKILVGNRLHLAFKRQVATEQAQAYAER-----------------NGMT  143 (189)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccchhccCCCHHHHHHHHHH-----------------cCCE
Confidence            9999999999999999988888543  36899999999999963  3344433222211                 2257


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++|||++|.||+++|++|.+.+
T Consensus       144 ~~e~SAk~g~~V~~~F~~l~~~i  166 (189)
T cd04121         144 FFEVSPLCNFNITESFTELARIV  166 (189)
T ss_pred             EEEecCCCCCCHHHHHHHHHHHH
Confidence            89999999999999999998754

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04155 Arl3 Arl3 subfamily

Probab=99.98  E-value=2.1e-30  Score=181.37  Aligned_cols=164  Identities=36%  Similarity=0.627  Sum_probs=137.9

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      .....++|+++|++|||||||++++.+..+....+|.+.+...+...+..+.+||+||+..+...+..+++.+|++++|+
T Consensus        10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   89 (173)
T cd04155          10 KSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVI   89 (173)
T ss_pred             ccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence            44568999999999999999999999988777778888887788888899999999999988888888889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI  175 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  175 (193)
                      |+++..++.....++...+......++|+++++||+|+......+++.+.++....            ..+...+++|||
T Consensus        90 D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~------------~~~~~~~~~~Sa  157 (173)
T cd04155          90 DSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDL------------RDRTWHIQACSA  157 (173)
T ss_pred             eCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCccc------------CCCeEEEEEeEC
Confidence            99999888888888888876555568999999999999866666677666654431            113356789999


Q ss_pred             ecCCChhhHHHhhhhh
Q 029437          176 VRKMGYGDGFKWLSQY  191 (193)
Q Consensus       176 ~~g~gv~el~~~i~~~  191 (193)
                      ++|+|++++|+||.++
T Consensus       158 ~~~~gi~~~~~~l~~~  173 (173)
T cd04155         158 KTGEGLQEGMNWVCKN  173 (173)
T ss_pred             CCCCCHHHHHHHHhcC
Confidence            9999999999999863

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.98  E-value=1.7e-30  Score=179.22  Aligned_cols=157  Identities=40%  Similarity=0.664  Sum_probs=136.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE  101 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~  101 (193)
                      ||+++|++|||||||++++.+..+....+|.+.....+.+....+.+||+||+..+...+..+++.+|++++|+|+++++
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~   80 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE   80 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence            58999999999999999999998777778888888888888999999999999999989899999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCCh
Q 029437          102 RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGY  181 (193)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv  181 (193)
                      ++.....++..+.......+.|+++++||+|+......+++.+.++...            ......+++++||++|.|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~gv  148 (158)
T cd00878          81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEK------------ILGRRWHIQPCSAVTGDGL  148 (158)
T ss_pred             HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhh------------ccCCcEEEEEeeCCCCCCH
Confidence            9999999998887765567899999999999986666667766665432            1113468999999999999


Q ss_pred             hhHHHhhhh
Q 029437          182 GDGFKWLSQ  190 (193)
Q Consensus       182 ~el~~~i~~  190 (193)
                      +++|++|..
T Consensus       149 ~~~~~~l~~  157 (158)
T cd00878         149 DEGLDWLLQ  157 (158)
T ss_pred             HHHHHHHhh
Confidence            999999975

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=2.1e-31  Score=176.40  Aligned_cols=193  Identities=81%  Similarity=1.298  Sum_probs=181.4

Q ss_pred             CchHHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhh
Q 029437            1 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRV   80 (193)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~   80 (193)
                      |++.+||..+++..+..++.=|+++.|-.|+|||||++.+..+...+..||..++.+.+...+.+++.+|.+|+...+..
T Consensus         1 ~fl~ewF~~VLq~LgL~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~   80 (193)
T KOG0077|consen    1 SFLFEWFSSVLQFLGLYKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRV   80 (193)
T ss_pred             CcHHHHHHHHHHHHHHhccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCcccc
Q 029437           81 WKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNL  160 (193)
Q Consensus        81 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (193)
                      +..++..+|++++.+|+.|.+.+.+....+..++......++|+++++||+|.+++.+.+++...+++......+...+.
T Consensus        81 wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~  160 (193)
T KOG0077|consen   81 WKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNL  160 (193)
T ss_pred             HHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccc
Confidence            99999999999999999999999999999999988777789999999999999999999999999998887777777777


Q ss_pred             CCCCCcceEEEEeeeecCCChhhHHHhhhhhcC
Q 029437          161 ADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       161 ~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~~  193 (193)
                      .....+...++.||...+.|..+.|.|+...+.
T Consensus       161 ~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi~  193 (193)
T KOG0077|consen  161 TDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK  193 (193)
T ss_pred             cCCCCCeEEEEEEEEEccCccceeeeehhhhcC
Confidence            777778899999999999999999999988763

>cd01875 RhoG RhoG subfamily

Probab=99.98  E-value=3.1e-31  Score=188.32  Aligned_cols=170  Identities=17%  Similarity=0.247  Sum_probs=121.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee-E--EEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE-E--LSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL   94 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v   94 (193)
                      ..+||+++|++|+|||||+.++..+.|.. +.||.+.... .  +....+.+.+|||+|+++++.++..+++++|++++|
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            56899999999999999999999998854 5567654332 2  223347899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           95 VDAYDKERFAESKK-ELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        95 ~d~~~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      +|++++++|+++.. |...+..  ..++.|+++|+||.|+.......+............. ....+++. .+...+++|
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~--~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~-~~~~~a~~-~~~~~~~e~  157 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCH--HCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQ-QGGALAKQ-IHAVKYLEC  157 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh--hCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHH-HHHHHHHH-cCCcEEEEe
Confidence            99999999999975 4444432  2358999999999999643221111111111110000 00111111 123579999


Q ss_pred             eeecCCChhhHHHhhhhhc
Q 029437          174 SIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~~  192 (193)
                      ||++|.|++++|++|.+.+
T Consensus       158 SAk~g~~v~e~f~~l~~~~  176 (191)
T cd01875         158 SALNQDGVKEVFAEAVRAV  176 (191)
T ss_pred             CCCCCCCHHHHHHHHHHHH
Confidence            9999999999999998754

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.98  E-value=2.2e-30  Score=180.18  Aligned_cols=160  Identities=38%  Similarity=0.618  Sum_probs=130.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc-------cccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERL-------VQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL   94 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v   94 (193)
                      +|+++|++|||||||++++.+...       ....+|.+.+...+.+++..+.+|||||+..+..++..++..+|++++|
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v   80 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV   80 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence            589999999999999999975432       2345677777888888899999999999999999888899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEee
Q 029437           95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS  174 (193)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  174 (193)
                      +|+++++++.....++..++......+.|+++++||+|+......+++.+.+......          ......+++++|
T Consensus        81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~S  150 (167)
T cd04160          81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEE----------IGRRDCLVLPVS  150 (167)
T ss_pred             EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhcccccc----------ccCCceEEEEee
Confidence            9999998888888888888766555789999999999998766666665555433210          011346899999


Q ss_pred             eecCCChhhHHHhhhhh
Q 029437          175 IVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       175 a~~g~gv~el~~~i~~~  191 (193)
                      |++|.|++++++||..+
T Consensus       151 a~~g~gv~e~~~~l~~~  167 (167)
T cd04160         151 ALEGTGVREGIEWLVER  167 (167)
T ss_pred             CCCCcCHHHHHHHHhcC
Confidence            99999999999999753

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04120 Rab12 Rab12 subfamily

Probab=99.97  E-value=1.1e-30  Score=186.23  Aligned_cols=154  Identities=18%  Similarity=0.304  Sum_probs=120.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD   96 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d   96 (193)
                      .|+++|++|+|||||++++..+.|.. ..+|.+.  ....+.+++  +.+.+|||+|+++++.++..+++++|++++|+|
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfD   81 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYD   81 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999999998876 3456543  334455554  788999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEee
Q 029437           97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS  174 (193)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  174 (193)
                      ++++++|+++..|+..+ ......+.|+++|+||+|+..  .....+.. ++....               ....+++||
T Consensus        82 vtd~~Sf~~l~~w~~~i-~~~~~~~~piilVgNK~DL~~~~~v~~~~~~-~~a~~~---------------~~~~~~etS  144 (202)
T cd04120          82 ITKKETFDDLPKWMKMI-DKYASEDAELLLVGNKLDCETDREISRQQGE-KFAQQI---------------TGMRFCEAS  144 (202)
T ss_pred             CcCHHHHHHHHHHHHHH-HHhCCCCCcEEEEEECcccccccccCHHHHH-HHHHhc---------------CCCEEEEec
Confidence            99999999998887755 333446899999999999963  22222221 111000               125689999


Q ss_pred             eecCCChhhHHHhhhhhc
Q 029437          175 IVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       175 a~~g~gv~el~~~i~~~~  192 (193)
                      |++|.||+++|++|.+.+
T Consensus       145 Aktg~gV~e~F~~l~~~~  162 (202)
T cd04120         145 AKDNFNVDEIFLKLVDDI  162 (202)
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999999998754

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.5e-31  Score=179.44  Aligned_cols=159  Identities=21%  Similarity=0.283  Sum_probs=129.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      ..+.+|++++|+.++|||||+++++.+.|.. +.+|++..  ..++.+  ..+++++|||+|+++|+.+.+.+++++.++
T Consensus        19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va   98 (221)
T KOG0094|consen   19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   98 (221)
T ss_pred             cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence            4566999999999999999999999999876 56787764  334444  457899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++|+|+++..+|++..+|+.+...+....++-+++|+||.||...  ...+|-.     ..   ++         .-...
T Consensus        99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~-----~k---Ak---------el~a~  161 (221)
T KOG0094|consen   99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGE-----RK---AK---------ELNAE  161 (221)
T ss_pred             EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHH-----HH---HH---------HhCcE
Confidence            999999999999999999999998877767889999999999843  2222211     11   00         02247


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++++||+.|.||.++|..|...+
T Consensus       162 f~etsak~g~NVk~lFrrIaa~l  184 (221)
T KOG0094|consen  162 FIETSAKAGENVKQLFRRIAAAL  184 (221)
T ss_pred             EEEecccCCCCHHHHHHHHHHhc
Confidence            89999999999999999887654

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.97  E-value=1.3e-30  Score=182.24  Aligned_cols=156  Identities=20%  Similarity=0.273  Sum_probs=121.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      .+||+++|.+|+|||||++++....+.. ..||.+... ..+..++  ..+.+|||||+..+..++..++..+|++++|+
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~   81 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY   81 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence            4799999999999999999999998864 456665332 2344443  67999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      |++++.+++.+..|+..+......+++|+++++||+|+...  .+.++......  .               ..+++++|
T Consensus        82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~--~---------------~~~~~~e~  144 (172)
T cd04141          82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAR--E---------------FNCPFFET  144 (172)
T ss_pred             ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHH--H---------------hCCEEEEE
Confidence            99999999999887766654334468999999999998632  23222211110  0               23578999


Q ss_pred             eeecCCChhhHHHhhhhhc
Q 029437          174 SIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~~  192 (193)
                      ||++|.||+++|++|.+.+
T Consensus       145 Sa~~~~~v~~~f~~l~~~~  163 (172)
T cd04141         145 SAALRHYIDDAFHGLVREI  163 (172)
T ss_pred             ecCCCCCHHHHHHHHHHHH
Confidence            9999999999999998654

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04126 Rab20 Rab20 subfamily

Probab=99.97  E-value=1.9e-30  Score=187.04  Aligned_cols=165  Identities=21%  Similarity=0.232  Sum_probs=126.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCCh
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDK  100 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~  100 (193)
                      +||+++|.+|+|||||++++..+.|....+|.+.......+..+.+.+|||+|++.+..+...+++.+|++|+|+|++++
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~   80 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV   80 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence            58999999999999999999999988777788776665666778899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC---------------------CCHHHH---HHhhCCCccccCCC
Q 029437          101 ERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA---------------------ASEEEL---RYHLGLSNFTTGKG  156 (193)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~---------------------~~~~~~---~~~~~~~~~~~~~~  156 (193)
                      +++..+..|+..+... ...+.|+|+|+||+|+...                     ...++.   .+..+...    .-
T Consensus        81 ~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~----~~  155 (220)
T cd04126          81 QSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYK----ML  155 (220)
T ss_pred             HHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccc----cc
Confidence            9999999998887653 3467999999999998641                     111111   11111000    00


Q ss_pred             ccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          157 KVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       157 ~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .+++.-  .....+++|||++|.||+++|+.|.+.+
T Consensus       156 ~~~~~~--~~~~~~~E~SA~tg~~V~elf~~i~~~~  189 (220)
T cd04126         156 DEDLSP--AAEKMCFETSAKTGYNVDELFEYLFNLV  189 (220)
T ss_pred             cccccc--cccceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            001110  0125799999999999999999998754

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04175 Rap1 Rap1 subgroup

Probab=99.97  E-value=3e-30  Score=179.05  Aligned_cols=156  Identities=19%  Similarity=0.265  Sum_probs=122.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      ++||+++|++|||||||++++..+.+.. ..||.+.. ...+..+  ...+.+|||||++.+..++..+++.+|++++|+
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            4799999999999999999999887754 33555432 2334444  467789999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      |++++.+++.+.+|+..+.......+.|+++++||+|+....  ..++.. .+...                ...++++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~~~----------------~~~~~~~~  143 (164)
T cd04175          81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQ-NLARQ----------------WGCAFLET  143 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHH-HHHHH----------------hCCEEEEe
Confidence            999999999999999998766556789999999999997432  222211 11111                12478999


Q ss_pred             eeecCCChhhHHHhhhhhc
Q 029437          174 SIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~~  192 (193)
                      ||++|.|++++|++|.+++
T Consensus       144 Sa~~~~~v~~~~~~l~~~l  162 (164)
T cd04175         144 SAKAKINVNEIFYDLVRQI  162 (164)
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998865

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=1e-29  Score=176.40  Aligned_cols=155  Identities=34%  Similarity=0.488  Sum_probs=128.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh
Q 029437           23 ILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE  101 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~  101 (193)
                      |+++|++|||||||++++.+..+.. ..||.+.....+...+..+.+||+||+..++.++..+++++|++++|+|++++.
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~   81 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE   81 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence            7899999999999999999887654 567877777777888899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeec----
Q 029437          102 RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVR----  177 (193)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~----  177 (193)
                      ++.....++..+....  +++|+++++||+|+......+++...++...+         ++  ...+.+++|||++    
T Consensus        82 s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~---------~~--~~~~~~~~~Sa~~~~s~  148 (164)
T cd04162          82 RLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPI---------AR--GRRWILQGTSLDDDGSP  148 (164)
T ss_pred             HHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhh---------cC--CCceEEEEeeecCCCCh
Confidence            9999988888886432  68999999999999876666666666554431         11  1235677888777    


Q ss_pred             --CCChhhHHHhhhh
Q 029437          178 --KMGYGDGFKWLSQ  190 (193)
Q Consensus       178 --g~gv~el~~~i~~  190 (193)
                        ++||+++|+.+..
T Consensus       149 ~~~~~v~~~~~~~~~  163 (164)
T cd04162         149 SRMEAVKDLLSQLIN  163 (164)
T ss_pred             hHHHHHHHHHHHHhc
Confidence              9999999998753

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.97  E-value=5.8e-30  Score=183.25  Aligned_cols=156  Identities=19%  Similarity=0.237  Sum_probs=122.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC---CEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG---KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL   94 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~---~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v   94 (193)
                      +||+++|++|||||||++++.+..+.. ..||.+..  ...+..+   .+.+.+|||||++.+..++..+++++|++++|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999988765 45666533  2334433   57899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCC---CCCCCcEEEEEeCCCCC--CCCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           95 VDAYDKERFAESKKELDALLSDE---ALANVPFLVLGNKIDIP--YAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~---~~~~~pviiv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      +|++++++++.+..|+..+....   ...++|+++|+||+|+.  +....+++.+.... .               ....
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~---------------~~~~  144 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKE-N---------------GFIG  144 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHH-c---------------CCce
Confidence            99999999999988877664322   23689999999999996  34444444333221 1               1246


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++|||++|.|++++|++|.+.+
T Consensus       145 ~~e~Sak~~~~v~e~f~~l~~~l  167 (201)
T cd04107         145 WFETSAKEGINIEEAMRFLVKNI  167 (201)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999999999998754

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PTZ00369 Ras-like protein; Provisional

Probab=99.97  E-value=3.9e-30  Score=182.44  Aligned_cols=158  Identities=17%  Similarity=0.233  Sum_probs=123.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee-E--EEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE-E--LSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      +..+||+++|++|||||||++++.+..+.. ..||.+.... .  +....+.+.+|||||++.+..++..+++.+|++++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            456899999999999999999999988764 4455544332 2  23334678899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      |+|++++++++.+..|+..+.+.....+.|+++++||+|+...  ...++...... .                ...+++
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~-~----------------~~~~~~  145 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAK-S----------------FGIPFL  145 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-H----------------hCCEEE
Confidence            9999999999999998888876555568999999999998632  22222221111 1                124689


Q ss_pred             EeeeecCCChhhHHHhhhhhc
Q 029437          172 MCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       172 ~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++||++|.|++++|++|.+.+
T Consensus       146 e~Sak~~~gi~~~~~~l~~~l  166 (189)
T PTZ00369        146 ETSAKQRVNVDEAFYELVREI  166 (189)
T ss_pred             EeeCCCCCCHHHHHHHHHHHH
Confidence            999999999999999998654

>cd04127 Rab27A Rab27a subfamily

Probab=99.97  E-value=9.6e-30  Score=179.10  Aligned_cols=156  Identities=19%  Similarity=0.243  Sum_probs=121.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEe------------CCEEEEEEEcCChhhhHhhHHh
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSI------------GKIKFKAFDLGGHQIARRVWKD   83 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~------------~~~~~~~~D~~G~~~~~~~~~~   83 (193)
                      +.+||+++|++|||||||++++....+.. ..+|.+...  ..+.+            ....+.+||+||++.+......
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            45899999999999999999999888765 345554332  22322            2378999999999999999999


Q ss_pred             hcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccC
Q 029437           84 YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLA  161 (193)
Q Consensus        84 ~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  161 (193)
                      +++++|++++|+|+++++++..+..|+..+......++.|+++|+||+|+...  ...++.. ++....           
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~-~~~~~~-----------  150 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAK-ALADKY-----------  150 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHH-HHHHHc-----------
Confidence            99999999999999999999999998888765444568899999999999632  2333321 111111           


Q ss_pred             CCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          162 DSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       162 ~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                           .++++++||++|.|++++|++|.+.
T Consensus       151 -----~~~~~e~Sak~~~~v~~l~~~l~~~  175 (180)
T cd04127         151 -----GIPYFETSAATGTNVEKAVERLLDL  175 (180)
T ss_pred             -----CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence                 2468999999999999999999864

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.97  E-value=4e-30  Score=178.84  Aligned_cols=153  Identities=20%  Similarity=0.327  Sum_probs=119.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEe----CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELSI----GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      +||+++|++|||||||++++....+.. ..+|.+.......+    ....+.+|||+|++.+..+...++..+|++++|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            589999999999999999999877654 45666655444332    3478999999999998888888889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI  175 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  175 (193)
                      |++++++++.+..|+..+....  .++|+++++||+|+.......+......  .               ....++++||
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~--~---------------~~~~~~e~Sa  141 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQITFHR--K---------------KNLQYYEISA  141 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHHHHH--H---------------cCCEEEEEeC
Confidence            9999999999988888875543  3899999999999973222111111111  1               2367999999


Q ss_pred             ecCCChhhHHHhhhhhc
Q 029437          176 VRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       176 ~~g~gv~el~~~i~~~~  192 (193)
                      ++|.|++++|++|.+.+
T Consensus       142 ~~~~~v~~~f~~l~~~~  158 (166)
T cd00877         142 KSNYNFEKPFLWLARKL  158 (166)
T ss_pred             CCCCChHHHHHHHHHHH
Confidence            99999999999998754

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.97  E-value=4.5e-30  Score=177.55  Aligned_cols=157  Identities=17%  Similarity=0.257  Sum_probs=121.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      ++||+++|++|||||||++++.++.+.. ..||.+.. ...+..++  ..+.+|||+|++.+..++..+++.+|++++|+
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            3689999999999999999999888754 33454432 22233333  56889999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEee
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS  174 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  174 (193)
                      |++++.+++.+..|+..+.......+.|+++++||+|+... ....+.......                 ...+++++|
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~~~S  143 (162)
T cd04138          81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKS-----------------YGIPYIETS  143 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHH-----------------hCCeEEEec
Confidence            99999999999888888876555568999999999999742 222222222110                 124689999


Q ss_pred             eecCCChhhHHHhhhhhcC
Q 029437          175 IVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       175 a~~g~gv~el~~~i~~~~~  193 (193)
                      |++|.|++++|++|.+.++
T Consensus       144 a~~~~gi~~l~~~l~~~~~  162 (162)
T cd04138         144 AKTRQGVEEAFYTLVREIR  162 (162)
T ss_pred             CCCCCCHHHHHHHHHHHhC
Confidence            9999999999999988763

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04136 Rap_like Rap-like subfamily

Probab=99.97  E-value=3.5e-30  Score=178.41  Aligned_cols=156  Identities=21%  Similarity=0.261  Sum_probs=121.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc-ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP-TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      ++||+++|++|||||||++++....+.. ..||... ....+..++  ..+.+|||||++++..++..+++.+|++++|+
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            3699999999999999999999888765 3345432 223344444  67889999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      |++++++++.+..|+..+.......+.|+++++||+|+...  ...++. ..+....                ..+++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~~----------------~~~~~~~  143 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEG-QALARQW----------------GCPFYET  143 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHH-HHHHHHc----------------CCeEEEe
Confidence            99999999999998888876555568999999999998632  222221 1111111                1578999


Q ss_pred             eeecCCChhhHHHhhhhhc
Q 029437          174 SIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~~  192 (193)
                      ||++|.|++++|++|.+.+
T Consensus       144 Sa~~~~~v~~l~~~l~~~~  162 (163)
T cd04136         144 SAKSKINVDEVFADLVRQI  162 (163)
T ss_pred             cCCCCCCHHHHHHHHHHhc
Confidence            9999999999999998764

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=5.2e-30  Score=185.46  Aligned_cols=155  Identities=19%  Similarity=0.323  Sum_probs=124.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEe----CCEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELSI----GKIKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      +..+||+++|++|||||||++++..+.+.. ..+|.+.......+    ..+.+.+|||+|++.+..++..+++.+|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            677999999999999999999999888765 56777665444332    3479999999999999999889999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      +|+|++++++++.+..|+..+...  ..+.|+++|+||+|+... ...+++  .+..                ...+.++
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~--~~~~----------------~~~~~~~  150 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV--TFHR----------------KKNLQYY  150 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhccCCHHHH--HHHH----------------hcCCEEE
Confidence            999999999999999888887543  358999999999999632 222222  1110                0235789


Q ss_pred             EeeeecCCChhhHHHhhhhhc
Q 029437          172 MCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       172 ~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +|||++|.|++++|+||.+.+
T Consensus       151 e~SAk~~~~i~~~f~~l~~~~  171 (219)
T PLN03071        151 EISAKSNYNFEKPFLYLARKL  171 (219)
T ss_pred             EcCCCCCCCHHHHHHHHHHHH
Confidence            999999999999999998764

>cd04122 Rab14 Rab14 subfamily

Probab=99.97  E-value=1.3e-29  Score=176.25  Aligned_cols=155  Identities=21%  Similarity=0.271  Sum_probs=121.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCCcce--eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQYPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL   94 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v   94 (193)
                      .+||+++|++|+|||||++++..+.+.... +|.+...  ..+..+  .+.+.+||+||++.+......+++++|++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            379999999999999999999999876643 3554433  223343  46789999999999999989999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      +|++++++++.+..|+..+... ..++.|+++++||+|+...  ...++..+....                 ...++++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~e  143 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFADE-----------------NGLLFLE  143 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHHHH-----------------cCCEEEE
Confidence            9999999999999998877543 3367999999999999743  233333322211                 1257899


Q ss_pred             eeeecCCChhhHHHhhhhhc
Q 029437          173 CSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~~  192 (193)
                      |||++|.|++++|.++.+.+
T Consensus       144 ~Sa~~~~~i~e~f~~l~~~~  163 (166)
T cd04122         144 CSAKTGENVEDAFLETAKKI  163 (166)
T ss_pred             EECCCCCCHHHHHHHHHHHH
Confidence            99999999999999998654

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.97  E-value=6.5e-30  Score=179.13  Aligned_cols=165  Identities=21%  Similarity=0.293  Sum_probs=119.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccee-EEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQYPTSE-ELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD   96 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d   96 (193)
                      +||+++|++|+|||||++++..+.|. .+.||.+.... .+..++  +.+.+|||+|++.+..++..+++++|++++|+|
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d   81 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS   81 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence            68999999999999999999999885 45577654332 344444  788999999999999888889999999999999


Q ss_pred             CCChhhHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCcc--ccCCCccccCCCCCcceEEEEe
Q 029437           97 AYDKERFAESKK-ELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNF--TTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      ++++++++.+.. |...+.. . .++.|+++++||+|+.....   ..+.+.....  ........+++ ..+.+.+++|
T Consensus        82 ~~~~~s~~~~~~~w~~~i~~-~-~~~~piilvgnK~Dl~~~~~---~~~~l~~~~~~~v~~~~~~~~a~-~~~~~~~~e~  155 (175)
T cd01874          82 VVSPSSFENVKEKWVPEITH-H-CPKTPFLLVGTQIDLRDDPS---TIEKLAKNKQKPITPETGEKLAR-DLKAVKYVEC  155 (175)
T ss_pred             CCCHHHHHHHHHHHHHHHHH-h-CCCCCEEEEEECHhhhhChh---hHHHhhhccCCCcCHHHHHHHHH-HhCCcEEEEe
Confidence            999999999975 5444432 2 35799999999999864321   1112211110  00000000110 1123689999


Q ss_pred             eeecCCChhhHHHhhhhh
Q 029437          174 SIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~  191 (193)
                      ||++|.|++++|+.+.+.
T Consensus       156 SA~tg~~v~~~f~~~~~~  173 (175)
T cd01874         156 SALTQKGLKNVFDEAILA  173 (175)
T ss_pred             cCCCCCCHHHHHHHHHHH
Confidence            999999999999998764

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.97  E-value=1.3e-29  Score=176.29  Aligned_cols=155  Identities=25%  Similarity=0.384  Sum_probs=120.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      +||+++|++|||||||++++.+.++.. ..+|.+...  ..+..  ....+++|||||++.+..++..+++.+|++++|+
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999988765 345555432  23333  3578999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCC----CCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           96 DAYDKERFAESKKELDALLSDEA----LANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~----~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      |++++++++.+..|+..+.....    ..+.|+++++||+|+..  ....++...... .                ...+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~  143 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE-S----------------KGFK  143 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHH-H----------------cCCe
Confidence            99999999999888888865433    25799999999999963  223333222111 1                1246


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++++||++|.|++++|++|.+.+
T Consensus       144 ~~~~Sa~~~~gi~~l~~~l~~~l  166 (168)
T cd04119         144 YFETSACTGEGVNEMFQTLFSSI  166 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            89999999999999999998754

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04176 Rap2 Rap2 subgroup

Probab=99.97  E-value=4.6e-30  Score=177.95  Aligned_cols=156  Identities=18%  Similarity=0.259  Sum_probs=121.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCC-cceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQY-PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~-~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      +++|+++|++|+|||||++++..+++... .+|.. .....+..++  ..+.+|||||++++..++..+++++|++++|+
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            47999999999999999999999887653 34433 2233344443  56889999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      |++++++++++..|+..+.......++|+++++||+|+....  ...+ ...+...                ...++++|
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~-~~~~~~~----------------~~~~~~~~  143 (163)
T cd04176          81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAE-GRALAEE----------------WGCPFMET  143 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHH-HHHHHHH----------------hCCEEEEe
Confidence            999999999999988888765555689999999999986321  2211 1111110                12468999


Q ss_pred             eeecCCChhhHHHhhhhhc
Q 029437          174 SIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~~  192 (193)
                      ||++|.|++++|++|.+.+
T Consensus       144 Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd04176         144 SAKSKTMVNELFAEIVRQM  162 (163)
T ss_pred             cCCCCCCHHHHHHHHHHhc
Confidence            9999999999999998875

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04133 Rop_like Rop subfamily

Probab=99.97  E-value=4.2e-30  Score=179.75  Aligned_cols=153  Identities=18%  Similarity=0.239  Sum_probs=118.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee-EEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE-ELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD   96 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d   96 (193)
                      +||+++|++|+|||||+.++..+.|.. ..||.+.... .+..  ..+.+.+|||+|+++++.+...+++++|++|+|+|
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd   81 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   81 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence            589999999999999999999999875 5677754332 2333  34789999999999999999999999999999999


Q ss_pred             CCChhhHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCCCCCC------------CCHHHHHHhhCCCccccCCCccccCCC
Q 029437           97 AYDKERFAES-KKELDALLSDEALANVPFLVLGNKIDIPYA------------ASEEELRYHLGLSNFTTGKGKVNLADS  163 (193)
Q Consensus        97 ~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (193)
                      ++++++|+++ ..|+..+...  .++.|+++|+||+|+.+.            ...++... +....             
T Consensus        82 ~~~~~Sf~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~-~a~~~-------------  145 (176)
T cd04133          82 LISRASYENVLKKWVPELRHY--APNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEE-LRKQI-------------  145 (176)
T ss_pred             cCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHH-HHHHc-------------
Confidence            9999999998 5677766433  258999999999999642            11111111 10000             


Q ss_pred             CCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          164 NVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                        +...+++|||++|.||+++|+.+.+.
T Consensus       146 --~~~~~~E~SAk~~~nV~~~F~~~~~~  171 (176)
T cd04133         146 --GAAAYIECSSKTQQNVKAVFDAAIKV  171 (176)
T ss_pred             --CCCEEEECCCCcccCHHHHHHHHHHH
Confidence              22368999999999999999999875

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.97  E-value=1.2e-29  Score=175.95  Aligned_cols=157  Identities=18%  Similarity=0.254  Sum_probs=121.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      .+||+++|++|+|||||++++.+..+.. ..++.... .......  ...+.+|||||++.+..++..+++.+|++++|+
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   81 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF   81 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence            4799999999999999999999887654 33444322 2223333  367899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      |++++.+++.+..|+..+.......+.|+++++||+|+....  ..++...... .                ...+++++
T Consensus        82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~~~~~  144 (164)
T cd04145          82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELAR-K----------------LKIPYIET  144 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHH-H----------------cCCcEEEe
Confidence            999999999999998888765555689999999999996432  2222221111 0                12468999


Q ss_pred             eeecCCChhhHHHhhhhhcC
Q 029437          174 SIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~~~  193 (193)
                      ||++|.|++++|++|.+.++
T Consensus       145 Sa~~~~~i~~l~~~l~~~~~  164 (164)
T cd04145         145 SAKDRLNVDKAFHDLVRVIR  164 (164)
T ss_pred             eCCCCCCHHHHHHHHHHhhC
Confidence            99999999999999988764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.97  E-value=7.4e-30  Score=179.49  Aligned_cols=169  Identities=22%  Similarity=0.284  Sum_probs=119.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      ...+||+++|++|+|||||++++..+.|.. ..||.+... ..+..  ..+.+.+|||+|++.+..+...+++++|++++
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il   82 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI   82 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence            456899999999999999999999998865 456665432 22333  34789999999999999999999999999999


Q ss_pred             EEECCChhhHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH-HHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437           94 LVDAYDKERFAES-KKELDALLSDEALANVPFLVLGNKIDIPYAASE-EELRYHLGLSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      |+|++++++|+++ ..|+..+...  .++.|+++|+||+|+...... .++...... ... ......+++. .+...++
T Consensus        83 vyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~~~~~~~~-~v~-~~~~~~~a~~-~~~~~~~  157 (182)
T cd04172          83 CFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDLTTLVELSNHRQT-PVS-YDQGANMAKQ-IGAATYI  157 (182)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEeEChhhhcChhhHHHHHhcCCC-CCC-HHHHHHHHHH-cCCCEEE
Confidence            9999999999997 5666666432  368999999999998532110 000000000 000 0000011111 0224789


Q ss_pred             EeeeecCCC-hhhHHHhhhhh
Q 029437          172 MCSIVRKMG-YGDGFKWLSQY  191 (193)
Q Consensus       172 ~~Sa~~g~g-v~el~~~i~~~  191 (193)
                      +|||++|.| |+++|+.+.+.
T Consensus       158 E~SAk~~~n~v~~~F~~~~~~  178 (182)
T cd04172         158 ECSALQSENSVRDIFHVATLA  178 (182)
T ss_pred             ECCcCCCCCCHHHHHHHHHHH
Confidence            999999998 99999998764

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.8e-29  Score=162.81  Aligned_cols=165  Identities=33%  Similarity=0.578  Sum_probs=152.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD   96 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d   96 (193)
                      ..++++|+.+|-.++||||++..+.........||++.+.+.+.+.++++++||.+|+++.+.++.++++...++|+|+|
T Consensus        14 ~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~D   93 (180)
T KOG0071|consen   14 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD   93 (180)
T ss_pred             CcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEe
Confidence            45689999999999999999999999988889999999999999999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeee
Q 029437           97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIV  176 (193)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  176 (193)
                      +.+.+.+++.+..+..++++..+.+.|+++.+||.|++.+..+.|+.+.+++..++            .+.+-+.+|||.
T Consensus        94 sa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r------------~~~W~vqp~~a~  161 (180)
T KOG0071|consen   94 SADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIR------------DRNWYVQPSCAL  161 (180)
T ss_pred             ccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcccccc------------CCccEeeccccc
Confidence            99999999999999999999999999999999999999999999999999987721            134567899999


Q ss_pred             cCCChhhHHHhhhhhcC
Q 029437          177 RKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       177 ~g~gv~el~~~i~~~~~  193 (193)
                      +|.|+.|.+.||..-++
T Consensus       162 ~gdgL~eglswlsnn~~  178 (180)
T KOG0071|consen  162 SGDGLKEGLSWLSNNLK  178 (180)
T ss_pred             cchhHHHHHHHHHhhcc
Confidence            99999999999987653

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.97  E-value=9.3e-29  Score=170.12  Aligned_cols=156  Identities=34%  Similarity=0.577  Sum_probs=129.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh
Q 029437           23 ILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE  101 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~  101 (193)
                      |+++|++|||||||++++.+.++.. ..||.+.....+..+...+.+||+||+..++..+..++..+|++++|+|++++.
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~   81 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT   81 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence            7899999999999999999988765 556777777777778899999999999999999999999999999999999998


Q ss_pred             hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCCh
Q 029437          102 RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGY  181 (193)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv  181 (193)
                      ++.....++..+.......++|+++++||+|+.......+....+.....            ......++++|+++|.|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~~~gi  149 (159)
T cd04159          82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSI------------TDREVSCYSISCKEKTNI  149 (159)
T ss_pred             HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccc------------cCCceEEEEEEeccCCCh
Confidence            88888888888876655578999999999999765555555555443321            113467899999999999


Q ss_pred             hhHHHhhhh
Q 029437          182 GDGFKWLSQ  190 (193)
Q Consensus       182 ~el~~~i~~  190 (193)
                      ++++++|.+
T Consensus       150 ~~l~~~l~~  158 (159)
T cd04159         150 DIVLDWLIK  158 (159)
T ss_pred             HHHHHHHhh
Confidence            999999965

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.97  E-value=1.3e-29  Score=175.86  Aligned_cols=155  Identities=21%  Similarity=0.276  Sum_probs=119.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCc-ceeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYP-TSEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD   96 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~-~~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d   96 (193)
                      +||+++|++|||||||++++.+..+... .+|... .......+  ...+.+|||||++++..++..+++.+|++++|+|
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence            4899999999999999999998887653 333332 22233333  4688999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEee
Q 029437           97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS  174 (193)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  174 (193)
                      +++++++..+..|+..+.......+.|+++++||+|+....  ..++...... ..                ..++++||
T Consensus        81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~-~~----------------~~~~~~~S  143 (164)
T smart00173       81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELAR-QW----------------GCPFLETS  143 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHH-Hc----------------CCEEEEee
Confidence            99999999998888887665555689999999999997422  2222211111 11                15789999


Q ss_pred             eecCCChhhHHHhhhhhc
Q 029437          175 IVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       175 a~~g~gv~el~~~i~~~~  192 (193)
                      |++|.|++++|++|.+.+
T Consensus       144 a~~~~~i~~l~~~l~~~~  161 (164)
T smart00173      144 AKERVNVDEAFYDLVREI  161 (164)
T ss_pred             cCCCCCHHHHHHHHHHHH
Confidence            999999999999998765

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.97  E-value=3e-29  Score=174.57  Aligned_cols=156  Identities=20%  Similarity=0.269  Sum_probs=122.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce--eEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      ..+||+++|++|+|||||++++.+.+|... .+|.+...  ..+.+.+  +.+.+||+||++.+......+++++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            458999999999999999999999887653 45555432  3344443  678999999999999888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      |+|++++++++.+..|+..+... ...+.|+++++||+|+...  ...++.......                 ...+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~  143 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALADE-----------------YGIKFL  143 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHHH-----------------cCCEEE
Confidence            99999999999999988877543 3368999999999999732  233332222211                 124689


Q ss_pred             EeeeecCCChhhHHHhhhhhc
Q 029437          172 MCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       172 ~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++||++|.|++++|++|.+++
T Consensus       144 ~~Sa~~~~~v~~~~~~i~~~~  164 (167)
T cd01867         144 ETSAKANINVEEAFFTLAKDI  164 (167)
T ss_pred             EEeCCCCCCHHHHHHHHHHHH
Confidence            999999999999999998865

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04117 Rab15 Rab15 subfamily

Probab=99.97  E-value=4.1e-29  Score=172.90  Aligned_cols=153  Identities=19%  Similarity=0.311  Sum_probs=120.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      ++|+++|++|+|||||++++..+++.+ ..+|.+...  ..+...+  ..+.+||++|++.+......++..+|++++|+
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            489999999999999999999998865 356666533  3444444  67899999999999998888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      |++++++++.+..|+..+... ...+.|+++++||.|+....  ..++.. .+...                ...++++|
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~-~~~~~----------------~~~~~~e~  142 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGN-KLAKE----------------YGMDFFET  142 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHH-HHHHH----------------cCCEEEEE
Confidence            999999999999988877543 33579999999999986332  222211 11111                11468999


Q ss_pred             eeecCCChhhHHHhhhhh
Q 029437          174 SIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~  191 (193)
                      ||++|.|++++|++|.+.
T Consensus       143 Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117         143 SACTNSNIKESFTRLTEL  160 (161)
T ss_pred             eCCCCCCHHHHHHHHHhh
Confidence            999999999999999865

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.97  E-value=1.2e-29  Score=177.66  Aligned_cols=169  Identities=17%  Similarity=0.259  Sum_probs=118.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      ++||+++|++|||||||+.++..+.|.. ..||..... ..+..+  ...+.+|||+|++.+..++..++.++|++|+|+
T Consensus         1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            3689999999999999999999988764 456654322 223333  378899999999999998888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC-CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEee
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA-SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS  174 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  174 (193)
                      |++++++++.+...|...+... .++.|+++++||+|+.... ..+.+..... ... .......++.. .+.+.+++||
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~-~~v-~~~~~~~~~~~-~~~~~~~e~S  156 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKL-TPI-TYPQGLAMAKE-IGAVKYLECS  156 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEeeChhhccChhhHHHHhhccC-CCC-CHHHHHHHHHH-cCCcEEEEec
Confidence            9999999999975444333332 3589999999999996321 1222211100 000 00000001111 1235789999


Q ss_pred             eecCCChhhHHHhhhhhc
Q 029437          175 IVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       175 a~~g~gv~el~~~i~~~~  192 (193)
                      |++|.|++++|+.+.+.+
T Consensus       157 a~~~~~i~~~f~~l~~~~  174 (174)
T cd01871         157 ALTQKGLKTVFDEAIRAV  174 (174)
T ss_pred             ccccCCHHHHHHHHHHhC
Confidence            999999999999998653

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd01864 Rab19 Rab19 subfamily

Probab=99.97  E-value=5.4e-29  Score=172.98  Aligned_cols=157  Identities=22%  Similarity=0.284  Sum_probs=121.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      +.+||+++|++|+|||||++++....+... .++.+.  ....+.+++  ..+.+||+||++.+.......++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            458999999999999999999998877653 344432  334455555  688999999999999888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      |+|++++.+++.+..|+..+... ...++|+++|+||+|+...  ...++...... ..               ....++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~---------------~~~~~~  144 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAE-KN---------------GMLAVL  144 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHH-Hc---------------CCcEEE
Confidence            99999999999998888887543 3468999999999999732  22222222111 11               224689


Q ss_pred             EeeeecCCChhhHHHhhhhhc
Q 029437          172 MCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       172 ~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++||++|.|++++|++|.+.+
T Consensus       145 e~Sa~~~~~v~~~~~~l~~~l  165 (165)
T cd01864         145 ETSAKESQNVEEAFLLMATEL  165 (165)
T ss_pred             EEECCCCCCHHHHHHHHHHhC
Confidence            999999999999999998764

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2e-29  Score=174.14  Aligned_cols=156  Identities=22%  Similarity=0.342  Sum_probs=127.3

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCC-CCCc--ceeEEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCE
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQP-TQYP--TSEELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDA   90 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-t~~~--~~~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~   90 (193)
                      .+...++|+++|++|||||+++.++....|..... |+++  ....+..  ..+.+++|||+|+++++.+...+++++++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            46778999999999999999999999999876443 4443  3444444  45789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHH---HHHhhCCCccccCCCccccCCCCC
Q 029437           91 VVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEE---LRYHLGLSNFTTGKGKVNLADSNV  165 (193)
Q Consensus        91 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  165 (193)
                      +++|+|+++..+|+++..|+..+ ++....++|.++|+||+|+..  .++.++   +...++                  
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I-~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G------------------  148 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNI-DEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYG------------------  148 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHH-HhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhC------------------
Confidence            99999999999999999976666 445556999999999999973  333332   444443                  


Q ss_pred             cceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          166 RPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       166 ~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                        +.++++||++|.||+|.|-.|.+.+
T Consensus       149 --~~F~EtSAk~~~NI~eaF~~La~~i  173 (207)
T KOG0078|consen  149 --IKFFETSAKTNFNIEEAFLSLARDI  173 (207)
T ss_pred             --CeEEEccccCCCCHHHHHHHHHHHH
Confidence              4669999999999999998887654

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.97  E-value=1.1e-29  Score=165.05  Aligned_cols=173  Identities=35%  Similarity=0.610  Sum_probs=156.1

Q ss_pred             HHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHH
Q 029437            4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWK   82 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~   82 (193)
                      +.|+.+.+     .+.++.+.++|-.+||||||.+.+..+.+.+ ..||++.+...+.-++..+.+||.||+++++.++.
T Consensus         9 L~wi~~~f-----~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWe   83 (186)
T KOG0075|consen    9 LVWICNSF-----WKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWE   83 (186)
T ss_pred             HHHHHHHH-----HHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHH
Confidence            45555555     6777899999999999999999999888776 56899999999999999999999999999999999


Q ss_pred             hhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCC
Q 029437           83 DYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLAD  162 (193)
Q Consensus        83 ~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (193)
                      .+.+.+++++||+|+++++..+..++.+..++......++|+++++||.|++++.+..++-+.+++..+         . 
T Consensus        84 rycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~si---------t-  153 (186)
T KOG0075|consen   84 RYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSI---------T-  153 (186)
T ss_pred             HHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCcccc---------c-
Confidence            999999999999999999999999999999999999999999999999999999999999999987772         2 


Q ss_pred             CCCcceEEEEeeeecCCChhhHHHhhhhhcC
Q 029437          163 SNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       163 ~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~~  193 (193)
                        .+.+-.+.+|+++..|++.+.+||.++.+
T Consensus       154 --dREvcC~siScke~~Nid~~~~Wli~hsk  182 (186)
T KOG0075|consen  154 --DREVCCFSISCKEKVNIDITLDWLIEHSK  182 (186)
T ss_pred             --cceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence              25577899999999999999999998753

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.97  E-value=6.4e-29  Score=172.15  Aligned_cols=155  Identities=21%  Similarity=0.335  Sum_probs=122.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL   94 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v   94 (193)
                      ++||+++|++|||||||++++.+.++.. ..++.+..  ...+.++  .+.+.+||+||++++......+++.+|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            4799999999999999999999998776 55665532  2333443  47899999999999988888889999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      +|+++++++.....|+..+..... ++.|+++++||+|+..  ....++...... ..                ...+++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-~~----------------~~~~~~  142 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYAD-EN----------------GLLFFE  142 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHH-Hc----------------CCEEEE
Confidence            999999999999988888865543 6899999999999873  223333222211 11                156899


Q ss_pred             eeeecCCChhhHHHhhhhhc
Q 029437          173 CSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +||++|.|+++++++|.+.+
T Consensus       143 ~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860         143 TSAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             EECCCCCCHHHHHHHHHHHh
Confidence            99999999999999998875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.97  E-value=4e-29  Score=172.26  Aligned_cols=151  Identities=19%  Similarity=0.230  Sum_probs=114.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCCcceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQYPTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA   97 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~t~~~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~   97 (193)
                      +||+++|++|+|||||+.++..+.|.+.. |+.+.....+..++  ..+.+||++|++..     .+++.+|++++|+|+
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~   75 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVFSL   75 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEEEC
Confidence            48999999999999999999988877643 33333334555555  67999999999752     345789999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC----CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           98 YDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY----AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      +++++|+++..|+..+......++.|+++++||.|+..    ....++. +++....               ..+.+++|
T Consensus        76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~-~~~~~~~---------------~~~~~~e~  139 (158)
T cd04103          76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARA-RQLCADM---------------KRCSYYET  139 (158)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHH-HHHHHHh---------------CCCcEEEE
Confidence            99999999999988887655556899999999999842    1222211 1111011               23678999


Q ss_pred             eeecCCChhhHHHhhhhhc
Q 029437          174 SIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~~  192 (193)
                      ||++|.||+++|+.+.+.+
T Consensus       140 SAk~~~~i~~~f~~~~~~~  158 (158)
T cd04103         140 CATYGLNVERVFQEAAQKI  158 (158)
T ss_pred             ecCCCCCHHHHHHHHHhhC
Confidence            9999999999999998653

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd01865 Rab3 Rab3 subfamily

Probab=99.97  E-value=9.8e-29  Score=171.68  Aligned_cols=154  Identities=21%  Similarity=0.293  Sum_probs=119.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      +||+++|++|||||||++++.+.++.. ..+|.+...  ..+...  ...+.+||++|++.+..++..+++.+|++++|+
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            689999999999999999999998865 345555322  233332  368999999999999999899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      |++++++++.+..|+..+.. ....+.|+++++||+|+....  ..++..+... .                ....++++
T Consensus        82 d~~~~~s~~~~~~~~~~i~~-~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~~~~~  143 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKT-YSWDNAQVILVGNKCDMEDERVVSSERGRQLAD-Q----------------LGFEFFEA  143 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHH-hCCCCCCEEEEEECcccCcccccCHHHHHHHHH-H----------------cCCEEEEE
Confidence            99999999999988887743 333578999999999996432  2222221111 0                11368999


Q ss_pred             eeecCCChhhHHHhhhhhc
Q 029437          174 SIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~~  192 (193)
                      ||++|.|++++|++|.+.+
T Consensus       144 Sa~~~~gv~~l~~~l~~~~  162 (165)
T cd01865         144 SAKENINVKQVFERLVDII  162 (165)
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            9999999999999998754

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04116 Rab9 Rab9 subfamily

Probab=99.97  E-value=6.3e-29  Score=173.41  Aligned_cols=159  Identities=20%  Similarity=0.271  Sum_probs=122.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      ...+||+++|++|+|||||++++.+..+.. ..++.+...  ..+..  ....+.+||+||++++..++..+++.+|+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            345899999999999999999999888765 334554432  23333  3467899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCC---CCCCcEEEEEeCCCCCC-CCCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEA---LANVPFLVLGNKIDIPY-AASEEELRYHLGLSNFTTGKGKVNLADSNVRPL  168 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~pviiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (193)
                      +|+|++++++++.+..|...+.....   ..+.|+++++||+|+.. ....++..+... ..               ...
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~---------------~~~  146 (170)
T cd04116          83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCR-EN---------------GDY  146 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHH-HC---------------CCC
Confidence            99999999999999888887765322   35789999999999963 334444333221 11               224


Q ss_pred             EEEEeeeecCCChhhHHHhhhhhc
Q 029437          169 EVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       169 ~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .++++||++|.|++++|+++.+.+
T Consensus       147 ~~~e~Sa~~~~~v~~~~~~~~~~~  170 (170)
T cd04116         147 PYFETSAKDATNVAAAFEEAVRRV  170 (170)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            689999999999999999998754

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04110 Rab35 Rab35 subfamily

Probab=99.97  E-value=8e-29  Score=177.05  Aligned_cols=156  Identities=21%  Similarity=0.329  Sum_probs=122.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      ...++|+++|++|+|||||++++.+.++.. ..+|.+...  ..+..+  ...+.+||+||++.+..++..++..+++++
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            456899999999999999999999988764 456665432  333333  367899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      +|+|++++++++.+..|+..+...  ....|+++++||+|+....  ..++...... .                ....+
T Consensus        84 lv~D~~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~~  144 (199)
T cd04110          84 VVYDVTNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYKFAG-Q----------------MGISL  144 (199)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHHHHH-H----------------cCCEE
Confidence            999999999999999888877543  3578999999999997432  2222222111 1                12568


Q ss_pred             EEeeeecCCChhhHHHhhhhhc
Q 029437          171 FMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       171 ~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++||++|.|++++|++|.+.+
T Consensus       145 ~e~Sa~~~~gi~~lf~~l~~~~  166 (199)
T cd04110         145 FETSAKENINVEEMFNCITELV  166 (199)
T ss_pred             EEEECCCCcCHHHHHHHHHHHH
Confidence            9999999999999999998753

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.97  E-value=1.4e-28  Score=171.07  Aligned_cols=155  Identities=22%  Similarity=0.291  Sum_probs=120.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL   94 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v   94 (193)
                      .+||+++|++|||||||++++.+..+.. ..+|.+..  ...+...  ...+.+||+||++.+..+...+++.+|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            3799999999999999999999888764 33454432  2334443  36789999999999999888999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      +|+++++++.++..|+..+... ...+.|+++++||+|+...  ...++...... .                ..+++++
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~~~~  143 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTDKRVVDYSEAQEFAD-E----------------LGIPFLE  143 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEEChhcccccCCCHHHHHHHHH-H----------------cCCeEEE
Confidence            9999999999999988877443 3357999999999998633  22233222111 1                1247899


Q ss_pred             eeeecCCChhhHHHhhhhhc
Q 029437          173 CSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +||++|.|++++|++|.+.+
T Consensus       144 ~Sa~~~~~v~~~~~~i~~~~  163 (166)
T cd01869         144 TSAKNATNVEQAFMTMAREI  163 (166)
T ss_pred             EECCCCcCHHHHHHHHHHHH
Confidence            99999999999999998765

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.97  E-value=5.4e-29  Score=180.44  Aligned_cols=169  Identities=20%  Similarity=0.238  Sum_probs=117.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      ...+||+++|++|+|||||++++....|.. +.||.+... ..+..  ..+.+.+|||+|++.+..+...+++++|++++
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl   90 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL   90 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence            356899999999999999999999988875 456665432 22333  34789999999999999999999999999999


Q ss_pred             EEECCChhhHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH-HHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437           94 LVDAYDKERFAES-KKELDALLSDEALANVPFLVLGNKIDIPYAASE-EELRYHLGLSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      |+|++++++|+.+ ..|+..+...  .++.|+++|+||+|+...... .++..... .... ......+++.. ....++
T Consensus        91 VyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~l~~~~~-~~Vs-~~e~~~~a~~~-~~~~~~  165 (232)
T cd04174          91 CFDISRPETVDSALKKWKAEIMDY--CPSTRILLIGCKTDLRTDLSTLMELSNQKQ-APIS-YEQGCALAKQL-GAEVYL  165 (232)
T ss_pred             EEECCChHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccchhhhhccccC-CcCC-HHHHHHHHHHc-CCCEEE
Confidence            9999999999985 5666666432  257899999999998532110 00000000 0000 00000111110 222689


Q ss_pred             EeeeecCC-ChhhHHHhhhhh
Q 029437          172 MCSIVRKM-GYGDGFKWLSQY  191 (193)
Q Consensus       172 ~~Sa~~g~-gv~el~~~i~~~  191 (193)
                      +|||++|. ||+++|+.+.+.
T Consensus       166 EtSAktg~~~V~e~F~~~~~~  186 (232)
T cd04174         166 ECSAFTSEKSIHSIFRSASLL  186 (232)
T ss_pred             EccCCcCCcCHHHHHHHHHHH
Confidence            99999998 899999998764

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04131 Rnd Rnd subfamily

Probab=99.97  E-value=2.4e-29  Score=176.52  Aligned_cols=166  Identities=22%  Similarity=0.239  Sum_probs=116.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD   96 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d   96 (193)
                      +||+++|++|+|||||++++.+..|.. +.||.+... ..+..  ..+.+.+|||+|++.+..+.+.+++++|++++|+|
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfd   81 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFD   81 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEE
Confidence            689999999999999999999998865 446654332 22333  34789999999999999988899999999999999


Q ss_pred             CCChhhHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC-HHHHHHhhCCCccccCCCccccCCCCCcceEEEEee
Q 029437           97 AYDKERFAES-KKELDALLSDEALANVPFLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS  174 (193)
Q Consensus        97 ~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  174 (193)
                      ++++++|+++ ..|+..+...  .++.|+++|+||+|+..... ..++..... ..... .....+++. .....+++||
T Consensus        82 it~~~Sf~~~~~~w~~~i~~~--~~~~~iilVgnK~DL~~~~~~~~~~~~~~~-~~v~~-~e~~~~a~~-~~~~~~~E~S  156 (178)
T cd04131          82 ISRPETLDSVLKKWRGEIQEF--CPNTKVLLVGCKTDLRTDLSTLMELSHQRQ-APVSY-EQGCAIAKQ-LGAEIYLECS  156 (178)
T ss_pred             CCChhhHHHHHHHHHHHHHHH--CCCCCEEEEEEChhhhcChhHHHHHHhcCC-CCCCH-HHHHHHHHH-hCCCEEEECc
Confidence            9999999996 5666666432  35899999999999953211 000100000 00000 000011111 0223789999


Q ss_pred             eecCCC-hhhHHHhhhhh
Q 029437          175 IVRKMG-YGDGFKWLSQY  191 (193)
Q Consensus       175 a~~g~g-v~el~~~i~~~  191 (193)
                      |++|+| |+++|+.+.+.
T Consensus       157 A~~~~~~v~~~F~~~~~~  174 (178)
T cd04131         157 AFTSEKSVRDIFHVATMA  174 (178)
T ss_pred             cCcCCcCHHHHHHHHHHH
Confidence            999995 99999988763

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.97  E-value=1.3e-29  Score=170.66  Aligned_cols=160  Identities=19%  Similarity=0.302  Sum_probs=128.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeE--EEeCCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEE--LSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      ...-+||.++|++|+|||||++++...+|.+ ...|++..  ...  +...-..+++|||+|+++++++.-.+++++|+.
T Consensus         6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC   85 (210)
T KOG0394|consen    6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC   85 (210)
T ss_pred             cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence            3566899999999999999999999999876 45566643  223  333347899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCC---CCCcEEEEEeCCCCCCCC---CHHHHHHhhCCCccccCCCccccCCCCC
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEAL---ANVPFLVLGNKIDIPYAA---SEEELRYHLGLSNFTTGKGKVNLADSNV  165 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~pviiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (193)
                      ++|+|++++.+|+.+..|..+++.....   ...|.|+++||+|+....   .-.+....+-...               
T Consensus        86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~---------------  150 (210)
T KOG0394|consen   86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSK---------------  150 (210)
T ss_pred             EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhc---------------
Confidence            9999999999999999999999876543   368999999999996421   1222333332222               


Q ss_pred             cceEEEEeeeecCCChhhHHHhhhhh
Q 029437          166 RPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       166 ~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                      +.+++|++|||.+.||.+.|+.+.+.
T Consensus       151 gnipyfEtSAK~~~NV~~AFe~ia~~  176 (210)
T KOG0394|consen  151 GNIPYFETSAKEATNVDEAFEEIARR  176 (210)
T ss_pred             CCceeEEecccccccHHHHHHHHHHH
Confidence            56889999999999999999988764

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.97  E-value=9e-29  Score=172.59  Aligned_cols=154  Identities=18%  Similarity=0.254  Sum_probs=119.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD   96 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d   96 (193)
                      ||+++|++|||||||++++.++.|.. +.||.+...  ..+...  ...+++|||||++++..+...+++++|++++|+|
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999998864 456665443  233333  3679999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH---HHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE---EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      +++++++..+..|+..+.......+.|+++|+||+|+......   ++....+...                ...+++++
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~----------------~~~~~~e~  145 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAE----------------MQAEYWSV  145 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHH----------------cCCeEEEE
Confidence            9999999999998888866544446789999999998643211   1111111111                12468999


Q ss_pred             eeecCCChhhHHHhhhhh
Q 029437          174 SIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~  191 (193)
                      ||++|.|++++|+.|.+.
T Consensus       146 Sa~~g~~v~~lf~~l~~~  163 (170)
T cd04108         146 SALSGENVREFFFRVAAL  163 (170)
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            999999999999998764

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04128 Spg1 Spg1p

Probab=99.97  E-value=8.6e-29  Score=174.36  Aligned_cols=157  Identities=20%  Similarity=0.235  Sum_probs=119.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      +||+++|++|+|||||++++..+.|.. +.||.+...  ..+..++  +.+.+||++|++.+..++..+++++|++++|+
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            589999999999999999999998876 567776544  3444444  78999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH---HHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE---LRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      |++++++++++..|+..+... .....| ++|+||+|+......++   ..++ ...+          ++.  ....+++
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~-~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~-~~~~----------a~~--~~~~~~e  145 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGF-NKTAIP-ILVGTKYDLFADLPPEEQEEITKQ-ARKY----------AKA--MKAPLIF  145 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHh-CCCCCE-EEEEEchhccccccchhhhhhHHH-HHHH----------HHH--cCCEEEE
Confidence            999999999999988887543 223566 68899999964221111   1110 0000          000  1257899


Q ss_pred             eeeecCCChhhHHHhhhhhc
Q 029437          173 CSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~~  192 (193)
                      |||++|.|++++|++|.+.+
T Consensus       146 ~SAk~g~~v~~lf~~l~~~l  165 (182)
T cd04128         146 CSTSHSINVQKIFKIVLAKA  165 (182)
T ss_pred             EeCCCCCCHHHHHHHHHHHH
Confidence            99999999999999998654

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd01868 Rab11_like Rab11-like

Probab=99.97  E-value=2.8e-28  Score=169.28  Aligned_cols=155  Identities=22%  Similarity=0.292  Sum_probs=121.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYL   94 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v   94 (193)
                      .++|+++|++|||||||++++.+.++.. ..|+.+..  ...+..++  ..+.+||+||+..+..+...+++.++++++|
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   82 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   82 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence            3799999999999999999999888764 44565543  33344444  5789999999999999889899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      +|++++.+++.+..|+..+.... ..+.|+++++||.|+...  ...++.......                 ..+.+++
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~  144 (165)
T cd01868          83 YDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEK-----------------NGLSFIE  144 (165)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHHH-----------------cCCEEEE
Confidence            99999999999998888775432 346899999999998632  222332222211                 1257899


Q ss_pred             eeeecCCChhhHHHhhhhhc
Q 029437          173 CSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +||++|.|++++|++|.+.+
T Consensus       145 ~Sa~~~~~v~~l~~~l~~~i  164 (165)
T cd01868         145 TSALDGTNVEEAFKQLLTEI  164 (165)
T ss_pred             EECCCCCCHHHHHHHHHHHh
Confidence            99999999999999998875

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04111 Rab39 Rab39 subfamily

Probab=99.97  E-value=1.1e-28  Score=177.72  Aligned_cols=156  Identities=22%  Similarity=0.336  Sum_probs=122.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce--eEEEe---CCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTS--EELSI---GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~--~~~~~---~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      .+||+++|++|+|||||++++.+..+... .+|.+...  ..+..   ..+.+.+|||+|++.+..+...+++.+|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            47999999999999999999999887653 45555432  22332   24689999999999999988899999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      |+|++++++++++..|+..+.........|+++++||.|+...  ...++. ..+...                ..+.++
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~-~~~~~~----------------~~~~~~  144 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEA-EKLAKD----------------LGMKYI  144 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHH-HHHHHH----------------hCCEEE
Confidence            9999999999999999998876544456789999999999742  222222 111111                125789


Q ss_pred             EeeeecCCChhhHHHhhhhhc
Q 029437          172 MCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       172 ~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +|||++|.|++++|++|.+.+
T Consensus       145 e~Sak~g~~v~e~f~~l~~~~  165 (211)
T cd04111         145 ETSARTGDNVEEAFELLTQEI  165 (211)
T ss_pred             EEeCCCCCCHHHHHHHHHHHH
Confidence            999999999999999998754

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04109 Rab28 Rab28 subfamily

Probab=99.97  E-value=1.5e-28  Score=177.63  Aligned_cols=155  Identities=18%  Similarity=0.251  Sum_probs=119.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC---CEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG---KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL   94 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~---~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v   94 (193)
                      +||+++|++|||||||++++.+..+.. +.||.+..  ...+..+   ...+.+|||+|++.+..+...+++.+|++++|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            589999999999999999999888765 45666543  3334443   47899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCC--CCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           95 VDAYDKERFAESKKELDALLSDEA--LANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~--~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      +|++++++++.+..|+..+.....  ..+.|+++|+||.|+..  ....++... +...                ....+
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~-~~~~----------------~~~~~  143 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHAR-FAQA----------------NGMES  143 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHH-HHHH----------------cCCEE
Confidence            999999999999888777754332  24578999999999963  222222211 1111                11467


Q ss_pred             EEeeeecCCChhhHHHhhhhhc
Q 029437          171 FMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       171 ~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++||++|.|++++|++|.+.+
T Consensus       144 ~~iSAktg~gv~~lf~~l~~~l  165 (215)
T cd04109         144 CLVSAKTGDRVNLLFQQLAAEL  165 (215)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999998764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.96  E-value=1.1e-28  Score=170.76  Aligned_cols=153  Identities=17%  Similarity=0.305  Sum_probs=118.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEe----CCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSI----GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~----~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      +||+++|++|+|||||++++.+..+.. ..+|.+...  ..+..    ....+.+|||||++.+......+++.+|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            489999999999999999999987764 345554433  22333    24789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      |+|++++++++.+..|+..+..  ...+.|+++++||+|+...  ...++.......                 ..++++
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~--~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~  141 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEA--ECGDIPMVLVQTKIDLLDQAVITNEEAEALAKR-----------------LQLPLF  141 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHH--hCCCCCEEEEEEChhcccccCCCHHHHHHHHHH-----------------cCCeEE
Confidence            9999999999999888877643  2358999999999999642  233332221111                 114689


Q ss_pred             EeeeecCCChhhHHHhhhhhc
Q 029437          172 MCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       172 ~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++||++|.|++++|++|...+
T Consensus       142 ~~Sa~~~~~v~~l~~~l~~~~  162 (162)
T cd04106         142 RTSVKDDFNVTELFEYLAEKC  162 (162)
T ss_pred             EEECCCCCCHHHHHHHHHHhC
Confidence            999999999999999998653

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04140 ARHI_like ARHI subfamily

Probab=99.96  E-value=7e-29  Score=172.44  Aligned_cols=154  Identities=16%  Similarity=0.162  Sum_probs=116.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee-EE--EeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE-EL--SIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD   96 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d   96 (193)
                      +||+++|++|+|||||++++.+..+.. ..||.+.... .+  ......+.+|||+|++++..+...+++.+|++++|+|
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999988764 3344443222 12  2234678999999999999888888899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCC--CCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           97 AYDKERFAESKKELDALLSDE--ALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~--~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      ++++++++.+..|+..+....  ..++.|+++|+||+|+...  ...++... +...                ..+.+++
T Consensus        82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~~~----------------~~~~~~e  144 (165)
T cd04140          82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAA-CATE----------------WNCAFME  144 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHH-HHHH----------------hCCcEEE
Confidence            999999999888876653322  2368999999999999642  22222111 1100                1246899


Q ss_pred             eeeecCCChhhHHHhhhhh
Q 029437          173 CSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~  191 (193)
                      |||++|.|++++|++|.+.
T Consensus       145 ~SA~~g~~v~~~f~~l~~~  163 (165)
T cd04140         145 TSAKTNHNVQELFQELLNL  163 (165)
T ss_pred             eecCCCCCHHHHHHHHHhc
Confidence            9999999999999999864

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04112 Rab26 Rab26 subfamily

Probab=99.96  E-value=2.3e-28  Score=173.67  Aligned_cols=154  Identities=23%  Similarity=0.297  Sum_probs=119.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc--cCCCCCccee--EEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ--HQPTQYPTSE--ELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL   94 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~--~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v   94 (193)
                      +||+++|++|||||||++++.+..+..  ..+|.+....  .+..+  .+.+.+|||||++++......+++.+|++++|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            489999999999999999999988753  4455554332  23333  46899999999999998888899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      +|++++++++++..|+..+... ...+.|+++++||+|+..  ....++...... .                ...++++
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~-~----------------~~~~~~e  142 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGERLAK-E----------------YGVPFME  142 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHHHHHH-H----------------cCCeEEE
Confidence            9999999999998888777543 335789999999999963  223333222211 1                1247899


Q ss_pred             eeeecCCChhhHHHhhhhhc
Q 029437          173 CSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +||++|.|++++|++|.+.+
T Consensus       143 ~Sa~~~~~v~~l~~~l~~~~  162 (191)
T cd04112         143 TSAKTGLNVELAFTAVAKEL  162 (191)
T ss_pred             EeCCCCCCHHHHHHHHHHHH
Confidence            99999999999999998764

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04144 Ras2 Ras2 subfamily

Probab=99.96  E-value=7.3e-29  Score=176.09  Aligned_cols=154  Identities=19%  Similarity=0.273  Sum_probs=117.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA   97 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~   97 (193)
                      +|+++|.+|||||||++++..+.|.. ..+|.+.. ...+...+  +.+.+|||||++++..++..+++.+|++++|+|+
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI   80 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence            58999999999999999999888765 33454432 22333433  5689999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCC--CCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           98 YDKERFAESKKELDALLSDEA--LANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~--~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      +++++++.+..|+..+.....  ..+.|+++++||+|+...  ....+.. .+...                ..+.++++
T Consensus        81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~-~~~~~----------------~~~~~~e~  143 (190)
T cd04144          81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGA-ALARR----------------LGCEFIEA  143 (190)
T ss_pred             CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHH-HHHHH----------------hCCEEEEe
Confidence            999999999998887754322  357999999999999632  2222211 11111                12468999


Q ss_pred             eeecCCChhhHHHhhhhhc
Q 029437          174 SIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~~  192 (193)
                      ||++|.|++++|++|.+++
T Consensus       144 SAk~~~~v~~l~~~l~~~l  162 (190)
T cd04144         144 SAKTNVNVERAFYTLVRAL  162 (190)
T ss_pred             cCCCCCCHHHHHHHHHHHH
Confidence            9999999999999998764

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04134 Rho3 Rho3 subfamily

Probab=99.96  E-value=4e-29  Score=177.24  Aligned_cols=167  Identities=19%  Similarity=0.301  Sum_probs=118.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee-EEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE-ELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA   97 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~   97 (193)
                      ||+++|++|||||||++++.+..+.. ..||.+.... .+..  ....+.+|||+|++.+..+...++..+|++++|+|+
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv   81 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSV   81 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEEC
Confidence            79999999999999999999998875 3456544322 2223  347899999999999988888889999999999999


Q ss_pred             CChhhHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeee
Q 029437           98 YDKERFAESKK-ELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIV  176 (193)
Q Consensus        98 ~~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  176 (193)
                      +++++++.+.. |+..+...  .++.|+++|+||+|+.......+................ ..+. ..+.+.+++|||+
T Consensus        82 ~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~~~-~~~~~~~~e~SAk  157 (189)
T cd04134          82 DSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGL-AVAK-RINALRYLECSAK  157 (189)
T ss_pred             CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHH-HHHH-HcCCCEEEEccCC
Confidence            99999998874 55555432  358999999999999754332222111111110000000 0000 1123678999999


Q ss_pred             cCCChhhHHHhhhhhc
Q 029437          177 RKMGYGDGFKWLSQYI  192 (193)
Q Consensus       177 ~g~gv~el~~~i~~~~  192 (193)
                      +|.|++++|++|.+.+
T Consensus       158 ~~~~v~e~f~~l~~~~  173 (189)
T cd04134         158 LNRGVNEAFTEAARVA  173 (189)
T ss_pred             cCCCHHHHHHHHHHHH
Confidence            9999999999998653

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.96  E-value=1e-28  Score=178.09  Aligned_cols=167  Identities=22%  Similarity=0.274  Sum_probs=119.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee-EEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE-ELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD   96 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d   96 (193)
                      +||+|+|++|||||||+.++....|.. +.||...... .+..  ..+.+.+|||+|++.+..+.+.+++.+|++++|||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd   81 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD   81 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence            689999999999999999999988875 5577665432 3333  34789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH-HHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437           97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE-EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI  175 (193)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  175 (193)
                      ++++++++.+..+|...+.. ..++.|+++|+||+|+...... .++.+. ...... ......+++. .+.+.+++|||
T Consensus        82 is~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~-~~~pIs-~e~g~~~ak~-~~~~~y~E~SA  157 (222)
T cd04173          82 ISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQ-RLIPVT-HEQGTVLAKQ-VGAVSYVECSS  157 (222)
T ss_pred             CCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhc-cCCccC-HHHHHHHHHH-cCCCEEEEcCC
Confidence            99999999997666655443 3468999999999999643211 111110 000000 0011111111 12358999999


Q ss_pred             ecCCC-hhhHHHhhhhh
Q 029437          176 VRKMG-YGDGFKWLSQY  191 (193)
Q Consensus       176 ~~g~g-v~el~~~i~~~  191 (193)
                      +++.| |+++|+....+
T Consensus       158 k~~~~~V~~~F~~~~~~  174 (222)
T cd04173         158 RSSERSVRDVFHVATVA  174 (222)
T ss_pred             CcCCcCHHHHHHHHHHH
Confidence            99885 99999987653

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01861 Rab6 Rab6 subfamily

Probab=99.96  E-value=4e-28  Score=167.83  Aligned_cols=154  Identities=19%  Similarity=0.278  Sum_probs=119.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      .||+++|++|||||||++++.+..+.. ..++.+.  ....+..++  ..+.+||+||+..+..+...+++.+|++++|+
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            489999999999999999999888764 3344433  333444444  57999999999999999899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      |++++++++.+..|+..+..... .+.|+++++||+|+...  ...++...... .                ..+.++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~~-~----------------~~~~~~~~  142 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKAK-E----------------LNAMFIET  142 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHHH-H----------------hCCEEEEE
Confidence            99999999999988888765432 37999999999999522  22222222211 1                12568999


Q ss_pred             eeecCCChhhHHHhhhhhc
Q 029437          174 SIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~~  192 (193)
                      ||++|.|+++++++|.+.+
T Consensus       143 Sa~~~~~v~~l~~~i~~~l  161 (161)
T cd01861         143 SAKAGHNVKELFRKIASAL  161 (161)
T ss_pred             eCCCCCCHHHHHHHHHHhC
Confidence            9999999999999998754

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04113 Rab4 Rab4 subfamily

Probab=99.96  E-value=3.5e-28  Score=168.19  Aligned_cols=154  Identities=21%  Similarity=0.296  Sum_probs=119.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      +||+++|++|+|||||++++.+.++.. ..++.+..  ...+..+  ...+.+||+||++.+......+++.+|++++|+
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            589999999999999999999888754 33444432  2233333  367899999999999988889999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      |+++++++..+..|+..+... ..++.|+++++||.|+...  ...++...... .                ..+.++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-~----------------~~~~~~~~  142 (161)
T cd04113          81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQ-E----------------NGLLFLET  142 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHH-H----------------cCCEEEEE
Confidence            999999999998888876433 3468999999999999632  22333222221 1                12579999


Q ss_pred             eeecCCChhhHHHhhhhhc
Q 029437          174 SIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~~  192 (193)
                      ||++|.|++++|+++.+.+
T Consensus       143 Sa~~~~~i~~~~~~~~~~~  161 (161)
T cd04113         143 SALTGENVEEAFLKCARSI  161 (161)
T ss_pred             ECCCCCCHHHHHHHHHHhC
Confidence            9999999999999998764

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=9.4e-29  Score=166.91  Aligned_cols=155  Identities=22%  Similarity=0.279  Sum_probs=128.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCCcc----eeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQYPT----SEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~t~~~~----~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      +...+|++++|+.|+|||+|+.+++...|.+.. .|.+..    ...++...+++++|||+|++++++....+++.+-++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            446789999999999999999999999998744 455543    344555679999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC--CCCCHHH---HHHhhCCCccccCCCccccCCCCCc
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP--YAASEEE---LRYHLGLSNFTTGKGKVNLADSNVR  166 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  166 (193)
                      |+|+|++.+++|..+..|+.++.++. .++..+++++||+|+.  +.++.+|   ..++.++                  
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgL------------------  143 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEGEAFAREHGL------------------  143 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHHHHHHHHcCc------------------
Confidence            99999999999999999999996653 5799999999999998  4444444   4444433                  


Q ss_pred             ceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          167 PLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       167 ~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                        .++++||++++|++|.|..+.+.+
T Consensus       144 --ifmETSakt~~~VEEaF~nta~~I  167 (216)
T KOG0098|consen  144 --IFMETSAKTAENVEEAFINTAKEI  167 (216)
T ss_pred             --eeehhhhhhhhhHHHHHHHHHHHH
Confidence              457999999999999998766543

>cd04177 RSR1 RSR1 subgroup

Probab=99.96  E-value=1.2e-28  Score=171.72  Aligned_cols=157  Identities=18%  Similarity=0.256  Sum_probs=121.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      ++||+++|++|||||||++++.+..+.. ..+|.+.. ...+..+  ...+.+|||||++++..++..+++.++++++|+
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            4789999999999999999999888754 34454432 2233333  368899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      |++++++++....|...+.......+.|+++++||.|+....  ..++... +....               +..+++++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~-~~~~~---------------~~~~~~~~  144 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVS-LSQQW---------------GNVPFYET  144 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHH-HHHHc---------------CCceEEEe
Confidence            999999999998888877654445689999999999996422  2222111 11111               22578999


Q ss_pred             eeecCCChhhHHHhhhhhc
Q 029437          174 SIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~~  192 (193)
                      ||++|.|++++|++|.+.+
T Consensus       145 SA~~~~~i~~~f~~i~~~~  163 (168)
T cd04177         145 SARKRTNVDEVFIDLVRQI  163 (168)
T ss_pred             eCCCCCCHHHHHHHHHHHH
Confidence            9999999999999998754

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01866 Rab2 Rab2 subfamily

Probab=99.96  E-value=4.1e-28  Score=169.07  Aligned_cols=156  Identities=21%  Similarity=0.264  Sum_probs=121.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc--eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      ..+||+++|++|+|||||++++.+.++... .++.+..  ...+..+  ...+.+||+||++.+..+...+++.+|++++
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~   82 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   82 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence            347999999999999999999998887653 3444432  2333333  3689999999999999888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      |+|++++++++.+..|+..+... ..++.|+++++||.|+..  ....++.......                 ....++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~  144 (168)
T cd01866          83 VYDITRRETFNHLTSWLEDARQH-SNSNMTIMLIGNKCDLESRREVSYEEGEAFAKE-----------------HGLIFM  144 (168)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHHH-----------------cCCEEE
Confidence            99999999999999888877543 236899999999999973  2233333222211                 124689


Q ss_pred             EeeeecCCChhhHHHhhhhhc
Q 029437          172 MCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       172 ~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++||++|.|++++|+++.+.+
T Consensus       145 e~Sa~~~~~i~~~~~~~~~~~  165 (168)
T cd01866         145 ETSAKTASNVEEAFINTAKEI  165 (168)
T ss_pred             EEeCCCCCCHHHHHHHHHHHH
Confidence            999999999999999998764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01863 Rab18 Rab18 subfamily

Probab=99.96  E-value=4.1e-28  Score=167.78  Aligned_cols=155  Identities=23%  Similarity=0.306  Sum_probs=122.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      +||+++|++|||||||++++.+..+.. ..++.+...  ..+.+.  ...+.+||+||++.+.......++.+|++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            589999999999999999999888754 445555432  223333  368999999999999888888899999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC-CCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEee
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP-YAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS  174 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  174 (193)
                      |++++++++.+..|+..+.......+.|+++++||+|+. .....++.......                 ..+.++++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~-----------------~~~~~~~~S  143 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARK-----------------HNMLFIETS  143 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHH-----------------cCCEEEEEe
Confidence            999999999988887777665556789999999999997 33333333222211                 125689999


Q ss_pred             eecCCChhhHHHhhhhhc
Q 029437          175 IVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       175 a~~g~gv~el~~~i~~~~  192 (193)
                      |++|.|++++++++.+++
T Consensus       144 a~~~~gi~~~~~~~~~~~  161 (161)
T cd01863         144 AKTRDGVQQAFEELVEKI  161 (161)
T ss_pred             cCCCCCHHHHHHHHHHhC
Confidence            999999999999998764

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.96  E-value=5.6e-28  Score=177.27  Aligned_cols=155  Identities=18%  Similarity=0.271  Sum_probs=122.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCC-cceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQY-PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD   96 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d   96 (193)
                      +||+++|++|+|||||++++....|.. ..||.. .....+..++  +.+.+|||+|++.+..+...++..+|++++|||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd   80 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS   80 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence            489999999999999999999888874 445654 2333344444  778999999999998888888899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCC--------CCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCc
Q 029437           97 AYDKERFAESKKELDALLSDE--------ALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVR  166 (193)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (193)
                      ++++++|+++..|+..+....        ...++|+++++||+|+..  ....+++.+.....                .
T Consensus        81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~----------------~  144 (247)
T cd04143          81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD----------------E  144 (247)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhc----------------C
Confidence            999999999998888876431        235799999999999963  44555555444321                1


Q ss_pred             ceEEEEeeeecCCChhhHHHhhhhh
Q 029437          167 PLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       167 ~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                      .+.++++||++|.|++++|++|...
T Consensus       145 ~~~~~evSAktg~gI~elf~~L~~~  169 (247)
T cd04143         145 NCAYFEVSAKKNSNLDEMFRALFSL  169 (247)
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            3578999999999999999999864

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04124 RabL2 RabL2 subfamily

Probab=99.96  E-value=1.3e-28  Score=170.38  Aligned_cols=152  Identities=20%  Similarity=0.236  Sum_probs=115.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCCccee--EEE--eCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQYPTSE--ELS--IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~t~~~~~~--~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      +||+++|++|||||||++++...++.+.. ++......  ...  .....+.+|||+|++.+..++..+++.+|++++|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999988876532 34333221  222  23467899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI  175 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  175 (193)
                      |++++.+++.+..|+..+...  .++.|+++++||+|+.... ..+.. .+.. .               ..++++++||
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~-~~~~-~---------------~~~~~~~~Sa  140 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKF-NFAE-K---------------HNLPLYYVSA  140 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHH-HHHH-H---------------cCCeEEEEeC
Confidence            999999998888888777432  3579999999999985321 11111 1100 0               1247899999


Q ss_pred             ecCCChhhHHHhhhhhc
Q 029437          176 VRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       176 ~~g~gv~el~~~i~~~~  192 (193)
                      ++|.|++++|+.+.+.+
T Consensus       141 ~~~~gv~~l~~~l~~~~  157 (161)
T cd04124         141 ADGTNVVKLFQDAIKLA  157 (161)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999999998653

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.96  E-value=6.5e-28  Score=168.33  Aligned_cols=158  Identities=23%  Similarity=0.295  Sum_probs=120.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--EEEEEEEcCChhhhH-hhHHhhcccCCEEEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQIAR-RVWKDYYAKVDAVVY   93 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~-~~~~~~~~~~d~vl~   93 (193)
                      .++|+++|++|+|||||++++....+.. ..++.+..  ...+..++  ..+.+||++|++.++ .+...+++.+|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            3799999999999999999999888764 34555432  23344444  789999999999886 467788899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC-HHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      |+|++++.+++.+..|...+.......++|+++++||+|+..... ..+....+...                ..+.+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~e  145 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADA----------------HSMPLFE  145 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHH----------------cCCcEEE
Confidence            999999999999999888876655556899999999999863221 11222222111                1256899


Q ss_pred             eeeec---CCChhhHHHhhhhhcC
Q 029437          173 CSIVR---KMGYGDGFKWLSQYIK  193 (193)
Q Consensus       173 ~Sa~~---g~gv~el~~~i~~~~~  193 (193)
                      |||++   +.|++++|..+.+.++
T Consensus       146 ~Sa~~~~~~~~i~~~f~~l~~~~~  169 (170)
T cd04115         146 TSAKDPSENDHVEAIFMTLAHKLK  169 (170)
T ss_pred             EeccCCcCCCCHHHHHHHHHHHhh
Confidence            99999   8999999999988764

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=6.6e-29  Score=163.74  Aligned_cols=160  Identities=21%  Similarity=0.280  Sum_probs=127.5

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCC-CCc--c--eeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCE
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPT-QYP--T--SEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDA   90 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t-~~~--~--~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~   90 (193)
                      .....+||+++|.+|+|||||+.++....|.+..|+ ++.  .  ...++....++.+|||+|+++++.+.+.+++.+-+
T Consensus         7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG   86 (209)
T KOG0080|consen    7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG   86 (209)
T ss_pred             CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence            355679999999999999999999999998886664 543  3  34445566899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC--CCCCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437           91 VVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP--YAASEEELRYHLGLSNFTTGKGKVNLADSNVRPL  168 (193)
Q Consensus        91 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (193)
                      +|+|+|++.+++|..+..|+.++-.-...+++-.++|+||+|..  +.++.+|     ++.+++            ...+
T Consensus        87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reE-----G~kfAr------------~h~~  149 (209)
T KOG0080|consen   87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREE-----GLKFAR------------KHRC  149 (209)
T ss_pred             eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHH-----HHHHHH------------hhCc
Confidence            99999999999999998888888543344577778999999986  4445544     222210            0124


Q ss_pred             EEEEeeeecCCChhhHHHhhhhhc
Q 029437          169 EVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       169 ~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      -+++|||++.+|++..|+.+..+|
T Consensus       150 LFiE~SAkt~~~V~~~FeelveKI  173 (209)
T KOG0080|consen  150 LFIECSAKTRENVQCCFEELVEKI  173 (209)
T ss_pred             EEEEcchhhhccHHHHHHHHHHHH
Confidence            578999999999999999887654

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.96  E-value=4.5e-28  Score=168.09  Aligned_cols=153  Identities=18%  Similarity=0.337  Sum_probs=116.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC--Cccc-cCCCCCccee--EEE---eCCEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDE--RLVQ-HQPTQYPTSE--ELS---IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~--~~~~-~~~t~~~~~~--~~~---~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      +||+++|++|||||||++++...  .+.. ..+|.+....  .+.   .....+.+|||||++.+..+...++..+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            48999999999999999999864  4443 3455554332  222   23488999999999999998899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      +|+|+++++++..+..|+..+....  .+.|+++++||+|+....  ...+. ..+...                ..+.+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~-~~~~~~----------------~~~~~  141 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQA-QAFAQA----------------NQLKF  141 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHH-HHHHHH----------------cCCeE
Confidence            9999999999998888887765432  579999999999996432  22111 111111                12468


Q ss_pred             EEeeeecCCChhhHHHhhhhhc
Q 029437          171 FMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       171 ~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++|||++|.|++++|++|.+.+
T Consensus       142 ~~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         142 FKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             EEEeCCCCCChHHHHHHHHHHh
Confidence            9999999999999999998865

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>PLN03118 Rab family protein; Provisional

Probab=99.96  E-value=4.9e-28  Score=174.54  Aligned_cols=159  Identities=21%  Similarity=0.290  Sum_probs=123.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce--eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      .+..+||+|+|++|+|||||++++.+..+....++.+...  ..+..+  .+.+.+|||||++.+..++..+++.+|+++
T Consensus        11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v   90 (211)
T PLN03118         11 YDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII   90 (211)
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            4567899999999999999999999988776666665433  334444  367899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCC-CCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDE-ALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      +|+|+++++++..+..+|...+... ...+.|+++|+||+|+....  ..++...... .                ..+.
T Consensus        91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~-~----------------~~~~  153 (211)
T PLN03118         91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAK-E----------------HGCL  153 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-H----------------cCCE
Confidence            9999999999999988766654432 23578999999999997432  2222211111 0                1246


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++|||++|.|++++|++|.+.+
T Consensus       154 ~~e~SAk~~~~v~~l~~~l~~~~  176 (211)
T PLN03118        154 FLECSAKTRENVEQCFEELALKI  176 (211)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999999999998754

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.96  E-value=2.4e-28  Score=173.93  Aligned_cols=147  Identities=18%  Similarity=0.335  Sum_probs=116.5

Q ss_pred             EcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEE--Ee--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCCh
Q 029437           26 LGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEEL--SI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDK  100 (193)
Q Consensus        26 ~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~--~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~  100 (193)
                      +|++|||||||++++....+.. ..||.+......  ..  ..+.+.+|||+|++++..++..+++.+|++++|+|++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            5999999999999999888765 567776544333  22  357899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCC
Q 029437          101 ERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKM  179 (193)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  179 (193)
                      .++..+..|+..+...  ..++|+++|+||+|+... ...++.  .+.  .              ...+.+++|||++|.
T Consensus        81 ~S~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~--~~~--~--------------~~~~~~~e~SAk~~~  140 (200)
T smart00176       81 VTYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKDRKVKAKSI--TFH--R--------------KKNLQYYDISAKSNY  140 (200)
T ss_pred             HHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccCCHHHH--HHH--H--------------HcCCEEEEEeCCCCC
Confidence            9999998888877553  258999999999998632 222221  110  0              023678999999999


Q ss_pred             ChhhHHHhhhhhc
Q 029437          180 GYGDGFKWLSQYI  192 (193)
Q Consensus       180 gv~el~~~i~~~~  192 (193)
                      ||+++|++|.+.+
T Consensus       141 ~v~~~F~~l~~~i  153 (200)
T smart00176      141 NFEKPFLWLARKL  153 (200)
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999998754

Ran is involved in the active transport of proteins through nuclear pores.

>cd04125 RabA_like RabA-like subfamily

Probab=99.96  E-value=2.7e-28  Score=172.94  Aligned_cols=154  Identities=21%  Similarity=0.287  Sum_probs=119.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      +||+++|++|||||||++++.+..+.. ..+|.+...  ..+..+  .+.+.+||++|++.+...+...++.+|++++|+
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            589999999999999999999998875 456655432  333433  467899999999999989999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      |+++++++..+..|+..+... ...+.|+++++||+|+....  ..++.. .+...                ..++++++
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~-~~~~~~~ivv~nK~Dl~~~~~v~~~~~~-~~~~~----------------~~~~~~ev  142 (188)
T cd04125          81 DVTDQESFENLKFWINEINRY-ARENVIKVIVANKSDLVNNKVVDSNIAK-SFCDS----------------LNIPFFET  142 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECCCCcccccCCHHHHH-HHHHH----------------cCCeEEEE
Confidence            999999999999988877543 23468999999999987322  222221 11100                12468999


Q ss_pred             eeecCCChhhHHHhhhhhc
Q 029437          174 SIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~~  192 (193)
                      ||++|.|++++|++|.+.+
T Consensus       143 Sa~~~~~i~~~f~~l~~~~  161 (188)
T cd04125         143 SAKQSINVEEAFILLVKLI  161 (188)
T ss_pred             eCCCCCCHHHHHHHHHHHH
Confidence            9999999999999998764

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01893 Miro1 Miro1 subfamily

Probab=99.96  E-value=4.8e-28  Score=168.37  Aligned_cols=160  Identities=15%  Similarity=0.237  Sum_probs=114.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcc-eeE--EEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPT-SEE--LSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA   97 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~-~~~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~   97 (193)
                      +||+++|++|||||||++++....+....++.... ...  +....+.+.+|||||...+...+...+..+|++++|+|+
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence            48999999999999999999998886654432221 222  223457899999999988877777778999999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeec
Q 029437           98 YDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVR  177 (193)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  177 (193)
                      +++.+++.+...|...+.... .+.|+++++||+|+.+........+......           ........+++|||++
T Consensus        81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~e~Sa~~  148 (166)
T cd01893          81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIM-----------NEFREIETCVECSAKT  148 (166)
T ss_pred             CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHH-----------HHHhcccEEEEecccc
Confidence            999999988765555444332 4899999999999975433211111100000           0000113689999999


Q ss_pred             CCChhhHHHhhhhhc
Q 029437          178 KMGYGDGFKWLSQYI  192 (193)
Q Consensus       178 g~gv~el~~~i~~~~  192 (193)
                      |.|++++|+.+.+.+
T Consensus       149 ~~~v~~lf~~~~~~~  163 (166)
T cd01893         149 LINVSEVFYYAQKAV  163 (166)
T ss_pred             ccCHHHHHHHHHHHh
Confidence            999999999988754

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01862 Rab7 Rab7 subfamily

Probab=99.96  E-value=9.1e-28  Score=167.70  Aligned_cols=155  Identities=22%  Similarity=0.378  Sum_probs=118.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc--eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      +||+++|++|||||||++++.+..+... .++.+..  ...+..++  ..+.+||+||++.+..+...+++.+|++++|+
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            5899999999999999999998876543 3444432  23344443  66789999999999988889999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCC---CCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           96 DAYDKERFAESKKELDALLSDEA---LANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~---~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      |+++++++++...|...++....   ..++|+++++||+|+..  ....++...... ..               ....+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~~---------------~~~~~  144 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ-SN---------------GNIPY  144 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH-Hc---------------CCceE
Confidence            99999998888877776654432   34899999999999973  223444333222 11               23678


Q ss_pred             EEeeeecCCChhhHHHhhhhh
Q 029437          171 FMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       171 ~~~Sa~~g~gv~el~~~i~~~  191 (193)
                      +++||++|.|+++++++|.+.
T Consensus       145 ~~~Sa~~~~gv~~l~~~i~~~  165 (172)
T cd01862         145 FETSAKEAINVEQAFETIARK  165 (172)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            999999999999999999865

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.96  E-value=1.3e-27  Score=165.66  Aligned_cols=155  Identities=19%  Similarity=0.289  Sum_probs=120.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce-eEEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTS-EELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD   96 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~-~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d   96 (193)
                      +||+++|++|||||||++++.+..+... .++..... .....  ....+.+||+||+..+......+++.+|++++|+|
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence            5899999999999999999998887643 33333222 22223  34689999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEee
Q 029437           97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS  174 (193)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  174 (193)
                      +.++.++.....++..+.......++|+++++||+|+..  .....+...... .                ...+++++|
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~-~----------------~~~~~~~~S  143 (164)
T cd04139          81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLAR-Q----------------WGVPYVETS  143 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHH-H----------------hCCeEEEee
Confidence            999999999999999887765556899999999999975  222222221111 1                124689999


Q ss_pred             eecCCChhhHHHhhhhhc
Q 029437          175 IVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       175 a~~g~gv~el~~~i~~~~  192 (193)
                      |++|.|++++|++|.+.+
T Consensus       144 a~~~~gi~~l~~~l~~~~  161 (164)
T cd04139         144 AKTRQNVEKAFYDLVREI  161 (164)
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999999998764

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.96  E-value=9.3e-28  Score=170.01  Aligned_cols=154  Identities=16%  Similarity=0.209  Sum_probs=115.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC---CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG---KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~---~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      +||+++|++|+|||||++++.+..+.. ..+|..... ..+...   .+.+.+|||||++.+..+...++..+|++++|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   80 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY   80 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence            489999999999999999999988764 334443332 223332   468999999999999998888999999999999


Q ss_pred             ECCChhhHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCCCCCCC------CHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437           96 DAYDKERFAESKK-ELDALLSDEALANVPFLVLGNKIDIPYAA------SEEELRYHLGLSNFTTGKGKVNLADSNVRPL  168 (193)
Q Consensus        96 d~~~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~D~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (193)
                      |++++++++++.. |+..+. . ..++.|+++++||.|+....      ..++..+... ..               +..
T Consensus        81 d~~~~~s~~~~~~~~~~~~~-~-~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~-~~---------------~~~  142 (187)
T cd04132          81 AVDNPTSLDNVEDKWFPEVN-H-FCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAK-KQ---------------GAF  142 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHH-H-hCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHH-Hc---------------CCc
Confidence            9999999998875 444443 2 23589999999999986422      1222211111 11               223


Q ss_pred             EEEEeeeecCCChhhHHHhhhhhc
Q 029437          169 EVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       169 ~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .+++|||++|.|++++|+.+.+.+
T Consensus       143 ~~~e~Sa~~~~~v~~~f~~l~~~~  166 (187)
T cd04132         143 AYLECSAKTMENVEEVFDTAIEEA  166 (187)
T ss_pred             EEEEccCCCCCCHHHHHHHHHHHH
Confidence            689999999999999999998654

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04142 RRP22 RRP22 subfamily

Probab=99.96  E-value=6.2e-28  Score=172.00  Aligned_cols=155  Identities=17%  Similarity=0.158  Sum_probs=113.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--EEEEEEEcCChhhhH--------hhHHhhccc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQIAR--------RVWKDYYAK   87 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~--------~~~~~~~~~   87 (193)
                      +||+|+|++|||||||++++.+.+|.. ..||....  ...+.+++  +.+.+|||||...+.        ......+..
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            489999999999999999999988865 45555432  23344444  678899999965431        112344689


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHcCC--CCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCC
Q 029437           88 VDAVVYLVDAYDKERFAESKKELDALLSDE--ALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADS  163 (193)
Q Consensus        88 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (193)
                      +|++++|+|++++++++.+..|+..+....  ...++|+++++||+|+...  ...++...... ..             
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~-~~-------------  146 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR-KS-------------  146 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH-Hh-------------
Confidence            999999999999999999998888886543  2468999999999999632  22222211110 00             


Q ss_pred             CCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          164 NVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                        ..+++++|||++|.|++++|+.+.+.
T Consensus       147 --~~~~~~e~Sak~g~~v~~lf~~i~~~  172 (198)
T cd04142         147 --WKCGYLECSAKYNWHILLLFKELLIS  172 (198)
T ss_pred             --cCCcEEEecCCCCCCHHHHHHHHHHH
Confidence              23678999999999999999998764

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.96  E-value=2e-27  Score=164.67  Aligned_cols=154  Identities=23%  Similarity=0.345  Sum_probs=119.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      +||+++|++|||||||++++.+..+.. ..++.+.  ....+...+  ..+.+||+||+..+......+++.+|++++|+
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            589999999999999999999887654 2344443  233444444  68899999999999988899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      |++++.+++.+..|+..+.... .+++|+++++||+|+...  ...++...... .                ..+.++++
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~-~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~-~----------------~~~~~~e~  142 (164)
T smart00175       81 DITNRESFENLKNWLKELREYA-DPNVVIMLVGNKSDLEDQRQVSREEAEAFAE-E----------------HGLPFFET  142 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcccccCCCHHHHHHHHH-H----------------cCCeEEEE
Confidence            9999999999888777765433 258999999999998742  23333322211 1                12468999


Q ss_pred             eeecCCChhhHHHhhhhhc
Q 029437          174 SIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~~  192 (193)
                      ||++|.|+++++++|.+.+
T Consensus       143 Sa~~~~~i~~l~~~i~~~~  161 (164)
T smart00175      143 SAKTNTNVEEAFEELAREI  161 (164)
T ss_pred             eCCCCCCHHHHHHHHHHHH
Confidence            9999999999999998764

Rab GTPases are implicated in vesicle trafficking.

>PLN03110 Rab GTPase; Provisional

Probab=99.96  E-value=1.6e-27  Score=172.26  Aligned_cols=157  Identities=20%  Similarity=0.276  Sum_probs=122.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      +..+||+++|++|+|||||++++.+..+.. ..+|.+..  ...+..++  +.+.+||++|++++..++..+++.+++++
T Consensus        10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i   89 (216)
T PLN03110         10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   89 (216)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence            456899999999999999999999988764 44565543  33444443  68999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      +|+|++++++++.+..|+..+... ...+.|+++++||+|+...  ...++. ..+...                ..+++
T Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~-~~l~~~----------------~~~~~  151 (216)
T PLN03110         90 LVYDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDG-QALAEK----------------EGLSF  151 (216)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHH-HHHHHH----------------cCCEE
Confidence            999999999999998888776543 3358999999999998632  222222 222111                23579


Q ss_pred             EEeeeecCCChhhHHHhhhhhc
Q 029437          171 FMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       171 ~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++||++|.|++++|++|.+.+
T Consensus       152 ~e~SA~~g~~v~~lf~~l~~~i  173 (216)
T PLN03110        152 LETSALEATNVEKAFQTILLEI  173 (216)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHH
Confidence            9999999999999999997754

>cd01892 Miro2 Miro2 subfamily

Probab=99.96  E-value=3e-27  Score=164.82  Aligned_cols=153  Identities=18%  Similarity=0.223  Sum_probs=118.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCCCCCcce--eEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLV--QHQPTQYPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      ++.+||+++|++|||||||++++.+..+.  .+.||.+...  ..+..++  ..+.+||++|++.+..+...++..+|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            34589999999999999999999999886  3556765432  3344444  6789999999998888888888999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC-----CHHHHHHhhCCCccccCCCccccCCCCCc
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA-----SEEELRYHLGLSNFTTGKGKVNLADSNVR  166 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (193)
                      ++|+|++++.+++.+..|+..+..   ..++|+++|+||+|+....     ..+++.+.++..                 
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-----------------  141 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP-----------------  141 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCCC-----------------
Confidence            999999999999888777765522   2479999999999996322     122333333221                 


Q ss_pred             ceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          167 PLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       167 ~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                        .++++||++|.|++++|+.|.+.+
T Consensus       142 --~~~~~Sa~~~~~v~~lf~~l~~~~  165 (169)
T cd01892         142 --PPLHFSSKLGDSSNELFTKLATAA  165 (169)
T ss_pred             --CCEEEEeccCccHHHHHHHHHHHh
Confidence              247999999999999999998753

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04118 Rab24 Rab24 subfamily

Probab=99.96  E-value=2.2e-27  Score=168.90  Aligned_cols=153  Identities=18%  Similarity=0.231  Sum_probs=117.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc--cCCCCCcce--eEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ--HQPTQYPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYL   94 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v   94 (193)
                      +||+++|++|+|||||++++.++.+..  +.+|.+...  ..+..++  +.+.+||++|++++..+...++..+|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            489999999999999999999988764  555665432  2344443  5678999999999988888889999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC------CHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437           95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA------SEEELRYHLGLSNFTTGKGKVNLADSNVRPL  168 (193)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (193)
                      +|++++++++.+..|+..+...  .++.|+++|+||+|+....      ..++...... .                ...
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~-~----------------~~~  141 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFAD-E----------------IKA  141 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHH-H----------------cCC
Confidence            9999999999888887776442  2479999999999986321      1111111110 0                124


Q ss_pred             EEEEeeeecCCChhhHHHhhhhhc
Q 029437          169 EVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       169 ~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .++++||++|.|++++|++|.+.+
T Consensus       142 ~~~~~Sa~~~~gv~~l~~~i~~~~  165 (193)
T cd04118         142 QHFETSSKTGQNVDELFQKVAEDF  165 (193)
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHH
Confidence            689999999999999999998653

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>PLN03108 Rab family protein; Provisional

Probab=99.96  E-value=3.4e-27  Score=169.87  Aligned_cols=157  Identities=24%  Similarity=0.292  Sum_probs=121.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      ...+||+|+|++|+|||||++++....+.. ..+|.+..  ...+...  .+.+.+|||+|++.+..+...++..+|+++
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            345899999999999999999999887765 34555543  2234443  367899999999999988888999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      +|+|++++++++.+..|+..+... ..++.|+++++||+|+..  ....++.......                 ..+.+
T Consensus        84 lv~D~~~~~s~~~l~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~  145 (210)
T PLN03108         84 LVYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-----------------HGLIF  145 (210)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCccccCCCHHHHHHHHHH-----------------cCCEE
Confidence            999999999999998888776443 235899999999999963  3333333322211                 12468


Q ss_pred             EEeeeecCCChhhHHHhhhhhc
Q 029437          171 FMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       171 ~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++||++|.|++++|+++.+.+
T Consensus       146 ~e~Sa~~~~~v~e~f~~l~~~~  167 (210)
T PLN03108        146 MEASAKTAQNVEEAFIKTAAKI  167 (210)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHH
Confidence            9999999999999999998654

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.3e-28  Score=159.48  Aligned_cols=168  Identities=36%  Similarity=0.573  Sum_probs=152.7

Q ss_pred             hCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           14 LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        14 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      +-....+.+|+++|-.|+|||++..++.-.+...+.||++.+.+.+.+++.++++||.+|+-+.+..+.-++.+.|++||
T Consensus        12 L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   12 LQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             hcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            33556789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      |+|.+|.+........+..++.+....+..++++.||.|........|....++++..         .+   +.+.++.+
T Consensus        92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~L---------k~---r~~~Iv~t  159 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKL---------KD---RIWQIVKT  159 (182)
T ss_pred             EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHH---------hh---heeEEEee
Confidence            9999999988888888888888888888999999999999988888999888887772         22   45889999


Q ss_pred             eeecCCChhhHHHhhhhhcC
Q 029437          174 SIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~~~  193 (193)
                      ||.+|+|+++.++|+.+.++
T Consensus       160 SA~kg~Gld~~~DWL~~~l~  179 (182)
T KOG0072|consen  160 SAVKGEGLDPAMDWLQRPLK  179 (182)
T ss_pred             ccccccCCcHHHHHHHHHHh
Confidence            99999999999999988653

>cd00154 Rab Rab family

Probab=99.96  E-value=5.1e-27  Score=161.34  Aligned_cols=152  Identities=25%  Similarity=0.345  Sum_probs=120.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcceeEE--Ee--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTSEEL--SI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~~~~--~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      +||+++|++|||||||++++.+..+... .+|.+......  ..  ....+.+||+||+..+.......++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999887764 45555544433  32  3478899999999999988888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC--CCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP--YAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      |++++++++.+..|+..+.... ..+.|+++++||+|+.  .....+++.+....                 ...+++++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~  142 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAKE-----------------NGLLFFET  142 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHHH-----------------cCCeEEEE
Confidence            9999999999988777776543 3579999999999995  33344444433321                 13579999


Q ss_pred             eeecCCChhhHHHhhhh
Q 029437          174 SIVRKMGYGDGFKWLSQ  190 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~  190 (193)
                      ||++|.|+++++++|.+
T Consensus       143 sa~~~~~i~~~~~~i~~  159 (159)
T cd00154         143 SAKTGENVEELFQSLAE  159 (159)
T ss_pred             ecCCCCCHHHHHHHHhC
Confidence            99999999999999863

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04148 RGK RGK subfamily

Probab=99.96  E-value=2.3e-27  Score=171.92  Aligned_cols=153  Identities=15%  Similarity=0.161  Sum_probs=113.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc--ccCCCCC--cceeEEEe--CCEEEEEEEcCChhhhHhhHHhhcc-cCCEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLV--QHQPTQY--PTSEELSI--GKIKFKAFDLGGHQIARRVWKDYYA-KVDAVVY   93 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~t~~--~~~~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~-~~d~vl~   93 (193)
                      +||+++|++|+|||||++++..+.+.  ...++.+  .....+..  ....+.+||++|++  ......++. .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            48999999999999999999888774  3444543  33333444  45789999999998  223344556 8999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      |+|++++.++..+..|+..+.......+.|+++|+||+|+....  ..++. ..+...                ..+.++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~-~~~a~~----------------~~~~~~  141 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEG-RACAVV----------------FDCKFI  141 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHH-HHHHHH----------------cCCeEE
Confidence            99999999999998888877654444689999999999986432  22221 111100                124689


Q ss_pred             EeeeecCCChhhHHHhhhhhc
Q 029437          172 MCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       172 ~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +|||++|.|++++|++|.+.+
T Consensus       142 e~SA~~~~gv~~l~~~l~~~~  162 (221)
T cd04148         142 ETSAGLQHNVDELLEGIVRQI  162 (221)
T ss_pred             EecCCCCCCHHHHHHHHHHHH
Confidence            999999999999999998765

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.96  E-value=3.6e-27  Score=168.42  Aligned_cols=155  Identities=20%  Similarity=0.227  Sum_probs=120.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCC-cceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQH-QPTQY-PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA   97 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~-~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~   97 (193)
                      ||+++|++|+|||||++++.+..+... .+|.. .....+.+.+  +.+++||+||+..+..++..++..+|++++|+|+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~   80 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV   80 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence            589999999999999999999887653 23432 2333444444  6889999999999988888889999999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC---CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEee
Q 029437           98 YDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA---SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS  174 (193)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  174 (193)
                      +++.+++.+..|+..+.......++|+++++||+|+....   ...+..+.....                ....++++|
T Consensus        81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~----------------~~~~~~~~S  144 (198)
T cd04147          81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELD----------------WNCGFVETS  144 (198)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhh----------------cCCcEEEec
Confidence            9999999999888888766555689999999999996421   122222111100                124688999


Q ss_pred             eecCCChhhHHHhhhhhc
Q 029437          175 IVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       175 a~~g~gv~el~~~i~~~~  192 (193)
                      |++|.|++++|++|.+.+
T Consensus       145 a~~g~gv~~l~~~l~~~~  162 (198)
T cd04147         145 AKDNENVLEVFKELLRQA  162 (198)
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998764

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04135 Tc10 TC10 subfamily

Probab=99.96  E-value=1.2e-27  Score=167.54  Aligned_cols=169  Identities=20%  Similarity=0.265  Sum_probs=117.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD   96 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d   96 (193)
                      +||+++|++|+|||||++++..+.+.. ..++.... ...+..++  ..+.+|||||+..+.......++.+|++++|+|
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~   80 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS   80 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence            589999999999999999999988764 33444322 22344443  568899999999998888888999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeee
Q 029437           97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIV  176 (193)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  176 (193)
                      ++++.+++.+...|...+... .++.|+++++||+|+.+.....+............. ....+++. .+...+++|||+
T Consensus        81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~-~~~~~~~e~Sa~  157 (174)
T cd04135          81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVE-QGQKLAKE-IGAHCYVECSAL  157 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHH-HHHHHHHH-cCCCEEEEecCC
Confidence            999999998876555554433 578999999999998643221111111111111000 00000000 123468999999


Q ss_pred             cCCChhhHHHhhhhhc
Q 029437          177 RKMGYGDGFKWLSQYI  192 (193)
Q Consensus       177 ~g~gv~el~~~i~~~~  192 (193)
                      +|.|++++|+.+.+++
T Consensus       158 ~~~gi~~~f~~~~~~~  173 (174)
T cd04135         158 TQKGLKTVFDEAILAI  173 (174)
T ss_pred             cCCCHHHHHHHHHHHh
Confidence            9999999999998764

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04123 Rab21 Rab21 subfamily

Probab=99.96  E-value=5e-27  Score=162.24  Aligned_cols=154  Identities=22%  Similarity=0.326  Sum_probs=117.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCc--ceeEEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYP--TSEELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~--~~~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      +||+++|++|+|||||++++.+..+... .++...  ....+..  ....+.+||+||+..+......+++.+|++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            5899999999999999999999887643 233322  2223333  3357999999999999888888899999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      |++++++++....|+..+..... .++|+++++||+|+...  ...++.......                 ....++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~  142 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAKS-----------------VGAKHFET  142 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHHH-----------------cCCEEEEE
Confidence            99999999888888777754332 38999999999999732  223333222211                 12457899


Q ss_pred             eeecCCChhhHHHhhhhhc
Q 029437          174 SIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~~  192 (193)
                      ||++|.|+++++++|.+.+
T Consensus       143 s~~~~~gi~~~~~~l~~~~  161 (162)
T cd04123         143 SAKTGKGIEELFLSLAKRM  161 (162)
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998764

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.3e-27  Score=155.39  Aligned_cols=154  Identities=22%  Similarity=0.339  Sum_probs=124.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEE--eCCEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELS--IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      ...+|++++|++.+|||||+.++.+..|.+ ...|.+..  ..++.  ...+++++|||+|+++++.+...++++++++|
T Consensus        19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi   98 (193)
T KOG0093|consen   19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI   98 (193)
T ss_pred             cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence            456799999999999999999999999876 34455543  22221  13489999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHH---HHHHhhCCCccccCCCccccCCCCCcc
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEE---ELRYHLGLSNFTTGKGKVNLADSNVRP  167 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (193)
                      +++|+++.++|..+..|.-.+ ....-.+.|+|+++||+|+..+  .+.+   .+.++++..                  
T Consensus        99 LmyDitNeeSf~svqdw~tqI-ktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfe------------------  159 (193)
T KOG0093|consen   99 LMYDITNEESFNSVQDWITQI-KTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFE------------------  159 (193)
T ss_pred             EEEecCCHHHHHHHHHHHHHh-eeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChH------------------
Confidence            999999999999998887776 3344469999999999999732  2222   256666654                  


Q ss_pred             eEEEEeeeecCCChhhHHHhhhhhc
Q 029437          168 LEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       168 ~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                        +|++||+.+.|++++|+.+...|
T Consensus       160 --fFEtSaK~NinVk~~Fe~lv~~I  182 (193)
T KOG0093|consen  160 --FFETSAKENINVKQVFERLVDII  182 (193)
T ss_pred             --HhhhcccccccHHHHHHHHHHHH
Confidence              48999999999999999987764

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.95  E-value=1.6e-27  Score=154.07  Aligned_cols=175  Identities=35%  Similarity=0.578  Sum_probs=154.9

Q ss_pred             HHHHHHHhhCC-CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCC-EEEEEEEcCChhhhHhhHHh
Q 029437            6 WFYGVLASLGL-WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGK-IKFKAFDLGGHQIARRVWKD   83 (193)
Q Consensus         6 ~~~~~~~~~~~-~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~~~~~~~~   83 (193)
                      ||...+...+. ..+++||++.|-.++||||+++++.+.+.+...||.+.+...+.+.+ ..+++||.+|+...+..+..
T Consensus         2 gl~til~~~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsN   81 (185)
T KOG0074|consen    2 GLETILCCCKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSN   81 (185)
T ss_pred             cHHHHHHHhcCCCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhh
Confidence            34444444443 57899999999999999999999999998889999999999999876 89999999999999999999


Q ss_pred             hcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCC
Q 029437           84 YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADS  163 (193)
Q Consensus        84 ~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (193)
                      ++.+.|.+|||+|++|+..|+++-+.+.++++......+|+.+..||.|+..+...+++...+++..+            
T Consensus        82 Yyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~l------------  149 (185)
T KOG0074|consen   82 YYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGL------------  149 (185)
T ss_pred             hhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhh------------
Confidence            99999999999999999999999999999998888899999999999999988888888888876662            


Q ss_pred             CCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          164 NVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ..+.+.+.+|||.+++|+..-.+|+.+..
T Consensus       150 rdRswhIq~csals~eg~~dg~~wv~sn~  178 (185)
T KOG0074|consen  150 RDRSWHIQECSALSLEGSTDGSDWVQSNP  178 (185)
T ss_pred             hhceEEeeeCccccccCccCcchhhhcCC
Confidence            22567899999999999999999988654

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.95  E-value=1.5e-27  Score=165.75  Aligned_cols=154  Identities=21%  Similarity=0.267  Sum_probs=111.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCC-cceeEEEe--CCEEEEEEEcCChhhh-HhhHHhhcccCCEEEEEEE
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQH-QPTQY-PTSEELSI--GKIKFKAFDLGGHQIA-RRVWKDYYAKVDAVVYLVD   96 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~-~~~~~~~~--~~~~~~~~D~~G~~~~-~~~~~~~~~~~d~vl~v~d   96 (193)
                      +|+++|++|+|||||++++....+... .++.. .....+..  ..+.+.+||+||+... ......+++.+|++++|+|
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d   80 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS   80 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence            589999999999999999998777543 34432 22223333  3467899999999853 3455667889999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCC-CCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           97 AYDKERFAESKKELDALLSDEA-LANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~-~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      ++++++++.+..|+..+..... ..+.|+++++||+|+...  ...++...... ..                ...+++|
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~~----------------~~~~~e~  143 (165)
T cd04146          81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLAS-EL----------------GCLFFEV  143 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHH-Hc----------------CCEEEEe
Confidence            9999999999888776654332 458999999999998632  23222211111 11                1468999


Q ss_pred             eeecCC-ChhhHHHhhhhhc
Q 029437          174 SIVRKM-GYGDGFKWLSQYI  192 (193)
Q Consensus       174 Sa~~g~-gv~el~~~i~~~~  192 (193)
                      ||++|. |++++|+.|.+.+
T Consensus       144 Sa~~~~~~v~~~f~~l~~~~  163 (165)
T cd04146         144 SAAEDYDGVHSVFHELCREV  163 (165)
T ss_pred             CCCCCchhHHHHHHHHHHHH
Confidence            999995 9999999998765

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04114 Rab30 Rab30 subfamily

Probab=99.95  E-value=5.8e-27  Score=163.25  Aligned_cols=159  Identities=19%  Similarity=0.212  Sum_probs=119.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      .....+|+++|++|||||||++++....+.. ..++.+.  ....+.+.+  ..+.+||+||+..+......++..+|++
T Consensus         4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   83 (169)
T cd04114           4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL   83 (169)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            3456899999999999999999998776654 3344432  233344544  6789999999999998888899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC-HHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      ++|+|++++.+++.+..|+..+.. ....+.|+++++||+|+..... ..+..+.+...                ....+
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~----------------~~~~~  146 (169)
T cd04114          84 ILTYDITCEESFRCLPEWLREIEQ-YANNKVITILVGNKIDLAERREVSQQRAEEFSDA----------------QDMYY  146 (169)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEECcccccccccCHHHHHHHHHH----------------cCCeE
Confidence            999999999999888877765532 2335799999999999864322 12222222211                12568


Q ss_pred             EEeeeecCCChhhHHHhhhhhc
Q 029437          171 FMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       171 ~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++|||++|.|++++|++|.+.+
T Consensus       147 ~~~Sa~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         147 LETSAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998753

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.95  E-value=2.7e-27  Score=163.84  Aligned_cols=153  Identities=26%  Similarity=0.364  Sum_probs=121.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD   96 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d   96 (193)
                      ||+++|++|+|||||++++.+..+.. ..+|.+...  ..+..+  .+.+.+||++|++.+..+....+..+|++++|+|
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999988776 345654433  333443  4679999999999999888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEee
Q 029437           97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS  174 (193)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  174 (193)
                      .+++++++.+..|+..+..... .+.|+++++||.|+..  ..+.++...... ..               + ..+++||
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~-~~---------------~-~~~~e~S  142 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAK-EL---------------G-VPYFEVS  142 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHH-HT---------------T-SEEEEEB
T ss_pred             cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHH-Hh---------------C-CEEEEEE
Confidence            9999999999988888754433 5799999999999974  444443222211 11               2 5789999


Q ss_pred             eecCCChhhHHHhhhhhc
Q 029437          175 IVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       175 a~~g~gv~el~~~i~~~~  192 (193)
                      |+++.|+.++|..+.+.+
T Consensus       143 a~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen  143 AKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTTTTTHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999999998865

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.95  E-value=1.3e-27  Score=167.40  Aligned_cols=164  Identities=18%  Similarity=0.271  Sum_probs=113.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce-eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECC
Q 029437           23 ILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTS-EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAY   98 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~   98 (193)
                      |+|+|++|+|||||++++.+..+... .++..... ..+..+  .+.+.+|||||++.+..+....++.+|++++|+|++
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~   80 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD   80 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence            58999999999999999999887653 34433222 233333  357899999999999888888899999999999999


Q ss_pred             ChhhHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCCCCCCCC-HHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeee
Q 029437           99 DKERFAESKK-ELDALLSDEALANVPFLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIV  176 (193)
Q Consensus        99 ~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  176 (193)
                      ++++++.+.. |+..+.. . .++.|+++++||+|+..... .+++...-. ...... ....+++. .+...+++|||+
T Consensus        81 ~~~s~~~~~~~~~~~i~~-~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~v~~~-~~~~~~~~-~~~~~~~e~Sa~  155 (174)
T smart00174       81 SPASFENVKEKWYPEVKH-F-CPNTPIILVGTKLDLREDKSTLRELSKQKQ-EPVTYE-QGEALAKR-IGAVKYLECSAL  155 (174)
T ss_pred             CHHHHHHHHHHHHHHHHh-h-CCCCCEEEEecChhhhhChhhhhhhhcccC-CCccHH-HHHHHHHH-cCCcEEEEecCC
Confidence            9999998875 5554433 2 35899999999999974221 111111000 000000 00001111 122478999999


Q ss_pred             cCCChhhHHHhhhhh
Q 029437          177 RKMGYGDGFKWLSQY  191 (193)
Q Consensus       177 ~g~gv~el~~~i~~~  191 (193)
                      +|.|++++|+.|.+.
T Consensus       156 ~~~~v~~lf~~l~~~  170 (174)
T smart00174      156 TQEGVREVFEEAIRA  170 (174)
T ss_pred             CCCCHHHHHHHHHHH
Confidence            999999999998865

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.95  E-value=2.9e-27  Score=168.05  Aligned_cols=166  Identities=18%  Similarity=0.233  Sum_probs=107.4

Q ss_pred             ccEEEEEcCCCCCHHHHHH-HHhcCCcc------ccCCCCCc-c--ee----------EEEeCCEEEEEEEcCChhhhHh
Q 029437           20 EAKILFLGLDNAGKTTLLH-MLKDERLV------QHQPTQYP-T--SE----------ELSIGKIKFKAFDLGGHQIARR   79 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~-~l~~~~~~------~~~~t~~~-~--~~----------~~~~~~~~~~~~D~~G~~~~~~   79 (193)
                      .+||+++|++|+|||||+. ++.+..+.      ...||.+. .  ..          .+....+.+.+|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999995 56554432      23466642 1  11          2233458899999999875  3


Q ss_pred             hHHhhcccCCEEEEEEECCChhhHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHH------HHhhCCCccc
Q 029437           80 VWKDYYAKVDAVVYLVDAYDKERFAESKK-ELDALLSDEALANVPFLVLGNKIDIPYAASEEEL------RYHLGLSNFT  152 (193)
Q Consensus        80 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~------~~~~~~~~~~  152 (193)
                      +...+++++|++++|+|++++.+++++.. |+..+...  .++.|+++|+||+|+......+..      ..........
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V  157 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF--CPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL  157 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence            44567899999999999999999999975 55555322  257899999999998632100000      0000000000


Q ss_pred             cCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          153 TGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                      .......+++.  ..+.+++|||++|.||+++|+.+.++
T Consensus       158 ~~~e~~~~a~~--~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         158 PPETGRAVAKE--LGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             CHHHHHHHHHH--hCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            00000011111  23579999999999999999999865

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd00157 Rho Rho (Ras homology) family

Probab=99.95  E-value=1.8e-27  Score=166.09  Aligned_cols=154  Identities=19%  Similarity=0.263  Sum_probs=113.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-e--EEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-E--ELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD   96 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~--~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d   96 (193)
                      +||+++|++|||||||++++.+..+.. ..++..... .  ........+.+||+||+..+.......++.+|++++|+|
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS   80 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence            589999999999999999999988743 334332211 2  222335689999999999887777778889999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH------------HHHhhCCCccccCCCccccCCCC
Q 029437           97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE------------LRYHLGLSNFTTGKGKVNLADSN  164 (193)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~  164 (193)
                      ++++.++......|...+.... .+.|+++++||+|+........            ....+....              
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------------  145 (171)
T cd00157          81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEI--------------  145 (171)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHh--------------
Confidence            9999998887766555544332 4899999999999975433211            111111011              


Q ss_pred             CcceEEEEeeeecCCChhhHHHhhhh
Q 029437          165 VRPLEVFMCSIVRKMGYGDGFKWLSQ  190 (193)
Q Consensus       165 ~~~~~~~~~Sa~~g~gv~el~~~i~~  190 (193)
                       +...++++||++|.|+++++++|.+
T Consensus       146 -~~~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         146 -GAIGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             -CCeEEEEeecCCCCCHHHHHHHHhh
Confidence             2347999999999999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd00876 Ras Ras family

Probab=99.95  E-value=1e-26  Score=160.40  Aligned_cols=154  Identities=20%  Similarity=0.292  Sum_probs=119.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCC-cceeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQH-QPTQY-PTSEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA   97 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~-~~~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~   97 (193)
                      ||+++|++|||||||++++....+... .++.. .........  ...+.+||+||+..+.......++.+|++++|+|+
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   80 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI   80 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence            689999999999999999998776543 33333 223334444  46889999999999988888899999999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437           98 YDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI  175 (193)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  175 (193)
                      ++++++.+...++..+.........|+++++||+|+...  ...++...... ..                ..+++++||
T Consensus        81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~----------------~~~~~~~S~  143 (160)
T cd00876          81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-EW----------------GCPFIETSA  143 (160)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-Hc----------------CCcEEEecc
Confidence            999999999999988877655568999999999999742  22222222211 11                146899999


Q ss_pred             ecCCChhhHHHhhhhhc
Q 029437          176 VRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       176 ~~g~gv~el~~~i~~~~  192 (193)
                      ++|.|+++++++|.+.+
T Consensus       144 ~~~~~i~~l~~~l~~~i  160 (160)
T cd00876         144 KDNINIDEVFKLLVREI  160 (160)
T ss_pred             CCCCCHHHHHHHHHhhC
Confidence            99999999999998764

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.95  E-value=9.7e-28  Score=156.19  Aligned_cols=153  Identities=22%  Similarity=0.363  Sum_probs=124.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCC-CCC--cceeEEE--eCCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQP-TQY--PTSEELS--IGKIKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-t~~--~~~~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      +.+-++.+|+|++|+|||||+.++....|...+. |++  ....+++  ...+++.+||++|+++++.+...++++.+++
T Consensus         5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv   84 (198)
T KOG0079|consen    5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV   84 (198)
T ss_pred             HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence            4456788999999999999999999998887543 443  3344444  4558999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHH---HHHhhCCCccccCCCccccCCCCCc
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEE---LRYHLGLSNFTTGKGKVNLADSNVR  166 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  166 (193)
                      ++|+|+++.+||.+..+|+.++-+  +.+.+|-++|+||.|.+.  .+..++   ...+++                   
T Consensus        85 ~vVYDVTn~ESF~Nv~rWLeei~~--ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mg-------------------  143 (198)
T KOG0079|consen   85 IVVYDVTNGESFNNVKRWLEEIRN--NCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMG-------------------  143 (198)
T ss_pred             EEEEECcchhhhHhHHHHHHHHHh--cCccccceecccCCCCccceeeehHHHHHHHHhcC-------------------
Confidence            999999999999999999999943  456899999999999982  223222   333333                   


Q ss_pred             ceEEEEeeeecCCChhhHHHhhhhh
Q 029437          167 PLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       167 ~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                       +.+|++||++.+|+++-|..|-+.
T Consensus       144 -ie~FETSaKe~~NvE~mF~cit~q  167 (198)
T KOG0079|consen  144 -IELFETSAKENENVEAMFHCITKQ  167 (198)
T ss_pred             -chheehhhhhcccchHHHHHHHHH
Confidence             456999999999999999888664

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.95  E-value=1.8e-26  Score=162.47  Aligned_cols=155  Identities=21%  Similarity=0.237  Sum_probs=121.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc-ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP-TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD   96 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d   96 (193)
                      .||+++|++|+|||||++++....+.. ..|+... ....+...+  ..+.+||+||+.++......++..++++++|+|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS   81 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence            589999999999999999999888754 4444432 233444443  567999999999998888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEee
Q 029437           97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS  174 (193)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  174 (193)
                      +++..+++.+..++..+++.....+.|+++++||+|+..  .....+...... .                ....++++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~~~~~S  144 (180)
T cd04137          82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAE-S----------------WGAAFLESS  144 (180)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHH-H----------------cCCeEEEEe
Confidence            999999999999999988765557899999999999863  222222221111 1                124689999


Q ss_pred             eecCCChhhHHHhhhhhc
Q 029437          175 IVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       175 a~~g~gv~el~~~i~~~~  192 (193)
                      |++|.|+.+++++|.+.+
T Consensus       145 a~~~~gv~~l~~~l~~~~  162 (180)
T cd04137         145 ARENENVEEAFELLIEEI  162 (180)
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999999998764

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.95  E-value=5.4e-27  Score=164.33  Aligned_cols=168  Identities=17%  Similarity=0.310  Sum_probs=116.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD   96 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d   96 (193)
                      .||+++|++|||||||++++....+.. +.||..... ..+..+  ...+.+|||+|++.+.......+.++|++++|+|
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~   81 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   81 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence            589999999999999999999988765 445554432 334443  3678999999999988887778899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHH-HHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437           97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEE-ELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI  175 (193)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  175 (193)
                      ++++++++.+...|...+.. ...+.|+++++||+|+....... ++...... .... .....++. ......+++|||
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~-~v~~-~~~~~~~~-~~~~~~~~~~Sa  157 (175)
T cd01870          82 IDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQE-PVKP-EEGRDMAN-KIGAFGYMECSA  157 (175)
T ss_pred             CCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEeeChhcccChhhhhhhhhccCC-CccH-HHHHHHHH-HcCCcEEEEecc
Confidence            99999998886544444332 23589999999999986432211 11110000 0000 00000000 012347899999


Q ss_pred             ecCCChhhHHHhhhhhc
Q 029437          176 VRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       176 ~~g~gv~el~~~i~~~~  192 (193)
                      ++|.|++++|++|.++.
T Consensus       158 ~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         158 KTKEGVREVFEMATRAA  174 (175)
T ss_pred             ccCcCHHHHHHHHHHHh
Confidence            99999999999998754

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.7e-27  Score=163.09  Aligned_cols=159  Identities=18%  Similarity=0.234  Sum_probs=128.5

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce----eEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCE
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS----EELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDA   90 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~----~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~   90 (193)
                      ..++-+||+++|++|+|||-|+.++...+|.. ..+|++...    ..++.+.++.++|||+|+++|+.....+++.+.+
T Consensus        10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG   89 (222)
T KOG0087|consen   10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG   89 (222)
T ss_pred             ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence            35678999999999999999999999999986 445665432    3344456889999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC--CCCCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437           91 VVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP--YAASEEELRYHLGLSNFTTGKGKVNLADSNVRPL  168 (193)
Q Consensus        91 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (193)
                      .++|+|++...+|+++.+|+.++..+. .+++++++|+||+||.  +++..++-..--+.                 ...
T Consensus        90 AllVYDITr~~Tfenv~rWL~ELRdha-d~nivimLvGNK~DL~~lraV~te~~k~~Ae~-----------------~~l  151 (222)
T KOG0087|consen   90 ALLVYDITRRQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEK-----------------EGL  151 (222)
T ss_pred             eEEEEechhHHHHHHHHHHHHHHHhcC-CCCeEEEEeecchhhhhccccchhhhHhHHHh-----------------cCc
Confidence            999999999999999999999997654 4699999999999997  34443332221111                 124


Q ss_pred             EEEEeeeecCCChhhHHHhhhhhc
Q 029437          169 EVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       169 ~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .++++||..+.|+++.|+.+...|
T Consensus       152 ~f~EtSAl~~tNVe~aF~~~l~~I  175 (222)
T KOG0087|consen  152 FFLETSALDATNVEKAFERVLTEI  175 (222)
T ss_pred             eEEEecccccccHHHHHHHHHHHH
Confidence            568999999999999998877654

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.95  E-value=8e-27  Score=163.28  Aligned_cols=165  Identities=15%  Similarity=0.214  Sum_probs=112.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCC-cceeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQY-PTSEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD   96 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~-~~~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d   96 (193)
                      +|++++|++|+|||||++++.+..+... .+|.. .....+..+  ...+.+||+||++.+..++..+++++|++++|+|
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d   80 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS   80 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence            5899999999999999999998887653 33432 122233343  3678999999999998888888899999999999


Q ss_pred             CCChhhHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH-HHHHHhhCCCccccCCCccccCCCCCcceEEEEee
Q 029437           97 AYDKERFAESKK-ELDALLSDEALANVPFLVLGNKIDIPYAASE-EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS  174 (193)
Q Consensus        97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  174 (193)
                      ++++++++.+.. |+..+..  ..++.|+++++||+|+...... ..+........ .. .....+++ ..+...+++||
T Consensus        81 ~~~~~sf~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v-~~-~~~~~~a~-~~~~~~~~e~S  155 (173)
T cd04130          81 VVNPSSFQNISEKWIPEIRK--HNPKAPIILVGTQADLRTDVNVLIQLARYGEKPV-SQ-SRAKALAE-KIGACEYIECS  155 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHh--hCCCCCEEEEeeChhhccChhHHHHHhhcCCCCc-CH-HHHHHHHH-HhCCCeEEEEe
Confidence            999999988864 5544532  2357999999999998632210 00000000000 00 00000000 00224799999


Q ss_pred             eecCCChhhHHHhhhh
Q 029437          175 IVRKMGYGDGFKWLSQ  190 (193)
Q Consensus       175 a~~g~gv~el~~~i~~  190 (193)
                      |++|.|++++|+.+.-
T Consensus       156 a~~~~~v~~lf~~~~~  171 (173)
T cd04130         156 ALTQKNLKEVFDTAIL  171 (173)
T ss_pred             CCCCCCHHHHHHHHHh
Confidence            9999999999998753

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.95  E-value=8.2e-27  Score=154.31  Aligned_cols=158  Identities=20%  Similarity=0.282  Sum_probs=124.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-----eEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-----EELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-----~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      ...++++++|++-+|||||++.++.++|+. ..||++..-     +--....+++++|||+|+++++++...++++.-++
T Consensus         6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv   85 (213)
T KOG0091|consen    6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV   85 (213)
T ss_pred             EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence            356899999999999999999999999987 457776532     11223458999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcE-EEEEeCCCCC--CCCCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPF-LVLGNKIDIP--YAASEEELRYHLGLSNFTTGKGKVNLADSNVRPL  168 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pv-iiv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (193)
                      ++|+|.++.++|+++..|+.+..-....|..++ .+|++|+|+.  +.+..+|..+--.                 ....
T Consensus        86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa-----------------~hgM  148 (213)
T KOG0091|consen   86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAA-----------------SHGM  148 (213)
T ss_pred             EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHH-----------------hcCc
Confidence            999999999999999999998754444455554 6999999998  3444444222111                 0235


Q ss_pred             EEEEeeeecCCChhhHHHhhhhhc
Q 029437          169 EVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       169 ~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .++++||++|.||+|.|.-|.+.+
T Consensus       149 ~FVETSak~g~NVeEAF~mlaqeI  172 (213)
T KOG0091|consen  149 AFVETSAKNGCNVEEAFDMLAQEI  172 (213)
T ss_pred             eEEEecccCCCcHHHHHHHHHHHH
Confidence            679999999999999998776543

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=8.4e-28  Score=156.83  Aligned_cols=158  Identities=19%  Similarity=0.203  Sum_probs=125.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEE--EeCCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEEL--SIGKIKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      ++.-+||+++|+.|+|||.|.++++.+-|++ ...|++.  -..++  ..+++++++|||+|++++++..+.+++.++++
T Consensus         4 ykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahal   83 (213)
T KOG0095|consen    4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (213)
T ss_pred             cceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceE
Confidence            4566899999999999999999999988876 4456554  33444  45568999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      ++|+|++...+|+-+-+|+.++-. ....++--|+|+||+|+.+. .-++++-+++....                ..-+
T Consensus        84 ilvydiscqpsfdclpewlreie~-yan~kvlkilvgnk~d~~drrevp~qigeefs~~q----------------dmyf  146 (213)
T KOG0095|consen   84 ILVYDISCQPSFDCLPEWLREIEQ-YANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQ----------------DMYF  146 (213)
T ss_pred             EEEEecccCcchhhhHHHHHHHHH-HhhcceEEEeeccccchhhhhhhhHHHHHHHHHhh----------------hhhh
Confidence            999999999999999999999843 44467778999999999733 23333433333211                1236


Q ss_pred             EEeeeecCCChhhHHHhhhhh
Q 029437          171 FMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       171 ~~~Sa~~g~gv~el~~~i~~~  191 (193)
                      +++||++..|++.+|..+.-.
T Consensus       147 letsakea~nve~lf~~~a~r  167 (213)
T KOG0095|consen  147 LETSAKEADNVEKLFLDLACR  167 (213)
T ss_pred             hhhcccchhhHHHHHHHHHHH
Confidence            799999999999999887543

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.7e-26  Score=151.27  Aligned_cols=156  Identities=19%  Similarity=0.236  Sum_probs=122.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc----eeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPT----SEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~----~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      ++.-+|++++|++|+|||.|++++....+... ..|++..    ...+-.+.+++++|||+|++++++....+++.+.+.
T Consensus         6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGA   85 (214)
T KOG0086|consen    6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA   85 (214)
T ss_pred             hhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence            55668999999999999999999998877643 2344432    233344568999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++|+|+++.++|..+..|+.+... ...+++-+++++||.|+.++.  ...|...--.  .               +...
T Consensus        86 lLVYD~TsrdsfnaLtnWL~DaR~-lAs~nIvviL~GnKkDL~~~R~VtflEAs~Faq--E---------------nel~  147 (214)
T KOG0086|consen   86 LLVYDITSRDSFNALTNWLTDART-LASPNIVVILCGNKKDLDPEREVTFLEASRFAQ--E---------------NELM  147 (214)
T ss_pred             EEEEeccchhhHHHHHHHHHHHHh-hCCCcEEEEEeCChhhcChhhhhhHHHHHhhhc--c---------------ccee
Confidence            999999999999999999998843 455789999999999997432  2222221111  0               2356


Q ss_pred             EEEeeeecCCChhhHHHhhhh
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQ  190 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~  190 (193)
                      ++++||++|+|++|.|-...+
T Consensus       148 flETSa~TGeNVEEaFl~c~~  168 (214)
T KOG0086|consen  148 FLETSALTGENVEEAFLKCAR  168 (214)
T ss_pred             eeeecccccccHHHHHHHHHH
Confidence            889999999999998865443

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.94  E-value=7.9e-26  Score=157.40  Aligned_cols=153  Identities=17%  Similarity=0.182  Sum_probs=104.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcccc---CCCCCcceeEEEeCCEEEEEEEcCChhhh---------HhhHHhhcccC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQH---QPTQYPTSEELSIGKIKFKAFDLGGHQIA---------RRVWKDYYAKV   88 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~D~~G~~~~---------~~~~~~~~~~~   88 (193)
                      .+|+++|++|+|||||++++.+..+...   .+|.........+++..+.+|||||....         ..........+
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR   80 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence            3799999999999999999998876421   22445555566667789999999997321         01111112336


Q ss_pred             CEEEEEEECCChhhH--HHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCc
Q 029437           89 DAVVYLVDAYDKERF--AESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVR  166 (193)
Q Consensus        89 d~vl~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (193)
                      |++++|+|++++.++  .....++..+...  ..+.|+++++||+|+.......+..+...  .               .
T Consensus        81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~--~---------------~  141 (168)
T cd01897          81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSEIEEEEE--L---------------E  141 (168)
T ss_pred             CcEEEEEeCCcccccchHHHHHHHHHHHhh--cCcCCeEEEEEccccCchhhHHHHHHhhh--h---------------c
Confidence            899999999887543  4444555554322  24899999999999974333222111110  0               2


Q ss_pred             ceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          167 PLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       167 ~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ..++++|||++|.|+++++++|.+.+
T Consensus       142 ~~~~~~~Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         142 GEEVLKISTLTEEGVDEVKNKACELL  167 (168)
T ss_pred             cCceEEEEecccCCHHHHHHHHHHHh
Confidence            35789999999999999999998865

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.94  E-value=2.2e-25  Score=161.14  Aligned_cols=157  Identities=19%  Similarity=0.317  Sum_probs=121.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEe----CCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELSI----GKIKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      ....+||+++|++|||||||++++..+.+.. ..+|.+.......+    +.+.+.+||++|+..+..++..++..++++
T Consensus         6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~   85 (215)
T PTZ00132          6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA   85 (215)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence            4567999999999999999998887777653 55677665544433    458899999999999988888888999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      ++|+|+++..++..+..|+..+...  ..+.|+++++||+|+.......+......  .               ....++
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~--~---------------~~~~~~  146 (215)
T PTZ00132         86 IIMFDVTSRITYKNVPNWHRDIVRV--CENIPIVLVGNKVDVKDRQVKARQITFHR--K---------------KNLQYY  146 (215)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccCccccCCHHHHHHHH--H---------------cCCEEE
Confidence            9999999999999998888877543  25799999999999863221111111111  0               224689


Q ss_pred             EeeeecCCChhhHHHhhhhhc
Q 029437          172 MCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       172 ~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++||++|.|+++.|.+|.+.+
T Consensus       147 e~Sa~~~~~v~~~f~~ia~~l  167 (215)
T PTZ00132        147 DISAKSNYNFEKPFLWLARRL  167 (215)
T ss_pred             EEeCCCCCCHHHHHHHHHHHH
Confidence            999999999999999998764

>cd01898 Obg Obg subfamily

Probab=99.94  E-value=8.6e-26  Score=157.44  Aligned_cols=156  Identities=21%  Similarity=0.197  Sum_probs=109.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCCE-EEEEEEcCChhh----hHhhHHh---hcccCCE
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGKI-KFKAFDLGGHQI----ARRVWKD---YYAKVDA   90 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~-~~~~~D~~G~~~----~~~~~~~---~~~~~d~   90 (193)
                      +|+++|.+|||||||++++.+.+...   ..+|..+....+.+.+. .+.+|||||...    .+.+...   .+..+|+
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~   81 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL   81 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence            68999999999999999998765421   12355566666666665 999999999632    1112222   2456999


Q ss_pred             EEEEEECCCh-hhHHHHHHHHHHHHcCC-CCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437           91 VVYLVDAYDK-ERFAESKKELDALLSDE-ALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPL  168 (193)
Q Consensus        91 vl~v~d~~~~-~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (193)
                      +++|+|++++ ++++....+...+.... ...+.|+++++||+|+.+.....+....+....               ...
T Consensus        82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~---------------~~~  146 (170)
T cd01898          82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKEL---------------WGK  146 (170)
T ss_pred             EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhC---------------CCC
Confidence            9999999998 67777777766664332 124789999999999975443333222221110               124


Q ss_pred             EEEEeeeecCCChhhHHHhhhhhc
Q 029437          169 EVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       169 ~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .++++||++|.|+++++++|.+.+
T Consensus       147 ~~~~~Sa~~~~gi~~l~~~i~~~~  170 (170)
T cd01898         147 PVFPISALTGEGLDELLRKLAELL  170 (170)
T ss_pred             CEEEEecCCCCCHHHHHHHHHhhC
Confidence            689999999999999999998753

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04129 Rho2 Rho2 subfamily

Probab=99.94  E-value=6.3e-26  Score=160.64  Aligned_cols=167  Identities=17%  Similarity=0.248  Sum_probs=111.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD   96 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d   96 (193)
                      .||+|+|++|+|||||++++....+.+ ..+|.... ...+...  ...+.+||++|+..+.......+..+|++++|+|
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~   81 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA   81 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence            589999999999999999998777654 23343322 2233333  3568999999998887766667789999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeee
Q 029437           97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIV  176 (193)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  176 (193)
                      ++++++++.+...|...+.. ..++.|+++++||+|+.......+.  ........... ...+++ ..+...+++|||+
T Consensus        82 i~~~~s~~~~~~~~~~~i~~-~~~~~piilvgnK~Dl~~~~~~~~~--~~~~~~~~~~~-~~~~~~-~~~~~~~~e~Sa~  156 (187)
T cd04129          82 VDTPDSLENVRTKWIEEVRR-YCPNVPVILVGLKKDLRQDAVAKEE--YRTQRFVPIQQ-GKRVAK-EIGAKKYMECSAL  156 (187)
T ss_pred             CCCHHHHHHHHHHHHHHHHH-hCCCCCEEEEeeChhhhhCcccccc--cccCCcCCHHH-HHHHHH-HhCCcEEEEccCC
Confidence            99999999987544444332 2357999999999998532111000  00000000000 000000 0123478999999


Q ss_pred             cCCChhhHHHhhhhhc
Q 029437          177 RKMGYGDGFKWLSQYI  192 (193)
Q Consensus       177 ~g~gv~el~~~i~~~~  192 (193)
                      +|.|++++|+++.+.+
T Consensus       157 ~~~~v~~~f~~l~~~~  172 (187)
T cd04129         157 TGEGVDDVFEAATRAA  172 (187)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999998653

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.7e-26  Score=153.33  Aligned_cols=165  Identities=33%  Similarity=0.557  Sum_probs=140.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC--------ccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccC
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDER--------LVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKV   88 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~--------~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~   88 (193)
                      .+..+.++|+|..+||||||+.+....-        ...-.+|++.+.+++..++..+.+||.+|++..++++..++..+
T Consensus        14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~   93 (197)
T KOG0076|consen   14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLA   93 (197)
T ss_pred             hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHh
Confidence            6778899999999999999998874322        12345799999999999999999999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437           89 DAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPL  168 (193)
Q Consensus        89 d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (193)
                      |++++++|+++++.++.....++.+.......++|+++.+||.|+.......++...++....        +   ..+..
T Consensus        94 H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~--------~---~~rd~  162 (197)
T KOG0076|consen   94 HGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAEL--------I---PRRDN  162 (197)
T ss_pred             ceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhh--------c---CCccC
Confidence            999999999999999888888888876666789999999999999988888887777764110        0   11446


Q ss_pred             EEEEeeeecCCChhhHHHhhhhhc
Q 029437          169 EVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       169 ~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .+.++||.+|+||+|..+|+++.+
T Consensus       163 ~~~pvSal~gegv~egi~w~v~~~  186 (197)
T KOG0076|consen  163 PFQPVSALTGEGVKEGIEWLVKKL  186 (197)
T ss_pred             ccccchhhhcccHHHHHHHHHHHH
Confidence            789999999999999999998865

>cd01878 HflX HflX subfamily

Probab=99.93  E-value=1e-24  Score=156.44  Aligned_cols=153  Identities=20%  Similarity=0.235  Sum_probs=109.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCCE-EEEEEEcCChhh---------hHhhHHhh
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGKI-KFKAFDLGGHQI---------ARRVWKDY   84 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~-~~~~~D~~G~~~---------~~~~~~~~   84 (193)
                      ...++|+|+|++|||||||++++.+..+..   ..+|..+....+.+.+. .+.+|||||...         +.... ..
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~  117 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EE  117 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence            445899999999999999999999886432   23455566666666554 899999999722         22222 23


Q ss_pred             cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCC
Q 029437           85 YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSN  164 (193)
Q Consensus        85 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (193)
                      +..+|++++|+|++++.+......+.. .+......+.|+++|+||+|+.+.....   ....  .              
T Consensus       118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~-~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~--~--------------  177 (204)
T cd01878         118 VAEADLLLHVVDASDPDYEEQIETVEK-VLKELGAEDIPMILVLNKIDLLDDEELE---ERLE--A--------------  177 (204)
T ss_pred             HhcCCeEEEEEECCCCChhhHHHHHHH-HHHHcCcCCCCEEEEEEccccCChHHHH---HHhh--c--------------
Confidence            568999999999998877665544333 3333344579999999999997432221   1111  0              


Q ss_pred             CcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          165 VRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                       ...+++++||++|.|+++++++|.+.+
T Consensus       178 -~~~~~~~~Sa~~~~gi~~l~~~L~~~~  204 (204)
T cd01878         178 -GRPDAVFISAKTGEGLDELLEAIEELL  204 (204)
T ss_pred             -CCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence             235689999999999999999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01890 LepA LepA subfamily

Probab=99.93  E-value=9.9e-25  Score=153.39  Aligned_cols=149  Identities=22%  Similarity=0.225  Sum_probs=104.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC-------ccc-cCC----------CCCcceeEEE-----eCCEEEEEEEcCChhhhH
Q 029437           22 KILFLGLDNAGKTTLLHMLKDER-------LVQ-HQP----------TQYPTSEELS-----IGKIKFKAFDLGGHQIAR   78 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~-------~~~-~~~----------t~~~~~~~~~-----~~~~~~~~~D~~G~~~~~   78 (193)
                      +|+++|++|+|||||++++.+..       +.. ..+          +.......+.     ..+..+.+|||||+..+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998642       111 111          1111122232     246789999999999998


Q ss_pred             hhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH---HHHHHhhCCCccccCC
Q 029437           79 RVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE---EELRYHLGLSNFTTGK  155 (193)
Q Consensus        79 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~  155 (193)
                      .....++..+|++++|+|+++..+.+....+. ....    .++|+++++||+|+......   .++.+.++..      
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~-~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~------  150 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFY-LALE----NNLEIIPVINKIDLPSADPERVKQQIEDVLGLD------  150 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHH-HHHH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCC------
Confidence            88888899999999999998875554443333 2222    47899999999998643211   1233333221      


Q ss_pred             CccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          156 GKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                                 ...++++||++|.|+++++++|.+.+
T Consensus       151 -----------~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         151 -----------PSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             -----------cccEEEeeccCCCCHHHHHHHHHhhC
Confidence                       13589999999999999999998765

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.93  E-value=4e-24  Score=152.99  Aligned_cols=169  Identities=20%  Similarity=0.286  Sum_probs=123.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEe----CCEEEEEEEcCChhhhHhhHHhhcccC-CEEEEEEE
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSI----GKIKFKAFDLGGHQIARRVWKDYYAKV-DAVVYLVD   96 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~D~~G~~~~~~~~~~~~~~~-d~vl~v~d   96 (193)
                      +|+++|++|||||||++++....+....++...+......    .+..+.+||+||+.+++..+..+++.+ +++|+|+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            6899999999999999999998877665554444444333    357899999999999998888888888 99999999


Q ss_pred             CCCh-hhHHHHHHHHHHHHcCC--CCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCcc----cc--------CCCc--cc
Q 029437           97 AYDK-ERFAESKKELDALLSDE--ALANVPFLVLGNKIDIPYAASEEELRYHLGLSNF----TT--------GKGK--VN  159 (193)
Q Consensus        97 ~~~~-~~~~~~~~~~~~~~~~~--~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~----~~--------~~~~--~~  159 (193)
                      +.+. .++....+++..++...  ..+++|+++++||+|+..+...+.+.+.++...-    +.        +...  +.
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~  161 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES  161 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence            9987 67788888877765432  2258999999999999876665554444431110    00        0000  00


Q ss_pred             ---------cCCCCCcceEEEEeeeecCC-ChhhHHHhhhh
Q 029437          160 ---------LADSNVRPLEVFMCSIVRKM-GYGDGFKWLSQ  190 (193)
Q Consensus       160 ---------~~~~~~~~~~~~~~Sa~~g~-gv~el~~~i~~  190 (193)
                               --+.....+.+++||++.+. |++++.+||.+
T Consensus       162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~  202 (203)
T cd04105         162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE  202 (203)
T ss_pred             cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence                     00111246889999999887 69999999975

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.93  E-value=9.9e-26  Score=148.51  Aligned_cols=157  Identities=18%  Similarity=0.226  Sum_probs=123.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCC----CcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQ----YPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~t~----~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      ....||++++|..-+|||||.-+++...|...- .|.    ......+......+.+|||+|+++|..+-+-+++..+++
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa   89 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA   89 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence            346799999999999999999999988876422 121    112333444567899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC--CCCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP--YAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++|+|++|+++|+.+..|..++..... ..+-+++|+||+|+.  +++...+....-+.                 -...
T Consensus        90 lLVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEeeR~Vt~qeAe~YAes-----------------vGA~  151 (218)
T KOG0088|consen   90 LLVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEERQVTRQEAEAYAES-----------------VGAL  151 (218)
T ss_pred             EEEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHhhhhhHHHHHHHHHh-----------------hchh
Confidence            999999999999999999999865543 578899999999997  34444433222221                 1245


Q ss_pred             EEEeeeecCCChhhHHHhhhhh
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                      ++++||+.+.||+|+|+.+.+.
T Consensus       152 y~eTSAk~N~Gi~elFe~Lt~~  173 (218)
T KOG0088|consen  152 YMETSAKDNVGISELFESLTAK  173 (218)
T ss_pred             heecccccccCHHHHHHHHHHH
Confidence            7899999999999999988764

>cd04171 SelB SelB subfamily

Probab=99.93  E-value=1.3e-24  Score=150.53  Aligned_cols=149  Identities=21%  Similarity=0.121  Sum_probs=102.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC---ccc---cCCCCCcceeEEEeC-CEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER---LVQ---HQPTQYPTSEELSIG-KIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~---~~~---~~~t~~~~~~~~~~~-~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      +.|+++|++|||||||++++.+..   +..   ...|.......+.+. +..+.+|||||++.+.......+..+|++++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            368999999999999999998643   221   122444444455555 6789999999999887766677889999999


Q ss_pred             EEECCC---hhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH----HHHHHhhCCCccccCCCccccCCCCCc
Q 029437           94 LVDAYD---KERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE----EELRYHLGLSNFTTGKGKVNLADSNVR  166 (193)
Q Consensus        94 v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (193)
                      |+|+++   +++...+    .. +...  ...|+++++||+|+......    .++.+.+....              ..
T Consensus        81 V~d~~~~~~~~~~~~~----~~-~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--------------~~  139 (164)
T cd04171          81 VVAADEGIMPQTREHL----EI-LELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTF--------------LA  139 (164)
T ss_pred             EEECCCCccHhHHHHH----HH-HHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcC--------------cC
Confidence            999977   3332222    11 1111  12499999999999743211    22223322110              02


Q ss_pred             ceEEEEeeeecCCChhhHHHhhhh
Q 029437          167 PLEVFMCSIVRKMGYGDGFKWLSQ  190 (193)
Q Consensus       167 ~~~~~~~Sa~~g~gv~el~~~i~~  190 (193)
                      ..+++++||++|.|+++++++|.+
T Consensus       140 ~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         140 DAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             CCcEEEEeCCCCcCHHHHHHHHhh
Confidence            357899999999999999999864

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=4.8e-26  Score=150.10  Aligned_cols=155  Identities=20%  Similarity=0.285  Sum_probs=123.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCCc--ceeEEEeC-----------CEEEEEEEcCChhhhHhhHH
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQYP--TSEELSIG-----------KIKFKAFDLGGHQIARRVWK   82 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~t~~~--~~~~~~~~-----------~~~~~~~D~~G~~~~~~~~~   82 (193)
                      ++.-++.+.+|++|+||||++.+++...|.... .|+++  ....+.+.           .+.+++|||+|+++++++..
T Consensus         6 ydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTT   85 (219)
T KOG0081|consen    6 YDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTT   85 (219)
T ss_pred             HHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHH
Confidence            445578889999999999999999999987643 34443  22333221           26789999999999999999


Q ss_pred             hhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHH---HHHhhCCCccccCCCc
Q 029437           83 DYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEE---LRYHLGLSNFTTGKGK  157 (193)
Q Consensus        83 ~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~---~~~~~~~~~~~~~~~~  157 (193)
                      .+++.+-++++++|.++++||-+++.|+.++-.+.-..+..+++++||+|+..  .++.++   +.+++++         
T Consensus        86 AFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kygl---------  156 (219)
T KOG0081|consen   86 AFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGL---------  156 (219)
T ss_pred             HHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCC---------
Confidence            99999999999999999999999999999997776677888999999999983  233322   4445544         


Q ss_pred             cccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          158 VNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       158 ~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                                 ++|++||.+|.||++..+.+...
T Consensus       157 -----------PYfETSA~tg~Nv~kave~Lldl  179 (219)
T KOG0081|consen  157 -----------PYFETSACTGTNVEKAVELLLDL  179 (219)
T ss_pred             -----------CeeeeccccCcCHHHHHHHHHHH
Confidence                       55999999999999887776543

>PRK15494 era GTPase Era; Provisional

Probab=99.93  E-value=3.5e-24  Score=163.94  Aligned_cols=153  Identities=20%  Similarity=0.236  Sum_probs=107.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcccc----CCCCCcceeEEEeCCEEEEEEEcCChhh-hH-------hhHHhhcc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQH----QPTQYPTSEELSIGKIKFKAFDLGGHQI-AR-------RVWKDYYA   86 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~G~~~-~~-------~~~~~~~~   86 (193)
                      +..+|+++|.+|||||||++++.+..+...    .+|.......+..++..+.+|||||... +.       ......+.
T Consensus        51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~  130 (339)
T PRK15494         51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLH  130 (339)
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhh
Confidence            456999999999999999999998887532    2344445556677888999999999742 11       11123467


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCc
Q 029437           87 KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVR  166 (193)
Q Consensus        87 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (193)
                      .+|++++|+|+.+.  +.....++...+..   .+.|+++++||+|+... ...++.+.+....               .
T Consensus       131 ~aDvil~VvD~~~s--~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~~---------------~  189 (339)
T PRK15494        131 SADLVLLIIDSLKS--FDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTENH---------------P  189 (339)
T ss_pred             hCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhcC---------------C
Confidence            99999999998663  33444433333322   25678899999998643 3344444432211               2


Q ss_pred             ceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          167 PLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       167 ~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ...++++||++|.|+++++++|.+.+
T Consensus       190 ~~~i~~iSAktg~gv~eL~~~L~~~l  215 (339)
T PRK15494        190 DSLLFPISALSGKNIDGLLEYITSKA  215 (339)
T ss_pred             CcEEEEEeccCccCHHHHHHHHHHhC
Confidence            35789999999999999999998765

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.92  E-value=3.1e-24  Score=151.81  Aligned_cols=157  Identities=22%  Similarity=0.262  Sum_probs=128.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCc---ceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYP---TSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL   94 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~---~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v   94 (193)
                      ...|++++|.+|+|||+|..++....|... .||+..   ....+......+.++||+|++.+..+...++..+|++++|
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            357999999999999999999999999874 566643   2333444457899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      ++++++.||+.+..++..+.......++|+++|+||+|+..  .+..++-..--.                 ...+.+++
T Consensus        82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~-----------------~~~~~f~E  144 (196)
T KOG0395|consen   82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALAR-----------------SWGCAFIE  144 (196)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHH-----------------hcCCcEEE
Confidence            99999999999999999997666667899999999999984  555554222210                 12356899


Q ss_pred             eeeecCCChhhHHHhhhhhc
Q 029437          173 CSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +||+.+.+++++|..|.+.+
T Consensus       145 ~Sak~~~~v~~~F~~L~r~~  164 (196)
T KOG0395|consen  145 TSAKLNYNVDEVFYELVREI  164 (196)
T ss_pred             eeccCCcCHHHHHHHHHHHH
Confidence            99999999999999998754

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.92  E-value=4e-24  Score=162.68  Aligned_cols=156  Identities=22%  Similarity=0.216  Sum_probs=111.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-c--cCCCCCcceeEEEe-CCEEEEEEEcCChhh-------hHhhHHhhcccCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLV-Q--HQPTQYPTSEELSI-GKIKFKAFDLGGHQI-------ARRVWKDYYAKVD   89 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~-------~~~~~~~~~~~~d   89 (193)
                      ..|+++|.||||||||++++++.... .  ..+|..++...+.+ +..++.+||+||...       ....+...+..++
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~  238 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR  238 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence            46899999999999999999976532 1  23477788888887 557899999999632       2223334557899


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHcC-CCCCCCcEEEEEeCCCCCCCCCHHH-HHHhhCCCccccCCCccccCCCCCcc
Q 029437           90 AVVYLVDAYDKERFAESKKELDALLSD-EALANVPFLVLGNKIDIPYAASEEE-LRYHLGLSNFTTGKGKVNLADSNVRP  167 (193)
Q Consensus        90 ~vl~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~pviiv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (193)
                      ++++|+|+++.++++....|..++... ....+.|+++|+||+|+.......+ ..+.+ ...               ..
T Consensus       239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~-~~~---------------~~  302 (335)
T PRK12299        239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE-LAA---------------LG  302 (335)
T ss_pred             EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH-HHh---------------cC
Confidence            999999999877777776666666332 1234789999999999974432221 11111 011               12


Q ss_pred             eEEEEeeeecCCChhhHHHhhhhhc
Q 029437          168 LEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       168 ~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .+++++||+++.|+++++++|.+.+
T Consensus       303 ~~i~~iSAktg~GI~eL~~~L~~~l  327 (335)
T PRK12299        303 GPVFLISAVTGEGLDELLRALWELL  327 (335)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999998765

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.92  E-value=1.1e-24  Score=147.58  Aligned_cols=134  Identities=25%  Similarity=0.286  Sum_probs=92.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChh-----hhHhhHHhhcccCCEEEEEEE
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQ-----IARRVWKDYYAKVDAVVYLVD   96 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~-----~~~~~~~~~~~~~d~vl~v~d   96 (193)
                      ||+++|++|+|||||++++.+..+. ..+|.     .+.+..   .+|||||..     .++.+.. .++.+|++++|+|
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~-----~~~~~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d   71 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQ-----AVEYND---GAIDTPGEYVENRRLYSALIV-TAADADVIALVQS   71 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc-cccce-----eEEEcC---eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEec
Confidence            7999999999999999999987653 22222     233333   789999973     3344433 4789999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437           97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI  175 (193)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  175 (193)
                      ++++.++.. ..+ ....      ..|+++++||+|+.+. ...++..+.... .               ...+++++||
T Consensus        72 ~~~~~s~~~-~~~-~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~-~---------------~~~~~~~~Sa  127 (142)
T TIGR02528        72 ATDPESRFP-PGF-ASIF------VKPVIGLVTKIDLAEADVDIERAKELLET-A---------------GAEPIFEISS  127 (142)
T ss_pred             CCCCCcCCC-hhH-HHhc------cCCeEEEEEeeccCCcccCHHHHHHHHHH-c---------------CCCcEEEEec
Confidence            999987643 222 2221      2499999999999642 222222221111 1               1136799999


Q ss_pred             ecCCChhhHHHhhh
Q 029437          176 VRKMGYGDGFKWLS  189 (193)
Q Consensus       176 ~~g~gv~el~~~i~  189 (193)
                      ++|.|++++|++|.
T Consensus       128 ~~~~gi~~l~~~l~  141 (142)
T TIGR02528       128 VDEQGLEALVDYLN  141 (142)
T ss_pred             CCCCCHHHHHHHHh
Confidence            99999999999985

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.92  E-value=1.6e-23  Score=149.21  Aligned_cols=115  Identities=17%  Similarity=0.334  Sum_probs=95.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEe-------CCEEEEEEEcCChhhhHhhHHhhcccCCE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSI-------GKIKFKAFDLGGHQIARRVWKDYYAKVDA   90 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~-------~~~~~~~~D~~G~~~~~~~~~~~~~~~d~   90 (193)
                      +||+++|++|+|||||++++....|.. ..+|++...  ..+.+       ..+.+.+|||+|++.+..+...+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999988765 445666432  22333       34689999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCC------------------CCCCCcEEEEEeCCCCCC
Q 029437           91 VVYLVDAYDKERFAESKKELDALLSDE------------------ALANVPFLVLGNKIDIPY  135 (193)
Q Consensus        91 vl~v~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~pviiv~nK~D~~~  135 (193)
                      +|+|+|++++++++++..|+.++....                  ...++|+++|+||.|+..
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~  143 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP  143 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence            999999999999999999998886531                  224799999999999963

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.92  E-value=9.2e-24  Score=146.88  Aligned_cols=157  Identities=23%  Similarity=0.225  Sum_probs=107.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcccc---CCCCCcceeEEEeC---CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQH---QPTQYPTSEELSIG---KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~---~~t~~~~~~~~~~~---~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      .|+++|++|+|||||++++...++...   .+|.......+...   +..+.+|||||+..+..++...+..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            589999999999999999998876553   22333333444443   678999999999988888888889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI  175 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  175 (193)
                      |+++.... .....+..+ ..   .++|+++++||+|+.... .+.....+...... .      .......++++++||
T Consensus        82 d~~~~~~~-~~~~~~~~~-~~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~Sa  148 (168)
T cd01887          82 AADDGVMP-QTIEAIKLA-KA---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQ-G------EDEWGGDVQIVPTSA  148 (168)
T ss_pred             ECCCCccH-HHHHHHHHH-HH---cCCCEEEEEEceeccccc-HHHHHHHHHHhhcc-c------cccccCcCcEEEeec
Confidence            99874321 112222222 11   478999999999986432 22222222111000 0      000113467999999


Q ss_pred             ecCCChhhHHHhhhhh
Q 029437          176 VRKMGYGDGFKWLSQY  191 (193)
Q Consensus       176 ~~g~gv~el~~~i~~~  191 (193)
                      ++|.|+++++++|.+.
T Consensus       149 ~~~~gi~~l~~~l~~~  164 (168)
T cd01887         149 KTGEGIDDLLEAILLL  164 (168)
T ss_pred             ccCCCHHHHHHHHHHh
Confidence            9999999999999875

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.92  E-value=1.8e-23  Score=160.30  Aligned_cols=151  Identities=21%  Similarity=0.233  Sum_probs=110.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEe-CCEEEEEEEcCCh---------hhhHhhHHhhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSI-GKIKFKAFDLGGH---------QIARRVWKDYY   85 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~D~~G~---------~~~~~~~~~~~   85 (193)
                      ..++|+++|.+|+|||||+|++++.++..   ..+|.++....+.+ ++..+.+|||+|.         +.+.... ..+
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~  266 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEV  266 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence            44899999999999999999999987432   34577787777877 5689999999997         2233322 346


Q ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCC
Q 029437           86 AKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNV  165 (193)
Q Consensus        86 ~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (193)
                      ..+|++++|+|++++.+......+ ..++......+.|+++|+||+|+.+.   .++.....                  
T Consensus       267 ~~ADlil~VvD~s~~~~~~~~~~~-~~~L~~l~~~~~piIlV~NK~Dl~~~---~~v~~~~~------------------  324 (351)
T TIGR03156       267 READLLLHVVDASDPDREEQIEAV-EKVLEELGAEDIPQLLVYNKIDLLDE---PRIERLEE------------------  324 (351)
T ss_pred             HhCCEEEEEEECCCCchHHHHHHH-HHHHHHhccCCCCEEEEEEeecCCCh---HhHHHHHh------------------
Confidence            789999999999998776555433 33333334457899999999999642   22211110                  


Q ss_pred             cceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          166 RPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       166 ~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ...+++++||++|.|+++++++|.+.+
T Consensus       325 ~~~~~i~iSAktg~GI~eL~~~I~~~~  351 (351)
T TIGR03156       325 GYPEAVFVSAKTGEGLDLLLEAIAERL  351 (351)
T ss_pred             CCCCEEEEEccCCCCHHHHHHHHHhhC
Confidence            012478999999999999999998753

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.92  E-value=5.4e-24  Score=144.24  Aligned_cols=141  Identities=27%  Similarity=0.314  Sum_probs=102.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCCEEEEEEEcCChhhh------HhhHHhhc--ccCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGKIKFKAFDLGGHQIA------RRVWKDYY--AKVD   89 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~------~~~~~~~~--~~~d   89 (193)
                      ++|+++|.||+|||||+|++++.....   ...|.....+.+.+.+..+.++|+||..+.      ......++  ...|
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D   80 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD   80 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence            589999999999999999999988432   334777788888999999999999994332      22223333  5899


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC----CCHHHHHHhhCCCccccCCCccccCCCCC
Q 029437           90 AVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA----ASEEELRYHLGLSNFTTGKGKVNLADSNV  165 (193)
Q Consensus        90 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (193)
                      ++++|+|+++.+.   ......++.+    .++|+++++||+|+...    .+.+.+.+.++                  
T Consensus        81 ~ii~VvDa~~l~r---~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg------------------  135 (156)
T PF02421_consen   81 LIIVVVDATNLER---NLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLG------------------  135 (156)
T ss_dssp             EEEEEEEGGGHHH---HHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT------------------
T ss_pred             EEEEECCCCCHHH---HHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC------------------
Confidence            9999999987643   3344455544    38999999999999732    24455666665                  


Q ss_pred             cceEEEEeeeecCCChhhHHHhh
Q 029437          166 RPLEVFMCSIVRKMGYGDGFKWL  188 (193)
Q Consensus       166 ~~~~~~~~Sa~~g~gv~el~~~i  188 (193)
                        ++++++||++|+|++++++.|
T Consensus       136 --~pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  136 --VPVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             --S-EEEEBTTTTBTHHHHHHHH
T ss_pred             --CCEEEEEeCCCcCHHHHHhhC
Confidence              456999999999999999876

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.92  E-value=2.4e-23  Score=147.35  Aligned_cols=163  Identities=20%  Similarity=0.159  Sum_probs=112.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccC-------------------CCCCcceeEEEeCCEEEEEEEcCChhhhHhhHH
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQHQ-------------------PTQYPTSEELSIGKIKFKAFDLGGHQIARRVWK   82 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~   82 (193)
                      +|+|+|.+|||||||++++.+.......                   .+.........+.+..+.+|||||+..+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            4899999999999999999877655322                   233334455666788999999999998888888


Q ss_pred             hhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH----HHHhhCCCccccCCCcc
Q 029437           83 DYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE----LRYHLGLSNFTTGKGKV  158 (193)
Q Consensus        83 ~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~  158 (193)
                      ..++.+|++++|+|+.++.+.. ....+.....    .+.|+++++||+|+........    +.+.++.......... 
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  154 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQ-TREHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE-  154 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh-
Confidence            8889999999999998765432 2233333322    5899999999999985333222    3333322110000000 


Q ss_pred             ccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          159 NLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       159 ~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                        ........+++++||++|.|+++++++|.+.+
T Consensus       155 --~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         155 --GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             --hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence              00011347899999999999999999998875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR00436 era GTP-binding protein Era

Probab=99.92  E-value=1.7e-23  Score=156.00  Aligned_cols=150  Identities=17%  Similarity=0.175  Sum_probs=100.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCEEEEEEEcCChhhh--------HhhHHhhcccCC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQIA--------RRVWKDYYAKVD   89 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~~~~~~~~d   89 (193)
                      +|+++|.||||||||+|++.+..+....+    |..........++..+.+|||||....        .......+..+|
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD   81 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD   81 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence            68999999999999999999987653222    333223333445678999999996432        112234568999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           90 AVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        90 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++++|+|+++..+..   ..+...+..   .+.|+++++||+|+.......+....+....               ...+
T Consensus        82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~---------------~~~~  140 (270)
T TIGR00436        82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAILE---------------DFKD  140 (270)
T ss_pred             EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhhc---------------CCCc
Confidence            999999998875543   233333322   4789999999999963211111111111001               1236


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++++||++|.|+++++++|.+.+
T Consensus       141 v~~iSA~~g~gi~~L~~~l~~~l  163 (270)
T TIGR00436       141 IVPISALTGDNTSFLAAFIEVHL  163 (270)
T ss_pred             eEEEecCCCCCHHHHHHHHHHhC
Confidence            89999999999999999998765

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK04213 GTP-binding protein; Provisional

Probab=99.91  E-value=2.6e-24  Score=154.04  Aligned_cols=158  Identities=21%  Similarity=0.243  Sum_probs=100.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEeCCEEEEEEEcCC-----------hhhhHhhHHhhc
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELSIGKIKFKAFDLGG-----------HQIARRVWKDYY   85 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~G-----------~~~~~~~~~~~~   85 (193)
                      ...++|+++|++|+|||||++++.+..+.. ..|+.......+.+.  .+.+|||||           ++.++..+..++
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   84 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI   84 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence            356899999999999999999999877542 223322223333333  689999999           456666555554


Q ss_pred             c----cCCEEEEEEECCChhhH-H--------HHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCc
Q 029437           86 A----KVDAVVYLVDAYDKERF-A--------ESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSN  150 (193)
Q Consensus        86 ~----~~d~vl~v~d~~~~~~~-~--------~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~  150 (193)
                      .    .++++++|+|.++...+ .        .....+...+.   ..++|+++++||+|+....  ...++.+.++...
T Consensus        85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~  161 (201)
T PRK04213         85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYP  161 (201)
T ss_pred             HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcHHHHHHHHHHHhcCCc
Confidence            3    46788899998653221 0        00111112222   2479999999999996433  2233444444311


Q ss_pred             cccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          151 FTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                              .   .......++++||++| |+++++++|.+.+
T Consensus       162 --------~---~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~  191 (201)
T PRK04213        162 --------P---WRQWQDIIAPISAKKG-GIEELKEAIRKRL  191 (201)
T ss_pred             --------c---ccccCCcEEEEecccC-CHHHHHHHHHHhh
Confidence                    0   0001235899999999 9999999998765

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.91  E-value=2.9e-23  Score=141.25  Aligned_cols=150  Identities=25%  Similarity=0.333  Sum_probs=112.4

Q ss_pred             EEcCCCCCHHHHHHHHhcCCc-cc-cCCCCCcceeEEEeC----CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECC
Q 029437           25 FLGLDNAGKTTLLHMLKDERL-VQ-HQPTQYPTSEELSIG----KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAY   98 (193)
Q Consensus        25 v~G~~~~GKssl~~~l~~~~~-~~-~~~t~~~~~~~~~~~----~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~   98 (193)
                      ++|++|+|||||++++.+... .. ..++. .........    +..+.+||+||...........++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998876 22 33343 444444443    678999999999888877777889999999999999


Q ss_pred             ChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHH-HhhCCCccccCCCccccCCCCCcceEEEEeeeec
Q 029437           99 DKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELR-YHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVR  177 (193)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  177 (193)
                      ++.+......++..........+.|+++++||+|+.......... .......               ...+++++|+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~s~~~  144 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKE---------------LGVPYFETSAKT  144 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhh---------------cCCcEEEEecCC
Confidence            998888877774444444455799999999999997544333321 1111111               346789999999


Q ss_pred             CCChhhHHHhhhh
Q 029437          178 KMGYGDGFKWLSQ  190 (193)
Q Consensus       178 g~gv~el~~~i~~  190 (193)
                      +.|+++++++|.+
T Consensus       145 ~~~i~~~~~~l~~  157 (157)
T cd00882         145 GENVEELFEELAE  157 (157)
T ss_pred             CCChHHHHHHHhC
Confidence            9999999999863

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.91  E-value=4.8e-23  Score=141.31  Aligned_cols=153  Identities=23%  Similarity=0.334  Sum_probs=111.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYL   94 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v   94 (193)
                      .+||+++|++|+|||||++++....+.. ..++.....  ..+..++  ..+.+||+||+..+..........++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            3699999999999999999999888443 223333333  3355666  7899999999998888888888889999999


Q ss_pred             EECCCh-hhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           95 VDAYDK-ERFAESK-KELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        95 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      +|.... .++.... .+...+..... .+.|+++++||+|+.......+....+...                ...++++
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~----------------~~~~~~~  143 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAKL----------------NGEPIIP  143 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhhc----------------cCCceEE
Confidence            998776 5555554 44444433332 288999999999997543233333333221                2245899


Q ss_pred             eeeecCCChhhHHHhhh
Q 029437          173 CSIVRKMGYGDGFKWLS  189 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~  189 (193)
                      +||++|.|+++++++|.
T Consensus       144 ~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       144 LSAETGKNIDSAFKIVE  160 (161)
T ss_pred             eecCCCCCHHHHHHHhh
Confidence            99999999999999985

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.91  E-value=3.6e-23  Score=142.15  Aligned_cols=144  Identities=20%  Similarity=0.186  Sum_probs=104.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCEEEEEEEcCChhhhHh--------hHHhhcccC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQIARR--------VWKDYYAKV   88 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~~~   88 (193)
                      ++|+++|++|+|||||++++.+.......+    +.......+...+.++.+|||||......        .....+..+
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~   81 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA   81 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence            589999999999999999999887543222    23333455666778999999999654321        122355789


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437           89 DAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPL  168 (193)
Q Consensus        89 d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (193)
                      |++++|+|++++.+......+..       ..+.|+++++||+|+......       . .              .....
T Consensus        82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~-------~-~--------------~~~~~  132 (157)
T cd04164          82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL-------L-S--------------LLAGK  132 (157)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc-------c-c--------------ccCCC
Confidence            99999999998765544332222       358999999999999743322       0 0              11345


Q ss_pred             EEEEeeeecCCChhhHHHhhhhhcC
Q 029437          169 EVFMCSIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       169 ~~~~~Sa~~g~gv~el~~~i~~~~~  193 (193)
                      +++++||+++.|+++++++|.+.++
T Consensus       133 ~~~~~Sa~~~~~v~~l~~~l~~~~~  157 (157)
T cd04164         133 PIIAISAKTGEGLDELKEALLELAG  157 (157)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHhhC
Confidence            7899999999999999999987653

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.91  E-value=4e-25  Score=153.43  Aligned_cols=169  Identities=21%  Similarity=0.319  Sum_probs=123.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc-ceeEEE---eCCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP-TSEELS---IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~---~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      ..+|++|+|+.++|||+|+-.+..+.|+. +.||+-. ....+.   ...+.+.+|||+|++.|..+++..++.+|.+|+
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~   82 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL   82 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence            45799999999999999999999888876 5566542 223333   445889999999999999888888999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH-HHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE-EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      ||++.++++++++...|.+-+.+ ..+++|+|+|++|.|+...... +++... +....+.. ....+++ ..+...+++
T Consensus        83 cfsv~~p~S~~nv~~kW~pEi~~-~cp~vpiiLVGtk~DLr~d~~~~~~l~~~-~~~~Vt~~-~g~~lA~-~iga~~y~E  158 (198)
T KOG0393|consen   83 CFSVVSPESFENVKSKWIPEIKH-HCPNVPIILVGTKADLRDDPSTLEKLQRQ-GLEPVTYE-QGLELAK-EIGAVKYLE  158 (198)
T ss_pred             EEEcCChhhHHHHHhhhhHHHHh-hCCCCCEEEEeehHHhhhCHHHHHHHHhc-cCCcccHH-HHHHHHH-HhCcceeee
Confidence            99999999999988766665544 3489999999999999833211 122211 11121111 1112222 224578999


Q ss_pred             eeeecCCChhhHHHhhhhh
Q 029437          173 CSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~  191 (193)
                      |||++..|+.++|+....+
T Consensus       159 cSa~tq~~v~~vF~~a~~~  177 (198)
T KOG0393|consen  159 CSALTQKGVKEVFDEAIRA  177 (198)
T ss_pred             ehhhhhCCcHHHHHHHHHH
Confidence            9999999999999876554

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.91  E-value=1e-23  Score=147.67  Aligned_cols=153  Identities=22%  Similarity=0.225  Sum_probs=106.3

Q ss_pred             EEcCCCCCHHHHHHHHhcCCcc-c--cCCCCCcceeEEEeC-CEEEEEEEcCChhhh----Hh---hHHhhcccCCEEEE
Q 029437           25 FLGLDNAGKTTLLHMLKDERLV-Q--HQPTQYPTSEELSIG-KIKFKAFDLGGHQIA----RR---VWKDYYAKVDAVVY   93 (193)
Q Consensus        25 v~G~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~~-~~~~~~~D~~G~~~~----~~---~~~~~~~~~d~vl~   93 (193)
                      ++|++|||||||++++.+.+.. .  ..+|..+....+.++ +..+.+|||||....    +.   .+...++.+|++++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~   80 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH   80 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence            5799999999999999988641 1  223556666667777 889999999996321    11   22334678999999


Q ss_pred             EEECCCh------hhHHHHHHHHHHHHcCCC------CCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccC
Q 029437           94 LVDAYDK------ERFAESKKELDALLSDEA------LANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLA  161 (193)
Q Consensus        94 v~d~~~~------~~~~~~~~~~~~~~~~~~------~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (193)
                      |+|+.++      .++.....+...+.....      ..+.|+++++||+|+.......+.........           
T Consensus        81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~-----------  149 (176)
T cd01881          81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALE-----------  149 (176)
T ss_pred             EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcC-----------
Confidence            9999887      456666666665543322      24799999999999974333222210011111           


Q ss_pred             CCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          162 DSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       162 ~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                          ....++++||++|.|+++++++|.+.+
T Consensus       150 ----~~~~~~~~Sa~~~~gl~~l~~~l~~~~  176 (176)
T cd01881         150 ----EGAEVVPISAKTEEGLDELIRAIYELL  176 (176)
T ss_pred             ----CCCCEEEEehhhhcCHHHHHHHHHhhC
Confidence                235689999999999999999997653

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.91  E-value=2.5e-23  Score=158.24  Aligned_cols=157  Identities=21%  Similarity=0.206  Sum_probs=111.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCC-EEEEEEEcCChhh-------hHhhHHhhcccCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGK-IKFKAFDLGGHQI-------ARRVWKDYYAKVD   89 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~-------~~~~~~~~~~~~d   89 (193)
                      ..|+++|.||||||||++++++.....   ..+|..++...+.+.+ ..+.+||+||...       ....+...+..++
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad  237 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR  237 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence            579999999999999999999765321   2346777788888776 8999999999742       2222333456799


Q ss_pred             EEEEEEECCCh---hhHHHHHHHHHHHHcC-CCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCC
Q 029437           90 AVVYLVDAYDK---ERFAESKKELDALLSD-EALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNV  165 (193)
Q Consensus        90 ~vl~v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (193)
                      ++++|+|+++.   +.++....+..++... ....+.|+++|+||+|+......++..+.+....               
T Consensus       238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~---------------  302 (329)
T TIGR02729       238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKAL---------------  302 (329)
T ss_pred             EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHc---------------
Confidence            99999999876   4556665555554322 1235789999999999975433333333322111               


Q ss_pred             cceEEEEeeeecCCChhhHHHhhhhhcC
Q 029437          166 RPLEVFMCSIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       166 ~~~~~~~~Sa~~g~gv~el~~~i~~~~~  193 (193)
                       ..+++++||+++.|+++++++|.+.++
T Consensus       303 -~~~vi~iSAktg~GI~eL~~~I~~~l~  329 (329)
T TIGR02729       303 -GKPVFPISALTGEGLDELLYALAELLE  329 (329)
T ss_pred             -CCcEEEEEccCCcCHHHHHHHHHHHhC
Confidence             146899999999999999999988763

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=4.1e-23  Score=133.90  Aligned_cols=156  Identities=21%  Similarity=0.267  Sum_probs=122.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCC-CCCc----ceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQP-TQYP----TSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-t~~~----~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      +..-++-+++|+-|+|||.|++++...+|....| |++.    ....+....+++++|||+|+++++.....+++.+.+.
T Consensus         8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga   87 (215)
T KOG0097|consen    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   87 (215)
T ss_pred             hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence            3456889999999999999999999998876555 4443    3344455679999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++|+|++.+.++.++..|+....+. ..++..+++++||.|+..  .+.-++... +...                +...
T Consensus        88 lmvyditrrstynhlsswl~dar~l-tnpnt~i~lignkadle~qrdv~yeeak~-faee----------------ngl~  149 (215)
T KOG0097|consen   88 LMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLESQRDVTYEEAKE-FAEE----------------NGLM  149 (215)
T ss_pred             eEEEEehhhhhhhhHHHHHhhhhcc-CCCceEEEEecchhhhhhcccCcHHHHHH-HHhh----------------cCeE
Confidence            9999999999999998988877543 447888999999999973  333333222 2111                2367


Q ss_pred             EEEeeeecCCChhhHHHhhhh
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQ  190 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~  190 (193)
                      ++++||++|+++++.|-.-.+
T Consensus       150 fle~saktg~nvedafle~ak  170 (215)
T KOG0097|consen  150 FLEASAKTGQNVEDAFLETAK  170 (215)
T ss_pred             EEEecccccCcHHHHHHHHHH
Confidence            899999999999987755443

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.91  E-value=3.5e-23  Score=142.52  Aligned_cols=146  Identities=24%  Similarity=0.196  Sum_probs=101.8

Q ss_pred             EEcCCCCCHHHHHHHHhcCCccc-cC--CCCCcceeEEEeCCEEEEEEEcCChhhhHh------hHHhhc--ccCCEEEE
Q 029437           25 FLGLDNAGKTTLLHMLKDERLVQ-HQ--PTQYPTSEELSIGKIKFKAFDLGGHQIARR------VWKDYY--AKVDAVVY   93 (193)
Q Consensus        25 v~G~~~~GKssl~~~l~~~~~~~-~~--~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~--~~~d~vl~   93 (193)
                      |+|.+|+|||||++++.+..+.. ..  .|.......+.+++..+.+|||||+..+..      +...++  +.+|++++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~   80 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN   80 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence            57999999999999999876332 22  355556667777788999999999876543      234444  48999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      |+|+.++++..   .++..+..    .++|+++++||+|+............+...                ...+++++
T Consensus        81 v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~----------------~~~~~~~i  137 (158)
T cd01879          81 VVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLSEL----------------LGVPVVPT  137 (158)
T ss_pred             EeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHHHh----------------hCCCeEEE
Confidence            99998865422   23333322    378999999999997433221111111100                12468999


Q ss_pred             eeecCCChhhHHHhhhhhcC
Q 029437          174 SIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~~~  193 (193)
                      ||.+|.|+++++++|.+.++
T Consensus       138 Sa~~~~~~~~l~~~l~~~~~  157 (158)
T cd01879         138 SARKGEGIDELKDAIAELAE  157 (158)
T ss_pred             EccCCCCHHHHHHHHHHHhc
Confidence            99999999999999987653

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01889 SelB_euk SelB subfamily

Probab=99.91  E-value=7.8e-23  Score=145.38  Aligned_cols=157  Identities=18%  Similarity=0.130  Sum_probs=102.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC----cc------ccCCCCCcceeEEEeC--------------CEEEEEEEcCChhh
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER----LV------QHQPTQYPTSEELSIG--------------KIKFKAFDLGGHQI   76 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~----~~------~~~~t~~~~~~~~~~~--------------~~~~~~~D~~G~~~   76 (193)
                      ++|+++|++|+|||||+++++...    +.      ....|.+.....+.+.              +..+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            589999999999999999998631    11      1123444444444433              67899999999977


Q ss_pred             hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHH----HHHHhhCCCccc
Q 029437           77 ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEE----ELRYHLGLSNFT  152 (193)
Q Consensus        77 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~----~~~~~~~~~~~~  152 (193)
                      +........+.+|++++|+|+.+....+.... +. +...   .+.|+++++||+|+......+    ++.+.+..... 
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~-~~-~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~-  154 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAEC-LV-IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLE-  154 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHH-HH-HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHH-
Confidence            65444445577899999999987533222211 11 1111   267999999999997433222    22222211100 


Q ss_pred             cCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          153 TGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                               .......+++++||++|.|+++++++|...+
T Consensus       155 ---------~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~  185 (192)
T cd01889         155 ---------KTRFKNSPIIPVSAKPGGGEAELGKDLNNLI  185 (192)
T ss_pred             ---------hcCcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence                     0000236789999999999999999998765

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.90  E-value=4.8e-25  Score=141.39  Aligned_cols=148  Identities=26%  Similarity=0.333  Sum_probs=116.8

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCccc--cCCCCCcce----eEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437           24 LFLGLDNAGKTTLLHMLKDERLVQ--HQPTQYPTS----EELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA   97 (193)
Q Consensus        24 ~v~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~----~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~   97 (193)
                      +++|++++|||.|+-++..+.|..  ...|+++..    ..+....+++++|||+|++++++....+++.+|++++++|+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            368999999999998887776653  223444432    23344568999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--C---CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           98 YDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--A---ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      .+..||++.+.|+.++-+ .....+.+.+++||+|+.+  .   .+-+.+.+.+++++                    ++
T Consensus        81 ankasfdn~~~wlsei~e-y~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipf--------------------me  139 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHE-YAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPF--------------------ME  139 (192)
T ss_pred             ccchhHHHHHHHHHHHHH-HHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCc--------------------ee
Confidence            999999999999998843 3335777889999999962  2   23344666666555                    89


Q ss_pred             eeeecCCChhhHHHhhhhhc
Q 029437          173 CSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +||++|.|++-.|..|.+.+
T Consensus       140 tsaktg~nvd~af~~ia~~l  159 (192)
T KOG0083|consen  140 TSAKTGFNVDLAFLAIAEEL  159 (192)
T ss_pred             ccccccccHhHHHHHHHHHH
Confidence            99999999999998887654

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=8.4e-23  Score=162.93  Aligned_cols=157  Identities=17%  Similarity=0.154  Sum_probs=109.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc--cC--CCCCcceeEEEeCCEEEEEEEcCCh----------hhhHhhH-Hh
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ--HQ--PTQYPTSEELSIGKIKFKAFDLGGH----------QIARRVW-KD   83 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~--~t~~~~~~~~~~~~~~~~~~D~~G~----------~~~~~~~-~~   83 (193)
                      ..++|+++|.+|+|||||++++++.+...  ..  .|.+.....+.+++..+.+|||||.          +.+..+. ..
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~  289 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA  289 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence            45899999999999999999999887532  22  2444555666778888999999995          2233332 23


Q ss_pred             hcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCC
Q 029437           84 YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADS  163 (193)
Q Consensus        84 ~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (193)
                      .+..+|++++|+|++++.+.+.. .++..+..    .+.|+|+|+||+|+.................            .
T Consensus       290 ~i~~ad~vilV~Da~~~~s~~~~-~~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l------------~  352 (472)
T PRK03003        290 AIEAAEVAVVLIDASEPISEQDQ-RVLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDREL------------A  352 (472)
T ss_pred             HHhcCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhc------------c
Confidence            56899999999999988776554 33444332    4789999999999974322222222221111            0


Q ss_pred             CCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          164 NVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .....+++++||++|.|++++|+.|.+.+
T Consensus       353 ~~~~~~~~~~SAk~g~gv~~lf~~i~~~~  381 (472)
T PRK03003        353 QVPWAPRVNISAKTGRAVDKLVPALETAL  381 (472)
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            00235789999999999999999998754

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=1.2e-22  Score=161.96  Aligned_cols=150  Identities=19%  Similarity=0.207  Sum_probs=104.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccCCC----CCcceeEEEeCCEEEEEEEcCChhh--------hHhhHHhhcc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPT----QYPTSEELSIGKIKFKAFDLGGHQI--------ARRVWKDYYA   86 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~   86 (193)
                      ...+|+|+|.+|||||||++++.+.......++    .+.......+.+..+.+|||||...        +......++.
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~  116 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR  116 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence            447899999999999999999998765433333    3334455566778899999999652        3344556678


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCc
Q 029437           87 KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVR  166 (193)
Q Consensus        87 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (193)
                      .+|++|+|+|+++..+..  ...+...+..   .++|+++|+||+|+.....  +..+.+....                
T Consensus       117 ~aD~il~VvD~~~~~s~~--~~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~g~----------------  173 (472)
T PRK03003        117 TADAVLFVVDATVGATAT--DEAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSLGL----------------  173 (472)
T ss_pred             hCCEEEEEEECCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhcCC----------------
Confidence            999999999999875432  1223333332   4799999999999864221  1111111111                


Q ss_pred             ceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          167 PLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       167 ~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                       -..+++||++|.|+++++++|.+.+
T Consensus       174 -~~~~~iSA~~g~gi~eL~~~i~~~l  198 (472)
T PRK03003        174 -GEPHPVSALHGRGVGDLLDAVLAAL  198 (472)
T ss_pred             -CCeEEEEcCCCCCcHHHHHHHHhhc
Confidence             1246999999999999999998765

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.90  E-value=8.5e-23  Score=161.48  Aligned_cols=146  Identities=20%  Similarity=0.244  Sum_probs=108.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc--ccC--CCCCcceeEEEeCCEEEEEEEcCChhhhHhh--------HHhh
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV--QHQ--PTQYPTSEELSIGKIKFKAFDLGGHQIARRV--------WKDY   84 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~   84 (193)
                      ....++|+++|.+|+|||||+|++++.+..  ...  .|.+.....+.+++..+.+|||||.......        ....
T Consensus       212 ~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        212 LREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             hhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            346689999999999999999999987642  222  2555566677788899999999997643321        2235


Q ss_pred             cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCC
Q 029437           85 YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSN  164 (193)
Q Consensus        85 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (193)
                      +..+|++++|+|++++.++... ..+..      ..+.|+++|+||+|+.......        ..              
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~-~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~--------------  342 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDD-EILEE------LKDKPVIVVLNKADLTGEIDLE--------EE--------------  342 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHH-HHHHh------cCCCCcEEEEEhhhccccchhh--------hc--------------
Confidence            6889999999999988765543 22222      3578999999999997432211        11              


Q ss_pred             CcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          165 VRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                       ...+++++||++|.|+++++++|.+.+
T Consensus       343 -~~~~~i~iSAktg~GI~~L~~~L~~~l  369 (449)
T PRK05291        343 -NGKPVIRISAKTGEGIDELREAIKELA  369 (449)
T ss_pred             -cCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence             224679999999999999999998754

>PRK11058 GTPase HflX; Provisional

Probab=99.90  E-value=2.1e-22  Score=157.70  Aligned_cols=151  Identities=19%  Similarity=0.196  Sum_probs=105.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCCE-EEEEEEcCChhh---------hHhhHHhhccc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGKI-KFKAFDLGGHQI---------ARRVWKDYYAK   87 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~-~~~~~D~~G~~~---------~~~~~~~~~~~   87 (193)
                      ++|+++|.+|||||||+|++++.+...   ...|.++....+.+.+. .+.+|||+|..+         +... ...+..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~t-l~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKAT-LQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHH-HHHhhc
Confidence            589999999999999999999876432   23567777777776654 889999999733         2221 233578


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437           88 VDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRP  167 (193)
Q Consensus        88 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (193)
                      +|++++|+|++++.+...... +..++......+.|+++|+||+|+..... ..... ..  .               ..
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~-v~~iL~el~~~~~pvIiV~NKiDL~~~~~-~~~~~-~~--~---------------~~  336 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEA-VNTVLEEIDAHEIPTLLVMNKIDMLDDFE-PRIDR-DE--E---------------NK  336 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHH-HHHHHHHhccCCCCEEEEEEcccCCCchh-HHHHH-Hh--c---------------CC
Confidence            999999999999876655532 22333333335799999999999964311 11110 00  0               00


Q ss_pred             eEEEEeeeecCCChhhHHHhhhhhc
Q 029437          168 LEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       168 ~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ..++.+||++|.|+++++++|.+.+
T Consensus       337 ~~~v~ISAktG~GIdeL~e~I~~~l  361 (426)
T PRK11058        337 PIRVWLSAQTGAGIPLLFQALTERL  361 (426)
T ss_pred             CceEEEeCCCCCCHHHHHHHHHHHh
Confidence            1247899999999999999998764

>cd01894 EngA1 EngA1 subfamily

Probab=99.90  E-value=1.1e-22  Score=139.80  Aligned_cols=145  Identities=21%  Similarity=0.224  Sum_probs=99.5

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCcc--ccC--CCCCcceeEEEeCCEEEEEEEcCChhhhHh--------hHHhhcccCCEE
Q 029437           24 LFLGLDNAGKTTLLHMLKDERLV--QHQ--PTQYPTSEELSIGKIKFKAFDLGGHQIARR--------VWKDYYAKVDAV   91 (193)
Q Consensus        24 ~v~G~~~~GKssl~~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~~~d~v   91 (193)
                      +++|.+|+|||||++++.+....  ...  .|...........+..+.+|||||......        .....+..+|++
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i   80 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI   80 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence            47899999999999999987532  121  233445556667788999999999876433        334456789999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      ++|+|+.+..+...  ..+...+..   .+.|+++++||+|+......   ...+.. .               ...+++
T Consensus        81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~---~~~~~~-~---------------~~~~~~  136 (157)
T cd01894          81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDE---AAEFYS-L---------------GFGEPI  136 (157)
T ss_pred             EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHH---HHHHHh-c---------------CCCCeE
Confidence            99999977543322  222233322   36999999999999743221   111110 0               112578


Q ss_pred             EeeeecCCChhhHHHhhhhhc
Q 029437          172 MCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       172 ~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++|+++|.|+++++++|.+.+
T Consensus       137 ~~Sa~~~~gv~~l~~~l~~~~  157 (157)
T cd01894         137 PISAEHGRGIGDLLDAILELL  157 (157)
T ss_pred             EEecccCCCHHHHHHHHHhhC
Confidence            999999999999999998764

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.90  E-value=3.9e-22  Score=142.03  Aligned_cols=145  Identities=23%  Similarity=0.222  Sum_probs=99.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc--CCccccC-----------------CCCCcceeEEEeCCEEEEEEEcCChhhhHhhHH
Q 029437           22 KILFLGLDNAGKTTLLHMLKD--ERLVQHQ-----------------PTQYPTSEELSIGKIKFKAFDLGGHQIARRVWK   82 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~--~~~~~~~-----------------~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~   82 (193)
                      +|+++|.+|+|||||++++..  ..+....                 .+.......+.+++..+.+|||||+..+.....
T Consensus         4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~   83 (194)
T cd01891           4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE   83 (194)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence            799999999999999999986  3333221                 122333445677889999999999999999888


Q ss_pred             hhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH---HHHHHhhC-CCccccCCCcc
Q 029437           83 DYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE---EELRYHLG-LSNFTTGKGKV  158 (193)
Q Consensus        83 ~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~---~~~~~~~~-~~~~~~~~~~~  158 (193)
                      .+++.+|++++|+|+++.. ......++.....    .++|+++++||+|+......   +++.+.+. ...        
T Consensus        84 ~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--------  150 (194)
T cd01891          84 RVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGA--------  150 (194)
T ss_pred             HHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCC--------
Confidence            9999999999999998742 2222333333322    37899999999999643221   12222221 000        


Q ss_pred             ccCCCCCcceEEEEeeeecCCChh
Q 029437          159 NLADSNVRPLEVFMCSIVRKMGYG  182 (193)
Q Consensus       159 ~~~~~~~~~~~~~~~Sa~~g~gv~  182 (193)
                         ......++++++||++|.|+.
T Consensus       151 ---~~~~~~~~iv~~Sa~~g~~~~  171 (194)
T cd01891         151 ---TEEQLDFPVLYASAKNGWASL  171 (194)
T ss_pred             ---ccccCccCEEEeehhcccccc
Confidence               000123578999999997763

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.90  E-value=1.2e-22  Score=139.87  Aligned_cols=139  Identities=19%  Similarity=0.197  Sum_probs=93.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCCh-----hhhHhhHHhhcccCCEEEEEEE
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGH-----QIARRVWKDYYAKVDAVVYLVD   96 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~-----~~~~~~~~~~~~~~d~vl~v~d   96 (193)
                      +|+++|.+|+|||||++++.+.. ...     .....+.+...  .+|||||.     ..++.+ ...+..+|++++|+|
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~-~~~-----~~~~~v~~~~~--~~iDtpG~~~~~~~~~~~~-~~~~~~ad~il~v~d   73 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNY-TLA-----RKTQAVEFNDK--GDIDTPGEYFSHPRWYHAL-ITTLQDVDMLIYVHG   73 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC-ccC-----ccceEEEECCC--CcccCCccccCCHHHHHHH-HHHHhcCCEEEEEEe
Confidence            79999999999999999987653 111     12223333322  37999997     222232 334689999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeee
Q 029437           97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIV  176 (193)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  176 (193)
                      +++..++.  ..++..+     ..+.|+++++||+|+.. ...+++.+......               ...+++++||+
T Consensus        74 ~~~~~s~~--~~~~~~~-----~~~~~ii~v~nK~Dl~~-~~~~~~~~~~~~~~---------------~~~p~~~~Sa~  130 (158)
T PRK15467         74 ANDPESRL--PAGLLDI-----GVSKRQIAVISKTDMPD-ADVAATRKLLLETG---------------FEEPIFELNSH  130 (158)
T ss_pred             CCCccccc--CHHHHhc-----cCCCCeEEEEEccccCc-ccHHHHHHHHHHcC---------------CCCCEEEEECC
Confidence            99876542  2232222     13679999999999864 33343333222111               12478999999


Q ss_pred             cCCChhhHHHhhhhhc
Q 029437          177 RKMGYGDGFKWLSQYI  192 (193)
Q Consensus       177 ~g~gv~el~~~i~~~~  192 (193)
                      +|.|++++|++|.+.+
T Consensus       131 ~g~gi~~l~~~l~~~~  146 (158)
T PRK15467        131 DPQSVQQLVDYLASLT  146 (158)
T ss_pred             CccCHHHHHHHHHHhc
Confidence            9999999999998765

>cd04163 Era Era subfamily

Probab=99.90  E-value=3e-22  Score=138.67  Aligned_cols=154  Identities=21%  Similarity=0.252  Sum_probs=103.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCEEEEEEEcCChhhhH--------hhHHhhcc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQIAR--------RVWKDYYA   86 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~~~~   86 (193)
                      ...+|+++|++|+|||||++++.+.+.....+    +...........+..+.+|||||.....        ......+.
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            35689999999999999999999887543222    1122223334456789999999964332        22334567


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC-CCCHHHHHHhhCCCccccCCCccccCCCCC
Q 029437           87 KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY-AASEEELRYHLGLSNFTTGKGKVNLADSNV  165 (193)
Q Consensus        87 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (193)
                      .+|++++|+|++++.  .....++...+..   .+.|+++++||+|+.. .....+....+....               
T Consensus        82 ~~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---------------  141 (168)
T cd04163          82 DVDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELG---------------  141 (168)
T ss_pred             hCCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhcc---------------
Confidence            899999999998872  1222233232222   2689999999999973 333333333333222               


Q ss_pred             cceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          166 RPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       166 ~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ...+++++|++++.|+++++++|.+.+
T Consensus       142 ~~~~~~~~s~~~~~~~~~l~~~l~~~~  168 (168)
T cd04163         142 PFAEIFPISALKGENVDELLEEIVKYL  168 (168)
T ss_pred             CCCceEEEEeccCCChHHHHHHHHhhC
Confidence            235789999999999999999998753

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.89  E-value=2e-22  Score=159.67  Aligned_cols=156  Identities=19%  Similarity=0.196  Sum_probs=108.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccC----CCCCcceeEEEeCCEEEEEEEcCChhhhHh----------h-HHh
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQ----PTQYPTSEELSIGKIKFKAFDLGGHQIARR----------V-WKD   83 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~----------~-~~~   83 (193)
                      ..++|+++|.+|+|||||++++++.+.....    .|.......+..++..+.+|||||..+...          . ...
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~  250 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK  250 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence            4589999999999999999999987643221    233444455666778999999999643221          1 123


Q ss_pred             hcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC-CCCCHHHHHHhhCCCccccCCCccccCC
Q 029437           84 YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP-YAASEEELRYHLGLSNFTTGKGKVNLAD  162 (193)
Q Consensus        84 ~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (193)
                      .++.+|++++|+|++++.+.+.. ..+.....    .+.|+++++||+|+. .....+++.+.+....            
T Consensus       251 ~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~------------  313 (429)
T TIGR03594       251 AIERADVVLLVLDATEGITEQDL-RIAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKL------------  313 (429)
T ss_pred             HHHhCCEEEEEEECCCCccHHHH-HHHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhc------------
Confidence            56889999999999987654433 33333322    378999999999997 2222333433333222            


Q ss_pred             CCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          163 SNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       163 ~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                      .....++++++||++|.|++++|++|.+.
T Consensus       314 ~~~~~~~vi~~SA~~g~~v~~l~~~i~~~  342 (429)
T TIGR03594       314 PFLDFAPIVFISALTGQGVDKLLDAIDEV  342 (429)
T ss_pred             ccCCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence            01134689999999999999999998764

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.89  E-value=4.5e-22  Score=156.65  Aligned_cols=148  Identities=22%  Similarity=0.215  Sum_probs=105.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCEEEEEEEcCChhhhHhh--------HHhh
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGHQIARRV--------WKDY   84 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~   84 (193)
                      ....++|+++|+||+|||||+|++++.+..  ...|  |.+.....+.+++..+.+|||||.......        ...+
T Consensus       200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            457799999999999999999999987643  2222  334445667788899999999998543321        2356


Q ss_pred             cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCC
Q 029437           85 YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSN  164 (193)
Q Consensus        85 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (193)
                      ++.+|++++|+|++++.+....  ++....    ..+.|+++|+||+|+... ...++.+.                   
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~----~~~~piIlV~NK~Dl~~~-~~~~~~~~-------------------  333 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF--LIIDLN----KSKKPFILVLNKIDLKIN-SLEFFVSS-------------------  333 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH--HHHHHh----hCCCCEEEEEECccCCCc-chhhhhhh-------------------
Confidence            7899999999999988766543  444432    247899999999999643 22111111                   


Q ss_pred             CcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          165 VRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                       ...+++.+||++ .|++++++.|.+.+
T Consensus       334 -~~~~~~~vSak~-~gI~~~~~~L~~~i  359 (442)
T TIGR00450       334 -KVLNSSNLSAKQ-LKIKALVDLLTQKI  359 (442)
T ss_pred             -cCCceEEEEEec-CCHHHHHHHHHHHH
Confidence             113568999998 58988888887654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.89  E-value=2.5e-22  Score=142.26  Aligned_cols=162  Identities=20%  Similarity=0.185  Sum_probs=112.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc---------------------ccCCCCCcceeEEE--eCCEEEEEEEcCChh
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLV---------------------QHQPTQYPTSEELS--IGKIKFKAFDLGGHQ   75 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~---------------------~~~~t~~~~~~~~~--~~~~~~~~~D~~G~~   75 (193)
                      +..+|+++|+.++|||||+.+|....-.                     ....|.......+.  .....++++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            4578999999999999999999744311                     12235556666777  788999999999999


Q ss_pred             hhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCC
Q 029437           76 IARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGK  155 (193)
Q Consensus        76 ~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  155 (193)
                      .+.......+..+|++++|+|+.+.-. ....+.+.....    .++|+++++||+|+. .....+..+++...+.+...
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~-~~~~~~l~~~~~----~~~p~ivvlNK~D~~-~~~~~~~~~~~~~~l~~~~~  155 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQ-PQTEEHLKILRE----LGIPIIVVLNKMDLI-EKELEEIIEEIKEKLLKEYG  155 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBST-HHHHHHHHHHHH----TT-SEEEEEETCTSS-HHHHHHHHHHHHHHHHHHTT
T ss_pred             ceeecccceecccccceeeeecccccc-cccccccccccc----cccceEEeeeeccch-hhhHHHHHHHHHHHhccccc
Confidence            998888888899999999999987633 233334444433    488999999999997 21222222222211110000


Q ss_pred             CccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          156 GKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ..      ....++++++||.+|.|+++|++.|.+.+
T Consensus       156 ~~------~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  156 EN------GEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             ST------TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             cC------ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence            00      00247999999999999999999998875

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd01895 EngA2 EngA2 subfamily

Probab=99.89  E-value=1.1e-21  Score=136.76  Aligned_cols=155  Identities=16%  Similarity=0.195  Sum_probs=103.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc--cCC--CCCcceeEEEeCCEEEEEEEcCChhhh----------Hhh-HHhh
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQ--HQP--TQYPTSEELSIGKIKFKAFDLGGHQIA----------RRV-WKDY   84 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~-~~~~   84 (193)
                      .++|+++|++|+|||||++++.+.....  ..+  +.......+..++..+.+|||||....          ... ....
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~   81 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA   81 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence            4789999999999999999998876432  112  223334455667778999999996332          111 1234


Q ss_pred             cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCC
Q 029437           85 YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLAD  162 (193)
Q Consensus        85 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (193)
                      +..+|++++|+|+.++.+.... ..+.....    .+.|+++++||+|+...  ...+++........            
T Consensus        82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~------------  144 (174)
T cd01895          82 IERADVVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKL------------  144 (174)
T ss_pred             HhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhc------------
Confidence            5789999999999887654332 23333222    36899999999999754  23333333332221            


Q ss_pred             CCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          163 SNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       163 ~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                      ......+++++||++|.|++++++++.+.
T Consensus       145 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         145 PFLDYAPIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             ccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence            00123579999999999999999998763

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.89  E-value=3.3e-22  Score=144.96  Aligned_cols=172  Identities=26%  Similarity=0.259  Sum_probs=117.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCCcceeEE-Ee-C--CEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQYPTSEEL-SI-G--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~t~~~~~~~~-~~-~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      ..++|+++|++|||||||++++.+..+.... +|........ .. .  ..++.+|||+|++.++.++..++..++++++
T Consensus         4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~   83 (219)
T COG1100           4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI   83 (219)
T ss_pred             ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence            3489999999999999999999999988633 4444322221 11 1  5789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHH-HHHHhhC-CCccccCCCccccCCCCCcceEEE
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEE-ELRYHLG-LSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      |+|..+..++.+..+.|...+......+.|+++++||+|+....... .+...+. ............ .... ....++
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~  161 (219)
T COG1100          84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAV-LPEV-ANPALL  161 (219)
T ss_pred             EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHh-hhhh-ccccee
Confidence            99999965555555555544444333579999999999998543322 2333221 111000000000 0000 122389


Q ss_pred             Eeeee--cCCChhhHHHhhhhhc
Q 029437          172 MCSIV--RKMGYGDGFKWLSQYI  192 (193)
Q Consensus       172 ~~Sa~--~g~gv~el~~~i~~~~  192 (193)
                      +||++  ++.+++++|..+...+
T Consensus       162 ~~s~~~~~~~~v~~~~~~~~~~~  184 (219)
T COG1100         162 ETSAKSLTGPNVNELFKELLRKL  184 (219)
T ss_pred             EeecccCCCcCHHHHHHHHHHHH
Confidence            99999  9999999998877654

>PLN00023 GTP-binding protein; Provisional

Probab=99.89  E-value=3.5e-22  Score=149.19  Aligned_cols=119  Identities=19%  Similarity=0.345  Sum_probs=98.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEe---------------CCEEEEEEEcCChhhhH
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSI---------------GKIKFKAFDLGGHQIAR   78 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~---------------~~~~~~~~D~~G~~~~~   78 (193)
                      ....+||+++|+.|||||||++++.+..|.. ..+|++...  ..+.+               ..+.+.+|||+|++.++
T Consensus        18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr   97 (334)
T PLN00023         18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK   97 (334)
T ss_pred             CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence            4577999999999999999999999988765 456776543  33333               23679999999999999


Q ss_pred             hhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCC-----------CCCCcEEEEEeCCCCCC
Q 029437           79 RVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEA-----------LANVPFLVLGNKIDIPY  135 (193)
Q Consensus        79 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~pviiv~nK~D~~~  135 (193)
                      .++..++++++++|+|+|++++.+++++..|+..+.....           ..++|+++|+||+|+..
T Consensus        98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~  165 (334)
T PLN00023         98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP  165 (334)
T ss_pred             hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence            9999999999999999999999999999999988865321           13589999999999963

>COG1159 Era GTPase [General function prediction only]

Probab=99.89  E-value=5.2e-22  Score=144.67  Aligned_cols=155  Identities=19%  Similarity=0.212  Sum_probs=112.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCEEEEEEEcCChhh--------hHhhHHhhcc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQI--------ARRVWKDYYA   86 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~   86 (193)
                      +.--++++|.||+|||||+|++.+.+.+-..+    |...-.+-+..++..+.++||||...        +.......+.
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~   84 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK   84 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence            33469999999999999999999998765433    44444555666788999999999432        2233345568


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC-HHHHHHhhCCCccccCCCccccCCCCC
Q 029437           87 KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGKGKVNLADSNV  165 (193)
Q Consensus        87 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (193)
                      .+|++++|+|+.++-.  .-+++..+.+..   .+.|+++++||+|...... ...+.+.+....               
T Consensus        85 dvDlilfvvd~~~~~~--~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~---------------  144 (298)
T COG1159          85 DVDLILFVVDADEGWG--PGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLL---------------  144 (298)
T ss_pred             cCcEEEEEEeccccCC--ccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhC---------------
Confidence            9999999999987532  233444444332   4789999999999985544 334444444333               


Q ss_pred             cceEEEEeeeecCCChhhHHHhhhhhcC
Q 029437          166 RPLEVFMCSIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       166 ~~~~~~~~Sa~~g~gv~el~~~i~~~~~  193 (193)
                      ....++++||++|.|++.|.+.|..++.
T Consensus       145 ~f~~ivpiSA~~g~n~~~L~~~i~~~Lp  172 (298)
T COG1159         145 PFKEIVPISALKGDNVDTLLEIIKEYLP  172 (298)
T ss_pred             CcceEEEeeccccCCHHHHHHHHHHhCC
Confidence            4458999999999999999999988763

>PRK00089 era GTPase Era; Reviewed

Probab=99.89  E-value=6.4e-22  Score=149.29  Aligned_cols=152  Identities=19%  Similarity=0.209  Sum_probs=102.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccCCCC---Ccce-eEEEeCCEEEEEEEcCChhhh--------HhhHHhhcccC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ---YPTS-EELSIGKIKFKAFDLGGHQIA--------RRVWKDYYAKV   88 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~---~~~~-~~~~~~~~~~~~~D~~G~~~~--------~~~~~~~~~~~   88 (193)
                      -.|+++|+||||||||+|++++.+.....+..   .... .....++..+.++||||....        .......+..+
T Consensus         6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~   85 (292)
T PRK00089          6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDV   85 (292)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcC
Confidence            46999999999999999999988765433222   2222 222335579999999996432        22233456789


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437           89 DAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADSNVRP  167 (193)
Q Consensus        89 d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (193)
                      |++++|+|+++.  +.....++...+.   ..+.|+++++||+|+... ....+..+.+....               ..
T Consensus        86 D~il~vvd~~~~--~~~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~---------------~~  145 (292)
T PRK00089         86 DLVLFVVDADEK--IGPGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELM---------------DF  145 (292)
T ss_pred             CEEEEEEeCCCC--CChhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhC---------------CC
Confidence            999999999883  2222233333332   247899999999999732 22222333332211               23


Q ss_pred             eEEEEeeeecCCChhhHHHhhhhhc
Q 029437          168 LEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       168 ~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .+++++||++|.|+++++++|.+.+
T Consensus       146 ~~i~~iSA~~~~gv~~L~~~L~~~l  170 (292)
T PRK00089        146 AEIVPISALKGDNVDELLDVIAKYL  170 (292)
T ss_pred             CeEEEecCCCCCCHHHHHHHHHHhC
Confidence            5789999999999999999998765

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.89  E-value=3.5e-22  Score=143.11  Aligned_cols=159  Identities=18%  Similarity=0.094  Sum_probs=99.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCc--cc----cCCCCCcceeEEEe---------------------------------
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERL--VQ----HQPTQYPTSEELSI---------------------------------   61 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~--~~----~~~t~~~~~~~~~~---------------------------------   61 (193)
                      ++|+++|+.|+|||||+.++.+...  ..    ...+.......+.+                                 
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            4799999999999999999975521  11    11111111111111                                 


Q ss_pred             CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH
Q 029437           62 GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE  141 (193)
Q Consensus        62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~  141 (193)
                      ....+.+|||||++.+.......+..+|++++|+|++++.........+..+. ..  ...|+++++||+|+.......+
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~-~~--~~~~iiivvNK~Dl~~~~~~~~  157 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALE-IM--GLKHIIIVQNKIDLVKEEQALE  157 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHH-Hc--CCCcEEEEEEchhccCHHHHHH
Confidence            12679999999999887777777788999999999987421112222222221 11  2357999999999974322222


Q ss_pred             HHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          142 LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ..+.+.... .         ......++++++||++|.|+++++++|.+.+
T Consensus       158 ~~~~i~~~~-~---------~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         158 NYEQIKKFV-K---------GTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHHHH-h---------ccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            111111100 0         0001235789999999999999999998865

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=5.3e-22  Score=156.58  Aligned_cols=155  Identities=24%  Similarity=0.270  Sum_probs=106.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCCEEEEEEEcCChhh----h---HhhHHhhcccCCE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGKIKFKAFDLGGHQI----A---RRVWKDYYAKVDA   90 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~G~~~----~---~~~~~~~~~~~d~   90 (193)
                      ..|+|+|.||||||||+++|++.....   ..+|..++...+.+.+..+.+||+||...    .   ...+...+..+|+
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradv  239 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAV  239 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCE
Confidence            579999999999999999999765431   23577888888998889999999999532    1   1122234578999


Q ss_pred             EEEEEECCCh----hhHHHHHHHHHHHHcCC----------CCCCCcEEEEEeCCCCCCCCCHHH-HHHhhCCCccccCC
Q 029437           91 VVYLVDAYDK----ERFAESKKELDALLSDE----------ALANVPFLVLGNKIDIPYAASEEE-LRYHLGLSNFTTGK  155 (193)
Q Consensus        91 vl~v~d~~~~----~~~~~~~~~~~~~~~~~----------~~~~~pviiv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~  155 (193)
                      +++|+|+++.    +.+.....+..++....          ...+.|+++|+||+|++......+ +...+.  .     
T Consensus       240 Lv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~--~-----  312 (500)
T PRK12296        240 LVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELE--A-----  312 (500)
T ss_pred             EEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHH--H-----
Confidence            9999999752    23333333333332111          235789999999999964322221 111111  0     


Q ss_pred             CccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          156 GKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                                ..++++++||+++.|+++++++|.+.+
T Consensus       313 ----------~g~~Vf~ISA~tgeGLdEL~~~L~ell  339 (500)
T PRK12296        313 ----------RGWPVFEVSAASREGLRELSFALAELV  339 (500)
T ss_pred             ----------cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence                      124789999999999999999998764

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.88  E-value=2.5e-21  Score=131.30  Aligned_cols=158  Identities=23%  Similarity=0.253  Sum_probs=126.3

Q ss_pred             CCCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-------------CCCCCcceeEEEeCC-EEEEEEEcCChhhhHhh
Q 029437           15 GLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-------------QPTQYPTSEELSIGK-IKFKAFDLGGHQIARRV   80 (193)
Q Consensus        15 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-------------~~t~~~~~~~~~~~~-~~~~~~D~~G~~~~~~~   80 (193)
                      ...+...+|+|+|+.++||||++++++.......             ..|+....+.+...+ ..+.+++||||+++..+
T Consensus         5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm   84 (187)
T COG2229           5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFM   84 (187)
T ss_pred             cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHH
Confidence            3456788999999999999999999987663211             124444555666554 89999999999999999


Q ss_pred             HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCcccc
Q 029437           81 WKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNL  160 (193)
Q Consensus        81 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (193)
                      +....+.+.+.++++|.+.+..+ +....+..+ ....  .+|+++.+||.|+.++.+++++.+.+....          
T Consensus        85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~-~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~----------  150 (187)
T COG2229          85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFL-TSRN--PIPVVVAINKQDLFDALPPEKIREALKLEL----------  150 (187)
T ss_pred             HHHHhCCcceEEEEEecCCCcch-HHHHHHHHH-hhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhcc----------
Confidence            99999999999999999999877 333443333 3322  299999999999999999999999998774          


Q ss_pred             CCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          161 ADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       161 ~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                           ...++++.+|.+++|..+.++.+...
T Consensus       151 -----~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         151 -----LSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             -----CCCceeeeecccchhHHHHHHHHHhh
Confidence                 34789999999999999988877654

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.88  E-value=2.2e-21  Score=153.75  Aligned_cols=147  Identities=21%  Similarity=0.235  Sum_probs=105.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccc--c--CCCCCcceeEEEeCCEEEEEEEcCCh--------hhhHhhHHhhcccCC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQ--H--QPTQYPTSEELSIGKIKFKAFDLGGH--------QIARRVWKDYYAKVD   89 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~--~--~~t~~~~~~~~~~~~~~~~~~D~~G~--------~~~~~~~~~~~~~~d   89 (193)
                      +|+++|.+|+|||||+|++.+.....  .  ..|.+.....+.+.+..+.+|||||.        ..+.......++.+|
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad   80 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD   80 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence            48999999999999999999877432  2  22455666777888899999999995        344555566778999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           90 AVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        90 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++++|+|+.++.+.  ....+..++..   .++|+++++||+|+......  ..+....                 ...+
T Consensus        81 ~vl~vvD~~~~~~~--~d~~i~~~l~~---~~~piilVvNK~D~~~~~~~--~~~~~~l-----------------g~~~  136 (429)
T TIGR03594        81 VILFVVDGREGLTP--EDEEIAKWLRK---SGKPVILVANKIDGKKEDAV--AAEFYSL-----------------GFGE  136 (429)
T ss_pred             EEEEEEeCCCCCCH--HHHHHHHHHHH---hCCCEEEEEECccCCccccc--HHHHHhc-----------------CCCC
Confidence            99999999875322  22223333322   37899999999998743221  1111111                 1235


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++++||++|.|++++++++.+.+
T Consensus       137 ~~~vSa~~g~gv~~ll~~i~~~l  159 (429)
T TIGR03594       137 PIPISAEHGRGIGDLLDAILELL  159 (429)
T ss_pred             eEEEeCCcCCChHHHHHHHHHhc
Confidence            79999999999999999998765

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.88  E-value=2.5e-21  Score=157.36  Aligned_cols=149  Identities=20%  Similarity=0.212  Sum_probs=106.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC-------cccc-----------CCCCCcceeEEEeC-----CEEEEEEEcCChhhhH
Q 029437           22 KILFLGLDNAGKTTLLHMLKDER-------LVQH-----------QPTQYPTSEELSIG-----KIKFKAFDLGGHQIAR   78 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~-------~~~~-----------~~t~~~~~~~~~~~-----~~~~~~~D~~G~~~~~   78 (193)
                      +|+++|++++|||||++++....       +...           ..|.......+.+.     .+.+++|||||+..+.
T Consensus         5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~   84 (595)
T TIGR01393         5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS   84 (595)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence            79999999999999999997642       1111           11222222333332     3789999999999999


Q ss_pred             hhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH---HHHHHhhCCCccccCC
Q 029437           79 RVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE---EELRYHLGLSNFTTGK  155 (193)
Q Consensus        79 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~  155 (193)
                      .....++..+|++++|+|+++..+.+....++... .    .++|+++++||+|+......   +++.+.++...     
T Consensus        85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~-----  154 (595)
T TIGR01393        85 YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIGLDA-----  154 (595)
T ss_pred             HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCc-----
Confidence            88888999999999999999875555544443322 2    37899999999998643211   22333333211     


Q ss_pred             CccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          156 GKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                                  ..++++||++|.|+++++++|.+.+
T Consensus       155 ------------~~vi~vSAktG~GI~~Lle~I~~~l  179 (595)
T TIGR01393       155 ------------SEAILASAKTGIGIEEILEAIVKRV  179 (595)
T ss_pred             ------------ceEEEeeccCCCCHHHHHHHHHHhC
Confidence                        3579999999999999999998764

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=9.3e-22  Score=136.17  Aligned_cols=171  Identities=22%  Similarity=0.312  Sum_probs=134.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcc---cCCEEEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYA---KVDAVVYL   94 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~---~~d~vl~v   94 (193)
                      .....++++|+.+||||+|+.+|..+.+....+...++......+.-..+++|.|||.+.+.-..++++   .+-++++|
T Consensus        36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFV  115 (238)
T KOG0090|consen   36 SKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFV  115 (238)
T ss_pred             ccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEE
Confidence            334689999999999999999999999888888999999999998888999999999999988887777   78999999


Q ss_pred             EECCC-hhhHHHHHHHHHHHHcCC--CCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccc----cC-------------
Q 029437           95 VDAYD-KERFAESKKELDALLSDE--ALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFT----TG-------------  154 (193)
Q Consensus        95 ~d~~~-~~~~~~~~~~~~~~~~~~--~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~-------------  154 (193)
                      +|+.. ....+...+++..++...  .....|+++++||.|+..+.+++-++++++.....    ..             
T Consensus       116 VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~  195 (238)
T KOG0090|consen  116 VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKD  195 (238)
T ss_pred             EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Confidence            99854 334677778887776544  35689999999999999888877776666533221    00             


Q ss_pred             -------C--CccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          155 -------K--GKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       155 -------~--~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                             .  ..+.+.+   ..+.+.++|+++| +++++-+||.+++
T Consensus       196 ~tlg~~g~dF~fs~l~~---~~V~F~e~S~~~~-~i~~~~~wi~~~l  238 (238)
T KOG0090|consen  196 FTLGKEGEDFKFSHLED---QKVTFAEASAKTG-EIDQWESWIREAL  238 (238)
T ss_pred             ccccccccccchhhccc---ceeEEeecccCcC-ChHHHHHHHHHhC
Confidence                   0  0011111   3577899999999 9999999998764

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=2.2e-21  Score=151.21  Aligned_cols=152  Identities=21%  Similarity=0.271  Sum_probs=104.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc--c-cCCCCCcceeEEEeC-CEEEEEEEcCChhh----h---HhhHHhhcccCCE
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLV--Q-HQPTQYPTSEELSIG-KIKFKAFDLGGHQI----A---RRVWKDYYAKVDA   90 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~--~-~~~t~~~~~~~~~~~-~~~~~~~D~~G~~~----~---~~~~~~~~~~~d~   90 (193)
                      .|+++|.||||||||++++++....  . ..+|..++...+.+. +..+.+||+||...    .   ...+...+.++++
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l  239 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV  239 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence            7999999999999999999987632  1 234667777777776 68999999999632    1   1222233567999


Q ss_pred             EEEEEECCCh---hhHHHHHHHHHHHHcC-CCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCc
Q 029437           91 VVYLVDAYDK---ERFAESKKELDALLSD-EALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVR  166 (193)
Q Consensus        91 vl~v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (193)
                      +++|+|+++.   +.++....+..++... ....+.|+++|+||+|+...  .+.+ +.+....               .
T Consensus       240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l-~~l~~~l---------------~  301 (424)
T PRK12297        240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENL-EEFKEKL---------------G  301 (424)
T ss_pred             EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHH-HHHHHHh---------------C
Confidence            9999999764   4455554444444221 12357999999999998422  1111 1111111               1


Q ss_pred             ceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          167 PLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       167 ~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                       .+++++||+++.|+++++++|.+.+
T Consensus       302 -~~i~~iSA~tgeGI~eL~~~L~~~l  326 (424)
T PRK12297        302 -PKVFPISALTGQGLDELLYAVAELL  326 (424)
T ss_pred             -CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence             3579999999999999999998754

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.88  E-value=2.7e-21  Score=156.58  Aligned_cols=159  Identities=20%  Similarity=0.196  Sum_probs=111.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccC---CCCCcceeEEEeCCE-EEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ---PTQYPTSEELSIGKI-KFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~---~t~~~~~~~~~~~~~-~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      .+..+|+++|++++|||||++++.+..+....   .|.......+.+.+. .+.+|||||+..+..++...+..+|++++
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            35579999999999999999999887765432   244444455565444 89999999999999988888899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      |+|+++....+ ..+.+...    ...++|+++++||+|+... ..+++...+.....        ....+....+++++
T Consensus       165 VVda~dgv~~q-T~e~i~~~----~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~--------~~~~~~~~~~~v~i  230 (587)
T TIGR00487       165 VVAADDGVMPQ-TIEAISHA----KAANVPIIVAINKIDKPEA-NPDRVKQELSEYGL--------VPEDWGGDTIFVPV  230 (587)
T ss_pred             EEECCCCCCHh-HHHHHHHH----HHcCCCEEEEEECcccccC-CHHHHHHHHHHhhh--------hHHhcCCCceEEEE
Confidence            99998742211 11222222    2247899999999999643 34444444321110        00111123578999


Q ss_pred             eeecCCChhhHHHhhhh
Q 029437          174 SIVRKMGYGDGFKWLSQ  190 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~  190 (193)
                      ||++|.|+++++++|..
T Consensus       231 SAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       231 SALTGDGIDELLDMILL  247 (587)
T ss_pred             ECCCCCChHHHHHhhhh
Confidence            99999999999999854

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.88  E-value=2e-21  Score=138.47  Aligned_cols=159  Identities=18%  Similarity=0.219  Sum_probs=101.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcceeEE-EeCCEEEEEEEcCCh----------hhhHhhHHhh
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQYPTSEEL-SIGKIKFKAFDLGGH----------QIARRVWKDY   84 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~-~~~~~~~~~~D~~G~----------~~~~~~~~~~   84 (193)
                      ....++|+++|++|+|||||++++.+.++. ...++.+.+.... ...+..+.+|||||.          ..+..+...+
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~  100 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEY  100 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHH
Confidence            346689999999999999999999987643 3334443222111 111368999999994          3344444444


Q ss_pred             cc---cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccC
Q 029437           85 YA---KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLA  161 (193)
Q Consensus        85 ~~---~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (193)
                      +.   ..+++++|+|+.++.+...  ..+...+..   .+.|+++++||+|+......++..+.+....           
T Consensus       101 ~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l-----------  164 (196)
T PRK00454        101 LRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKAL-----------  164 (196)
T ss_pred             HHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHH-----------
Confidence            44   3467888999877533221  222222222   3789999999999974433333222221111           


Q ss_pred             CCCCcceEEEEeeeecCCChhhHHHhhhhhcC
Q 029437          162 DSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       162 ~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~~  193 (193)
                      ..  ....++++||++|.|+++++++|.+.++
T Consensus       165 ~~--~~~~~~~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        165 KF--GDDEVILFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             Hh--cCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence            00  1256889999999999999999988764

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=3.3e-21  Score=152.93  Aligned_cols=146  Identities=23%  Similarity=0.252  Sum_probs=103.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc--cC--CCCCcceeEEEeCCEEEEEEEcCChhh--------hHhhHHhhcccC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ--HQ--PTQYPTSEELSIGKIKFKAFDLGGHQI--------ARRVWKDYYAKV   88 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~--~~--~t~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~~~   88 (193)
                      ++|+++|.+|+|||||++++.+.....  ..  .|.+.....+.+.+..+.+|||||...        +.......+..+
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a   81 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA   81 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence            589999999999999999999877432  22  244556667788889999999999876        233345567899


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437           89 DAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPL  168 (193)
Q Consensus        89 d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (193)
                      |++++|+|+.++.+.  ....+..++..   .+.|+++++||+|+...  .....+......                 .
T Consensus        82 d~il~vvd~~~~~~~--~~~~~~~~l~~---~~~piilv~NK~D~~~~--~~~~~~~~~lg~-----------------~  137 (435)
T PRK00093         82 DVILFVVDGRAGLTP--ADEEIAKILRK---SNKPVILVVNKVDGPDE--EADAYEFYSLGL-----------------G  137 (435)
T ss_pred             CEEEEEEECCCCCCH--HHHHHHHHHHH---cCCcEEEEEECccCccc--hhhHHHHHhcCC-----------------C
Confidence            999999999875332  22222233322   27899999999997531  122222222111                 2


Q ss_pred             EEEEeeeecCCChhhHHHhhhh
Q 029437          169 EVFMCSIVRKMGYGDGFKWLSQ  190 (193)
Q Consensus       169 ~~~~~Sa~~g~gv~el~~~i~~  190 (193)
                      .++++||++|.|+++++++|.+
T Consensus       138 ~~~~iSa~~g~gv~~l~~~I~~  159 (435)
T PRK00093        138 EPYPISAEHGRGIGDLLDAILE  159 (435)
T ss_pred             CCEEEEeeCCCCHHHHHHHHHh
Confidence            3689999999999999999976

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.87  E-value=3.1e-21  Score=147.89  Aligned_cols=148  Identities=22%  Similarity=0.236  Sum_probs=112.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc----cCCCCCcceeEEEeCCEEEEEEEcCChhh---------hHhhHHhhccc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ----HQPTQYPTSEELSIGKIKFKAFDLGGHQI---------ARRVWKDYYAK   87 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~G~~~---------~~~~~~~~~~~   87 (193)
                      ..|+++|.||+|||||+|+|++...+-    ...|.+..+...++.+..+.++||+|.+.         ........+..
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e   83 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE   83 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence            679999999999999999999988653    33478888999999999999999999542         22334455679


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437           88 VDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRP  167 (193)
Q Consensus        88 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (193)
                      +|++|||+|....  .+..++.+..++..   .++|+++|+||+|...  ..+...+.+.+.+                 
T Consensus        84 ADvilfvVD~~~G--it~~D~~ia~~Lr~---~~kpviLvvNK~D~~~--~e~~~~efyslG~-----------------  139 (444)
T COG1160          84 ADVILFVVDGREG--ITPADEEIAKILRR---SKKPVILVVNKIDNLK--AEELAYEFYSLGF-----------------  139 (444)
T ss_pred             CCEEEEEEeCCCC--CCHHHHHHHHHHHh---cCCCEEEEEEcccCch--hhhhHHHHHhcCC-----------------
Confidence            9999999999764  23344444444432   4799999999999862  2233444444444                 


Q ss_pred             eEEEEeeeecCCChhhHHHhhhhhc
Q 029437          168 LEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       168 ~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      -+.+.+||.+|.|+.+|++++.+.+
T Consensus       140 g~~~~ISA~Hg~Gi~dLld~v~~~l  164 (444)
T COG1160         140 GEPVPISAEHGRGIGDLLDAVLELL  164 (444)
T ss_pred             CCceEeehhhccCHHHHHHHHHhhc
Confidence            3578999999999999999998764

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.87  E-value=1.5e-21  Score=161.61  Aligned_cols=160  Identities=19%  Similarity=0.164  Sum_probs=113.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc---CCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH---QPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      ......|+|+|++++|||||++++....+...   ..|.......+.+.+..+++|||||+..|..++...+..+|++++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL  366 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL  366 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence            34668999999999999999999987665432   124444455677778899999999999999988888899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      |+|+++...- +..+.+...    ...++|+|+++||+|+... ..+++..++....        .++..+...++++++
T Consensus       367 VVdAddGv~~-qT~e~i~~a----~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~--------~~~e~~g~~vp~vpv  432 (787)
T PRK05306        367 VVAADDGVMP-QTIEAINHA----KAAGVPIIVAINKIDKPGA-NPDRVKQELSEYG--------LVPEEWGGDTIFVPV  432 (787)
T ss_pred             EEECCCCCCH-hHHHHHHHH----HhcCCcEEEEEECcccccc-CHHHHHHHHHHhc--------ccHHHhCCCceEEEE
Confidence            9999874221 111222222    2247999999999999643 3444433332110        011111234689999


Q ss_pred             eeecCCChhhHHHhhhh
Q 029437          174 SIVRKMGYGDGFKWLSQ  190 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~  190 (193)
                      ||++|.|+++++++|..
T Consensus       433 SAktG~GI~eLle~I~~  449 (787)
T PRK05306        433 SAKTGEGIDELLEAILL  449 (787)
T ss_pred             eCCCCCCchHHHHhhhh
Confidence            99999999999999864

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.87  E-value=3.1e-21  Score=135.72  Aligned_cols=144  Identities=21%  Similarity=0.305  Sum_probs=92.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccee--EEEeCCEEEEEEEcCChh----------hhHhhHHhh
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQYPTSE--ELSIGKIKFKAFDLGGHQ----------IARRVWKDY   84 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~--~~~~~~~~~~~~D~~G~~----------~~~~~~~~~   84 (193)
                      ...++|+++|++|+|||||++++.+..+. ...++.+.+..  ....+ ..+.+|||||..          .+..+...+
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   94 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEY   94 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence            56789999999999999999999987633 33334433221  22223 378999999942          233333344


Q ss_pred             cc---cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHH----HHHHhhCCCccccCCCc
Q 029437           85 YA---KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEE----ELRYHLGLSNFTTGKGK  157 (193)
Q Consensus        85 ~~---~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~  157 (193)
                      ++   .++++++|+|++++-+.... ..+. .+..   .+.|+++++||+|+......+    ++.+.+....       
T Consensus        95 l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~-~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~-------  162 (179)
T TIGR03598        95 LEKRENLKGVVLLMDIRHPLKELDL-EMLE-WLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDA-------  162 (179)
T ss_pred             HHhChhhcEEEEEecCCCCCCHHHH-HHHH-HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc-------
Confidence            44   46899999999875333222 2222 2222   378999999999997433222    2333332211       


Q ss_pred             cccCCCCCcceEEEEeeeecCCChh
Q 029437          158 VNLADSNVRPLEVFMCSIVRKMGYG  182 (193)
Q Consensus       158 ~~~~~~~~~~~~~~~~Sa~~g~gv~  182 (193)
                              ...+++++||++|+|++
T Consensus       163 --------~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       163 --------DDPSVQLFSSLKKTGID  179 (179)
T ss_pred             --------CCCceEEEECCCCCCCC
Confidence                    23479999999999984

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.87  E-value=4.8e-22  Score=130.74  Aligned_cols=109  Identities=26%  Similarity=0.345  Sum_probs=79.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcc----eeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPT----SEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL   94 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~----~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v   94 (193)
                      ||+|+|++|||||||++++.+..+..   ..++....    ...+......+.+||++|++.+.......+..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            79999999999999999999988771   11222222    223333445689999999988877666668999999999


Q ss_pred             EECCChhhHHHHHHH---HHHHHcCCCCCCCcEEEEEeCCC
Q 029437           95 VDAYDKERFAESKKE---LDALLSDEALANVPFLVLGNKID  132 (193)
Q Consensus        95 ~d~~~~~~~~~~~~~---~~~~~~~~~~~~~pviiv~nK~D  132 (193)
                      +|++++.+++.+.++   +..+-.  ...++|+++++||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~--~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRK--RDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHH--HSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHc--cCCCCCEEEEEeccC
Confidence            999999999887655   333322  234699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=4.7e-21  Score=148.58  Aligned_cols=157  Identities=19%  Similarity=0.191  Sum_probs=106.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc-c--cCCCCCcceeEEEeCC-EEEEEEEcCChhhh-------HhhHHhhcccCCE
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLV-Q--HQPTQYPTSEELSIGK-IKFKAFDLGGHQIA-------RRVWKDYYAKVDA   90 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~~-------~~~~~~~~~~~d~   90 (193)
                      .|+|+|.||||||||+|++++.... .  ...|..+....+.+.+ ..+.++||||...-       ...+...+..+|+
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv  240 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV  240 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence            6999999999999999999976532 1  2346777777777765 46999999996431       1222235688999


Q ss_pred             EEEEEECC---ChhhHHHHHHHHHHHHcC-CCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCc
Q 029437           91 VVYLVDAY---DKERFAESKKELDALLSD-EALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVR  166 (193)
Q Consensus        91 vl~v~d~~---~~~~~~~~~~~~~~~~~~-~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (193)
                      +++|+|++   +.+.++....+..++... ....+.|+++|+||+|+.......+....+....              ..
T Consensus       241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~--------------~~  306 (390)
T PRK12298        241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEAL--------------GW  306 (390)
T ss_pred             EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHh--------------CC
Confidence            99999997   344455555555554321 1224789999999999964322222222211111              01


Q ss_pred             ceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          167 PLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       167 ~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ...++++||+++.|+++++++|.+.+
T Consensus       307 ~~~Vi~ISA~tg~GIdeLl~~I~~~L  332 (390)
T PRK12298        307 EGPVYLISAASGLGVKELCWDLMTFI  332 (390)
T ss_pred             CCCEEEEECCCCcCHHHHHHHHHHHh
Confidence            12578999999999999999998765

>cd00880 Era_like Era (E

Probab=99.87  E-value=3e-21  Score=132.45  Aligned_cols=151  Identities=25%  Similarity=0.230  Sum_probs=102.8

Q ss_pred             EEcCCCCCHHHHHHHHhcCCccccC----CCCCcceeEEEeC-CEEEEEEEcCChhhhH-------hhHHhhcccCCEEE
Q 029437           25 FLGLDNAGKTTLLHMLKDERLVQHQ----PTQYPTSEELSIG-KIKFKAFDLGGHQIAR-------RVWKDYYAKVDAVV   92 (193)
Q Consensus        25 v~G~~~~GKssl~~~l~~~~~~~~~----~t~~~~~~~~~~~-~~~~~~~D~~G~~~~~-------~~~~~~~~~~d~vl   92 (193)
                      ++|++|+|||||++++.+.......    .+........... ...+.+||+||.....       ......+..+|+++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il   80 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL   80 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence            5899999999999999987654211    1333333344443 6789999999975543       23345678999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      +|+|+.++....... +....    ...+.|+++++||+|+.......+.........            ......++++
T Consensus        81 ~v~~~~~~~~~~~~~-~~~~~----~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~  143 (163)
T cd00880          81 FVVDADLRADEEEEK-LLELL----RERGKPVLLVLNKIDLLPEEEEEELLELRLLIL------------LLLLGLPVIA  143 (163)
T ss_pred             EEEeCCCCCCHHHHH-HHHHH----HhcCCeEEEEEEccccCChhhHHHHHHHHHhhc------------ccccCCceEE
Confidence            999999886654443 22222    225899999999999985544443321011000            1114578999


Q ss_pred             eeeecCCChhhHHHhhhhhc
Q 029437          173 CSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +||+++.|+++++++|.+.+
T Consensus       144 ~sa~~~~~v~~l~~~l~~~~  163 (163)
T cd00880         144 VSALTGEGIDELREALIEAL  163 (163)
T ss_pred             EeeeccCCHHHHHHHHHhhC
Confidence            99999999999999998753

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.87  E-value=6.5e-21  Score=158.59  Aligned_cols=157  Identities=16%  Similarity=0.133  Sum_probs=109.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc--ccC--CCCCcceeEEEeCCEEEEEEEcCChh----------hhHhhH-Hh
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLV--QHQ--PTQYPTSEELSIGKIKFKAFDLGGHQ----------IARRVW-KD   83 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~-~~   83 (193)
                      ...+|+++|.+|||||||++++++.+..  ...  .|.+.....+.+++..+.+|||||..          .+..+. ..
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~  528 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA  528 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence            3489999999999999999999988742  222  24555555667788889999999953          122222 23


Q ss_pred             hcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCC
Q 029437           84 YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADS  163 (193)
Q Consensus        84 ~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (193)
                      .++.+|++++|+|+++..+.+.. .++..+..    .++|+++|+||+|+......+.+...+...+            .
T Consensus       529 ~i~~advvilViDat~~~s~~~~-~i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l------------~  591 (712)
T PRK09518        529 AIERSELALFLFDASQPISEQDL-KVMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEF------------D  591 (712)
T ss_pred             HhhcCCEEEEEEECCCCCCHHHH-HHHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhc------------c
Confidence            46889999999999988665544 34444432    3789999999999975433333333332211            0


Q ss_pred             CCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          164 NVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .....+++++||++|.|++++++.+.+..
T Consensus       592 ~~~~~~ii~iSAktg~gv~~L~~~i~~~~  620 (712)
T PRK09518        592 RVTWARRVNLSAKTGWHTNRLAPAMQEAL  620 (712)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            01235678999999999999999987653

>PTZ00099 rab6; Provisional

Probab=99.86  E-value=1.1e-20  Score=132.17  Aligned_cols=127  Identities=18%  Similarity=0.182  Sum_probs=97.7

Q ss_pred             cCCCCCccee--EEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc
Q 029437           48 HQPTQYPTSE--ELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP  123 (193)
Q Consensus        48 ~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  123 (193)
                      ..||.+....  .+..  ..+.+.+|||+|++++..++..+++++|++|+|+|++++++++.+..|+..+.... ..++|
T Consensus         9 ~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~p   87 (176)
T PTZ00099          9 YQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDVI   87 (176)
T ss_pred             CCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCe
Confidence            4567765443  2333  34789999999999999999999999999999999999999999998888886543 35789


Q ss_pred             EEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          124 FLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       124 viiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++|+||+|+..  ....++.......                 ....+++|||++|.|++++|++|.+.+
T Consensus        88 iilVgNK~DL~~~~~v~~~e~~~~~~~-----------------~~~~~~e~SAk~g~nV~~lf~~l~~~l  141 (176)
T PTZ00099         88 IALVGNKTDLGDLRKVTYEEGMQKAQE-----------------YNTMFHETSAKAGHNIKVLFKKIAAKL  141 (176)
T ss_pred             EEEEEECcccccccCCCHHHHHHHHHH-----------------cCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            999999999963  2333333222110                 124679999999999999999998765

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.86  E-value=1.7e-20  Score=154.23  Aligned_cols=160  Identities=21%  Similarity=0.225  Sum_probs=110.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc---CCCCCcceeEEEe----CCEEEEEEEcCChhhhHhhHHhhcccCCE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH---QPTQYPTSEELSI----GKIKFKAFDLGGHQIARRVWKDYYAKVDA   90 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~t~~~~~~~~~~----~~~~~~~~D~~G~~~~~~~~~~~~~~~d~   90 (193)
                      .+..+|+|+|++++|||||++++....+...   ..|.......+.+    .+..+.+|||||+..|..++...+..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            4567999999999999999999987766532   1233333333333    35899999999999999999888999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           91 VVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        91 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      +++|+|+++....+. .+.+..+    ...++|+++++||+|+... ..+++...+.....        ++..+...+++
T Consensus       322 aILVVDA~dGv~~QT-~E~I~~~----k~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~l--------l~e~~g~~vpv  387 (742)
T CHL00189        322 AILIIAADDGVKPQT-IEAINYI----QAANVPIIVAINKIDKANA-NTERIKQQLAKYNL--------IPEKWGGDTPM  387 (742)
T ss_pred             EEEEEECcCCCChhh-HHHHHHH----HhcCceEEEEEECCCcccc-CHHHHHHHHHHhcc--------chHhhCCCceE
Confidence            999999987432211 1222222    2247899999999999753 33444443321110        01111134689


Q ss_pred             EEeeeecCCChhhHHHhhhhh
Q 029437          171 FMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       171 ~~~Sa~~g~gv~el~~~i~~~  191 (193)
                      +++||++|.|+++++++|...
T Consensus       388 v~VSAktG~GIdeLle~I~~l  408 (742)
T CHL00189        388 IPISASQGTNIDKLLETILLL  408 (742)
T ss_pred             EEEECCCCCCHHHHHHhhhhh
Confidence            999999999999999998753

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=7.8e-21  Score=150.78  Aligned_cols=156  Identities=18%  Similarity=0.188  Sum_probs=106.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCEEEEEEEcCChhh----------hHhh-HHh
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQI----------ARRV-WKD   83 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G~~~----------~~~~-~~~   83 (193)
                      ..++|+++|.+|+|||||++++++.+.....+    |.......+...+..+.+|||||...          +... ...
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~  251 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK  251 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence            56999999999999999999999876432222    22233344556778899999999532          1111 123


Q ss_pred             hcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCC
Q 029437           84 YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADS  163 (193)
Q Consensus        84 ~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (193)
                      .+..+|++++|+|++++.+.+.. ..+.....    .+.|+++++||+|+.......++.+.+....            .
T Consensus       252 ~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~----~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l------------~  314 (435)
T PRK00093        252 AIERADVVLLVIDATEGITEQDL-RIAGLALE----AGRALVIVVNKWDLVDEKTMEEFKKELRRRL------------P  314 (435)
T ss_pred             HHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCcEEEEEECccCCCHHHHHHHHHHHHHhc------------c
Confidence            56789999999999987554332 33333322    3789999999999974322333443333222            0


Q ss_pred             CCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          164 NVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                      .....+++++||++|.|++++++.+.+.
T Consensus       315 ~~~~~~i~~~SA~~~~gv~~l~~~i~~~  342 (435)
T PRK00093        315 FLDYAPIVFISALTGQGVDKLLEAIDEA  342 (435)
T ss_pred             cccCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence            1134689999999999999999988753

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.86  E-value=6.9e-21  Score=126.37  Aligned_cols=134  Identities=25%  Similarity=0.334  Sum_probs=94.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChh----hhHhhHHhhcccCCEEEEEEEC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQ----IARRVWKDYYAKVDAVVYLVDA   97 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~----~~~~~~~~~~~~~d~vl~v~d~   97 (193)
                      ||+++|+.|||||||+++|.+.+.      .+.....+.+.+   .++||||..    .+...+......+|.|++|.|+
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~------~~~KTq~i~~~~---~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~da   73 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI------RYKKTQAIEYYD---NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDA   73 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC------CcCccceeEecc---cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecC
Confidence            899999999999999999998652      222333444443   469999954    3333334445689999999999


Q ss_pred             CChhh-HHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC-CCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437           98 YDKER-FAESKKELDALLSDEALANVPFLVLGNKIDIP-YAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI  175 (193)
Q Consensus        98 ~~~~~-~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  175 (193)
                      +++.+ +..  .    +   ....+.|+|-|+||+|+. .....+...+.+....                .-.+|++|+
T Consensus        74 t~~~~~~pP--~----f---a~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG----------------~~~if~vS~  128 (143)
T PF10662_consen   74 TEPRSVFPP--G----F---ASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAG----------------VKEIFEVSA  128 (143)
T ss_pred             CCCCccCCc--h----h---hcccCCCEEEEEECccCccchhhHHHHHHHHHHcC----------------CCCeEEEEC
Confidence            98743 111  0    1   112368999999999998 3445555555554333                124699999


Q ss_pred             ecCCChhhHHHhhh
Q 029437          176 VRKMGYGDGFKWLS  189 (193)
Q Consensus       176 ~~g~gv~el~~~i~  189 (193)
                      .+|+|+++|.++|.
T Consensus       129 ~~~eGi~eL~~~L~  142 (143)
T PF10662_consen  129 VTGEGIEELKDYLE  142 (143)
T ss_pred             CCCcCHHHHHHHHh
Confidence            99999999999985

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.86  E-value=2.5e-20  Score=143.29  Aligned_cols=150  Identities=20%  Similarity=0.217  Sum_probs=110.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc----cCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhH--------Hhh
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ----HQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW--------KDY   84 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--------~~~   84 (193)
                      ....++++++|.||+|||||+|+|.+.+-.-    ...|.+.-.+.+..++++++++||+|...-....        ...
T Consensus       214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            4588999999999999999999999988553    3347888899999999999999999965432211        234


Q ss_pred             cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCC
Q 029437           85 YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSN  164 (193)
Q Consensus        85 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (193)
                      +..+|.+++|+|++.+.+- .....+.     ....++|+++|.||.|+.........  ...                 
T Consensus       294 i~~ADlvL~v~D~~~~~~~-~d~~~~~-----~~~~~~~~i~v~NK~DL~~~~~~~~~--~~~-----------------  348 (454)
T COG0486         294 IEEADLVLFVLDASQPLDK-EDLALIE-----LLPKKKPIIVVLNKADLVSKIELESE--KLA-----------------  348 (454)
T ss_pred             HHhCCEEEEEEeCCCCCch-hhHHHHH-----hcccCCCEEEEEechhcccccccchh--hcc-----------------
Confidence            5789999999999886221 1111122     22358999999999999865442222  000                 


Q ss_pred             CcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          165 VRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                       ...+++.+|+++|+|++++.+.|.+.+
T Consensus       349 -~~~~~i~iSa~t~~Gl~~L~~~i~~~~  375 (454)
T COG0486         349 -NGDAIISISAKTGEGLDALREAIKQLF  375 (454)
T ss_pred             -CCCceEEEEecCccCHHHHHHHHHHHH
Confidence             223678999999999999999987653

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.86  E-value=1.5e-20  Score=156.52  Aligned_cols=149  Identities=22%  Similarity=0.219  Sum_probs=102.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccccCCCC----CcceeEEEeCCEEEEEEEcCChhh--------hHhhHHhhccc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ----YPTSEELSIGKIKFKAFDLGGHQI--------ARRVWKDYYAK   87 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~~   87 (193)
                      ..+|+++|.+|+|||||+|++++.......++.    ........+.+..+.+|||||...        +......++..
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~  354 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSL  354 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHh
Confidence            368999999999999999999987654333333    333344556778999999999652        33444556789


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437           88 VDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRP  167 (193)
Q Consensus        88 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (193)
                      +|++++|+|+.+.  +......+...+..   .++|+++|+||+|+....  ....+.+....                 
T Consensus       355 aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~--~~~~~~~~lg~-----------------  410 (712)
T PRK09518        355 ADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASE--YDAAEFWKLGL-----------------  410 (712)
T ss_pred             CCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccch--hhHHHHHHcCC-----------------
Confidence            9999999999764  22333333333332   589999999999986321  11222222112                 


Q ss_pred             eEEEEeeeecCCChhhHHHhhhhhc
Q 029437          168 LEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       168 ~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ...+++||++|.|+++++++|.+.+
T Consensus       411 ~~~~~iSA~~g~GI~eLl~~i~~~l  435 (712)
T PRK09518        411 GEPYPISAMHGRGVGDLLDEALDSL  435 (712)
T ss_pred             CCeEEEECCCCCCchHHHHHHHHhc
Confidence            1246899999999999999998764

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.86  E-value=4.2e-20  Score=150.41  Aligned_cols=150  Identities=19%  Similarity=0.207  Sum_probs=106.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC--cc----------------ccCCCCCcceeEEEeC-----CEEEEEEEcCChhhh
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER--LV----------------QHQPTQYPTSEELSIG-----KIKFKAFDLGGHQIA   77 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~--~~----------------~~~~t~~~~~~~~~~~-----~~~~~~~D~~G~~~~   77 (193)
                      -+|+++|+.++|||||+.++....  ..                ....|.......+.+.     ++.+++|||||+..+
T Consensus         8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF   87 (600)
T PRK05433          8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF   87 (600)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence            389999999999999999997532  10                0112333333444443     588999999999999


Q ss_pred             HhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH---HHHHHhhCCCccccC
Q 029437           78 RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE---EELRYHLGLSNFTTG  154 (193)
Q Consensus        78 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~  154 (193)
                      ...+...+..+|++++|+|+++....+....+. ....    .++|+++++||+|+......   +++.+.++..     
T Consensus        88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~-~~~~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~-----  157 (600)
T PRK05433         88 SYEVSRSLAACEGALLVVDASQGVEAQTLANVY-LALE----NDLEIIPVLNKIDLPAADPERVKQEIEDVIGID-----  157 (600)
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH-HHHH----CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC-----
Confidence            888888899999999999998864444333332 2222    37899999999998643221   2233332221     


Q ss_pred             CCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          155 KGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                                  ...++++||++|.|+++++++|.+.+
T Consensus       158 ------------~~~vi~iSAktG~GI~~Ll~~I~~~l  183 (600)
T PRK05433        158 ------------ASDAVLVSAKTGIGIEEVLEAIVERI  183 (600)
T ss_pred             ------------cceEEEEecCCCCCHHHHHHHHHHhC
Confidence                        13589999999999999999998764

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.86  E-value=7.7e-21  Score=154.40  Aligned_cols=155  Identities=19%  Similarity=0.129  Sum_probs=106.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC---ccc---cCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER---LVQ---HQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL   94 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~---~~~---~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v   94 (193)
                      +.|+++|++++|||||++++++..   +..   ...|.+.....+.+++..+.+||+||++.+...+...+..+|++++|
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV   80 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV   80 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence            479999999999999999998643   221   12244444455677778999999999999988888888999999999


Q ss_pred             EECCCh---hhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           95 VDAYDK---ERFAESKKELDALLSDEALANVP-FLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        95 ~d~~~~---~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      +|+++.   ++.+.+    . ++..   .++| +++++||+|+.+....++..++..... .. .       .....+++
T Consensus        81 VDa~~G~~~qT~ehl----~-il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l-~~-~-------~~~~~~~i  143 (581)
T TIGR00475        81 VDADEGVMTQTGEHL----A-VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQIL-NS-Y-------IFLKNAKI  143 (581)
T ss_pred             EECCCCCcHHHHHHH----H-HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHH-HH-h-------CCCCCCcE
Confidence            999873   333222    1 2221   3677 999999999974332222222211100 00 0       00013679


Q ss_pred             EEeeeecCCChhhHHHhhhhhc
Q 029437          171 FMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       171 ~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++||++|.|+++++++|.+.+
T Consensus       144 i~vSA~tG~GI~eL~~~L~~l~  165 (581)
T TIGR00475       144 FKTSAKTGQGIGELKKELKNLL  165 (581)
T ss_pred             EEEeCCCCCCchhHHHHHHHHH
Confidence            9999999999999999887543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.85  E-value=2.8e-22  Score=134.92  Aligned_cols=167  Identities=17%  Similarity=0.289  Sum_probs=130.0

Q ss_pred             HHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc----eeEEEeCCEEEEEEEcCChhhhH
Q 029437            4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPT----SEELSIGKIKFKAFDLGGHQIAR   78 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~----~~~~~~~~~~~~~~D~~G~~~~~   78 (193)
                      +.||+.-....--++.-++++|+|..++||||++.+++.+-|... ..|++..    ...+...+++..+||++|++.+.
T Consensus         4 ~~~~~~~am~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfD   83 (246)
T KOG4252|consen    4 LMFFRGMAMDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFD   83 (246)
T ss_pred             hhhhccCCCCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHH
Confidence            445554444444456789999999999999999999998777653 3344432    23344556788999999999999


Q ss_pred             hhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHH---HHHhhCCCcccc
Q 029437           79 RVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEE---LRYHLGLSNFTT  153 (193)
Q Consensus        79 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~---~~~~~~~~~~~~  153 (193)
                      .....+++++.+.++||+-+|..||+.+.+|.+.+..+  ..++|.++|-||+|+..+  ....+   +.+.+.      
T Consensus        84 aItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e--~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~------  155 (246)
T KOG4252|consen   84 AITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKE--TERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLH------  155 (246)
T ss_pred             HHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHH--hccCCeEEeeccchhhHhhhcchHHHHHHHHHhh------
Confidence            99999999999999999999999999999999999654  459999999999999832  22222   333333      


Q ss_pred             CCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          154 GKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                                    ..++.+|+++..|+..+|.+|..++
T Consensus       156 --------------~RlyRtSvked~NV~~vF~YLaeK~  180 (246)
T KOG4252|consen  156 --------------KRLYRTSVKEDFNVMHVFAYLAEKL  180 (246)
T ss_pred             --------------hhhhhhhhhhhhhhHHHHHHHHHHH
Confidence                          3457899999999999999987653

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.85  E-value=2.1e-20  Score=155.42  Aligned_cols=150  Identities=23%  Similarity=0.144  Sum_probs=103.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCCEEEEEEEcCChhhhHh----------hHHhh-
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGKIKFKAFDLGGHQIARR----------VWKDY-   84 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~----------~~~~~-   84 (193)
                      +.++|+++|+||||||||+|++++.....   ...|.......+.+++.++.+|||||..++..          ....+ 
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l   81 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI   81 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence            45789999999999999999998875421   22345555666777888999999999876532          11222 


Q ss_pred             -cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCC
Q 029437           85 -YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADS  163 (193)
Q Consensus        85 -~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (193)
                       ...+|++++|+|+++.++.   ..++.++.+    .++|+++++||+|+..........+.+....             
T Consensus        82 ~~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~~~L-------------  141 (772)
T PRK09554         82 LSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALSARL-------------  141 (772)
T ss_pred             hccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHHHHh-------------
Confidence             2478999999999886542   223344432    3799999999999863322221112221111             


Q ss_pred             CCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          164 NVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                         .++++++||++|+|++++++.|.+.
T Consensus       142 ---G~pVvpiSA~~g~GIdeL~~~I~~~  166 (772)
T PRK09554        142 ---GCPVIPLVSTRGRGIEALKLAIDRH  166 (772)
T ss_pred             ---CCCEEEEEeecCCCHHHHHHHHHHh
Confidence               2467999999999999999998764

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.84  E-value=5.2e-20  Score=148.94  Aligned_cols=163  Identities=20%  Similarity=0.207  Sum_probs=102.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccccCC---C--CCcceeEEE----------------eCCEEEEEEEcCChhhhH
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQP---T--QYPTSEELS----------------IGKIKFKAFDLGGHQIAR   78 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~---t--~~~~~~~~~----------------~~~~~~~~~D~~G~~~~~   78 (193)
                      ...|+++|++++|||||++++.+..+....+   |  .+.......                +....+.+|||||++.+.
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~   83 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT   83 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence            3579999999999999999999877653221   1  122111111                111238899999999999


Q ss_pred             hhHHhhcccCCEEEEEEECCC---hhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC--------------HHH
Q 029437           79 RVWKDYYAKVDAVVYLVDAYD---KERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS--------------EEE  141 (193)
Q Consensus        79 ~~~~~~~~~~d~vl~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~--------------~~~  141 (193)
                      .++...+..+|++++|+|+++   ++++..+    ..+ ..   .++|+++++||+|+.+...              ..+
T Consensus        84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i----~~l-~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~  155 (590)
T TIGR00491        84 NLRKRGGALADLAILIVDINEGFKPQTQEAL----NIL-RM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ  155 (590)
T ss_pred             HHHHHHHhhCCEEEEEEECCcCCCHhHHHHH----HHH-HH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence            988888899999999999987   3443332    212 11   3789999999999963211              001


Q ss_pred             HHHhhCCC-------ccccCCCcccc--CCCCCcceEEEEeeeecCCChhhHHHhhhh
Q 029437          142 LRYHLGLS-------NFTTGKGKVNL--ADSNVRPLEVFMCSIVRKMGYGDGFKWLSQ  190 (193)
Q Consensus       142 ~~~~~~~~-------~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~  190 (193)
                      +...+...       ........+..  ........+++++||++|+|+++++++|..
T Consensus       156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~  213 (590)
T TIGR00491       156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG  213 (590)
T ss_pred             HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence            11111000       00000000000  012234578999999999999999998853

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.84  E-value=2.3e-19  Score=130.89  Aligned_cols=149  Identities=23%  Similarity=0.258  Sum_probs=103.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc-c--cCCCCCcceeEEEeCCEEEEEEEcCChhhhH-------hhHHhhcccCCEE
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLV-Q--HQPTQYPTSEELSIGKIKFKAFDLGGHQIAR-------RVWKDYYAKVDAV   91 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~d~v   91 (193)
                      +++++|++|+|||||++++.+.... .  ..+|..+....+.+.+..+++||+||.....       ......++.+|++
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i   81 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI   81 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence            6899999999999999999987532 1  2235566777788889999999999974321       2234567899999


Q ss_pred             EEEEECCChh-hHHHHHHHHH----------------------------------------HHHcCC-------------
Q 029437           92 VYLVDAYDKE-RFAESKKELD----------------------------------------ALLSDE-------------  117 (193)
Q Consensus        92 l~v~d~~~~~-~~~~~~~~~~----------------------------------------~~~~~~-------------  117 (193)
                      ++|+|++++. ....+.+.+.                                        .++.+.             
T Consensus        82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~  161 (233)
T cd01896          82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI  161 (233)
T ss_pred             EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence            9999998764 2333322221                                        111111             


Q ss_pred             -----------CCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHH
Q 029437          118 -----------ALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFK  186 (193)
Q Consensus       118 -----------~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~  186 (193)
                                 +...+|+++++||+|+..   .++... +.                  ....++++||++|.|++++++
T Consensus       162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~---~~~~~~-~~------------------~~~~~~~~SA~~g~gi~~l~~  219 (233)
T cd01896         162 TVDDLIDVIEGNRVYIPCLYVYNKIDLIS---IEELDL-LA------------------RQPNSVVISAEKGLNLDELKE  219 (233)
T ss_pred             CHHHHHHHHhCCceEeeEEEEEECccCCC---HHHHHH-Hh------------------cCCCEEEEcCCCCCCHHHHHH
Confidence                       112479999999999863   333331 11                  112478999999999999999


Q ss_pred             hhhhhc
Q 029437          187 WLSQYI  192 (193)
Q Consensus       187 ~i~~~~  192 (193)
                      .|.+.+
T Consensus       220 ~i~~~L  225 (233)
T cd01896         220 RIWDKL  225 (233)
T ss_pred             HHHHHh
Confidence            998765

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.84  E-value=1.9e-19  Score=124.71  Aligned_cols=155  Identities=20%  Similarity=0.277  Sum_probs=110.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCcceeEEEeCCE-EEEEEEcCC----------hhhhHhhHHhhcc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER-LVQHQPTQYPTSEELSIGKI-KFKAFDLGG----------HQIARRVWKDYYA   86 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~~~~-~~~~~D~~G----------~~~~~~~~~~~~~   86 (193)
                      ....|+++|.+|+|||||+|++++.. .+....|+|.+..-..+.-. .+.++|.||          .+.+..+..++++
T Consensus        23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~  102 (200)
T COG0218          23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLE  102 (200)
T ss_pred             CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHh
Confidence            45689999999999999999999966 57777777776544443322 388999999          3344555555554


Q ss_pred             ---cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH----HHHHHhhCCCccccCCCccc
Q 029437           87 ---KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE----EELRYHLGLSNFTTGKGKVN  159 (193)
Q Consensus        87 ---~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~  159 (193)
                         +..++++++|+..+-  ...+..+.+++..   .++|+++++||+|.......    ..+.+.+.....        
T Consensus       103 ~R~~L~~vvlliD~r~~~--~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~--------  169 (200)
T COG0218         103 KRANLKGVVLLIDARHPP--KDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPP--------  169 (200)
T ss_pred             hchhheEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCC--------
Confidence               467889999997763  3333444444333   59999999999999865444    335555554440        


Q ss_pred             cCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          160 LADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       160 ~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                            ....++..|+.++.|++++.+.|...+
T Consensus       170 ------~~~~~~~~ss~~k~Gi~~l~~~i~~~~  196 (200)
T COG0218         170 ------DDQWVVLFSSLKKKGIDELKAKILEWL  196 (200)
T ss_pred             ------ccceEEEEecccccCHHHHHHHHHHHh
Confidence                  112288899999999999999998765

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.84  E-value=1.2e-19  Score=139.23  Aligned_cols=156  Identities=19%  Similarity=0.203  Sum_probs=116.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc----cCCCCCcceeEEEeCCEEEEEEEcCChhhhHh----------hH-Hh
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ----HQPTQYPTSEELSIGKIKFKAFDLGGHQIARR----------VW-KD   83 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~----------~~-~~   83 (193)
                      ..++|+|+|.||+|||||+|++++.+-.-    ...|.+.....+++++..+.++||+|..+-..          .. ..
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~  256 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK  256 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence            46999999999999999999999887443    33477777888889999999999999543211          11 22


Q ss_pred             hcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccC
Q 029437           84 YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLA  161 (193)
Q Consensus        84 ~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  161 (193)
                      .+..+|.+++|+|++.+-+- +..+....+.+    .+.++++++||-|+...  ...++..+++...+           
T Consensus       257 aI~~a~vvllviDa~~~~~~-qD~~ia~~i~~----~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l-----------  320 (444)
T COG1160         257 AIERADVVLLVIDATEGISE-QDLRIAGLIEE----AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKL-----------  320 (444)
T ss_pred             HHhhcCEEEEEEECCCCchH-HHHHHHHHHHH----cCCCeEEEEEccccCCchhhHHHHHHHHHHHHh-----------
Confidence            35689999999999887542 22233333333    48899999999999854  45555655555444           


Q ss_pred             CCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          162 DSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       162 ~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                       ......+++.+||++|.|+.++|+++.+.
T Consensus       321 -~~l~~a~i~~iSA~~~~~i~~l~~~i~~~  349 (444)
T COG1160         321 -PFLDFAPIVFISALTGQGLDKLFEAIKEI  349 (444)
T ss_pred             -ccccCCeEEEEEecCCCChHHHHHHHHHH
Confidence             23356789999999999999999998764

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.84  E-value=7.4e-20  Score=144.59  Aligned_cols=153  Identities=19%  Similarity=0.104  Sum_probs=99.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc----------------------------------ccCCCCCcceeEEEeC
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV----------------------------------QHQPTQYPTSEELSIG   62 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~----------------------------------~~~~t~~~~~~~~~~~   62 (193)
                      .+.+++|+++|++++|||||+++|+...-.                                  ....|.+.....+..+
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            356799999999999999999999732100                                  1223556666677788


Q ss_pred             CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC--HH
Q 029437           63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS--EE  140 (193)
Q Consensus        63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~--~~  140 (193)
                      +..+.+|||||++.+.......+..+|++++|+|++++.+.......+..+....  ...|+++++||+|+.....  ..
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~  160 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE  160 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence            8999999999998876655556688999999999987311211111122222221  1346999999999974211  11


Q ss_pred             ----HHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhh
Q 029437          141 ----ELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGD  183 (193)
Q Consensus       141 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  183 (193)
                          ++.+.+....    .        .....+++++||++|.|+++
T Consensus       161 ~~~~~i~~~l~~~g----~--------~~~~~~ii~iSA~~g~gi~~  195 (425)
T PRK12317        161 EVKEEVSKLLKMVG----Y--------KPDDIPFIPVSAFEGDNVVK  195 (425)
T ss_pred             HHHHHHHHHHHhhC----C--------CcCcceEEEeecccCCCccc
Confidence                2222221111    0        00236799999999999987

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.83  E-value=2.7e-19  Score=128.62  Aligned_cols=148  Identities=20%  Similarity=0.099  Sum_probs=93.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccc----------------------------------cCCCCCcceeEEEeCCEEEE
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQ----------------------------------HQPTQYPTSEELSIGKIKFK   67 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~----------------------------------~~~t~~~~~~~~~~~~~~~~   67 (193)
                      ||+++|++|+|||||+++|+...-..                                  ...|.+.....+.+.+..+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            58999999999999999996432110                                  12244445556677788999


Q ss_pred             EEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC--HHHHHHh
Q 029437           68 AFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS--EEELRYH  145 (193)
Q Consensus        68 ~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~--~~~~~~~  145 (193)
                      +|||||+..+.......+..+|++++|+|++++.. ......+ .+....  ...++|+++||+|+.....  ..++...
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-~~~~~~~-~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~  156 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVL-EQTRRHS-YILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD  156 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-HhHHHHH-HHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence            99999998876656667789999999999987532 1111211 222221  1245788999999974321  1122222


Q ss_pred             hCCCccccCCCccccCCCCCcceEEEEeeeecCCChhh
Q 029437          146 LGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGD  183 (193)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  183 (193)
                      +.....          .......+++++||++|.|+.+
T Consensus       157 ~~~~~~----------~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         157 YLAFAA----------KLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             HHHHHH----------HcCCCCceEEEEeCCCCCCCcc
Confidence            211000          0000225689999999999975

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.83  E-value=3.2e-19  Score=129.14  Aligned_cols=164  Identities=23%  Similarity=0.180  Sum_probs=101.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcccc-----------------CCCC-------Ccc-----------------eeEEE
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQH-----------------QPTQ-------YPT-----------------SEELS   60 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~-----------------~~t~-------~~~-----------------~~~~~   60 (193)
                      ||+++|+.++|||||++++....+...                 ..|.       +..                 .+.++
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            589999999999999999986554320                 0010       000                 12344


Q ss_pred             eCCEEEEEEEcCChhhhHhhHHhhcc--cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC
Q 029437           61 IGKIKFKAFDLGGHQIARRVWKDYYA--KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS  138 (193)
Q Consensus        61 ~~~~~~~~~D~~G~~~~~~~~~~~~~--~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~  138 (193)
                      ..+..+.++||||+..+.......+.  .+|++++|+|+..+.. ....+.+..+..    .++|+++++||+|+.....
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~----~~ip~ivvvNK~D~~~~~~  155 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA----LNIPVFVVVTKIDLAPANI  155 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEECccccCHHH
Confidence            55678999999999988665544443  6899999999976532 222233333322    3789999999999874333


Q ss_pred             HHH----HHHhhCCCcccc-----CCCccc----cCCCCCcceEEEEeeeecCCChhhHHHhhhh
Q 029437          139 EEE----LRYHLGLSNFTT-----GKGKVN----LADSNVRPLEVFMCSIVRKMGYGDGFKWLSQ  190 (193)
Q Consensus       139 ~~~----~~~~~~~~~~~~-----~~~~~~----~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~  190 (193)
                      ..+    +.+.+.......     ....+.    ........+++|.+||.+|.|++++++.|..
T Consensus       156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            333    333333211110     000000    0011224568999999999999999998853

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.83  E-value=1e-19  Score=142.65  Aligned_cols=162  Identities=17%  Similarity=0.109  Sum_probs=102.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc------cCCCCCcc-------------------eeEE-Ee------CCEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ------HQPTQYPT-------------------SEEL-SI------GKIK   65 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~------~~~t~~~~-------------------~~~~-~~------~~~~   65 (193)
                      +.+++|+++|++++|||||+++|.+.....      ...|....                   .... ..      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            567899999999999999999997542211      00111110                   0000 01      2467


Q ss_pred             EEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHh
Q 029437           66 FKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYH  145 (193)
Q Consensus        66 ~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~  145 (193)
                      +.+||+||++.+...+......+|++++|+|++++....+..+.+..+ ...  ...|+++++||+|+.......+..++
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~  158 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALENYEE  158 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence            999999999999887777778899999999998643111222222222 211  23578999999999743222121122


Q ss_pred             hCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          146 LGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +.... .         ......++++++||++|.|+++++++|...+
T Consensus       159 i~~~l-~---------~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       159 IKEFV-K---------GTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             HHhhh-h---------hcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            21111 0         0001246799999999999999999998753

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.83  E-value=2.2e-19  Score=130.10  Aligned_cols=150  Identities=19%  Similarity=0.119  Sum_probs=96.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC---------------------------cc-------ccCCCCCcceeEEEeCCEEEE
Q 029437           22 KILFLGLDNAGKTTLLHMLKDER---------------------------LV-------QHQPTQYPTSEELSIGKIKFK   67 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~---------------------------~~-------~~~~t~~~~~~~~~~~~~~~~   67 (193)
                      +|+++|++++|||||+.+|+...                           +.       ....|.+.....+.+.+.++.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            58999999999999999984211                           00       112244556667788899999


Q ss_pred             EEEcCChhhhHhhHHhhcccCCEEEEEEECCChhh------HHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC-C--
Q 029437           68 AFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKER------FAESKKELDALLSDEALANVPFLVLGNKIDIPYAA-S--  138 (193)
Q Consensus        68 ~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~-~--  138 (193)
                      +|||||+..+.......++.+|++++|+|+++...      ..+....+... ..  ....|+++++||+|+.... .  
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~iiivvNK~Dl~~~~~~~~  157 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RT--LGVKQLIVAVNKMDDVTVNWSEE  157 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HH--cCCCeEEEEEEccccccccccHH
Confidence            99999998887666667788999999999987421      11122222221 11  1246899999999997421 1  


Q ss_pred             -HHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChh
Q 029437          139 -EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYG  182 (193)
Q Consensus       139 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  182 (193)
                       .+++.+.+........        .....++++++||++|.|++
T Consensus       158 ~~~~i~~~l~~~l~~~~--------~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         158 RYDEIKKELSPFLKKVG--------YNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHcC--------CCcCCceEEEeecCcCCCCC
Confidence             2233333221110000        00134789999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.83  E-value=4.8e-20  Score=145.62  Aligned_cols=156  Identities=17%  Similarity=0.072  Sum_probs=99.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC--cc--------------------------------ccCCCCCcceeEEEeC
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDER--LV--------------------------------QHQPTQYPTSEELSIG   62 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~   62 (193)
                      .+..++|+++|+.++|||||+.+|+...  ..                                ....|.+.....+..+
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            5677899999999999999999997421  10                                0122334445556677


Q ss_pred             CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHH--HHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC--
Q 029437           63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFA--ESKKELDALLSDEALANVPFLVLGNKIDIPYAAS--  138 (193)
Q Consensus        63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~--  138 (193)
                      +..+.+|||||++.+.......+..+|++++|+|+++.++..  .....+ .+....  ...|+++++||+|+.....  
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~--~~~~iIVviNK~Dl~~~~~~~  160 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHA-FLARTL--GINQLIVAINKMDSVNYDEEE  160 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHH-HHHHHc--CCCeEEEEEEChhccCccHHH
Confidence            889999999999988766666678999999999998874321  111111 122211  2357999999999964211  


Q ss_pred             HHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhh
Q 029437          139 EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGD  183 (193)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  183 (193)
                      .++..++.........        .....++++++||++|.|+.+
T Consensus       161 ~~~~~~ei~~~~~~~g--------~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       161 FEAIKKEVSNLIKKVG--------YNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             HHHHHHHHHHHHHHcC--------CCcccceEEEeeccccccccc
Confidence            1112222111110000        000246899999999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.83  E-value=3.8e-20  Score=150.54  Aligned_cols=142  Identities=23%  Similarity=0.181  Sum_probs=96.7

Q ss_pred             cCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCEEEEEEEcCChhhhHhh------HHhhc--ccCCEEEEEE
Q 029437           27 GLDNAGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQIARRV------WKDYY--AKVDAVVYLV   95 (193)
Q Consensus        27 G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~------~~~~~--~~~d~vl~v~   95 (193)
                      |++|+|||||+|++++..+. .+.|  |.+.....+.+++..+++|||||+.++...      ...++  ..+|++++|+
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv   80 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV   80 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence            89999999999999987652 2222  344445566777888999999998765432      23332  3789999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI  175 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  175 (193)
                      |+++.+.   ...+..+..+    .+.|+++++||+|+..........+.+....                .++++++||
T Consensus        81 Dat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~l----------------g~pvv~tSA  137 (591)
T TIGR00437        81 DASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEERL----------------GVPVVPTSA  137 (591)
T ss_pred             cCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHHc----------------CCCEEEEEC
Confidence            9987543   2233333322    3789999999999863221111111111111                246899999


Q ss_pred             ecCCChhhHHHhhhhh
Q 029437          176 VRKMGYGDGFKWLSQY  191 (193)
Q Consensus       176 ~~g~gv~el~~~i~~~  191 (193)
                      ++|.|+++++++|.+.
T Consensus       138 ~tg~Gi~eL~~~i~~~  153 (591)
T TIGR00437       138 TEGRGIERLKDAIRKA  153 (591)
T ss_pred             CCCCCHHHHHHHHHHH
Confidence            9999999999999765

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.82  E-value=9.8e-19  Score=124.11  Aligned_cols=149  Identities=17%  Similarity=0.120  Sum_probs=95.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCc----------c---------ccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhh
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERL----------V---------QHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRV   80 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~----------~---------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~   80 (193)
                      +++|+++|++++|||||+++|+....          .         ....|.......+..++..+.++||||+..+...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            57999999999999999999975310          0         1112333334445566788999999999988777


Q ss_pred             HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCCCCC-HHHHHHhhCCCccccCCCcc
Q 029437           81 WKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGKGKV  158 (193)
Q Consensus        81 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~  158 (193)
                      ....+..+|++++|+|+...-. ....+.+..+..    .++| +|+++||+|+..... .+++.++..........   
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~---  153 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGF---  153 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcc---
Confidence            7777889999999999976422 222333333322    3566 789999999963221 11122222211100000   


Q ss_pred             ccCCCCCcceEEEEeeeecCCCh
Q 029437          159 NLADSNVRPLEVFMCSIVRKMGY  181 (193)
Q Consensus       159 ~~~~~~~~~~~~~~~Sa~~g~gv  181 (193)
                           ....++++++||.+|.|+
T Consensus       154 -----~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         154 -----DGDNTPIVRGSALKALEG  171 (195)
T ss_pred             -----cccCCeEEEeeCccccCC
Confidence                 012478999999999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.82  E-value=5e-19  Score=129.25  Aligned_cols=166  Identities=20%  Similarity=0.220  Sum_probs=113.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc---------------------ccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhh
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLV---------------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRV   80 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~   80 (193)
                      +|+++|++|+|||||+++++...-.                     ....+.......+.+.+.++.+|||||+..+...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            5899999999999999999753210                     0111333445667788999999999999988888


Q ss_pred             HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC---CHHHHHHhhCCCccccCC-C
Q 029437           81 WKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA---SEEELRYHLGLSNFTTGK-G  156 (193)
Q Consensus        81 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~-~  156 (193)
                      ....++.+|++++|+|+.+.... ....++.....    .++|+++++||+|+..+.   ..+++.+.++.....-+. .
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~  155 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG  155 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence            88888999999999999886432 33344444322    378999999999997532   223355555432221000 0


Q ss_pred             ---------------ccccCCC----------------------------CCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          157 ---------------KVNLADS----------------------------NVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       157 ---------------~~~~~~~----------------------------~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                                     .+.++..                            ....++++..||.++.|+..+++.|.+.+
T Consensus       156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~  234 (237)
T cd04168         156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLF  234 (237)
T ss_pred             EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhc
Confidence                           0000000                            01357899999999999999999998765

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.82  E-value=4.4e-19  Score=144.07  Aligned_cols=156  Identities=20%  Similarity=0.185  Sum_probs=110.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC--Cccc-----------------cCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHH
Q 029437           22 KILFLGLDNAGKTTLLHMLKDE--RLVQ-----------------HQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWK   82 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~--~~~~-----------------~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~   82 (193)
                      +|+++|+.++|||||+++++..  .+..                 ...|.......+.+.+.++++|||||+..+.....
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            7999999999999999999752  2211                 12244444566788999999999999999988888


Q ss_pred             hhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---HHHHHHhhCCCccccCCCccc
Q 029437           83 DYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---EEELRYHLGLSNFTTGKGKVN  159 (193)
Q Consensus        83 ~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~  159 (193)
                      ..++.+|++++|+|+.+.. ..+...++.....    .++|+++++||+|+..+..   .+++.+.+....    ...  
T Consensus        83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g----~~~--  151 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELG----ADD--  151 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhc----ccc--
Confidence            8899999999999997642 2344455555543    3789999999999864322   122333222110    000  


Q ss_pred             cCCCCCcceEEEEeeeecCC----------ChhhHHHhhhhhc
Q 029437          160 LADSNVRPLEVFMCSIVRKM----------GYGDGFKWLSQYI  192 (193)
Q Consensus       160 ~~~~~~~~~~~~~~Sa~~g~----------gv~el~~~i~~~~  192 (193)
                          ....++++++||++|.          |++.+|+.|.+.+
T Consensus       152 ----e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l  190 (594)
T TIGR01394       152 ----EQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV  190 (594)
T ss_pred             ----ccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence                0123578999999996          7999999998765

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.82  E-value=2.5e-19  Score=140.45  Aligned_cols=163  Identities=18%  Similarity=0.125  Sum_probs=100.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc--c----cCCCCCcceeEEE------------e---------C-----CE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV--Q----HQPTQYPTSEELS------------I---------G-----KI   64 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~----~~~t~~~~~~~~~------------~---------~-----~~   64 (193)
                      .+.+++|+++|+.++|||||+.+|.+....  .    ...|.........            +         +     ..
T Consensus         6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (411)
T PRK04000          6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR   85 (411)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence            567799999999999999999999653111  1    1112211110000            0         0     25


Q ss_pred             EEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHH
Q 029437           65 KFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRY  144 (193)
Q Consensus        65 ~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~  144 (193)
                      .+++|||||+..+..........+|++++|+|+.++....+....+..+ ...  ...|+++++||+|+.......+..+
T Consensus        86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~  162 (411)
T PRK04000         86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKERALENYE  162 (411)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccchhHHHHHH
Confidence            7999999999988776666667889999999998642111112222222 111  1347899999999975322221111


Q ss_pred             hhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          145 HLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .+.... .         .......+++++||++|.|+++++++|.+.+
T Consensus       163 ~i~~~l-~---------~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        163 QIKEFV-K---------GTVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             HHHHHh-c---------cccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence            111100 0         0001236789999999999999999998754

>cd04169 RF3 RF3 subfamily

Probab=99.82  E-value=1.7e-18  Score=128.51  Aligned_cols=122  Identities=20%  Similarity=0.220  Sum_probs=86.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc--c-----------------------cCCCCCcceeEEEeCCEEEEEEEcCChhh
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLV--Q-----------------------HQPTQYPTSEELSIGKIKFKAFDLGGHQI   76 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~--~-----------------------~~~t~~~~~~~~~~~~~~~~~~D~~G~~~   76 (193)
                      +|+++|++|+|||||+++++...-.  .                       ...+.......+.+.+.++++|||||+..
T Consensus         4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d   83 (267)
T cd04169           4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED   83 (267)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence            7999999999999999999743110  0                       01122233456788899999999999998


Q ss_pred             hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---HHHHHHhhCC
Q 029437           77 ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---EEELRYHLGL  148 (193)
Q Consensus        77 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~~~~  148 (193)
                      +.......++.+|++++|+|+++... .....++... .   ..++|+++++||+|+..+..   .+++.+.++.
T Consensus        84 f~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~-~---~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~  153 (267)
T cd04169          84 FSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVC-R---LRGIPIITFINKLDREGRDPLELLDEIEEELGI  153 (267)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHH-H---hcCCCEEEEEECCccCCCCHHHHHHHHHHHHCC
Confidence            87766777889999999999987532 1222333322 2   24789999999999875543   3556665553

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.81  E-value=9.7e-19  Score=121.27  Aligned_cols=151  Identities=20%  Similarity=0.250  Sum_probs=93.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccee--EEEeCCEEEEEEEcCChh----------hhHhhHHhhcc---
Q 029437           23 ILFLGLDNAGKTTLLHMLKDERLV-QHQPTQYPTSE--ELSIGKIKFKAFDLGGHQ----------IARRVWKDYYA---   86 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~--~~~~~~~~~~~~D~~G~~----------~~~~~~~~~~~---   86 (193)
                      |+++|++|||||||++++.+..+. ...++.+....  ..... ..+.+|||||..          .+......++.   
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRE   80 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhCh
Confidence            789999999999999999954433 23334333222  22223 389999999942          23333333443   


Q ss_pred             cCCEEEEEEECCChhh--HHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCC
Q 029437           87 KVDAVVYLVDAYDKER--FAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSN  164 (193)
Q Consensus        87 ~~d~vl~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (193)
                      ..+++++++|..+..+  ...+..++..       .+.|+++++||+|+.................           +..
T Consensus        81 ~~~~~~~v~d~~~~~~~~~~~~~~~l~~-------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l-----------~~~  142 (170)
T cd01876          81 NLKGVVLLIDSRHGPTEIDLEMLDWLEE-------LGIPFLVVLTKADKLKKSELAKALKEIKKEL-----------KLF  142 (170)
T ss_pred             hhhEEEEEEEcCcCCCHhHHHHHHHHHH-------cCCCEEEEEEchhcCChHHHHHHHHHHHHHH-----------Hhc
Confidence            4678999999976532  1222222222       2589999999999964332222222221111           001


Q ss_pred             CcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          165 VRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ....+++++||+++.|+++++++|.+.+
T Consensus       143 ~~~~~~~~~Sa~~~~~~~~l~~~l~~~~  170 (170)
T cd01876         143 EIDPPIILFSSLKGQGIDELRALIEKWL  170 (170)
T ss_pred             cCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence            1335788999999999999999998754

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.81  E-value=5.9e-20  Score=127.16  Aligned_cols=127  Identities=21%  Similarity=0.338  Sum_probs=85.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEe---CCEEEEEEEcCChhhhHhhHHhh---cccCCEEEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSI---GKIKFKAFDLGGHQIARRVWKDY---YAKVDAVVY   93 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~G~~~~~~~~~~~---~~~~d~vl~   93 (193)
                      ...|+++||+|||||+|+.+|..+...++.....++.. ...   .+..+.++|+|||.+.+......   ...+.+|+|
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~-~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIf   81 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIA-YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIF   81 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEE-CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCce-EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEE
Confidence            34799999999999999999999977666655544332 222   34579999999999987655443   778999999


Q ss_pred             EEECCC-hhhHHHHHHHHHHHHcCC--CCCCCcEEEEEeCCCCCCCCCHHHHHHhhC
Q 029437           94 LVDAYD-KERFAESKKELDALLSDE--ALANVPFLVLGNKIDIPYAASEEELRYHLG  147 (193)
Q Consensus        94 v~d~~~-~~~~~~~~~~~~~~~~~~--~~~~~pviiv~nK~D~~~~~~~~~~~~~~~  147 (193)
                      |+|++. +..+..+.+++..++...  ....+|+++++||.|+..+.+...+...++
T Consensus        82 vvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE  138 (181)
T PF09439_consen   82 VVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLE  138 (181)
T ss_dssp             EEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHH
T ss_pred             EEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHH
Confidence            999974 556777777777776432  246899999999999998777666655555

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK10218 GTP-binding protein; Provisional

Probab=99.81  E-value=1e-18  Score=141.94  Aligned_cols=157  Identities=16%  Similarity=0.190  Sum_probs=109.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc--CCcccc-------------CC----CCCcceeEEEeCCEEEEEEEcCChhhhHhhH
Q 029437           21 AKILFLGLDNAGKTTLLHMLKD--ERLVQH-------------QP----TQYPTSEELSIGKIKFKAFDLGGHQIARRVW   81 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~--~~~~~~-------------~~----t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~   81 (193)
                      -+|+++|+.++|||||+++++.  +.+...             ..    |.......+.+++..+++|||||+..+...+
T Consensus         6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v   85 (607)
T PRK10218          6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEV   85 (607)
T ss_pred             eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHH
Confidence            4899999999999999999986  223221             11    2222344566788999999999999999888


Q ss_pred             HhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH---HHHHHhhCCCccccCCCcc
Q 029437           82 KDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE---EELRYHLGLSNFTTGKGKV  158 (193)
Q Consensus        82 ~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~  158 (193)
                      ..+++.+|++++|+|+.+... .+....+.....    .++|.++++||+|+..+...   +++.+.+....    .   
T Consensus        86 ~~~l~~aDg~ILVVDa~~G~~-~qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~----~---  153 (607)
T PRK10218         86 ERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLD----A---  153 (607)
T ss_pred             HHHHHhCCEEEEEEecccCcc-HHHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccC----c---
Confidence            889999999999999987532 223333444333    37899999999999754332   23333332100    0   


Q ss_pred             ccCCCCCcceEEEEeeeecCC----------ChhhHHHhhhhhc
Q 029437          159 NLADSNVRPLEVFMCSIVRKM----------GYGDGFKWLSQYI  192 (193)
Q Consensus       159 ~~~~~~~~~~~~~~~Sa~~g~----------gv~el~~~i~~~~  192 (193)
                       .  .....++++.+||++|.          |+..|++.|.+.+
T Consensus       154 -~--~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i  194 (607)
T PRK10218        154 -T--DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV  194 (607)
T ss_pred             -c--ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence             0  01123679999999998          5888998888765

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.80  E-value=1.7e-19  Score=141.10  Aligned_cols=159  Identities=17%  Similarity=0.262  Sum_probs=125.2

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCc---ceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYP---TSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      .+++.+||+++|+.|+|||||+-++...++....|..-+   ....+.-..+..++.|++.....+......++++|++.
T Consensus         5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~   84 (625)
T KOG1707|consen    5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC   84 (625)
T ss_pred             cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence            467889999999999999999999999999876663322   12333445567899999987777777677789999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCC--CCCCcEEEEEeCCCCCCCCCH--HH----HHHhhCCCccccCCCccccCCCC
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEA--LANVPFLVLGNKIDIPYAASE--EE----LRYHLGLSNFTTGKGKVNLADSN  164 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~pviiv~nK~D~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~  164 (193)
                      ++++++++++++.+...|.+++....  ..++|+|+|+||+|.......  +.    ++.++.                 
T Consensus        85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~-----------------  147 (625)
T KOG1707|consen   85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFA-----------------  147 (625)
T ss_pred             EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhH-----------------
Confidence            99999999999999999999987654  258999999999999843332  22    333332                 


Q ss_pred             CcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          165 VRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                       .....++|||++..++.|+|..-.+++
T Consensus       148 -EiEtciecSA~~~~n~~e~fYyaqKaV  174 (625)
T KOG1707|consen  148 -EIETCIECSALTLANVSELFYYAQKAV  174 (625)
T ss_pred             -HHHHHHhhhhhhhhhhHhhhhhhhhee
Confidence             234578999999999999999877764

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.80  E-value=3.7e-18  Score=125.87  Aligned_cols=169  Identities=18%  Similarity=0.178  Sum_probs=117.2

Q ss_pred             HHHHHHHHHhhC---CCC-CccEEEEEcCCCCCHHHHHHHHhcCCcc--c-cCCCCCcceeEEEeCCEEEEEEEcCChhh
Q 029437            4 LDWFYGVLASLG---LWQ-KEAKILFLGLDNAGKTTLLHMLKDERLV--Q-HQPTQYPTSEELSIGKIKFKAFDLGGHQI   76 (193)
Q Consensus         4 ~~~~~~~~~~~~---~~~-~~~~i~v~G~~~~GKssl~~~l~~~~~~--~-~~~t~~~~~~~~~~~~~~~~~~D~~G~~~   76 (193)
                      |.|+....+.++   .-+ ....|+|.|.||+|||||++++++.+.-  + ...|.+.+.+.++.+..+++++||||.-.
T Consensus       148 L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLD  227 (346)
T COG1084         148 LEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLD  227 (346)
T ss_pred             HHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccC
Confidence            445555554444   333 7789999999999999999999987743  2 22478899999999999999999999311


Q ss_pred             ---------hHhhHHhhcccCCEEEEEEECCChhh--HHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHh
Q 029437           77 ---------ARRVWKDYYAKVDAVVYLVDAYDKER--FAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYH  145 (193)
Q Consensus        77 ---------~~~~~~~~~~~~d~vl~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~  145 (193)
                               ..+.....-+-.++|+|++|.+..+.  .+.-..++.++-..   .+.|+++|+||+|..+....+++...
T Consensus       228 RPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~  304 (346)
T COG1084         228 RPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEAS  304 (346)
T ss_pred             CChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHH
Confidence                     11111222234689999999987643  44555666666433   34899999999999865555555544


Q ss_pred             hCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          146 LGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                      .....                ......+|+..+.+++++.+.+...
T Consensus       305 ~~~~~----------------~~~~~~~~~~~~~~~d~~~~~v~~~  334 (346)
T COG1084         305 VLEEG----------------GEEPLKISATKGCGLDKLREEVRKT  334 (346)
T ss_pred             HHhhc----------------cccccceeeeehhhHHHHHHHHHHH
Confidence            33222                2335688999999998877666543

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.80  E-value=9.2e-19  Score=128.21  Aligned_cols=152  Identities=23%  Similarity=0.301  Sum_probs=110.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCCEE-EEEEEcCChhhh-------HhhHHhhcccCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGKIK-FKAFDLGGHQIA-------RRVWKDYYAKVD   89 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~-~~~~D~~G~~~~-------~~~~~~~~~~~d   89 (193)
                      ..++++|.||||||||++++++.+..-   ..+|..+....+.+++.. +++-|.||.-.-       .-.+...+..++
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~  276 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK  276 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence            468999999999999999999876421   223667777777777654 999999995432       123334457899


Q ss_pred             EEEEEEECCCh---hhHHHHHHHHHHH-HcCCCCCCCcEEEEEeCCCCCCCCC-H-HHHHHhhCCCccccCCCccccCCC
Q 029437           90 AVVYLVDAYDK---ERFAESKKELDAL-LSDEALANVPFLVLGNKIDIPYAAS-E-EELRYHLGLSNFTTGKGKVNLADS  163 (193)
Q Consensus        90 ~vl~v~d~~~~---~~~~~~~~~~~~~-~~~~~~~~~pviiv~nK~D~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~  163 (193)
                      .++||+|++.+   +-++++..++.++ +.+....+.|.++|+||+|++.+.. . +++++.+.                
T Consensus       277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq----------------  340 (366)
T KOG1489|consen  277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQ----------------  340 (366)
T ss_pred             eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcC----------------
Confidence            99999999887   6667777666665 2344567899999999999962211 1 23333332                


Q ss_pred             CCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          164 NVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                         ...++++||++++|+.++++.|...
T Consensus       341 ---~~~V~pvsA~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  341 ---NPHVVPVSAKSGEGLEELLNGLREL  365 (366)
T ss_pred             ---CCcEEEeeeccccchHHHHHHHhhc
Confidence               2368999999999999999988653

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.80  E-value=2.8e-18  Score=112.81  Aligned_cols=160  Identities=19%  Similarity=0.263  Sum_probs=121.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCC-cceeEEEeC---CEEEEEEEcCChhhh-HhhHHhhcccCC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQY-PTSEELSIG---KIKFKAFDLGGHQIA-RRVWKDYYAKVD   89 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~-~~~~~~~~~---~~~~~~~D~~G~~~~-~~~~~~~~~~~d   89 (193)
                      -+..+++++|.-++|||+++.++...+...   ..||.. .....++.+   .-.+.++||.|.... .++-.++++.+|
T Consensus         7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen    7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            355799999999999999999998776443   334543 333444433   357999999998887 455578899999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           90 AVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        90 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++++|++..|++||+.+...-..+-.......+|+++++||.|+..+...+.-..+.....               ..++
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~r---------------Ekvk  151 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKR---------------EKVK  151 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhh---------------hhee
Confidence            9999999999999998887777776666667899999999999974433333333333333               4578


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .++++|..+..+-|-|..+..++
T Consensus       152 l~eVta~dR~sL~epf~~l~~rl  174 (198)
T KOG3883|consen  152 LWEVTAMDRPSLYEPFTYLASRL  174 (198)
T ss_pred             EEEEEeccchhhhhHHHHHHHhc
Confidence            89999999999988888887654

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.79  E-value=1.5e-18  Score=141.59  Aligned_cols=156  Identities=19%  Similarity=0.111  Sum_probs=100.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc------cCCCCCcceeEEEe-CCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ------HQPTQYPTSEELSI-GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~------~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      +.|+++|++++|||||++++++.+...      ...|.+.....+.. ++..+.+|||||++.+...+...+..+|++++
T Consensus         1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            358999999999999999998643211      12333333223332 34678999999999997777777899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      |+|+.+.-. .+..+.+. ++..   .++| +++++||+|+......++..+++....          ........++++
T Consensus        81 VVda~eg~~-~qT~ehl~-il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l----------~~~~~~~~~ii~  145 (614)
T PRK10512         81 VVACDDGVM-AQTREHLA-ILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVL----------REYGFAEAKLFV  145 (614)
T ss_pred             EEECCCCCc-HHHHHHHH-HHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHH----------HhcCCCCCcEEE
Confidence            999987421 11122222 2222   2455 579999999974322222222222111          000002357899


Q ss_pred             eeeecCCChhhHHHhhhhh
Q 029437          173 CSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~  191 (193)
                      +||++|.|+++++++|.+.
T Consensus       146 VSA~tG~gI~~L~~~L~~~  164 (614)
T PRK10512        146 TAATEGRGIDALREHLLQL  164 (614)
T ss_pred             EeCCCCCCCHHHHHHHHHh
Confidence            9999999999999999754

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.79  E-value=3e-18  Score=137.13  Aligned_cols=146  Identities=25%  Similarity=0.262  Sum_probs=111.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-c--cCCCCCcceeEEEeCCEEEEEEEcCChhhhH------hhHHhhc--cc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLV-Q--HQPTQYPTSEELSIGKIKFKAFDLGGHQIAR------RVWKDYY--AK   87 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~--~~   87 (193)
                      +..+++++|+||+|||||+|++++.... .  ...|+...+..+.+.+.+++++|+||-.+..      ....+++  .+
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~   81 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK   81 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence            4567999999999999999999988743 2  3347888889999999999999999965432      2223332  36


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC----CCCHHHHHHhhCCCccccCCCccccCCC
Q 029437           88 VDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY----AASEEELRYHLGLSNFTTGKGKVNLADS  163 (193)
Q Consensus        88 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (193)
                      +|+++.|+|+++-+.   ......++++    .+.|++++.|++|...    ..+.+.+.+.++                
T Consensus        82 ~D~ivnVvDAtnLeR---nLyltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG----------------  138 (653)
T COG0370          82 PDLIVNVVDATNLER---NLYLTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLLG----------------  138 (653)
T ss_pred             CCEEEEEcccchHHH---HHHHHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHhC----------------
Confidence            799999999988754   2223333433    3889999999999873    345666777776                


Q ss_pred             CCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          164 NVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                          ++++++||++|.|++++++.|.+.
T Consensus       139 ----vPVv~tvA~~g~G~~~l~~~i~~~  162 (653)
T COG0370         139 ----VPVVPTVAKRGEGLEELKRAIIEL  162 (653)
T ss_pred             ----CCEEEEEeecCCCHHHHHHHHHHh
Confidence                455999999999999999998753

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.79  E-value=6.9e-18  Score=137.09  Aligned_cols=164  Identities=19%  Similarity=0.200  Sum_probs=101.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccCC-----CCCcceeEEEe---------C-------CEEEEEEEcCChhhh
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQP-----TQYPTSEELSI---------G-------KIKFKAFDLGGHQIA   77 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-----t~~~~~~~~~~---------~-------~~~~~~~D~~G~~~~   77 (193)
                      +...|.++|++|+|||||++++.+.......+     +.+........         .       ...+.+|||||+..+
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f   84 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF   84 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence            44679999999999999999998665433222     12211111110         0       012789999999999


Q ss_pred             HhhHHhhcccCCEEEEEEECCC---hhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH--------------H
Q 029437           78 RRVWKDYYAKVDAVVYLVDAYD---KERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE--------------E  140 (193)
Q Consensus        78 ~~~~~~~~~~~d~vl~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~--------------~  140 (193)
                      ..++...+..+|++++|+|+++   ++++..+.    .+ ..   .++|+++++||+|+.+....              .
T Consensus        85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~-~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~  156 (586)
T PRK04004         85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN----IL-KR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ  156 (586)
T ss_pred             HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HH-HH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence            9888888889999999999987   44443332    11 11   47899999999998521110              0


Q ss_pred             HHHHhhC-------CCccccCCCcccc--CCCCCcceEEEEeeeecCCChhhHHHhhhh
Q 029437          141 ELRYHLG-------LSNFTTGKGKVNL--ADSNVRPLEVFMCSIVRKMGYGDGFKWLSQ  190 (193)
Q Consensus       141 ~~~~~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~  190 (193)
                      .+...+.       ......+...+.+  ........+++++||++|.|++++++.+..
T Consensus       157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence            0111000       0000000000000  012234578999999999999999988753

>COG2262 HflX GTPases [General function prediction only]

Probab=99.79  E-value=2e-17  Score=125.39  Aligned_cols=154  Identities=19%  Similarity=0.237  Sum_probs=112.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeC-CEEEEEEEcCCh---------hhhHhhHHh
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIG-KIKFKAFDLGGH---------QIARRVWKD   83 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~D~~G~---------~~~~~~~~~   83 (193)
                      ...-+.|.++|-.|||||||+|++++.....   ...|.+++...+.+. +..+.+-||.|-         ..|++...+
T Consensus       189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE  268 (411)
T COG2262         189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEE  268 (411)
T ss_pred             ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHH
Confidence            3466789999999999999999999776432   345888888888877 578999999993         233443333


Q ss_pred             hcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCC
Q 029437           84 YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADS  163 (193)
Q Consensus        84 ~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (193)
                       ...+|++++|+|+++|...+++ +....++.+....++|+|++.||+|+.......   .......             
T Consensus       269 -~~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~---~~~~~~~-------------  330 (411)
T COG2262         269 -VKEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDEEIL---AELERGS-------------  330 (411)
T ss_pred             -hhcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCchhhh---hhhhhcC-------------
Confidence             3688999999999999654444 344455555666789999999999987443311   1111000             


Q ss_pred             CCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          164 NVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                          ...+.+||++|.|+++|++.|...+
T Consensus       331 ----~~~v~iSA~~~~gl~~L~~~i~~~l  355 (411)
T COG2262         331 ----PNPVFISAKTGEGLDLLRERIIELL  355 (411)
T ss_pred             ----CCeEEEEeccCcCHHHHHHHHHHHh
Confidence                1468999999999999999988764

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.79  E-value=3.9e-19  Score=117.09  Aligned_cols=160  Identities=19%  Similarity=0.218  Sum_probs=120.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEE--eCCEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELS--IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      .-.++|.++|++..|||||+-.+.+.++.+ ...+.+.+.  ..+.  .-++.+.+||.+|++++..+.+....++-+++
T Consensus        18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl   97 (205)
T KOG1673|consen   18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL   97 (205)
T ss_pred             ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence            346899999999999999999999888753 334555443  3333  34578999999999999999998889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC---CHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA---SEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      +++|.+.++++..+.+|+++....+ ..-+| |+++||.|..-..   ..+++..+-....    +         .....
T Consensus        98 FmFDLt~r~TLnSi~~WY~QAr~~N-ktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YA----k---------~mnAs  162 (205)
T KOG1673|consen   98 FMFDLTRRSTLNSIKEWYRQARGLN-KTAIP-ILVGTKYDLFIDLPPELQETISRQARKYA----K---------VMNAS  162 (205)
T ss_pred             EEEecCchHHHHHHHHHHHHHhccC-Cccce-EEeccchHhhhcCCHHHHHHHHHHHHHHH----H---------HhCCc
Confidence            9999999999999999999985432 23344 6889999987332   2333433332211    0         12356


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .+.||+....|++.+|+.+..++
T Consensus       163 L~F~Sts~sINv~KIFK~vlAkl  185 (205)
T KOG1673|consen  163 LFFCSTSHSINVQKIFKIVLAKL  185 (205)
T ss_pred             EEEeeccccccHHHHHHHHHHHH
Confidence            79999999999999999887653

>PRK12736 elongation factor Tu; Reviewed

Probab=99.79  E-value=7.8e-18  Score=131.65  Aligned_cols=164  Identities=18%  Similarity=0.135  Sum_probs=103.3

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCc----------c---------ccCCCCCcceeEEEeCCEEEEEEEcCChhh
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERL----------V---------QHQPTQYPTSEELSIGKIKFKAFDLGGHQI   76 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~----------~---------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~   76 (193)
                      ..+++++|+++|++++|||||+++|++...          .         ....|.+.....+..++..+.++||||+..
T Consensus         8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~   87 (394)
T PRK12736          8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD   87 (394)
T ss_pred             cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH
Confidence            467789999999999999999999975210          0         111233333333444567899999999998


Q ss_pred             hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCCCCCH-HHHHHhhCCCccccC
Q 029437           77 ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIPYAASE-EELRYHLGLSNFTTG  154 (193)
Q Consensus        77 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~  154 (193)
                      +..........+|++++|+|+.+... ....+.+.....    .++| +|+++||+|+...... +.+.+++........
T Consensus        88 f~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~  162 (394)
T PRK12736         88 YVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence            87666666788999999999976422 122233333322    2677 6789999999732221 112222221110000


Q ss_pred             CCccccCCCCCcceEEEEeeeecCC--------ChhhHHHhhhhhc
Q 029437          155 KGKVNLADSNVRPLEVFMCSIVRKM--------GYGDGFKWLSQYI  192 (193)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~Sa~~g~--------gv~el~~~i~~~~  192 (193)
                      .        .....+++++||++|.        ++.++++.|.+.+
T Consensus       163 ~--------~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l  200 (394)
T PRK12736        163 F--------PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI  200 (394)
T ss_pred             C--------CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence            0        0023689999999983        5788888877653

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.78  E-value=3.9e-18  Score=133.03  Aligned_cols=157  Identities=18%  Similarity=0.199  Sum_probs=116.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccCC---CCCcceeEEEeC---CEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQP---TQYPTSEELSIG---KIKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~---t~~~~~~~~~~~---~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      ..+-+.++|+...|||||+..+-.........   |.....+.+..+   ...+.++|||||..|..++....+-+|+++
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI   83 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI   83 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence            34568999999999999999998777665433   555556666664   358999999999999999999889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      +|++++|.-.-+.+..     +++....++|+++.+||+|++.. .+.....++....+        .+..+.+...+++
T Consensus        84 LVVa~dDGv~pQTiEA-----I~hak~a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl--------~~E~~gg~v~~Vp  149 (509)
T COG0532          84 LVVAADDGVMPQTIEA-----INHAKAAGVPIVVAINKIDKPEA-NPDKVKQELQEYGL--------VPEEWGGDVIFVP  149 (509)
T ss_pred             EEEEccCCcchhHHHH-----HHHHHHCCCCEEEEEecccCCCC-CHHHHHHHHHHcCC--------CHhhcCCceEEEE
Confidence            9999988532222211     12233469999999999999743 45554444443322        2234446688999


Q ss_pred             eeeecCCChhhHHHhhh
Q 029437          173 CSIVRKMGYGDGFKWLS  189 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~  189 (193)
                      +||++|+|+++|++.|.
T Consensus       150 vSA~tg~Gi~eLL~~il  166 (509)
T COG0532         150 VSAKTGEGIDELLELIL  166 (509)
T ss_pred             eeccCCCCHHHHHHHHH
Confidence            99999999999999875

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.78  E-value=1.6e-17  Score=121.20  Aligned_cols=167  Identities=21%  Similarity=0.185  Sum_probs=106.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccC----CCCCcceeEEEeCCEEEEEEEcCChhhh------------HhhH
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ----PTQYPTSEELSIGKIKFKAFDLGGHQIA------------RRVW   81 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~~~------------~~~~   81 (193)
                      .+..+|+|+|.||+|||||.|.+.+.+.....    .|.....+.+.-+.+.+.++||||...-            .+-.
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~  149 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP  149 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence            46689999999999999999999998866432    2444455566667899999999993211            1111


Q ss_pred             HhhcccCCEEEEEEECCChhhHH--HHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC-HHHHHHhhCC----------
Q 029437           82 KDYYAKVDAVVYLVDAYDKERFA--ESKKELDALLSDEALANVPFLVLGNKIDIPYAAS-EEELRYHLGL----------  148 (193)
Q Consensus        82 ~~~~~~~d~vl~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-~~~~~~~~~~----------  148 (193)
                      ...+..+|++++|+|++++-..-  .+...+...      .++|-+++.||.|....-. .-+..+.+..          
T Consensus       150 ~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v  223 (379)
T KOG1423|consen  150 RDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV  223 (379)
T ss_pred             HHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence            23457899999999998642211  122222333      5889999999999873211 1111111110          


Q ss_pred             ----Ccccc-CCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          149 ----SNFTT-GKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       149 ----~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                          ..... .+.  .-...+....++|.+||++|+|++++.+||..+.
T Consensus       224 ~~~f~~~p~~~~~--~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa  270 (379)
T KOG1423|consen  224 QEKFTDVPSDEKW--RTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA  270 (379)
T ss_pred             HHHhccCCccccc--ccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence                01000 111  0011223456899999999999999999998753

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.78  E-value=4.7e-18  Score=136.47  Aligned_cols=125  Identities=19%  Similarity=0.192  Sum_probs=87.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCc--c-------------------c----cCCCCCcceeEEEeCCEEEEEEEcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERL--V-------------------Q----HQPTQYPTSEELSIGKIKFKAFDLGG   73 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~-------------------~----~~~t~~~~~~~~~~~~~~~~~~D~~G   73 (193)
                      +.-+|+|+|++|+|||||+++++...-  .                   +    ...+.......+.+++..+++|||||
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG   88 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG   88 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence            345899999999999999999963110  0                   0    01122233456778889999999999


Q ss_pred             hhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---HHHHHHhhCC
Q 029437           74 HQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---EEELRYHLGL  148 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~~~~  148 (193)
                      +..+.......+..+|++++|+|+++.... ....++...    ...++|+++++||+|+.....   .+++.+.++.
T Consensus        89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~----~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~  161 (526)
T PRK00741         89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC----RLRDTPIFTFINKLDRDGREPLELLDEIEEVLGI  161 (526)
T ss_pred             chhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH----HhcCCCEEEEEECCcccccCHHHHHHHHHHHhCC
Confidence            998887777778999999999999875321 233333332    224899999999999875443   2456666654

>PRK12735 elongation factor Tu; Reviewed

Probab=99.77  E-value=1.9e-17  Score=129.54  Aligned_cols=163  Identities=15%  Similarity=0.110  Sum_probs=102.0

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcC-------Cc---c---------ccCCCCCcceeEEEeCCEEEEEEEcCChhh
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDE-------RL---V---------QHQPTQYPTSEELSIGKIKFKAFDLGGHQI   76 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~-------~~---~---------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~   76 (193)
                      ..+++++|+++|++++|||||+++|++.       .+   .         ....|.......+..++..+.++||||+..
T Consensus         8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~   87 (396)
T PRK12735          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence            4577899999999999999999999852       10   0         011122223333445567899999999988


Q ss_pred             hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEE-EEEeCCCCCCCCC-HHHHHHhhCCCccccC
Q 029437           77 ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFL-VLGNKIDIPYAAS-EEELRYHLGLSNFTTG  154 (193)
Q Consensus        77 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pvi-iv~nK~D~~~~~~-~~~~~~~~~~~~~~~~  154 (193)
                      +.......+..+|++++|+|+.+... .+..+.+.....    .++|.+ +++||+|+..... .+.+.+++........
T Consensus        88 f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~  162 (396)
T PRK12735         88 YVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence            87766677789999999999987422 222233333321    367865 5799999974221 1122222211110000


Q ss_pred             CCccccCCCCCcceEEEEeeeecCC----------ChhhHHHhhhhh
Q 029437          155 KGKVNLADSNVRPLEVFMCSIVRKM----------GYGDGFKWLSQY  191 (193)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~Sa~~g~----------gv~el~~~i~~~  191 (193)
                      .        .....+++++||.+|.          ++.++++.|.+.
T Consensus       163 ~--------~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~  201 (396)
T PRK12735        163 F--------PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY  201 (396)
T ss_pred             C--------CcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence            0        0023688999999984          667777777654

>PLN03126 Elongation factor Tu; Provisional

Probab=99.76  E-value=6.7e-17  Score=128.41  Aligned_cols=156  Identities=17%  Similarity=0.101  Sum_probs=99.0

Q ss_pred             HHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-------------------ccCCCCCcceeEEEeCCEEEEEEEc
Q 029437           11 LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLV-------------------QHQPTQYPTSEELSIGKIKFKAFDL   71 (193)
Q Consensus        11 ~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~   71 (193)
                      .+.++..+..++|+++|++++|||||+++|+...-.                   ....|.+.....+..++..+.++|+
T Consensus        72 ~~~~~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDt  151 (478)
T PLN03126         72 RGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDC  151 (478)
T ss_pred             HhhhhccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEEC
Confidence            344445678899999999999999999999852110                   0111223333445567789999999


Q ss_pred             CChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCCCCC-HHHHHHhhCCC
Q 029437           72 GGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIPYAAS-EEELRYHLGLS  149 (193)
Q Consensus        72 ~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~-~~~~~~~~~~~  149 (193)
                      ||+..+.......+..+|++++|+|+.+... .+..+.+.....    .++| +++++||+|+.+... .+.+.+++...
T Consensus       152 PGh~~f~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~  226 (478)
T PLN03126        152 PGHADYVKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVREL  226 (478)
T ss_pred             CCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHHH
Confidence            9999987777777789999999999986532 223333333322    3678 788999999974211 12222222211


Q ss_pred             ccccCCCccccCCCCCcceEEEEeeeecCC
Q 029437          150 NFTTGKGKVNLADSNVRPLEVFMCSIVRKM  179 (193)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  179 (193)
                      .....     ++   ....+++++||.+|.
T Consensus       227 l~~~g-----~~---~~~~~~vp~Sa~~g~  248 (478)
T PLN03126        227 LSSYE-----FP---GDDIPIISGSALLAL  248 (478)
T ss_pred             HHhcC-----CC---cCcceEEEEEccccc
Confidence            10000     00   024788999998874

>cd04167 Snu114p Snu114p subfamily

Probab=99.75  E-value=4.4e-17  Score=117.61  Aligned_cols=108  Identities=21%  Similarity=0.223  Sum_probs=76.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcccc----------------------CCCCCcceeEEEe-----CCEEEEEEEcCCh
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQH----------------------QPTQYPTSEELSI-----GKIKFKAFDLGGH   74 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~----------------------~~t~~~~~~~~~~-----~~~~~~~~D~~G~   74 (193)
                      +|+++|++|+|||||++++........                      ..+.......+.+     ....+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            689999999999999999976443211                      0111222222222     2478999999999


Q ss_pred             hhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437           75 QIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP  134 (193)
Q Consensus        75 ~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  134 (193)
                      ..+.......+..+|++++|+|+.+..+.. ...++.....    .+.|+++++||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~-~~~~~~~~~~----~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSN-TERLIRHAIL----EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCEEEEEECcccC
Confidence            988877788889999999999998765442 2333333322    358999999999986

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.75  E-value=2.8e-17  Score=122.60  Aligned_cols=110  Identities=21%  Similarity=0.145  Sum_probs=81.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccc---------------------cCCCCCcceeEEEeCCEEEEEEEcCChhhhHhh
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQ---------------------HQPTQYPTSEELSIGKIKFKAFDLGGHQIARRV   80 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~---------------------~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~   80 (193)
                      +|+++|++|+|||||++++.......                     ...+.......+.+.+..+.+|||||+..+...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            58999999999999999986432110                     122334455667788899999999999888777


Q ss_pred             HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437           81 WKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA  136 (193)
Q Consensus        81 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  136 (193)
                      ....+..+|++++|+|+++.... .....+....    ..++|+++++||+|+...
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~-~~~~~~~~~~----~~~~p~iivvNK~D~~~~  131 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEV-GTEKLWEFAD----EAGIPRIIFINKMDRERA  131 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCH-HHHHHHHHHH----HcCCCEEEEEECCccCCC
Confidence            77788999999999999876443 2233333332    247899999999999754

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.75  E-value=7.2e-17  Score=119.94  Aligned_cols=123  Identities=20%  Similarity=0.109  Sum_probs=87.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc--c-------------------ccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhh
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERL--V-------------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRV   80 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~--~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~   80 (193)
                      +|+++|++|+|||||++++....-  .                   ....|.......+.+.+..+.++||||+..+...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            589999999999999999963210  0                   1122445556778888999999999999888877


Q ss_pred             HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC---CHHHHHHhhCCC
Q 029437           81 WKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA---SEEELRYHLGLS  149 (193)
Q Consensus        81 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~---~~~~~~~~~~~~  149 (193)
                      ....++.+|++++|+|+.+...- .....+.....    .++|+++++||+|+....   ..+++.+.++..
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~-~t~~~~~~~~~----~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~  147 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEP-QTETVWRQADR----YNVPRIAFVNKMDRTGADFFRVVEQIREKLGAN  147 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCH-HHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCC
Confidence            78888999999999999775321 22333333322    478999999999997532   134455555543

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.75  E-value=4.5e-17  Score=128.82  Aligned_cols=155  Identities=14%  Similarity=0.073  Sum_probs=101.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC--cc--------------------------------ccCCCCCcceeEEEeC
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDER--LV--------------------------------QHQPTQYPTSEELSIG   62 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~   62 (193)
                      .+.+++|+++|+.++|||||+.+|+...  ..                                ....|.+.....+.++
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~   83 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence            4677899999999999999999986411  00                                0112334445556777


Q ss_pred             CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhh---H---HHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCC
Q 029437           63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKER---F---AESKKELDALLSDEALANVP-FLVLGNKIDIPY  135 (193)
Q Consensus        63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~  135 (193)
                      +..++++|+||+..|...+...+..+|++++|+|+.+..-   +   .+..+.+....    ..++| +|+++||+|...
T Consensus        84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~----~~gi~~iiv~vNKmD~~~  159 (446)
T PTZ00141         84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAF----TLGVKQMIVCINKMDDKT  159 (446)
T ss_pred             CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHH----HcCCCeEEEEEEcccccc
Confidence            8899999999999998877778899999999999976420   0   12223333221    13666 679999999542


Q ss_pred             ----CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhh
Q 029437          136 ----AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGD  183 (193)
Q Consensus       136 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  183 (193)
                          ....+++.+++...+......        ...++++++|+.+|.|+.+
T Consensus       160 ~~~~~~~~~~i~~~i~~~l~~~g~~--------~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        160 VNYSQERYDEIKKEVSAYLKKVGYN--------PEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             chhhHHHHHHHHHHHHHHHHhcCCC--------cccceEEEeecccCCCccc
Confidence                122333333333222100000        0247899999999999864

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.75  E-value=5.5e-17  Score=129.23  Aligned_cols=155  Identities=17%  Similarity=0.060  Sum_probs=97.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc--c----------------------------------cCCCCCcceeEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV--Q----------------------------------HQPTQYPTSEELS   60 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~----------------------------------~~~t~~~~~~~~~   60 (193)
                      .+..++|+++|++++|||||+.+|+...-.  .                                  ...|.+.....+.
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            577899999999999999999998643210  0                                  0012233334455


Q ss_pred             eCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC--
Q 029437           61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS--  138 (193)
Q Consensus        61 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~--  138 (193)
                      .++..+.++||||+..+.......+..+|++++|+|+.+...-+ ..+.+. +.....  ..|+|+++||+|+.....  
T Consensus       104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~q-t~~~~~-l~~~lg--~~~iIvvvNKiD~~~~~~~~  179 (474)
T PRK05124        104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQ-TRRHSF-IATLLG--IKHLVVAVNKMDLVDYSEEV  179 (474)
T ss_pred             cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcccc-chHHHH-HHHHhC--CCceEEEEEeeccccchhHH
Confidence            66789999999999988665555678999999999997652111 111111 111111  247899999999974221  


Q ss_pred             HHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhH
Q 029437          139 EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDG  184 (193)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el  184 (193)
                      .+++.+++.....  ..       ......+++++||++|.|++++
T Consensus       180 ~~~i~~~l~~~~~--~~-------~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        180 FERIREDYLTFAE--QL-------PGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHH--hc-------CCCCCceEEEEEeecCCCcccc
Confidence            2233333321000  00       0002468999999999999763

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.74  E-value=5.7e-17  Score=128.19  Aligned_cols=154  Identities=15%  Similarity=0.055  Sum_probs=99.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCc--c--------------------------------ccCCCCCcceeEEEeC
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERL--V--------------------------------QHQPTQYPTSEELSIG   62 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~--~--------------------------------~~~~t~~~~~~~~~~~   62 (193)
                      .+.+++|+++|+.++|||||+.+|+...-  .                                ....|.......+.++
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~   83 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT   83 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence            46789999999999999999988853110  0                                0112333344556667


Q ss_pred             CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhH-------HHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCC
Q 029437           63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERF-------AESKKELDALLSDEALANVP-FLVLGNKIDIP  134 (193)
Q Consensus        63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~  134 (193)
                      +..++++|+||+..|...+...+..+|++++|+|+.+.. +       .+..+.+... .   ..++| +|+++||+|+.
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~eh~~~~-~---~~gi~~iIV~vNKmD~~  158 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTREHALLA-F---TLGVKQMICCCNKMDAT  158 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHHHHHHH-H---HcCCCcEEEEEEcccCC
Confidence            889999999999999888888889999999999998631 2       1222322222 1   13664 68899999986


Q ss_pred             CC-CC---HHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhh
Q 029437          135 YA-AS---EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGD  183 (193)
Q Consensus       135 ~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  183 (193)
                      .. ..   .+++.+++.....+....        ...++++++||.+|.|+.+
T Consensus       159 ~~~~~~~~~~~i~~ei~~~l~~~g~~--------~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        159 TPKYSKARYDEIVKEVSSYLKKVGYN--------PDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHcCCC--------cccceEEEEeccccccccc
Confidence            21 11   222333332111000000        0236899999999999853

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=1.3e-17  Score=113.52  Aligned_cols=155  Identities=19%  Similarity=0.318  Sum_probs=125.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEeC----CEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELSIG----KIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~----~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      ..++++++|+.|.||||+.+++..++|.. ..+|.+...+...+.    .+++..|||.|++.+......++-+..+.++
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii   88 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII   88 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence            56899999999999999999999999987 556888877766543    3899999999999998888888888899999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      ++|+...-++.++..|.+++....  .++|+++++||.|........     ....+            .....+.+++.
T Consensus        89 mFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~~k~-----k~v~~------------~rkknl~y~~i  149 (216)
T KOG0096|consen   89 MFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARKVKA-----KPVSF------------HRKKNLQYYEI  149 (216)
T ss_pred             EeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceecccccccc-----cccee------------eecccceeEEe
Confidence            999999999999999999997643  479999999999986322111     11111            01134678999


Q ss_pred             eeecCCChhhHHHhhhhhc
Q 029437          174 SIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~~  192 (193)
                      ||+++.|.+.=|-|+.+++
T Consensus       150 Saksn~NfekPFl~LarKl  168 (216)
T KOG0096|consen  150 SAKSNYNFERPFLWLARKL  168 (216)
T ss_pred             ecccccccccchHHHhhhh
Confidence            9999999999999987754

>CHL00071 tufA elongation factor Tu

Probab=99.73  E-value=1.4e-16  Score=125.19  Aligned_cols=151  Identities=17%  Similarity=0.090  Sum_probs=95.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-------------------ccCCCCCcceeEEEeCCEEEEEEEcCChhhh
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV-------------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQIA   77 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~   77 (193)
                      .+..++|+++|++++|||||+++|++..-.                   ....|.......+..++..+.++||||+..+
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~   88 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence            467799999999999999999999864110                   0111233333344556778999999999888


Q ss_pred             HhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCCCCC-HHHHHHhhCCCccccCC
Q 029437           78 RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGK  155 (193)
Q Consensus        78 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~  155 (193)
                      .......+..+|++++|+|+..... .+..+.+.....    .++| +|+++||+|+..... .+.+.+++.........
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~  163 (409)
T CHL00071         89 VKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF  163 (409)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            7766777789999999999976422 223333333322    3678 778999999974222 12222222221100000


Q ss_pred             CccccCCCCCcceEEEEeeeecCCC
Q 029437          156 GKVNLADSNVRPLEVFMCSIVRKMG  180 (193)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~Sa~~g~g  180 (193)
                           .   ....+++++||.+|.+
T Consensus       164 -----~---~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        164 -----P---GDDIPIVSGSALLALE  180 (409)
T ss_pred             -----C---CCcceEEEcchhhccc
Confidence                 0   0236899999999864

>PRK13351 elongation factor G; Reviewed

Probab=99.73  E-value=1.5e-16  Score=132.48  Aligned_cols=114  Identities=20%  Similarity=0.090  Sum_probs=87.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCc-------------c--------ccCCCCCcceeEEEeCCEEEEEEEcCChhh
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERL-------------V--------QHQPTQYPTSEELSIGKIKFKAFDLGGHQI   76 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~-------------~--------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~   76 (193)
                      +...+|+|+|+.|+|||||++++....-             .        ....|.......+.+.+..+.+|||||+..
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d   85 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID   85 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence            3456999999999999999999974210             0        123355556667888899999999999999


Q ss_pred             hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437           77 ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA  136 (193)
Q Consensus        77 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  136 (193)
                      +.......++.+|++++|+|+++....+. ...+.....    .++|+++++||+|+...
T Consensus        86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~~~  140 (687)
T PRK13351         86 FTGEVERSLRVLDGAVVVFDAVTGVQPQT-ETVWRQADR----YGIPRLIFINKMDRVGA  140 (687)
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCCCHHH-HHHHHHHHh----cCCCEEEEEECCCCCCC
Confidence            88888888999999999999988755433 233433322    37899999999999754

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.73  E-value=4.2e-17  Score=116.32  Aligned_cols=160  Identities=14%  Similarity=0.169  Sum_probs=92.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc---cee--EEEe-CCEEEEEEEcCChhhhH----h-hHHhhccc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP---TSE--ELSI-GKIKFKAFDLGGHQIAR----R-VWKDYYAK   87 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~---~~~--~~~~-~~~~~~~~D~~G~~~~~----~-~~~~~~~~   87 (193)
                      +++|+++|++|+|||||+|++.+..... ..++.+.   ...  .+.. ....+.+|||||.....    . +....+..
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            3689999999999999999999865432 1111111   111  1111 12368999999964321    1 12223567


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---------HHHHHHhhCCCccccCCCcc
Q 029437           88 VDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---------EEELRYHLGLSNFTTGKGKV  158 (193)
Q Consensus        88 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~~~  158 (193)
                      +|.++++.+. .   +......+...+..   .+.|+++|+||+|+.....         .+++.+.+.....+.     
T Consensus        81 ~d~~l~v~~~-~---~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~-----  148 (197)
T cd04104          81 YDFFIIISST-R---FSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLEN-----  148 (197)
T ss_pred             cCEEEEEeCC-C---CCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHH-----
Confidence            8998888543 2   33344333333333   2689999999999952111         222222222111100     


Q ss_pred             ccCCCCCcceEEEEeeee--cCCChhhHHHhhhhhc
Q 029437          159 NLADSNVRPLEVFMCSIV--RKMGYGDGFKWLSQYI  192 (193)
Q Consensus       159 ~~~~~~~~~~~~~~~Sa~--~g~gv~el~~~i~~~~  192 (193)
                       +........+++.+|+.  .+.|+..+.+.|...+
T Consensus       149 -~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l  183 (197)
T cd04104         149 -LQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDL  183 (197)
T ss_pred             -HHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHh
Confidence             00111234579999998  6899999999887764

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.73  E-value=1.5e-16  Score=124.50  Aligned_cols=160  Identities=16%  Similarity=0.108  Sum_probs=97.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC-------cc------------ccCCCCCcceeEEEeCCEEEEEEEcCChhhh
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDER-------LV------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQIA   77 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~-------~~------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~   77 (193)
                      .+++++|+++|+.++|||||+++|++..       +.            ....|.......+..++..+.+|||||++.|
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f   88 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence            4567999999999999999999997320       00            1222444444444456678999999999988


Q ss_pred             HhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEE-EEEeCCCCCCCCC-HHHHHHhhCCCccccCC
Q 029437           78 RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFL-VLGNKIDIPYAAS-EEELRYHLGLSNFTTGK  155 (193)
Q Consensus        78 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pvi-iv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~  155 (193)
                      ..........+|++++|+|+.+... .+..+.+..+..    .++|.+ +++||+|+.+... .+.+.+++.........
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~  163 (394)
T TIGR00485        89 VKNMITGAAQMDGAILVVSATDGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF  163 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence            7666666678999999999987422 122233333322    266755 6899999974221 11122122111100000


Q ss_pred             CccccCCCCCcceEEEEeeeecCC-C-------hhhHHHhhh
Q 029437          156 GKVNLADSNVRPLEVFMCSIVRKM-G-------YGDGFKWLS  189 (193)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~Sa~~g~-g-------v~el~~~i~  189 (193)
                              ....++++++||.+|. |       +.++++.|.
T Consensus       164 --------~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~  197 (394)
T TIGR00485       164 --------PGDDTPIIRGSALKALEGDAEWEAKILELMDAVD  197 (394)
T ss_pred             --------CccCccEEECccccccccCCchhHhHHHHHHHHH
Confidence                    0022689999999875 3       345555554

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.73  E-value=1.1e-16  Score=125.16  Aligned_cols=163  Identities=16%  Similarity=0.107  Sum_probs=102.8

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-------------------ccCCCCCcceeEEEeCCEEEEEEEcCChhh
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLV-------------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQI   76 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~   76 (193)
                      ..+.+++|+++|++++|||||+++|++....                   ....|.......+..++..+.++||||+..
T Consensus         8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~   87 (396)
T PRK00049          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence            4577899999999999999999999863110                   111233333334444667899999999988


Q ss_pred             hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEE-EEEeCCCCCCCCC-HHHHHHhhCCCccccC
Q 029437           77 ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFL-VLGNKIDIPYAAS-EEELRYHLGLSNFTTG  154 (193)
Q Consensus        77 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pvi-iv~nK~D~~~~~~-~~~~~~~~~~~~~~~~  154 (193)
                      +.......+..+|++++|+|+.++.. .+..+.+.....    .++|.+ +++||+|+..... .+.+.+++........
T Consensus        88 f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~  162 (396)
T PRK00049         88 YVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence            87766677789999999999976522 222333333322    367876 6899999974211 1122222221110000


Q ss_pred             CCccccCCCCCcceEEEEeeeecCC----------ChhhHHHhhhhh
Q 029437          155 KGKVNLADSNVRPLEVFMCSIVRKM----------GYGDGFKWLSQY  191 (193)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~Sa~~g~----------gv~el~~~i~~~  191 (193)
                      .        .....+++++||.+|.          |+..+++.|...
T Consensus       163 ~--------~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~  201 (396)
T PRK00049        163 F--------PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY  201 (396)
T ss_pred             C--------CccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence            0        0023678999999875          466777777653

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=3.7e-17  Score=127.35  Aligned_cols=152  Identities=18%  Similarity=0.134  Sum_probs=116.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc------------------ccCCCCCcceeEEEeCC---EEEEEEEcCChhhhHhh
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLV------------------QHQPTQYPTSEELSIGK---IKFKAFDLGGHQIARRV   80 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~------------------~~~~t~~~~~~~~~~~~---~~~~~~D~~G~~~~~~~   80 (193)
                      ++.|+-+-.-|||||..+++...-.                  +...|+......+.+.+   +.++++|||||..|...
T Consensus        62 NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E  141 (650)
T KOG0462|consen   62 NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE  141 (650)
T ss_pred             ceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccce
Confidence            6889999999999999998643211                  12234444555666666   89999999999999988


Q ss_pred             HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCcccc
Q 029437           81 WKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNL  160 (193)
Q Consensus        81 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (193)
                      ....+..++++|+|+|++..-.-+....++..+-     .+.-+|.|+||+|++.+ ++++...+...-+.         
T Consensus       142 VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~a-dpe~V~~q~~~lF~---------  206 (650)
T KOG0462|consen  142 VSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSA-DPERVENQLFELFD---------  206 (650)
T ss_pred             ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCC-CHHHHHHHHHHHhc---------
Confidence            8888899999999999988766677777777763     37889999999999754 45554444432220         


Q ss_pred             CCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          161 ADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       161 ~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                          ....+++.+||++|.|+++++++|.+++
T Consensus       207 ----~~~~~~i~vSAK~G~~v~~lL~AII~rV  234 (650)
T KOG0462|consen  207 ----IPPAEVIYVSAKTGLNVEELLEAIIRRV  234 (650)
T ss_pred             ----CCccceEEEEeccCccHHHHHHHHHhhC
Confidence                0235789999999999999999999876

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.73  E-value=1.3e-17  Score=120.09  Aligned_cols=178  Identities=20%  Similarity=0.240  Sum_probs=113.6

Q ss_pred             HhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCcc----ccCCCCCcceeEE----------------------------
Q 029437           12 ASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLV----QHQPTQYPTSEEL----------------------------   59 (193)
Q Consensus        12 ~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~----~~~~t~~~~~~~~----------------------------   59 (193)
                      +..+..++++.|+++|..||||||++.+|...-..    ++....++....+                            
T Consensus        11 ~a~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGg   90 (366)
T KOG1532|consen   11 EASGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGG   90 (366)
T ss_pred             cccccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcc
Confidence            34556778899999999999999999998533211    1111111111110                            


Q ss_pred             ---------------------EeCCEEEEEEEcCChhhh------HhhHHhhc--ccCCEEEEEEECC---ChhhHHHHH
Q 029437           60 ---------------------SIGKIKFKAFDLGGHQIA------RRVWKDYY--AKVDAVVYLVDAY---DKERFAESK  107 (193)
Q Consensus        60 ---------------------~~~~~~~~~~D~~G~~~~------~~~~~~~~--~~~d~vl~v~d~~---~~~~~~~~~  107 (193)
                                           ..+..++.++||||+-..      .....+.+  ....+++||+|..   ++.+|-...
T Consensus        91 I~TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNM  170 (366)
T KOG1532|consen   91 IVTSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNM  170 (366)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHH
Confidence                                 011256899999998542      12222222  2457889999974   455565555


Q ss_pred             HHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCcc----------cc-CCCccccCCCCCcceEEEEeeee
Q 029437          108 KELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNF----------TT-GKGKVNLADSNVRPLEVFMCSIV  176 (193)
Q Consensus       108 ~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~Sa~  176 (193)
                      -+...++..   .+.|.|++.||+|+....-..++...++....          .. .+.++.......+..+.+.+||.
T Consensus       171 lYAcSilyk---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~  247 (366)
T KOG1532|consen  171 LYACSILYK---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSV  247 (366)
T ss_pred             HHHHHHHHh---ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecc
Confidence            555566554   68999999999999876655565555542211          11 22233333444567899999999


Q ss_pred             cCCChhhHHHhhhhhc
Q 029437          177 RKMGYGDGFKWLSQYI  192 (193)
Q Consensus       177 ~g~gv~el~~~i~~~~  192 (193)
                      +|.|.+++|.++.+.+
T Consensus       248 tG~G~ddf~~av~~~v  263 (366)
T KOG1532|consen  248 TGEGFDDFFTAVDESV  263 (366)
T ss_pred             cCCcHHHHHHHHHHHH
Confidence            9999999999998764

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.72  E-value=1.4e-16  Score=131.37  Aligned_cols=153  Identities=16%  Similarity=0.060  Sum_probs=96.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc------------------------------------cCCCCCcceeEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ------------------------------------HQPTQYPTSEELS   60 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~------------------------------------~~~t~~~~~~~~~   60 (193)
                      .+..++|+++|++++|||||+++|+...-.-                                    ...|.+.....+.
T Consensus        21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~  100 (632)
T PRK05506         21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA  100 (632)
T ss_pred             CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence            4567899999999999999999987532110                                    0112233344556


Q ss_pred             eCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--C
Q 029437           61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--S  138 (193)
Q Consensus        61 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~  138 (193)
                      +++..+.++||||+..+...+...+..+|++++|+|+.+...- +..+.+.. +...  ...|+++++||+|+....  .
T Consensus       101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~-~t~e~~~~-~~~~--~~~~iivvvNK~D~~~~~~~~  176 (632)
T PRK05506        101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLT-QTRRHSFI-ASLL--GIRHVVLAVNKMDLVDYDQEV  176 (632)
T ss_pred             cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccc-cCHHHHHH-HHHh--CCCeEEEEEEecccccchhHH
Confidence            6678899999999998866566677899999999999765221 11111111 1111  235789999999997321  1


Q ss_pred             HHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhh
Q 029437          139 EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGD  183 (193)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  183 (193)
                      .+++..++....  ..        ......+++++||++|.|+++
T Consensus       177 ~~~i~~~i~~~~--~~--------~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        177 FDEIVADYRAFA--AK--------LGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHH--HH--------cCCCCccEEEEecccCCCccc
Confidence            222322221000  00        000235689999999999874

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.72  E-value=8.2e-17  Score=126.34  Aligned_cols=149  Identities=19%  Similarity=0.096  Sum_probs=94.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc------------------------------------ccCCCCCcceeEEEeCCE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLV------------------------------------QHQPTQYPTSEELSIGKI   64 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~------------------------------------~~~~t~~~~~~~~~~~~~   64 (193)
                      ++|+++|++++|||||+.+++...-.                                    ....|.+.....+.+++.
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            48999999999999999998532200                                    011133444555666778


Q ss_pred             EEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC--HHHH
Q 029437           65 KFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS--EEEL  142 (193)
Q Consensus        65 ~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~--~~~~  142 (193)
                      .+.++||||+..+...+...+..+|++++|+|+.....- +..+.+... ...  ...++++++||+|+.....  .+++
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~-qt~~~~~~~-~~~--~~~~iivviNK~D~~~~~~~~~~~i  156 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLE-QTRRHSYIA-SLL--GIRHVVLAVNKMDLVDYDEEVFENI  156 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcc-ccHHHHHHH-HHc--CCCcEEEEEEecccccchHHHHHHH
Confidence            999999999998876666678899999999999765321 111222211 111  1346899999999974221  1122


Q ss_pred             HHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhh
Q 029437          143 RYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGD  183 (193)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  183 (193)
                      .+.+.... . ..        .....+++++||++|.|+++
T Consensus       157 ~~~~~~~~-~-~~--------~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       157 KKDYLAFA-E-QL--------GFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHH-H-Hc--------CCCCccEEEeecccCCCCcc
Confidence            22221100 0 00        00235799999999999975

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.72  E-value=2.6e-19  Score=121.36  Aligned_cols=161  Identities=18%  Similarity=0.155  Sum_probs=125.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC---EEEEEEEcCChhhhHhhHHhhcccCCE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK---IKFKAFDLGGHQIARRVWKDYYAKVDA   90 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~---~~~~~~D~~G~~~~~~~~~~~~~~~d~   90 (193)
                      +.+-++++|+|..|+|||+++.++....|.. +..|++.  ....+.+++   +++.+||..|++++..+..-+++.+++
T Consensus        22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~  101 (229)
T KOG4423|consen   22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG  101 (229)
T ss_pred             hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence            3567899999999999999999998887765 3344443  333344443   578999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcC---CCCCCCcEEEEEeCCCCCCCCCHH--HHHHhhCCCccccCCCccccCCCCC
Q 029437           91 VVYLVDAYDKERFAESKKELDALLSD---EALANVPFLVLGNKIDIPYAASEE--ELRYHLGLSNFTTGKGKVNLADSNV  165 (193)
Q Consensus        91 vl~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~pviiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  165 (193)
                      ..+|||+++..+|+....|..++...   ......|++++.||+|+......+  ...+++....               
T Consensus       102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~ken---------------  166 (229)
T KOG4423|consen  102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKEN---------------  166 (229)
T ss_pred             eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhcc---------------
Confidence            99999999999999999998887543   344578999999999997433222  3444444333               


Q ss_pred             cceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          166 RPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       166 ~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ....++++|+|.+.+++|.-+.+++++
T Consensus       167 gf~gwtets~Kenkni~Ea~r~lVe~~  193 (229)
T KOG4423|consen  167 GFEGWTETSAKENKNIPEAQRELVEKI  193 (229)
T ss_pred             CccceeeeccccccChhHHHHHHHHHH
Confidence            557799999999999999988887653

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.71  E-value=2.2e-16  Score=124.67  Aligned_cols=163  Identities=18%  Similarity=0.124  Sum_probs=103.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc------cCCCC--Cccee---------------EE----------E---
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ------HQPTQ--YPTSE---------------EL----------S---   60 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~------~~~t~--~~~~~---------------~~----------~---   60 (193)
                      .+.+++|+++|+...|||||+.+|++.....      ...|.  ++...               ..          +   
T Consensus        31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (460)
T PTZ00327         31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG  110 (460)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence            4678999999999999999999998654221      11111  11100               00          0   


Q ss_pred             ---eCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC
Q 029437           61 ---IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA  137 (193)
Q Consensus        61 ---~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~  137 (193)
                         .....+.++|+||++.+...+...+..+|++++|+|+.++....+..+.+. ++...  .-.|+|+++||+|+.+..
T Consensus       111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~l--gi~~iIVvlNKiDlv~~~  187 (460)
T PTZ00327        111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIM--KLKHIIILQNKIDLVKEA  187 (460)
T ss_pred             ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHc--CCCcEEEEEecccccCHH
Confidence               002468999999999987776777789999999999986411112222222 22221  134689999999997433


Q ss_pred             CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          138 SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ..++..+++.... ..         ......+++++||++|.|+++|++.|...+
T Consensus       188 ~~~~~~~ei~~~l-~~---------~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l  232 (460)
T PTZ00327        188 QAQDQYEEIRNFV-KG---------TIADNAPIIPISAQLKYNIDVVLEYICTQI  232 (460)
T ss_pred             HHHHHHHHHHHHH-Hh---------hccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence            3223222222111 00         001346899999999999999999998644

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.71  E-value=6.3e-16  Score=101.08  Aligned_cols=103  Identities=26%  Similarity=0.415  Sum_probs=71.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcccc----CCCCCcceeEEEeCCEEEEEEEcCChhhh---------HhhHHhhcccC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQH----QPTQYPTSEELSIGKIKFKAFDLGGHQIA---------RRVWKDYYAKV   88 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~G~~~~---------~~~~~~~~~~~   88 (193)
                      +|+|+|.+|+|||||+|+|++......    ..|.......+.+.+..+.++||||....         .......+..+
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~   80 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS   80 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence            689999999999999999998653322    22444445566788889999999995321         11223334889


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeC
Q 029437           89 DAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNK  130 (193)
Q Consensus        89 d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK  130 (193)
                      |++++|+|+.++.. ......+..+ +    .+.|+++|+||
T Consensus        81 d~ii~vv~~~~~~~-~~~~~~~~~l-~----~~~~~i~v~NK  116 (116)
T PF01926_consen   81 DLIIYVVDASNPIT-EDDKNILREL-K----NKKPIILVLNK  116 (116)
T ss_dssp             SEEEEEEETTSHSH-HHHHHHHHHH-H----TTSEEEEEEES
T ss_pred             CEEEEEEECCCCCC-HHHHHHHHHH-h----cCCCEEEEEcC
Confidence            99999999877422 2222333333 2    58999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>smart00275 G_alpha G protein alpha subunit

Probab=99.71  E-value=6.9e-16  Score=118.24  Aligned_cols=134  Identities=18%  Similarity=0.286  Sum_probs=97.2

Q ss_pred             CCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCC----------hhhHHHHHHHHHHHHcCCCCC
Q 029437           51 TQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYD----------KERFAESKKELDALLSDEALA  120 (193)
Q Consensus        51 t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~  120 (193)
                      |.|.....+.+++..+.+||++|+...+..|.+++.+++++++|+|+++          ...+.+....+..+++.....
T Consensus       171 T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~  250 (342)
T smart00275      171 TTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA  250 (342)
T ss_pred             ccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc
Confidence            4455666677788899999999999999999999999999999999986          346788888888998887778


Q ss_pred             CCcEEEEEeCCCCCC----CCC-------------HHHHHHhhCCCccccCCCccccCCC-CCcceEEEEeeeecCCChh
Q 029437          121 NVPFLVLGNKIDIPY----AAS-------------EEELRYHLGLSNFTTGKGKVNLADS-NVRPLEVFMCSIVRKMGYG  182 (193)
Q Consensus       121 ~~pviiv~nK~D~~~----~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~g~gv~  182 (193)
                      ++|+++++||.|+..    ...             .++..+.+...+..       +... ..+.+-.+.++|..-.++.
T Consensus       251 ~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~-------~~~~~~~r~~y~h~t~a~Dt~~~~  323 (342)
T smart00275      251 NTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLR-------LNRNSSRKSIYHHFTCATDTRNIR  323 (342)
T ss_pred             CCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHH-------hccCCCCceEEEEEeeecccHHHH
Confidence            999999999999761    111             11111111111110       1110 1144667789999999999


Q ss_pred             hHHHhhhhh
Q 029437          183 DGFKWLSQY  191 (193)
Q Consensus       183 el~~~i~~~  191 (193)
                      .+|+.+.+.
T Consensus       324 ~v~~~v~~~  332 (342)
T smart00275      324 VVFDAVKDI  332 (342)
T ss_pred             HHHHHHHHH
Confidence            999877654

Subunit of G proteins that contains the guanine nucleotide binding site

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.71  E-value=7.2e-16  Score=116.70  Aligned_cols=76  Identities=22%  Similarity=0.233  Sum_probs=53.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCccc-c--CCCCCcceeEEEe------------------------CCEEEEEEEcCCh-
Q 029437           23 ILFLGLDNAGKTTLLHMLKDERLVQ-H--QPTQYPTSEELSI------------------------GKIKFKAFDLGGH-   74 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~~~~~~~-~--~~t~~~~~~~~~~------------------------~~~~~~~~D~~G~-   74 (193)
                      |+++|.||+|||||++++++..+.. .  ..|..++.+...+                        ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            5799999999999999999876421 1  1233444332221                        2368999999997 


Q ss_pred             ---hhhHhhH---HhhcccCCEEEEEEECC
Q 029437           75 ---QIARRVW---KDYYAKVDAVVYLVDAY   98 (193)
Q Consensus        75 ---~~~~~~~---~~~~~~~d~vl~v~d~~   98 (193)
                         .....+.   ...++.+|++++|+|+.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               3333333   33578999999999996

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>TIGR00503 prfC peptide chain release factor 3

Probab=99.70  E-value=3.6e-16  Score=125.71  Aligned_cols=125  Identities=18%  Similarity=0.206  Sum_probs=84.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC-cccc------------------------CCCCCcceeEEEeCCEEEEEEEcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER-LVQH------------------------QPTQYPTSEELSIGKIKFKAFDLGG   73 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~------------------------~~t~~~~~~~~~~~~~~~~~~D~~G   73 (193)
                      +..+|+|+|++|+|||||+++++... ....                        ..+.......+.+.+..+++|||||
T Consensus        10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG   89 (527)
T TIGR00503        10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG   89 (527)
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence            44599999999999999999985311 1100                        0111223355677889999999999


Q ss_pred             hhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---HHHHHHhhCC
Q 029437           74 HQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---EEELRYHLGL  148 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~~~~  148 (193)
                      +..+.......+..+|++++|+|+++.-. .....++... .   ..++|+++++||+|+.....   .+++.+.++.
T Consensus        90 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~-~---~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~  162 (527)
T TIGR00503        90 HEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVT-R---LRDTPIFTFMNKLDRDIRDPLELLDEVENELKI  162 (527)
T ss_pred             hhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHH-H---hcCCCEEEEEECccccCCCHHHHHHHHHHHhCC
Confidence            98887766777899999999999987421 1223333322 2   24789999999999864321   2334555543

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=4.6e-16  Score=120.11  Aligned_cols=166  Identities=18%  Similarity=0.159  Sum_probs=109.8

Q ss_pred             hCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccC----CCCCcceeEEEeCCEEEEEEEcCChhhhH---------hh
Q 029437           14 LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ----PTQYPTSEELSIGKIKFKAFDLGGHQIAR---------RV   80 (193)
Q Consensus        14 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~~~~---------~~   80 (193)
                      +...+..+.|+|+|+||+|||||+|+|.+.+-.-..    .|.+.-...+...+.++.+.||+|..+-.         .-
T Consensus       262 ~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~r  341 (531)
T KOG1191|consen  262 IERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIER  341 (531)
T ss_pred             HHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHH
Confidence            334567799999999999999999999998865433    36666777888999999999999965511         11


Q ss_pred             HHhhcccCCEEEEEEEC--CChhhHHHHHHHHHHHH-----cCCCCCCCcEEEEEeCCCCCCCCCHHH--HHHhhCCCcc
Q 029437           81 WKDYYAKVDAVVYLVDA--YDKERFAESKKELDALL-----SDEALANVPFLVLGNKIDIPYAASEEE--LRYHLGLSNF  151 (193)
Q Consensus        81 ~~~~~~~~d~vl~v~d~--~~~~~~~~~~~~~~~~~-----~~~~~~~~pviiv~nK~D~~~~~~~~~--~~~~~~~~~~  151 (193)
                      ....+..+|++++|+|+  .+.++-..+.+.+...-     ..+.....|++++.||.|+....+...  .......   
T Consensus       342 A~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~---  418 (531)
T KOG1191|consen  342 ARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA---  418 (531)
T ss_pred             HHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc---
Confidence            13345789999999999  33333333333333331     112335689999999999985422110  0000000   


Q ss_pred             ccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          152 TTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                         ....       ......++|+++++|+++|.+.|.+.+
T Consensus       419 ---~~~~-------~~~i~~~vs~~tkeg~~~L~~all~~~  449 (531)
T KOG1191|consen  419 ---EGRS-------VFPIVVEVSCTTKEGCERLSTALLNIV  449 (531)
T ss_pred             ---ccCc-------ccceEEEeeechhhhHHHHHHHHHHHH
Confidence               0000       112345699999999999999887653

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.70  E-value=5.6e-16  Score=111.88  Aligned_cols=108  Identities=21%  Similarity=0.143  Sum_probs=78.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc--c-----------------ccCCCCCcceeEEEeC----------CEEEEEEEcC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERL--V-----------------QHQPTQYPTSEELSIG----------KIKFKAFDLG   72 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~--~-----------------~~~~t~~~~~~~~~~~----------~~~~~~~D~~   72 (193)
                      +|+++|+.++|||||+.+|....-  .                 ....|.......+.+.          +..+++||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            689999999999999999864321  0                 0111222232233333          6789999999


Q ss_pred             ChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437           73 GHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP  134 (193)
Q Consensus        73 G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  134 (193)
                      |+..+.......+..+|++++|+|+.+....+ ....+.....    .++|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~-t~~~l~~~~~----~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQ-TETVLRQALK----ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHH-HHHHHHHHHH----cCCCEEEEEECCCcc
Confidence            99999888888899999999999998865433 2334444432    368999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PLN03127 Elongation factor Tu; Provisional

Probab=99.70  E-value=1.3e-15  Score=120.40  Aligned_cols=163  Identities=18%  Similarity=0.139  Sum_probs=100.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC------Cc--c-----------ccCCCCCcceeEEEeCCEEEEEEEcCChhhh
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDE------RL--V-----------QHQPTQYPTSEELSIGKIKFKAFDLGGHQIA   77 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~------~~--~-----------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~   77 (193)
                      .+.+++|+++|+.++|||||+++|.+.      ..  .           ....|.+.....+..++..+.++||||+..+
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f  137 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY  137 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence            568899999999999999999999622      10  0           0122444444455556778999999999887


Q ss_pred             HhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCCCCCH-HHHHHhhCCCccccCC
Q 029437           78 RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIPYAASE-EELRYHLGLSNFTTGK  155 (193)
Q Consensus        78 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~  155 (193)
                      ..........+|++++|+|+.+... .+..+.+.....    .++| +|+++||+|+...... +.+.+++.... .. .
T Consensus       138 ~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~----~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l-~~-~  210 (447)
T PLN03127        138 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVVFLNKVDVVDDEELLELVEMELRELL-SF-Y  210 (447)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHH-HH-h
Confidence            6655556678999999999976532 122233332221    3688 5789999999742111 11221211110 00 0


Q ss_pred             CccccCCCCCcceEEEEeeee---cCCC-------hhhHHHhhhhhc
Q 029437          156 GKVNLADSNVRPLEVFMCSIV---RKMG-------YGDGFKWLSQYI  192 (193)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~Sa~---~g~g-------v~el~~~i~~~~  192 (193)
                         ..   ....++++++||.   +|.|       +.+|+++|.+.+
T Consensus       211 ---~~---~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        211 ---KF---PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             ---CC---CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence               00   0023677888775   4555       678888876543

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.69  E-value=3.3e-17  Score=118.31  Aligned_cols=173  Identities=18%  Similarity=0.177  Sum_probs=111.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccC---CCCCc-ceeEEEeCCEEEEEEEcCChhh-------hHhhHHhhc
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ---PTQYP-TSEELSIGKIKFKAFDLGGHQI-------ARRVWKDYY   85 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~---~t~~~-~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~   85 (193)
                      .+.+++|+++|..|+||||++|+++.++..+..   .+..+ ......+....+.+||+||...       ++.....++
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l  115 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL  115 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence            457899999999999999999999976544322   22222 2223345557899999999543       667778888


Q ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCcccc--CCCccccCCC
Q 029437           86 AKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTT--GKGKVNLADS  163 (193)
Q Consensus        86 ~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  163 (193)
                      +..|.++++.++.|+. +.....+++++....  -+.++++++|.+|.......++.......+.++.  +..-..+-+.
T Consensus       116 ~~~DLvL~l~~~~dra-L~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~  192 (296)
T COG3596         116 PKLDLVLWLIKADDRA-LGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL  192 (296)
T ss_pred             hhccEEEEeccCCCcc-ccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999885 445556677765432  2589999999999873321111111111100000  0000000001


Q ss_pred             CCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          164 NVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ...-.+++..|+..+.|++++...+...+
T Consensus       193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~l  221 (296)
T COG3596         193 FQEVKPVVAVSGRLPWGLKELVRALITAL  221 (296)
T ss_pred             HhhcCCeEEeccccCccHHHHHHHHHHhC
Confidence            11234677788899999999999988764

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.69  E-value=6.4e-16  Score=113.87  Aligned_cols=151  Identities=20%  Similarity=0.251  Sum_probs=105.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc--c-cCCCCCcceeEEEeCCEEEEEEEcCChhhhH-------hhHHhhcccCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLV--Q-HQPTQYPTSEELSIGKIKFKAFDLGGHQIAR-------RVWKDYYAKVD   89 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~--~-~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~d   89 (193)
                      ..+++++|+|++|||||++++++.+..  . ...|..+..+.+.+++..+++.|+||.-...       ...-...+.||
T Consensus        63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~AD  142 (365)
T COG1163          63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNAD  142 (365)
T ss_pred             CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCC
Confidence            458999999999999999999987632  2 2347777888999999999999999853321       22334568999


Q ss_pred             EEEEEEECCChhh-HHHHHHHHHHH----------------------------------------HcCCC----------
Q 029437           90 AVVYLVDAYDKER-FAESKKELDAL----------------------------------------LSDEA----------  118 (193)
Q Consensus        90 ~vl~v~d~~~~~~-~~~~~~~~~~~----------------------------------------~~~~~----------  118 (193)
                      ++++|+|+....+ .+.+.+.+...                                        +.++.          
T Consensus       143 lIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~  222 (365)
T COG1163         143 LIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIRE  222 (365)
T ss_pred             EEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEec
Confidence            9999999985543 33333322221                                        11100          


Q ss_pred             --------------CCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhH
Q 029437          119 --------------LANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDG  184 (193)
Q Consensus       119 --------------~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el  184 (193)
                                    ..-+|.+.+.||.|+....+.+.+.+.                      .+++++||.++.|++++
T Consensus       223 dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~----------------------~~~v~isa~~~~nld~L  280 (365)
T COG1163         223 DVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARK----------------------PNSVPISAKKGINLDEL  280 (365)
T ss_pred             CCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhc----------------------cceEEEecccCCCHHHH
Confidence                          112899999999999753222222221                      25789999999999999


Q ss_pred             HHhhhhhc
Q 029437          185 FKWLSQYI  192 (193)
Q Consensus       185 ~~~i~~~~  192 (193)
                      .+.|.+.+
T Consensus       281 ~e~i~~~L  288 (365)
T COG1163         281 KERIWDVL  288 (365)
T ss_pred             HHHHHHhh
Confidence            99998765

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.69  E-value=6.5e-17  Score=116.77  Aligned_cols=162  Identities=17%  Similarity=0.267  Sum_probs=95.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccc----cCCCCCcceeEEE-eCCEEEEEEEcCChhhhHh-----hHHhhcccCCEE
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQ----HQPTQYPTSEELS-IGKIKFKAFDLGGHQIARR-----VWKDYYAKVDAV   91 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~-~~~~~~~~~D~~G~~~~~~-----~~~~~~~~~d~v   91 (193)
                      ||+++|++||||||+.+.+..+-.+.    ..+|.......+. .+...+++||+||+..+..     .....++.++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L   80 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL   80 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence            79999999999999999998765432    3467777777776 4568999999999875533     346678999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcC--CCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSD--EALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      |||+|+.+.+ +.+....+...+..  ...+++.+-++++|+|+.......+..............      +.....+.
T Consensus        81 IyV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~------~~~~~~~~  153 (232)
T PF04670_consen   81 IYVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELE------DLGIEDIT  153 (232)
T ss_dssp             EEEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHH------HTT-TSEE
T ss_pred             EEEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhh------hccccceE
Confidence            9999998443 22333333332221  234799999999999997543333332222211100000      00001467


Q ss_pred             EEEeeeecCCChhhHHHhhhhh
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                      ++.||--. +.+-+.|..|.+.
T Consensus       154 ~~~TSI~D-~Sly~A~S~Ivq~  174 (232)
T PF04670_consen  154 FFLTSIWD-ESLYEAWSKIVQK  174 (232)
T ss_dssp             EEEE-TTS-THHHHHHHHHHHT
T ss_pred             EEeccCcC-cHHHHHHHHHHHH
Confidence            88887766 5676767666654

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=1e-15  Score=119.53  Aligned_cols=159  Identities=21%  Similarity=0.162  Sum_probs=115.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccC---CCCCcceeEEEe-CCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ---PTQYPTSEELSI-GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~---~t~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      ....-+-|+|+..-|||||+.++-........   .|..+....+.. ++.++++.|||||..|..|+.....-+|++++
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL  230 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVL  230 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence            35667999999999999999999776654322   244443333332 56799999999999999999998889999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      |+.+.|.-.-+.     .+.+.+....++|+|+.+||+|.+.+ +++....++-...+.-        ..+...+.++++
T Consensus       231 VVAadDGVmpQT-----~EaIkhAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~--------E~~GGdVQvipi  296 (683)
T KOG1145|consen  231 VVAADDGVMPQT-----LEAIKHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVV--------EDLGGDVQVIPI  296 (683)
T ss_pred             EEEccCCccHhH-----HHHHHHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccH--------HHcCCceeEEEe
Confidence            999988532211     11223344469999999999998644 5666665554333211        223356789999


Q ss_pred             eeecCCChhhHHHhhhh
Q 029437          174 SIVRKMGYGDGFKWLSQ  190 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~  190 (193)
                      ||++|.|++.|-+.|.-
T Consensus       297 SAl~g~nl~~L~eaill  313 (683)
T KOG1145|consen  297 SALTGENLDLLEEAILL  313 (683)
T ss_pred             ecccCCChHHHHHHHHH
Confidence            99999999999988763

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.68  E-value=1.3e-15  Score=108.64  Aligned_cols=163  Identities=12%  Similarity=0.022  Sum_probs=98.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcccc-----CCCCCcceeEEEeCCEEEEEEEcCChhhh-------HhhH----Hhh
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQH-----QPTQYPTSEELSIGKIKFKAFDLGGHQIA-------RRVW----KDY   84 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~----~~~   84 (193)
                      .+|+++|.+|+|||||+|++++.+....     ..|.........+.+..+.++||||....       ....    ...
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~   80 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS   80 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence            4799999999999999999998864321     23556666677778899999999995332       1111    122


Q ss_pred             cccCCEEEEEEECCCh-hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCC
Q 029437           85 YAKVDAVVYLVDAYDK-ERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADS  163 (193)
Q Consensus        85 ~~~~d~vl~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (193)
                      ...+|++++|+++.+. .....+.+.+...+..  ..-.++++++|+.|.......++......... +.      +.+.
T Consensus        81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~--~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l-~~------l~~~  151 (196)
T cd01852          81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGE--KVLDHTIVLFTRGDDLEGGTLEDYLENSCEAL-KR------LLEK  151 (196)
T ss_pred             CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhCh--HhHhcEEEEEECccccCCCcHHHHHHhccHHH-HH------HHHH
Confidence            3578999999998762 1223333444444321  11358899999999875544444322221111 00      0000


Q ss_pred             CCcceEEE-Ee--eeecCCChhhHHHhhhhhc
Q 029437          164 NVRPLEVF-MC--SIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       164 ~~~~~~~~-~~--Sa~~g~gv~el~~~i~~~~  192 (193)
                      +...+..| ..  |+..+.++++|++.|.+.+
T Consensus       152 c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~  183 (196)
T cd01852         152 CGGRYVAFNNKAKGEEQEQQVKELLAKVESMV  183 (196)
T ss_pred             hCCeEEEEeCCCCcchhHHHHHHHHHHHHHHH
Confidence            00111111 11  3667889999999988754

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK12739 elongation factor G; Reviewed

Probab=99.67  E-value=3.2e-15  Score=124.45  Aligned_cols=113  Identities=20%  Similarity=0.088  Sum_probs=84.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC-----c----------------cccCCCCCcceeEEEeCCEEEEEEEcCChhhh
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER-----L----------------VQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA   77 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~-----~----------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~   77 (193)
                      +-.+|+|+|++++|||||+++|....     .                .....|.......+.+++..++++||||+..+
T Consensus         7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f   86 (691)
T PRK12739          7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF   86 (691)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence            44589999999999999999996421     0                01223555566778889999999999999888


Q ss_pred             HhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437           78 RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA  136 (193)
Q Consensus        78 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  136 (193)
                      .......+..+|++++|+|+.+.... +....+.....    .++|+++++||+|+...
T Consensus        87 ~~e~~~al~~~D~~ilVvDa~~g~~~-qt~~i~~~~~~----~~~p~iv~iNK~D~~~~  140 (691)
T PRK12739         87 TIEVERSLRVLDGAVAVFDAVSGVEP-QSETVWRQADK----YGVPRIVFVNKMDRIGA  140 (691)
T ss_pred             HHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence            77777888999999999999876332 22233333322    47899999999999854

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.67  E-value=3.7e-16  Score=120.17  Aligned_cols=149  Identities=19%  Similarity=0.183  Sum_probs=111.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc------------------ccCCCCCcceeEEEe-----CCEEEEEEEcCChhhhH
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLV------------------QHQPTQYPTSEELSI-----GKIKFKAFDLGGHQIAR   78 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~------------------~~~~t~~~~~~~~~~-----~~~~~~~~D~~G~~~~~   78 (193)
                      +.-++-+-.-|||||..++....-.                  +...|+..+...+.+     ..+.++++|||||..|.
T Consensus        11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs   90 (603)
T COG0481          11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS   90 (603)
T ss_pred             ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence            4667788899999999998533210                  122344444444444     34889999999999887


Q ss_pred             hhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---HHHHHHhhCCCccccCC
Q 029437           79 RVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---EEELRYHLGLSNFTTGK  155 (193)
Q Consensus        79 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~  155 (193)
                      -.....+..|.+.++|+|++..-.-+.+.+.+..+-     .+.-++.|+||+|++.+..   ..++.+.+++..     
T Consensus        91 YEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~-----  160 (603)
T COG0481          91 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDA-----  160 (603)
T ss_pred             EEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCc-----
Confidence            766677788999999999998766667777777663     3788999999999974432   234566666555     


Q ss_pred             CccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          156 GKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                                  .+.+.||||+|.|++++++.|.+++
T Consensus       161 ------------~dav~~SAKtG~gI~~iLe~Iv~~i  185 (603)
T COG0481         161 ------------SDAVLVSAKTGIGIEDVLEAIVEKI  185 (603)
T ss_pred             ------------chheeEecccCCCHHHHHHHHHhhC
Confidence                        5688999999999999999999876

>cd00066 G-alpha G protein alpha subunit

Probab=99.66  E-value=2.2e-15  Score=114.57  Aligned_cols=136  Identities=20%  Similarity=0.303  Sum_probs=98.5

Q ss_pred             CCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCCh----------hhHHHHHHHHHHHHcCCCC
Q 029437           50 PTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDK----------ERFAESKKELDALLSDEAL  119 (193)
Q Consensus        50 ~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~----------~~~~~~~~~~~~~~~~~~~  119 (193)
                      ||.+.....+.+++..+.+||++|+...+..|.+++.+++++++|+|+++-          ..+.+....+..+++....
T Consensus       147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~  226 (317)
T cd00066         147 KTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF  226 (317)
T ss_pred             ccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence            344566666777889999999999999999999999999999999999873          5677888888888887777


Q ss_pred             CCCcEEEEEeCCCCCCC------------------CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCCh
Q 029437          120 ANVPFLVLGNKIDIPYA------------------ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGY  181 (193)
Q Consensus       120 ~~~pviiv~nK~D~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv  181 (193)
                      .++|+++++||.|+...                  .+.++..+.+...+..       +.+...+.+-...++|..-.++
T Consensus       227 ~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~-------~~~~~~~~~~~~~t~a~Dt~~i  299 (317)
T cd00066         227 ANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLD-------LNRNPNKEIYPHFTCATDTENI  299 (317)
T ss_pred             cCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHH-------hhcCCCCeEEEEeccccchHHH
Confidence            89999999999996511                  1111111111111110       1111124566778999999999


Q ss_pred             hhHHHhhhhhc
Q 029437          182 GDGFKWLSQYI  192 (193)
Q Consensus       182 ~el~~~i~~~~  192 (193)
                      +.+|+.+.+.+
T Consensus       300 ~~vf~~v~~~i  310 (317)
T cd00066         300 RFVFDAVKDII  310 (317)
T ss_pred             HHHHHHHHHHH
Confidence            99998877643

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.66  E-value=6.4e-16  Score=98.45  Aligned_cols=138  Identities=20%  Similarity=0.241  Sum_probs=96.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhh----HHhhcccCCEEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRV----WKDYYAKVDAVVYLVD   96 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~----~~~~~~~~d~vl~v~d   96 (193)
                      .||+++|..|+|||||.+++.+..      +.+.....+++...  -.+||||..-....    +......+|.+++|-+
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~------~lykKTQAve~~d~--~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~   73 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGND------TLYKKTQAVEFNDK--GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHA   73 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcch------hhhcccceeeccCc--cccCCchhhhhhhHHHHHHHHHhhccceeeeeec
Confidence            389999999999999999998865      44445555666331  26799996533322    3334568999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeee
Q 029437           97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIV  176 (193)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  176 (193)
                      ++++++.-.  ..+      ......|+|-+++|.|++...+.+.....+...                ...++|++|+.
T Consensus        74 and~~s~f~--p~f------~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~ea----------------Ga~~IF~~s~~  129 (148)
T COG4917          74 ANDPESRFP--PGF------LDIGVKKVIGVVTKADLAEDADISLVKRWLREA----------------GAEPIFETSAV  129 (148)
T ss_pred             ccCccccCC--ccc------ccccccceEEEEecccccchHhHHHHHHHHHHc----------------CCcceEEEecc
Confidence            999865211  111      112356799999999998544444444443322                23579999999


Q ss_pred             cCCChhhHHHhhhh
Q 029437          177 RKMGYGDGFKWLSQ  190 (193)
Q Consensus       177 ~g~gv~el~~~i~~  190 (193)
                      ...|++++++.|..
T Consensus       130 d~~gv~~l~~~L~~  143 (148)
T COG4917         130 DNQGVEELVDYLAS  143 (148)
T ss_pred             CcccHHHHHHHHHh
Confidence            99999999998864

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.66  E-value=1e-15  Score=113.61  Aligned_cols=154  Identities=22%  Similarity=0.299  Sum_probs=103.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEe-CCEEEEEEEcCChhhh-------HhhHHhhcccCCE
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSI-GKIKFKAFDLGGHQIA-------RRVWKDYYAKVDA   90 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~-------~~~~~~~~~~~d~   90 (193)
                      -|+++|.|++|||||+++++..+..-   ..+|..++...+.. ....+.+-|.||.-.-       ..-+...+.++..
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v  240 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV  240 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence            47899999999999999998876332   22467777777775 4567999999995432       1223344578899


Q ss_pred             EEEEEECCChh------hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCC
Q 029437           91 VVYLVDAYDKE------RFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADS  163 (193)
Q Consensus        91 vl~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (193)
                      +++|+|++..+      .++.+...+...  .....++|.++++||+|+..+ ...++..+.+....             
T Consensus       241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y--~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~-------------  305 (369)
T COG0536         241 LLHVIDLSPIDGRDPIEDYQTIRNELEKY--SPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEAL-------------  305 (369)
T ss_pred             eEEEEecCcccCCCHHHHHHHHHHHHHHh--hHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhc-------------
Confidence            99999997543      233333333333  234468999999999997633 33344444444332             


Q ss_pred             CCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          164 NVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                        ......++||.++.|++++...+.+.+
T Consensus       306 --~~~~~~~ISa~t~~g~~~L~~~~~~~l  332 (369)
T COG0536         306 --GWEVFYLISALTREGLDELLRALAELL  332 (369)
T ss_pred             --CCCcceeeehhcccCHHHHHHHHHHHH
Confidence              111222299999999999988876643

>PRK00007 elongation factor G; Reviewed

Probab=99.66  E-value=7.4e-15  Score=122.28  Aligned_cols=114  Identities=18%  Similarity=0.058  Sum_probs=83.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC--c-------------------cccCCCCCcceeEEEeCCEEEEEEEcCChhhh
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER--L-------------------VQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA   77 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~--~-------------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~   77 (193)
                      +-.+|+|+|++++|||||+++|....  .                   .....|.......+.+.+..++++||||+..+
T Consensus         9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f   88 (693)
T PRK00007          9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF   88 (693)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence            34599999999999999999996311  0                   01223455556678888999999999999887


Q ss_pred             HhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC
Q 029437           78 RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA  137 (193)
Q Consensus        78 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~  137 (193)
                      .......+..+|++++|+|+...-.. +....+.....    .++|+++++||+|+..+.
T Consensus        89 ~~ev~~al~~~D~~vlVvda~~g~~~-qt~~~~~~~~~----~~~p~iv~vNK~D~~~~~  143 (693)
T PRK00007         89 TIEVERSLRVLDGAVAVFDAVGGVEP-QSETVWRQADK----YKVPRIAFVNKMDRTGAD  143 (693)
T ss_pred             HHHHHHHHHHcCEEEEEEECCCCcch-hhHHHHHHHHH----cCCCEEEEEECCCCCCCC
Confidence            66667777899999999999765332 22333443332    378999999999997543

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=1e-15  Score=116.17  Aligned_cols=153  Identities=21%  Similarity=0.208  Sum_probs=101.1

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCC--c----------------------c----------ccCCCCCcceeEEEe
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDER--L----------------------V----------QHQPTQYPTSEELSI   61 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~--~----------------------~----------~~~~t~~~~~~~~~~   61 (193)
                      ..+.+++++++|+.++|||||+-+|+...  +                      .          ....|.......++.
T Consensus         3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet   82 (428)
T COG5256           3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET   82 (428)
T ss_pred             CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence            35778999999999999999999984221  0                      0          112233444555666


Q ss_pred             CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh---hH-----HHHHHHHHHHHcCCCCCCCcEEEEEeCCCC
Q 029437           62 GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE---RF-----AESKKELDALLSDEALANVPFLVLGNKIDI  133 (193)
Q Consensus        62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~---~~-----~~~~~~~~~~~~~~~~~~~pviiv~nK~D~  133 (193)
                      +...++++|+||+..|-..+-.....+|+.++|+|+.+.+   ++     ..-+..+...+     .-..+|+++||+|.
T Consensus        83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-----Gi~~lIVavNKMD~  157 (428)
T COG5256          83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-----GIKQLIVAVNKMDL  157 (428)
T ss_pred             CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-----CCceEEEEEEcccc
Confidence            7788999999999999887778889999999999998763   11     11112222221     24567999999999


Q ss_pred             CC--CCCHHHHHHhhCCCcccc-CCCccccCCCCCcceEEEEeeeecCCChh
Q 029437          134 PY--AASEEELRYHLGLSNFTT-GKGKVNLADSNVRPLEVFMCSIVRKMGYG  182 (193)
Q Consensus       134 ~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  182 (193)
                      ..  ....+++...... +... +..        ...++++++|+.+|.|+-
T Consensus       158 v~wde~rf~ei~~~v~~-l~k~~G~~--------~~~v~FIPiSg~~G~Nl~  200 (428)
T COG5256         158 VSWDEERFEEIVSEVSK-LLKMVGYN--------PKDVPFIPISGFKGDNLT  200 (428)
T ss_pred             cccCHHHHHHHHHHHHH-HHHHcCCC--------ccCCeEEecccccCCccc
Confidence            84  1222334443332 1100 110        024789999999999984

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.65  E-value=4.3e-15  Score=123.74  Aligned_cols=113  Identities=19%  Similarity=0.039  Sum_probs=84.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc---------------------ccCCCCCcceeEEEeCCEEEEEEEcCChhhhH
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLV---------------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR   78 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~   78 (193)
                      --+|+|+|++++|||||+++|....-.                     ....|.......+.+++..+.+|||||+..+.
T Consensus        10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~   89 (689)
T TIGR00484        10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT   89 (689)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh
Confidence            348999999999999999999632110                     01234455667788899999999999998887


Q ss_pred             hhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC
Q 029437           79 RVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA  137 (193)
Q Consensus        79 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~  137 (193)
                      ......++.+|++++|+|+.+....+ ....+.....    .++|+++++||+|+..+.
T Consensus        90 ~~~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~~~~~----~~~p~ivviNK~D~~~~~  143 (689)
T TIGR00484        90 VEVERSLRVLDGAVAVLDAVGGVQPQ-SETVWRQANR----YEVPRIAFVNKMDKTGAN  143 (689)
T ss_pred             HHHHHHHHHhCEEEEEEeCCCCCChh-HHHHHHHHHH----cCCCEEEEEECCCCCCCC
Confidence            77778889999999999998754432 2233333322    378999999999997543

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK09866 hypothetical protein; Provisional

Probab=99.62  E-value=2.9e-14  Score=114.44  Aligned_cols=114  Identities=18%  Similarity=0.215  Sum_probs=71.4

Q ss_pred             EEEEEEEcCChhh-----hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC
Q 029437           64 IKFKAFDLGGHQI-----ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS  138 (193)
Q Consensus        64 ~~~~~~D~~G~~~-----~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~  138 (193)
                      ..+.++||||...     ....+...+..+|+|++|+|+....+..  ...+...+.... .+.|+++|+||+|+.+...
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~--DeeIlk~Lkk~~-K~~PVILVVNKIDl~dree  306 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSIS--DEEVREAILAVG-QSVPLYVLVNKFDQQDRNS  306 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChh--HHHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence            3478999999643     2334455788999999999997743221  122223322211 1369999999999863222


Q ss_pred             --HHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhh
Q 029437          139 --EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQ  190 (193)
Q Consensus       139 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~  190 (193)
                        .+.+.........          ........++++||+.|.|++++++.|.+
T Consensus       307 ddkE~Lle~V~~~L~----------q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        307 DDADQVRALISGTLM----------KGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             chHHHHHHHHHHHHH----------hcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence              3333333211100          00113467999999999999999999876

>PRK12740 elongation factor G; Reviewed

Probab=99.62  E-value=2.1e-14  Score=119.62  Aligned_cols=106  Identities=20%  Similarity=0.103  Sum_probs=78.7

Q ss_pred             EcCCCCCHHHHHHHHhcCCcc---------------------ccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhh
Q 029437           26 LGLDNAGKTTLLHMLKDERLV---------------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDY   84 (193)
Q Consensus        26 ~G~~~~GKssl~~~l~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~   84 (193)
                      +|++|+|||||+++|....-.                     ....|++.....+.+.+..+.+|||||+..+.......
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            599999999999999432210                     12234455566788889999999999998887777778


Q ss_pred             cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437           85 YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA  136 (193)
Q Consensus        85 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  136 (193)
                      +..+|++++|+|+++....+ ....+.....    .++|+++++||+|+...
T Consensus        81 l~~aD~vllvvd~~~~~~~~-~~~~~~~~~~----~~~p~iiv~NK~D~~~~  127 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQ-TETVWRQAEK----YGVPRIIFVNKMDRAGA  127 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHH-HHHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence            88999999999998765433 2233333322    37899999999998754

>PRK13768 GTPase; Provisional

Probab=99.59  E-value=2.1e-14  Score=105.95  Aligned_cols=128  Identities=17%  Similarity=0.130  Sum_probs=72.8

Q ss_pred             EEEEEEEcCChhhhH---hhHHhh---ccc--CCEEEEEEECCChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437           64 IKFKAFDLGGHQIAR---RVWKDY---YAK--VDAVVYLVDAYDKERFAESK-KELDALLSDEALANVPFLVLGNKIDIP  134 (193)
Q Consensus        64 ~~~~~~D~~G~~~~~---~~~~~~---~~~--~d~vl~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~~  134 (193)
                      ..+.+||+||+.+..   .....+   +..  .+++++|+|+....+..... .++....... ..++|+++++||+|+.
T Consensus        97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~  175 (253)
T PRK13768         97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLL  175 (253)
T ss_pred             CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhc
Confidence            368999999976532   222222   222  89999999996543222211 1111111111 1479999999999998


Q ss_pred             CCCCHHHHHHhhCCC-cc----cc-----CCCccccCC---CCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          135 YAASEEELRYHLGLS-NF----TT-----GKGKVNLAD---SNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       135 ~~~~~~~~~~~~~~~-~~----~~-----~~~~~~~~~---~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .....++..+.+... ..    ..     +.-...+.+   ......+++++|++++.|+++++++|.+.+
T Consensus       176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence            665554444433310 00    00     000000000   001224789999999999999999998765

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.58  E-value=7.7e-14  Score=108.71  Aligned_cols=78  Identities=23%  Similarity=0.234  Sum_probs=54.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cC--CCCCcceeEEE------------------------eCCEEEEEEEcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQ--PTQYPTSEELS------------------------IGKIKFKAFDLGG   73 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~--~t~~~~~~~~~------------------------~~~~~~~~~D~~G   73 (193)
                      ++|+++|.||+|||||++++++..+.. ..  .|..++.+...                        .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            589999999999999999999876542 11  23344443322                        1236789999999


Q ss_pred             hh----hhHh---hHHhhcccCCEEEEEEECC
Q 029437           74 HQ----IARR---VWKDYYAKVDAVVYLVDAY   98 (193)
Q Consensus        74 ~~----~~~~---~~~~~~~~~d~vl~v~d~~   98 (193)
                      ..    ....   .+...++.+|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            42    2222   2233478999999999996

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.58  E-value=7.9e-14  Score=105.35  Aligned_cols=137  Identities=23%  Similarity=0.325  Sum_probs=98.3

Q ss_pred             CCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCC----------hhhHHHHHHHHHHHHcCCC
Q 029437           49 QPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYD----------KERFAESKKELDALLSDEA  118 (193)
Q Consensus        49 ~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~----------~~~~~~~~~~~~~~~~~~~  118 (193)
                      .+|.|.....+.+++..+.++|++||...+.=|.+++.++++|++|+++++          ...+.+....+..+.+...
T Consensus       180 ~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~  259 (354)
T KOG0082|consen  180 VPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW  259 (354)
T ss_pred             cCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence            346677888889999999999999999999989999999999999999974          2446677778888888888


Q ss_pred             CCCCcEEEEEeCCCCCC----CCCH-------------HHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCCh
Q 029437          119 LANVPFLVLGNKIDIPY----AASE-------------EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGY  181 (193)
Q Consensus       119 ~~~~pviiv~nK~D~~~----~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv  181 (193)
                      ..+.++|+++||.|+..    ..+.             ++....+...+       ..+.......+=...+.|+.-.+|
T Consensus       260 F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF-------~~l~~~~~k~iy~h~T~AtDT~nv  332 (354)
T KOG0082|consen  260 FANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKF-------EELNKNKDKKIYVHFTCATDTQNV  332 (354)
T ss_pred             cccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHH-------HHHhcccCCcceEEEEeeccHHHH
Confidence            89999999999999861    1111             11111111111       111111112344556789988999


Q ss_pred             hhHHHhhhhhc
Q 029437          182 GDGFKWLSQYI  192 (193)
Q Consensus       182 ~el~~~i~~~~  192 (193)
                      +.+|....+.+
T Consensus       333 ~~vf~av~d~I  343 (354)
T KOG0082|consen  333 QFVFDAVTDTI  343 (354)
T ss_pred             HHHHHHHHHHH
Confidence            99988876543

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.58  E-value=5.4e-15  Score=114.46  Aligned_cols=174  Identities=18%  Similarity=0.154  Sum_probs=115.3

Q ss_pred             HHHHHHHHHhhCCC----CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccC--CCCCcceeEEEeCCEEEEEEEcCChhh
Q 029437            4 LDWFYGVLASLGLW----QKEAKILFLGLDNAGKTTLLHMLKDERLV-QHQ--PTQYPTSEELSIGKIKFKAFDLGGHQI   76 (193)
Q Consensus         4 ~~~~~~~~~~~~~~----~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~--~t~~~~~~~~~~~~~~~~~~D~~G~~~   76 (193)
                      ++||+...+-+.+.    ...-+++|+|-|++|||||++.++..+.. ++.  +|.....+.+.+....++++||||.-.
T Consensus       148 l~yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD  227 (620)
T KOG1490|consen  148 LEYLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILD  227 (620)
T ss_pred             HHHHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccC
Confidence            56777766655543    36678999999999999999998876633 222  366778888899999999999999321


Q ss_pred             h----Hh-----hHHhhcccCCEEEEEEECCChhh--HHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHh
Q 029437           77 A----RR-----VWKDYYAKVDAVVYLVDAYDKER--FAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYH  145 (193)
Q Consensus        77 ~----~~-----~~~~~~~~~d~vl~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~  145 (193)
                      .    +.     ......+--.+|||++|.+..+.  ..+-...+..+  ..-..+.|+|+|+||+|..+..+.++-..+
T Consensus       228 ~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsI--KpLFaNK~~IlvlNK~D~m~~edL~~~~~~  305 (620)
T KOG1490|consen  228 RPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSI--KPLFANKVTILVLNKIDAMRPEDLDQKNQE  305 (620)
T ss_pred             cchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHh--HHHhcCCceEEEeecccccCccccCHHHHH
Confidence            1    11     11112233458999999987654  33333444444  222358999999999999865554442222


Q ss_pred             hCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          146 LGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                      +-...            .....++++.+|..+.+|+-++.+..+.+
T Consensus       306 ll~~~------------~~~~~v~v~~tS~~~eegVm~Vrt~ACe~  339 (620)
T KOG1490|consen  306 LLQTI------------IDDGNVKVVQTSCVQEEGVMDVRTTACEA  339 (620)
T ss_pred             HHHHH------------HhccCceEEEecccchhceeeHHHHHHHH
Confidence            21111            00123789999999999998877665543

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.57  E-value=5e-14  Score=117.74  Aligned_cols=125  Identities=19%  Similarity=0.099  Sum_probs=87.7

Q ss_pred             hHHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcC---------------Cccc----cCCCCCccee----EE
Q 029437            3 LLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE---------------RLVQ----HQPTQYPTSE----EL   59 (193)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~---------------~~~~----~~~t~~~~~~----~~   59 (193)
                      |++++..++...   ....+|+++|+.++|||||++++...               ++..    ...|......    .+
T Consensus         5 ~~~~~~~~~~~~---~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~   81 (720)
T TIGR00490         5 MIDKIKELMWKP---KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEY   81 (720)
T ss_pred             HHHHHHHHhhCc---ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEee
Confidence            677777777543   34469999999999999999999642               1111    1223333222    24


Q ss_pred             EeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437           60 SIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY  135 (193)
Q Consensus        60 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~  135 (193)
                      .+.+..+.+|||||+..+.......+..+|++++|+|+.+.-.. +....+.....    .+.|+++++||+|...
T Consensus        82 ~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~-~t~~~~~~~~~----~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        82 EGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMP-QTETVLRQALK----ENVKPVLFINKVDRLI  152 (720)
T ss_pred             cCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCc-cHHHHHHHHHH----cCCCEEEEEEChhccc
Confidence            56778999999999998887777888999999999999774221 12233333322    3678899999999873

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.57  E-value=5.5e-14  Score=106.69  Aligned_cols=108  Identities=17%  Similarity=0.093  Sum_probs=68.6

Q ss_pred             CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH-
Q 029437           63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE-  141 (193)
Q Consensus        63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~-  141 (193)
                      +.++.++||+|.......   ....+|.+++|.+....+.++.......++         .-++|+||.|+........ 
T Consensus       148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~---------aDIiVVNKaDl~~~~~a~~~  215 (332)
T PRK09435        148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKGIMEL---------ADLIVINKADGDNKTAARRA  215 (332)
T ss_pred             CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhhhhhh---------hheEEeehhcccchhHHHHH
Confidence            467899999997633322   345699999998755555554443222222         2289999999975443333 


Q ss_pred             ---HHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          142 ---LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       142 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                         +...+.....          ....+..+++.+||++|.|+++++++|.+++
T Consensus       216 ~~el~~~L~l~~~----------~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~  259 (332)
T PRK09435        216 AAEYRSALRLLRP----------KDPGWQPPVLTCSALEGEGIDEIWQAIEDHR  259 (332)
T ss_pred             HHHHHHHHhcccc----------cccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence               3333322110          0001235789999999999999999998764

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.57  E-value=7.7e-14  Score=118.75  Aligned_cols=152  Identities=20%  Similarity=0.231  Sum_probs=94.7

Q ss_pred             CCHHHHHHHHhcCCccccC---CCCCcceeEEEeCC------------------EEEEEEEcCChhhhHhhHHhhcccCC
Q 029437           31 AGKTTLLHMLKDERLVQHQ---PTQYPTSEELSIGK------------------IKFKAFDLGGHQIARRVWKDYYAKVD   89 (193)
Q Consensus        31 ~GKssl~~~l~~~~~~~~~---~t~~~~~~~~~~~~------------------~~~~~~D~~G~~~~~~~~~~~~~~~d   89 (193)
                      ++||||+.++.+...+...   .|.......+..+.                  -.+.+|||||+..+..+.......+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            5699999999887765432   24443333333221                  13899999999999888887888899


Q ss_pred             EEEEEEECCC---hhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC--H------------HHHHHhhCC----
Q 029437           90 AVVYLVDAYD---KERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS--E------------EELRYHLGL----  148 (193)
Q Consensus        90 ~vl~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~--~------------~~~~~~~~~----  148 (193)
                      ++++|+|+++   ++++..+.     .+..   .++|+++++||+|+.+...  .            ++..+++..    
T Consensus       552 ivlLVVDa~~Gi~~qT~e~I~-----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~  623 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTIEAIN-----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE  623 (1049)
T ss_pred             EEEEEEECcccCCHhHHHHHH-----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence            9999999987   33333222     2222   3689999999999964221  0            111111110    


Q ss_pred             ---CccccCCCcc--ccCCCCCcceEEEEeeeecCCChhhHHHhhhh
Q 029437          149 ---SNFTTGKGKV--NLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQ  190 (193)
Q Consensus       149 ---~~~~~~~~~~--~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~  190 (193)
                         +....+...+  .........++++++||++|+|+++|+++|..
T Consensus       624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~  670 (1049)
T PRK14845        624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG  670 (1049)
T ss_pred             HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence               0000110000  00112335689999999999999999998853

>cd01850 CDC_Septin CDC/Septin

Probab=99.56  E-value=4.4e-14  Score=105.46  Aligned_cols=110  Identities=19%  Similarity=0.263  Sum_probs=69.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccccC-----------CCCCcce--eEEEeCC--EEEEEEEcCChhh--------
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQ-----------PTQYPTS--EELSIGK--IKFKAFDLGGHQI--------   76 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-----------~t~~~~~--~~~~~~~--~~~~~~D~~G~~~--------   76 (193)
                      .++|+++|.+|+|||||+|++++..+....           +|.....  ..+...+  ..+++|||||...        
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~   83 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW   83 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence            589999999999999999999988765421           2222222  2233334  5799999999321        


Q ss_pred             ----------hHhhHH--------hhcc--cCCEEEEEEECCChhhHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437           77 ----------ARRVWK--------DYYA--KVDAVVYLVDAYDKERFAES-KKELDALLSDEALANVPFLVLGNKIDIPY  135 (193)
Q Consensus        77 ----------~~~~~~--------~~~~--~~d~vl~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~D~~~  135 (193)
                                +...+.        ..+.  ++|+++|+++.+... +... .+.+..+ .    .++|+++|+||+|+..
T Consensus        84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l-~----~~v~vi~VinK~D~l~  157 (276)
T cd01850          84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRL-S----KRVNIIPVIAKADTLT  157 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHH-h----ccCCEEEEEECCCcCC
Confidence                      111110        1112  578999999886521 2222 3333443 2    2689999999999964

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.53  E-value=6.6e-15  Score=107.41  Aligned_cols=123  Identities=18%  Similarity=0.103  Sum_probs=58.8

Q ss_pred             EEEEEEcCChhhhHhhHHhh------c--ccCCEEEEEEECC---ChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCC
Q 029437           65 KFKAFDLGGHQIARRVWKDY------Y--AKVDAVVYLVDAY---DKERFAESK-KELDALLSDEALANVPFLVLGNKID  132 (193)
Q Consensus        65 ~~~~~D~~G~~~~~~~~~~~------~--~~~d~vl~v~d~~---~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D  132 (193)
                      .+.++|||||.++...+...      +  ...-++++++|+.   ++..+-... --....++    .+.|.|.++||+|
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~----~~lP~vnvlsK~D  167 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR----LELPHVNVLSKID  167 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH----HTSEEEEEE--GG
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh----CCCCEEEeeeccC
Confidence            78999999998765433222      2  2345789999985   343332211 11111222    3899999999999


Q ss_pred             CCCCCCHHHHHHhhC----------CCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          133 IPYAASEEELRYHLG----------LSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       133 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +.... .++..+.+.          .....-......+-........+++.|+.+++|+++++..|.+++
T Consensus       168 l~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  168 LLSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             GS-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             cccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            98522 111111110          000000000011111121233899999999999999999998764

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.52  E-value=1.7e-13  Score=100.39  Aligned_cols=159  Identities=18%  Similarity=0.096  Sum_probs=100.8

Q ss_pred             hCCCCCccEEEEEcCCCCCHHHHHHHHhcCCcc--------ccCCCCCcceeE---------------------------
Q 029437           14 LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLV--------QHQPTQYPTSEE---------------------------   58 (193)
Q Consensus        14 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~--------~~~~t~~~~~~~---------------------------   58 (193)
                      .+..-...+|+|+|.||+|||||+..|...-..        ...|+...+-+.                           
T Consensus        45 ~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~  124 (323)
T COG1703          45 YPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGT  124 (323)
T ss_pred             hhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCcc
Confidence            344445579999999999999999998422110        011221111111                           


Q ss_pred             --------------EEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcE
Q 029437           59 --------------LSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPF  124 (193)
Q Consensus        59 --------------~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pv  124 (193)
                                    ++-.++++.++.|.|.-+....   ...-+|.+++|.-..-.+..+.+..-+.++-+         
T Consensus       125 lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD---------  192 (323)
T COG1703         125 LGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEIAD---------  192 (323)
T ss_pred             chhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhhhh---------
Confidence                          1111467888888875443322   22458999998887777778888877777743         


Q ss_pred             EEEEeCCCCCCCC-CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          125 LVLGNKIDIPYAA-SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       125 iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      |+++||.|...+. ...++...+.....        ......+..+++.|||.+|+|++++++.|.++.
T Consensus       193 i~vINKaD~~~A~~a~r~l~~al~~~~~--------~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~  253 (323)
T COG1703         193 IIVINKADRKGAEKAARELRSALDLLRE--------VWRENGWRPPVVTTSALEGEGIDELWDAIEDHR  253 (323)
T ss_pred             eeeEeccChhhHHHHHHHHHHHHHhhcc--------cccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence            9999999965332 12234444443320        011223557899999999999999999998764

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.51  E-value=4.5e-14  Score=102.01  Aligned_cols=107  Identities=16%  Similarity=0.099  Sum_probs=66.7

Q ss_pred             CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC-CHHH
Q 029437           63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA-SEEE  141 (193)
Q Consensus        63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~-~~~~  141 (193)
                      ++++.++.|.|.-+....   ...-+|.+++|+...-.+..+.+...+.++.+         ++|+||.|+..+. ...+
T Consensus       121 G~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD---------i~vVNKaD~~gA~~~~~~  188 (266)
T PF03308_consen  121 GFDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLGDEIQAIKAGIMEIAD---------IFVVNKADRPGADRTVRD  188 (266)
T ss_dssp             T-SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S---------EEEEE--SHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCccHHHHHhhhhhhhcc---------EEEEeCCChHHHHHHHHH
Confidence            467888888874433322   23558999999998776666666666666633         9999999976322 1223


Q ss_pred             HHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          142 LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                      +...+.+...          ....+..+++.|||.+|.|++++++.|.++
T Consensus       189 l~~~l~l~~~----------~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~  228 (266)
T PF03308_consen  189 LRSMLHLLRE----------REDGWRPPVLKTSALEGEGIDELWEAIDEH  228 (266)
T ss_dssp             HHHHHHHCST----------SCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHhhccc----------cccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            3333332220          011245789999999999999999999875

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>TIGR00101 ureG urease accessory protein UreG

Probab=99.51  E-value=4.2e-13  Score=95.58  Aligned_cols=102  Identities=15%  Similarity=0.256  Sum_probs=62.8

Q ss_pred             EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHH
Q 029437           64 IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEE  141 (193)
Q Consensus        64 ~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~  141 (193)
                      .+..++++.|..-.....+   .-+|.++.|+|+.+.++...  .....+       ...-++++||+|+.+.  ...+.
T Consensus        92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi-------~~ad~~~~~k~d~~~~~~~~~~~  159 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI-------TRSDLLVINKIDLAPMVGADLGV  159 (199)
T ss_pred             CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh-------hhccEEEEEhhhccccccccHHH
Confidence            4566777777321111111   12578999999987655321  111111       1122899999999853  23333


Q ss_pred             HHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          142 LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +.+......               ...+++++||++|.|+++++++|.+++
T Consensus       160 ~~~~~~~~~---------------~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       160 MERDAKKMR---------------GEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             HHHHHHHhC---------------CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            333333222               346789999999999999999998875

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.50  E-value=6.2e-13  Score=111.52  Aligned_cols=124  Identities=18%  Similarity=0.128  Sum_probs=84.5

Q ss_pred             hHHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-------------------cCCCCCcceeEEEe--
Q 029437            3 LLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-------------------HQPTQYPTSEELSI--   61 (193)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-------------------~~~t~~~~~~~~~~--   61 (193)
                      +++++..++....   .--+|+++|+.++|||||+.+++...-..                   ...|.......+.+  
T Consensus         6 ~~~~~~~~~~~~~---~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~   82 (731)
T PRK07560          6 MVEKILELMKNPE---QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEY   82 (731)
T ss_pred             HHHHHHHHhhchh---cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEe
Confidence            4566666665433   33479999999999999999996432110                   01122223333333  


Q ss_pred             --CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437           62 --GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP  134 (193)
Q Consensus        62 --~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  134 (193)
                        .+..++++||||+..+.......+..+|++++|+|+...-. .+....+......    +.|.|+++||+|+.
T Consensus        83 ~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~-~~t~~~~~~~~~~----~~~~iv~iNK~D~~  152 (731)
T PRK07560         83 EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVM-PQTETVLRQALRE----RVKPVLFINKVDRL  152 (731)
T ss_pred             cCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCC-ccHHHHHHHHHHc----CCCeEEEEECchhh
Confidence              46789999999999888777788899999999999976532 2233444443332    56889999999986

>cd01882 BMS1 Bms1

Probab=99.50  E-value=5.4e-13  Score=96.95  Aligned_cols=146  Identities=16%  Similarity=0.114  Sum_probs=86.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      ......|+++|++|+|||||++.+....... .....+. .......+.++.++||||..  ..+ ....+.+|.+++|+
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllvi  111 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLLLI  111 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HHH-HHHHHhcCEEEEEE
Confidence            4566789999999999999999988653221 1111121 11122356789999999864  222 23457899999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcE-EEEEeCCCCCCCC-CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPF-LVLGNKIDIPYAA-SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pv-iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      |++...... ....+..+ ..   .+.|. ++++||.|+.... ..+++.+.+...+.          +......+++.+
T Consensus       112 Da~~~~~~~-~~~i~~~l-~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~----------~~~~~~~ki~~i  176 (225)
T cd01882         112 DASFGFEME-TFEFLNIL-QV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFW----------TEVYQGAKLFYL  176 (225)
T ss_pred             ecCcCCCHH-HHHHHHHH-HH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHH----------HhhCCCCcEEEE
Confidence            997653221 22222222 22   35675 5599999997432 12233333322110          001133689999


Q ss_pred             eeecCCCh
Q 029437          174 SIVRKMGY  181 (193)
Q Consensus       174 Sa~~g~gv  181 (193)
                      ||++...+
T Consensus       177 Sa~~~~~~  184 (225)
T cd01882         177 SGIVHGRY  184 (225)
T ss_pred             eeccCCCC
Confidence            99987544

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.50  E-value=8.4e-13  Score=96.97  Aligned_cols=118  Identities=15%  Similarity=0.131  Sum_probs=75.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccC----CCCCcceeEEEeCCEEEEEEEcCChhhhH-------h---hHH
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ----PTQYPTSEELSIGKIKFKAFDLGGHQIAR-------R---VWK   82 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~---~~~   82 (193)
                      ....++|+|+|.+|+|||||+|++.+.......    .|...........+..+.+|||||.....       .   ...
T Consensus        28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~  107 (249)
T cd01853          28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK  107 (249)
T ss_pred             ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence            457799999999999999999999987654322    23333344445667899999999954331       0   112


Q ss_pred             hhcc--cCCEEEEEEECCChh-hH--HHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437           83 DYYA--KVDAVVYLVDAYDKE-RF--AESKKELDALLSDEALANVPFLVLGNKIDIPYA  136 (193)
Q Consensus        83 ~~~~--~~d~vl~v~d~~~~~-~~--~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  136 (193)
                      .++.  ..|++++|..++... +.  ..+.+.+...+...  --.++++|.||+|..+.
T Consensus       108 ~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~--i~~~~ivV~T~~d~~~p  164 (249)
T cd01853         108 RYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS--IWRNAIVVLTHAASSPP  164 (249)
T ss_pred             HHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh--hHhCEEEEEeCCccCCC
Confidence            2232  578888887665421 11  13333344433211  12469999999999743

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.49  E-value=2.4e-13  Score=100.50  Aligned_cols=162  Identities=15%  Similarity=0.143  Sum_probs=103.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEe----CCEEEEEEEcCChhhhHhhHHhhcccC----C
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSI----GKIKFKAFDLGGHQIARRVWKDYYAKV----D   89 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~D~~G~~~~~~~~~~~~~~~----d   89 (193)
                      ....+|+|+|+.|+|||||+.++.+.+........++-+..+..    +-.++.+|-+.|+.....+++..+...    .
T Consensus        50 psgk~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet  129 (473)
T KOG3905|consen   50 PSGKNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET  129 (473)
T ss_pred             CCCCeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence            36789999999999999999999998833332222222222222    226789999999887777776665432    4


Q ss_pred             EEEEEEECCChhh-HHHHHHHHH---HHHcCCC-----------------------------------------------
Q 029437           90 AVVYLVDAYDKER-FAESKKELD---ALLSDEA-----------------------------------------------  118 (193)
Q Consensus        90 ~vl~v~d~~~~~~-~~~~~~~~~---~~~~~~~-----------------------------------------------  118 (193)
                      .||++.|+++|-. ++.+..|..   +.++...                                               
T Consensus       130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l  209 (473)
T KOG3905|consen  130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL  209 (473)
T ss_pred             EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence            7799999998722 233333311   1111000                                               


Q ss_pred             ----------CCCCcEEEEEeCCCCCCCCC-----HHH----HHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCC
Q 029437          119 ----------LANVPFLVLGNKIDIPYAAS-----EEE----LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKM  179 (193)
Q Consensus       119 ----------~~~~pviiv~nK~D~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  179 (193)
                                .-++|+++|+||+|......     .++    +..+++...         +.    -....+.+|+++..
T Consensus       210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFC---------Lr----~GaaLiyTSvKE~K  276 (473)
T KOG3905|consen  210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFC---------LR----YGAALIYTSVKETK  276 (473)
T ss_pred             cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHH---------HH----cCceeEEeeccccc
Confidence                      01289999999999852221     122    333332222         11    34578999999999


Q ss_pred             ChhhHHHhhhhhc
Q 029437          180 GYGDGFKWLSQYI  192 (193)
Q Consensus       180 gv~el~~~i~~~~  192 (193)
                      |++-+.++|.+++
T Consensus       277 NidllyKYivhr~  289 (473)
T KOG3905|consen  277 NIDLLYKYIVHRS  289 (473)
T ss_pred             chHHHHHHHHHHh
Confidence            9999999999875

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.45  E-value=1.3e-12  Score=110.94  Aligned_cols=123  Identities=15%  Similarity=0.108  Sum_probs=86.4

Q ss_pred             HHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-------------------ccCCCCCcceeEEEe---
Q 029437            4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLV-------------------QHQPTQYPTSEELSI---   61 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-------------------~~~~t~~~~~~~~~~---   61 (193)
                      .+|+..+++.   .++--+|+|+|+.++|||||+++++...-.                   ....|.......+.+   
T Consensus         6 ~~~~~~~~~~---~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~   82 (843)
T PLN00116          6 AEELRRIMDK---KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMT   82 (843)
T ss_pred             HHHHHHHhhC---ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecc
Confidence            3455555543   344459999999999999999999643311                   011122222233333   


Q ss_pred             -------------CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEE
Q 029437           62 -------------GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLG  128 (193)
Q Consensus        62 -------------~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~  128 (193)
                                   .+..++++||||+..|.......++.+|++++|+|+.+.-.. .....|.....    .++|+++++
T Consensus        83 ~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~-~t~~~~~~~~~----~~~p~i~~i  157 (843)
T PLN00116         83 DESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALG----ERIRPVLTV  157 (843)
T ss_pred             cccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcc-cHHHHHHHHHH----CCCCEEEEE
Confidence                         257889999999999988888888999999999999876432 23345555544    488999999


Q ss_pred             eCCCCC
Q 029437          129 NKIDIP  134 (193)
Q Consensus       129 nK~D~~  134 (193)
                      ||+|+.
T Consensus       158 NK~D~~  163 (843)
T PLN00116        158 NKMDRC  163 (843)
T ss_pred             ECCccc
Confidence            999997

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.45  E-value=5.1e-12  Score=94.46  Aligned_cols=125  Identities=12%  Similarity=0.144  Sum_probs=76.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCEEEEEEEcCChhhhHh-------hHHhhc-
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQIARR-------VWKDYY-   85 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------~~~~~~-   85 (193)
                      ...++|+++|.+|+||||++|++++.+.....+    +...........+.++.++||||......       ....++ 
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~  115 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLL  115 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence            467899999999999999999999876432211    12222333445778999999999654321       111111 


Q ss_pred             -ccCCEEEEEEECCC--hh-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHH
Q 029437           86 -AKVDAVVYLVDAYD--KE-RFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRY  144 (193)
Q Consensus        86 -~~~d~vl~v~d~~~--~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~  144 (193)
                       ...|++|||.+.+.  .. .-..+.+.+...+...  .-.++|+++|+.|..+  ..+.++...
T Consensus       116 ~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~~pd~~~~e~fv~  178 (313)
T TIGR00991       116 GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFSPPDGLEYNDFFS  178 (313)
T ss_pred             cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccCCCCCCCHHHHHH
Confidence             26899999966532  11 1123334444443321  2346899999999763  334444433

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.44  E-value=5.7e-12  Score=90.83  Aligned_cols=119  Identities=17%  Similarity=0.079  Sum_probs=74.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccC-----CCCCcceeEEEeCCEEEEEEEcCChhh-------hHhhH----Hhh
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQHQ-----PTQYPTSEELSIGKIKFKAFDLGGHQI-------ARRVW----KDY   84 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~-----~t~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~----~~~   84 (193)
                      ++|+++|..||||||++|.+++.+.....     .|...........+..+.++||||...       .....    ...
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~   80 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC   80 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence            48999999999999999999988754322     255566666688899999999999321       11111    123


Q ss_pred             cccCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH
Q 029437           85 YAKVDAVVYLVDAYDKE-RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE  141 (193)
Q Consensus        85 ~~~~d~vl~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~  141 (193)
                      .++.|++|+|+...... .-....+.+..++....  -..++++.|..|.......++
T Consensus        81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~--~k~~ivvfT~~d~~~~~~~~~  136 (212)
T PF04548_consen   81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI--WKHTIVVFTHADELEDDSLED  136 (212)
T ss_dssp             TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG--GGGEEEEEEEGGGGTTTTHHH
T ss_pred             cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH--HhHhhHHhhhccccccccHHH
Confidence            45789999999997321 22344455555554321  235888999998876555443

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.44  E-value=8.6e-13  Score=101.72  Aligned_cols=160  Identities=19%  Similarity=0.177  Sum_probs=106.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC--ccccCC-------------CCCc----ceeEEEeCCEEEEEEEcCChhhhHhhH
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER--LVQHQP-------------TQYP----TSEELSIGKIKFKAFDLGGHQIARRVW   81 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~-------------t~~~----~~~~~~~~~~~~~~~D~~G~~~~~~~~   81 (193)
                      -+|+|+-+..-|||||..+++...  |.....             ..++    .-..+.|.+++++++|||||-.|....
T Consensus         6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV   85 (603)
T COG1217           6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV   85 (603)
T ss_pred             ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence            379999999999999999996432  322110             1122    223467888999999999999998888


Q ss_pred             HhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccC
Q 029437           82 KDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLA  161 (193)
Q Consensus        82 ~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (193)
                      ...++-+|.+++++|+.+..--+ .+=.+...+.    .+.+.|+|+||+|.+.+...+-+.+.+.+... -....+   
T Consensus        86 ERvl~MVDgvlLlVDA~EGpMPQ-TrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~-L~A~de---  156 (603)
T COG1217          86 ERVLSMVDGVLLLVDASEGPMPQ-TRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVE-LGATDE---  156 (603)
T ss_pred             hhhhhhcceEEEEEEcccCCCCc-hhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHH-hCCChh---
Confidence            88889999999999998753221 2112222222    37788999999999765443333333332221 011111   


Q ss_pred             CCCCcceEEEEeeeecCC----------ChhhHHHhhhhhc
Q 029437          162 DSNVRPLEVFMCSIVRKM----------GYGDGFKWLSQYI  192 (193)
Q Consensus       162 ~~~~~~~~~~~~Sa~~g~----------gv~el~~~i~~~~  192 (193)
                         .-..++++.|+..|.          ++.-||+.|.+++
T Consensus       157 ---QLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv  194 (603)
T COG1217         157 ---QLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHV  194 (603)
T ss_pred             ---hCCCcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence               123678899988774          6788999998875

>PTZ00416 elongation factor 2; Provisional

Probab=99.44  E-value=1.7e-12  Score=109.98  Aligned_cols=122  Identities=16%  Similarity=0.117  Sum_probs=84.9

Q ss_pred             HHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-------------------cCCCCCcceeEEEeC---
Q 029437            5 DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-------------------HQPTQYPTSEELSIG---   62 (193)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-------------------~~~t~~~~~~~~~~~---   62 (193)
                      +|+...+.+   .+.--+|+++|+.++|||||+++|....-..                   ...|.......+.+.   
T Consensus         7 ~~~~~~~~~---~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~   83 (836)
T PTZ00416          7 DQIREIMDN---PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDL   83 (836)
T ss_pred             HHHHHHhhC---ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeeccc
Confidence            455555544   3344599999999999999999997532100                   111222222333443   


Q ss_pred             -------CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437           63 -------KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP  134 (193)
Q Consensus        63 -------~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  134 (193)
                             +..++++||||+..+.......+..+|++++|+|+.+.-.. +....|.....    .++|+++++||+|+.
T Consensus        84 ~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~-~t~~~~~~~~~----~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         84 EDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCV-QTETVLRQALQ----ERIRPVLFINKVDRA  157 (836)
T ss_pred             ccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCc-cHHHHHHHHHH----cCCCEEEEEEChhhh
Confidence                   56799999999999887778888999999999999875332 23344555543    378999999999997

>PTZ00258 GTP-binding protein; Provisional

Probab=99.43  E-value=7.9e-12  Score=96.73  Aligned_cols=86  Identities=21%  Similarity=0.275  Sum_probs=61.5

Q ss_pred             hhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCC-----------------EEEEEEEcC
Q 029437           13 SLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGK-----------------IKFKAFDLG   72 (193)
Q Consensus        13 ~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-----------------~~~~~~D~~   72 (193)
                      ..++....++|+++|.||+|||||+|++++.....   ...|..++...+.+.+                 ..+.++|+|
T Consensus        14 ~~~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtp   93 (390)
T PTZ00258         14 LLGRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIA   93 (390)
T ss_pred             hhccCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECC
Confidence            34455677899999999999999999998766321   2235567776666542                 348999999


Q ss_pred             Chhh-------hHhhHHhhcccCCEEEEEEECC
Q 029437           73 GHQI-------ARRVWKDYYAKVDAVVYLVDAY   98 (193)
Q Consensus        73 G~~~-------~~~~~~~~~~~~d~vl~v~d~~   98 (193)
                      |...       ....+...++.+|++++|+|+.
T Consensus        94 GLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         94 GLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            9532       2223334567899999999983

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.42  E-value=1.5e-12  Score=97.33  Aligned_cols=150  Identities=19%  Similarity=0.114  Sum_probs=99.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc------------------------------------ccCCCCCcceeEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV------------------------------------QHQPTQYPTSEELS   60 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~------------------------------------~~~~t~~~~~~~~~   60 (193)
                      .+..+|++-+|...=|||||+-+|+.+.-.                                    +...|++.....+.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            456689999999999999999999654321                                    01123333444445


Q ss_pred             eCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHH--HHHHHHHcCCCCCCCcEEEEEeCCCCCCCC-
Q 029437           61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESK--KELDALLSDEALANVPFLVLGNKIDIPYAA-  137 (193)
Q Consensus        61 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~pviiv~nK~D~~~~~-  137 (193)
                      ..+.++.+-|||||+.|...+-.....||+.++++|+...- +++.+  .++..++     .-..+++.+||+|+.+.. 
T Consensus        83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLL-----GIrhvvvAVNKmDLvdy~e  156 (431)
T COG2895          83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASLL-----GIRHVVVAVNKMDLVDYSE  156 (431)
T ss_pred             cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHHh-----CCcEEEEEEeeecccccCH
Confidence            56789999999999999888777888999999999995431 12221  2222332     245689999999998432 


Q ss_pred             -CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChh
Q 029437          138 -SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYG  182 (193)
Q Consensus       138 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  182 (193)
                       ..+++..++.....          +-......+++.||..|.|+-
T Consensus       157 ~~F~~I~~dy~~fa~----------~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         157 EVFEAIVADYLAFAA----------QLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHHHHHH----------HcCCCcceEEechhccCCccc
Confidence             23344444432110          001133589999999999983

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=7.4e-13  Score=97.75  Aligned_cols=163  Identities=20%  Similarity=0.197  Sum_probs=102.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccC--------------------------CCCCcceeEEEeC------CE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ--------------------------PTQYPTSEELSIG------KI   64 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--------------------------~t~~~~~~~~~~~------~~   64 (193)
                      .+.+++|..+|+..-|||||..++++.....+.                          |..+.....+...      -.
T Consensus         7 ~Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R   86 (415)
T COG5257           7 IQPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVR   86 (415)
T ss_pred             CCcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEE
Confidence            367899999999999999999999754322110                          0001111111111      15


Q ss_pred             EEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH-HH
Q 029437           65 KFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE-LR  143 (193)
Q Consensus        65 ~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~-~~  143 (193)
                      .+.+.|.|||+-.-..+.....--|+.++|+.++.+.---+..+.+..+--   ..-..+|++-||+|+.......| ..
T Consensus        87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleI---igik~iiIvQNKIDlV~~E~AlE~y~  163 (415)
T COG5257          87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEI---IGIKNIIIVQNKIDLVSRERALENYE  163 (415)
T ss_pred             EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhh---hccceEEEEecccceecHHHHHHHHH
Confidence            789999999997665555444556999999999875432233333333211   12467899999999984322211 22


Q ss_pred             HhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhcC
Q 029437          144 YHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~~  193 (193)
                      +..+   +..        -..-...+++++||..+.|++.++++|.+++.
T Consensus       164 qIk~---Fvk--------Gt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip  202 (415)
T COG5257         164 QIKE---FVK--------GTVAENAPIIPISAQHKANIDALIEAIEKYIP  202 (415)
T ss_pred             HHHH---Hhc--------ccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence            1111   111        11124478999999999999999999998763

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=3.2e-13  Score=106.43  Aligned_cols=154  Identities=19%  Similarity=0.145  Sum_probs=99.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC--cc--------------------------------ccCCCCCcceeEEEeC
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDER--LV--------------------------------QHQPTQYPTSEELSIG   62 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~   62 (193)
                      .+.+++++++|+..+|||||+.+++..-  ..                                ....|.......++-.
T Consensus       174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~  253 (603)
T KOG0458|consen  174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK  253 (603)
T ss_pred             CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence            3578999999999999999999884321  00                                0111222233344445


Q ss_pred             CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCCh---hhHH---HHHHHHHHHHcCCCCCCCcEEEEEeCCCCC--
Q 029437           63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDK---ERFA---ESKKELDALLSDEALANVPFLVLGNKIDIP--  134 (193)
Q Consensus        63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~---~~~~---~~~~~~~~~~~~~~~~~~pviiv~nK~D~~--  134 (193)
                      ...++++|+||+..|...+......+|+.++|+|++-.   .+|.   +.++ +..++...  .-..+++++||+|+.  
T Consensus       254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~L--gi~qlivaiNKmD~V~W  330 (603)
T KOG0458|consen  254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRSL--GISQLIVAINKMDLVSW  330 (603)
T ss_pred             ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHH-HHHHHHHc--CcceEEEEeecccccCc
Confidence            67899999999999988878888899999999999642   1121   1111 11122221  255689999999998  


Q ss_pred             CCCCHHHHHHhhCCCcccc-CCCccccCCCCCcceEEEEeeeecCCCh
Q 029437          135 YAASEEELRYHLGLSNFTT-GKGKVNLADSNVRPLEVFMCSIVRKMGY  181 (193)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~g~gv  181 (193)
                      .....+++...+.....+. +...        ..+.|++||+.+|+|+
T Consensus       331 sq~RF~eIk~~l~~fL~~~~gf~e--------s~v~FIPiSGl~GeNL  370 (603)
T KOG0458|consen  331 SQDRFEEIKNKLSSFLKESCGFKE--------SSVKFIPISGLSGENL  370 (603)
T ss_pred             cHHHHHHHHHHHHHHHHHhcCccc--------CCcceEecccccCCcc
Confidence            3344555665555333111 1111        3368999999999997

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.41  E-value=5.9e-12  Score=95.32  Aligned_cols=109  Identities=15%  Similarity=0.062  Sum_probs=64.8

Q ss_pred             CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHH
Q 029437           63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEEL  142 (193)
Q Consensus        63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~  142 (193)
                      +.++.++||+|.....   ......+|.++++......+   ++......+      .++|.++++||+|+.+.......
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~---el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~  193 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGD---DLQGIKAGL------MEIADIYVVNKADGEGATNVTIA  193 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccH---HHHHHHHHH------hhhccEEEEEcccccchhHHHHH
Confidence            5778999999854222   12456678888885543332   333333333      36678999999999754432222


Q ss_pred             HHhh--CCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          143 RYHL--GLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       143 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                      ...+  ........        ......+++++||++|.|+++++++|.+.
T Consensus       194 ~~~~~~~l~~l~~~--------~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~  236 (300)
T TIGR00750       194 RLMLALALEEIRRR--------EDGWRPPVLTTSAVEGRGIDELWDAIEEH  236 (300)
T ss_pred             HHHHHHHHhhcccc--------ccCCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence            2111  11110000        00012358999999999999999999875

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.39  E-value=3e-12  Score=100.38  Aligned_cols=133  Identities=20%  Similarity=0.334  Sum_probs=94.1

Q ss_pred             CcceeEEEe-CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCC----------hhhHHHHHHHHHHHHcCCCCCC
Q 029437           53 YPTSEELSI-GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYD----------KERFAESKKELDALLSDEALAN  121 (193)
Q Consensus        53 ~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~  121 (193)
                      |.....+.+ +...+.++|++|+...+.-|.+++.++++||||+++++          ...+.+....+..+.+.....+
T Consensus       224 Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~  303 (389)
T PF00503_consen  224 GITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKN  303 (389)
T ss_dssp             SEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTT
T ss_pred             CeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccccc
Confidence            455666777 88899999999999998888899999999999999863          2457788888999988877789


Q ss_pred             CcEEEEEeCCCCC----CCCC-H---------------HHHHHhhCCCccccCCCccccCCCCC--cceEEEEeeeecCC
Q 029437          122 VPFLVLGNKIDIP----YAAS-E---------------EELRYHLGLSNFTTGKGKVNLADSNV--RPLEVFMCSIVRKM  179 (193)
Q Consensus       122 ~pviiv~nK~D~~----~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~g~  179 (193)
                      .|+|+++||.|+.    .... .               ++..+.+...+...       .....  ..+-+..++|..-.
T Consensus       304 ~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~-------~~~~~~~~~~~~h~t~a~d~~  376 (389)
T PF00503_consen  304 TPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRL-------NRNNSPSRRIYVHFTCATDTE  376 (389)
T ss_dssp             SEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCT-------HSTTTTCS-EEEEEESTTSHH
T ss_pred             CceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHh-------ccCCCCCcceEEEEeeecccH
Confidence            9999999999976    1111 1               11111111111100       01111  44667789999999


Q ss_pred             ChhhHHHhhhhhc
Q 029437          180 GYGDGFKWLSQYI  192 (193)
Q Consensus       180 gv~el~~~i~~~~  192 (193)
                      .+..+|+.+.+.|
T Consensus       377 ~~~~v~~~v~~~i  389 (389)
T PF00503_consen  377 NIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcC
Confidence            9999999887653

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=3e-12  Score=98.12  Aligned_cols=124  Identities=20%  Similarity=0.188  Sum_probs=85.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC--cc-----------------------ccCCCCCcceeEEEeCCEEEEEEEcCChhh
Q 029437           22 KILFLGLDNAGKTTLLHMLKDER--LV-----------------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQI   76 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~--~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~   76 (193)
                      ..+|+.+|.+|||||..+++.-.  ..                       +...++-.....+++.+..+++.|||||+.
T Consensus        14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD   93 (528)
T COG4108          14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED   93 (528)
T ss_pred             ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccc
Confidence            68999999999999999874211  10                       011122235667888999999999999999


Q ss_pred             hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---HHHHHHhhCCCc
Q 029437           77 ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---EEELRYHLGLSN  150 (193)
Q Consensus        77 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~~~~~~  150 (193)
                      +..=.-..+..+|..+.|+|+...-.- +..+++    +-....++|++-.+||.|.....+   .+|+.+.+++..
T Consensus        94 FSEDTYRtLtAvDsAvMVIDaAKGiE~-qT~KLf----eVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~  165 (528)
T COG4108          94 FSEDTYRTLTAVDSAVMVIDAAKGIEP-QTLKLF----EVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQC  165 (528)
T ss_pred             cchhHHHHHHhhheeeEEEecccCccH-HHHHHH----HHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcce
Confidence            877666667789999999999765221 122222    223446999999999999874332   345666666443

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=5.6e-12  Score=96.81  Aligned_cols=154  Identities=16%  Similarity=-0.007  Sum_probs=109.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc------ccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLV------QHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      .|+..|+-.-|||||+..+++..-.      ....|.+......+.++..+.++|.||++++-..+-..+...|..++|+
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV   81 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV   81 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence            5788999999999999999876533      2345777777778888889999999999998877777778899999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI  175 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  175 (193)
                      ++++.-.. +..+. ..+++..  .....++++||+|.......++..++.....             .....+++.+|+
T Consensus        82 ~~deGl~~-qtgEh-L~iLdll--gi~~giivltk~D~~d~~r~e~~i~~Il~~l-------------~l~~~~i~~~s~  144 (447)
T COG3276          82 AADEGLMA-QTGEH-LLILDLL--GIKNGIIVLTKADRVDEARIEQKIKQILADL-------------SLANAKIFKTSA  144 (447)
T ss_pred             eCccCcch-hhHHH-HHHHHhc--CCCceEEEEeccccccHHHHHHHHHHHHhhc-------------cccccccccccc
Confidence            99654211 11121 1222221  1334599999999985544444333333222             014467899999


Q ss_pred             ecCCChhhHHHhhhhhc
Q 029437          176 VRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       176 ~~g~gv~el~~~i~~~~  192 (193)
                      ++|.|+++|.+.|.+..
T Consensus       145 ~~g~GI~~Lk~~l~~L~  161 (447)
T COG3276         145 KTGRGIEELKNELIDLL  161 (447)
T ss_pred             ccCCCHHHHHHHHHHhh
Confidence            99999999999987654

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.38  E-value=2.2e-12  Score=92.74  Aligned_cols=58  Identities=21%  Similarity=0.258  Sum_probs=41.4

Q ss_pred             CCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhcC
Q 029437          121 NVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       121 ~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~~  193 (193)
                      ..|.++++||+|+....  ...+..+.+....               ...+++++||++|.|+++++++|.+..+
T Consensus       148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~---------------~~~~i~~~Sa~~g~gv~~l~~~i~~~~~  207 (207)
T TIGR00073       148 KEADLIVINKADLAEAVGFDVEKMKADAKKIN---------------PEAEIILMSLKTGEGLDEWLEFLEGQVK  207 (207)
T ss_pred             hhCCEEEEEHHHccccchhhHHHHHHHHHHhC---------------CCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence            56789999999997532  2333333332111               2357999999999999999999988754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.37  E-value=8.2e-13  Score=91.29  Aligned_cols=79  Identities=14%  Similarity=0.183  Sum_probs=51.4

Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH--HHHHHhhCCCccccCCCccccCCCCCcc
Q 029437           90 AVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE--EELRYHLGLSNFTTGKGKVNLADSNVRP  167 (193)
Q Consensus        90 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (193)
                      .-++|+|++..+..  .++.      ...... .-++|+||.|+.+....  +.+......-.               ..
T Consensus       120 ~~v~VidvteGe~~--P~K~------gP~i~~-aDllVInK~DLa~~v~~dlevm~~da~~~n---------------p~  175 (202)
T COG0378         120 LRVVVIDVTEGEDI--PRKG------GPGIFK-ADLLVINKTDLAPYVGADLEVMARDAKEVN---------------PE  175 (202)
T ss_pred             eEEEEEECCCCCCC--cccC------CCceeE-eeEEEEehHHhHHHhCccHHHHHHHHHHhC---------------CC
Confidence            66788887665321  0000      011112 45899999999976544  44444333333               45


Q ss_pred             eEEEEeeeecCCChhhHHHhhhhhc
Q 029437          168 LEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       168 ~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .+++++|+++|+|++++++||....
T Consensus       176 ~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         176 APIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             CCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            6899999999999999999998653

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.35  E-value=1.2e-12  Score=97.04  Aligned_cols=56  Identities=21%  Similarity=0.221  Sum_probs=41.3

Q ss_pred             CCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          121 NVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       121 ~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                      ..+-++++||+|+.+..  ..+++.+.+....               ...+++++||++|+|++++.+||..+
T Consensus       230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~ln---------------p~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVN---------------PEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhC---------------CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            45669999999997532  3444444443222               34689999999999999999999875

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.34  E-value=5.7e-12  Score=96.58  Aligned_cols=169  Identities=17%  Similarity=0.154  Sum_probs=80.2

Q ss_pred             HHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCC--cc---cc---CCCCCcceeEEEeCCEEEEEEEcCChhhh
Q 029437            6 WFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDER--LV---QH---QPTQYPTSEELSIGKIKFKAFDLGGHQIA   77 (193)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~--~~---~~---~~t~~~~~~~~~~~~~~~~~~D~~G~~~~   77 (193)
                      .++..+.....  ..++|+|+|.+|+|||||+|++.+-.  ..   +.   ..|..+..+.- -..-.+.+||+||....
T Consensus        23 ~i~~~l~~~~~--~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~   99 (376)
T PF05049_consen   23 KIREALKDIDN--APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTP   99 (376)
T ss_dssp             HHHHHHHHHHH----EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGS
T ss_pred             HHHHHHHHhhc--CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCC
Confidence            34444444433  45899999999999999999996532  11   11   11222222221 11125899999996432


Q ss_pred             HhhH-----HhhcccCCEEEEEEECCChhhHHHHHHH-HHHHHcCCCCCCCcEEEEEeCCCCC---------CCCCHHHH
Q 029437           78 RRVW-----KDYYAKVDAVVYLVDAYDKERFAESKKE-LDALLSDEALANVPFLVLGNKIDIP---------YAASEEEL  142 (193)
Q Consensus        78 ~~~~-----~~~~~~~d~vl~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~pviiv~nK~D~~---------~~~~~~~~  142 (193)
                      ....     ...+..-|.+|++.+-.    |...+-+ ...+-.    .++|+++|-||+|..         .....+++
T Consensus       100 ~f~~~~Yl~~~~~~~yD~fiii~s~r----f~~ndv~La~~i~~----~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~  171 (376)
T PF05049_consen  100 NFPPEEYLKEVKFYRYDFFIIISSER----FTENDVQLAKEIQR----MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKL  171 (376)
T ss_dssp             S--HHHHHHHTTGGG-SEEEEEESSS------HHHHHHHHHHHH----TT-EEEEEE--HHHHHHHHHCC-STT--HHTH
T ss_pred             CCCHHHHHHHccccccCEEEEEeCCC----CchhhHHHHHHHHH----cCCcEEEEEecccccHhhhhccCCcccCHHHH
Confidence            2211     22356779888776642    3333333 333322    489999999999962         12233332


Q ss_pred             HHhhCCCccccCCCccccCCCCCcceEEEEeeeecC--CChhhHHHhhhhh
Q 029437          143 RYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK--MGYGDGFKWLSQY  191 (193)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g--~gv~el~~~i~~~  191 (193)
                      .++.+....      .++.+......++|.+|+..-  .+...|.+.|.+-
T Consensus       172 L~~IR~~c~------~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~d  216 (376)
T PF05049_consen  172 LQEIRENCL------ENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKD  216 (376)
T ss_dssp             HHHHHHHHH------HHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHH------HHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHH
Confidence            222221111      111222234467899998653  4466666666543

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.33  E-value=8e-12  Score=98.93  Aligned_cols=163  Identities=16%  Similarity=0.136  Sum_probs=101.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeC----CEEEEEEEcCChhhhHhhHHhhccc----C
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIG----KIKFKAFDLGGHQIARRVWKDYYAK----V   88 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~----~~~~~~~D~~G~~~~~~~~~~~~~~----~   88 (193)
                      ...+..|+|+|..++|||||+.+|.+.+........++....+...    ..++.+|-+.|...+..+.+-.+..    -
T Consensus        22 ~~~~k~vlvlG~~~~GKttli~~L~~~e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~  101 (472)
T PF05783_consen   22 LPSEKSVLVLGDKGSGKTTLIARLQGIEDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN  101 (472)
T ss_pred             CCCCceEEEEeCCCCchHHHHHHhhccCCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence            4566899999999999999999998766432222222233322222    2578999999987777776655542    3


Q ss_pred             CEEEEEEECCChhhH-HHHHHH----------------------------HHHHHc---CC-------------------
Q 029437           89 DAVVYLVDAYDKERF-AESKKE----------------------------LDALLS---DE-------------------  117 (193)
Q Consensus        89 d~vl~v~d~~~~~~~-~~~~~~----------------------------~~~~~~---~~-------------------  117 (193)
                      -.|++|.|.+.|..+ +.+..|                            |....+   ..                   
T Consensus       102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~  181 (472)
T PF05783_consen  102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES  181 (472)
T ss_pred             eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence            588999999986332 222222                            111100   00                   


Q ss_pred             -----------CCCCCcEEEEEeCCCCCCCCCH---------HHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeec
Q 029437          118 -----------ALANVPFLVLGNKIDIPYAASE---------EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVR  177 (193)
Q Consensus       118 -----------~~~~~pviiv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  177 (193)
                                 ...++|++||++|+|.......         +.+...++...         +    ......+.||++.
T Consensus       182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~c---------L----~yGAsL~yts~~~  248 (472)
T PF05783_consen  182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFC---------L----KYGASLIYTSVKE  248 (472)
T ss_pred             ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHH---------H----hcCCeEEEeeccc
Confidence                       0013899999999997621111         12333232222         1    1346788999999


Q ss_pred             CCChhhHHHhhhhhc
Q 029437          178 KMGYGDGFKWLSQYI  192 (193)
Q Consensus       178 g~gv~el~~~i~~~~  192 (193)
                      ..+++-|+.+|.+.+
T Consensus       249 ~~n~~~L~~yi~h~l  263 (472)
T PF05783_consen  249 EKNLDLLYKYILHRL  263 (472)
T ss_pred             cccHHHHHHHHHHHh
Confidence            999999999998765

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=4.2e-12  Score=102.67  Aligned_cols=163  Identities=19%  Similarity=0.177  Sum_probs=102.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccC---CCCCcceeEE------------------EeCCEEEEEEEcCChhhh
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQ---PTQYPTSEEL------------------SIGKIKFKAFDLGGHQIA   77 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~---~t~~~~~~~~------------------~~~~~~~~~~D~~G~~~~   77 (193)
                      ...-+.|+|+..+|||-|+..+.+.....-.   .|..+....+                  .+.--.+.++||||+++|
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF  553 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF  553 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence            3456889999999999999999776543211   1111111111                  122235789999999999


Q ss_pred             HhhHHhhcccCCEEEEEEECCCh---hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC------CCHHH-------
Q 029437           78 RRVWKDYYAKVDAVVYLVDAYDK---ERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA------ASEEE-------  141 (193)
Q Consensus        78 ~~~~~~~~~~~d~vl~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~------~~~~~-------  141 (193)
                      ..++......||..|+|+|+.+.   +++..+        +.....+.|+|+.+||+|....      ....+       
T Consensus       554 tnlRsrgsslC~~aIlvvdImhGlepqtiESi--------~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k  625 (1064)
T KOG1144|consen  554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIESI--------NLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKK  625 (1064)
T ss_pred             hhhhhccccccceEEEEeehhccCCcchhHHH--------HHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhH
Confidence            99999888999999999999764   222221        2223469999999999998721      11111       


Q ss_pred             -HHHhhC-------CCcccc----CCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          142 -LRYHLG-------LSNFTT----GKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       142 -~~~~~~-------~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                       +...|.       ..+.++    .-...|  ......+-++++||.+|+||.+|+.+|...
T Consensus       626 ~v~~EF~~R~~~ii~efaEQgLN~~LyykN--k~~~~~vsiVPTSA~sGeGipdLl~llv~l  685 (1064)
T KOG1144|consen  626 DVQNEFKERLNNIIVEFAEQGLNAELYYKN--KEMGETVSIVPTSAISGEGIPDLLLLLVQL  685 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccchhheeec--ccccceEEeeecccccCCCcHHHHHHHHHH
Confidence             111111       111111    000011  112245788999999999999999998764

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.30  E-value=2.7e-11  Score=90.57  Aligned_cols=112  Identities=18%  Similarity=0.207  Sum_probs=64.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccccC-----------CCCCcceeE--EEeC--CEEEEEEEcCChh---------
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQ-----------PTQYPTSEE--LSIG--KIKFKAFDLGGHQ---------   75 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-----------~t~~~~~~~--~~~~--~~~~~~~D~~G~~---------   75 (193)
                      .++|+|+|.+|+|||||+|.|++.......           .+.......  +...  ...++++||||-.         
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            589999999999999999999987654321           111112211  2222  2678999999921         


Q ss_pred             ---------hhHhhHHhh---------cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437           76 ---------IARRVWKDY---------YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA  136 (193)
Q Consensus        76 ---------~~~~~~~~~---------~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  136 (193)
                               ++...+...         =.++|++||+++.+...--....+.++.+ .    ..+++|.|+.|+|....
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~L-s----~~vNvIPvIaKaD~lt~  157 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRL-S----KRVNVIPVIAKADTLTP  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHH-T----TTSEEEEEESTGGGS-H
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHh-c----ccccEEeEEecccccCH
Confidence                     111111111         02679999999986532112222444555 2    37889999999999753

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=2.2e-11  Score=100.47  Aligned_cols=125  Identities=22%  Similarity=0.144  Sum_probs=91.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc---------------------ccCCCCCcceeEEEeCC-EEEEEEEcCChhh
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLV---------------------QHQPTQYPTSEELSIGK-IKFKAFDLGGHQI   76 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~---------------------~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~   76 (193)
                      .--+|+|+|+.++|||||..+++...-.                     ....|+......+.+.+ +.++++|||||-.
T Consensus         9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD   88 (697)
T COG0480           9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD   88 (697)
T ss_pred             cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence            4458999999999999999998532211                     01123344455677885 9999999999999


Q ss_pred             hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC---CHHHHHHhhCC
Q 029437           77 ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA---SEEELRYHLGL  148 (193)
Q Consensus        77 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~---~~~~~~~~~~~  148 (193)
                      |.......++-+|++++|+|+.+.-.. +....|+....    .++|.++++||+|.....   ...++.+.+..
T Consensus        89 Ft~EV~rslrvlDgavvVvdaveGV~~-QTEtv~rqa~~----~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~  158 (697)
T COG0480          89 FTIEVERSLRVLDGAVVVVDAVEGVEP-QTETVWRQADK----YGVPRILFVNKMDRLGADFYLVVEQLKERLGA  158 (697)
T ss_pred             cHHHHHHHHHhhcceEEEEECCCCeee-cHHHHHHHHhh----cCCCeEEEEECccccccChhhhHHHHHHHhCC
Confidence            998888888999999999999876332 33345555544    489999999999998432   34456666654

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.29  E-value=9.5e-12  Score=91.45  Aligned_cols=96  Identities=19%  Similarity=0.129  Sum_probs=70.8

Q ss_pred             hhhHhhHHhhcccCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHH-HHHHhhCCCccc
Q 029437           75 QIARRVWKDYYAKVDAVVYLVDAYDKE-RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEE-ELRYHLGLSNFT  152 (193)
Q Consensus        75 ~~~~~~~~~~~~~~d~vl~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~-~~~~~~~~~~~~  152 (193)
                      +++..+...++.++|.+++|+|+.++. ++..+..|+.....    .++|+++|+||+|+....... +..+.+..    
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~----   95 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYRN----   95 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHHH----
Confidence            455566667889999999999999887 78888888765532    589999999999996432211 22222211    


Q ss_pred             cCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          153 TGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                                   ...+++++||++|.|++++|+.|.+.
T Consensus        96 -------------~g~~v~~~SAktg~gi~eLf~~l~~~  121 (245)
T TIGR00157        96 -------------IGYQVLMTSSKNQDGLKELIEALQNR  121 (245)
T ss_pred             -------------CCCeEEEEecCCchhHHHHHhhhcCC
Confidence                         22578999999999999999988653

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.29  E-value=2.6e-11  Score=89.77  Aligned_cols=149  Identities=21%  Similarity=0.151  Sum_probs=98.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeC-CEEEEEEEcCChhh---------hHhhHHh
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIG-KIKFKAFDLGGHQI---------ARRVWKD   83 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~D~~G~~~---------~~~~~~~   83 (193)
                      ......|.++|-.|||||||+++|+.....+   -..|.+++.+..... +..+.+-||.|--+         |+.. .+
T Consensus       175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~AT-Le  253 (410)
T KOG0410|consen  175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQAT-LE  253 (410)
T ss_pred             cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHH-HH
Confidence            3456789999999999999999999554333   234677766666553 45678889999422         2332 33


Q ss_pred             hcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc----EEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccc
Q 029437           84 YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP----FLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVN  159 (193)
Q Consensus        84 ~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p----viiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (193)
                      .+..+|.++.|.|+++|+--.+.... ...++....+..|    ++-|-||.|..+....+|                  
T Consensus       254 eVaeadlllHvvDiShP~ae~q~e~V-l~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E------------------  314 (410)
T KOG0410|consen  254 EVAEADLLLHVVDISHPNAEEQRETV-LHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE------------------  314 (410)
T ss_pred             HHhhcceEEEEeecCCccHHHHHHHH-HHHHHhcCCCcHHHHhHHHhhccccccccccCccc------------------
Confidence            44688999999999998653333333 3333433333333    466778888764332221                  


Q ss_pred             cCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          160 LADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       160 ~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                             ....+.+||.+|.|++++.+.+..++
T Consensus       315 -------~n~~v~isaltgdgl~el~~a~~~kv  340 (410)
T KOG0410|consen  315 -------KNLDVGISALTGDGLEELLKAEETKV  340 (410)
T ss_pred             -------cCCccccccccCccHHHHHHHHHHHh
Confidence                   01146899999999999999887654

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=1.4e-10  Score=86.71  Aligned_cols=161  Identities=17%  Similarity=0.093  Sum_probs=98.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC----ccccC------CCCCcceeEE---------EeCCEEEEEEEcCChhhh
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDER----LVQHQ------PTQYPTSEEL---------SIGKIKFKAFDLGGHQIA   77 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~----~~~~~------~t~~~~~~~~---------~~~~~~~~~~D~~G~~~~   77 (193)
                      ...+++++++|+..||||||.+++..-.    |..+.      .|.+..-..+         ......+.++|.||+...
T Consensus         4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL   83 (522)
T KOG0461|consen    4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL   83 (522)
T ss_pred             CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence            4567999999999999999999996432    21111      1111111111         112356799999999876


Q ss_pred             HhhHHhhcccCCEEEEEEECCChhhHHHHHHH-HHHHHcCCCCCCCcEEEEEeCCCCCCCC----CHHHHHHhhCCCccc
Q 029437           78 RRVWKDYYAKVDAVVYLVDAYDKERFAESKKE-LDALLSDEALANVPFLVLGNKIDIPYAA----SEEELRYHLGLSNFT  152 (193)
Q Consensus        78 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~pviiv~nK~D~~~~~----~~~~~~~~~~~~~~~  152 (193)
                      -.......+-.|..++|+|+.....-+...-. +-++      .....++|+||.|..+..    ..++...........
T Consensus        84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~  157 (522)
T KOG0461|consen   84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLES  157 (522)
T ss_pred             HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHh
Confidence            55444444667999999999765322222211 1122      245668899999987542    223333333222210


Q ss_pred             cCCCccccCCCCCcceEEEEeeeecC----CChhhHHHhhhhhc
Q 029437          153 TGKGKVNLADSNVRPLEVFMCSIVRK----MGYGDGFKWLSQYI  192 (193)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~Sa~~g----~gv~el~~~i~~~~  192 (193)
                      +         ......+++++||..|    +++.|+.+.|..++
T Consensus       158 t---------~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i  192 (522)
T KOG0461|consen  158 T---------GFDGNSPIVEVSAADGYFKEEMIQELKEALESRI  192 (522)
T ss_pred             c---------CcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence            0         1123478999999999    89999999887764

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.26  E-value=7e-11  Score=82.07  Aligned_cols=64  Identities=20%  Similarity=0.285  Sum_probs=42.8

Q ss_pred             EEEEEEEcCChhh----hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCC
Q 029437           64 IKFKAFDLGGHQI----ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKI  131 (193)
Q Consensus        64 ~~~~~~D~~G~~~----~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~  131 (193)
                      ..+.++||||...    ...+...+++.+|++++|.++....+-... ..+......   ....+++|.||.
T Consensus       101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~---~~~~~i~V~nk~  168 (168)
T PF00350_consen  101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDP---DKSRTIFVLNKA  168 (168)
T ss_dssp             CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTT---TCSSEEEEEE-G
T ss_pred             cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcC---CCCeEEEEEcCC
Confidence            3489999999643    235667778999999999999886543333 333333332   234489999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.25  E-value=2.2e-11  Score=86.13  Aligned_cols=119  Identities=20%  Similarity=0.337  Sum_probs=83.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC----ccccCCCCCcceeEEEe-CCEEEEEEEcCChhhhHh-----hHHhhcccCCE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER----LVQHQPTQYPTSEELSI-GKIKFKAFDLGGHQIARR-----VWKDYYAKVDA   90 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~----~~~~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~~~-----~~~~~~~~~d~   90 (193)
                      -||+++|.+||||||+=..+...-    .....+|++..-..+++ ++.-+++||.+|++.+-.     .....+...++
T Consensus         5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~v   84 (295)
T KOG3886|consen    5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQV   84 (295)
T ss_pred             ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehee
Confidence            489999999999999877665333    23344566666666665 458899999999985422     33456789999


Q ss_pred             EEEEEECCChhh---HHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH
Q 029437           91 VVYLVDAYDKER---FAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE  141 (193)
Q Consensus        91 vl~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~  141 (193)
                      +++|+|++..+-   +..-..-++.++  .+.|...+.+..+|+|+......++
T Consensus        85 li~vFDves~e~~~D~~~yqk~Le~ll--~~SP~AkiF~l~hKmDLv~~d~r~~  136 (295)
T KOG3886|consen   85 LIYVFDVESREMEKDFHYYQKCLEALL--QNSPEAKIFCLLHKMDLVQEDAREL  136 (295)
T ss_pred             eeeeeeccchhhhhhHHHHHHHHHHHH--hcCCcceEEEEEeechhcccchHHH
Confidence            999999987642   222223333343  3457888999999999985544443

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=4.8e-10  Score=85.07  Aligned_cols=79  Identities=25%  Similarity=0.348  Sum_probs=59.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeC------------------CEEEEEEEcCChhh--
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIG------------------KIKFKAFDLGGHQI--   76 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~------------------~~~~~~~D~~G~~~--   76 (193)
                      .++++|+|-||+|||||+|+++..... .++|  |+.++.+.+...                  ...+.++|.+|.-.  
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            478999999999999999999988732 2444  677766554332                  25789999998532  


Q ss_pred             -----hHhhHHhhcccCCEEEEEEECC
Q 029437           77 -----ARRVWKDYYAKVDAVVYLVDAY   98 (193)
Q Consensus        77 -----~~~~~~~~~~~~d~vl~v~d~~   98 (193)
                           ....+..-++.+|+++.|+++.
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence                 2345556678999999999996

>smart00053 DYNc Dynamin, GTPase

Probab=99.23  E-value=1.3e-09  Score=79.56  Aligned_cols=115  Identities=15%  Similarity=0.177  Sum_probs=70.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-------CCCC-------Cccee--------------------------
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH-------QPTQ-------YPTSE--------------------------   57 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-------~~t~-------~~~~~--------------------------   57 (193)
                      -.-..++++|+.|+||||+++++.+..+.+.       .|+.       .....                          
T Consensus        24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~  103 (240)
T smart00053       24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV  103 (240)
T ss_pred             CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence            4667899999999999999999988753211       0100       00000                          


Q ss_pred             ------------EEEe--C-CEEEEEEEcCChhh-------------hHhhHHhhcc-cCCEEEEEEECCChhhHHHHHH
Q 029437           58 ------------ELSI--G-KIKFKAFDLGGHQI-------------ARRVWKDYYA-KVDAVVYLVDAYDKERFAESKK  108 (193)
Q Consensus        58 ------------~~~~--~-~~~~~~~D~~G~~~-------------~~~~~~~~~~-~~d~vl~v~d~~~~~~~~~~~~  108 (193)
                                  .++.  + -..+.++||||...             ...+...+++ ..+.+++|+|+...-.-+...+
T Consensus       104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~  183 (240)
T smart00053      104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK  183 (240)
T ss_pred             cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence                        0111  1 14689999999631             2334556666 4568999999865322122223


Q ss_pred             HHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437          109 ELDALLSDEALANVPFLVLGNKIDIPYA  136 (193)
Q Consensus       109 ~~~~~~~~~~~~~~pviiv~nK~D~~~~  136 (193)
                      ..+.+    ...+.|+++|+||.|....
T Consensus       184 ia~~l----d~~~~rti~ViTK~D~~~~  207 (240)
T smart00053      184 LAKEV----DPQGERTIGVITKLDLMDE  207 (240)
T ss_pred             HHHHH----HHcCCcEEEEEECCCCCCc
Confidence            33333    2247899999999999743

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.23  E-value=1.6e-11  Score=80.79  Aligned_cols=88  Identities=17%  Similarity=0.108  Sum_probs=62.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccC--CCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQHQ--PTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAY   98 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~   98 (193)
                      ++++++|+.|+|||+|+.++....+....  +|.+                       +........+.++.+++|++..
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~   57 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD   57 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence            48999999999999999999776664321  2222                       2222234456789999999999


Q ss_pred             ChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437           99 DKERFAESKKELDALLSDEALANVPFLVLGNKIDIP  134 (193)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  134 (193)
                      +.+++...  |...+.. ....+.|.++++||.|+.
T Consensus        58 ~~~s~~~~--~~~~i~~-~~k~dl~~~~~~nk~dl~   90 (124)
T smart00010       58 DRDSADNK--NVPEVLV-GNKSDLPILVGGNRDVLE   90 (124)
T ss_pred             CHHHHHHH--hHHHHHh-cCCCCCcEEEEeechhhH
Confidence            99887654  4444433 333578999999999984

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.20  E-value=9.1e-10  Score=84.92  Aligned_cols=126  Identities=20%  Similarity=0.233  Sum_probs=76.5

Q ss_pred             chHHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcC----Ccc-------------cc--C---CCCCcce---
Q 029437            2 FLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE----RLV-------------QH--Q---PTQYPTS---   56 (193)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~----~~~-------------~~--~---~t~~~~~---   56 (193)
                      +=.+-|++..++.+.   .+.|+|+|+.++|||||++++.+.    +..             +.  .   .|.++..   
T Consensus         2 e~~~iykDIa~RT~G---~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~   78 (492)
T TIGR02836         2 EKVDIYKDIAERTQG---DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPN   78 (492)
T ss_pred             cchhHHHHHHHHhCC---cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccC
Confidence            334567777766554   478999999999999999999876    222             11  1   2333332   


Q ss_pred             eEEEe--C---CEEEEEEEcCChhhh--------H---------------------hhHHhhcc-cCCEEEEEE-ECC--
Q 029437           57 EELSI--G---KIKFKAFDLGGHQIA--------R---------------------RVWKDYYA-KVDAVVYLV-DAY--   98 (193)
Q Consensus        57 ~~~~~--~---~~~~~~~D~~G~~~~--------~---------------------~~~~~~~~-~~d~vl~v~-d~~--   98 (193)
                      ..++.  .   ..+++++||+|-..-        .                     --....+. ++|..++|. |.+  
T Consensus        79 kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~  158 (492)
T TIGR02836        79 EAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTIT  158 (492)
T ss_pred             cceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCcc
Confidence            22222  1   368999999992110        0                     01233445 789998888 764  


Q ss_pred             --ChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCC
Q 029437           99 --DKERFAESKKELDALLSDEALANVPFLVLGNKIDI  133 (193)
Q Consensus        99 --~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~  133 (193)
                        .++.+....+.+-.-++.   .++|+++++||.|-
T Consensus       159 dI~Re~y~~aEe~~i~eLk~---~~kPfiivlN~~dp  192 (492)
T TIGR02836       159 DIPREDYVEAEERVIEELKE---LNKPFIILLNSTHP  192 (492)
T ss_pred             ccccccchHHHHHHHHHHHh---cCCCEEEEEECcCC
Confidence              122233333322222222   59999999999993

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>cd01900 YchF YchF subfamily

Probab=99.15  E-value=2.2e-10  Score=85.13  Aligned_cols=76  Identities=22%  Similarity=0.266  Sum_probs=55.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCCE-----------------EEEEEEcCChhh------
Q 029437           23 ILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGKI-----------------KFKAFDLGGHQI------   76 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~-----------------~~~~~D~~G~~~------   76 (193)
                      |+++|.||||||||+|++++.....   ...|..++.+.+.+.+.                 .+.++|+||...      
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            5799999999999999999887532   23366777666665542                 489999999432      


Q ss_pred             -hHhhHHhhcccCCEEEEEEECC
Q 029437           77 -ARRVWKDYYAKVDAVVYLVDAY   98 (193)
Q Consensus        77 -~~~~~~~~~~~~d~vl~v~d~~   98 (193)
                       ....+...++.+|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence             1222334457899999999974

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=99.15  E-value=5e-11  Score=84.55  Aligned_cols=142  Identities=17%  Similarity=0.219  Sum_probs=91.3

Q ss_pred             CCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECC----------ChhhHHHHHHHHHHHHcCCCC
Q 029437           50 PTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAY----------DKERFAESKKELDALLSDEAL  119 (193)
Q Consensus        50 ~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~----------~~~~~~~~~~~~~~~~~~~~~  119 (193)
                      ||.+...+.++..++.+++.|.+|+.+.+.-|.+++.++..+++++..+          ++...++.......++.-...
T Consensus       185 PTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF  264 (359)
T KOG0085|consen  185 PTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF  264 (359)
T ss_pred             CcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccc
Confidence            4556666677777888999999999988888888888777776665543          355677777888888888888


Q ss_pred             CCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCcc-----ccCCC----ccccCCCCC-cceEEEEeeeecCCChhhHHHhh
Q 029437          120 ANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNF-----TTGKG----KVNLADSNV-RPLEVFMCSIVRKMGYGDGFKWL  188 (193)
Q Consensus       120 ~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~-----~~~~~----~~~~~~~~~-~~~~~~~~Sa~~g~gv~el~~~i  188 (193)
                      .+.++|+..||.|+... ..-+.+.+.+-...-     +.++.    +..--++.. ..+-...+.|+.-+|+.-+|..+
T Consensus       265 ~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaV  344 (359)
T KOG0085|consen  265 QNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAV  344 (359)
T ss_pred             cCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHH
Confidence            89999999999998732 112222222211000     00000    000000111 22345578899999999999887


Q ss_pred             hhh
Q 029437          189 SQY  191 (193)
Q Consensus       189 ~~~  191 (193)
                      .+.
T Consensus       345 kDt  347 (359)
T KOG0085|consen  345 KDT  347 (359)
T ss_pred             HHH
Confidence            654

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=99.15  E-value=1.1e-10  Score=88.40  Aligned_cols=168  Identities=19%  Similarity=0.113  Sum_probs=100.5

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC----------------CCCcceeEEEe-----------------
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLV-QHQP----------------TQYPTSEELSI-----------------   61 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~----------------t~~~~~~~~~~-----------------   61 (193)
                      ..+.++.+++.|+.++|||||.-.|...... ....                +.+....-+-+                 
T Consensus       113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~  192 (527)
T COG5258         113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK  192 (527)
T ss_pred             CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence            3567899999999999999999988655422 1111                11111111111                 


Q ss_pred             ------CCEEEEEEEcCChhhhHhhH--HhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCC
Q 029437           62 ------GKIKFKAFDLGGHQIARRVW--KDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDI  133 (193)
Q Consensus        62 ------~~~~~~~~D~~G~~~~~~~~--~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~  133 (193)
                            .+.-+.++||.|++.+-...  ...-+..|..++++-+++.-+  .+.+...-+   ......|+++++||+|+
T Consensus       193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tkEHLgi---~~a~~lPviVvvTK~D~  267 (527)
T COG5258         193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTKEHLGI---ALAMELPVIVVVTKIDM  267 (527)
T ss_pred             hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhhHhhhh---hhhhcCCEEEEEEeccc
Confidence                  12457999999999875433  334468899999999988743  222222222   22358999999999999


Q ss_pred             CCCCCHHHHHH----hhC----CCccccCCCcc---ccC-CCCCcceEEEEeeeecCCChhhHHHhh
Q 029437          134 PYAASEEELRY----HLG----LSNFTTGKGKV---NLA-DSNVRPLEVFMCSIVRKMGYGDGFKWL  188 (193)
Q Consensus       134 ~~~~~~~~~~~----~~~----~~~~~~~~~~~---~~~-~~~~~~~~~~~~Sa~~g~gv~el~~~i  188 (193)
                      .+......+.+    .+.    .++.....+..   ..+ ......+++|.+|+.+|+|++-|.+.+
T Consensus       268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f  334 (527)
T COG5258         268 VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF  334 (527)
T ss_pred             CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence            86554433222    222    22221111111   111 111135899999999999987555443

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=8.1e-10  Score=81.05  Aligned_cols=158  Identities=19%  Similarity=0.161  Sum_probs=97.5

Q ss_pred             CCCCCccEEEEEcCCCCCHHHHHHHHhcCCc----------cc---------cCCCCCcceeEEEeCCEEEEEEEcCChh
Q 029437           15 GLWQKEAKILFLGLDNAGKTTLLHMLKDERL----------VQ---------HQPTQYPTSEELSIGKIKFKAFDLGGHQ   75 (193)
Q Consensus        15 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~----------~~---------~~~t~~~~~~~~~~~~~~~~~~D~~G~~   75 (193)
                      .+.+.+++|+.+|+.+-|||||..+++..-.          .+         ...|+...-...+..+..+...|+||+-
T Consensus         7 ~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHa   86 (394)
T COG0050           7 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHA   86 (394)
T ss_pred             cCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChH
Confidence            3578899999999999999999988753211          11         1113233333344567889999999999


Q ss_pred             hhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCCCCCHHH--------HHHhh
Q 029437           76 IARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIPYAASEEE--------LRYHL  146 (193)
Q Consensus        76 ~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~~~--------~~~~~  146 (193)
                      .|-..+.....+.|+.|+|++++|..--+...    .++-... -++| +++++||+|+.+..+.-+        +...+
T Consensus        87 DYvKNMItgAaqmDgAILVVsA~dGpmPqTrE----HiLlarq-vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y  161 (394)
T COG0050          87 DYVKNMITGAAQMDGAILVVAATDGPMPQTRE----HILLARQ-VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEY  161 (394)
T ss_pred             HHHHHHhhhHHhcCccEEEEEcCCCCCCcchh----hhhhhhh-cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHc
Confidence            88765555557789999999998853221111    1111111 2554 678899999986433322        23333


Q ss_pred             CCCccccCCCccccCCCCCcceEEEEeeeec-CC-------ChhhHHHhhhhhc
Q 029437          147 GLSNFTTGKGKVNLADSNVRPLEVFMCSIVR-KM-------GYGDGFKWLSQYI  192 (193)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-g~-------gv~el~~~i~~~~  192 (193)
                      +++.               ...+++..||.. .+       .+.||++++..++
T Consensus       162 ~f~g---------------d~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yi  200 (394)
T COG0050         162 GFPG---------------DDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYI  200 (394)
T ss_pred             CCCC---------------CCcceeechhhhhhcCCcchHHHHHHHHHHHHhcC
Confidence            3333               345677777644 22       3466666666554

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.13  E-value=1.8e-09  Score=87.73  Aligned_cols=115  Identities=17%  Similarity=0.149  Sum_probs=71.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccC----CCCCcceeEEEeCCEEEEEEEcCChhhh-------Hhh---HHhh
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQ----PTQYPTSEELSIGKIKFKAFDLGGHQIA-------RRV---WKDY   84 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~---~~~~   84 (193)
                      ..++|+++|.+|+||||++|++++.......    .|...........+..+.++||||....       ..+   ...+
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~  196 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF  196 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence            3468999999999999999999987643221    1222222223446788999999996532       111   1122


Q ss_pred             cc--cCCEEEEEEECCChhhH---HHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437           85 YA--KVDAVVYLVDAYDKERF---AESKKELDALLSDEALANVPFLVLGNKIDIPY  135 (193)
Q Consensus        85 ~~--~~d~vl~v~d~~~~~~~---~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~  135 (193)
                      +.  .+|++|+|..+......   ..+.+.+..++...  --.-+||++|+.|..+
T Consensus       197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~--Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPS--IWFNAIVTLTHAASAP  250 (763)
T ss_pred             HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHH--hHcCEEEEEeCCccCC
Confidence            23  57999999887532211   12334444443321  1245799999999885

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.11  E-value=8.4e-10  Score=84.71  Aligned_cols=78  Identities=23%  Similarity=0.273  Sum_probs=56.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCC-----------------EEEEEEEcCChhh----
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGK-----------------IKFKAFDLGGHQI----   76 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-----------------~~~~~~D~~G~~~----   76 (193)
                      ++|+++|.||+|||||+|++++.....   ...|..++.+.+...+                 ..+.++|+||...    
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            689999999999999999999877321   2236667666655543                 2589999999532    


Q ss_pred             ---hHhhHHhhcccCCEEEEEEECC
Q 029437           77 ---ARRVWKDYYAKVDAVVYLVDAY   98 (193)
Q Consensus        77 ---~~~~~~~~~~~~d~vl~v~d~~   98 (193)
                         ....+...++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence               1122333467899999999984

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=5.3e-10  Score=89.86  Aligned_cols=113  Identities=19%  Similarity=0.213  Sum_probs=80.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCC----------C----------CCcceeEEE-----eCCEEEEEEEc
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQP----------T----------QYPTSEELS-----IGKIKFKAFDL   71 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----------t----------~~~~~~~~~-----~~~~~~~~~D~   71 (193)
                      ...-.+++++|+-.+|||+|+..|....-+...+          +          +..+..++-     ....-+++.||
T Consensus       125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT  204 (971)
T KOG0468|consen  125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT  204 (971)
T ss_pred             cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence            3455689999999999999999997654332111          0          011111111     12356899999


Q ss_pred             CChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437           72 GGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP  134 (193)
Q Consensus        72 ~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  134 (193)
                      |||..+.......+..+|++++|+|+.+.-.+ +....++...+    .+.|+++++||+|+.
T Consensus       205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVml-ntEr~ikhaiq----~~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVML-NTERIIKHAIQ----NRLPIVVVINKVDRL  262 (971)
T ss_pred             CCcccchHHHHHHhhhcceEEEEEEcccCcee-eHHHHHHHHHh----ccCcEEEEEehhHHH
Confidence            99999998888888999999999999887554 33344444444    489999999999976

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=99.05  E-value=7.3e-10  Score=80.00  Aligned_cols=82  Identities=22%  Similarity=0.485  Sum_probs=68.5

Q ss_pred             CcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCC----------hhhHHHHHHHHHHHHcCCCCCCC
Q 029437           53 YPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYD----------KERFAESKKELDALLSDEALANV  122 (193)
Q Consensus        53 ~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~  122 (193)
                      ++....+..+..+++.+|.+|+...+.-|-.++..+.++|+|+.+++          ...+++...+.+.+++......+
T Consensus       191 GIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ti  270 (379)
T KOG0099|consen  191 GIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTI  270 (379)
T ss_pred             ceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhh
Confidence            34444556667889999999999998888889999999999999864          35677888888888888788899


Q ss_pred             cEEEEEeCCCCC
Q 029437          123 PFLVLGNKIDIP  134 (193)
Q Consensus       123 pviiv~nK~D~~  134 (193)
                      .+|+.+||.|+.
T Consensus       271 svIlFLNKqDll  282 (379)
T KOG0099|consen  271 SVILFLNKQDLL  282 (379)
T ss_pred             heeEEecHHHHH
Confidence            999999999976

>cd01858 NGP_1 NGP-1

Probab=99.05  E-value=1e-09  Score=75.52  Aligned_cols=69  Identities=17%  Similarity=0.233  Sum_probs=45.7

Q ss_pred             HHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeC-CEEEEEEEcCC
Q 029437            4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIG-KIKFKAFDLGG   73 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~G   73 (193)
                      +++++.++.-. ......+|+++|.||+|||||+|++.+.......++.+.+.....+. +..+.++||||
T Consensus        87 ~~~l~~~~~~~-~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPG  156 (157)
T cd01858          87 IQLLRQFSKLH-SDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG  156 (157)
T ss_pred             HHHHHHHHhhh-ccccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcC
Confidence            45555544321 12346789999999999999999999877665555554433332222 23478999999

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01855 YqeH YqeH

Probab=99.04  E-value=9.2e-10  Score=78.09  Aligned_cols=102  Identities=19%  Similarity=0.207  Sum_probs=63.9

Q ss_pred             hhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC-HHHHHHhh-CCCcc
Q 029437           74 HQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS-EEELRYHL-GLSNF  151 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-~~~~~~~~-~~~~~  151 (193)
                      ...++.++..++..+|++++|+|+.++..-  ..   ..+..  ...+.|+++|+||+|+.+... ..+..... .... 
T Consensus        21 ~~~~~~~l~~~~~~ad~il~VvD~~~~~~~--~~---~~l~~--~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~-   92 (190)
T cd01855          21 EDFILNLLSSISPKKALVVHVVDIFDFPGS--LI---PRLRL--FGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAA-   92 (190)
T ss_pred             HHHHHHHHHhcccCCcEEEEEEECccCCCc--cc---hhHHH--hcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHH-
Confidence            334677888889999999999999876421  11   11111  124789999999999974322 22221111 0000 


Q ss_pred             ccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          152 TTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                       .        ........++++||++|.|+++++++|.+.+
T Consensus        93 -~--------~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l  124 (190)
T cd01855          93 -A--------GLGLKPKDVILISAKKGWGVEELINAIKKLA  124 (190)
T ss_pred             -h--------hcCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence             0        0000123579999999999999999998754

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01859 MJ1464 MJ1464

Probab=99.02  E-value=7.9e-10  Score=75.93  Aligned_cols=93  Identities=17%  Similarity=0.161  Sum_probs=59.9

Q ss_pred             HhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCc
Q 029437           78 RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGK  157 (193)
Q Consensus        78 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  157 (193)
                      +.+..+...++|++++|+|+.++.....  ..+...+.   ..+.|+++++||+|+.+.....+.......         
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~---------   68 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVL---ELGKKLLIVLNKADLVPKEVLEKWKSIKES---------   68 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHH---hCCCcEEEEEEhHHhCCHHHHHHHHHHHHh---------
Confidence            4566777788999999999987643211  11222222   136899999999998632111111100000         


Q ss_pred             cccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          158 VNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       158 ~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                              ...+++.+||++|.|++++++.|.+.+
T Consensus        69 --------~~~~~~~iSa~~~~gi~~L~~~l~~~~   95 (156)
T cd01859          69 --------EGIPVVYVSAKERLGTKILRRTIKELA   95 (156)
T ss_pred             --------CCCcEEEEEccccccHHHHHHHHHHHH
Confidence                    124579999999999999999998653

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.02  E-value=1.1e-08  Score=81.25  Aligned_cols=129  Identities=18%  Similarity=0.214  Sum_probs=86.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCC--C--cceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQ--Y--PTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~t~--~--~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      .++-+.+.++|+.++|||.+++++.++.+.... .+.  .  .+...+......+.+-|.+.. ....+.... ..+|.+
T Consensus       422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~  499 (625)
T KOG1707|consen  422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA  499 (625)
T ss_pred             cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence            356689999999999999999999998766521 111  1  122222333344555555543 221111111 678999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC-----CCCHHHHHHhhCCCc
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY-----AASEEELRYHLGLSN  150 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~-----~~~~~~~~~~~~~~~  150 (193)
                      .++||++++.++......+......   ...|+++|++|+|+..     ...+++...++++..
T Consensus       500 ~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~  560 (625)
T KOG1707|consen  500 CLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPP  560 (625)
T ss_pred             EEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCCC
Confidence            9999999999988777766665333   6899999999999973     234566766666555

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.01  E-value=7.9e-09  Score=78.18  Aligned_cols=117  Identities=18%  Similarity=0.248  Sum_probs=71.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-----------CCCCCcceeEEE--eC--CEEEEEEEcCChhhh-----
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH-----------QPTQYPTSEELS--IG--KIKFKAFDLGGHQIA-----   77 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----------~~t~~~~~~~~~--~~--~~~~~~~D~~G~~~~-----   77 (193)
                      --.++|+++|++|+||||++|.|++......           .++.........  .+  ...++++||||-..+     
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            4669999999999999999999987643221           122222222222  22  267999999992111     


Q ss_pred             ---------HhhHHhhc--------------ccCCEEEEEEECCChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCC
Q 029437           78 ---------RRVWKDYY--------------AKVDAVVYLVDAYDKERFAESK-KELDALLSDEALANVPFLVLGNKIDI  133 (193)
Q Consensus        78 ---------~~~~~~~~--------------~~~d~vl~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~  133 (193)
                               ..++..++              .++|++||.+..+.- ++..++ +.+..+-     ..+-+|-|+.|+|.
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls-----~~vNlIPVI~KaD~  174 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLS-----KRVNLIPVIAKADT  174 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHh-----cccCeeeeeecccc
Confidence                     11111111              267999999987543 222232 3444442     36778999999999


Q ss_pred             CCCCCHH
Q 029437          134 PYAASEE  140 (193)
Q Consensus       134 ~~~~~~~  140 (193)
                      ....+..
T Consensus       175 lT~~El~  181 (373)
T COG5019         175 LTDDELA  181 (373)
T ss_pred             CCHHHHH
Confidence            8544433

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=99.01  E-value=1.4e-09  Score=79.13  Aligned_cols=161  Identities=20%  Similarity=0.167  Sum_probs=92.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc--cCCCCCccee-EEEeCCEEEEEEEcCCh----------hhhHhhHHhh
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ--HQPTQYPTSE-ELSIGKIKFKAFDLGGH----------QIARRVWKDY   84 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~-~~~~~~~~~~~~D~~G~----------~~~~~~~~~~   84 (193)
                      ....+++++|.+|+|||||++.+.+..-..  ..++.+.... ....-+-.+.++|.||-          ..+..+.+.+
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y  213 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSY  213 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHH
Confidence            455899999999999999999998776443  1223333222 22223458899999991          1122333333


Q ss_pred             cc---cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC--HHHHHHhhCCCccccCCCccc
Q 029437           85 YA---KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS--EEELRYHLGLSNFTTGKGKVN  159 (193)
Q Consensus        85 ~~---~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~  159 (193)
                      +.   +.-.+++.+|++.+  ++..+....+++.+   .++|..+|+||+|.....-  ...........+.  +....+
T Consensus       214 ~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~--~l~~~~  286 (320)
T KOG2486|consen  214 LLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQ--GLIRGV  286 (320)
T ss_pred             HHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehh--hccccc
Confidence            32   34466777888665  33344444444433   5899999999999873321  0000000011010  000001


Q ss_pred             cCCCCCcceEEEEeeeecCCChhhHHHhhh
Q 029437          160 LADSNVRPLEVFMCSIVRKMGYGDGFKWLS  189 (193)
Q Consensus       160 ~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~  189 (193)
                      ..    ...+|+.+|+.++.|+++|+-.|.
T Consensus       287 f~----~~~Pw~~~Ssvt~~Grd~Ll~~i~  312 (320)
T KOG2486|consen  287 FL----VDLPWIYVSSVTSLGRDLLLLHIA  312 (320)
T ss_pred             ee----ccCCceeeecccccCceeeeeehh
Confidence            11    234577899999999998875554

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.00  E-value=8.6e-10  Score=86.90  Aligned_cols=156  Identities=18%  Similarity=0.223  Sum_probs=110.1

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCc---ceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYP---TSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      +.-.++|++|+|..++|||+|++++....+.+...+.+.   ....+.....-+.+.|.+|....+     +-.++|++|
T Consensus        26 rsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~aQ-----ft~wvdavI  100 (749)
T KOG0705|consen   26 RSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDAQ-----FCQWVDAVV  100 (749)
T ss_pred             cccchhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCchhh-----hhhhccceE
Confidence            456889999999999999999999999998875543332   233344566788888988854333     336789999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC---CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY---AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      +||...+..+++.+..+...+-.......+|+++++++.-..-   ....+.-...+..+.               ..+.
T Consensus       101 fvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~---------------krcs  165 (749)
T KOG0705|consen  101 FVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQM---------------KRCS  165 (749)
T ss_pred             EEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhc---------------Cccc
Confidence            9999999999998888777775444556788888888643321   111111111121222               3467


Q ss_pred             EEEeeeecCCChhhHHHhhhhh
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                      ++++++.+|.++...|+.+...
T Consensus       166 y~et~atyGlnv~rvf~~~~~k  187 (749)
T KOG0705|consen  166 YYETCATYGLNVERVFQEVAQK  187 (749)
T ss_pred             eeecchhhhhhHHHHHHHHHHH
Confidence            8999999999999999887654

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.99  E-value=2.1e-09  Score=74.85  Aligned_cols=57  Identities=26%  Similarity=0.339  Sum_probs=41.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccee--EEEeCCEEEEEEEcCCh
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSE--ELSIGKIKFKAFDLGGH   74 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~G~   74 (193)
                      ....++++++|.||+|||||+|++.+.......+.++.+..  .+..+ ..+.++||||.
T Consensus       114 ~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-~~~~l~DtPGi  172 (172)
T cd04178         114 IKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-KKVKLLDSPGI  172 (172)
T ss_pred             cccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-CCEEEEECcCC
Confidence            34568999999999999999999998876554444443332  22222 36889999993

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.96  E-value=3.2e-08  Score=71.37  Aligned_cols=86  Identities=17%  Similarity=0.216  Sum_probs=61.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC--ccccC-CCCCcceeEEEeCCEEEEEEEcCChhhhHhhH-------HhhcccC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER--LVQHQ-PTQYPTSEELSIGKIKFKAFDLGGHQIARRVW-------KDYYAKV   88 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~-~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~-------~~~~~~~   88 (193)
                      -..|++++|.|.+|||||+..++...  ...+. .|.-...+.+.+.+..+++.|+||.-...+.-       -...+.+
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArta  140 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTA  140 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecc
Confidence            35689999999999999999987543  22332 34455667788999999999999954432211       2234678


Q ss_pred             CEEEEEEECCChhhHH
Q 029437           89 DAVVYLVDAYDKERFA  104 (193)
Q Consensus        89 d~vl~v~d~~~~~~~~  104 (193)
                      |.+++|.|++..+.-.
T Consensus       141 DlilMvLDatk~e~qr  156 (364)
T KOG1486|consen  141 DLILMVLDATKSEDQR  156 (364)
T ss_pred             cEEEEEecCCcchhHH
Confidence            9999999998765433

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.96  E-value=6.8e-09  Score=78.97  Aligned_cols=115  Identities=17%  Similarity=0.244  Sum_probs=71.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccC----------CCCCcceeEEEe--C--CEEEEEEEcCChhhh------
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ----------PTQYPTSEELSI--G--KIKFKAFDLGGHQIA------   77 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----------~t~~~~~~~~~~--~--~~~~~~~D~~G~~~~------   77 (193)
                      --.++++++|++|.|||||+|.|+...+....          .|..........  +  ..+++++||||-...      
T Consensus        19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~   98 (366)
T KOG2655|consen   19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC   98 (366)
T ss_pred             CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence            35699999999999999999999887554321          122222222222  2  267899999992110      


Q ss_pred             --------HhhHHhh-----------cc--cCCEEEEEEECCChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437           78 --------RRVWKDY-----------YA--KVDAVVYLVDAYDKERFAESK-KELDALLSDEALANVPFLVLGNKIDIPY  135 (193)
Q Consensus        78 --------~~~~~~~-----------~~--~~d~vl~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~~~  135 (193)
                              ...+..+           +.  ++|++||.+..+.. ++..++ +.++.+-     ..+.+|-|+.|+|...
T Consensus        99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~-----~~vNiIPVI~KaD~lT  172 (366)
T KOG2655|consen   99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS-----KKVNLIPVIAKADTLT  172 (366)
T ss_pred             chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh-----ccccccceeeccccCC
Confidence                    1111111           12  78999999987432 122222 3333331     4788899999999885


Q ss_pred             CCC
Q 029437          136 AAS  138 (193)
Q Consensus       136 ~~~  138 (193)
                      ...
T Consensus       173 ~~E  175 (366)
T KOG2655|consen  173 KDE  175 (366)
T ss_pred             HHH
Confidence            443

>PRK12289 GTPase RsgA; Reviewed

Probab=98.95  E-value=3.7e-09  Score=81.40  Aligned_cols=88  Identities=11%  Similarity=0.070  Sum_probs=61.6

Q ss_pred             hhcccCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccC
Q 029437           83 DYYAKVDAVVYLVDAYDKE-RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLA  161 (193)
Q Consensus        83 ~~~~~~d~vl~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (193)
                      ..+.++|.+++|+|+.++. ....+..++....    ..++|+++|+||+|+.......++.+.+..             
T Consensus        85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~-------------  147 (352)
T PRK12289         85 PPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQQQWQDRLQQ-------------  147 (352)
T ss_pred             hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHHHHHHHHHHh-------------
Confidence            3468899999999998775 3445556655442    258999999999999743222223332211             


Q ss_pred             CCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          162 DSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       162 ~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                          ...+++.+||++|.|+++++++|...
T Consensus       148 ----~g~~v~~iSA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        148 ----WGYQPLFISVETGIGLEALLEQLRNK  173 (352)
T ss_pred             ----cCCeEEEEEcCCCCCHHHHhhhhccc
Confidence                12468999999999999999988653

>cd01858 NGP_1 NGP-1

Probab=98.94  E-value=3.3e-09  Score=72.97  Aligned_cols=89  Identities=21%  Similarity=0.200  Sum_probs=57.3

Q ss_pred             hcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCC
Q 029437           84 YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADS  163 (193)
Q Consensus        84 ~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (193)
                      .+..+|.+++|+|+.++..-  ....+...+... ..+.|+++|+||+|+.+.....+....+....             
T Consensus         5 ~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~-------------   68 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSKEY-------------   68 (157)
T ss_pred             hhhhCCEEEEEEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhcCC-------------
Confidence            35789999999999887321  122233333221 24689999999999964322222333332211             


Q ss_pred             CCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          164 NVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                        . ..++.+||+.+.|++++.++|...
T Consensus        69 --~-~~~~~iSa~~~~~~~~L~~~l~~~   93 (157)
T cd01858          69 --P-TIAFHASINNPFGKGSLIQLLRQF   93 (157)
T ss_pred             --c-EEEEEeeccccccHHHHHHHHHHH
Confidence              1 236889999999999999998754

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.90  E-value=4e-09  Score=80.05  Aligned_cols=165  Identities=21%  Similarity=0.141  Sum_probs=99.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-------------------cCCCCCccee-----------------EEEe-
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-------------------HQPTQYPTSE-----------------ELSI-   61 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-------------------~~~t~~~~~~-----------------~~~~-   61 (193)
                      -+.+++++|+..+|||||+..+++.+...                   ....++....                 .++| 
T Consensus       132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv  211 (641)
T KOG0463|consen  132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV  211 (641)
T ss_pred             eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence            46899999999999999998886654320                   0001111111                 1111 


Q ss_pred             -----CCEEEEEEEcCChhhhHh--hHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437           62 -----GKIKFKAFDLGGHQIARR--VWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP  134 (193)
Q Consensus        62 -----~~~~~~~~D~~G~~~~~~--~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  134 (193)
                           ...-++++|++|+++|-.  .+.+.-+-.|..++++.++-.     +.....+.+...-...+|+.+|+||+|+.
T Consensus       212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-----IiGmTKEHLgLALaL~VPVfvVVTKIDMC  286 (641)
T KOG0463|consen  212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-----IIGMTKEHLGLALALHVPVFVVVTKIDMC  286 (641)
T ss_pred             eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-----ceeccHHhhhhhhhhcCcEEEEEEeeccC
Confidence                 123479999999998854  333334567888888887543     22222333332333589999999999999


Q ss_pred             CCCCHHHHHHhhC----CCcc------ccCCCcc---ccCCCCCcceEEEEeeeecCCChhhHHHhh
Q 029437          135 YAASEEELRYHLG----LSNF------TTGKGKV---NLADSNVRPLEVFMCSIVRKMGYGDGFKWL  188 (193)
Q Consensus       135 ~~~~~~~~~~~~~----~~~~------~~~~~~~---~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i  188 (193)
                      ++...+|.++.+.    .+..      ....+..   ..+=...+-+++|.+|..+|.|++-+..++
T Consensus       287 PANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL  353 (641)
T KOG0463|consen  287 PANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL  353 (641)
T ss_pred             cHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence            8876666444332    1111      1111111   111112256899999999999998776554

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.86  E-value=3.9e-08  Score=74.53  Aligned_cols=122  Identities=24%  Similarity=0.219  Sum_probs=80.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc----cCCCCCcceeEEEeC-------------------C------------
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ----HQPTQYPTSEELSIG-------------------K------------   63 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~-------------------~------------   63 (193)
                      ...=|+++|.=..||||+++.++..+++.    ..||.+.-...+.++                   +            
T Consensus        57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf  136 (532)
T KOG1954|consen   57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF  136 (532)
T ss_pred             cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence            34569999999999999999999999875    334443322211111                   0            


Q ss_pred             ----------EEEEEEEcCChh-----------hhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCC
Q 029437           64 ----------IKFKAFDLGGHQ-----------IARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANV  122 (193)
Q Consensus        64 ----------~~~~~~D~~G~~-----------~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (193)
                                -.++++||||.-           .+....+.+..++|.++++||...-+--.+..+.+..+    ....-
T Consensus       137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aL----kG~Ed  212 (532)
T KOG1954|consen  137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDAL----KGHED  212 (532)
T ss_pred             HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHh----hCCcc
Confidence                      248999999942           23456677788999999999985433222333333333    33355


Q ss_pred             cEEEEEeCCCCCCCCCHHHHHHhhC
Q 029437          123 PFLVLGNKIDIPYAASEEELRYHLG  147 (193)
Q Consensus       123 pviiv~nK~D~~~~~~~~~~~~~~~  147 (193)
                      .+-+|.||.|..   ..++++..++
T Consensus       213 kiRVVLNKADqV---dtqqLmRVyG  234 (532)
T KOG1954|consen  213 KIRVVLNKADQV---DTQQLMRVYG  234 (532)
T ss_pred             eeEEEecccccc---CHHHHHHHHH
Confidence            677899999986   5556555554

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.85  E-value=8.9e-09  Score=77.56  Aligned_cols=88  Identities=18%  Similarity=0.063  Sum_probs=62.6

Q ss_pred             HhhcccCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCcccc
Q 029437           82 KDYYAKVDAVVYLVDAYDKE-RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNL  160 (193)
Q Consensus        82 ~~~~~~~d~vl~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (193)
                      +..+.++|.+++|+|+.++. ++..+.+|+.....    .++|+++|+||+|+.+...........  ..          
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~--~~----------  136 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEA--LA----------  136 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHH--Hh----------
Confidence            44578999999999999887 77777776665532    478999999999997431111111111  00          


Q ss_pred             CCCCCcceEEEEeeeecCCChhhHHHhhhh
Q 029437          161 ADSNVRPLEVFMCSIVRKMGYGDGFKWLSQ  190 (193)
Q Consensus       161 ~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~  190 (193)
                           ...+++.+||+++.|+++++++|..
T Consensus       137 -----~g~~v~~vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         137 -----LGYPVLAVSAKTGEGLDELREYLKG  161 (287)
T ss_pred             -----CCCeEEEEECCCCccHHHHHhhhcc
Confidence                 1257899999999999999988764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=2e-08  Score=76.25  Aligned_cols=165  Identities=21%  Similarity=0.208  Sum_probs=95.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-----------------cCCCCCcceeEE---------Ee-----------
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-----------------HQPTQYPTSEEL---------SI-----------   61 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-----------------~~~t~~~~~~~~---------~~-----------   61 (193)
                      -++|++++|...+|||||+..++.++...                 ...|....-+.+         .+           
T Consensus       166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e  245 (591)
T KOG1143|consen  166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE  245 (591)
T ss_pred             eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence            46899999999999999998886554321                 001111110000         11           


Q ss_pred             -CCEEEEEEEcCChhhhHhhHHhhcc--cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC
Q 029437           62 -GKIKFKAFDLGGHQIARRVWKDYYA--KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS  138 (193)
Q Consensus        62 -~~~~~~~~D~~G~~~~~~~~~~~~~--~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~  138 (193)
                       ...-++++|++|+.+|....-..+.  ..|..++|+++...... ..++.+--+    ...++|+.++++|+|+.....
T Consensus       246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~----~AL~iPfFvlvtK~Dl~~~~~  320 (591)
T KOG1143|consen  246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLI----AALNIPFFVLVTKMDLVDRQG  320 (591)
T ss_pred             hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHH----HHhCCCeEEEEEeeccccchh
Confidence             1234799999999988754433333  46889999998665321 111111111    124899999999999986544


Q ss_pred             HHHHHHhhC-------CCcccc--CCCccccC----CCCCcceEEEEeeeecCCChhhHHHhh
Q 029437          139 EEELRYHLG-------LSNFTT--GKGKVNLA----DSNVRPLEVFMCSIVRKMGYGDGFKWL  188 (193)
Q Consensus       139 ~~~~~~~~~-------~~~~~~--~~~~~~~~----~~~~~~~~~~~~Sa~~g~gv~el~~~i  188 (193)
                      .+...+++.       +.....  ....+.+.    ....+..++|-+|+.+|+|++-+..++
T Consensus       321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL  383 (591)
T KOG1143|consen  321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL  383 (591)
T ss_pred             HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence            444333332       211110  00011110    011245789999999999998766554

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.83  E-value=1.9e-08  Score=75.33  Aligned_cols=84  Identities=24%  Similarity=0.356  Sum_probs=62.4

Q ss_pred             CCCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCC--CCCcceeEEEeCC-----------------EEEEEEEcCCh
Q 029437           15 GLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQP--TQYPTSEELSIGK-----------------IKFKAFDLGGH   74 (193)
Q Consensus        15 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~~~-----------------~~~~~~D~~G~   74 (193)
                      ++.-.+++++|+|.|++|||||+|+++...... +.|  |++++...+....                 ..++++|++|.
T Consensus        15 gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL   94 (391)
T KOG1491|consen   15 GRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL   94 (391)
T ss_pred             cCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence            444567899999999999999999999887553 333  7777766655432                 56899999985


Q ss_pred             hhh-------HhhHHhhcccCCEEEEEEECC
Q 029437           75 QIA-------RRVWKDYYAKVDAVVYLVDAY   98 (193)
Q Consensus        75 ~~~-------~~~~~~~~~~~d~vl~v~d~~   98 (193)
                      -..       ..-+...++.+|+++.|+++.
T Consensus        95 vkGAs~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   95 VKGASAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             ccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence            432       334455568899999999985

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.82  E-value=2.7e-08  Score=71.27  Aligned_cols=115  Identities=20%  Similarity=0.288  Sum_probs=76.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc----cCCCCCcceeEEEeCCEEEEEEEcCChhhhHh---hHHhhcccCCEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ----HQPTQYPTSEELSIGKIKFKAFDLGGHQIARR---VWKDYYAKVDAVVY   93 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~~~~~~~~~d~vl~   93 (193)
                      .+|+++|...|||||+.+.+.+...+.    ...|..+....+...-+.+.+||.||+-.+-.   -....++++.+.++
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif  107 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF  107 (347)
T ss_pred             ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence            579999999999999998877654322    12244445555555568899999999865432   12456788999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcC-CCCCCCcEEEEEeCCCCCCC
Q 029437           94 LVDAYDKERFAESKKELDALLSD-EALANVPFLVLGNKIDIPYA  136 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~pviiv~nK~D~~~~  136 (193)
                      |+|+.+. -.+.+..+...+-.. .-.+++.+=+.+.|.|....
T Consensus       108 vIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd  150 (347)
T KOG3887|consen  108 VIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD  150 (347)
T ss_pred             EEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence            9999654 122333333322221 13368888899999998743

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.81  E-value=1.6e-08  Score=68.29  Aligned_cols=52  Identities=21%  Similarity=0.274  Sum_probs=37.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccCCCCC--cceeEEEeCCEEEEEEEcCCh
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQY--PTSEELSIGKIKFKAFDLGGH   74 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~D~~G~   74 (193)
                      +++++|.+|+|||||+|++.+..........+  .....+..++ .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence            89999999999999999999887654322222  2233344433 6799999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.79  E-value=1.3e-08  Score=77.18  Aligned_cols=86  Identities=19%  Similarity=0.105  Sum_probs=57.9

Q ss_pred             hcccCCEEEEEEECCChhhHHH-HHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC-CHHHHHHhhCCCccccCCCccccC
Q 029437           84 YYAKVDAVVYLVDAYDKERFAE-SKKELDALLSDEALANVPFLVLGNKIDIPYAA-SEEELRYHLGLSNFTTGKGKVNLA  161 (193)
Q Consensus        84 ~~~~~d~vl~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  161 (193)
                      ...++|.+++|+|+.++..... +..++.....    .++|+++|+||+|+.... ...+....+.  .           
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~~~--~-----------  139 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDDLEEARELLALYR--A-----------  139 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCCHHHHHHHHHHHH--H-----------
Confidence            3578999999999988754433 3445444322    478999999999996221 1111112111  0           


Q ss_pred             CCCCcceEEEEeeeecCCChhhHHHhhhh
Q 029437          162 DSNVRPLEVFMCSIVRKMGYGDGFKWLSQ  190 (193)
Q Consensus       162 ~~~~~~~~~~~~Sa~~g~gv~el~~~i~~  190 (193)
                          ...+++++||++|.|++++++.|..
T Consensus       140 ----~g~~v~~vSA~~g~gi~~L~~~l~g  164 (298)
T PRK00098        140 ----IGYDVLELSAKEGEGLDELKPLLAG  164 (298)
T ss_pred             ----CCCeEEEEeCCCCccHHHHHhhccC
Confidence                1246899999999999999998754

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.79  E-value=2.8e-08  Score=74.92  Aligned_cols=56  Identities=20%  Similarity=0.383  Sum_probs=41.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccee--EEEeCCEEEEEEEcCCh
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSE--ELSIGKIKFKAFDLGGH   74 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~G~   74 (193)
                      ...++++++|.||+|||||+|++.+.......+..+.+..  .+..+ ..+.++||||.
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPGi  176 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLG-KGLELLDTPGI  176 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeC-CcEEEEECCCc
Confidence            4568999999999999999999998876554444443322  22222 35889999995

>cd01859 MJ1464 MJ1464

Probab=98.78  E-value=4.6e-08  Score=67.14  Aligned_cols=57  Identities=26%  Similarity=0.292  Sum_probs=40.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEE-eCCEEEEEEEcCCh
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS-IGKIKFKAFDLGGH   74 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~D~~G~   74 (193)
                      ....+++++|.+|+||||+++++.+.......++.+.+..... ..+..+.+|||||.
T Consensus        99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpGi  156 (156)
T cd01859          99 GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPGV  156 (156)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence            3557899999999999999999997765555555554432111 12347899999993

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.78  E-value=3.1e-08  Score=76.28  Aligned_cols=89  Identities=18%  Similarity=0.110  Sum_probs=63.1

Q ss_pred             cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCC
Q 029437           85 YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSN  164 (193)
Q Consensus        85 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (193)
                      ..++|.+++|++.....++..+..|+....    ..++|+++|+||+|+.+...............           +  
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~-----------~--  180 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYR-----------N--  180 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHHHH-----------h--
Confidence            457999999999987778888888876442    24789999999999975432222221111100           0  


Q ss_pred             CcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          165 VRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                       ...+++++||+++.|+++++++|...
T Consensus       181 -~g~~v~~vSA~tg~GideL~~~L~~k  206 (347)
T PRK12288        181 -IGYRVLMVSSHTGEGLEELEAALTGR  206 (347)
T ss_pred             -CCCeEEEEeCCCCcCHHHHHHHHhhC
Confidence             12578999999999999999998754

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.74  E-value=3.8e-08  Score=73.84  Aligned_cols=56  Identities=18%  Similarity=0.327  Sum_probs=39.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcc--eeEEEeCCEEEEEEEcCCh
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPT--SEELSIGKIKFKAFDLGGH   74 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~D~~G~   74 (193)
                      ...++++++|.||+|||||+|++.+.......+..+.+  ...+... ..+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence            45689999999999999999999987654433333222  2233333 25789999997

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.74  E-value=3.1e-08  Score=79.17  Aligned_cols=115  Identities=21%  Similarity=0.121  Sum_probs=81.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc---------------------ccCCCCCcceeEEEeCCEEEEEEEcCChhhh
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLV---------------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQIA   77 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~   77 (193)
                      +--+|.+.-.-.+||||+-++++...-.                     +...|.......+.|.+.+++++|||||..|
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF  117 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF  117 (721)
T ss_pred             hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence            3347888889999999999987532211                     1223444555667788999999999999988


Q ss_pred             HhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC
Q 029437           78 RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS  138 (193)
Q Consensus        78 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~  138 (193)
                      .-.....++-.|+.++|+++...-. .+....|++.-.    -++|.|..+||+|...+..
T Consensus       118 T~EVeRALrVlDGaVlvl~aV~GVq-sQt~tV~rQ~~r----y~vP~i~FiNKmDRmGa~~  173 (721)
T KOG0465|consen  118 TFEVERALRVLDGAVLVLDAVAGVE-SQTETVWRQMKR----YNVPRICFINKMDRMGASP  173 (721)
T ss_pred             EEEehhhhhhccCeEEEEEccccee-hhhHHHHHHHHh----cCCCeEEEEehhhhcCCCh
Confidence            7777777788898888888866532 123334444422    3899999999999875543

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.74  E-value=1.1e-07  Score=68.24  Aligned_cols=119  Identities=16%  Similarity=0.201  Sum_probs=69.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc--cC-----C---CCCc--ceeEEEeCC--EEEEEEEcCCh--------
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ--HQ-----P---TQYP--TSEELSIGK--IKFKAFDLGGH--------   74 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~-----~---t~~~--~~~~~~~~~--~~~~~~D~~G~--------   74 (193)
                      +--+|+|+|+|.+|.|||||+|.++......  ..     |   |...  ..+.++-++  .+++++||||-        
T Consensus        43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~n  122 (336)
T KOG1547|consen   43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDN  122 (336)
T ss_pred             ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccc
Confidence            3467999999999999999999987554322  11     1   1111  223334444  57899999992        


Q ss_pred             ----------hhhHhhH--------Hhhcc--cCCEEEEEEECCChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCC
Q 029437           75 ----------QIARRVW--------KDYYA--KVDAVVYLVDAYDKERFAESK-KELDALLSDEALANVPFLVLGNKIDI  133 (193)
Q Consensus        75 ----------~~~~~~~--------~~~~~--~~d~vl~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~  133 (193)
                                +.+...+        +..++  ++|+++|.+..+.- ++..++ +.++.+.     .-+.++-|+-|+|.
T Consensus       123 cWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt-----~vvNvvPVIakaDt  196 (336)
T KOG1547|consen  123 CWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLT-----EVVNVVPVIAKADT  196 (336)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHh-----hhheeeeeEeeccc
Confidence                      1122211        11222  67899998887543 233222 3333332     14567888999998


Q ss_pred             CCCCCHHH
Q 029437          134 PYAASEEE  141 (193)
Q Consensus       134 ~~~~~~~~  141 (193)
                      ..-.+..+
T Consensus       197 lTleEr~~  204 (336)
T KOG1547|consen  197 LTLEERSA  204 (336)
T ss_pred             ccHHHHHH
Confidence            74333333

>cd01855 YqeH YqeH

Probab=98.72  E-value=3.7e-08  Score=69.85  Aligned_cols=54  Identities=26%  Similarity=0.402  Sum_probs=35.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc--------cCCCCCcceeE--EEeCCEEEEEEEcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ--------HQPTQYPTSEE--LSIGKIKFKAFDLGG   73 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--------~~~t~~~~~~~--~~~~~~~~~~~D~~G   73 (193)
                      ...+++++|.+|+|||||+|++.+.....        ..+..+.+...  +..+. .+.++||||
T Consensus       126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG  189 (190)
T cd01855         126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPG  189 (190)
T ss_pred             cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcC
Confidence            34689999999999999999998754321        11112222222  22222 579999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.71  E-value=4.2e-08  Score=67.30  Aligned_cols=81  Identities=17%  Similarity=0.148  Sum_probs=52.4

Q ss_pred             CEEEEEEECCChhhHHHHHHHHH-HHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437           89 DAVVYLVDAYDKERFAESKKELD-ALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRP  167 (193)
Q Consensus        89 d~vl~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (193)
                      |.+++|+|+.++.+...  .++. ..+.   ..++|+++|+||+|+.+.....+....+...                ..
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~---~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~----------------~~   59 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIERVLIK---EKGKKLILVLNKADLVPKEVLRKWLAYLRHS----------------YP   59 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHHHHHh---cCCCCEEEEEechhcCCHHHHHHHHHHHHhh----------------CC
Confidence            78999999988754321  2222 2222   2479999999999996432111222122111                12


Q ss_pred             eEEEEeeeecCCChhhHHHhhhh
Q 029437          168 LEVFMCSIVRKMGYGDGFKWLSQ  190 (193)
Q Consensus       168 ~~~~~~Sa~~g~gv~el~~~i~~  190 (193)
                      ..++.+||++|.|++++.+.|.+
T Consensus        60 ~~ii~vSa~~~~gi~~L~~~i~~   82 (155)
T cd01849          60 TIPFKISATNGQGIEKKESAFTK   82 (155)
T ss_pred             ceEEEEeccCCcChhhHHHHHHH
Confidence            46789999999999999998865

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>TIGR00092 GTP-binding protein YchF

Probab=98.71  E-value=1.1e-07  Score=73.29  Aligned_cols=78  Identities=18%  Similarity=0.159  Sum_probs=58.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCc-cc-c--CCCCCcceeEEEeCC-----------------EEEEEEEcCChhhh--
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERL-VQ-H--QPTQYPTSEELSIGK-----------------IKFKAFDLGGHQIA--   77 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~-~~-~--~~t~~~~~~~~~~~~-----------------~~~~~~D~~G~~~~--   77 (193)
                      ++++|+|.|++|||||++++++... .. .  ..|..++...+...+                 ..+.+.|.||....  
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            6899999999999999999998875 22 2  235677776666543                 46899999995432  


Q ss_pred             -----HhhHHhhcccCCEEEEEEECC
Q 029437           78 -----RRVWKDYYAKVDAVVYLVDAY   98 (193)
Q Consensus        78 -----~~~~~~~~~~~d~vl~v~d~~   98 (193)
                           ...+...++.+|++++|+++.
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                 224445668999999999984

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=98.70  E-value=1.1e-08  Score=78.13  Aligned_cols=162  Identities=17%  Similarity=0.088  Sum_probs=100.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC----------------------------------ccccCCCCCcceeEEEeC
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDER----------------------------------LVQHQPTQYPTSEELSIG   62 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~----------------------------------~~~~~~t~~~~~~~~~~~   62 (193)
                      .+.++++.++|...+||||+-.++....                                  -+....|+......++..
T Consensus        76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte  155 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE  155 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence            3678999999999999999988763111                                  011122444455666777


Q ss_pred             CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh---hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH
Q 029437           63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE---RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE  139 (193)
Q Consensus        63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~  139 (193)
                      ..++++.|.||+..|...+-....++|.-++|+++.-.+   .|+.=.+.-...+......-...|+++||+|-+.....
T Consensus       156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs  235 (501)
T KOG0459|consen  156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS  235 (501)
T ss_pred             ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcc
Confidence            789999999999999877777778899999999984321   12111111111111111234567999999998743222


Q ss_pred             ----HHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHH
Q 029437          140 ----EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGF  185 (193)
Q Consensus       140 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~  185 (193)
                          +|..+.+.... +.  ...    .......+++||..+|.++.+..
T Consensus       236 ~eRy~E~~~k~~~fL-r~--~g~----n~~~d~~f~p~sg~tG~~~k~~~  278 (501)
T KOG0459|consen  236 NERYEECKEKLQPFL-RK--LGF----NPKPDKHFVPVSGLTGANVKDRT  278 (501)
T ss_pred             hhhHHHHHHHHHHHH-HH--hcc----cCCCCceeeecccccccchhhcc
Confidence                22333332221 10  000    01144689999999999987754

>cd01856 YlqF YlqF

Probab=98.70  E-value=4.3e-08  Score=68.34  Aligned_cols=97  Identities=21%  Similarity=0.161  Sum_probs=61.1

Q ss_pred             cCChh-hhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCC
Q 029437           71 LGGHQ-IARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLS  149 (193)
Q Consensus        71 ~~G~~-~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~  149 (193)
                      .||+. +........+..+|.+++|+|+.++.....  ..+...+     .+.|+++++||+|+.+.....+..+.+...
T Consensus         2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~   74 (171)
T cd01856           2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN--PLLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFESK   74 (171)
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC--hhhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHhc
Confidence            35543 334455667789999999999987643211  1111111     357999999999996321111111111111


Q ss_pred             ccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          150 NFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                                       ...++.+||+++.|++++.+.|...
T Consensus        75 -----------------~~~vi~iSa~~~~gi~~L~~~l~~~   99 (171)
T cd01856          75 -----------------GEKVLFVNAKSGKGVKKLLKAAKKL   99 (171)
T ss_pred             -----------------CCeEEEEECCCcccHHHHHHHHHHH
Confidence                             1357899999999999999988764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.69  E-value=3.1e-09  Score=81.58  Aligned_cols=124  Identities=18%  Similarity=0.090  Sum_probs=89.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC-----------------c----cccCCCCCcceeEEEeCCEEEEEEEcCChhhhHh
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER-----------------L----VQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARR   79 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~-----------------~----~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~   79 (193)
                      -+|+++..-.+||||...++....                 |    .....|+......++|++++++++||||+..|+-
T Consensus        38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l  117 (753)
T KOG0464|consen   38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL  117 (753)
T ss_pred             hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence            378999999999999999874221                 0    0123355566778899999999999999999998


Q ss_pred             hHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---HHHHHHhhCCC
Q 029437           80 VWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---EEELRYHLGLS  149 (193)
Q Consensus        80 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~~~~~  149 (193)
                      ....+++-.|+++.|+|++..-..+.+ ..|++.    ...++|-++.+||+|...+..   .+.+.+.++..
T Consensus       118 everclrvldgavav~dasagve~qtl-tvwrqa----dk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak  185 (753)
T KOG0464|consen  118 EVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQA----DKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAK  185 (753)
T ss_pred             EHHHHHHHhcCeEEEEeccCCccccee-eeehhc----cccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCc
Confidence            888899999999999999765332222 223332    335899999999999975432   23355555533

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.68  E-value=4.9e-08  Score=73.23  Aligned_cols=97  Identities=22%  Similarity=0.202  Sum_probs=62.5

Q ss_pred             cCChhh-hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCC
Q 029437           71 LGGHQI-ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLS  149 (193)
Q Consensus        71 ~~G~~~-~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~  149 (193)
                      .|||.. ........+..+|++++|+|+.++.+...  ..+...+     .+.|+++|+||+|+.+.....+..+.+...
T Consensus         4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~   76 (276)
T TIGR03596         4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEEK   76 (276)
T ss_pred             ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHHc
Confidence            466643 34455667789999999999987643211  1222232     267999999999996321112222222110


Q ss_pred             ccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          150 NFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                                       ...++.+||+++.|++++.+.|.+.
T Consensus        77 -----------------~~~vi~iSa~~~~gi~~L~~~i~~~  101 (276)
T TIGR03596        77 -----------------GIKALAINAKKGKGVKKIIKAAKKL  101 (276)
T ss_pred             -----------------CCeEEEEECCCcccHHHHHHHHHHH
Confidence                             1357899999999999999888754

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.67  E-value=1.6e-06  Score=69.23  Aligned_cols=84  Identities=14%  Similarity=0.160  Sum_probs=56.0

Q ss_pred             EEEEEEEcCCh-------------hhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeC
Q 029437           64 IKFKAFDLGGH-------------QIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNK  130 (193)
Q Consensus        64 ~~~~~~D~~G~-------------~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK  130 (193)
                      -+..+.|+||.             +....+...++.+..++|+|+--.+-+.   -+...-.+.......+...|+|+||
T Consensus       412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDA---ERSnVTDLVsq~DP~GrRTIfVLTK  488 (980)
T KOG0447|consen  412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDA---ERSIVTDLVSQMDPHGRRTIFVLTK  488 (980)
T ss_pred             ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcch---hhhhHHHHHHhcCCCCCeeEEEEee
Confidence            36789999994             3345567788899999999986432211   1112222222334457788999999


Q ss_pred             CCCCC--CCCHHHHHHhhCCCc
Q 029437          131 IDIPY--AASEEELRYHLGLSN  150 (193)
Q Consensus       131 ~D~~~--~~~~~~~~~~~~~~~  150 (193)
                      +|+..  -.+++.+.+.+.-..
T Consensus       489 VDlAEknlA~PdRI~kIleGKL  510 (980)
T KOG0447|consen  489 VDLAEKNVASPSRIQQIIEGKL  510 (980)
T ss_pred             cchhhhccCCHHHHHHHHhcCc
Confidence            99983  457888888887555

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.66  E-value=1.5e-07  Score=70.73  Aligned_cols=119  Identities=17%  Similarity=0.142  Sum_probs=77.1

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcC-------Cc---cc-----cCCCCC--cceeEEEeC--CEEEEEEEcCChhh
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDE-------RL---VQ-----HQPTQY--PTSEELSIG--KIKFKAFDLGGHQI   76 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~-------~~---~~-----~~~t~~--~~~~~~~~~--~~~~~~~D~~G~~~   76 (193)
                      +.+.+++|+-+|+..-|||||..+++.-       ++   .+     .....+  ++...++|.  ...+.-.|+||+-.
T Consensus        50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD  129 (449)
T KOG0460|consen   50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD  129 (449)
T ss_pred             cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence            4578899999999999999999887421       11   11     011222  344455554  45677889999998


Q ss_pred             hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC
Q 029437           77 ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS  138 (193)
Q Consensus        77 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~  138 (193)
                      |-..+-....+-|+.|+|+.++|..-- +.++.+.-. .+.  .-..+++.+||.|+.++.+
T Consensus       130 YIKNMItGaaqMDGaILVVaatDG~MP-QTrEHlLLA-rQV--GV~~ivvfiNKvD~V~d~e  187 (449)
T KOG0460|consen  130 YIKNMITGAAQMDGAILVVAATDGPMP-QTREHLLLA-RQV--GVKHIVVFINKVDLVDDPE  187 (449)
T ss_pred             HHHHhhcCccccCceEEEEEcCCCCCc-chHHHHHHH-HHc--CCceEEEEEecccccCCHH
Confidence            876655556778999999999986422 222211111 111  2346789999999985443

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.66  E-value=4.6e-08  Score=75.99  Aligned_cols=101  Identities=18%  Similarity=0.290  Sum_probs=64.9

Q ss_pred             hhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccc
Q 029437           74 HQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFT  152 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~  152 (193)
                      .+.+..+...+...++++++|+|+.+...  .....+....     .+.|+++|+||+|+.+. ...+++.+...... .
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~--s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~-k  121 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG--SLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRA-K  121 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCC--CccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHH-H
Confidence            55778888888889999999999977642  1222222222     26799999999999743 23333322211000 0


Q ss_pred             cCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          153 TGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                      .         ......+++.+||++|.|++++++.|.+.
T Consensus       122 ~---------~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       122 E---------LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             H---------cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            0         00011358899999999999999998653

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01856 YlqF YlqF

Probab=98.66  E-value=7.5e-08  Score=67.16  Aligned_cols=56  Identities=18%  Similarity=0.290  Sum_probs=38.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCc--ceeEEEeCCEEEEEEEcCCh
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYP--TSEELSIGKIKFKAFDLGGH   74 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~D~~G~   74 (193)
                      ...++++++|.+|+|||||++++.+..+....+..+.  ....+..+ ..+.++||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence            4557999999999999999999998776443322221  12222332 46789999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.66  E-value=7.7e-08  Score=69.68  Aligned_cols=84  Identities=18%  Similarity=0.184  Sum_probs=55.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCc--cccCC-CCCcceeEEEeCCEEEEEEEcCChhhhH-------hhHHhhcccCCE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERL--VQHQP-TQYPTSEELSIGKIKFKAFDLGGHQIAR-------RVWKDYYAKVDA   90 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~-t~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~d~   90 (193)
                      -++.++|.|.+||||++..+.+..-  +...- |.-...+...+.+-++.+.|+||.-...       .+.-...+-|..
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl  139 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL  139 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence            3899999999999999999886541  11221 2222344556778899999999953321       111223457899


Q ss_pred             EEEEEECCChhhHH
Q 029437           91 VVYLVDAYDKERFA  104 (193)
Q Consensus        91 vl~v~d~~~~~~~~  104 (193)
                      +++|.|+..|-+..
T Consensus       140 i~~vld~~kp~~hk  153 (358)
T KOG1487|consen  140 IFIVLDVLKPLSHK  153 (358)
T ss_pred             EEEEeeccCcccHH
Confidence            99999998764433

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=4.5e-07  Score=72.49  Aligned_cols=143  Identities=17%  Similarity=0.145  Sum_probs=83.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA   97 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~   97 (193)
                      ...+-++|+||||+|||||++.+..+--.+....+.--...+.....++++..+|..  ..++ ....+-+|.||+++|.
T Consensus        67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~D--l~~m-iDvaKIaDLVlLlIdg  143 (1077)
T COG5192          67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSD--LHQM-IDVAKIADLVLLLIDG  143 (1077)
T ss_pred             CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChHH--HHHH-HhHHHhhheeEEEecc
Confidence            356778899999999999999987643211111111112234456678999999833  3333 3344668999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437           98 YDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI  175 (193)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  175 (193)
                      +-.-.. +..+++.-+. .   .+.| ++-|+|..|+... .......+.+.-.+++.          .....++|..|.
T Consensus       144 nfGfEM-ETmEFLnil~-~---HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtE----------iyqGaKlFylsg  208 (1077)
T COG5192         144 NFGFEM-ETMEFLNILI-S---HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTE----------IYQGAKLFYLSG  208 (1077)
T ss_pred             ccCcee-hHHHHHHHHh-h---cCCCceEEEEeecccccChHHHHHHHHHHhhhHHHH----------HcCCceEEEecc
Confidence            765222 2223333332 2   2444 5689999999843 33344555444333211          113456777776


Q ss_pred             ecC
Q 029437          176 VRK  178 (193)
Q Consensus       176 ~~g  178 (193)
                      ..+
T Consensus       209 V~n  211 (1077)
T COG5192         209 VEN  211 (1077)
T ss_pred             ccc
Confidence            543

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.64  E-value=2.1e-07  Score=82.26  Aligned_cols=112  Identities=20%  Similarity=0.209  Sum_probs=67.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcccc-----CC--CCCcce-eEEEeCCEEEEEEEcCChh--------hhHhhHHhh
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQH-----QP--TQYPTS-EELSIGKIKFKAFDLGGHQ--------IARRVWKDY   84 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~--t~~~~~-~~~~~~~~~~~~~D~~G~~--------~~~~~~~~~   84 (193)
                      .=.+|+|++|+||||++..- +.+++-.     ..  ..+.+. ....+.+ .-.++||+|..        .....+..+
T Consensus       112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~-~avliDtaG~y~~~~~~~~~~~~~W~~f  189 (1169)
T TIGR03348       112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD-EAVLIDTAGRYTTQDSDPEEDAAAWLGF  189 (1169)
T ss_pred             CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC-CEEEEcCCCccccCCCcccccHHHHHHH
Confidence            34789999999999999986 3344321     11  112222 1222333 55699999922        112223222


Q ss_pred             c---------ccCCEEEEEEECCC-----hhh----HHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437           85 Y---------AKVDAVVYLVDAYD-----KER----FAESKKELDALLSDEALANVPFLVLGNKIDIPY  135 (193)
Q Consensus        85 ~---------~~~d~vl~v~d~~~-----~~~----~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~  135 (193)
                      +         +..++||+++|+.+     ++.    ...++..+.++....+ .+.||.+++||+|+.+
T Consensus       190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg-~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG-ARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecchhhc
Confidence            2         46899999999854     211    1344444555544333 4899999999999884

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.62  E-value=1.1e-07  Score=72.68  Aligned_cols=57  Identities=19%  Similarity=0.238  Sum_probs=43.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeC-CEEEEEEEcCCh
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIG-KIKFKAFDLGGH   74 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~G~   74 (193)
                      ....+++|+|-||+||||++|+|.+.......+.++.+.....+. ...+.++||||.
T Consensus       130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGi  187 (322)
T COG1161         130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGI  187 (322)
T ss_pred             ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCCeEEecCCCc
Confidence            456899999999999999999999998776665555544333321 234899999994

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.61  E-value=1.6e-06  Score=58.63  Aligned_cols=109  Identities=18%  Similarity=0.256  Sum_probs=59.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeC--CEEEEEEEcC-Ch---------------------
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIG--KIKFKAFDLG-GH---------------------   74 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~D~~-G~---------------------   74 (193)
                      ..++|+|.|+||+||||++.++...--.....--+.....++-+  .+-|.+.|+. |.                     
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v   83 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNV   83 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeH
Confidence            45799999999999999998876322111111112223333322  2446666665 21                     


Q ss_pred             hhh----HhhHHhhcccCCEEEEEEECCChhh--HHHHHHHHHHHHcCCCCCCCcEEEEEeCCCC
Q 029437           75 QIA----RRVWKDYYAKVDAVVYLVDAYDKER--FAESKKELDALLSDEALANVPFLVLGNKIDI  133 (193)
Q Consensus        75 ~~~----~~~~~~~~~~~d~vl~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~  133 (193)
                      +.+    .......+..+|++  ++|---+-.  -....+.+.+++.    .+.|+|..+.+.+.
T Consensus        84 ~~le~i~~~al~rA~~~aDvI--IIDEIGpMElks~~f~~~ve~vl~----~~kpliatlHrrsr  142 (179)
T COG1618          84 EGLEEIAIPALRRALEEADVI--IIDEIGPMELKSKKFREAVEEVLK----SGKPLIATLHRRSR  142 (179)
T ss_pred             HHHHHHhHHHHHHHhhcCCEE--EEecccchhhccHHHHHHHHHHhc----CCCcEEEEEecccC
Confidence            111    12223334456655  456543311  1345555556654    48899999998776

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.61  E-value=2.8e-07  Score=63.38  Aligned_cols=22  Identities=41%  Similarity=0.525  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      -++++|+.|+|||||++.+...
T Consensus         2 ~~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           2 VTVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc
Confidence            3689999999999999988754

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.60  E-value=1.1e-07  Score=64.12  Aligned_cols=51  Identities=24%  Similarity=0.251  Sum_probs=34.8

Q ss_pred             HhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437           82 KDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY  135 (193)
Q Consensus        82 ~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~  135 (193)
                      ...+..+|++++|+|+.++.+..  ...+..++.... .++|+++++||+|+.+
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~--~~~l~~~l~~~~-~~k~~iivlNK~DL~~   56 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFR--PPDLERYVKEVD-PRKKNILLLNKADLLT   56 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccC--CHHHHHHHHhcc-CCCcEEEEEechhcCC
Confidence            34568899999999998875422  122333332222 5789999999999964

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.57  E-value=3.1e-08  Score=73.32  Aligned_cols=161  Identities=16%  Similarity=0.118  Sum_probs=94.8

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCccccC------CCC--------------------C---------cceeEEE
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ------PTQ--------------------Y---------PTSEELS   60 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~------~t~--------------------~---------~~~~~~~   60 (193)
                      .++..++|+-+|+.--||||+.+++.+.......      .|+                    .         ......+
T Consensus        34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~  113 (466)
T KOG0466|consen   34 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCD  113 (466)
T ss_pred             hheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcc
Confidence            3567899999999999999999998654321100      000                    0         0000000


Q ss_pred             eCC--------EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHH--HHHcCCCCCCCcEEEEEeC
Q 029437           61 IGK--------IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELD--ALLSDEALANVPFLVLGNK  130 (193)
Q Consensus        61 ~~~--------~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~--~~~~~~~~~~~pviiv~nK  130 (193)
                      ..+        ..+.+.|.||++-.-..+.....-.|+.++++..+.+.---+..+.+.  +++     .-+.++++-||
T Consensus       114 ~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM-----~LkhiiilQNK  188 (466)
T KOG0466|consen  114 RPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM-----KLKHIIILQNK  188 (466)
T ss_pred             cCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh-----hhceEEEEech
Confidence            000        357899999998765544333334577777776654211111112222  222     23567999999


Q ss_pred             CCCCCCCCHHH-HHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          131 IDIPYAASEEE-LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       131 ~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +|+.......+ ..+...+..           .......+++++||.-++|++-+.++|++++
T Consensus       189 iDli~e~~A~eq~e~I~kFi~-----------~t~ae~aPiiPisAQlkyNId~v~eyivkkI  240 (466)
T KOG0466|consen  189 IDLIKESQALEQHEQIQKFIQ-----------GTVAEGAPIIPISAQLKYNIDVVCEYIVKKI  240 (466)
T ss_pred             hhhhhHHHHHHHHHHHHHHHh-----------ccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence            99985433322 222221111           1112456899999999999999999999876

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.56  E-value=2.2e-07  Score=63.74  Aligned_cols=54  Identities=20%  Similarity=0.322  Sum_probs=37.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc----CCCCCcceeEEEeCCEEEEEEEcCCh
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH----QPTQYPTSEELSIGKIKFKAFDLGGH   74 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~G~   74 (193)
                      ....+++++|.||+||||++|++.+......    ..|.....  ...+ ..+.++||||.
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~-~~~~liDtPG~  155 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD-NKIKLLDTPGI  155 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec-CCEEEEECCCC
Confidence            4568899999999999999999998663221    12333322  2232 46899999993

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.56  E-value=1.1e-06  Score=67.37  Aligned_cols=66  Identities=18%  Similarity=0.118  Sum_probs=38.1

Q ss_pred             CEEEEEEEcCChhhhH----hhHHhh--cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437           63 KIKFKAFDLGGHQIAR----RVWKDY--YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY  135 (193)
Q Consensus        63 ~~~~~~~D~~G~~~~~----~~~~~~--~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~  135 (193)
                      +..+.++||+|.....    ..+...  ....|.+++|+|+.....   ..+....+...    --+--+++||.|...
T Consensus       222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d---~~~~a~~f~~~----~~~~giIlTKlD~~~  293 (336)
T PRK14974        222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND---AVEQAREFNEA----VGIDGVILTKVDADA  293 (336)
T ss_pred             CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh---HHHHHHHHHhc----CCCCEEEEeeecCCC
Confidence            4579999999964321    111222  135789999999965432   22222222211    112478999999974

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.53  E-value=1.6e-07  Score=70.85  Aligned_cols=97  Identities=21%  Similarity=0.215  Sum_probs=62.4

Q ss_pred             cCChhh-hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCC
Q 029437           71 LGGHQI-ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLS  149 (193)
Q Consensus        71 ~~G~~~-~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~  149 (193)
                      .|||.. ........+..+|++++|+|+.++.+...  ..+...+     .+.|+++|+||+|+.+.....+..+.+.. 
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~-   78 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFEE-   78 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHHH-
Confidence            567643 33455667789999999999987643211  2223332     26899999999999632111222222210 


Q ss_pred             ccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          150 NFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                                      ....++.+||+++.|++++.+.|.+.
T Consensus        79 ----------------~~~~vi~vSa~~~~gi~~L~~~l~~~  104 (287)
T PRK09563         79 ----------------QGIKALAINAKKGQGVKKILKAAKKL  104 (287)
T ss_pred             ----------------cCCeEEEEECCCcccHHHHHHHHHHH
Confidence                            01357889999999999999887654

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.53  E-value=5.6e-06  Score=60.23  Aligned_cols=82  Identities=16%  Similarity=0.021  Sum_probs=53.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC--Ccccc----CCCCCcceeEEEe---CCEEEEEEEcCChhhhH------hhHHh
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDE--RLVQH----QPTQYPTSEELSI---GKIKFKAFDLGGHQIAR------RVWKD   83 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~--~~~~~----~~t~~~~~~~~~~---~~~~~~~~D~~G~~~~~------~~~~~   83 (193)
                      +-..|.|+|++++|||+|+|++.+.  .|...    ..|.+........   .+..+.++||+|.....      .....
T Consensus         6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~   85 (224)
T cd01851           6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF   85 (224)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence            4457899999999999999999988  55422    2244443333333   35789999999964321      11122


Q ss_pred             hccc--CCEEEEEEECCCh
Q 029437           84 YYAK--VDAVVYLVDAYDK  100 (193)
Q Consensus        84 ~~~~--~d~vl~v~d~~~~  100 (193)
                      .+..  ++.+||..+....
T Consensus        86 ~l~~llss~~i~n~~~~~~  104 (224)
T cd01851          86 ALATLLSSVLIYNSWETIL  104 (224)
T ss_pred             HHHHHHhCEEEEeccCccc
Confidence            2223  7888888887543

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.50  E-value=2e-07  Score=63.72  Aligned_cols=57  Identities=18%  Similarity=0.170  Sum_probs=33.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccCC-----CCCc----ceeEEEeCCEEEEEEEcCChhhhH
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQHQP-----TQYP----TSEELSIGKIKFKAFDLGGHQIAR   78 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-----t~~~----~~~~~~~~~~~~~~~D~~G~~~~~   78 (193)
                      -.++++|++|||||||+|.|..........     ..+.    ...-+..+. ...++||||...+.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~-g~~iIDTPGf~~~~  101 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD-GGYIIDTPGFRSFG  101 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT-SEEEECSHHHHT--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC-CcEEEECCCCCccc
Confidence            479999999999999999999875322111     0111    122223322 34789999976543

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.47  E-value=2.3e-06  Score=65.31  Aligned_cols=23  Identities=39%  Similarity=0.534  Sum_probs=19.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHh
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~   41 (193)
                      ....|+++|++|+||||++..+.
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA  135 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLA  135 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHH
Confidence            34679999999999999998874

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.47  E-value=3e-06  Score=63.39  Aligned_cols=67  Identities=15%  Similarity=0.087  Sum_probs=39.0

Q ss_pred             CCEEEEEEEcCChhhhHhh----HHh---hc-----ccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q 029437           62 GKIKFKAFDLGGHQIARRV----WKD---YY-----AKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGN  129 (193)
Q Consensus        62 ~~~~~~~~D~~G~~~~~~~----~~~---~~-----~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~n  129 (193)
                      .+..+.++||||.......    +..   ..     ..+|.+++|+|++...  +.. .....+.+..    -+.-+++|
T Consensus       153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~-~~~~~f~~~~----~~~g~IlT  225 (272)
T TIGR00064       153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NAL-EQAKVFNEAV----GLTGIILT  225 (272)
T ss_pred             CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHH-HHHHHHHhhC----CCCEEEEE
Confidence            3478999999996432211    111   11     2379999999997532  222 2223332211    13479999


Q ss_pred             CCCCCC
Q 029437          130 KIDIPY  135 (193)
Q Consensus       130 K~D~~~  135 (193)
                      |.|...
T Consensus       226 KlDe~~  231 (272)
T TIGR00064       226 KLDGTA  231 (272)
T ss_pred             ccCCCC
Confidence            999873

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.45  E-value=7e-07  Score=73.30  Aligned_cols=110  Identities=19%  Similarity=0.086  Sum_probs=76.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCc---------------cccCCCCCcc----eeEEEeCCEEEEEEEcCChhhhHhh
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERL---------------VQHQPTQYPT----SEELSIGKIKFKAFDLGGHQIARRV   80 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~---------------~~~~~t~~~~----~~~~~~~~~~~~~~D~~G~~~~~~~   80 (193)
                      --+|.++-+..-|||||+..+....-               .....+.+++    ......+++.++++|+|||..|...
T Consensus         9 irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~se   88 (887)
T KOG0467|consen    9 IRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSE   88 (887)
T ss_pred             eeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhh
Confidence            34688889999999999999864431               1122233332    2223346789999999999999988


Q ss_pred             HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437           81 WKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP  134 (193)
Q Consensus        81 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  134 (193)
                      ......-+|+.++++|+...-.- +....+++.+.    .+..+++|+||+|..
T Consensus        89 vssas~l~d~alvlvdvvegv~~-qt~~vlrq~~~----~~~~~~lvinkidrl  137 (887)
T KOG0467|consen   89 VSSASRLSDGALVLVDVVEGVCS-QTYAVLRQAWI----EGLKPILVINKIDRL  137 (887)
T ss_pred             hhhhhhhcCCcEEEEeeccccch-hHHHHHHHHHH----ccCceEEEEehhhhH
Confidence            88887889999999999775332 22333443333    266679999999944

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=1e-05  Score=66.05  Aligned_cols=114  Identities=18%  Similarity=0.215  Sum_probs=69.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc--CCCC-------------------C----------------------
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH--QPTQ-------------------Y----------------------   53 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~t~-------------------~----------------------   53 (193)
                      .+...||++.|..++||||++|++...+..+.  .++.                   +                      
T Consensus       106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~  185 (749)
T KOG0448|consen  106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD  185 (749)
T ss_pred             hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence            35667999999999999999999965543221  1100                   0                      


Q ss_pred             ---cceeEEEeCC-------EEEEEEEcCChh---hhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCC
Q 029437           54 ---PTSEELSIGK-------IKFKAFDLGGHQ---IARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA  120 (193)
Q Consensus        54 ---~~~~~~~~~~-------~~~~~~D~~G~~---~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~  120 (193)
                         .....+-+++       -++.++|.||..   ...+....+...+|++++|.++.+.-+..+ .+++...-.    .
T Consensus       186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~----~  260 (749)
T KOG0448|consen  186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE----E  260 (749)
T ss_pred             cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc----c
Confidence               0011111211       257899999954   334555666778999999999977643222 233333322    2


Q ss_pred             CCcEEEEEeCCCCCC
Q 029437          121 NVPFLVLGNKIDIPY  135 (193)
Q Consensus       121 ~~pviiv~nK~D~~~  135 (193)
                      +..+.++.||-|...
T Consensus       261 KpniFIlnnkwDasa  275 (749)
T KOG0448|consen  261 KPNIFILNNKWDASA  275 (749)
T ss_pred             CCcEEEEechhhhhc
Confidence            445567777779864

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.39  E-value=6.1e-07  Score=69.77  Aligned_cols=56  Identities=20%  Similarity=0.294  Sum_probs=35.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCc-----cccCCCCCcceeEEEeC-CEEEEEEEcCChhh
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERL-----VQHQPTQYPTSEELSIG-KIKFKAFDLGGHQI   76 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~-----~~~~~t~~~~~~~~~~~-~~~~~~~D~~G~~~   76 (193)
                      .+++++|.+|+|||||+|++.....     ....+.++.+.....+. +..+.++||||...
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~  216 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIIN  216 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCC
Confidence            5899999999999999999987542     11112222222222221 12457999999653

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.36  E-value=2.6e-06  Score=66.17  Aligned_cols=84  Identities=18%  Similarity=0.137  Sum_probs=56.7

Q ss_pred             cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCC
Q 029437           85 YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSN  164 (193)
Q Consensus        85 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (193)
                      ..++|.+++|+++..+-+...+..++.....    .++|.++|+||+|+.+.  .++..+.+....              
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~--~~~~~~~~~~~~--------------  169 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCED--AEEKIAEVEALA--------------  169 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCC--HHHHHHHHHHhC--------------
Confidence            5789999999999644333444454444432    47888999999999753  222211111101              


Q ss_pred             CcceEEEEeeeecCCChhhHHHhhh
Q 029437          165 VRPLEVFMCSIVRKMGYGDGFKWLS  189 (193)
Q Consensus       165 ~~~~~~~~~Sa~~g~gv~el~~~i~  189 (193)
                       ...+++.+|+++|.|++++.++|.
T Consensus       170 -~g~~Vi~vSa~~g~gl~~L~~~L~  193 (356)
T PRK01889        170 -PGVPVLAVSALDGEGLDVLAAWLS  193 (356)
T ss_pred             -CCCcEEEEECCCCccHHHHHHHhh
Confidence             235789999999999999999885

>PRK12289 GTPase RsgA; Reviewed

Probab=98.34  E-value=9.5e-07  Score=68.23  Aligned_cols=54  Identities=15%  Similarity=0.076  Sum_probs=33.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccCCCCC---------cceeEEEeCCEEEEEEEcCChhh
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQY---------PTSEELSIGKIKFKAFDLGGHQI   76 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~---------~~~~~~~~~~~~~~~~D~~G~~~   76 (193)
                      .++|+|++|+|||||+|+|............+         ....-+...+. ..++||||...
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g-~~liDTPG~~~  236 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG-GLLADTPGFNQ  236 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC-cEEEeCCCccc
Confidence            48999999999999999998765433222111         11122223221 26899999543

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.33  E-value=1.4e-06  Score=59.21  Aligned_cols=58  Identities=16%  Similarity=0.176  Sum_probs=36.2

Q ss_pred             CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCC
Q 029437           63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKID  132 (193)
Q Consensus        63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D  132 (193)
                      +..+.++||+|.....   ...+..+|.+++|....-.+.+.-+.-   ..+      ...-++++||.|
T Consensus        91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k~---~~~------~~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIKA---GIM------EIADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhhh---hHh------hhcCEEEEeCCC
Confidence            4678999998854222   236678899999988863333322211   121      222389999998

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PRK13796 GTPase YqeH; Provisional

Probab=98.31  E-value=5.3e-06  Score=64.69  Aligned_cols=99  Identities=20%  Similarity=0.294  Sum_probs=58.1

Q ss_pred             hhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC-CHHHHHHhhCCCccccC
Q 029437           76 IARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA-SEEELRYHLGLSNFTTG  154 (193)
Q Consensus        76 ~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~  154 (193)
                      .+.......-.....|++|+|+.|...  .....+..+.     .+.|+++|+||+|+.+.. ..+++.+...... . .
T Consensus        58 ~~~~~l~~i~~~~~lIv~VVD~~D~~~--s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~-k-~  128 (365)
T PRK13796         58 DFLKLLNGIGDSDALVVNVVDIFDFNG--SWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEA-K-E  128 (365)
T ss_pred             HHHHHHHhhcccCcEEEEEEECccCCC--chhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHH-H-h
Confidence            455554444333449999999987532  2222333332     267999999999997432 2233222111000 0 0


Q ss_pred             CCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          155 KGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                              ......+++.+||++|.|++++++.|.+.
T Consensus       129 --------~g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        129 --------LGLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             --------cCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence                    00011358899999999999999998654

>PRK12288 GTPase RsgA; Reviewed

Probab=98.31  E-value=8.7e-07  Score=68.38  Aligned_cols=56  Identities=16%  Similarity=0.124  Sum_probs=34.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccCCC-----CCcc----eeEEEeCCEEEEEEEcCChhhhH
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPT-----QYPT----SEELSIGKIKFKAFDLGGHQIAR   78 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t-----~~~~----~~~~~~~~~~~~~~D~~G~~~~~   78 (193)
                      .++++|.||+|||||+|+|.+.........     .+..    ..-+.+.. ...++||||...+.
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~-~~~liDTPGir~~~  271 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH-GGDLIDSPGVREFG  271 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC-CCEEEECCCCCccc
Confidence            478999999999999999997764432211     1111    11122221 12499999976543

>PRK13796 GTPase YqeH; Provisional

Probab=98.31  E-value=1.6e-06  Score=67.56  Aligned_cols=55  Identities=20%  Similarity=0.309  Sum_probs=34.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC-----ccccCCCCCccee--EEEeCCEEEEEEEcCChh
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER-----LVQHQPTQYPTSE--ELSIGKIKFKAFDLGGHQ   75 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~-----~~~~~~t~~~~~~--~~~~~~~~~~~~D~~G~~   75 (193)
                      ..++.++|.+|+|||||+|++....     .....+.++.+..  .+..++ ...++||||..
T Consensus       160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~-~~~l~DTPGi~  221 (365)
T PRK13796        160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD-GSFLYDTPGII  221 (365)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC-CcEEEECCCcc
Confidence            3579999999999999999998543     1111112222222  222222 24799999964

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.31  E-value=3.3e-06  Score=66.60  Aligned_cols=65  Identities=12%  Similarity=0.106  Sum_probs=37.9

Q ss_pred             CEEEEEEEcCChhhhHh-h---HHhh--cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437           63 KIKFKAFDLGGHQIARR-V---WKDY--YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP  134 (193)
Q Consensus        63 ~~~~~~~D~~G~~~~~~-~---~~~~--~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  134 (193)
                      ++.+.++||+|...... +   +...  ...++.+++|+|+.-....   ......+-+.    -.+--+++||.|..
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~----~~~~g~IlTKlD~~  252 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDS----VDVGSVIITKLDGH  252 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhc----cCCcEEEEECccCC
Confidence            46899999999543221 1   1111  2356889999998654322   2222222111    23557899999986

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.28  E-value=2.3e-05  Score=59.88  Aligned_cols=120  Identities=23%  Similarity=0.170  Sum_probs=64.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccc--------------cC-C------------CCCcceeEEE-------------e
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQ--------------HQ-P------------TQYPTSEELS-------------I   61 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~--------------~~-~------------t~~~~~~~~~-------------~   61 (193)
                      ..+|.|.-|||||||++.+.......              .. .            +.|.-..+++             -
T Consensus         3 VtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~   82 (323)
T COG0523           3 VTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRR   82 (323)
T ss_pred             EEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhcc
Confidence            46889999999999999997554210              00 0            0011111100             1


Q ss_pred             CCEEEEEEEcCChhhhHhhHHh-----hc---ccCCEEEEEEECCChhh-HHHHHHHHHHHHcCCCCCCCcEEEEEeCCC
Q 029437           62 GKIKFKAFDLGGHQIARRVWKD-----YY---AKVDAVVYLVDAYDKER-FAESKKELDALLSDEALANVPFLVLGNKID  132 (193)
Q Consensus        62 ~~~~~~~~D~~G~~~~~~~~~~-----~~---~~~d~vl~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~pviiv~nK~D  132 (193)
                      ++....++.+.|.-.-......     .+   -..|.++-|+|+.+-.. .....+....-+..   .+   ++++||+|
T Consensus        83 ~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~---AD---~ivlNK~D  156 (323)
T COG0523          83 DRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF---AD---VIVLNKTD  156 (323)
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh---Cc---EEEEeccc
Confidence            1244667777774222222211     12   24688999999976533 22223333333222   12   89999999


Q ss_pred             CCCCCCHHHHHHhhC
Q 029437          133 IPYAASEEELRYHLG  147 (193)
Q Consensus       133 ~~~~~~~~~~~~~~~  147 (193)
                      +.++...+.+...+.
T Consensus       157 lv~~~~l~~l~~~l~  171 (323)
T COG0523         157 LVDAEELEALEARLR  171 (323)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            986554444444443

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.27  E-value=1.3e-06  Score=64.42  Aligned_cols=53  Identities=19%  Similarity=0.086  Sum_probs=34.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccC-----------CCCCcceeEEEeCCEEEEEEEcCChhhh
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQHQ-----------PTQYPTSEELSIGKIKFKAFDLGGHQIA   77 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~-----------~t~~~~~~~~~~~~~~~~~~D~~G~~~~   77 (193)
                      ..++++|++|+|||||+|++.+.......           .|......  ...+  -.++||||...+
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~--~l~~--~~liDtPG~~~~  184 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELF--HFHG--GLIADTPGFNEF  184 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEE--EcCC--cEEEeCCCcccc
Confidence            47899999999999999999876533211           12222222  2222  279999997543

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.25  E-value=6.5e-06  Score=63.91  Aligned_cols=117  Identities=12%  Similarity=0.045  Sum_probs=62.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcccc---------CCCC---------------CcceeE-----------EEeCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQH---------QPTQ---------------YPTSEE-----------LSIGK   63 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---------~~t~---------------~~~~~~-----------~~~~~   63 (193)
                      +.-.++++||+|+||||++..|...-....         ..+.               +.....           ..+.+
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~  215 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN  215 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence            345899999999999999998864311000         0010               101111           11235


Q ss_pred             EEEEEEEcCChhhhH----hhHHhh--cccCCEEEEEEECCCh-hhHHHHHHHHHHHHcCCCCC-CCcEEEEEeCCCCCC
Q 029437           64 IKFKAFDLGGHQIAR----RVWKDY--YAKVDAVVYLVDAYDK-ERFAESKKELDALLSDEALA-NVPFLVLGNKIDIPY  135 (193)
Q Consensus        64 ~~~~~~D~~G~~~~~----~~~~~~--~~~~d~vl~v~d~~~~-~~~~~~~~~~~~~~~~~~~~-~~pviiv~nK~D~~~  135 (193)
                      ..+.++||+|.....    ......  .....-.++|++++.. +.+.++...+.......... .-+-=+++||.|...
T Consensus       216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~  295 (374)
T PRK14722        216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS  295 (374)
T ss_pred             CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence            688999999955322    222221  1234567899998764 33444444344332111100 012357789999863

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=98.23  E-value=1.6e-05  Score=60.80  Aligned_cols=23  Identities=48%  Similarity=0.592  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .-.+|.|.-|||||||++++...
T Consensus         5 pv~iltGFLGaGKTTll~~ll~~   27 (318)
T PRK11537          5 AVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_pred             CEEEEEECCCCCHHHHHHHHHhc
Confidence            35788999999999999999754

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.21  E-value=2.4e-05  Score=55.75  Aligned_cols=66  Identities=14%  Similarity=0.078  Sum_probs=37.2

Q ss_pred             CEEEEEEEcCChhhhH----hhHHhhc--ccCCEEEEEEECCChhh-HHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437           63 KIKFKAFDLGGHQIAR----RVWKDYY--AKVDAVVYLVDAYDKER-FAESKKELDALLSDEALANVPFLVLGNKIDIPY  135 (193)
Q Consensus        63 ~~~~~~~D~~G~~~~~----~~~~~~~--~~~d~vl~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~  135 (193)
                      +.++.++||+|.....    ..+..++  ...+-+++|++++.... +..+......+       + +-=+++||.|...
T Consensus        83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~-------~-~~~lIlTKlDet~  154 (196)
T PF00448_consen   83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF-------G-IDGLILTKLDETA  154 (196)
T ss_dssp             TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS-------S-TCEEEEESTTSSS
T ss_pred             CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc-------c-CceEEEEeecCCC
Confidence            4679999999943322    1111111  25789999999976532 33332222222       1 2257799999864


Q ss_pred             C
Q 029437          136 A  136 (193)
Q Consensus       136 ~  136 (193)
                      .
T Consensus       155 ~  155 (196)
T PF00448_consen  155 R  155 (196)
T ss_dssp             T
T ss_pred             C
Confidence            3

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.20  E-value=5.7e-06  Score=72.12  Aligned_cols=113  Identities=18%  Similarity=0.202  Sum_probs=65.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcccc-----CCCCCcceeEEE-eCCEEEEEEEcCChh--------hhHhhHHhh---
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQH-----QPTQYPTSEELS-IGKIKFKAFDLGGHQ--------IARRVWKDY---   84 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~~~D~~G~~--------~~~~~~~~~---   84 (193)
                      =-+|+|++|+||||++..- +..|+-.     ....+..+..++ +-.-.-.++||.|-.        .....+..+   
T Consensus       127 Wy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l  205 (1188)
T COG3523         127 WYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL  205 (1188)
T ss_pred             ceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence            3689999999999999753 2222211     011111122222 223356788999821        122333322   


Q ss_pred             ------cccCCEEEEEEECCCh------hh---HHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437           85 ------YAKVDAVVYLVDAYDK------ER---FAESKKELDALLSDEALANVPFLVLGNKIDIPYA  136 (193)
Q Consensus        85 ------~~~~d~vl~v~d~~~~------~~---~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  136 (193)
                            .+..++|++.+|+++-      +.   ...++.-+.++-...+ -..||++++||.|+.+.
T Consensus       206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~-~~~PVYl~lTk~Dll~G  271 (1188)
T COG3523         206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH-ARLPVYLVLTKADLLPG  271 (1188)
T ss_pred             HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc-cCCceEEEEeccccccc
Confidence                  3478999999998641      11   2233344444433322 48999999999999853

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=98.17  E-value=3.5e-06  Score=59.16  Aligned_cols=68  Identities=15%  Similarity=0.143  Sum_probs=40.6

Q ss_pred             EEEEEEEcCChhhhHhh--HHhh---cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC
Q 029437           64 IKFKAFDLGGHQIARRV--WKDY---YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA  137 (193)
Q Consensus        64 ~~~~~~D~~G~~~~~~~--~~~~---~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~  137 (193)
                      ....++.+.|...-..+  ....   .-..+.++.|+|+.+..........+.+.+....      ++++||+|+.+..
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~~~  157 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVSDE  157 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHHHH
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCChh
Confidence            45677788884333332  1111   1256899999999775444455555555554432      9999999998543

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.14  E-value=3.5e-06  Score=66.59  Aligned_cols=58  Identities=21%  Similarity=0.218  Sum_probs=45.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEe-CCEEEEEEEcCCh
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSI-GKIKFKAFDLGGH   74 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~G~   74 (193)
                      ++..+.|+++|-||+||||+||+|.+.+-+....|+|-+.+--.+ -.-.+.+.|+||.
T Consensus       311 ~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPGL  369 (562)
T KOG1424|consen  311 YKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSPSVCLCDCPGL  369 (562)
T ss_pred             CCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCCCceecCCCCc
Confidence            344699999999999999999999999988877777765543322 2236789999993

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.14  E-value=8.6e-05  Score=51.77  Aligned_cols=65  Identities=20%  Similarity=0.149  Sum_probs=38.2

Q ss_pred             CEEEEEEEcCChhhhH----hhHHhh--cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437           63 KIKFKAFDLGGHQIAR----RVWKDY--YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP  134 (193)
Q Consensus        63 ~~~~~~~D~~G~~~~~----~~~~~~--~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  134 (193)
                      +..+.++|++|.....    ......  ....+.+++|+|......   ..+....+.+..   + ..-++.||.|..
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~---~-~~~viltk~D~~  152 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL---G-ITGVILTKLDGD  152 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC---C-CCEEEEECCcCC
Confidence            4568999999974321    111111  124899999999965432   223334443221   2 256778999987

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.13  E-value=0.00012  Score=51.25  Aligned_cols=87  Identities=18%  Similarity=0.218  Sum_probs=47.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEE----EcCC-hhhhHhhHHhhcccCCEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAF----DLGG-HQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~----D~~G-~~~~~~~~~~~~~~~d~vl   92 (193)
                      ...-.++++|++|||||||++.+.+...        +..+.+.+.+..+...    +..| +.+--........+.+.++
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--------p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lll   94 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQLI--------PNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYL   94 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCC--------CCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence            3445799999999999999999987542        1223333333222111    1333 3222333344455555444


Q ss_pred             EEEEC----CChhhHHHHHHHHHHHH
Q 029437           93 YLVDA----YDKERFAESKKELDALL  114 (193)
Q Consensus        93 ~v~d~----~~~~~~~~~~~~~~~~~  114 (193)
                        +|-    -|+.+...+.+++..+.
T Consensus        95 --LDEPts~LD~~~~~~l~~~l~~~~  118 (177)
T cd03222          95 --FDEPSAYLDIEQRLNAARAIRRLS  118 (177)
T ss_pred             --EECCcccCCHHHHHHHHHHHHHHH
Confidence              454    34555555556666553

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.11  E-value=7.2e-06  Score=61.92  Aligned_cols=56  Identities=18%  Similarity=0.166  Sum_probs=35.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccCC---C--CC--cc--eeEEEeCCEEEEEEEcCChhhh
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQHQP---T--QY--PT--SEELSIGKIKFKAFDLGGHQIA   77 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~---t--~~--~~--~~~~~~~~~~~~~~D~~G~~~~   77 (193)
                      ..++++|++|+|||||+|.+.+........   +  .+  .+  ...+.... ...++||||...+
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCcc
Confidence            579999999999999999998765432111   0  11  11  11222221 2268999998654

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.10  E-value=1.7e-05  Score=58.31  Aligned_cols=113  Identities=15%  Similarity=0.185  Sum_probs=70.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-----CCCCCcceeEEE--eCC--EEEEEEEcCCh-------hh-----
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH-----QPTQYPTSEELS--IGK--IKFKAFDLGGH-------QI-----   76 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~--~~~--~~~~~~D~~G~-------~~-----   76 (193)
                      --.++|+-+|..|.|||||+..+.+..|...     .|++.....+.+  -++  .++++.||.|-       .+     
T Consensus        40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV  119 (406)
T KOG3859|consen   40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV  119 (406)
T ss_pred             CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence            3568999999999999999999998876542     334433333332  233  57899999981       11     


Q ss_pred             ------hHhhHHhhc-----------ccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437           77 ------ARRVWKDYY-----------AKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY  135 (193)
Q Consensus        77 ------~~~~~~~~~-----------~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~  135 (193)
                            +...+++.+           .+.|+++|.+..+.- ++..++-....-+.    .++.+|-++-|.|...
T Consensus       120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvtmk~Ld----skVNIIPvIAKaDtis  190 (406)
T KOG3859|consen  120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVTMKKLD----SKVNIIPVIAKADTIS  190 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHHHHHHh----hhhhhHHHHHHhhhhh
Confidence                  111111111           367888888877543 34444433333333    3677788888999763

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.07  E-value=7e-06  Score=64.71  Aligned_cols=24  Identities=25%  Similarity=0.286  Sum_probs=20.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..-+++++|++|+||||++..|.+
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~  213 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAA  213 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            445899999999999999997754

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=98.07  E-value=1.3e-05  Score=56.57  Aligned_cols=125  Identities=18%  Similarity=0.244  Sum_probs=64.8

Q ss_pred             EEEEEEEcCChhhh-------HhhHHhhcc--cCCEEEEEEECC---Chhh-HHHHHHHHHHHHcCCCCCCCcEEEEEeC
Q 029437           64 IKFKAFDLGGHQIA-------RRVWKDYYA--KVDAVVYLVDAY---DKER-FAESKKELDALLSDEALANVPFLVLGNK  130 (193)
Q Consensus        64 ~~~~~~D~~G~~~~-------~~~~~~~~~--~~d~vl~v~d~~---~~~~-~~~~~~~~~~~~~~~~~~~~pviiv~nK  130 (193)
                      -.+-++|.|||-..       .....+.-+  ---+++|++|+.   +... +.....-+.....    ..+|-|=+.+|
T Consensus        98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvlsK  173 (273)
T KOG1534|consen   98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLSK  173 (273)
T ss_pred             CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhhH
Confidence            46889999997542       222222211  123667777762   2221 2222233333332    38899999999


Q ss_pred             CCCCCCCCHHHHHHhhCCCcccc-CCCccccCC------------C--CCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          131 IDIPYAASEEELRYHLGLSNFTT-GKGKVNLAD------------S--NVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       131 ~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------------~--~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +|+.......++..-++.....- ..+..+...            .  ...-+++++.-....+.++.++..|..++
T Consensus       174 MDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai  250 (273)
T KOG1534|consen  174 MDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI  250 (273)
T ss_pred             HHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence            99986655555555444322110 000000000            0  00235677777777777777777766543

>PRK00098 GTPase RsgA; Reviewed

Probab=98.04  E-value=1.1e-05  Score=61.18  Aligned_cols=25  Identities=28%  Similarity=0.385  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERL   45 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~   45 (193)
                      ..++++|++|+|||||+|++.+...
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~~  189 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDLE  189 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcC
Confidence            4689999999999999999987653

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.03  E-value=9.2e-06  Score=60.73  Aligned_cols=23  Identities=35%  Similarity=0.505  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ..+++|.+|+|||||+|+|....
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~  188 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPEL  188 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchh
Confidence            68889999999999999998643

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.99  E-value=2e-05  Score=61.41  Aligned_cols=123  Identities=13%  Similarity=0.033  Sum_probs=64.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc--------ccCC--------------CCCcceeEE-------------E-eCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLV--------QHQP--------------TQYPTSEEL-------------S-IGK   63 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~--------~~~~--------------t~~~~~~~~-------------~-~~~   63 (193)
                      .-.|+++|++||||||++..|...-..        ...+              ..+......             . ..+
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~  320 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR  320 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence            358999999999999999988521100        0000              000000000             0 013


Q ss_pred             EEEEEEEcCChhhhH----hhHHhhc--ccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-
Q 029437           64 IKFKAFDLGGHQIAR----RVWKDYY--AKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-  136 (193)
Q Consensus        64 ~~~~~~D~~G~~~~~----~~~~~~~--~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-  136 (193)
                      .++.++||+|.....    ..+...+  ...+.+++|+|++-..  +.+.+....+- .    -..-=+++||.|.... 
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~-~----~~idglI~TKLDET~k~  393 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFK-D----IHIDGIVFTKFDETASS  393 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhc-C----CCCCEEEEEcccCCCCc
Confidence            588999999953321    1112222  2457889999985432  22333333331 1    1123688999998742 


Q ss_pred             CCHHHHHHhhCCC
Q 029437          137 ASEEELRYHLGLS  149 (193)
Q Consensus       137 ~~~~~~~~~~~~~  149 (193)
                      ...-.+....+.+
T Consensus       394 G~iLni~~~~~lP  406 (436)
T PRK11889        394 GELLKIPAVSSAP  406 (436)
T ss_pred             cHHHHHHHHHCcC
Confidence            2333444444433

>PRK04195 replication factor C large subunit; Provisional

Probab=97.99  E-value=4.3e-05  Score=61.94  Aligned_cols=38  Identities=24%  Similarity=0.287  Sum_probs=26.3

Q ss_pred             HHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437            6 WFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .++.|+...........+++.||||+||||+++.+...
T Consensus        25 ~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e   62 (482)
T PRK04195         25 QLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND   62 (482)
T ss_pred             HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            34444433223333567999999999999999999764

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.98  E-value=2.2e-05  Score=51.95  Aligned_cols=95  Identities=19%  Similarity=0.232  Sum_probs=52.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCC------------------------hhhh
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGG------------------------HQIA   77 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G------------------------~~~~   77 (193)
                      -++|.|++|+|||++++++............          ...+..++.+.                        ....
T Consensus         6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l   75 (131)
T PF13401_consen    6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKN----------HPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDEL   75 (131)
T ss_dssp             -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC----------CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHH
T ss_pred             ccEEEcCCCCCHHHHHHHHHHHhHHhhhccC----------CCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHH
Confidence            5889999999999999999764322100000          11111222211                        1122


Q ss_pred             HhhHHhhcccCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCcEEEEEeC
Q 029437           78 RRVWKDYYAKVDAVVYLVDAYDKE-RFAESKKELDALLSDEALANVPFLVLGNK  130 (193)
Q Consensus        78 ~~~~~~~~~~~d~vl~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK  130 (193)
                      .......+......++++|-.+.- + ....+.+..+.+   ..+++++++++-
T Consensus        76 ~~~~~~~l~~~~~~~lviDe~~~l~~-~~~l~~l~~l~~---~~~~~vvl~G~~  125 (131)
T PF13401_consen   76 RSLLIDALDRRRVVLLVIDEADHLFS-DEFLEFLRSLLN---ESNIKVVLVGTP  125 (131)
T ss_dssp             HHHHHHHHHHCTEEEEEEETTHHHHT-HHHHHHHHHHTC---SCBEEEEEEESS
T ss_pred             HHHHHHHHHhcCCeEEEEeChHhcCC-HHHHHHHHHHHh---CCCCeEEEEECh
Confidence            233333344555689999986653 2 334444455544   568889998875

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.97  E-value=2.5e-05  Score=53.51  Aligned_cols=52  Identities=23%  Similarity=0.185  Sum_probs=34.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhH
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW   81 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~   81 (193)
                      ..-.|+++||+|||||||++.+..-.        .+..+.+.+++-.++-   .+.+.++...
T Consensus        28 ~Ge~iaitGPSG~GKStllk~va~Li--------sp~~G~l~f~Ge~vs~---~~pea~Rq~V   79 (223)
T COG4619          28 AGEFIAITGPSGCGKSTLLKIVASLI--------SPTSGTLLFEGEDVST---LKPEAYRQQV   79 (223)
T ss_pred             CCceEEEeCCCCccHHHHHHHHHhcc--------CCCCceEEEcCccccc---cChHHHHHHH
Confidence            44579999999999999999988643        4455666666644433   3444454433

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.95  E-value=7e-05  Score=57.91  Aligned_cols=22  Identities=36%  Similarity=0.475  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      -.+|.|.-|||||||++.+...
T Consensus         6 v~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         6 VTIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc
Confidence            4788999999999999999753

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.95  E-value=3.5e-05  Score=59.83  Aligned_cols=109  Identities=17%  Similarity=0.206  Sum_probs=61.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC-----CCCc-----------------------------ceeEEEeCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLV-QHQP-----TQYP-----------------------------TSEELSIGK   63 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~-----t~~~-----------------------------~~~~~~~~~   63 (193)
                      +.-.|+++||.|+||||-+..|...-.. ....     |.+.                             ...--.+.+
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~  281 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD  281 (407)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence            3567999999999999988776433220 0001     1110                             000012225


Q ss_pred             EEEEEEEcCChhhhH----hhHHhhcc--cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcE-EEEEeCCCCCC
Q 029437           64 IKFKAFDLGGHQIAR----RVWKDYYA--KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPF-LVLGNKIDIPY  135 (193)
Q Consensus        64 ~~~~~~D~~G~~~~~----~~~~~~~~--~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pv-iiv~nK~D~~~  135 (193)
                      .++.++||.|.....    ..+..++.  ...-+-+|++++..  ...+.+.+..+      ...|+ =+++||.|...
T Consensus       282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f------~~~~i~~~I~TKlDET~  352 (407)
T COG1419         282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQF------SLFPIDGLIFTKLDETT  352 (407)
T ss_pred             CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHh------ccCCcceeEEEcccccC
Confidence            689999999965443    23333333  23456778888654  23444444444      12333 47899999874

>PRK13695 putative NTPase; Provisional

Probab=97.95  E-value=0.00044  Score=48.30  Aligned_cols=21  Identities=38%  Similarity=0.407  Sum_probs=18.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHh
Q 029437           21 AKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~   41 (193)
                      ++|+++|++|+|||||+..+.
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~   21 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIA   21 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999864

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.95  E-value=0.00012  Score=58.22  Aligned_cols=66  Identities=15%  Similarity=0.076  Sum_probs=37.4

Q ss_pred             CEEEEEEEcCChhhhH----hhHHhhcc---cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437           63 KIKFKAFDLGGHQIAR----RVWKDYYA---KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY  135 (193)
Q Consensus        63 ~~~~~~~D~~G~~~~~----~~~~~~~~---~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~  135 (193)
                      +.++.++||+|.....    ..+...+.   ....+.+|++++-.  ...+.+.+..+ ..   .+ +--+++||.|...
T Consensus       299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f-~~---~~-~~~vI~TKlDet~  371 (424)
T PRK05703        299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHF-SR---LP-LDGLIFTKLDETS  371 (424)
T ss_pred             CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHh-CC---CC-CCEEEEecccccc
Confidence            4689999999964331    22223333   33577888888544  22333333333 11   11 2268899999863

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.94  E-value=3.4e-05  Score=62.23  Aligned_cols=110  Identities=19%  Similarity=0.188  Sum_probs=59.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC--------Cc--cccCC--------------CCCcceeEE-----------EeCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDE--------RL--VQHQP--------------TQYPTSEEL-----------SIGK   63 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~--------~~--~~~~~--------------t~~~~~~~~-----------~~~~   63 (193)
                      ..-.|+|+|++|+||||++..|...        ..  ....+              ..+......           ...+
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~  428 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD  428 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence            4568999999999999999887532        10  00000              000000100           1124


Q ss_pred             EEEEEEEcCChhhhHhh----HHhhc-ccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437           64 IKFKAFDLGGHQIARRV----WKDYY-AKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY  135 (193)
Q Consensus        64 ~~~~~~D~~G~~~~~~~----~~~~~-~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~  135 (193)
                      ..+.++||+|.......    +.... ......++|++....  ...+.+.+..+-.     ..+.-+|+||.|...
T Consensus       429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~-----~~~~gvILTKlDEt~  498 (559)
T PRK12727        429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH-----AKPQGVVLTKLDETG  498 (559)
T ss_pred             CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence            67999999995432211    11110 112356777777543  3334444444321     235679999999863

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=97.94  E-value=0.00054  Score=53.71  Aligned_cols=36  Identities=19%  Similarity=0.303  Sum_probs=28.0

Q ss_pred             hHHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHh
Q 029437            3 LLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~   41 (193)
                      =.+-|++..++.+   -.+=|+|+||..+|||||++++.
T Consensus         3 ~~~iykDIa~RT~---GdIYiGVVGPVRTGKSTFIKRFM   38 (492)
T PF09547_consen    3 NFDIYKDIAERTG---GDIYIGVVGPVRTGKSTFIKRFM   38 (492)
T ss_pred             chhHHHHHHHhcC---CceEEEeecCcccCchhHHHHHH
Confidence            3455666665554   44779999999999999999984

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.92  E-value=0.00019  Score=44.58  Aligned_cols=97  Identities=15%  Similarity=0.036  Sum_probs=56.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhh-HHhhcccCCEEEEEEECCChh
Q 029437           23 ILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRV-WKDYYAKVDAVVYLVDAYDKE  101 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-~~~~~~~~d~vl~v~d~~~~~  101 (193)
                      +++.|.+|+||||+...+...--.     .+.....++    .+.++|+++....... .......+|.++++++.... 
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~-   71 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL-   71 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh-
Confidence            678899999999999887543211     111222222    7899999987543321 13445678999999988544 


Q ss_pred             hHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q 029437          102 RFAESKKELDALLSDEALANVPFLVLGN  129 (193)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~pviiv~n  129 (193)
                      +....................+..++.|
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~vv~N   99 (99)
T cd01983          72 AVLGARRLTEVVLELAIEGLRPVGVVVN   99 (99)
T ss_pred             hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence            3444444433333333334555555544

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.91  E-value=0.00041  Score=46.28  Aligned_cols=26  Identities=31%  Similarity=0.465  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ....+++.|++|+|||++++.+...-
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            34579999999999999999987643

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.89  E-value=5.3e-05  Score=60.20  Aligned_cols=121  Identities=17%  Similarity=0.149  Sum_probs=77.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC------------cc-------ccCCCCCcceeE----------------EEeCCEEE
Q 029437           22 KILFLGLDNAGKTTLLHMLKDER------------LV-------QHQPTQYPTSEE----------------LSIGKIKF   66 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~------------~~-------~~~~t~~~~~~~----------------~~~~~~~~   66 (193)
                      ++-++-+..-|||||..+|....            |.       +...|+..+...                -+..+.-+
T Consensus        21 NmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLi  100 (842)
T KOG0469|consen   21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLI  100 (842)
T ss_pred             cceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeE
Confidence            57788899999999999984321            11       011111111111                11224668


Q ss_pred             EEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC---CCCCHHHHH
Q 029437           67 KAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP---YAASEEELR  143 (193)
Q Consensus        67 ~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~---~~~~~~~~~  143 (193)
                      +++|.||+..+.+.....++-.|+.+.|+|..+.-..+ ....+.+.+.+    ++.-+++.||+|..   -+.+.+++-
T Consensus       101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQ-TETVLrQA~~E----RIkPvlv~NK~DRAlLELq~~~EeLy  175 (842)
T KOG0469|consen  101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ-TETVLRQAIAE----RIKPVLVMNKMDRALLELQLSQEELY  175 (842)
T ss_pred             EeccCCCcccchhhhhheeEeccCcEEEEEccCceEec-hHHHHHHHHHh----hccceEEeehhhHHHHhhcCCHHHHH
Confidence            99999999999998888899999999999998763322 22333333333    44457889999976   345566654


Q ss_pred             HhhC
Q 029437          144 YHLG  147 (193)
Q Consensus       144 ~~~~  147 (193)
                      +.+.
T Consensus       176 qtf~  179 (842)
T KOG0469|consen  176 QTFQ  179 (842)
T ss_pred             HHHH
Confidence            4443

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.89  E-value=0.00024  Score=53.41  Aligned_cols=115  Identities=15%  Similarity=0.222  Sum_probs=68.3

Q ss_pred             hHHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhh-----
Q 029437            3 LLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA-----   77 (193)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~-----   77 (193)
                      +++-++.++...+ .....+++++|++|-|||++++++...-....    +..     .....+....+|.....     
T Consensus        45 ~L~~L~~Ll~~P~-~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~----d~~-----~~~~PVv~vq~P~~p~~~~~Y~  114 (302)
T PF05621_consen   45 ALDRLEELLEYPK-RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQS----DED-----AERIPVVYVQMPPEPDERRFYS  114 (302)
T ss_pred             HHHHHHHHHhCCc-ccCCCceEEecCCCCcHHHHHHHHHHHCCCCC----CCC-----CccccEEEEecCCCCChHHHHH
Confidence            4666777777655 33446799999999999999999986442211    111     11346666666652111     


Q ss_pred             -------------------HhhHHhhcccCCEEEEEEECCCh---hhHH---HHHHHHHHHHcCCCCCCCcEEEEEeC
Q 029437           78 -------------------RRVWKDYYAKVDAVVYLVDAYDK---ERFA---ESKKELDALLSDEALANVPFLVLGNK  130 (193)
Q Consensus        78 -------------------~~~~~~~~~~~d~vl~v~d~~~~---~~~~---~~~~~~~~~~~~~~~~~~pviiv~nK  130 (193)
                                         .......++....=++++|--+.   .+..   .....++.+   .+..++|+|.++++
T Consensus       115 ~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L---~NeL~ipiV~vGt~  189 (302)
T PF05621_consen  115 AILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFL---GNELQIPIVGVGTR  189 (302)
T ss_pred             HHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHH---hhccCCCeEEeccH
Confidence                               12223445667777889986432   1222   233333344   23368999999974

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PHA02774 E1; Provisional

Probab=97.89  E-value=0.00043  Score=56.46  Aligned_cols=41  Identities=15%  Similarity=0.188  Sum_probs=33.5

Q ss_pred             chHHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437            2 FLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .++.|+..+..+.+...+.-.+++.||||+|||.|..++..
T Consensus       416 ~~~~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~  456 (613)
T PHA02774        416 EFISFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIK  456 (613)
T ss_pred             cHHHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHH
Confidence            35667777777777766667999999999999999999875

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.87  E-value=1.3e-05  Score=52.41  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      +|+|.|+|||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999763

...

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.86  E-value=4.1e-05  Score=57.24  Aligned_cols=71  Identities=23%  Similarity=0.285  Sum_probs=42.9

Q ss_pred             HHHHHHHHHhhCC-CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-----ccCCCCCcc---eeEEEe-CCEEEEEEEcCC
Q 029437            4 LDWFYGVLASLGL-WQKEAKILFLGLDNAGKTTLLHMLKDERLV-----QHQPTQYPT---SEELSI-GKIKFKAFDLGG   73 (193)
Q Consensus         4 ~~~~~~~~~~~~~-~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-----~~~~t~~~~---~~~~~~-~~~~~~~~D~~G   73 (193)
                      +.|+..=+.+..+ ...+.+++|+|.||+|||||+|++......     ...+..+.+   .+.+.+ ..-.+-++||||
T Consensus       126 l~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPG  205 (335)
T KOG2485|consen  126 LTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPG  205 (335)
T ss_pred             HHHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCC
Confidence            3444333333333 568899999999999999999987544322     222222221   122333 234578899999


Q ss_pred             h
Q 029437           74 H   74 (193)
Q Consensus        74 ~   74 (193)
                      .
T Consensus       206 i  206 (335)
T KOG2485|consen  206 I  206 (335)
T ss_pred             c
Confidence            4

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.86  E-value=3.2e-05  Score=55.05  Aligned_cols=26  Identities=31%  Similarity=0.510  Sum_probs=22.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      +.-.++|+||+|||||||++++.+-+
T Consensus        27 ~Gevv~iiGpSGSGKSTlLRclN~LE   52 (240)
T COG1126          27 KGEVVVIIGPSGSGKSTLLRCLNGLE   52 (240)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCc
Confidence            34578999999999999999998876

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.86  E-value=7.3e-05  Score=60.04  Aligned_cols=23  Identities=26%  Similarity=0.302  Sum_probs=19.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .-.++++|++||||||.+..|..
T Consensus       256 g~Vi~LvGpnGvGKTTTiaKLA~  278 (484)
T PRK06995        256 GGVFALMGPTGVGKTTTTAKLAA  278 (484)
T ss_pred             CcEEEEECCCCccHHHHHHHHHH
Confidence            34699999999999999988863

>PRK10867 signal recognition particle protein; Provisional

Probab=97.84  E-value=0.00018  Score=57.20  Aligned_cols=80  Identities=16%  Similarity=0.103  Sum_probs=42.3

Q ss_pred             CEEEEEEEcCChhhh----HhhHHhh--cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC-C
Q 029437           63 KIKFKAFDLGGHQIA----RRVWKDY--YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP-Y  135 (193)
Q Consensus        63 ~~~~~~~D~~G~~~~----~~~~~~~--~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~-~  135 (193)
                      ++.+.++||+|....    -......  .-..+.+++|+|+...+   ...+....+....   + ..-+++||.|.. .
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~---~-i~giIlTKlD~~~r  255 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL---G-LTGVILTKLDGDAR  255 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC---C-CCEEEEeCccCccc
Confidence            467999999994321    1111111  12567889999986542   3333333332211   1 124677999965 2


Q ss_pred             CCCHHHHHHhhCCC
Q 029437          136 AASEEELRYHLGLS  149 (193)
Q Consensus       136 ~~~~~~~~~~~~~~  149 (193)
                      ....-.+....+.+
T Consensus       256 gG~alsi~~~~~~P  269 (433)
T PRK10867        256 GGAALSIRAVTGKP  269 (433)
T ss_pred             ccHHHHHHHHHCcC
Confidence            22344455555544

>TIGR00959 ffh signal recognition particle protein

Probab=97.83  E-value=0.0004  Score=55.22  Aligned_cols=81  Identities=14%  Similarity=0.073  Sum_probs=44.2

Q ss_pred             CEEEEEEEcCChhhh----HhhHHhh--cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC-C
Q 029437           63 KIKFKAFDLGGHQIA----RRVWKDY--YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP-Y  135 (193)
Q Consensus        63 ~~~~~~~D~~G~~~~----~~~~~~~--~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~-~  135 (193)
                      +..+.++||+|....    -......  .-..+.+++|+|+....   ...+....+....   + ..=++.||.|.. .
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~-i~giIlTKlD~~~~  254 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---G-LTGVVLTKLDGDAR  254 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---C-CCEEEEeCccCccc
Confidence            467999999994322    1111111  23568899999986542   3333333332211   1 235779999965 2


Q ss_pred             CCCHHHHHHhhCCCc
Q 029437          136 AASEEELRYHLGLSN  150 (193)
Q Consensus       136 ~~~~~~~~~~~~~~~  150 (193)
                      ......+....+.+.
T Consensus       255 ~G~~lsi~~~~~~PI  269 (428)
T TIGR00959       255 GGAALSVRSVTGKPI  269 (428)
T ss_pred             ccHHHHHHHHHCcCE
Confidence            233445555555444

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.83  E-value=2.6e-05  Score=60.07  Aligned_cols=39  Identities=23%  Similarity=0.432  Sum_probs=29.5

Q ss_pred             chHHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437            2 FLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .+++|++.+..-.  ...+.-++++||||+|||||.++|..
T Consensus        62 ~lv~~l~~~a~g~--~~~r~il~L~GPPGsGKStla~~La~  100 (361)
T smart00763       62 RFVNYFKSAAQGL--EERKQILYLLGPVGGGKSSLVECLKR  100 (361)
T ss_pred             HHHHHHHHHHhcC--CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3578888888432  23334589999999999999999864

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.82  E-value=0.00028  Score=48.80  Aligned_cols=26  Identities=31%  Similarity=0.448  Sum_probs=22.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      +.-.++++|++|+|||||++.+.+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          25 RGEVHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44579999999999999999998764

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.81  E-value=7.9e-05  Score=62.74  Aligned_cols=110  Identities=14%  Similarity=0.080  Sum_probs=59.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcccc---C------CCC---------------CcceeEE-----------EeCCE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQH---Q------PTQ---------------YPTSEEL-----------SIGKI   64 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~------~t~---------------~~~~~~~-----------~~~~~   64 (193)
                      .-.|+++|+.|+||||.+..+...-....   .      .+.               +......           ...+.
T Consensus       185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~  264 (767)
T PRK14723        185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK  264 (767)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence            34689999999999999988864321000   0      000               0000000           12245


Q ss_pred             EEEEEEcCChh----hhHhhHHhh--cccCCEEEEEEECCCh-hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437           65 KFKAFDLGGHQ----IARRVWKDY--YAKVDAVVYLVDAYDK-ERFAESKKELDALLSDEALANVPFLVLGNKIDIP  134 (193)
Q Consensus        65 ~~~~~D~~G~~----~~~~~~~~~--~~~~d~vl~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  134 (193)
                      ++.++||+|-.    .........  ....+-+++|+|++.. +.+.++...+.....     --+-=+|+||.|..
T Consensus       265 D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~-----~~i~glIlTKLDEt  336 (767)
T PRK14723        265 HLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAG-----EDVDGCIITKLDEA  336 (767)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhccc-----CCCCEEEEeccCCC
Confidence            79999999932    222222221  2345778999999753 334433333332210     01235789999976

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.81  E-value=2e-05  Score=60.66  Aligned_cols=56  Identities=20%  Similarity=0.336  Sum_probs=43.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce--eEEEeCCEEEEEEEcCCh
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTS--EELSIGKIKFKAFDLGGH   74 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~G~   74 (193)
                      +..++++|+|-|++||||++|+|..+......++.+.+.  ..+..+ -.+.+.|.||.
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ld-k~i~llDsPgi  307 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLD-KKIRLLDSPGI  307 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheecc-CCceeccCCce
Confidence            577999999999999999999999888766555555543  233333 47889999994

>PRK08118 topology modulation protein; Reviewed

Probab=97.81  E-value=1.8e-05  Score=54.92  Aligned_cols=22  Identities=36%  Similarity=0.665  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      +|+|+|++|||||||...+...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999998754

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.81  E-value=2.3e-05  Score=44.65  Aligned_cols=21  Identities=33%  Similarity=0.559  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..+|+|+.|+||||++.++..
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998753

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.78  E-value=0.00024  Score=56.60  Aligned_cols=63  Identities=21%  Similarity=0.203  Sum_probs=36.4

Q ss_pred             EEEEEEEcCChhhhHh-hH---Hh--hcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCC
Q 029437           64 IKFKAFDLGGHQIARR-VW---KD--YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIP  134 (193)
Q Consensus        64 ~~~~~~D~~G~~~~~~-~~---~~--~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~  134 (193)
                      ..+.++||+|...... ++   ..  ....+|.+++|+|++...   ...+....+-.     ..+ .-+++||.|..
T Consensus       176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~-----~l~i~gvIlTKlD~~  245 (437)
T PRK00771        176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHE-----AVGIGGIIITKLDGT  245 (437)
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHh-----cCCCCEEEEecccCC
Confidence            4789999999544321 11   11  123678999999986642   22222333211     122 25778999975

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.78  E-value=0.00073  Score=45.69  Aligned_cols=26  Identities=35%  Similarity=0.551  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ..-.++|+|++|+|||||++.+.+..
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          25 PGDRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            34568999999999999999998754

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.76  E-value=2.4e-05  Score=54.83  Aligned_cols=23  Identities=43%  Similarity=0.616  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .+|+|+|+|||||||+...|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999765

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.76  E-value=4.5e-05  Score=55.06  Aligned_cols=24  Identities=29%  Similarity=0.465  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      --++|+||+|||||||++.+.+-+
T Consensus        32 e~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          32 EFVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccc
Confidence            458999999999999999997755

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.76  E-value=0.0002  Score=53.76  Aligned_cols=86  Identities=16%  Similarity=0.079  Sum_probs=58.5

Q ss_pred             cccCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH--HHHhhCCCccccCCCccccC
Q 029437           85 YAKVDAVVYLVDAYDKE-RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE--LRYHLGLSNFTTGKGKVNLA  161 (193)
Q Consensus        85 ~~~~d~vl~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  161 (193)
                      +.+.|-+++|+.+.+|+ +...+.+++-..    ...++..++++||+|+........  ....+..             
T Consensus        77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~a----e~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~-------------  139 (301)
T COG1162          77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLA----EAGGIEPVIVLNKIDLLDDEEAAVKELLREYED-------------  139 (301)
T ss_pred             ccccceEEEEEeccCCCCCHHHHHHHHHHH----HHcCCcEEEEEEccccCcchHHHHHHHHHHHHh-------------
Confidence            34578888888888774 334444444433    235778888899999986554442  2222221             


Q ss_pred             CCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          162 DSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       162 ~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                          ..++++.+|++++.|++++.+++...
T Consensus       140 ----~gy~v~~~s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         140 ----IGYPVLFVSAKNGDGLEELAELLAGK  165 (301)
T ss_pred             ----CCeeEEEecCcCcccHHHHHHHhcCC
Confidence                23688999999999999999988654

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.75  E-value=0.0005  Score=46.17  Aligned_cols=103  Identities=16%  Similarity=0.154  Sum_probs=60.2

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCccccC----CCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCC
Q 029437           24 LFLGLDNAGKTTLLHMLKDERLVQHQ----PTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYD   99 (193)
Q Consensus        24 ~v~G~~~~GKssl~~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~   99 (193)
                      +.-|.+|+|||++.-.+...--....    ...++....+.   +.+.++|+|+...  ......+..+|.++++.+.+ 
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~---yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~-   77 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLD---YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE-   77 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCC---CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-
Confidence            45678999999998665322110000    00000000111   6789999998542  22345678899999999985 


Q ss_pred             hhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437          100 KERFAESKKELDALLSDEALANVPFLVLGNKIDIP  134 (193)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  134 (193)
                      ..++......+..+....  ...++.+++|+.+..
T Consensus        78 ~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~  110 (139)
T cd02038          78 PTSITDAYALIKKLAKQL--RVLNFRVVVNRAESP  110 (139)
T ss_pred             hhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCCH
Confidence            434555555554443221  356778999999743

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.75  E-value=0.0001  Score=51.28  Aligned_cols=53  Identities=17%  Similarity=0.103  Sum_probs=34.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhH
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR   78 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~   78 (193)
                      ..-+.|+|++|||||||++++...-.     ..+.....+......+.+ |.+|.+.++
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~l~-----~~g~~vg~Ik~~~~~~~~-d~~g~Ds~~   58 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPALC-----ARGIRPGLIKHTHHDMDV-DKPGKDSYE   58 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHHHh-----hcCCeEEEEEEcCCCccc-CCCCcHHHH
Confidence            34689999999999999999885421     113334555554444443 777755443

>PRK07261 topology modulation protein; Provisional

Probab=97.74  E-value=2.6e-05  Score=54.38  Aligned_cols=22  Identities=36%  Similarity=0.600  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      +|+|+|++|||||||...+...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999998643

>PF05729 NACHT: NACHT domain

Probab=97.74  E-value=0.00022  Score=48.95  Aligned_cols=21  Identities=33%  Similarity=0.521  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029437           23 ILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ++|.|++|+|||+++..+...
T Consensus         3 l~I~G~~G~GKStll~~~~~~   23 (166)
T PF05729_consen    3 LWISGEPGSGKSTLLRKLAQQ   23 (166)
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            789999999999999988653

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.73  E-value=0.00019  Score=55.78  Aligned_cols=23  Identities=35%  Similarity=0.403  Sum_probs=19.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHh
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~   41 (193)
                      ..-.++++|+.||||||++..+.
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA  227 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLG  227 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34568999999999999998875

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.73  E-value=4.4e-05  Score=58.39  Aligned_cols=24  Identities=33%  Similarity=0.519  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERL   45 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~   45 (193)
                      -++++||+|||||||++.+.+-+.
T Consensus        31 f~vllGPSGcGKSTlLr~IAGLe~   54 (338)
T COG3839          31 FVVLLGPSGCGKSTLLRMIAGLEE   54 (338)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            488999999999999999987663

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.71  E-value=4.6e-05  Score=52.90  Aligned_cols=21  Identities=38%  Similarity=0.553  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ||+++|+||+||||+++++..
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~   21 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIE   21 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHH
Confidence            689999999999999999864

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.71  E-value=0.00029  Score=56.66  Aligned_cols=24  Identities=33%  Similarity=0.614  Sum_probs=21.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHh
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~   41 (193)
                      ++.-|++|+|++||||||+++.++
T Consensus       376 ~kGekVaIvG~nGsGKSTilr~Ll  399 (591)
T KOG0057|consen  376 PKGEKVAIVGSNGSGKSTILRLLL  399 (591)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHH
Confidence            456799999999999999999985

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.70  E-value=0.00021  Score=56.35  Aligned_cols=123  Identities=17%  Similarity=0.092  Sum_probs=63.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC-cc-c-------cCC--------------CCCcceeEE----------EeCCEEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER-LV-Q-------HQP--------------TQYPTSEEL----------SIGKIKF   66 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~-~~-~-------~~~--------------t~~~~~~~~----------~~~~~~~   66 (193)
                      ...++++|++||||||++..+.... .. .       ..+              ..+......          .-.+.++
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence            3468999999999999998886321 00 0       000              001000000          1125678


Q ss_pred             EEEEcCChhhh-H---hhHHhhcc-----cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC
Q 029437           67 KAFDLGGHQIA-R---RVWKDYYA-----KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA  137 (193)
Q Consensus        67 ~~~D~~G~~~~-~---~~~~~~~~-----~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~  137 (193)
                      .++||+|.... .   ..+...+.     ...-+++|+|++...  +.+......+ ...    -+-=+++||.|.....
T Consensus       303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f-~~~----~~~glIlTKLDEt~~~  375 (432)
T PRK12724        303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY-ESL----NYRRILLTKLDEADFL  375 (432)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh-cCC----CCCEEEEEcccCCCCc
Confidence            99999995321 1   11122221     235788999987653  2233333333 211    1236889999986322


Q ss_pred             -CHHHHHHhhCCC
Q 029437          138 -SEEELRYHLGLS  149 (193)
Q Consensus       138 -~~~~~~~~~~~~  149 (193)
                       ..-.+....+.+
T Consensus       376 G~il~i~~~~~lP  388 (432)
T PRK12724        376 GSFLELADTYSKS  388 (432)
T ss_pred             cHHHHHHHHHCCC
Confidence             233344444433

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.69  E-value=0.00068  Score=48.96  Aligned_cols=46  Identities=24%  Similarity=0.289  Sum_probs=30.0

Q ss_pred             cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437           85 YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP  134 (193)
Q Consensus        85 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  134 (193)
                      ..++|.++.|+|.+-. ++... +-...+..+..  -.++.+|+||.|..
T Consensus       153 ~~~vD~vivVvDpS~~-sl~ta-eri~~L~~elg--~k~i~~V~NKv~e~  198 (255)
T COG3640         153 IEGVDLVIVVVDPSYK-SLRTA-ERIKELAEELG--IKRIFVVLNKVDEE  198 (255)
T ss_pred             ccCCCEEEEEeCCcHH-HHHHH-HHHHHHHHHhC--CceEEEEEeeccch
Confidence            3589999999999655 23322 22333333211  37899999999964

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.67  E-value=3.6e-05  Score=51.76  Aligned_cols=20  Identities=35%  Similarity=0.534  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 029437           23 ILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~~   42 (193)
                      |+++|+|||||||+++.+..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999874

...

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.66  E-value=3.7e-05  Score=55.89  Aligned_cols=25  Identities=28%  Similarity=0.410  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLV   46 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~   46 (193)
                      -+.++|++|||||||++.+.+-..+
T Consensus        31 fvsilGpSGcGKSTLLriiAGL~~p   55 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGLEKP   55 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4899999999999999999876533

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.66  E-value=7.7e-05  Score=52.72  Aligned_cols=23  Identities=43%  Similarity=0.465  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      -.++|+|++||||||+++.+.+.
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            47999999999999999998764

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.66  E-value=5.8e-05  Score=52.64  Aligned_cols=99  Identities=20%  Similarity=0.162  Sum_probs=50.2

Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCc----cccCCC--ccccCC
Q 029437           89 DAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSN----FTTGKG--KVNLAD  162 (193)
Q Consensus        89 d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~  162 (193)
                      |++++|+|+.++.+-.  ...+...+. ....+.|+++|+||+|+.+.....++.+.+....    +.....  ...+.+
T Consensus         1 DvVl~VvDar~p~~~~--~~~i~~~~~-l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (172)
T cd04178           1 DVILEVLDARDPLGCR--CPQVEEAVL-QAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQ   77 (172)
T ss_pred             CEEEEEEECCCCCCCC--CHHHHHHHH-hccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhh
Confidence            7899999998863211  112222211 1124689999999999974333333334332221    111000  001100


Q ss_pred             CCC--cceEEEEeeeecCCChhhHHHhhhh
Q 029437          163 SNV--RPLEVFMCSIVRKMGYGDGFKWLSQ  190 (193)
Q Consensus       163 ~~~--~~~~~~~~Sa~~g~gv~el~~~i~~  190 (193)
                      ...  .......+|+..+.|.+++++.+.+
T Consensus        78 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~  107 (172)
T cd04178          78 KSVKVEAASADLLRSSVCFGADCLLKLLKN  107 (172)
T ss_pred             cccccchhhhhhhhhccccCHHHHHHHHHH
Confidence            000  0122344677888888888777654

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.65  E-value=0.0014  Score=51.54  Aligned_cols=122  Identities=14%  Similarity=0.081  Sum_probs=64.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCc---------c---ccCC-------------C-CCcceeEE-----------EeC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERL---------V---QHQP-------------T-QYPTSEEL-----------SIG   62 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~---------~---~~~~-------------t-~~~~~~~~-----------~~~   62 (193)
                      ...|+++|++|+||||.+..+...-.         .   ...+             . .+......           ...
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~  253 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK  253 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence            45799999999999999987742110         0   0000             0 01100000           123


Q ss_pred             CEEEEEEEcCChhhhHh----hHHhhcc---cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437           63 KIKFKAFDLGGHQIARR----VWKDYYA---KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY  135 (193)
Q Consensus        63 ~~~~~~~D~~G~~~~~~----~~~~~~~---~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~  135 (193)
                      +..+.++||+|......    .....+.   ..+-+++|+|++...  ..+.+.+..+..     --+-=+++||.|...
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~-----~~~~~~I~TKlDet~  326 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSP-----FSYKTVIFTKLDETT  326 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcC-----CCCCEEEEEeccCCC
Confidence            57899999999533211    1122222   233688999997652  233344444311     113368899999863


Q ss_pred             C-CCHHHHHHhhCC
Q 029437          136 A-ASEEELRYHLGL  148 (193)
Q Consensus       136 ~-~~~~~~~~~~~~  148 (193)
                      . ...-.+....+.
T Consensus       327 ~~G~~l~~~~~~~~  340 (388)
T PRK12723        327 CVGNLISLIYEMRK  340 (388)
T ss_pred             cchHHHHHHHHHCC
Confidence            2 223334444443

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.64  E-value=5e-05  Score=44.54  Aligned_cols=21  Identities=29%  Similarity=0.450  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029437           23 ILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~~~   43 (193)
                      |++.|++|+||||+.+.+...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998764

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.64  E-value=6e-05  Score=54.34  Aligned_cols=22  Identities=36%  Similarity=0.573  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      --|+++|++|||||||++.+.+
T Consensus        31 E~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          31 EMVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             cEEEEECCCCCcHHHHHHHHhc
Confidence            3589999999999999999987

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.63  E-value=0.00098  Score=45.66  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      +.-.++|+|++|+|||||++.+.+..
T Consensus        24 ~g~~~~i~G~nGsGKStll~~l~g~~   49 (157)
T cd00267          24 AGEIVALVGPNGSGKSTLLRAIAGLL   49 (157)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            33578999999999999999998754

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.63  E-value=6.9e-05  Score=41.64  Aligned_cols=45  Identities=24%  Similarity=0.405  Sum_probs=26.2

Q ss_pred             ccCCEEEEEEECCChhh--HHHHHHHHHHHHcCCCCCCCcEEEEEeCCC
Q 029437           86 AKVDAVVYLVDAYDKER--FAESKKELDALLSDEALANVPFLVLGNKID  132 (193)
Q Consensus        86 ~~~d~vl~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~D  132 (193)
                      +-.++|+|++|.+....  .++-...+.++-..  ..+.|+++|+||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence            45689999999987654  33444445554322  24899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PRK14530 adenylate kinase; Provisional

Probab=97.62  E-value=5.8e-05  Score=54.60  Aligned_cols=22  Identities=41%  Similarity=0.530  Sum_probs=19.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHh
Q 029437           20 EAKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~   41 (193)
                      ..+|+|+|+|||||||+.+.|.
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La   24 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLA   24 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3589999999999999999985

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.61  E-value=5.7e-05  Score=50.44  Aligned_cols=25  Identities=28%  Similarity=0.404  Sum_probs=21.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .-.++|+|++|+|||||++.+.+..
T Consensus        11 g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   11 GEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEEccCCCccccceeeecccc
Confidence            3479999999999999999998754

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.61  E-value=9.6e-05  Score=54.02  Aligned_cols=28  Identities=29%  Similarity=0.265  Sum_probs=23.7

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ......-|+|.|++|||||||++.+.+.
T Consensus        29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~   56 (229)
T PRK09270         29 EPQRRTIVGIAGPPGAGKSTLAEFLEAL   56 (229)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3456789999999999999999988753

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.60  E-value=0.00019  Score=53.62  Aligned_cols=108  Identities=15%  Similarity=0.073  Sum_probs=59.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc--------ccCC--------------CCCcceeEE--------------EeCCE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLV--------QHQP--------------TQYPTSEEL--------------SIGKI   64 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~--------~~~~--------------t~~~~~~~~--------------~~~~~   64 (193)
                      -+++++|++|+||||++..+...-..        ...+              ..+......              ...+.
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~  155 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV  155 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence            68999999999999999877432100        0000              001000000              11246


Q ss_pred             EEEEEEcCChhhhH----hhHHhhc--ccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437           65 KFKAFDLGGHQIAR----RVWKDYY--AKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY  135 (193)
Q Consensus        65 ~~~~~D~~G~~~~~----~~~~~~~--~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~  135 (193)
                      .+.++||+|.....    ..+...+  ...+.+++|+|++...  +...+....+ ..    -.+-=+++||.|...
T Consensus       156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f-~~----~~~~~~I~TKlDet~  225 (270)
T PRK06731        156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNF-KD----IHIDGIVFTKFDETA  225 (270)
T ss_pred             CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHh-CC----CCCCEEEEEeecCCC
Confidence            89999999965321    1111222  2457789999986431  2233333333 11    123368899999874

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.59  E-value=0.00042  Score=53.50  Aligned_cols=84  Identities=20%  Similarity=0.328  Sum_probs=49.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHh--------------cCCccc-------------cCCCCCcc------------eeEE
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLK--------------DERLVQ-------------HQPTQYPT------------SEEL   59 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~--------------~~~~~~-------------~~~t~~~~------------~~~~   59 (193)
                      +.--|+++|-.|+||||.+..+.              .+.|+.             ..|-.+.+            ...+
T Consensus       100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f  179 (483)
T KOG0780|consen  100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF  179 (483)
T ss_pred             CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence            44569999999999999987762              222221             00100000            1112


Q ss_pred             EeCCEEEEEEEcCChhh-hHhhHHhh-----cccCCEEEEEEECCChhh
Q 029437           60 SIGKIKFKAFDLGGHQI-ARRVWKDY-----YAKVDAVVYLVDAYDKER  102 (193)
Q Consensus        60 ~~~~~~~~~~D~~G~~~-~~~~~~~~-----~~~~d~vl~v~d~~~~~~  102 (193)
                      .-++..+.+.||.|-.. ..+++.+.     .-..|-+|+|+|++=.+.
T Consensus       180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQa  228 (483)
T KOG0780|consen  180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQA  228 (483)
T ss_pred             HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHh
Confidence            23357899999999322 22333222     236799999999976543

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=97.59  E-value=0.00052  Score=52.55  Aligned_cols=23  Identities=35%  Similarity=0.423  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .+|+|.|++||||||+++++...
T Consensus       145 ~nilI~G~tGSGKTTll~aL~~~  167 (323)
T PRK13833        145 LNIVISGGTGSGKTTLANAVIAE  167 (323)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998763

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=0.002  Score=52.02  Aligned_cols=118  Identities=17%  Similarity=0.200  Sum_probs=65.7

Q ss_pred             chHHHHHHHHHhhCC-CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhh
Q 029437            2 FLLDWFYGVLASLGL-WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRV   80 (193)
Q Consensus         2 ~~~~~~~~~~~~~~~-~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~   80 (193)
                      +|++|+++=-...+. .+-..=|+++||||+|||-|.+++.+..-.+..-..+.     +++    .++---|-.+.+.+
T Consensus       318 EiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGS-----EFd----Em~VGvGArRVRdL  388 (752)
T KOG0734|consen  318 EIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGS-----EFD----EMFVGVGARRVRDL  388 (752)
T ss_pred             HHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEecccc-----chh----hhhhcccHHHHHHH
Confidence            578888876655554 45566799999999999999999987653322111111     111    11122355666777


Q ss_pred             HHhhcccCCEEEEEEECC------ChhhHHHHHHHHHHHHcCC--CCCCCcEEEEE
Q 029437           81 WKDYYAKVDAVVYLVDAY------DKERFAESKKELDALLSDE--ALANVPFLVLG  128 (193)
Q Consensus        81 ~~~~~~~~d~vl~v~d~~------~~~~~~~~~~~~~~~~~~~--~~~~~pviiv~  128 (193)
                      +...-.++-+|||+=-++      ++.......+.+++++-+.  ..++-++|+++
T Consensus       389 F~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvig  444 (752)
T KOG0734|consen  389 FAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIG  444 (752)
T ss_pred             HHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEe
Confidence            766655666666543221      1222334455555554332  12345555544

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.58  E-value=0.00081  Score=42.96  Aligned_cols=98  Identities=14%  Similarity=0.017  Sum_probs=55.4

Q ss_pred             EEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEe---CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh
Q 029437           25 FLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSI---GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE  101 (193)
Q Consensus        25 v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~  101 (193)
                      +-+.+|+||||+...+...-....    +....-++.   ....+.++|+|+.....  ....+..+|.++++.+.+. .
T Consensus         5 ~~~kgg~gkt~~~~~la~~~~~~~----~~~~~l~d~d~~~~~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~-~   77 (106)
T cd03111           5 IGAKGGVGATTLAANLAVALAKEA----GRRVLLVDLDLQFGDDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDL-P   77 (106)
T ss_pred             ECCCCCCcHHHHHHHHHHHHHhcC----CCcEEEEECCCCCCCCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCCh-H
Confidence            346788999998766632211100    000000000   01178999999865432  2345678899999998744 4


Q ss_pred             hHHHHHHHHHHHHcCCCCC-CCcEEEEEeC
Q 029437          102 RFAESKKELDALLSDEALA-NVPFLVLGNK  130 (193)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~-~~pviiv~nK  130 (193)
                      ++......+..+... ..+ ...+.+++|+
T Consensus        78 s~~~~~~~~~~l~~~-~~~~~~~~~lVvNr  106 (106)
T cd03111          78 SIRNAKRLLELLRVL-DYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence            456666665555332 222 4566777775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.58  E-value=7.8e-05  Score=52.28  Aligned_cols=38  Identities=26%  Similarity=0.392  Sum_probs=22.9

Q ss_pred             HHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437            4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ++.+..++. .......-.++|.|++|+|||+|++++..
T Consensus         9 ~~~l~~~l~-~~~~~~~~~~ll~G~~G~GKT~ll~~~~~   46 (185)
T PF13191_consen    9 IERLRDLLD-AAQSGSPRNLLLTGESGSGKTSLLRALLD   46 (185)
T ss_dssp             HHHHHHTTG-GTSS-----EEE-B-TTSSHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            344555555 44455567899999999999999998754

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.57  E-value=0.00057  Score=43.32  Aligned_cols=81  Identities=16%  Similarity=0.048  Sum_probs=48.2

Q ss_pred             EEEEc-CCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeC-CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCCh
Q 029437           23 ILFLG-LDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIG-KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDK  100 (193)
Q Consensus        23 i~v~G-~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~  100 (193)
                      |.+.| .+|+||||+...+...-...     +....-++.+ ...+.++|+|+.....  ....+..+|.++++++.+ .
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~-----~~~vl~~d~d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~-~   73 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARR-----GKRVLLIDLDPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPS-P   73 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhC-----CCcEEEEeCCCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCC-H
Confidence            55666 67999999987664321110     1111111111 1678999999875332  225667789999999884 4


Q ss_pred             hhHHHHHHHHH
Q 029437          101 ERFAESKKELD  111 (193)
Q Consensus       101 ~~~~~~~~~~~  111 (193)
                      .++....+.+.
T Consensus        74 ~s~~~~~~~~~   84 (104)
T cd02042          74 LDLDGLEKLLE   84 (104)
T ss_pred             HHHHHHHHHHH
Confidence            45555555544

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.57  E-value=9.1e-05  Score=57.21  Aligned_cols=93  Identities=15%  Similarity=0.210  Sum_probs=56.3

Q ss_pred             HHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce--eEEEeCCEEEEEEEcCChhhh--Hh
Q 029437            4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTS--EELSIGKIKFKAFDLGGHQIA--RR   79 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~G~~~~--~~   79 (193)
                      |.-|+++... -..++.+.++++|-||+||||++|.|-..+....-|..+.+.  ..+.. ..++=++|+||..--  ..
T Consensus       292 I~llRQf~kL-h~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL-mkrIfLIDcPGvVyps~ds  369 (572)
T KOG2423|consen  292 IQLLRQFAKL-HSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL-MKRIFLIDCPGVVYPSSDS  369 (572)
T ss_pred             HHHHHHHHhh-ccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH-HhceeEecCCCccCCCCCc
Confidence            3444444422 225788999999999999999999998887666555444321  11111 235678899995321  12


Q ss_pred             hHHhhcccCCEEEEEEECCChh
Q 029437           80 VWKDYYAKVDAVVYLVDAYDKE  101 (193)
Q Consensus        80 ~~~~~~~~~d~vl~v~d~~~~~  101 (193)
                      .....+   -+|+-|-++.+|+
T Consensus       370 et~ivL---kGvVRVenv~~pe  388 (572)
T KOG2423|consen  370 ETDIVL---KGVVRVENVKNPE  388 (572)
T ss_pred             hHHHHh---hceeeeeecCCHH
Confidence            222222   3566666776664

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.56  E-value=0.00085  Score=54.10  Aligned_cols=37  Identities=22%  Similarity=0.356  Sum_probs=25.4

Q ss_pred             HHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437            5 DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .|++.+.+..+..... -++++||+||||||-++-++.
T Consensus        96 ~WL~~~~~~~~~l~~~-iLLltGPsGcGKSTtvkvLsk  132 (634)
T KOG1970|consen   96 QWLKQVAEFTPKLGSR-ILLLTGPSGCGKSTTVKVLSK  132 (634)
T ss_pred             HHHHHHHHhccCCCce-EEEEeCCCCCCchhHHHHHHH
Confidence            4555444444433333 378999999999999998864

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.56  E-value=8e-05  Score=53.61  Aligned_cols=26  Identities=31%  Similarity=0.341  Sum_probs=22.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .+...|+|.|++|||||||++.+...
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            46678999999999999999998753

>PRK08233 hypothetical protein; Provisional

Probab=97.55  E-value=8.2e-05  Score=52.16  Aligned_cols=25  Identities=32%  Similarity=0.384  Sum_probs=21.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      +..-|+|.|++||||||+.+++...
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhh
Confidence            3467999999999999999999753

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.55  E-value=0.00053  Score=52.04  Aligned_cols=126  Identities=20%  Similarity=0.216  Sum_probs=68.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhc--------------CCccc-----------------cCCCCCcceeEEEe----
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKD--------------ERLVQ-----------------HQPTQYPTSEELSI----   61 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~--------------~~~~~-----------------~~~t~~~~~~~~~~----   61 (193)
                      ..+...|+++|-.|+||||-+-.+..              +.|+.                 .....+.....+-+    
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~  215 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ  215 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence            34578899999999999999977731              11210                 00001111111211    


Q ss_pred             ----CCEEEEEEEcCChhh-----------hHhhHHhh-cccCCEEEEEEECCCh-hhHHHHHHHHHHHHcCCCCCCCcE
Q 029437           62 ----GKIKFKAFDLGGHQI-----------ARRVWKDY-YAKVDAVVYLVDAYDK-ERFAESKKELDALLSDEALANVPF  124 (193)
Q Consensus        62 ----~~~~~~~~D~~G~~~-----------~~~~~~~~-~~~~d~vl~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~pv  124 (193)
                          .++.+.++||+|--.           ........ ....|-++++.|+.-. +.+++...+.... .       --
T Consensus       216 ~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav-~-------l~  287 (340)
T COG0552         216 AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAV-G-------LD  287 (340)
T ss_pred             HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhc-C-------Cc
Confidence                257899999999211           11111111 1234568999999765 3455554433332 1       11


Q ss_pred             EEEEeCCCCC-CCCCHHHHHHhhCCCc
Q 029437          125 LVLGNKIDIP-YAASEEELRYHLGLSN  150 (193)
Q Consensus       125 iiv~nK~D~~-~~~~~~~~~~~~~~~~  150 (193)
                      =+++||.|-. ..-..-.+..+++.+-
T Consensus       288 GiIlTKlDgtAKGG~il~I~~~l~~PI  314 (340)
T COG0552         288 GIILTKLDGTAKGGIILSIAYELGIPI  314 (340)
T ss_pred             eEEEEecccCCCcceeeeHHHHhCCCE
Confidence            4788999965 2223334555555444

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.55  E-value=0.00011  Score=54.18  Aligned_cols=24  Identities=33%  Similarity=0.383  Sum_probs=20.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .--+.|+||.|||||||++++.+-
T Consensus        28 G~i~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          28 GEITGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcc
Confidence            345889999999999999999763

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.54  E-value=4.8e-05  Score=52.51  Aligned_cols=22  Identities=36%  Similarity=0.549  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ||+|+|.+|+|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            6999999999999999999765

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=97.54  E-value=0.00085  Score=53.00  Aligned_cols=25  Identities=28%  Similarity=0.452  Sum_probs=21.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ..-.++|.|++|+|||++++.+...
T Consensus        54 ~~~~~lI~G~~GtGKT~l~~~v~~~   78 (394)
T PRK00411         54 RPLNVLIYGPPGTGKTTTVKKVFEE   78 (394)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3456899999999999999998753

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=97.54  E-value=0.00014  Score=50.79  Aligned_cols=22  Identities=36%  Similarity=0.658  Sum_probs=19.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 029437           23 ILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      +.++||+|||||||++-+...+
T Consensus        31 ~fl~GpSGAGKSTllkLi~~~e   52 (223)
T COG2884          31 VFLTGPSGAGKSTLLKLIYGEE   52 (223)
T ss_pred             EEEECCCCCCHHHHHHHHHhhh
Confidence            6889999999999999998765

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=97.53  E-value=0.00011  Score=50.60  Aligned_cols=51  Identities=27%  Similarity=0.303  Sum_probs=34.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhH
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR   78 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~   78 (193)
                      .|.|+|++|+|||||+.++...-     ...+.....+......+.+ |.+|...++
T Consensus         3 vi~i~G~~gsGKTTli~~L~~~l-----~~~g~~V~~iK~~~~~~~~-d~~g~Ds~~   53 (159)
T cd03116           3 VIGFVGYSGSGKTTLLEKLIPAL-----SARGLRVAVIKHDHHDFDI-DTPGKDSYR   53 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH-----HHcCCcEEEEEecCCcccc-cCccchHHH
Confidence            58999999999999999998532     1223445566665555444 777765544

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=97.52  E-value=0.0011  Score=49.60  Aligned_cols=22  Identities=41%  Similarity=0.383  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      -|+|.|++|+||||+++++...
T Consensus        82 lilisG~tGSGKTT~l~all~~  103 (264)
T cd01129          82 IILVTGPTGSGKTTTLYSALSE  103 (264)
T ss_pred             EEEEECCCCCcHHHHHHHHHhh
Confidence            4999999999999999988654

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.52  E-value=7e-05  Score=50.13  Aligned_cols=25  Identities=32%  Similarity=0.510  Sum_probs=22.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      +...+|+|+|.||+||||+..++..
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHH
Confidence            4457999999999999999999863

>TIGR00235 udk uridine kinase

Probab=97.51  E-value=8.8e-05  Score=53.33  Aligned_cols=26  Identities=27%  Similarity=0.250  Sum_probs=22.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      +....|+|+|++|||||||++.+.+.
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            45578999999999999999999753

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK06217 hypothetical protein; Validated

Probab=97.51  E-value=8.6e-05  Score=52.32  Aligned_cols=23  Identities=30%  Similarity=0.403  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .+|+|+|.+||||||+..+|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999998644

>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species

Probab=97.50  E-value=0.0002  Score=55.49  Aligned_cols=40  Identities=15%  Similarity=0.199  Sum_probs=34.6

Q ss_pred             chHHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHh
Q 029437            2 FLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~   41 (193)
                      +++.|+..+...+++..+.-.|+|.|||++|||.+...|.
T Consensus       244 ~~i~Fl~~lk~~Lkg~PKKnClvi~GPPdTGKS~F~~SLi  283 (432)
T PF00519_consen  244 EFISFLIALKQFLKGIPKKNCLVIYGPPDTGKSMFCMSLI  283 (432)
T ss_dssp             -HHHHHHHHHHHHHTBTTSSEEEEESSCCCSHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhCCCcccEEEEECCCCCchhHHHHHHH
Confidence            5688888888888888888899999999999999998775

The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.50  E-value=0.00021  Score=51.63  Aligned_cols=26  Identities=27%  Similarity=0.508  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ..-.++++|++|||||||++.+.+..
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44579999999999999999998754

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.50  E-value=0.00021  Score=51.73  Aligned_cols=26  Identities=31%  Similarity=0.456  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ..-.++|+|++|||||||++.+.+..
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            34578999999999999999998754

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK03839 putative kinase; Provisional

Probab=97.49  E-value=9.6e-05  Score=51.90  Aligned_cols=22  Identities=32%  Similarity=0.469  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      +|+|+|+|||||||+.+++...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998654

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.49  E-value=0.00012  Score=48.50  Aligned_cols=24  Identities=42%  Similarity=0.506  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      -.++++|++|+|||+++..+...-
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~   26 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALAREL   26 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhcc
Confidence            479999999999999999997654

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=97.49  E-value=0.00039  Score=50.51  Aligned_cols=36  Identities=19%  Similarity=0.211  Sum_probs=26.7

Q ss_pred             HHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437            4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      +..++.|..    ....-.+++.|++|+|||+++..+...
T Consensus        26 ~~~l~~~~~----~~~~~~lll~G~~G~GKT~la~~~~~~   61 (226)
T TIGR03420        26 LAALRQLAA----GKGDRFLYLWGESGSGKSHLLQAACAA   61 (226)
T ss_pred             HHHHHHHHh----cCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            455555542    234457999999999999999998753

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.48  E-value=0.00024  Score=52.05  Aligned_cols=26  Identities=23%  Similarity=0.423  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ..-.++|+|++|||||||++.+.+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          25 RGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34468999999999999999998754

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.48  E-value=0.00016  Score=54.29  Aligned_cols=51  Identities=24%  Similarity=0.292  Sum_probs=33.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhH
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR   78 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~   78 (193)
                      .-.++|+|.+|+|||||++.+.+-+        .++.+.+..++..+.-.+-.+....+
T Consensus        32 GeI~GIIG~SGAGKSTLiR~iN~Le--------~PtsG~v~v~G~di~~l~~~~Lr~~R   82 (339)
T COG1135          32 GEIFGIIGYSGAGKSTLLRLINLLE--------RPTSGSVFVDGQDLTALSEAELRQLR   82 (339)
T ss_pred             CcEEEEEcCCCCcHHHHHHHHhccC--------CCCCceEEEcCEecccCChHHHHHHH
Confidence            3468999999999999999988765        33445555555444444444443333

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.48  E-value=9.4e-05  Score=48.84  Aligned_cols=21  Identities=43%  Similarity=0.509  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029437           23 ILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~~~   43 (193)
                      |++.|+||+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999998864

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.48  E-value=0.0001  Score=52.05  Aligned_cols=23  Identities=30%  Similarity=0.559  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .++|+|++|||||||++.+....
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            68999999999999999997653

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.48  E-value=0.00026  Score=50.13  Aligned_cols=26  Identities=35%  Similarity=0.471  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ..-.++|+|++|||||||++.+.+..
T Consensus        17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        17 RGEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34469999999999999999998754

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.47  E-value=9.4e-05  Score=51.86  Aligned_cols=22  Identities=36%  Similarity=0.508  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .++|+|++||||||+++.+...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998654

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=97.47  E-value=0.00016  Score=55.64  Aligned_cols=25  Identities=28%  Similarity=0.363  Sum_probs=21.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ...+|+|+|++||||||+++++...
T Consensus       159 ~~~nili~G~tgSGKTTll~aL~~~  183 (332)
T PRK13900        159 SKKNIIISGGTSTGKTTFTNAALRE  183 (332)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHHhh
Confidence            3468999999999999999998753

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.46  E-value=0.00026  Score=51.00  Aligned_cols=26  Identities=35%  Similarity=0.540  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ..-.++|+|++|||||||++.+.+..
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            34568999999999999999998754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PLN03025 replication factor C subunit; Provisional

Probab=97.46  E-value=0.0027  Score=48.77  Aligned_cols=37  Identities=19%  Similarity=0.252  Sum_probs=26.5

Q ss_pred             hHHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437            3 LLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ++..++.+...    ....++++.||+|+||||++..+...
T Consensus        21 ~~~~L~~~~~~----~~~~~lll~Gp~G~GKTtla~~la~~   57 (319)
T PLN03025         21 AVSRLQVIARD----GNMPNLILSGPPGTGKTTSILALAHE   57 (319)
T ss_pred             HHHHHHHHHhc----CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            35566666532    22236899999999999999988654

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.45  E-value=0.00013  Score=51.90  Aligned_cols=25  Identities=40%  Similarity=0.543  Sum_probs=21.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .--.+|+||.|+|||||++.+++.-
T Consensus        27 Gev~ailGPNGAGKSTlLk~LsGel   51 (259)
T COG4559          27 GEVLAILGPNGAGKSTLLKALSGEL   51 (259)
T ss_pred             CcEEEEECCCCccHHHHHHHhhCcc
Confidence            3458999999999999999998754

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.45  E-value=0.0001  Score=52.62  Aligned_cols=21  Identities=29%  Similarity=0.359  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029437           23 ILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~~~   43 (193)
                      |+|+|++|||||||++.+.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998654

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.45  E-value=0.00018  Score=50.88  Aligned_cols=24  Identities=21%  Similarity=0.441  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .-|+|+||+|||||||++++....
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            458999999999999999997653

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.45  E-value=0.00082  Score=52.75  Aligned_cols=23  Identities=39%  Similarity=0.540  Sum_probs=19.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHH
Q 029437           18 QKEAKILFLGLDNAGKTTLLHML   40 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l   40 (193)
                      +.+..|+++|-.||||||..-.|
T Consensus        98 ~~P~vImmvGLQGsGKTTt~~KL  120 (451)
T COG0541          98 KPPTVILMVGLQGSGKTTTAGKL  120 (451)
T ss_pred             CCCeEEEEEeccCCChHhHHHHH
Confidence            34567999999999999998776

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.45  E-value=0.00011  Score=48.24  Aligned_cols=21  Identities=33%  Similarity=0.484  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029437           23 ILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~~~   43 (193)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998754

...

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=97.44  E-value=0.0011  Score=50.74  Aligned_cols=24  Identities=38%  Similarity=0.595  Sum_probs=21.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ..+|+|+|++||||||+++++...
T Consensus       148 ~~~ilI~G~tGSGKTTll~aL~~~  171 (319)
T PRK13894        148 HRNILVIGGTGSGKTTLVNAIINE  171 (319)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHh
Confidence            458999999999999999999864

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=97.44  E-value=0.0003  Score=50.75  Aligned_cols=26  Identities=31%  Similarity=0.448  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ..-.++|+|++|||||||++.+.+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          25 PGEFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34469999999999999999998753

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	193
1f6b_A	198	Crystal Structure Of Sar1-Gdp Complex Length = 198		2e-53
2fmx_A	195	An Open Conformation Of Switch I Revealed By Sar1-g		3e-52
2gao_A	208	Crystal Structure Of Human Sar1a In Complex With Gd		3e-51
2fa9_A	189	The Crystal Structure Of Sar1[h79g]-gdp Provides In		4e-51
1m2o_B	190	Crystal Structure Of The Sec23-Sar1 Complex Length		3e-49
2qtv_B	167	Structure Of Sec23-Sar1 Complexed With The Active F		3e-42
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		1e-12
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		3e-12
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		3e-12
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		5e-12
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		5e-12
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		5e-12
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		6e-12
3bh6_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		1e-11
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		3e-11
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		3e-11
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		7e-11
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		1e-10
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		1e-10
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		1e-10
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		1e-10
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		2e-10
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		2e-10
4dcn_A	166	Crystal Structure Analysis Of The Arfaptin2 Bar Dom		2e-10
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		2e-10
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		2e-10
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		3e-10
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		4e-10
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		4e-10
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		9e-10
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		9e-10
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		1e-09
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		1e-09
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		1e-09
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		1e-09
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-09
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		1e-09
1upt_A	171	Structure Of A Complex Of The Golgin-245 Grip Domai		1e-09
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		2e-09
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		2e-09
2x77_A	189	Crystal Structure Of Leishmania Major Adp Ribosylat		3e-09
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		3e-09
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		8e-09
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		9e-09
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		4e-07
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		4e-07
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		1e-06
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		2e-06
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		2e-06
4bas_A	199	Structure Of The Arl6 Bbs3 Small Gtpase From Trypan		3e-06
2h57_A	190	Crystal Structure Of Human Adp-Ribosylation Factor-		8e-06
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		3e-05

>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198

Iteration: 1
 Score =  204 bits (520), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 104/195 (53%), Positives = 125/195 (64%), Gaps = 4/195 (2%)
Query: 2   FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSE 57
           F+ DW Y     VL  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSE
Sbjct: 3   FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE 62
Query: 58  ELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXX 117
           EL+I  + F  FDLGGH  ARRVW                   ER  ESK+         
Sbjct: 63  ELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE 122
Query: 118 XXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVR 177
              NVP L+LGNKID P A SEE LR   GL   TTGKG V+L + N RPLEVFMCS+++
Sbjct: 123 TIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLK 182
Query: 178 KMGYGDGFKWLSQYI 192
           + GYG+GF+W++QYI
Sbjct: 183 RQGYGEGFRWMAQYI 197

>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195

Iteration: 1
 Score =  201 bits (510), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 101/186 (54%), Positives = 121/186 (65%)
Query: 7   FYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKF 66
           F  VL  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F
Sbjct: 9   FSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 68
Query: 67  KAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLV 126
             FDLGGH  ARRVW                   ER  ESK+            NVP L+
Sbjct: 69  TTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILI 128
Query: 127 LGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFK 186
           LGNKID P A SEE LR   GL   TTGKG V+L + N RPLEVFMCS++++ GYG+GF+
Sbjct: 129 LGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 188
Query: 187 WLSQYI 192
           W++QYI
Sbjct: 189 WMAQYI 194

>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208

Iteration: 1
 Score =  197 bits (501), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 100/188 (53%), Positives = 120/188 (63%)
Query: 5   DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKI 64
           + F  VL  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  +
Sbjct: 20  NGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 79
Query: 65  KFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPF 124
            F  FDLGGH+ ARRVW                    R  ESK             NVP 
Sbjct: 80  TFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPI 139
Query: 125 LVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDG 184
           L+LGNKID   A SEE+LR   GL   TTGKG V L + N RP+EVFMCS++++ GYG+G
Sbjct: 140 LILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEG 199
Query: 185 FKWLSQYI 192
           F+WLSQYI
Sbjct: 200 FRWLSQYI 207

>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189

Iteration: 1
 Score =  197 bits (500), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 100/186 (53%), Positives = 120/186 (64%)
Query: 7   FYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKF 66
           F  VL  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F
Sbjct: 3   FSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 62
Query: 67  KAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLV 126
             FDLGG   ARRVW                   ER  ESK+            NVP L+
Sbjct: 63  TTFDLGGGIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILI 122
Query: 127 LGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFK 186
           LGNKID P A SEE LR   GL   TTGKG V+L + N RPLEVFMCS++++ GYG+GF+
Sbjct: 123 LGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 182
Query: 187 WLSQYI 192
           W++QYI
Sbjct: 183 WMAQYI 188

>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190

Iteration: 1
 Score =  191 bits (484), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 101/187 (54%), Positives = 119/187 (63%), Gaps = 5/187 (2%)
Query: 6   WFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIK 65
           WF  VLASLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG IK
Sbjct: 9   WFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIK 68
Query: 66  FKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFL 125
           F  FDLGGH  ARR+W                   ERF E++             +VPF+
Sbjct: 69  FTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFV 128
Query: 126 VLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGF 185
           +LGNKID P A SE ELR  LGL N TTG  ++       RP+EVFMCS+V + GY + F
Sbjct: 129 ILGNKIDAPNAVSEAELRSALGLLN-TTGSQRI----EGQRPVEVFMCSVVMRNGYLEAF 183
Query: 186 KWLSQYI 192
           +WLSQYI
Sbjct: 184 QWLSQYI 190

>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167

Iteration: 1
 Score =  167 bits (423), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 107/170 (62%), Gaps = 5/170 (2%)
Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW 81
           K+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG IKF  FDLGGH  ARR+W
Sbjct: 3   KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 62
Query: 82  XXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEE 141
                              ERF E++             +VPF++LGNKID P A SE E
Sbjct: 63  KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 122
Query: 142 LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191
           LR  LGL N TTG  ++       RP+EVFMCS+V + GY + F+WLSQY
Sbjct: 123 LRSALGLLN-TTGSQRI----EGQRPVEVFMCSVVMRNGYLEAFQWLSQY 167

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 71/180 (39%), Gaps = 14/180 (7%)
Query: 16  LW--QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGG 73
           LW   KE +IL LGLD AGKTT+L+ L+   +V  +PT     E LS   +K   +DLGG
Sbjct: 12  LWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGG 71
Query: 74  HQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDI 133
               R  W                   +R + + K            +   LV  NK D 
Sbjct: 72  QTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ 131
Query: 134 PYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
           P A S  E+   L L         V L D   R   +   S ++  G  +G  WL   IK
Sbjct: 132 PGALSASEVSKELNL---------VELKD---RSWSIVASSAIKGEGITEGLDWLIDVIK 179

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 69/176 (39%), Gaps = 12/176 (6%)
Query: 18  QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
            KE +IL +GLD AGKTT+L+ LK   ++   PT     E +    I F  +D+GG    
Sbjct: 15  NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYCNISFTVWDVGGQDRI 74
Query: 78  RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
           R +W                    R  E+++            N  +LV  NK D+P A 
Sbjct: 75  RSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLPEAM 134
Query: 138 SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
           S  E+   LGL +               RP  +         G  +G +WLS  +K
Sbjct: 135 SAAEITEKLGLHSIRN------------RPWFIQATCATSGEGLYEGLEWLSNCLK 178

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 69/176 (39%), Gaps = 12/176 (6%)
Query: 18  QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
            KE +IL +GLD AGKTT+L+ LK   ++   PT     E +    I F  +D+GG    
Sbjct: 15  NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRI 74
Query: 78  RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
           R +W                    R  E+++            N  +LV  NK D+P A 
Sbjct: 75  RSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAM 134
Query: 138 SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
           S  E+   LGL +               RP  +         G  +G +WLS  +K
Sbjct: 135 SAAEITEKLGLHSIRN------------RPWFIQATCATSGEGLYEGLEWLSNSLK 178

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 67/174 (38%), Gaps = 12/174 (6%)
Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR 78
           +E +IL LGLDNAGKTTLL  L  E +    PTQ    + +     K   +D+GG +  R
Sbjct: 16  QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 75
Query: 79  RVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAAS 138
             W                   +RF E+ +             VP L+  NK D+  AA 
Sbjct: 76  PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 135
Query: 139 EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192
             E+   L L                 R  ++  CS +   G  DG  W+ + +
Sbjct: 136 ASEIAEGLNLHTIRD------------RVWQIQSCSALTGEGVQDGMNWVCKNV 177

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 67/174 (38%), Gaps = 12/174 (6%)
Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR 78
           +E +IL LGLDNAGKTTLL  L  E +    PTQ    + +     K   +D+GG +  R
Sbjct: 15  QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 74
Query: 79  RVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAAS 138
             W                   +RF E+ +             VP L+  NK D+  AA 
Sbjct: 75  PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 134
Query: 139 EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192
             E+   L L                 R  ++  CS +   G  DG  W+ + +
Sbjct: 135 ASEIAEGLNLHTIRD------------RVWQIQSCSALTGEGVQDGMNWVCKNV 176

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 67/173 (38%), Gaps = 12/173 (6%)
Query: 20  EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARR 79
           E +IL LGLDNAGKTTLL  L  E +    PTQ    + +     K   +D+GG +  R 
Sbjct: 4   EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRP 63
Query: 80  VWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASE 139
            W                   +RF E+ +             VP L+  NK D+  AA  
Sbjct: 64  YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA 123
Query: 140 EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192
            E+   L            NL     R  ++  CS +   G  DG  W+ + +
Sbjct: 124 SEIAEGL------------NLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 69/176 (39%), Gaps = 12/176 (6%)
Query: 18  QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
            KE +IL +GLD AGKTT+L+ LK   ++   PT     E +    I F  +D+GG    
Sbjct: 15  NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRI 74
Query: 78  RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
           R +W                    R  E+++            N  +LV  NK D+P A 
Sbjct: 75  RSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAM 134
Query: 138 SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
           S  E+   LGL +               RP  +         G  +G +WLS  +K
Sbjct: 135 SAAEITEKLGLHSIRN------------RPWFIQSTCATSGEGLYEGLEWLSNNLK 178

>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 67/173 (38%), Gaps = 12/173 (6%)
Query: 20  EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARR 79
           E +IL LGLDNAGKTTLL  L  E +    PTQ    + +     K   +D+GG +  R 
Sbjct: 4   EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGLRKIRP 63
Query: 80  VWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASE 139
            W                   +RF E+ +             VP L+  NK D+  AA  
Sbjct: 64  YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA 123
Query: 140 EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192
            E+   L            NL     R  ++  CS +   G  DG  W+ + +
Sbjct: 124 SEIAEGL------------NLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 67/172 (38%), Gaps = 12/172 (6%)
Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW 81
           +IL +GLD AGKTT+L+ LK   ++   PT     E +    I F  +D+GG    R +W
Sbjct: 2   RILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLW 61
Query: 82  XXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEE 141
                               R  E+++            N  +LV  NK D+P A S  E
Sbjct: 62  RHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAE 121
Query: 142 LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
           +   LGL +               RP  +         G  +G +WLS  +K
Sbjct: 122 ITEKLGLHSIRN------------RPWFIQATCATSGEGLYEGLEWLSNSLK 161

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 62/150 (41%), Gaps = 6/150 (4%)
Query: 12  ASLGLW------QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIK 65
            S+G W      +KE +IL +GLD AGKT++L+ LK   +V   PT     E +    I 
Sbjct: 3   GSMGSWLSKLLGKKEMRILMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVETVEYKNIS 62
Query: 66  FKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFL 125
           F  +D+GG    R +W                   +R  E+++            N   L
Sbjct: 63  FTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILL 122
Query: 126 VLGNKIDIPYAASEEELRYHLGLSNFTTGK 155
           V  NK D+P A S  E+   LGL      K
Sbjct: 123 VFANKHDLPQAMSISEVTEKLGLQTIKNRK 152

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 61/137 (44%)
Query: 15  GLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGH 74
           GL  KE +IL LGLD AGKTT+L+ LK  + V   PT     E ++   +KF  +D+GG 
Sbjct: 317 GLSNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQ 376
Query: 75  QIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIP 134
              R +W                   +R  E+++            +   L+  NK D+P
Sbjct: 377 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 436
Query: 135 YAASEEELRYHLGLSNF 151
            A    E++  LGL+  
Sbjct: 437 DAMKPHEIQEKLGLTRI 453

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 66/175 (37%), Gaps = 12/175 (6%)
Query: 18  QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
            +E K++ +GLDNAGKTT+L+      +V   PT     EE+ +    F  +D+GG +  
Sbjct: 14  NQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESL 73
Query: 78  RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
           R  W                   ER A +K+                L+  NK D+    
Sbjct: 74  RSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCM 133
Query: 138 SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192
           +  E+  +L LS+                P  +  C  +   G   G +W++  I
Sbjct: 134 TAAEISKYLTLSSIKD------------HPWHIQSCCALTGEGLCQGLEWMTSRI 176

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 59/134 (44%)
Query: 18  QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
            KE +IL LGLD AGKTT+L+ LK  + V   PT     E ++   +KF  +D+GG    
Sbjct: 10  NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKI 69
Query: 78  RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
           R +W                   +R  E+++            +   L+  NK D+P A 
Sbjct: 70  RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 129
Query: 138 SEEELRYHLGLSNF 151
              E++  LGL+  
Sbjct: 130 KPHEIQEKLGLTRI 143

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 59/134 (44%)
Query: 18  QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
            KE +IL LGLD AGKTT+L+ LK  + V   PT     E ++   +KF  +D+GG    
Sbjct: 11  NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKI 70
Query: 78  RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
           R +W                   +R  E+++            +   L+  NK D+P A 
Sbjct: 71  RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 130
Query: 138 SEEELRYHLGLSNF 151
              E++  LGL+  
Sbjct: 131 KPHEIQEKLGLTRI 144

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 68/182 (37%), Gaps = 12/182 (6%)
Query: 9   GVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKA 68
           G L S    +K+ +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  
Sbjct: 18  GSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTV 77
Query: 69  FDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLG 128
           +D+GG    R +W                   ER  ES              +   LV  
Sbjct: 78  WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFA 137
Query: 129 NKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWL 188
           NK D+P A    EL   LGL +  +            R   V      +  G  DG  WL
Sbjct: 138 NKQDMPNAMPVSELTDKLGLQHLRS------------RTWYVQATCATQGTGLYDGLDWL 185
Query: 189 SQ 190
           S 
Sbjct: 186 SH 187

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 70/175 (40%), Gaps = 12/175 (6%)
Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR 78
           +E +IL LGLD AGKTT+L+ L+   +V   PT     E ++   +KF+ +DLGG    R
Sbjct: 1   REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIR 60
Query: 79  RVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAAS 138
             W                   +R   SK                 +V  NK D+  A +
Sbjct: 61  PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 120
Query: 139 EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
             E+   LGL           L D   R  ++F  S  +  G  +  +WL + +K
Sbjct: 121 PSEMANALGLP---------ALKD---RKWQIFKTSATKGTGLDEAMEWLVETLK 163

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 74/187 (39%), Gaps = 16/187 (8%)
Query: 8   YGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFK 67
           +G L S    +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F 
Sbjct: 8   FGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 67
Query: 68  AFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVL 127
            +D+GG    R +W                   +R  E++             +   LV 
Sbjct: 68  VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 127
Query: 128 GNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYG--DGF 185
            NK D+P A +  E+   LGL               ++R    ++ S     G G  +G 
Sbjct: 128 ANKQDLPNAMNAAEITDKLGL--------------HSLRQRHWYIQSTCATSGEGLYEGL 173
Query: 186 KWLSQYI 192
            WLS  I
Sbjct: 174 DWLSNNI 180

>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 70/175 (40%), Gaps = 12/175 (6%)
Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR 78
           +E +IL LGLD AGKTT+L+ L+   +V   PT     E ++   +KF+ +DLGG    R
Sbjct: 3   REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 62
Query: 79  RVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAAS 138
             W                   +R   SK                 +V  NK D+  A +
Sbjct: 63  PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 122
Query: 139 EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
             E+   LGL           L D   R  ++F  S  +  G  +  +WL + +K
Sbjct: 123 SSEMANSLGLP---------ALKD---RKWQIFKTSATKGTGLDEAMEWLVETLK 165

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 57/131 (43%)
Query: 18  QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
           +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    
Sbjct: 14  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 73
Query: 78  RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
           R +W                   ER  E+++            +   LV  NK D+P A 
Sbjct: 74  RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 133
Query: 138 SEEELRYHLGL 148
           +  E+   LGL
Sbjct: 134 NAAEITDKLGL 144

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 57/131 (43%)
Query: 18  QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
           +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    
Sbjct: 15  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 78  RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
           R +W                   ER  E+++            +   LV  NK D+P A 
Sbjct: 75  RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 134
Query: 138 SEEELRYHLGL 148
           +  E+   LGL
Sbjct: 135 NAAEITDKLGL 145

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 59/134 (44%)
Query: 18  QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
            KE +IL LGLD AGKTT+L+ LK  + V   PT     E ++   +KF  +D+GG    
Sbjct: 11  NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKI 70
Query: 78  RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
           R +W                   +R  E+++            +   L+  NK D+P A 
Sbjct: 71  RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 130
Query: 138 SEEELRYHLGLSNF 151
              E++  LGL+  
Sbjct: 131 KPHEIQEKLGLTRI 144

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 57/131 (43%)
Query: 18  QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
           +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    
Sbjct: 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 222
Query: 78  RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
           R +W                   ER  E+++            +   LV  NK D+P A 
Sbjct: 223 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 282
Query: 138 SEEELRYHLGL 148
           +  E+   LGL
Sbjct: 283 NAAEITDKLGL 293

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 16/178 (8%)
Query: 18  QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
           +K+ +IL +GLD AGKTT+L+ +K   +V   PT     E +    I F  +D+GG    
Sbjct: 15  KKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKI 74
Query: 78  RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
           R +W                   ER  ++++            +   LV  NK D+P A 
Sbjct: 75  RPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAM 134
Query: 138 SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYG--DGFKWLSQYIK 193
           S  E+   L L              + +R    F+ S     G G  +GF WL+ ++ 
Sbjct: 135 SAAEVTEKLHL--------------NTIRERNWFIQSTCATRGDGLYEGFDWLTTHLN 178

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 66/176 (37%), Gaps = 12/176 (6%)
Query: 18  QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
            +E K++ +GLDNAGKTT+L+      +V   PT     EE+ I   +F  +D+GG +  
Sbjct: 14  HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESL 73
Query: 78  RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
           R  W                   ER + +++                L+  NK D+    
Sbjct: 74  RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM 133
Query: 138 SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
           +  E+   L L++    +  +              C  +   G   G +W+   +K
Sbjct: 134 TVAEISQFLKLTSIKDHQWHIQ------------ACCALTGEGLCQGLEWMMSRLK 177

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 58/132 (43%)
Query: 20  EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARR 79
           E +IL LGLD AGKTT+L+ LK  + V   PT     E ++   +KF  +D+GG    R 
Sbjct: 3   EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRP 62
Query: 80  VWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASE 139
           +W                   +R  E+++            +   L+  NK D+P A   
Sbjct: 63  LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP 122
Query: 140 EELRYHLGLSNF 151
            E++  LGL+  
Sbjct: 123 HEIQEKLGLTRI 134

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 58/132 (43%)
Query: 20  EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARR 79
           E +IL LGLD AGKTT+L+ LK  + V   PT     E ++   +KF  +D+GG    R 
Sbjct: 2   EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRP 61
Query: 80  VWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASE 139
           +W                   +R  E+++            +   L+  NK D+P A   
Sbjct: 62  LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP 121
Query: 140 EELRYHLGLSNF 151
            E++  LGL+  
Sbjct: 122 HEIQEKLGLTRI 133

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 66/176 (37%), Gaps = 12/176 (6%)
Query: 18  QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
            +E K++ +GLDNAGKTT+L+      +V   PT     EE+ I   +F  +D+GG +  
Sbjct: 14  HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESL 73
Query: 78  RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
           R  W                   ER + +++                L+  NK D+    
Sbjct: 74  RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM 133
Query: 138 SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
           +  E+   L L++    +  +              C  +   G   G +W+   +K
Sbjct: 134 TVAEISQFLKLTSIKDHQWHIQ------------ACCALTGEGLCQGLEWMMSRLK 177

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 57/130 (43%)
Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW 81
           +IL LGLD AGKTT+L+ LK  + V   PT     E ++   +KF  +D+GG    R +W
Sbjct: 2   RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 82  XXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEE 141
                              +R  E+++            +   L+  NK D+P A    E
Sbjct: 62  RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 121
Query: 142 LRYHLGLSNF 151
           ++  LGL+  
Sbjct: 122 IQEKLGLTRI 131

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 57/130 (43%)
Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW 81
           +IL LGLD AGKTT+L+ LK  + V   PT     E ++   +KF  +D+GG    R +W
Sbjct: 2   RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 82  XXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEE 141
                              +R  E+++            +   L+  NK D+P A    E
Sbjct: 62  RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 121
Query: 142 LRYHLGLSNF 151
           ++  LGL+  
Sbjct: 122 IQEKLGLTRI 131

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 18/191 (9%)
Query: 4   LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQYPTSEELSIG 62
           LDWF  +      W++E ++  +GL  +GKTT ++++   +  +   PT      +++ G
Sbjct: 20  LDWFKALF-----WKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKG 74
Query: 63  KIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNV 122
            +  K +D+GG    R +W                   E+   SK              +
Sbjct: 75  NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGI 134
Query: 123 PFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYG 182
           P LVLGNK D+P A  E+EL              K+NL+    R +  +  S   K    
Sbjct: 135 PVLVLGNKRDLPGALDEKELIE------------KMNLSAIQDREICCYSISCKEKDNID 182
Query: 183 DGFKWLSQYIK 193
              +WL Q+ K
Sbjct: 183 ITLQWLIQHSK 193

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 66/176 (37%), Gaps = 12/176 (6%)
Query: 18  QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
            +E K++ +GLDNAGKTT+L+      +V   PT     EE+ I   +F  +D+GG +  
Sbjct: 20  HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESL 79
Query: 78  RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
           R  W                   ER + +++                L+  NK D+    
Sbjct: 80  RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM 139
Query: 138 SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
           +  E+   L L++    +  +              C  +   G   G +W+   +K
Sbjct: 140 TVAEISQFLKLTSIKDHQWHIQ------------ACCALTGEGLCQGLEWMMSRLK 183

>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 69/175 (39%), Gaps = 12/175 (6%)
Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR 78
           +E +IL LGLD AGKTT+L+ L+   +V   PT     E ++   +KF+ +DLGG    R
Sbjct: 6   REXRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 65
Query: 79  RVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAAS 138
             W                   +R   SK                 +V  NK D   A +
Sbjct: 66  PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQAXT 125
Query: 139 EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
             E    LGL           L D   R  ++F  S  +  G  +  +WL + +K
Sbjct: 126 SSEXANSLGLP---------ALKD---RKWQIFKTSATKGTGLDEAXEWLVETLK 168

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 55/133 (41%)
Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR 78
           +E K++ +GLDNAGKTT+L+      +V   PT     EE+ I   +F  +D+GG +  R
Sbjct: 20  QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLR 79
Query: 79  RVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAAS 138
             W                   ER + +++                L+  NK D+    +
Sbjct: 80  SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT 139
Query: 139 EEELRYHLGLSNF 151
             E+   L L++ 
Sbjct: 140 VAEISQFLKLTSI 152

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%)
Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW 81
           +IL LGLD AGKTT+L+ LK  + V   PT     E ++   +KF  +D+GG    R +W
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 82  XXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEE 141
                              +R  E+++            +   L+  NK D+P A    E
Sbjct: 62  RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDAXKPHE 121
Query: 142 LRYHLGLSNF 151
           ++  LGL+  
Sbjct: 122 IQEKLGLTRI 131

>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 76/184 (41%), Gaps = 8/184 (4%)
Query: 6   WFYGVLASLGLWQKEAKI--LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGK 63
           W   +  +LGL   + KI  L LGLDNAGKT++L+ L    +V   PT     E L    
Sbjct: 6   WLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKN 65
Query: 64  IKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVP 123
           I F+ +DLGG    R  W                   +R   +K                
Sbjct: 66  ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSL 125
Query: 124 FLVLGNKIDIPYAASEEELRYHLGLSN-----FTTGKGKVNLADSNVRPLEVFMCSIVRK 178
            L+  NK D+P AASE E+   LG+S+     +T  K      D  V  ++ ++   +R+
Sbjct: 126 LLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMD-WLVERLRE 184
Query: 179 MGYG 182
            G G
Sbjct: 185 QGLG 188

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 55/130 (42%)
Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW 81
           +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61
Query: 82  XXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEE 141
                              ER  E+++            +   LV  NK D+P A +  E
Sbjct: 62  RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 121
Query: 142 LRYHLGLSNF 151
           +   LGL + 
Sbjct: 122 ITDKLGLHSL 131

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 55/130 (42%)
Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW 81
           +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W
Sbjct: 4   RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGLDKIRPLW 63
Query: 82  XXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEE 141
                              ER  E+++            +   LV  NK D+P A +  E
Sbjct: 64  RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 123
Query: 142 LRYHLGLSNF 151
           +   LGL + 
Sbjct: 124 ITDKLGLHSL 133

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 55/134 (41%)
Query: 18  QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
           +K+ +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    
Sbjct: 15  KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRI 74
Query: 78  RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
           R +W                   ER  E               +   L+  NK D+P A 
Sbjct: 75  RPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAM 134
Query: 138 SEEELRYHLGLSNF 151
           +  E+   LGL + 
Sbjct: 135 AISEMTDKLGLQSL 148

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 1/133 (0%)
Query: 18  QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQYPTSEELSIGKIKFKAFDLGGHQI 76
           ++E ++  +GL  +GKTT ++++   +  +   PT      +++ G +  K +D+GG   
Sbjct: 20  KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPR 79
Query: 77  ARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYA 136
            R +W                   E+   SK              +P LVLGNK D+P A
Sbjct: 80  FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139
Query: 137 ASEEELRYHLGLS 149
             E+EL   + LS
Sbjct: 140 LDEKELIEKMNLS 152

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 53/136 (38%)
Query: 18  QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
           ++E ++L LGLDNAGKTT+L     E +    PT     + L     K   +D+GG +  
Sbjct: 14  ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 73
Query: 78  RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
           R  W                   +R  + ++                L+  NK D+P A 
Sbjct: 74  RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 133
Query: 138 SEEELRYHLGLSNFTT 153
           S   +R  L L +  +
Sbjct: 134 SSNAIREVLELDSIRS 149

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 1/133 (0%)
Query: 18  QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQYPTSEELSIGKIKFKAFDLGGHQI 76
           ++E ++  +GL  +GKTT ++++   +  +   PT      +++ G +  K +D+GG   
Sbjct: 20  KEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPR 79
Query: 77  ARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYA 136
            R +W                   E+   S+              +P LVLGNK D+P A
Sbjct: 80  FRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNA 139
Query: 137 ASEEELRYHLGLS 149
             E++L   + LS
Sbjct: 140 LDEKQLIEKMNLS 152

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 53/136 (38%)
Query: 18  QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
           ++E ++L LGLDNAGKTT+L     E +    PT     + L     K   +D+GG +  
Sbjct: 16  ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 75
Query: 78  RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
           R  W                   +R  + ++                L+  NK D+P A 
Sbjct: 76  RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 135
Query: 138 SEEELRYHLGLSNFTT 153
           S   ++  L L +  +
Sbjct: 136 SXNAIQEALELDSIRS 151

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 53/136 (38%)
Query: 18  QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
           ++E ++L LGLDNAGKTT+L     E +    PT     + L     K   +D+GG +  
Sbjct: 16  ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 75
Query: 78  RRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAA 137
           R  W                   +R  + ++                L+  NK D+P A 
Sbjct: 76  RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 135
Query: 138 SEEELRYHLGLSNFTT 153
           S   ++  L L +  +
Sbjct: 136 SCNAIQEALELDSIRS 151

>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 70/186 (37%), Gaps = 20/186 (10%)
Query: 14  LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYP--TSEELSIGKIKFKAFDL 71
           +G  + + +++  GLDN+GKTT+++ +K  +      T       E    G++ F  FD+
Sbjct: 11  MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDM 70
Query: 72  GGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESK-------KXXXXXXXXXXXXNVPF 124
           GG +  R +W                    R    K       K             VPF
Sbjct: 71  GGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPF 130
Query: 125 LVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDG 184
           L   NK+D   A +  EL   L L+          + D    P  +F  + ++  G  +G
Sbjct: 131 LFFANKMDAAGAKTAAELVEILDLTTL--------MGD---HPFVIFASNGLKGTGVHEG 179
Query: 185 FKWLSQ 190
           F WL +
Sbjct: 180 FSWLQE 185

>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 18/180 (10%)
Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQ---PTQYPTSEELSIGKIKFKAFDLGGHQ 75
           KE  +L LGLDN+GKTT+++ LK     Q Q   PT   + E+     + F  FD+ G  
Sbjct: 20  KEVHVLCLGLDNSGKTTIINKLKPSN-AQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQG 78
Query: 76  IARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXN--VPFLVLGNKIDI 133
             R +W                    R   +K+            +  +P L   NK+D+
Sbjct: 79  RYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDL 138
Query: 134 PYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
             A +  ++   L L N               +P  +     ++  G  +G  WL   I+
Sbjct: 139 RDAVTSVKVSQLLCLENIKD------------KPWHICASDAIKGEGLQEGVDWLQDQIQ 186

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 50/132 (37%)
Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW 81
           ++L LGLDNAGKTT+L     E +    PT     + L     K   +D+GG +  R  W
Sbjct: 3   RLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGLKSLRSYW 62
Query: 82  XXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEE 141
                              +R  + ++                L+  NK D+P A S   
Sbjct: 63  RNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNA 122
Query: 142 LRYHLGLSNFTT 153
           ++  L L +  +
Sbjct: 123 IQEALELDSIRS 134

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	193
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	6e-95
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	1e-92
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	2e-68
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	5e-63
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	2e-62
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	1e-58
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	2e-57
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	6e-57
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	7e-56
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	1e-54
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	3e-53
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	9e-53
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	2e-51
1nrj_B	218	SR-beta, signal recognition particle receptor beta	5e-48
2ged_A	193	SR-beta, signal recognition particle receptor beta	9e-48
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	7e-43
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-41
2fh5_B	214	SR-beta, signal recognition particle receptor beta	4e-39
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	3e-37
3llu_A	196	RAS-related GTP-binding protein C; structural geno	8e-23
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	5e-18
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	1e-14
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	1e-12
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	1e-12
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	3e-08
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	5e-07
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	1e-06
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	4e-06
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	4e-06
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	8e-06
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	1e-04
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	2e-04
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	4e-04
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	5e-04
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	7e-04
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	9e-04

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score =  273 bits (701), Expect = 6e-95
 Identities = 115/191 (60%), Positives = 146/191 (76%)

Query: 2   FLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSI 61
           ++   F  VL  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I
Sbjct: 7   WIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTI 66

Query: 62  GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALAN 121
             + F  FDLGGH  ARRVWK+Y   ++ +V+LVD  D ER  ESK+ELD+L++DE +AN
Sbjct: 67  AGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIAN 126

Query: 122 VPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGY 181
           VP L+LGNKID P A SEE LR   GL   TTGKG V+L + N RPLEVFMCS++++ GY
Sbjct: 127 VPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGY 186

Query: 182 GDGFKWLSQYI 192
           G+GF+W++QYI
Sbjct: 187 GEGFRWMAQYI 197

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score =  267 bits (685), Expect = 1e-92
 Identities = 115/190 (60%), Positives = 139/190 (73%), Gaps = 5/190 (2%)

Query: 3   LLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIG 62
           +  WF  VLASLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG
Sbjct: 6   IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIG 65

Query: 63  KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANV 122
            IKF  FDLGGH  ARR+WKDY+ +V+ +V+LVDA D ERF E++ ELDAL +   L +V
Sbjct: 66  NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDV 125

Query: 123 PFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYG 182
           PF++LGNKID P A SE ELR  LGL N T  +          RP+EVFMCS+V + GY 
Sbjct: 126 PFVILGNKIDAPNAVSEAELRSALGLLNTTGSQ-----RIEGQRPVEVFMCSVVMRNGYL 180

Query: 183 DGFKWLSQYI 192
           + F+WLSQYI
Sbjct: 181 EAFQWLSQYI 190

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score =  205 bits (525), Expect = 2e-68
 Identities = 64/190 (33%), Positives = 97/190 (51%), Gaps = 14/190 (7%)

Query: 6   WFYGVLASLGLW--QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGK 63
           W   +  +LGL    ++ ++L LGLDNAGKT++L+ L    +V   PT     E L    
Sbjct: 6   WLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKN 65

Query: 64  IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP 123
           I F+ +DLGG    R  W+ Y++  DAV+Y+VD+ D++R   +K EL ALL ++ L    
Sbjct: 66  ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSL 125

Query: 124 FLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGD 183
            L+  NK D+P AASE E+   LG+S+               R   +   S     G  +
Sbjct: 126 LLIFANKQDLPDAASEAEIAEQLGVSSIMN------------RTWTIVKSSSKTGDGLVE 173

Query: 184 GFKWLSQYIK 193
           G  WL + ++
Sbjct: 174 GMDWLVERLR 183

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score =  191 bits (488), Expect = 5e-63
 Identities = 60/178 (33%), Positives = 91/178 (51%), Gaps = 12/178 (6%)

Query: 16  LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQ 75
              +E +IL LGLD AGKTT+L+ L+   +V   PT     E ++   +KF+ +DLGG  
Sbjct: 3   HMTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLT 62

Query: 76  IARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY 135
             R  W+ YY+  DAV+Y+VD+ D++R   SK EL A+L +E L     +V  NK D+  
Sbjct: 63  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122

Query: 136 AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
           A +  E+   LGL                 R  ++F  S  +  G  +  +WL + +K
Sbjct: 123 AMTSSEMANSLGLPALKD------------RKWQIFKTSATKGTGLDEAMEWLVETLK 168

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score =  190 bits (485), Expect = 2e-62
 Identities = 66/193 (34%), Positives = 92/193 (47%), Gaps = 14/193 (7%)

Query: 1   MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
           M  +  F  +   L    KE +IL LGLD AGKTT+L+ L+   +V  +PT     E LS
Sbjct: 1   MGNI--FSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLS 58

Query: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120
              +K   +DLGG    R  W+ YYA   AV+++VD+ DK+R + + KEL  +L +E L 
Sbjct: 59  YKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQ 118

Query: 121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
           +   LV  NK D P A S  E+   L L                 R   +   S ++  G
Sbjct: 119 DAALLVFANKQDQPGALSASEVSKELNLVELKD------------RSWSIVASSAIKGEG 166

Query: 181 YGDGFKWLSQYIK 193
             +G  WL   IK
Sbjct: 167 ITEGLDWLIDVIK 179

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score =  180 bits (460), Expect = 1e-58
 Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 12/179 (6%)

Query: 14  LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGG 73
           +    +E K++ +GLDNAGKTT+L+      +V   PT     EE+ I   +F  +D+GG
Sbjct: 15  VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGG 74

Query: 74  HQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDI 133
            +  R  W  YY   + V+ +VD+ D+ER + +++EL  +L+ E L     L+  NK D+
Sbjct: 75  QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134

Query: 134 PYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192
               +  E+   L L++                   +  C  +   G   G +W+   +
Sbjct: 135 KECMTVAEISQFLKLTSIKD------------HQWHIQACCALTGEGLCQGLEWMMSRL 181

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score =  177 bits (452), Expect = 2e-57
 Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 12/178 (6%)

Query: 16  LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQ 75
              +E K++ +GLDNAGKTT+L+      +V   PT     EE+ I   +F  +D+GG +
Sbjct: 12  FNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQE 71

Query: 76  IARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY 135
             R  W  YY   + V+ +VD+ D+ER + +++EL  +L+ E L     L+  NK D+  
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131

Query: 136 AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
             +  E+   L L++                   +  C  +   G   G +W+   +K
Sbjct: 132 CMTVAEISQFLKLTSIKD------------HQWHIQACCALTGEGLCQGLEWMMSRLK 177

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score =  176 bits (449), Expect = 6e-57
 Identities = 60/191 (31%), Positives = 91/191 (47%), Gaps = 15/191 (7%)

Query: 3   LLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIG 62
           LL     +        +E +IL LGLDNAGKTTLL  L  E +    PTQ    + +   
Sbjct: 2   LLSILRKLK---SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQ 58

Query: 63  KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANV 122
             K   +D+GG +  R  W+ Y+   D ++Y++D+ D++RF E+ +EL  LL +E L+ V
Sbjct: 59  GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCV 118

Query: 123 PFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYG 182
           P L+  NK D+  AA   E+   L L                 R  ++  CS +   G  
Sbjct: 119 PVLIFANKQDLLTAAPASEIAEGLNLHTIRD------------RVWQIQSCSALTGEGVQ 166

Query: 183 DGFKWLSQYIK 193
           DG  W+ + + 
Sbjct: 167 DGMNWVCKNVN 177

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score =  173 bits (442), Expect = 7e-56
 Identities = 50/184 (27%), Positives = 89/184 (48%), Gaps = 16/184 (8%)

Query: 14  LGLWQKEAKILFLGLDNAGKTTLLHMLK--DERLVQHQPTQYPTSEELSIGKIKFKAFDL 71
           +    KE  +L LGLDN+GKTT+++ LK  + +     PT   + E+     + F  FD+
Sbjct: 15  VPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDM 74

Query: 72  GGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALAN--VPFLVLGN 129
            G    R +W+ YY +  A+++++D+ D+ R   +K+ELD LL+   + +  +P L   N
Sbjct: 75  SGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFAN 134

Query: 130 KIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLS 189
           K+D+  A +  ++   L L N               +P  +     ++  G  +G  WL 
Sbjct: 135 KMDLRDAVTSVKVSQLLCLENIKD------------KPWHICASDAIKGEGLQEGVDWLQ 182

Query: 190 QYIK 193
             I+
Sbjct: 183 DQIQ 186

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score =  170 bits (434), Expect = 1e-54
 Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 16/193 (8%)

Query: 1   MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
           M LL         +   ++E ++L LGLDNAGKTT+L     E +    PT     + L 
Sbjct: 3   MGLLTILK----KMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLE 58

Query: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120
               K   +D+GG +  R  W++Y+   D ++++VD+ D++R  + ++EL +LL +E LA
Sbjct: 59  HRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLA 118

Query: 121 NVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
               L+  NK D+P A S   ++  L L +  +                +  CS V    
Sbjct: 119 GATLLIFANKQDLPGALSCNAIQEALELDSIRS------------HHWRIQGCSAVTGED 166

Query: 181 YGDGFKWLSQYIK 193
              G  WL   I 
Sbjct: 167 LLPGIDWLLDDIS 179

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score =  167 bits (426), Expect = 3e-53
 Identities = 60/185 (32%), Positives = 88/185 (47%), Gaps = 12/185 (6%)

Query: 9   GVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKA 68
           G L S    +K+ +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  
Sbjct: 18  GSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTV 77

Query: 69  FDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLG 128
           +D+GG    R +W+ Y+     ++++VD+ D+ER  ES  EL  +L ++ L +   LV  
Sbjct: 78  WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFA 137

Query: 129 NKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWL 188
           NK D+P A    EL   LGL +  +            R   V      +  G  DG  WL
Sbjct: 138 NKQDMPNAMPVSELTDKLGLQHLRS------------RTWYVQATCATQGTGLYDGLDWL 185

Query: 189 SQYIK 193
           S  + 
Sbjct: 186 SHELS 190

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score =  166 bits (422), Expect = 9e-53
 Identities = 58/186 (31%), Positives = 89/186 (47%), Gaps = 17/186 (9%)

Query: 13  SLGLW----QKEAKILFLGLDNAGKTTLLHMLK-DERLVQHQPTQYPTSEELSIGKIKFK 67
           S GL     ++E ++  +GL  +GKTT ++++   +      PT      +++ G +  K
Sbjct: 11  SSGLVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIK 70

Query: 68  AFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVL 127
            +D+GG    R +W+ Y   V A+VY+VDA D+E+   SK EL  LL    L  +P LVL
Sbjct: 71  LWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL 130

Query: 128 GNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKW 187
           GNK D+P A  E+EL   + LS                R +  +  S   K       +W
Sbjct: 131 GNKRDLPGALDEKELIEKMNLSAIQD------------REICCYSISCKEKDNIDITLQW 178

Query: 188 LSQYIK 193
           L Q+ K
Sbjct: 179 LIQHSK 184

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score =  161 bits (411), Expect = 2e-51
 Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW 81
           +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61

Query: 82  KDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE 141
           + Y+     ++++VD+ D+ER  E+++EL  +L+++ L +   LV  NK D+P A +  E
Sbjct: 62  RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 121

Query: 142 LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
           +   LGL +               R   +         G  +G  WLS  ++
Sbjct: 122 ITDKLGLHSLRH------------RNWYIQATCATSGDGLYEGLDWLSNQLR 161

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score =  155 bits (393), Expect = 5e-48
 Identities = 40/188 (21%), Positives = 74/188 (39%), Gaps = 13/188 (6%)

Query: 12  ASLGLWQKEAK--ILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAF 69
           + +G+ QK  +  I+  G  N+GKT+LL +L  + +     +Q P S     G       
Sbjct: 2   SHMGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGS-GVTLV 60

Query: 70  DLGGHQIARRVWKDYY----AKVDAVVYLVD-AYDKERFAESKKELDALLSDEAL---AN 121
           D  GH   R    DY       V  ++++VD   D ++   + + L  +LS         
Sbjct: 61  DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG 120

Query: 122 VPFLVLGNKIDIPYAASEEELRYHLG--LSNFTTGKGKVNLADSNVRPLEVFMCSIVRKM 179
           +  L+  NK ++  A    +++  L   +      + K           E +  + +  +
Sbjct: 121 IDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVL 180

Query: 180 GYGDGFKW 187
              DGFK+
Sbjct: 181 QSTDGFKF 188

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score =  153 bits (389), Expect = 9e-48
 Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 11/154 (7%)

Query: 5   DWFYGVLASL--GLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIG 62
           +W    L     G    +  I+  G  N+GKT+LL +L  + +     +Q P S     G
Sbjct: 31  EWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDG 90

Query: 63  KIKFKAFDLGGHQIARRVWKDYY----AKVDAVVYLVD-AYDKERFAESKKELDALLSDE 117
                  D  GH   R    DY       V  ++++VD   D ++   + + L  +LS  
Sbjct: 91  S-GVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSIT 149

Query: 118 AL---ANVPFLVLGNKIDIPYAASEEELRYHLGL 148
                  +  L+  NK ++  A    +++  L  
Sbjct: 150 ESSCENGIDILIACNKSELFTARPPSKIKDALES 183

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score =  145 bits (367), Expect = 7e-43
 Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 12/177 (6%)

Query: 17  WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQI 76
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG   
Sbjct: 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 221

Query: 77  ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA 136
            R +W+ Y+     ++++VD+ D+ER  E+++EL  +L+++ L +   LV  NK D+P A
Sbjct: 222 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 281

Query: 137 ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
            +  E+   LGL +               R   +         G  +G  WLS  ++
Sbjct: 282 MNAAEITDKLGLHSLRH------------RNWYIQATCATSGDGLYEGLDWLSNQLR 326

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score =  132 bits (333), Expect = 4e-39
 Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 7/137 (5%)

Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGK---IKFKAFDLGGHQ 75
            +  +LF+GL ++GKT L   L   +    Q +   +S    +           DL GH+
Sbjct: 6   SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE 65

Query: 76  IAR-RVWKDYYAKVDAVVYLVDAYDKERFAESKKE-LDALLSDEALAN--VPFLVLGNKI 131
             R ++   + +   AVV++VD+   +R  +   E L  +L D          L+  NK 
Sbjct: 66  SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQ 125

Query: 132 DIPYAASEEELRYHLGL 148
           DI  A S + ++  L  
Sbjct: 126 DIAMAKSAKLIQQQLEK 142

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score =  127 bits (320), Expect = 3e-37
 Identities = 35/208 (16%), Positives = 72/208 (34%), Gaps = 40/208 (19%)

Query: 9   GVLASLGLWQKE--AKILFLGLDNAGKTTLLHMLKDERL-----------VQHQPTQY-- 53
           G ++++    +E   KI++ G   +GKTT L  +  +              + + T +  
Sbjct: 1   GSMSTINFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFD 60

Query: 54  ---PTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKEL 110
                  E+   K +F  + + G        K     VD +V++ D+    R   + + +
Sbjct: 61  FLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAP-NRLRANAESM 119

Query: 111 DALLSD-----EALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNV 165
             +  +       L +VP ++  NK D+P A   E +R  +               +   
Sbjct: 120 RNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP-------------EGKF 166

Query: 166 RPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
               V         G  +  K +S+ + 
Sbjct: 167 P---VLEAVATEGKGVFETLKEVSRLVL 191

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 89.6 bits (222), Expect = 8e-23
 Identities = 23/125 (18%), Positives = 53/125 (42%), Gaps = 8/125 (6%)

Query: 16  LWQKEAKILFLGLDNAGKTT----LLHMLKDERLVQHQPTQYPTSEELSI-GKIKFKAFD 70
               + +IL +GL  +GK++    + H +     +  + T     +++S    + F+ +D
Sbjct: 16  FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWD 75

Query: 71  LGGHQIARRVWKD---YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVL 127
             G         D    +    A++Y++DA D    A ++  +    + +   ++ F V 
Sbjct: 76  FPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVF 135

Query: 128 GNKID 132
            +K+D
Sbjct: 136 IHKVD 140

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 78.9 bits (194), Expect = 5e-18
 Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 11/135 (8%)

Query: 20  EAKILFLGLDNAGKTT----LLHMLKDERLVQHQPTQYPTSEEL-SIGKIKFKAFDLGGH 74
            +K+L +G   +GK++    +          +   T       L  +G +    +D GG 
Sbjct: 3   GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQ 62

Query: 75  Q-----IARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA-NVPFLVLG 128
                    +     +  V  ++++ D    E   + +    AL      + +    VL 
Sbjct: 63  DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLL 122

Query: 129 NKIDIPYAASEEELR 143
           +K+D+      EEL 
Sbjct: 123 HKMDLVQLDKREELF 137

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227

 Score = 68.5 bits (167), Expect = 1e-14
 Identities = 20/129 (15%), Positives = 39/129 (30%), Gaps = 19/129 (14%)

Query: 70  DLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLS----DEALANVPFL 125
             G         +     VD  +Y+ +A   +R  E + E   +++        +  P L
Sbjct: 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRH-EWQDEFSHIMAMTDPAFGSSGRPLL 166

Query: 126 VLG-NKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDG 184
           VL               L + L L+                 P  V         G+ +G
Sbjct: 167 VLSCISQGDVKRMPCFYLAHELHLNLLN-------------HPWLVQDTEAETLTGFLNG 213

Query: 185 FKWLSQYIK 193
            +W+ + ++
Sbjct: 214 IEWILEEVE 222

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 64.0 bits (155), Expect = 1e-12
 Identities = 18/128 (14%), Positives = 35/128 (27%), Gaps = 17/128 (13%)

Query: 70  DLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALL---SDEALANVPFLV 126
             G         +     VD  +Y+ +A   +R     +    +         +  P LV
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV 252

Query: 127 LG-NKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGF 185
           L               L + L L+                 P  V         G+ +G 
Sbjct: 253 LSCISQGDVKRMPCFYLAHELHLNLLN-------------HPWLVQDTEAETLTGFLNGI 299

Query: 186 KWLSQYIK 193
           +W+ + ++
Sbjct: 300 EWILEEVE 307

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 63.9 bits (155), Expect = 1e-12
 Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 23  ILFLGLDNAGKTT----LLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR 78
           +L +G+   GK++    + H ++    +  + T  P+ E  S   I     +L G     
Sbjct: 2   VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYF 60

Query: 79  RVWKD---YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKID 132
               D    +  V A+VY++D+ D+   A +   +    + +   ++   VL +K+D
Sbjct: 61  EPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVD 117

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 51.5 bits (123), Expect = 3e-08
 Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 20/128 (15%)

Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-------------PTQYPTSEELSIGKIK 65
           +E K+  +G   AGKT+LL  L  E     +             P       +  + +  
Sbjct: 40  QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECL 99

Query: 66  FKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA-NVPF 124
           F  +D GG +I     + +     + VY++   D    +     L  +   E      P 
Sbjct: 100 FHFWDFGGQEIMHASHQFFMT--RSSVYML-LLDSRTDSNKHYWLRHI---EKYGGKSPV 153

Query: 125 LVLGNKID 132
           +V+ NKID
Sbjct: 154 IVVMNKID 161

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402

 Score = 47.9 bits (113), Expect = 5e-07
 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 10/99 (10%)

Query: 45  LVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD--AYDK-- 100
           L     T      +  + K+ F  FD+GG +  RR W   +  V A++++V   +Y+   
Sbjct: 198 LRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVI 257

Query: 101 ------ERFAESKKELDALLSDEALANVPFLVLGNKIDI 133
                  R  E+     ++ ++  L  +  ++  NK D+
Sbjct: 258 REDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327

 Score = 46.6 bits (110), Expect = 1e-06
 Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 10/96 (10%)

Query: 48  HQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA---------- 97
             PT         +  + F+  D+GG +  RR W   +  V ++++LV            
Sbjct: 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVES 210

Query: 98  YDKERFAESKKELDALLSDEALANVPFLVLGNKIDI 133
            ++ R  ESK     +++     N   ++  NK D+
Sbjct: 211 DNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353

 Score = 45.5 bits (107), Expect = 4e-06
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 48  HQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD--AYDK----- 100
              T        +   + FK FD+GG +  R+ W   +  V A+++ V    YD      
Sbjct: 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAED 236

Query: 101 ---ERFAESKKELDALLSDEALANVPFLVLGNKIDI 133
               R  ES K  D++ +++   +   ++  NK D+
Sbjct: 237 EEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354

 Score = 45.1 bits (106), Expect = 4e-06
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 10/93 (10%)

Query: 51  TQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYD----------K 100
            Q+    E       ++ FD+GG +  RR W   +  V AV++     +          K
Sbjct: 170 IQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQK 229

Query: 101 ERFAESKKELDALLSDEALANVPFLVLGNKIDI 133
            R  E+K+  D +L         F++  NK DI
Sbjct: 230 NRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 262

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362

 Score = 44.3 bits (104), Expect = 8e-06
 Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 10/86 (11%)

Query: 58  ELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD--AYDK--------ERFAESK 107
           +  I  + FK  D+GG +  R+ W + +  V ++++LV    +D+         R  ES 
Sbjct: 195 DFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESL 254

Query: 108 KELDALLSDEALANVPFLVLGNKIDI 133
              + ++++   +NV  ++  NK D+
Sbjct: 255 NIFETIVNNRVFSNVSIILFLNKTDL 280

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 16/180 (8%), Positives = 45/180 (25%), Gaps = 22/180 (12%)

Query: 18  QKEAKILFLGLDNAGKTTLLHMLKDERLVQ------------HQPTQYPTSEELSIGKIK 65
                +   G   +GK++ ++ L+     +             +   Y      ++    
Sbjct: 67  SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWD 126

Query: 66  FKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFL 125
                         + K  + + D  + +       RF ++  ++   +S        F 
Sbjct: 127 LPGIGSTNFPPDTYLEKMKFYEYDFFIIISA----TRFKKNDIDIAKAISMM---KKEFY 179

Query: 126 VLGNKIDIPYAASEEELRYHLGLSNFTTGKGKV---NLADSNVRPLEVFMCSIVRKMGYG 182
            +  K+D       +                        ++ +    +F+ S      Y 
Sbjct: 180 FVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYD 239

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 28/135 (20%)

Query: 30  NAGKTTLL-HMLKDER-LVQHQP-TQYPT----SEELSIGKIKFKAFDLGG--------- 73
           N GK+TLL  +L ++R +V   P T   T    SEE+ I  I F+  D  G         
Sbjct: 253 NVGKSTLLNRLLNEDRAIVTDIPGT---TRDVISEEIVIRGILFRIVDTAGVRSETNDLV 309

Query: 74  HQIA-RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKID 132
            ++   R  +    K D V++++DA          +E   +L  E + N  +LV+ NK+D
Sbjct: 310 ERLGIERTLQ-EIEKADIVLFVLDASS-----PLDEEDRKIL--ERIKNKRYLVVINKVD 361

Query: 133 IPYAASEEELRYHLG 147
           +    +EEE++  LG
Sbjct: 362 VVEKINEEEIKNKLG 376

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 24/136 (17%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKA--FDLGGHQIARR 79
           KI+  G    GK++ L  L        +     T     +G + F+     + G +   +
Sbjct: 30  KIVLAGDAAVGKSSFLMRLCKNEF---RENISAT-----LG-VDFQMKTLIVDGERTVLQ 80

Query: 80  VW------------KDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVL 127
           +W            K Y+ K D V+ L D   ++ F   ++ +D +  D A   VP +++
Sbjct: 81  LWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMI-EDAAHETVPIMLV 139

Query: 128 GNKIDIPYAASEEELR 143
           GNK DI   A+ E  +
Sbjct: 140 GNKADIRDTAATEGQK 155

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462

 Score = 39.0 bits (92), Expect = 5e-04
 Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 40/152 (26%)

Query: 30  NAGKTTLL-HMLKDER-LVQHQP-TQYPT----SEELSIGKIKFKAFD------------ 70
           N GK++LL    + +R +V   P T   T      +L +G I  +  D            
Sbjct: 234 NVGKSSLLNAWSQSDRAIVTDLPGT---TRDVVESQLVVGGIPVQVLDTAGIRETSDQVE 290

Query: 71  -LGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGN 129
            +G   + R   +      D V+  +DA               +   E + + P +++ N
Sbjct: 291 KIG---VERS--RQAANTADLVLLTIDAAT-----GWTTGDQEIY--EQVKHRPLILVMN 338

Query: 130 KIDIPYAASEEELRYHLGLSNF-----TTGKG 156
           KID+        L Y   ++          +G
Sbjct: 339 KIDLVEKQLITSLEYPENITQIVHTAAAQKQG 370

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 15/125 (12%)

Query: 20  EAKILFLGLDNAGKTTLLHMLKDER---LVQHQPT-------QYPTSEELSIGKIKFKAF 69
             K++ +G   +GKTTLL  L   +   L     T             +     +    +
Sbjct: 2   RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61

Query: 70  DLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSD-EALA-NVPFLVL 127
           D  G +        +       +YL   YD  +       +   L + +A A + P +++
Sbjct: 62  DFAGREEFYSTHPHFMT--QRALYLA-VYDLSKGQAEVDAMKPWLFNIKARASSSPVILV 118

Query: 128 GNKID 132
           G  +D
Sbjct: 119 GTHLD 123

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 37.7 bits (88), Expect = 9e-04
 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 7/117 (5%)

Query: 22  KILFLGLDNAGKTTLLHM-LKDERLVQHQPTQ----YPTSEELSIGKIKFKAFDLGGHQI 76
           K++ +G    GKTT +   L  E   ++  T     +P     + G IKF  +D  G + 
Sbjct: 17  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76

Query: 77  ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDI 133
              +   YY +    + + D   +  +         L       N+P ++ GNK+DI
Sbjct: 77  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL--VRVCENIPIVLCGNKVDI 131

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	193
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	100.0
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	100.0
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	100.0
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	100.0
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	100.0
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	100.0
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	100.0
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	100.0
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	100.0
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	100.0
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	100.0
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	100.0
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	100.0
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.98
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.97
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.97
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.97
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.97
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.97
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.97
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.97
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.97
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.97
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.97
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.97
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.97
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.97
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.97
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.97
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.97
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.97
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.97
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.96
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.96
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.96
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.96
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.96
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.96
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.96
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.96
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.96
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.96
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.96
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.96
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.96
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.96
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.96
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.96
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.96
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.96
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.96
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.96
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.96
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.96
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.96
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.96
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.96
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.96
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.96
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.96
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.96
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.96
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.96
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.96
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.96
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.96
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.96
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.96
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.96
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.96
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.96
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.96
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.96
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.96
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.96
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.96
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.96
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.96
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.96
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.96
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.96
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.96
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.96
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.96
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.96
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.95
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.95
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.95
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.95
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.95
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.95
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.95
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.95
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.95
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.95
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.95
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.95
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.95
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.94
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.94
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.89
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.94
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.94
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.93
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.93
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.93
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.93
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.93
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.93
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.93
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.93
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.93
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.92
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.92
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.92
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.92
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.92
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.92
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.92
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.92
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.91
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.91
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.91
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.91
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.9
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.9
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.9
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.9
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.9
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.9
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.9
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.89
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.89
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.89
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.89
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.89
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.89
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.89
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.88
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.88
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.88
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.88
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.88
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.88
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.88
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.88
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.87
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.87
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.87
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.87
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.87
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.87
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.87
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.86
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.86
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.86
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.86
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.86
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.86
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.86
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.86
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.85
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.85
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.85
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.85
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.84
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.84
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.84
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.83
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.82
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.82
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.81
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.81
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.81
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.81
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.8
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.8
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.79
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.77
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.77
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.76
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.76
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.76
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.76
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.74
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.74
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.73
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.72
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.69
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.68
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.66
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.66
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.65
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.65
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.64
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.64
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.63
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.63
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.63
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.62
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.6
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.59
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.58
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.56
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.53
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.51
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.49
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.39
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.21
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.15
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.14
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.99
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.97
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.92
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.91
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.89
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.88
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.85
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.79
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.77
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.74
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.71
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.56
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.52
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.47
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.45
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.24
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.24
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.98
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.98
1tue_A	212	Replication protein E1; helicase, replication, E1E	97.93
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.88
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.86
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.81
2xxa_A	433	Signal recognition particle protein; protein trans	97.79
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.79
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.75
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.73
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.73
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.72
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.72
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.71
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.69
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.66
3end_A	307	Light-independent protochlorophyllide reductase ir	97.66
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.65
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.64
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.64
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.63
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.63
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.62
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.62
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.61
1g6h_A	257	High-affinity branched-chain amino acid transport	97.58
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.57
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.57
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.57
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.57
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.57
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.57
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.56
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.56
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.54
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.54
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.53
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.52
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.51
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.51
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.5
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.5
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.5
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.5
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.49
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.48
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.48
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.48
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.47
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.47
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.47
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.47
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.47
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	97.47
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.47
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.47
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.46
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.46
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.46
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.45
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.43
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.43
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.43
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.42
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.42
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.42
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.41
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.41
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.41
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.4
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.4
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.39
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.39
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.39
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.39
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.39
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.39
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.39
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.39
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.38
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.38
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.38
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.37
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.37
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.37
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.37
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.37
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.36
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.36
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.36
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.36
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.36
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.35
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.35
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.35
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.35
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.35
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.34
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.34
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.34
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.33
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.33
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.32
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.31
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.31
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.31
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.3
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.3
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.3
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.29
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.29
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.28
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.27
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.27
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.27
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	97.27
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.26
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.26
3bos_A	242	Putative DNA replication factor; P-loop containing	97.26
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.26
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	97.25
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.24
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.24
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.22
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.22
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.22
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.22
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.21
1via_A	175	Shikimate kinase; structural genomics, transferase	97.2
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.2
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.2
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.19
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.18
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.17
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.17
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.16
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.16
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.15
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.14
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.13
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.12
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.12
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.11
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.1
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.09
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.09
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.08
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.08
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.08
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.08
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.06
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.06
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.06
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.05
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.05
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.05
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.05
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	97.04
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.04
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.03
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.03
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.02
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.02
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.02
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.02
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.01
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.0
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.99
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.99
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.98
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.98
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.98
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.98
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.98
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.97
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.97
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.96
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.96
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.96
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.95
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.94
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.94
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.93
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.92
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.91
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.91
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.9
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.9
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.89
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.89
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.88
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.88
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.88
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.88
2qgz_A	308	Helicase loader, putative primosome component; str	96.87
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.87
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.87
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.87
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.86
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.86
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.86
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.85
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.84
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.84
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.82
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.81
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.81
2og2_A	359	Putative signal recognition particle receptor; nuc	96.8
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.8
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.79
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.79
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.79
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.78
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.78
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.77
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.76
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.75
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.74
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.73
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.72
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.71
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.71
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.69
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.69
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.68
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.67
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.67
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.66
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.66
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.66
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	96.66
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.66
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.64
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.63
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.63
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.62
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.62
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.6
3co5_A	143	Putative two-component system transcriptional RES	96.59
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.58
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.58
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.56
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.56
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.55
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.52
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.52
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.5
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.49
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.48
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.46
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.45
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.44
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.41
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.41
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.41
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.41
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.38
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.38
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.38
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.38
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.37
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.37
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.36
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.36
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.35
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.33
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.32
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.31
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.29
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.29

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=100.00  E-value=8.1e-37  Score=217.27  Aligned_cols=192  Identities=61%  Similarity=1.063  Sum_probs=149.6

Q ss_pred             chHHH----HHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhh
Q 029437            2 FLLDW----FYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA   77 (193)
Q Consensus         2 ~~~~~----~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~   77 (193)
                      +|+.|    +...+.+.....+.++|+++|++|||||||++++.+..+....||.+.....+.+++..+.+|||||++.+
T Consensus         3 ~~~~~~~~~~~~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~   82 (198)
T 1f6b_A            3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQA   82 (198)
T ss_dssp             ----------CHHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhh
Confidence            46777    76777777777788999999999999999999999988887778888888888899999999999999999


Q ss_pred             HhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCc
Q 029437           78 RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGK  157 (193)
Q Consensus        78 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  157 (193)
                      +..+..+++.+|++++|+|+++++++.....++..++......+.|+++++||+|+......+++.+.++......+...
T Consensus        83 ~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  162 (198)
T 1f6b_A           83 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGS  162 (198)
T ss_dssp             CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSC
T ss_pred             HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccc
Confidence            88888899999999999999999999999999999876655578999999999999877778888877765543334333


Q ss_pred             cccCCCCCcceEEEEeeeecCCChhhHHHhhhhhcC
Q 029437          158 VNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       158 ~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~~  193 (193)
                      .++.+.......+++|||++|.|++++|++|.+.++
T Consensus       163 ~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l~  198 (198)
T 1f6b_A          163 VSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID  198 (198)
T ss_dssp             CCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTCC
T ss_pred             cccccccCceEEEEEEECCCCCCHHHHHHHHHHhcC
Confidence            334333335678999999999999999999998764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=100.00  E-value=2.8e-35  Score=208.05  Aligned_cols=186  Identities=63%  Similarity=1.057  Sum_probs=142.3

Q ss_pred             chHHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhH
Q 029437            2 FLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW   81 (193)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~   81 (193)
                      +|+.++...+.......+.++|+++|++|||||||++++.+..+....+|.+.....+.+++..+.+|||||++.++..+
T Consensus         5 ~~~~~~~~~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~   84 (190)
T 1m2o_B            5 DIFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW   84 (190)
T ss_dssp             -------------------CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSG
T ss_pred             HHHHHHHHHHHHhhccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHH
Confidence            56788888887777777889999999999999999999999998888889888888889999999999999999999888


Q ss_pred             HhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccC
Q 029437           82 KDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLA  161 (193)
Q Consensus        82 ~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (193)
                      ..+++.+|++++|+|++++++++....++..++......+.|+++++||+|+......+++.+.++... ....+.  + 
T Consensus        85 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~--~-  160 (190)
T 1m2o_B           85 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTGSQR--I-  160 (190)
T ss_dssp             GGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSS-CCC-----C-
T ss_pred             HHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCcc-cccccc--c-
Confidence            889999999999999999999999999999987665557899999999999987777778777766543 111111  1 


Q ss_pred             CCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          162 DSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       162 ~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                       .....+.+++|||++|.|++++|++|.+.+
T Consensus       161 -~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l  190 (190)
T 1m2o_B          161 -EGQRPVEVFMCSVVMRNGYLEAFQWLSQYI  190 (190)
T ss_dssp             -CSSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             -cccceEEEEEeECCcCCCHHHHHHHHHhhC
Confidence             112457899999999999999999998764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=100.00  E-value=9.9e-34  Score=195.12  Aligned_cols=160  Identities=33%  Similarity=0.585  Sum_probs=139.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCCh
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDK  100 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~  100 (193)
                      +||+++|++|+|||||++++.+..+....||.+.....+.+.+..+.+|||||++.++..+..+++.+|++++|+|++++
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   80 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   80 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence            58999999999999999999988888888888888888888889999999999999999989999999999999999999


Q ss_pred             hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCC
Q 029437          101 ERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG  180 (193)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  180 (193)
                      +++.....++..++......+.|+++++||+|+.......++.+.++....            ....+++++|||++|.|
T Consensus        81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~~~g  148 (164)
T 1r8s_A           81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL------------RHRNWYIQATCATSGDG  148 (164)
T ss_dssp             GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC------------SSCCEEEEECBTTTTBT
T ss_pred             HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccc------------cCccEEEEEcccCCCcC
Confidence            999999999998877655678999999999999876666777776664431            01246799999999999


Q ss_pred             hhhHHHhhhhhc
Q 029437          181 YGDGFKWLSQYI  192 (193)
Q Consensus       181 v~el~~~i~~~~  192 (193)
                      ++++|++|.+.+
T Consensus       149 i~~l~~~l~~~i  160 (164)
T 1r8s_A          149 LYEGLDWLSNQL  160 (164)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH
Confidence            999999998875

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=100.00  E-value=1.3e-33  Score=197.99  Aligned_cols=163  Identities=36%  Similarity=0.643  Sum_probs=140.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA   97 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~   97 (193)
                      ...++|+++|++|||||||++++.+..+....||.+.....+.+++..+.+|||||++.++..+..++..+|++++|+|+
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~   93 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDS   93 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEET
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEEC
Confidence            67799999999999999999999998877777888877778888899999999999999999989999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeec
Q 029437           98 YDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVR  177 (193)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  177 (193)
                      ++++++.....++..++......+.|+++++||+|+......+++.+.++....            ....+.+++|||++
T Consensus        94 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~  161 (181)
T 1fzq_A           94 ADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTI------------RDRVWQIQSCSALT  161 (181)
T ss_dssp             TCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGC------------CSSCEEEEECCTTT
T ss_pred             cCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhc------------cCCceEEEEccCCC
Confidence            999999999999988876555578999999999999876666777766654321            11346899999999


Q ss_pred             CCChhhHHHhhhhhc
Q 029437          178 KMGYGDGFKWLSQYI  192 (193)
Q Consensus       178 g~gv~el~~~i~~~~  192 (193)
                      |.|++++|++|.+.+
T Consensus       162 g~gi~~l~~~l~~~~  176 (181)
T 1fzq_A          162 GEGVQDGMNWVCKNV  176 (181)
T ss_dssp             CTTHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999999998765

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=100.00  E-value=2.1e-33  Score=197.49  Aligned_cols=163  Identities=32%  Similarity=0.565  Sum_probs=140.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA   97 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~   97 (193)
                      ++.++|+++|++|||||||++++.+.......||.+.....+.+++..+.+|||||++.+...+..+++.+|++++|+|+
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~   95 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS   95 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEET
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEEC
Confidence            56799999999999999999999988866677888888888888899999999999999999888999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeec
Q 029437           98 YDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVR  177 (193)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  177 (193)
                      +++++++.+..++..++......+.|+++++||+|+......+++.+.+.....            ....+++++|||++
T Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~  163 (186)
T 1ksh_A           96 ADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSI------------RSHHWRIQGCSAVT  163 (186)
T ss_dssp             TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC------------CSSCEEEEECCTTT
T ss_pred             cCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhc------------cCCceEEEEeeCCC
Confidence            999999999999999877655578999999999999877677777776654321            01346899999999


Q ss_pred             CCChhhHHHhhhhhc
Q 029437          178 KMGYGDGFKWLSQYI  192 (193)
Q Consensus       178 g~gv~el~~~i~~~~  192 (193)
                      |.|+++++++|.+.+
T Consensus       164 ~~gi~~l~~~l~~~i  178 (186)
T 1ksh_A          164 GEDLLPGIDWLLDDI  178 (186)
T ss_dssp             CTTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999999998764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.4e-33  Score=197.40  Aligned_cols=173  Identities=28%  Similarity=0.539  Sum_probs=142.0

Q ss_pred             HHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhc
Q 029437            6 WFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYY   85 (193)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~   85 (193)
                      ++..++.+.  .++.++|+++|++|||||||++++.+..+....||.+.....+.+++..+.+|||||++.+...+..++
T Consensus         4 ~~~~~~~~~--~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   81 (187)
T 1zj6_A            4 LFTRIWRLF--NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYY   81 (187)
T ss_dssp             HHHHHHHHH--TTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHH
T ss_pred             HHHHHHHhc--CCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHh
Confidence            444444432  356799999999999999999999988888777888888888888999999999999999988888899


Q ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCC
Q 029437           86 AKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNV  165 (193)
Q Consensus        86 ~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (193)
                      +.+|++++|+|++++++++....++..+.......+.|+++|+||+|+......+++.+.+.....            ..
T Consensus        82 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~------------~~  149 (187)
T 1zj6_A           82 TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSI------------KD  149 (187)
T ss_dssp             TTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGC------------CS
T ss_pred             cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhh------------cC
Confidence            999999999999999999999999999876544568999999999999876677777776654321            01


Q ss_pred             cceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          166 RPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       166 ~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ..+.+++|||++|.|+++++++|.+.+
T Consensus       150 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (187)
T 1zj6_A          150 HQWHIQACCALTGEGLCQGLEWMMSRL  176 (187)
T ss_dssp             SCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             CCcEEEEccCCCCcCHHHHHHHHHHHH
Confidence            346899999999999999999998765

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=100.00  E-value=2.6e-33  Score=194.18  Aligned_cols=164  Identities=36%  Similarity=0.610  Sum_probs=142.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD   96 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d   96 (193)
                      ..+.++|+++|++|+|||||++++.+..+....||.+.....+.+++..+.+|||||++.+...+..+++.+|++++|+|
T Consensus         4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   83 (171)
T 1upt_A            4 MTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVD   83 (171)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEE
Confidence            45678999999999999999999999998888888888888888899999999999999999988899999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeee
Q 029437           97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIV  176 (193)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  176 (193)
                      +++++++.....++..++......+.|+++++||+|+.......++.+.+.....            ....+.+++|||+
T Consensus        84 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~  151 (171)
T 1upt_A           84 SCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPAL------------KDRKWQIFKTSAT  151 (171)
T ss_dssp             TTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGC------------TTSCEEEEECCTT
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhc------------cCCceEEEECcCC
Confidence            9999999999999998877655578999999999999877667777777664431            0134689999999


Q ss_pred             cCCChhhHHHhhhhhc
Q 029437          177 RKMGYGDGFKWLSQYI  192 (193)
Q Consensus       177 ~g~gv~el~~~i~~~~  192 (193)
                      +|.|+++++++|.+.+
T Consensus       152 ~~~gi~~l~~~l~~~i  167 (171)
T 1upt_A          152 KGTGLDEAMEWLVETL  167 (171)
T ss_dssp             TCTTHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHH
Confidence            9999999999998765

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=2.1e-33  Score=196.86  Aligned_cols=176  Identities=36%  Similarity=0.573  Sum_probs=144.7

Q ss_pred             HHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhh
Q 029437            5 DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDY   84 (193)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~   84 (193)
                      .++...+...-..++.++|+++|++|||||||++++.+.++....+|.+.....+.+++..+.+|||||+..+...+..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~   82 (183)
T 1moz_A            3 NIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCY   82 (183)
T ss_dssp             HHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGT
T ss_pred             hHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHH
Confidence            45556655443226789999999999999999999999888778889888888888889999999999999988888888


Q ss_pred             cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCC
Q 029437           85 YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSN  164 (193)
Q Consensus        85 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (193)
                      +..+|++++|+|++++++++....++..++......+.|+++++||+|+......+++.+.++....            .
T Consensus        83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~------------~  150 (183)
T 1moz_A           83 YADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVEL------------K  150 (183)
T ss_dssp             TTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTC------------C
T ss_pred             hccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccc------------c
Confidence            9999999999999999999999999999876555578999999999999877677777777664431            1


Q ss_pred             CcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          165 VRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ...+++++|||++|.|+++++++|.+.+
T Consensus       151 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  178 (183)
T 1moz_A          151 DRSWSIVASSAIKGEGITEGLDWLIDVI  178 (183)
T ss_dssp             SSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred             CCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence            1346899999999999999999998765

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=100.00  E-value=1.9e-33  Score=198.88  Aligned_cols=165  Identities=35%  Similarity=0.583  Sum_probs=138.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD   96 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d   96 (193)
                      .++.++|+++|++|||||||++++.+..+....||.+.....+.+.+..+.+|||||++.+...+..+++.+|++++|+|
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D  105 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD  105 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            45679999999999999999999999888877788888778888899999999999999998888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeee
Q 029437           97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIV  176 (193)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  176 (193)
                      +++++++.....++..++......+.|+++|+||+|+......+++.+.++....            ....+.+++|||+
T Consensus       106 ~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~SA~  173 (192)
T 2b6h_A          106 SNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHL------------RSRTWYVQATCAT  173 (192)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC------------SSCCEEEEECBTT
T ss_pred             CCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccc------------cCCceEEEECcCC
Confidence            9999999999999999877655678999999999999876667777777665431            1134679999999


Q ss_pred             cCCChhhHHHhhhhhcC
Q 029437          177 RKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       177 ~g~gv~el~~~i~~~~~  193 (193)
                      +|.|++++|++|.+.+.
T Consensus       174 ~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          174 QGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             TTBTHHHHHHHHHHHTT
T ss_pred             CcCCHHHHHHHHHHHHh
Confidence            99999999999988763

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=100.00  E-value=3.4e-33  Score=195.76  Aligned_cols=167  Identities=29%  Similarity=0.541  Sum_probs=140.1

Q ss_pred             hCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           14 LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        14 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      .....+.++|+++|++|+|||||++++.+.++....+|.+.....+.+++..+.+|||||++.+...+..+++.+|++++
T Consensus        15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   94 (181)
T 2h17_A           15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIV   94 (181)
T ss_dssp             ------CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred             cCCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            33456789999999999999999999999998777788888888888899999999999999999888899999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      |+|++++++++.+..++..++......+.|+++++||+|+......+++.+.+.....            ....+.+++|
T Consensus        95 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~  162 (181)
T 2h17_A           95 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSI------------KDHQWHIQAC  162 (181)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC------------CSSCEEEEEC
T ss_pred             EEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccc------------cCCceEEEEc
Confidence            9999999999999999999876544578999999999999876677777776654331            1134689999


Q ss_pred             eeecCCChhhHHHhhhhhc
Q 029437          174 SIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~~  192 (193)
                      ||++|.|++++|++|.+.+
T Consensus       163 Sa~~g~gi~~l~~~l~~~l  181 (181)
T 2h17_A          163 CALTGEGLCQGLEWMMSRL  181 (181)
T ss_dssp             BTTTTBTHHHHHHHHHTC-
T ss_pred             cCCCCcCHHHHHHHHHhhC
Confidence            9999999999999998764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=100.00  E-value=6.8e-34  Score=200.50  Aligned_cols=163  Identities=37%  Similarity=0.608  Sum_probs=142.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA   97 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~   97 (193)
                      ++.++|+++|++|+|||||++++.+.++....||.+.....+.+++..+.+|||||++.+...+..+++.+|++++|+|+
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~   99 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDS   99 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEET
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeC
Confidence            67899999999999999999999998888888898888888888999999999999998888888888999999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeec
Q 029437           98 YDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVR  177 (193)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  177 (193)
                      ++++++.....++..++......+.|+++|+||+|+......+++.+.+.....            ....+++++|||++
T Consensus       100 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~  167 (189)
T 2x77_A          100 TDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSI------------MNRTWTIVKSSSKT  167 (189)
T ss_dssp             TCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC------------CSSCEEEEECCTTT
T ss_pred             CCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhc------------cCCceEEEEccCCC
Confidence            999999999999999887666678999999999999877666777776654331            11346899999999


Q ss_pred             CCChhhHHHhhhhhc
Q 029437          178 KMGYGDGFKWLSQYI  192 (193)
Q Consensus       178 g~gv~el~~~i~~~~  192 (193)
                      |.|+++++++|.+.+
T Consensus       168 ~~gi~~l~~~l~~~i  182 (189)
T 2x77_A          168 GDGLVEGMDWLVERL  182 (189)
T ss_dssp             CTTHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHH
Confidence            999999999998765

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=100.00  E-value=1.2e-32  Score=194.02  Aligned_cols=165  Identities=33%  Similarity=0.534  Sum_probs=141.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      .++.++|+|+|++|+|||||++++.+..+. ...+|.+.....+...+..+.+|||||++.+...+..++..+|++++|+
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   98 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV   98 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEE
Confidence            456899999999999999999999988876 3567888877778888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI  175 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  175 (193)
                      |+++++++..+..++..++......+.|+++|+||+|+......+++.+.++....            ......+++|||
T Consensus        99 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~SA  166 (188)
T 1zd9_A           99 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAI------------QDREICCYSISC  166 (188)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGC------------CSSCEEEEECCT
T ss_pred             ECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhh------------ccCCeeEEEEEC
Confidence            99999999999999999877555578999999999999876666777766654331            113467999999


Q ss_pred             ecCCChhhHHHhhhhhcC
Q 029437          176 VRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       176 ~~g~gv~el~~~i~~~~~  193 (193)
                      ++|.|++++|++|.+.++
T Consensus       167 ~~g~gv~~l~~~l~~~~~  184 (188)
T 1zd9_A          167 KEKDNIDITLQWLIQHSK  184 (188)
T ss_dssp             TTCTTHHHHHHHHHHTCC
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999999988763

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=3.9e-33  Score=200.34  Aligned_cols=158  Identities=20%  Similarity=0.230  Sum_probs=120.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee--EEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE--ELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      .++++||+|+|++|+|||||++++..+.|.. ..||.+....  .+..  ..+.+.+|||+|+++++.+...+++.++++
T Consensus        10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~   89 (216)
T 4dkx_A           10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA   89 (216)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred             CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence            4567999999999999999999999998876 4577765432  3333  347899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC--CCCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP--YAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++|+|++++++|+++..|+..+... ..+++|+++|+||+|+.  +.++.++..+....                 ..+.
T Consensus        90 ilv~di~~~~Sf~~i~~~~~~i~~~-~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~-----------------~~~~  151 (216)
T 4dkx_A           90 VVVYDITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKE-----------------LNVM  151 (216)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCE
T ss_pred             EEEeecchhHHHHHHHHHHHHHHHh-cCCCCeEEEEeeccchHhcCcccHHHHhhHHHH-----------------hCCe
Confidence            9999999999999999999988643 33689999999999997  34455443222110                 1246


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++|||++|.||+++|+.|.+.+
T Consensus       152 ~~e~SAktg~nV~e~F~~i~~~i  174 (216)
T 4dkx_A          152 FIETSAKAGYNVKQLFRRVAAAL  174 (216)
T ss_dssp             EEEEBTTTTBSHHHHHHHHHHHC
T ss_pred             eEEEeCCCCcCHHHHHHHHHHHH
Confidence            79999999999999999998765

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.2e-32  Score=191.04  Aligned_cols=166  Identities=30%  Similarity=0.556  Sum_probs=137.6

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCC--ccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDER--LVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      ...+.++|+++|++|+|||||++++.+..  .....+|.+.....+.+++..+.+|||||++.+...+..+++.+|++++
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   96 (190)
T 2h57_A           17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIF   96 (190)
T ss_dssp             ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEE
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            34577999999999999999999999887  2345678888888888888999999999999999988899999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCC--CCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437           94 LVDAYDKERFAESKKELDALLSDEAL--ANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      |+|++++.++..+..++..++.....  .+.|+++|+||+|+......+++.+.+....+         .   ...+.++
T Consensus        97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~---~~~~~~~  164 (190)
T 2h57_A           97 VIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENI---------K---DKPWHIC  164 (190)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGC---------C---SSCEEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhc---------c---CCceEEE
Confidence            99999999999999999998876544  68999999999999877677777666643220         0   1346899


Q ss_pred             EeeeecCCChhhHHHhhhhhcC
Q 029437          172 MCSIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       172 ~~Sa~~g~gv~el~~~i~~~~~  193 (193)
                      +|||++|.|++++|++|.+.++
T Consensus       165 ~~Sa~~~~gi~~l~~~l~~~i~  186 (190)
T 2h57_A          165 ASDAIKGEGLQEGVDWLQDQIQ  186 (190)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHC-
T ss_pred             EccCCCCcCHHHHHHHHHHHHH
Confidence            9999999999999999988763

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=100.00  E-value=3e-32  Score=193.32  Aligned_cols=165  Identities=32%  Similarity=0.594  Sum_probs=137.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc--CCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH--QPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL   94 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v   94 (193)
                      .....+|+|+|++|||||||++++.+..+...  .+|.+.....+......+.+|||||++.+..++..+++.+|++++|
T Consensus        14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v   93 (199)
T 4bas_A           14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFV   93 (199)
T ss_dssp             --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEE
Confidence            45778999999999999999999999988764  7888888888888999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCC-------CCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437           95 VDAYDKERFAESKKELDALLSDEAL-------ANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRP  167 (193)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (193)
                      +|+++++++..+..++..++.....       .+.|+++|+||+|+......+++.+.++....-           ....
T Consensus        94 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-----------~~~~  162 (199)
T 4bas_A           94 VDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLM-----------GDHP  162 (199)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHH-----------TTSC
T ss_pred             EECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhc-----------cCCe
Confidence            9999999999999999988764222       389999999999998777777777777643210           0134


Q ss_pred             eEEEEeeeecCCChhhHHHhhhhhc
Q 029437          168 LEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       168 ~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +.+++|||++|.|++++|++|.+.+
T Consensus       163 ~~~~~~Sa~~g~gv~~l~~~l~~~~  187 (199)
T 4bas_A          163 FVIFASNGLKGTGVHEGFSWLQETA  187 (199)
T ss_dssp             EEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             eEEEEeeCCCccCHHHHHHHHHHHH
Confidence            6899999999999999999998764

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.98  E-value=1.5e-31  Score=203.54  Aligned_cols=163  Identities=33%  Similarity=0.592  Sum_probs=140.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA   97 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~   97 (193)
                      ++.++|+|+|++|+|||||++++.+..+....||.+.....+...+..+.+|||||++.+..+...+++.+|++|+|+|+
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~  242 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS  242 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEET
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            35679999999999999999999999988877899988888999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeec
Q 029437           98 YDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVR  177 (193)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  177 (193)
                      +++.++..+..++..++......++|+++|+||+|+......+++...++....            ....+.++++||++
T Consensus       243 ~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~------------~~~~~~~~~vSAk~  310 (329)
T 3o47_A          243 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL------------RHRNWYIQATCATS  310 (329)
T ss_dssp             TCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTC------------CSSCEEEEECBTTT
T ss_pred             CchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhh------------hcCCCEEEEEECCC
Confidence            999999999999999987766679999999999999887778888888876552            12457899999999


Q ss_pred             CCChhhHHHhhhhhc
Q 029437          178 KMGYGDGFKWLSQYI  192 (193)
Q Consensus       178 g~gv~el~~~i~~~~  192 (193)
                      |.|++++|++|.+.+
T Consensus       311 g~gi~el~~~l~~~l  325 (329)
T 3o47_A          311 GDGLYEGLDWLSNQL  325 (329)
T ss_dssp             TBTHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHH
Confidence            999999999998875

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.97  E-value=1.1e-30  Score=180.11  Aligned_cols=156  Identities=19%  Similarity=0.176  Sum_probs=102.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccee-EEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSE-ELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD   96 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d   96 (193)
                      .+||+++|++|+|||||++++.+..+....++.+.... .+..  ....+.+||+||+..+......++..+|++++|+|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS   81 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence            57999999999999999999998776655555444322 2233  34678999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEee
Q 029437           97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS  174 (193)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  174 (193)
                      ++++++++.+..|+..+.......+.|+++++||+|+...  ...++...... .                ..+++++||
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~~~~~S  144 (166)
T 3q72_A           82 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-V----------------FDCKFIETS  144 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHH-H----------------TTCEEEECB
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHH-H----------------hCCcEEEec
Confidence            9999999999999999887666678999999999999743  23332221111 1                125789999


Q ss_pred             eecCCChhhHHHhhhhhc
Q 029437          175 IVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       175 a~~g~gv~el~~~i~~~~  192 (193)
                      |++|.|++++|++|.+.+
T Consensus       145 a~~~~gi~~l~~~l~~~~  162 (166)
T 3q72_A          145 AALHHNVQALFEGVVRQI  162 (166)
T ss_dssp             GGGTBSHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHH
Confidence            999999999999998865

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.97  E-value=5.7e-30  Score=183.76  Aligned_cols=177  Identities=23%  Similarity=0.262  Sum_probs=123.4

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeC---CEEEEEEEcCChhhhHh-hHHhhcccCCEE
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIG---KIKFKAFDLGGHQIARR-VWKDYYAKVDAV   91 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~D~~G~~~~~~-~~~~~~~~~d~v   91 (193)
                      .....++|+++|++|+|||||++++.+..+....++.......+.++   ...+.+|||||+..+.. ++..+++.+|++
T Consensus         3 ~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   82 (214)
T 2fh5_B            3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV   82 (214)
T ss_dssp             -----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence            34567899999999999999999999998887666666666566665   67899999999999987 778889999999


Q ss_pred             EEEEECCChh-hHHHHHHHHHHHHcC--CCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCcc---------ccCCCccc
Q 029437           92 VYLVDAYDKE-RFAESKKELDALLSD--EALANVPFLVLGNKIDIPYAASEEELRYHLGLSNF---------TTGKGKVN  159 (193)
Q Consensus        92 l~v~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~~~~~~  159 (193)
                      ++|+|+++.. ++....+++...+..  ....+.|+++|+||+|+......+++.+.+....-         ..+.....
T Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~  162 (214)
T 2fh5_B           83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS  162 (214)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC----------
T ss_pred             EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCc
Confidence            9999999854 466677777666432  22357999999999999866555544333321100         00000001


Q ss_pred             cCCCC-------------CcceEEEEeeeecC------CChhhHHHhhhhhc
Q 029437          160 LADSN-------------VRPLEVFMCSIVRK------MGYGDGFKWLSQYI  192 (193)
Q Consensus       160 ~~~~~-------------~~~~~~~~~Sa~~g------~gv~el~~~i~~~~  192 (193)
                      +.+..             ...+.+++|||++|      .|++++|++|.+.+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~  214 (214)
T 2fh5_B          163 TAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA  214 (214)
T ss_dssp             --CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred             cccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence            11000             01678999999999      99999999998754

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.97  E-value=7.4e-30  Score=177.36  Aligned_cols=158  Identities=16%  Similarity=0.140  Sum_probs=112.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcc--eeEEEeCC--EEEEEEEcCChhh--hHhhHHhhcccCCEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPT--SEELSIGK--IKFKAFDLGGHQI--ARRVWKDYYAKVDAV   91 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~--~~~~~~~~~~~~d~v   91 (193)
                      +..++|+++|++|+|||||++++.+..+....++.+..  ...+..++  ..+.+|||||+..  +..+...+++.+|++
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            45689999999999999999999998877655555544  33444544  5789999999987  455667788899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++|+|++++.+++.+..|+..+.......+.|+++|+||+|+...  ...++...... .                ..++
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-~----------------~~~~  144 (175)
T 2nzj_A           82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAV-V----------------FDCK  144 (175)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-H----------------HTSE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHH-H----------------cCCe
Confidence            999999999999999988888766544568999999999999743  33333221110 0                1247


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++|||++|.|++++|++|.+.+
T Consensus       145 ~~~~Sa~~g~gi~~l~~~l~~~~  167 (175)
T 2nzj_A          145 FIETSATLQHNVAELFEGVVRQL  167 (175)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHHHH
Confidence            89999999999999999998764

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.97  E-value=2.4e-30  Score=178.44  Aligned_cols=158  Identities=17%  Similarity=0.226  Sum_probs=122.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee-EEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE-ELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL   94 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v   94 (193)
                      +.++|+++|++|||||||++++.+..+.. ..+|.+.... .+..  ....+.+||+||+..+......+++.+|++++|
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            56899999999999999999999887654 3344443222 2222  356899999999999988888899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      +|++++.+++.+..++..+.......+.|+++++||+|+...  ...++....... .               ...++++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~---------------~~~~~~~  145 (167)
T 1c1y_A           82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ-W---------------CNCAFLE  145 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-T---------------TSCEEEE
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHH-c---------------cCCcEEE
Confidence            999999999998888887765444568999999999999732  233333222111 1               1357899


Q ss_pred             eeeecCCChhhHHHhhhhhc
Q 029437          173 CSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +||++|.|+++++++|.+.+
T Consensus       146 ~Sa~~~~gi~~l~~~l~~~i  165 (167)
T 1c1y_A          146 SSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             CBTTTTBSHHHHHHHHHHHH
T ss_pred             ecCCCCCCHHHHHHHHHHHH
Confidence            99999999999999998765

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.97  E-value=1.8e-29  Score=177.38  Aligned_cols=156  Identities=20%  Similarity=0.212  Sum_probs=121.5

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      ..+..+||+++|++|||||||++++.+..+.. ..+|.+.....+.+.+  +.+.+|||+|++.+.     +++.+|+++
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i   90 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV   90 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence            35678999999999999999999999988765 3455443444555555  677889999998776     567799999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC----CCCCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP----YAASEEELRYHLGLSNFTTGKGKVNLADSNVRPL  168 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (193)
                      +|+|++++.+++.+..|+..+.......+.|+++++||+|+.    .....++...... ..               ..+
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~-~~---------------~~~  154 (184)
T 3ihw_A           91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLST-DL---------------KRC  154 (184)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHH-HT---------------TTC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHH-Hc---------------CCC
Confidence            999999999999999998888765555689999999999984    3333333322221 11               225


Q ss_pred             EEEEeeeecCCChhhHHHhhhhhc
Q 029437          169 EVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       169 ~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .+++|||++|.|++++|++|.+.+
T Consensus       155 ~~~e~Sa~~~~gv~~lf~~l~~~i  178 (184)
T 3ihw_A          155 TYYETCATYGLNVERVFQDVAQKV  178 (184)
T ss_dssp             EEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             eEEEecCCCCCCHHHHHHHHHHHH
Confidence            789999999999999999998764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.97  E-value=1.4e-29  Score=174.99  Aligned_cols=158  Identities=20%  Similarity=0.273  Sum_probs=123.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      .++.++|+++|++|+|||||++++.+..+.. ..++.+...  ..+...  ...+.+||+||++.+......+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            3567899999999999999999999887665 334554332  333333  57899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++|+|++++.++..+..|+..+... ..++.|+++++||+|+..  ....++.......                 ..+.
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~  144 (170)
T 1r2q_A           83 IVVYDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSYADD-----------------NSLL  144 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCccccccCHHHHHHHHHH-----------------cCCe
Confidence            9999999999999998888877543 236899999999999963  2333333222111                 1257


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++++||++|.|+++++++|.+.+
T Consensus       145 ~~~~Sa~~g~gi~~l~~~i~~~~  167 (170)
T 1r2q_A          145 FMETSAKTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHTS
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999999999998876

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.97  E-value=1.5e-29  Score=174.45  Aligned_cols=158  Identities=20%  Similarity=0.298  Sum_probs=121.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce-eEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      ++.++|+++|++|+|||||++++.+..+... .+|..... ..+...+  ..+.+||+||+..+......+++.+|++++
T Consensus         2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            4568999999999999999999998886543 34443332 2334444  689999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      |+|+++++++..+..|+..+.......+.|+++++||+|+..  ....++.......                 ..++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~  144 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQ-----------------WNVNYV  144 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTCEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHH-----------------cCCeEE
Confidence            999999999999988888886654446899999999999963  3333443332211                 124789


Q ss_pred             EeeeecCCChhhHHHhhhhhc
Q 029437          172 MCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       172 ~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++||++|.|++++|++|.+.+
T Consensus       145 ~~Sa~~~~gi~~l~~~l~~~i  165 (168)
T 1u8z_A          145 ETSAKTRANVDKVFFDLMREI  165 (168)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHH
T ss_pred             EeCCCCCCCHHHHHHHHHHHH
Confidence            999999999999999998765

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.97  E-value=6.8e-30  Score=180.78  Aligned_cols=158  Identities=22%  Similarity=0.260  Sum_probs=121.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-----------CCCCCccee-----EEEeCCEEEEEEEcCChhhhHhh
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-----------QPTQYPTSE-----ELSIGKIKFKAFDLGGHQIARRV   80 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----------~~t~~~~~~-----~~~~~~~~~~~~D~~G~~~~~~~   80 (193)
                      ....+||+++|++|||||||++.+.+......           .+|.+....     .+......+.+|||||++.+...
T Consensus        11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~   90 (198)
T 3t1o_A           11 REINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS   90 (198)
T ss_dssp             TEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence            45679999999999999999987765443322           123222211     22233578999999999999999


Q ss_pred             HHhhcccCCEEEEEEECC------ChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccC
Q 029437           81 WKDYYAKVDAVVYLVDAY------DKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTG  154 (193)
Q Consensus        81 ~~~~~~~~d~vl~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  154 (193)
                      +..+++.+|++++|+|++      +.+++..+..|+..+  .....+.|+++|+||+|+......++..+......    
T Consensus        91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~--~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~----  164 (198)
T 3t1o_A           91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY--GLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEG----  164 (198)
T ss_dssp             HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT--TCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTC----
T ss_pred             HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh--ccccCCCCEEEEEEchhcccccCHHHHHHHHHhcC----
Confidence            999999999999999999      456677777777666  23457899999999999988777777766654322    


Q ss_pred             CCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          155 KGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                                  ...+++|||++|.|++++|++|.+.+
T Consensus       165 ------------~~~~~~~Sa~~~~gv~~l~~~l~~~i  190 (198)
T 3t1o_A          165 ------------KFPVLEAVATEGKGVFETLKEVSRLV  190 (198)
T ss_dssp             ------------CSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred             ------------CceEEEEecCCCcCHHHHHHHHHHHH
Confidence                        12789999999999999999998764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.97  E-value=2e-29  Score=179.44  Aligned_cols=158  Identities=18%  Similarity=0.241  Sum_probs=120.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      .+..++|+++|++|+|||||++++.+..+.. ..+|.+.  ....+.+++  ..+.+|||||++.+...+..+++.+|++
T Consensus        26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (201)
T 2hup_A           26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA  105 (201)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence            4567999999999999999999999888754 4455543  344555555  6899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcce-
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPL-  168 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  168 (193)
                      ++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+..  ....++..+....                 ..+ 
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~  167 (201)
T 2hup_A          106 ILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEH-----------------YDIL  167 (201)
T ss_dssp             EEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCS
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHH-----------------cCCC
Confidence            99999999999999888887775432 36899999999999973  3344443332211                 113 


Q ss_pred             EEEEeeeecCCChhhHHHhhhhhc
Q 029437          169 EVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       169 ~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .+++|||++|.|++++|++|.+.+
T Consensus       168 ~~~~~SA~~g~gi~~l~~~l~~~i  191 (201)
T 2hup_A          168 CAIETSAKDSSNVEEAFLRVATEL  191 (201)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHH
Confidence            789999999999999999998764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.97  E-value=1.8e-29  Score=178.07  Aligned_cols=160  Identities=20%  Similarity=0.220  Sum_probs=125.5

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee---EEEeC-----------CEEEEEEEcCChhhhHhh
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE---ELSIG-----------KIKFKAFDLGGHQIARRV   80 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~---~~~~~-----------~~~~~~~D~~G~~~~~~~   80 (193)
                      .....++|+|+|++|+|||||++++.+..+.. ..+|.+....   .+...           ...+.+|||||++.+...
T Consensus         7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   86 (195)
T 3bc1_A            7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL   86 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred             ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence            35667999999999999999999999887654 4456554433   33333           468999999999999999


Q ss_pred             HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCcc
Q 029437           81 WKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKV  158 (193)
Q Consensus        81 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~  158 (193)
                      ...+++.+|++++|+|++++.++..+..|+..+.......+.|+++++||+|+..  ....++..+....          
T Consensus        87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----------  156 (195)
T 3bc1_A           87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK----------  156 (195)
T ss_dssp             HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHH----------
T ss_pred             HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH----------
Confidence            9999999999999999999999999888888876654446899999999999974  3333333222110          


Q ss_pred             ccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          159 NLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       159 ~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                             ..++++++||++|.|++++|++|.+.+
T Consensus       157 -------~~~~~~~~Sa~~~~~v~~l~~~l~~~~  183 (195)
T 3bc1_A          157 -------YGIPYFETSAANGTNISHAIEMLLDLI  183 (195)
T ss_dssp             -------HTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             -------cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence                   113579999999999999999998754

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=3.7e-29  Score=176.77  Aligned_cols=158  Identities=20%  Similarity=0.213  Sum_probs=124.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee--EEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE--ELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      +++.++|+|+|++|+|||||++++.+..+.. ..++.+....  .+..  ....+.+|||||++.+......+++.+|++
T Consensus        20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   99 (192)
T 2fg5_A           20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA   99 (192)
T ss_dssp             -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence            4678999999999999999999999988653 4566664432  2222  457899999999999999888999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++|+|++++.++..+..|+..+... ...+.|+++|+||+|+..  ....++..+....                 ..+.
T Consensus       100 ilV~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~  161 (192)
T 2fg5_A          100 VIVYDITKQDSFYTLKKWVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDAKEYAES-----------------IGAI  161 (192)
T ss_dssp             EEEEETTCTHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT-----------------TTCE
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHH-----------------cCCE
Confidence            9999999999999988888777543 235899999999999973  3344443333211                 1257


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++|||++|.|+++++++|.+.+
T Consensus       162 ~~~~Sa~~~~gi~~l~~~l~~~i  184 (192)
T 2fg5_A          162 VVETSAKNAINIEELFQGISRQI  184 (192)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHTC
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHH
Confidence            89999999999999999998865

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.97  E-value=5.7e-29  Score=173.84  Aligned_cols=160  Identities=22%  Similarity=0.294  Sum_probs=124.2

Q ss_pred             CCCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc--eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCC
Q 029437           15 GLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVD   89 (193)
Q Consensus        15 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d   89 (193)
                      +..+..++|+++|++|+|||||++++.+..+... .++.+..  ...+...  ...+.+|||||++.+...+..+++.+|
T Consensus         7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   86 (181)
T 2efe_B            7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   86 (181)
T ss_dssp             ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred             CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence            3456779999999999999999999998887653 3455443  3334444  468999999999999998889999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437           90 AVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRP  167 (193)
Q Consensus        90 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (193)
                      ++++|+|++++.+++.+..|+..+... ..++.|+++++||+|+...  ...++..+....                 ..
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~  148 (181)
T 2efe_B           87 AAIIVFDVTNQASFERAKKWVQELQAQ-GNPNMVMALAGNKSDLLDARKVTAEDAQTYAQE-----------------NG  148 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------TT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECCcccccccCCHHHHHHHHHH-----------------cC
Confidence            999999999999999988888887653 2358999999999999642  233333332211                 12


Q ss_pred             eEEEEeeeecCCChhhHHHhhhhhc
Q 029437          168 LEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       168 ~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++++++||++|.|++++|++|.+.+
T Consensus       149 ~~~~~~Sa~~g~gi~~l~~~l~~~~  173 (181)
T 2efe_B          149 LFFMETSAKTATNVKEIFYEIARRL  173 (181)
T ss_dssp             CEEEECCSSSCTTHHHHHHHHHHTC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4789999999999999999998865

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.97  E-value=1e-29  Score=175.05  Aligned_cols=157  Identities=18%  Similarity=0.262  Sum_probs=122.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCc-ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYP-TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVYL   94 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~-~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v   94 (193)
                      ++++|+++|++|+|||||++++.+..+... .++... ....+...+  ..+.+|||||++.+..+...+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            568999999999999999999998876643 334332 233344444  5699999999999999888899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      +|++++.+++.+..++..+.......+.|+++++||+|+..  ....++...... .                ..+++++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~~~~  144 (167)
T 1kao_A           82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE-E----------------WGCPFME  144 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-H----------------HTSCEEE
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHH-H----------------hCCCEEE
Confidence            99999999999999988887655556899999999999863  222222221111 0                1135799


Q ss_pred             eeeecCCChhhHHHhhhhhc
Q 029437          173 CSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +||++|.|+++++++|.+.+
T Consensus       145 ~Sa~~~~gi~~l~~~l~~~~  164 (167)
T 1kao_A          145 TSAKSKTMVDELFAEIVRQM  164 (167)
T ss_dssp             ECTTCHHHHHHHHHHHHHHH
T ss_pred             ecCCCCcCHHHHHHHHHHHH
Confidence            99999999999999998765

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.97  E-value=2.1e-29  Score=175.41  Aligned_cols=160  Identities=19%  Similarity=0.269  Sum_probs=123.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      ....++|+++|++|+|||||++++.+..+.. ..++.+..  ...+..++  ..+.+|||||++.+......+++.+|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            4567899999999999999999999887654 34555543  33444554  6899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcC---CCCCCCcEEEEEeCCCCCC-CCCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437           92 VYLVDAYDKERFAESKKELDALLSD---EALANVPFLVLGNKIDIPY-AASEEELRYHLGLSNFTTGKGKVNLADSNVRP  167 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~pviiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (193)
                      ++|+|++++.++..+..|+..+...   ....+.|+++++||+|+.. ....++..+.... .               ..
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-~---------------~~  147 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD-N---------------GD  147 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH-T---------------TC
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh-c---------------CC
Confidence            9999999999998888777776432   2236889999999999973 3344444333220 1               22


Q ss_pred             eEEEEeeeecCCChhhHHHhhhhhc
Q 029437          168 LEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       168 ~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ..++++||++|.|++++|++|.+.+
T Consensus       148 ~~~~~~Sa~~~~gi~~l~~~l~~~~  172 (177)
T 1wms_A          148 YPYFETSAKDATNVAAAFEEAVRRV  172 (177)
T ss_dssp             CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999998764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.97  E-value=9.2e-30  Score=178.31  Aligned_cols=159  Identities=16%  Similarity=0.209  Sum_probs=123.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      ..+.++|+++|++|+|||||++++.+..+.. ..++.... ......++  ..+.+|||||++.+......+++.+|+++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   94 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   94 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            4578999999999999999999999887664 33444433 23333444  45778999999999999899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      +|+|++++.+++.+..|+..+.......+.|+++|+||+|+..  ....++...... .                ..+++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~-~----------------~~~~~  157 (183)
T 3kkq_A           95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT-K----------------YNIPY  157 (183)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH-H----------------HTCCE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH-H----------------hCCeE
Confidence            9999999999999999888886654557899999999999974  333333222211 0                11458


Q ss_pred             EEeeee-cCCChhhHHHhhhhhc
Q 029437          171 FMCSIV-RKMGYGDGFKWLSQYI  192 (193)
Q Consensus       171 ~~~Sa~-~g~gv~el~~~i~~~~  192 (193)
                      ++|||+ +|.|++++|++|.+.+
T Consensus       158 ~~~Sa~~~~~~v~~l~~~l~~~i  180 (183)
T 3kkq_A          158 IETSAKDPPLNVDKTFHDLVRVI  180 (183)
T ss_dssp             EEEBCSSSCBSHHHHHHHHHHHH
T ss_pred             EEeccCCCCCCHHHHHHHHHHHH
Confidence            999999 9999999999998865

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.97  E-value=1.8e-29  Score=177.47  Aligned_cols=159  Identities=19%  Similarity=0.301  Sum_probs=120.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCCc-ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQYP-TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~t~~~-~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      ..+++|+++|++|||||||++++.+..+.... +|... ....+...+  ..+.+|||||++.+..+...++..+|++++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            35689999999999999999999988866533 33332 223334444  458889999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      |+|++++.++..+..|+..+.......+.|+++++||+|+.......+....+....                ..+++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~~  145 (189)
T 4dsu_A           82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSY----------------GIPFIET  145 (189)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHH----------------TCCEEEC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHc----------------CCeEEEE
Confidence            999999999999999988887655567899999999999974332222222221111                1357999


Q ss_pred             eeecCCChhhHHHhhhhhc
Q 029437          174 SIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~~  192 (193)
                      ||++|.|++++|++|.+.+
T Consensus       146 Sa~~g~gi~~l~~~l~~~~  164 (189)
T 4dsu_A          146 SAKTRQGVDDAFYTLVREI  164 (189)
T ss_dssp             CTTTCTTHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHH
Confidence            9999999999999998764

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=2.5e-29  Score=173.74  Aligned_cols=156  Identities=20%  Similarity=0.317  Sum_probs=122.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      ..++|+++|++|+|||||++++.+..+.. ..++.+..  ...+..+  ...+.+||+||++.+......+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            46899999999999999999999888664 44555543  3334444  3689999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-----CCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-----ASEEELRYHLGLSNFTTGKGKVNLADSNVRPL  168 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (193)
                      |+|++++.++..+..|+..+.... ..+.|+++++||+|+...     ...++...... .                ..+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-~----------------~~~  143 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAE-E----------------KGL  143 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHH-H----------------HTC
T ss_pred             EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHH-H----------------cCC
Confidence            999999999999988888776543 368999999999999743     12222111110 0                124


Q ss_pred             EEEEeeeecCCChhhHHHhhhhhc
Q 029437          169 EVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       169 ~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .++++||++|.|++++|++|.+.+
T Consensus       144 ~~~~~Sa~~~~gi~~l~~~l~~~i  167 (170)
T 1ek0_A          144 LFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHH
Confidence            789999999999999999998876

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.96  E-value=2.7e-29  Score=173.62  Aligned_cols=156  Identities=18%  Similarity=0.207  Sum_probs=111.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcccc---CCCCCcceeEEEeCC--EEEEEEEcCChhhhHh-hHHhhcccCCEEEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQH---QPTQYPTSEELSIGK--IKFKAFDLGGHQIARR-VWKDYYAKVDAVVY   93 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~t~~~~~~~~~~~~--~~~~~~D~~G~~~~~~-~~~~~~~~~d~vl~   93 (193)
                      .++|+++|++|+|||||++++.+..+...   .++.......+...+  ..+.+||+||+..+.. +...+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            37999999999999999999987665432   223334444445544  6788999999988876 55667788999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC--CCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP--YAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      |+|++++++++.+..|+..+.......++|+++++||+|+.  .....++.......                 ..++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~  144 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT-----------------LSCKHI  144 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCEEE
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHH-----------------cCCcEE
Confidence            99999999999999999988765555689999999999997  33343333222211                 124789


Q ss_pred             EeeeecCCChhhHHHhhhhhc
Q 029437          172 MCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       172 ~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +|||++|.|++++|++|.+.+
T Consensus       145 ~~Sa~~~~~v~~l~~~l~~~i  165 (169)
T 3q85_A          145 ETSAALHHNTRELFEGAVRQI  165 (169)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHH
T ss_pred             EecCccCCCHHHHHHHHHHHH
Confidence            999999999999999998865

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.96  E-value=6e-29  Score=174.50  Aligned_cols=158  Identities=20%  Similarity=0.260  Sum_probs=123.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      .+..++|+++|++|||||||++++.+..+.. ..++.+.  ....+..++  ..+.+|||||++.+...+..+++.+|++
T Consensus         7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   86 (186)
T 2bme_A            7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   86 (186)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence            4567999999999999999999999888764 3445443  234444554  6899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++|+|++++.+++.+..|+..+... ...+.|+++++||+|+..  .....+.......                 ..+.
T Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~  148 (186)
T 2bme_A           87 LLVYDITSRETYNALTNWLTDARML-ASQNIVIILCGNKKDLDADREVTFLEASRFAQE-----------------NELM  148 (186)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHH-----------------cCCE
Confidence            9999999999999888888776442 235899999999999963  3333333222111                 1257


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++|||++|.|++++|++|.+.+
T Consensus       149 ~~~~Sa~~~~gi~~l~~~l~~~~  171 (186)
T 2bme_A          149 FLETSALTGENVEEAFVQCARKI  171 (186)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEecCCCCCCHHHHHHHHHHHH
Confidence            89999999999999999998754

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.96  E-value=7.5e-29  Score=174.69  Aligned_cols=159  Identities=21%  Similarity=0.282  Sum_probs=122.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhH-hhHHhhcccCCE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIAR-RVWKDYYAKVDA   90 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~-~~~~~~~~~~d~   90 (193)
                      .+..++|+++|++|||||||++++.+..+.. ..++.+.  ....+..++  ..+.+|||||++.+. .+...+++.+|+
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~   96 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA   96 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence            4567999999999999999999999888764 3455543  334455554  689999999999988 788888999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437           91 VVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPL  168 (193)
Q Consensus        91 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (193)
                      +++|+|++++.++..+..|+..+.......+.|+++|+||+|+...  ...++...... .                ..+
T Consensus        97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~----------------~~~  159 (189)
T 1z06_A           97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD-T----------------HSM  159 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-H----------------TTC
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHH-H----------------cCC
Confidence            9999999999999999888888876554568999999999999632  23333222111 0                124


Q ss_pred             EEEEeeeecC---CChhhHHHhhhhhc
Q 029437          169 EVFMCSIVRK---MGYGDGFKWLSQYI  192 (193)
Q Consensus       169 ~~~~~Sa~~g---~gv~el~~~i~~~~  192 (193)
                      .++++||++|   .|++++|++|.+.+
T Consensus       160 ~~~~~Sa~~~~~~~~i~~l~~~l~~~i  186 (189)
T 1z06_A          160 PLFETSAKNPNDNDHVEAIFMTLAHKL  186 (189)
T ss_dssp             CEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred             EEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence            6899999999   99999999998765

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.96  E-value=2.4e-29  Score=175.31  Aligned_cols=159  Identities=18%  Similarity=0.224  Sum_probs=121.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCC--cceeEEEeCC---EEEEEEEcCChhhhHhhHHhhcccCCE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQY--PTSEELSIGK---IKFKAFDLGGHQIARRVWKDYYAKVDA   90 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~---~~~~~~D~~G~~~~~~~~~~~~~~~d~   90 (193)
                      .++.++|+++|++|||||||++++.+..+.. ..+|.+  .....+.+.+   ..+.+|||||++.+...+..+++.+|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            4677999999999999999999999888754 345555  3445566654   799999999999998888999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCCC-CCCCc-EEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCc
Q 029437           91 VVYLVDAYDKERFAESKKELDALLSDEA-LANVP-FLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVR  166 (193)
Q Consensus        91 vl~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p-viiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (193)
                      +++|+|++++.+++.+..|+..+..... ..+.| +++++||+|+..  ....++...... .                .
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-~----------------~  145 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ-E----------------N  145 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHH-H----------------H
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHH-H----------------c
Confidence            9999999999999888877776643210 12445 899999999973  233333222111 0                1


Q ss_pred             ceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          167 PLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       167 ~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .+++++|||++|.|++++|++|.+.+
T Consensus       146 ~~~~~~~Sa~~~~gi~~l~~~l~~~~  171 (178)
T 2hxs_A          146 GFSSHFVSAKTGDSVFLCFQKVAAEI  171 (178)
T ss_dssp             TCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence            24689999999999999999998764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.96  E-value=4.4e-29  Score=172.56  Aligned_cols=158  Identities=20%  Similarity=0.223  Sum_probs=123.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      .++.++|+++|++|+|||||++++.+..+.. ..++.+...  ..+...  ...+.+|||||++.+......+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            4567999999999999999999999988654 345555432  333444  37899999999999998888899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++|+|++++.++..+..|+..+.. ...++.|+++++||+|+...  ...++...... .                ...+
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~-~----------------~~~~  144 (170)
T 1z0j_A           83 IIVYDITKEETFSTLKNWVRELRQ-HGPPSIVVAIAGNKCDLTDVREVMERDAKDYAD-S----------------IHAI  144 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHH-HSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHH-H----------------TTCE
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHH-hCCCCCcEEEEEECCccccccccCHHHHHHHHH-H----------------cCCE
Confidence            999999999999888887777654 33468999999999999732  22333222111 0                1257


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++++||++|.|+++++++|.+.+
T Consensus       145 ~~~~Sa~~~~~i~~l~~~i~~~i  167 (170)
T 1z0j_A          145 FVETSAKNAININELFIEISRRI  167 (170)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHC
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHH
Confidence            89999999999999999998875

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.96  E-value=4e-29  Score=175.31  Aligned_cols=160  Identities=19%  Similarity=0.280  Sum_probs=124.3

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce-eEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      ..+..++|+++|++|+|||||++++.+..+... .++..... ..+...+  ..+.+|||||+..+...+..++..+|++
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (187)
T 2a9k_A           14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   93 (187)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence            346779999999999999999999998886543 33443322 3344444  5899999999999999989999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++|+|++++.++..+..|+..+.......++|+++|+||+|+..  ....++..+....                 ..++
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~  156 (187)
T 2a9k_A           94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ-----------------WNVN  156 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH-----------------cCCe
Confidence            99999999999999988888886654446899999999999963  3334443333211                 1247


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++++||++|.|++++|++|.+.+
T Consensus       157 ~~~~Sa~~~~gi~~l~~~l~~~i  179 (187)
T 2a9k_A          157 YVETSAKTRANVDKVFFDLMREI  179 (187)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHH
Confidence            89999999999999999998764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.96  E-value=1.7e-29  Score=176.72  Aligned_cols=158  Identities=19%  Similarity=0.217  Sum_probs=121.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      ...++|+++|++|+|||||++++.+..+.. ..+|.+.. ...+..++  ..+.+|||||++.+......+++.+|++++
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~   83 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   83 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence            356899999999999999999999877654 33555443 23334444  678999999999998888888999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      |+|++++++++.+..|+..+.......+.|+++|+||+|+..  ....++.......                 ..++++
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~  146 (181)
T 3t5g_A           84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAES-----------------WNAAFL  146 (181)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------TTCEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHH-----------------hCCcEE
Confidence            999999999999999988887766667899999999999963  2333333222211                 124689


Q ss_pred             EeeeecCCChhhHHHhhhhhc
Q 029437          172 MCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       172 ~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++||++|.|++++|++|.+.+
T Consensus       147 ~~Sa~~~~~v~~l~~~l~~~~  167 (181)
T 3t5g_A          147 ESSAKENQTAVDVFRRIILEA  167 (181)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCHHHHHHHHHHHH
Confidence            999999999999999998764

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.96  E-value=9.3e-30  Score=181.10  Aligned_cols=158  Identities=19%  Similarity=0.182  Sum_probs=119.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce---eEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTS---EELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~---~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      ...++|+|+|++|||||||++++.+..+... .+|.+...   ..+......+.+|||||++.+......++..+|++++
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  101 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVL  101 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEE
Confidence            4679999999999999999999999887653 34444322   2222345789999999999998888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      |+|++++.+++.+..|+..+.......++|+++|+||+|+..  .....+...... .                ..+.++
T Consensus       102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~----------------~~~~~~  164 (201)
T 3oes_A          102 VYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAE-S----------------WGATFM  164 (201)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHH-H----------------HTCEEE
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHH-H----------------hCCeEE
Confidence            999999999999999999987765667899999999999873  223222211111 1                124789


Q ss_pred             EeeeecCCChhhHHHhhhhhc
Q 029437          172 MCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       172 ~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++||++|.|++++|++|.+.+
T Consensus       165 ~~Sa~~~~~v~~l~~~l~~~i  185 (201)
T 3oes_A          165 ESSARENQLTQGIFTKVIQEI  185 (201)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHH
Confidence            999999999999999998764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=5.8e-29  Score=175.77  Aligned_cols=158  Identities=22%  Similarity=0.262  Sum_probs=124.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      ...++|+++|++|+|||||++++.+..+.. ..++.+..  ...+...  ...+.+|||||++.+......+++.+|+++
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   92 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   92 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            456899999999999999999999888664 34555433  3334443  478999999999999988899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      +|+|++++.++..+..|+..+.......+.|+++|+||+|+... ...++.......                 ..+.++
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~  155 (195)
T 1x3s_A           93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARK-----------------HSMLFI  155 (195)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHH-----------------TTCEEE
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHH-----------------cCCEEE
Confidence            99999999999999888888866544568999999999999632 333332222111                 124689


Q ss_pred             EeeeecCCChhhHHHhhhhhc
Q 029437          172 MCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       172 ~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++||++|.|++++|++|.+.+
T Consensus       156 ~~Sa~~~~gi~~l~~~l~~~~  176 (195)
T 1x3s_A          156 EASAKTCDGVQCAFEELVEKI  176 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHH
T ss_pred             EecCCCCCCHHHHHHHHHHHH
Confidence            999999999999999998754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.96  E-value=4e-29  Score=174.46  Aligned_cols=159  Identities=18%  Similarity=0.268  Sum_probs=124.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce-eEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      ....++|+++|++|+|||||++++.+..+... .+|.+... ..+..++  ..+.+|||||+..+......++..+|+++
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   85 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   85 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence            45678999999999999999999998876653 34544332 3344454  67899999999999888888999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      +|+|++++.++..+..|+..++......+.|+++|+||+|+..  ....++...... .                ..+.+
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~----------------~~~~~  148 (181)
T 2fn4_A           86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGA-S----------------HHVAY  148 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-H----------------TTCEE
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-H----------------cCCeE
Confidence            9999999999999999888886655556899999999999974  233333222111 0                12578


Q ss_pred             EEeeeecCCChhhHHHhhhhhc
Q 029437          171 FMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       171 ~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++||++|.|++++|++|.+.+
T Consensus       149 ~~~Sa~~~~gv~~l~~~l~~~~  170 (181)
T 2fn4_A          149 FEASAKLRLNVDEAFEQLVRAV  170 (181)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEecCCCCCCHHHHHHHHHHHH
Confidence            9999999999999999998764

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=2.8e-29  Score=175.21  Aligned_cols=159  Identities=21%  Similarity=0.300  Sum_probs=115.9

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCCCCCccee--EEEeCC--EEEEEEEcCChhhhHhhHHhhcccCC
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLV--QHQPTQYPTSE--ELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVD   89 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~t~~~~~~--~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d   89 (193)
                      ..+..++|+++|++|+|||||++++.+..+.  ...+|.+....  .+...+  ..+.+|||||++.+...+..++..+|
T Consensus         6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   85 (180)
T 2g6b_A            6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   85 (180)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence            3567899999999999999999999998875  34456555433  234443  58999999999999998889999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437           90 AVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRP  167 (193)
Q Consensus        90 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (193)
                      ++++|+|++++.+++.+..|+..+..... .+.|+++++||+|+...  ...++...... .                ..
T Consensus        86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~----------------~~  147 (180)
T 2g6b_A           86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAK-E----------------YG  147 (180)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHH-H----------------HT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHHH-H----------------cC
Confidence            99999999999999888888877754322 58999999999999743  23333222111 0                12


Q ss_pred             eEEEEeeeecCCChhhHHHhhhhhc
Q 029437          168 LEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       168 ~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +.++++||++|.|++++|++|.+.+
T Consensus       148 ~~~~~~Sa~~~~gi~~l~~~l~~~~  172 (180)
T 2g6b_A          148 LPFMETSAKTGLNVDLAFTAIAKEL  172 (180)
T ss_dssp             CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            3579999999999999999998764

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.96  E-value=8.2e-29  Score=172.73  Aligned_cols=155  Identities=14%  Similarity=0.178  Sum_probs=117.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcc-eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      .++.+||+++|++|||||||++++.+..+....||.+.. ...+..++  ..+.+|||||++.     ..+++.+|++++
T Consensus         4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il   78 (178)
T 2iwr_A            4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF   78 (178)
T ss_dssp             CCCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence            356799999999999999999999999888766776643 23344443  6789999999876     345678999999


Q ss_pred             EEECCChhhHHHHHHHHHHHH--cCCCCCCCcEEEEEeCCCCC----CCCCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437           94 LVDAYDKERFAESKKELDALL--SDEALANVPFLVLGNKIDIP----YAASEEELRYHLGLSNFTTGKGKVNLADSNVRP  167 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~pviiv~nK~D~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (193)
                      |+|+++++++..+..|+..+.  .....+++|+++++||+|+.    +....++..+... ..               ..
T Consensus        79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~-~~---------------~~  142 (178)
T 2iwr_A           79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXA-DM---------------KR  142 (178)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH-HH---------------SS
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHH-hh---------------cC
Confidence            999999999999888654432  22333689999999999984    2334444332211 01               23


Q ss_pred             eEEEEeeeecCCChhhHHHhhhhhc
Q 029437          168 LEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       168 ~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .++++|||++|.|++++|++|.+.+
T Consensus       143 ~~~~~~Sa~~~~~i~~lf~~l~~~~  167 (178)
T 2iwr_A          143 CSYYETXATYGLNVDRVFQEVAQKV  167 (178)
T ss_dssp             EEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             CeEEEEeccccCCHHHHHHHHHHHH
Confidence            6789999999999999999998754

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.96  E-value=1.9e-29  Score=178.41  Aligned_cols=162  Identities=18%  Similarity=0.223  Sum_probs=118.6

Q ss_pred             hCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee-EEEeCC--EEEEEEEcCChhhhHhhHHhhcccCC
Q 029437           14 LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE-ELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVD   89 (193)
Q Consensus        14 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d   89 (193)
                      +...+..++|+++|++|+|||||++++.+..+.. ..+|.+.... .+...+  ..+.+|||||++.+......+++.+|
T Consensus        17 ~~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   96 (194)
T 3reg_A           17 IENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSD   96 (194)
T ss_dssp             ----CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             ccccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence            3345678999999999999999999999988754 3455544332 233333  56799999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC----CCHHHHHHhhCCCccccCCCccccCCCCC
Q 029437           90 AVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA----ASEEELRYHLGLSNFTTGKGKVNLADSNV  165 (193)
Q Consensus        90 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (193)
                      ++++|+|++++.++..+...|...+.. ...+.|+++|+||+|+...    ...++....... .               
T Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~---------------  159 (194)
T 3reg_A           97 VVLLCFAVNNRTSFDNISTKWEPEIKH-YIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQK-L---------------  159 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHH-HCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHH-H---------------
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHH-hCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHh-c---------------
Confidence            999999999999998875444444332 2358999999999999732    333332221111 0               


Q ss_pred             cceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          166 RPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       166 ~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ....+++|||++|.|++++|++|.+.+
T Consensus       160 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i  186 (194)
T 3reg_A          160 GCVAYIEASSVAKIGLNEVFEKSVDCI  186 (194)
T ss_dssp             TCSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence            111279999999999999999998764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=6.6e-29  Score=176.81  Aligned_cols=158  Identities=20%  Similarity=0.221  Sum_probs=123.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      ....++|+++|++|+|||||++++.+..+.. ..+|.+..  ...+.+++  ..+.+|||||++.+......+++.+|++
T Consensus        23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  102 (201)
T 2ew1_A           23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL  102 (201)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence            4567999999999999999999999888764 44555533  33445554  6899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+..  ....++......  .               ..+.
T Consensus       103 i~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~--~---------------~~~~  164 (201)
T 2ew1_A          103 ILTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFSE--A---------------QDMY  164 (201)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHH--H---------------HTCC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHH--H---------------cCCE
Confidence            9999999999998888888776442 235799999999999973  333333222111  0               1246


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++|||++|.|++++|++|.+.+
T Consensus       165 ~~~~Sa~~g~gv~~l~~~l~~~i  187 (201)
T 2ew1_A          165 YLETSAKESDNVEKLFLDLACRL  187 (201)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999999999998754

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.96  E-value=1e-28  Score=175.94  Aligned_cols=159  Identities=19%  Similarity=0.291  Sum_probs=125.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc-eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~-~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      .+..++|+|+|++|||||||++++.+..+... .+|.+.. ...+...+  ..+.+|||||+..+......++..+|+++
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   90 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   90 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence            45679999999999999999999998886543 3444432 23444444  58999999999999999899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      +|+|++++.++..+..|+..+.......+.|+++|+||+|+..  ....++.......                 ...++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~  153 (206)
T 2bov_A           91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ-----------------WNVNY  153 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHH-----------------hCCeE
Confidence            9999999999999988888887655556899999999999974  3333443332211                 12468


Q ss_pred             EEeeeecCCChhhHHHhhhhhc
Q 029437          171 FMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       171 ~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++||++|.|++++|++|.+.+
T Consensus       154 ~~~Sa~~g~gi~~l~~~l~~~i  175 (206)
T 2bov_A          154 VETSAKTRANVDKVFFDLMREI  175 (206)
T ss_dssp             EEECTTTCTTHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHH
Confidence            9999999999999999998764

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.96  E-value=3.4e-29  Score=174.83  Aligned_cols=157  Identities=21%  Similarity=0.323  Sum_probs=121.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCC--cceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQY--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      ....++|+++|++|+|||||++++.+..+.. ..++.+  .....+...+  ..+.+|||||++.+......+++.+|++
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   85 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV   85 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence            4567999999999999999999999888664 334444  3344555665  7899999999999988888899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++|+|++++.++..+..|+..+...  .++.|+++|+||+|+...  ....+.......                 ..++
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~  146 (181)
T 3tw8_B           86 IVVYDVTSAESFVNVKRWLHEINQN--CDDVCRILVGNKNDDPERKVVETEDAYKFAGQ-----------------MGIQ  146 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH--CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCCCchhcccCHHHHHHHHHH-----------------cCCe
Confidence            9999999999999998888877543  358999999999998732  232322221110                 1246


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++++||++|.|++++|++|.+.+
T Consensus       147 ~~~~Sa~~~~gi~~l~~~l~~~~  169 (181)
T 3tw8_B          147 LFETSAKENVNVEEMFNCITELV  169 (181)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            79999999999999999998764

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.96  E-value=3e-29  Score=173.10  Aligned_cols=156  Identities=17%  Similarity=0.299  Sum_probs=121.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      ...++|+++|++|+|||||++++.+..+.. ..+|.+..  ...+...  ...+.+|||||+..+......+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            457899999999999999999999887764 34555443  3344444  368999999999998888888899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      +|+|++++.+++.+..|+..+....  .+.|+++++||+|+..  ....++.......                 ..+++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~  143 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKR-----------------LKLRF  143 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHH-----------------HTCEE
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHH-----------------cCCeE
Confidence            9999999999988888887775432  5899999999999973  2333333222210                 12478


Q ss_pred             EEeeeecCCChhhHHHhhhhhc
Q 029437          171 FMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       171 ~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++||++|.|+++++++|.+.+
T Consensus       144 ~~~Sa~~~~~i~~l~~~l~~~~  165 (168)
T 1z2a_A          144 YRTSVKEDLNVSEVFKYLAEKH  165 (168)
T ss_dssp             EECBTTTTBSSHHHHHHHHHHH
T ss_pred             EEEecCCCCCHHHHHHHHHHHH
Confidence            9999999999999999998764

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.96  E-value=4.1e-29  Score=172.82  Aligned_cols=158  Identities=20%  Similarity=0.269  Sum_probs=115.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      ....++|+++|++|+|||||++++.+..+.. ..++.+...  ..+..+  ...+.+|||||++.+......+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            4567899999999999999999999887754 445655443  334433  36899999999999988888889999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++|+|++++.+++.+..|+..+... ...+.|+++++||+|+..  ....++.......                 ...+
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~  144 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESYAES-----------------VGAK  144 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccccCHHHHHHHHHH-----------------cCCe
Confidence            9999999999999888887776432 224799999999999974  3333333322111                 1257


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++++||++|.|++++|++|.+.+
T Consensus       145 ~~~~Sa~~~~gi~~l~~~l~~~~  167 (170)
T 1z08_A          145 HYHTSAKQNKGIEELFLDLCKRM  167 (170)
T ss_dssp             EEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEecCCCCCCHHHHHHHHHHHH
Confidence            89999999999999999998764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.96  E-value=1.1e-28  Score=174.85  Aligned_cols=159  Identities=19%  Similarity=0.223  Sum_probs=117.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCC--CcceeEEEeCC--EEEEEEEcCChhhhHh-hHHhhcccCCE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQ--YPTSEELSIGK--IKFKAFDLGGHQIARR-VWKDYYAKVDA   90 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~--~~~~~~~~~~~--~~~~~~D~~G~~~~~~-~~~~~~~~~d~   90 (193)
                      ....++|+++|++|||||||++++.+..+. ...++.  ......+.+++  +.+.+|||+|+..+.. +...+++.+|+
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~   99 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA   99 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence            456799999999999999999999754332 222332  22334444444  6789999999987654 66778889999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437           91 VVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPL  168 (193)
Q Consensus        91 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (193)
                      +++|+|++++.++..+..|+..+.......++|+++|+||+|+...  ...++.......                 ..+
T Consensus       100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~-----------------~~~  162 (195)
T 3cbq_A          100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT-----------------LSC  162 (195)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------TTC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHH-----------------hCC
Confidence            9999999999999999999888765433458999999999999742  333333221110                 124


Q ss_pred             EEEEeeeecCCChhhHHHhhhhhc
Q 029437          169 EVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       169 ~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .+++|||++|.|++++|++|.+.+
T Consensus       163 ~~~e~Sa~~~~~v~~lf~~l~~~i  186 (195)
T 3cbq_A          163 KHIETSAALHHNTRELFEGAVRQI  186 (195)
T ss_dssp             EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCCHHHHHHHHHHHH
Confidence            789999999999999999998764

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.96  E-value=3.9e-29  Score=179.78  Aligned_cols=159  Identities=19%  Similarity=0.270  Sum_probs=121.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC------------CEEEEEEEcCChhhhHhhH
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG------------KIKFKAFDLGGHQIARRVW   81 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~------------~~~~~~~D~~G~~~~~~~~   81 (193)
                      ....++|+|+|++|+|||||++++.+..+.. ..+|.+..  ...+.+.            ...+.+|||||++.+...+
T Consensus        22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~  101 (217)
T 2f7s_A           22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT  101 (217)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence            4567999999999999999999999887653 23444322  2233332            5789999999999999999


Q ss_pred             HhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccc
Q 029437           82 KDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVN  159 (193)
Q Consensus        82 ~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~  159 (193)
                      ..+++.+|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+..  ....++..+....           
T Consensus       102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~-----------  170 (217)
T 2f7s_A          102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK-----------  170 (217)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHH-----------
Confidence            999999999999999999999988888877765443336899999999999974  2333332222111           


Q ss_pred             cCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          160 LADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       160 ~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                            ..+.+++|||++|.|++++|++|.+.+
T Consensus       171 ------~~~~~~~~Sa~~g~gi~~l~~~l~~~i  197 (217)
T 2f7s_A          171 ------YGIPYFETSAATGQNVEKAVETLLDLI  197 (217)
T ss_dssp             ------TTCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             ------CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence                  114689999999999999999998764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.96  E-value=7.2e-29  Score=172.86  Aligned_cols=158  Identities=19%  Similarity=0.254  Sum_probs=122.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      .+..++|+++|++|+|||||++++.+..+.. ..++.+.  ....+...+  ..+.+|||||++.+...+..++..+|++
T Consensus        11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   90 (179)
T 2y8e_A           11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA   90 (179)
T ss_dssp             -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            4567999999999999999999999887664 3445443  334444544  6899999999999998888889999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++|+|++++.++..+..|+..+... ...+.|+++|+||+|+..  ....++.......                 ..+.
T Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~  152 (179)
T 2y8e_A           91 VVVYDITNTNSFHQTSKWIDDVRTE-RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-----------------LNVM  152 (179)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-HTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTCE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECCcccccCcCCHHHHHHHHHH-----------------cCCe
Confidence            9999999999998888888777543 225899999999999973  2333332222110                 1257


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++++||++|.|+++++++|.+.+
T Consensus       153 ~~~~Sa~~~~~i~~l~~~l~~~~  175 (179)
T 2y8e_A          153 FIETSAKAGYNVKQLFRRVAAAL  175 (179)
T ss_dssp             EEEEBTTTTBSHHHHHHHHHHTC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999999999998875

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.96  E-value=5.4e-29  Score=177.08  Aligned_cols=158  Identities=20%  Similarity=0.240  Sum_probs=117.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      .+..++|+|+|++|||||||++++.+..+.. ..++.+.  ....+..++  ..+.+|||||++.+...+..+++.+|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  101 (200)
T 2o52_A           22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA  101 (200)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence            4677999999999999999999999887754 3344443  334455555  7899999999999988888889999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+..  .....+.......                 ..+.
T Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~  163 (200)
T 2o52_A          102 LLVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQE-----------------NELM  163 (200)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHHHH-----------------cCCE
Confidence            99999999999999888887775432 26899999999999963  2333333222111                 1257


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++|||++|.|++++|++|.+.+
T Consensus       164 ~~~~SA~~g~gi~~l~~~l~~~i  186 (200)
T 2o52_A          164 FLETSALTGENVEEAFLKCARTI  186 (200)
T ss_dssp             EEEECTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999999999998764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.96  E-value=1.3e-28  Score=174.23  Aligned_cols=158  Identities=21%  Similarity=0.275  Sum_probs=122.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      ....++|+++|++|+|||||++++.+..+.. ..++.+.  ....+...+  ..+.+|||||++.+......+++.+|++
T Consensus        13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   92 (196)
T 3tkl_A           13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   92 (196)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence            3466899999999999999999999888664 3344443  344555555  6899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++|+|++++.++..+..|+..+... ...+.|+++|+||+|+....  ...+.......                 ..++
T Consensus        93 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~  154 (196)
T 3tkl_A           93 IVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADS-----------------LGIP  154 (196)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------TTCC
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccCHHHHHHHHHH-----------------cCCc
Confidence            9999999999999988887777543 33589999999999997432  22222111110                 1146


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++|||++|.|++++|++|.+.+
T Consensus       155 ~~~~Sa~~g~gv~~l~~~l~~~i  177 (196)
T 3tkl_A          155 FLETSAKNATNVEQSFMTMAAEI  177 (196)
T ss_dssp             EEEECTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHH
Confidence            79999999999999999998764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=1.9e-29  Score=178.07  Aligned_cols=158  Identities=18%  Similarity=0.283  Sum_probs=122.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEE--eCCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELS--IGKIKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      ....+||+|+|++|+|||||++++.+..+.. ..++.+...  ..+.  .....+.+|||||++.+......+++.+|++
T Consensus        20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   99 (191)
T 3dz8_A           20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF   99 (191)
T ss_dssp             EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred             cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence            4577999999999999999999999877654 234444332  2332  3568999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++|+|++++.+++.+..|+..+.. ....+.|+++|+||+|+..  ....++...... .                ..+.
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~  161 (191)
T 3dz8_A          100 ILMYDITNEESFNAVQDWATQIKT-YSWDNAQVILVGNKCDMEEERVVPTEKGQLLAE-Q----------------LGFD  161 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-H----------------HTCE
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHH-hcCCCCCEEEEEECCCCccccccCHHHHHHHHH-H----------------cCCe
Confidence            999999999999988888777754 2346899999999999863  233332221111 0                1246


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++|||++|.|++++|++|.+.+
T Consensus       162 ~~~~Sa~~~~gi~~l~~~l~~~i  184 (191)
T 3dz8_A          162 FFEASAKENISVRQAFERLVDAI  184 (191)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            89999999999999999998764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.96  E-value=2.3e-28  Score=173.75  Aligned_cols=155  Identities=18%  Similarity=0.242  Sum_probs=121.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCC-------------------------------
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGK-------------------------------   63 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~-------------------------------   63 (193)
                      ++.++|+|+|++|+|||||++++.+..+.. ..+|.+...  ..+...+                               
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            467999999999999999999999988664 334554332  2233332                               


Q ss_pred             --------EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC-
Q 029437           64 --------IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP-  134 (193)
Q Consensus        64 --------~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~-  134 (193)
                              ..+.+|||||++.+......+++.+|++++|+|++++.++..+..|+..+...   .+.|+++|+||+|.. 
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~~  161 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKNK  161 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC-
T ss_pred             cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCccc
Confidence                    78999999999999998899999999999999999999998888888877543   249999999999943 


Q ss_pred             CCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          135 YAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .....++..+....                 ..++++++||++|.|++++|++|.+.+
T Consensus       162 ~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~i~~l~~~l~~~~  202 (208)
T 3clv_A          162 FQVDILEVQKYAQD-----------------NNLLFIQTSAKTGTNIKNIFYMLAEEI  202 (208)
T ss_dssp             CCSCHHHHHHHHHH-----------------TTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHH-----------------cCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence            23444444433321                 124789999999999999999998764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.96  E-value=9.8e-29  Score=172.17  Aligned_cols=158  Identities=20%  Similarity=0.257  Sum_probs=123.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      ....++|+++|++|+|||||++++.+..+.. ..++.+..  ...+...  ...+.+|||||++.+......+++.+|++
T Consensus        12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (179)
T 1z0f_A           12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (179)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence            4567999999999999999999999888765 33454433  3334444  36899999999999999889999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++|+|++++.++..+..|+..+... ...+.|+++++||+|+..  ....++..+....                 ..+.
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~  153 (179)
T 1z0f_A           92 LMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE-----------------NGLL  153 (179)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred             EEEEeCcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHH-----------------cCCE
Confidence            9999999999998888887776543 235899999999999963  3333333332211                 1247


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++++||++|.|++++|++|.+.+
T Consensus       154 ~~~~Sa~~~~gi~~l~~~l~~~i  176 (179)
T 1z0f_A          154 FLEASAKTGENVEDAFLEAAKKI  176 (179)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999999999998765

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.96  E-value=2.5e-28  Score=173.83  Aligned_cols=158  Identities=22%  Similarity=0.293  Sum_probs=122.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      ....++|+|+|++|+|||||++++.+..+.. ..++.+...  ..+...  ...+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   84 (203)
T 1zbd_A            5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF   84 (203)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence            3456899999999999999999999988754 345555332  333333  46899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++|+|++++.++..+..|+..+... ...+.|+++|+||+|+...  ...++...... .                ..++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~  146 (203)
T 1zbd_A           85 ILMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLAD-H----------------LGFE  146 (203)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHH-H----------------HTCE
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCcccccCHHHHHHHHH-H----------------CCCe
Confidence            9999999999999888887776542 2358999999999999742  22332222111 0                1246


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++|||++|.|++++|++|.+.+
T Consensus       147 ~~~~Sa~~~~gi~~l~~~l~~~i  169 (203)
T 1zbd_A          147 FFEASAKDNINVKQTFERLVDVI  169 (203)
T ss_dssp             EEECBTTTTBSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            89999999999999999998754

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.96  E-value=2e-29  Score=176.58  Aligned_cols=158  Identities=20%  Similarity=0.272  Sum_probs=95.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      .+..++|+++|++|+|||||++++.+..+.. ..+|.+.  ....+.+++  ..+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (183)
T 2fu5_C            5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   84 (183)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence            4567999999999999999999999877653 3344443  334455555  7899999999999988888889999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++|+|++++.++..+..|+..+... ...+.|+++|+||+|+...  ...++...... .                ..++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~----------------~~~~  146 (183)
T 2fu5_C           85 MLVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLAL-D----------------YGIK  146 (183)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHH-H----------------HTCE
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHHH-H----------------cCCe
Confidence            9999999999999998888777543 2358999999999999742  33333322211 0                1247


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++|||++|.|++++|++|.+.+
T Consensus       147 ~~~~Sa~~~~~i~~l~~~l~~~i  169 (183)
T 2fu5_C          147 FMETSAKANINVENAFFTLARDI  169 (183)
T ss_dssp             EEECCC---CCHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999999999998764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.96  E-value=1.5e-28  Score=171.68  Aligned_cols=160  Identities=22%  Similarity=0.343  Sum_probs=111.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeC---CEEEEEEEcCChhhhHhhHHhhcccCCE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIG---KIKFKAFDLGGHQIARRVWKDYYAKVDA   90 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~---~~~~~~~D~~G~~~~~~~~~~~~~~~d~   90 (193)
                      ....++|+++|++|||||||++++.+..+.. ..++.+.  ....+..+   ...+.+||+||++.+......+++.+|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            4567999999999999999999999888654 3344443  33444443   4789999999999999988889999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCC---CCCCCcEEEEEeCCCCCCC---CCHHHHHHhhCCCccccCCCccccCCCC
Q 029437           91 VVYLVDAYDKERFAESKKELDALLSDE---ALANVPFLVLGNKIDIPYA---ASEEELRYHLGLSNFTTGKGKVNLADSN  164 (193)
Q Consensus        91 vl~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~pviiv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (193)
                      +++|+|++++.++..+..|+..+....   ...+.|+++++||+|+...   ...++...... ..              
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~-~~--------------  149 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK-SL--------------  149 (182)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH-HT--------------
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH-hc--------------
Confidence            999999999999988888887765422   2368999999999999622   23333322221 01              


Q ss_pred             CcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          165 VRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                       ....+++|||++|.|++++|++|.+.+
T Consensus       150 -~~~~~~~~Sa~~~~gi~~l~~~l~~~~  176 (182)
T 1ky3_A          150 -GDIPLFLTSAKNAINVDTAFEEIARSA  176 (182)
T ss_dssp             -TSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             -CCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence             235689999999999999999998754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.96  E-value=1.9e-28  Score=173.13  Aligned_cols=158  Identities=20%  Similarity=0.265  Sum_probs=123.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      ....++|+|+|++|+|||||++++.+..+.. ..++.+...  ..+..  ....+.+|||||++.+...+..++..+|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v  101 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA  101 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            4567999999999999999999999988764 334544332  23333  347899999999999988889999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++|+|++++.++..+..|+..+... ...+.|+++|+||+|+..  ....++.......                 ..+.
T Consensus       102 i~v~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~  163 (193)
T 2oil_A          102 LLVFDLTKHQTYAVVERWLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARMFAEN-----------------NGLL  163 (193)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHTT-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECCCcccccccCHHHHHHHHHH-----------------cCCE
Confidence            9999999999998888888877543 346899999999999974  2333333222211                 1257


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++|||++|.|++++|++|.+.+
T Consensus       164 ~~~~Sa~~~~gi~~l~~~l~~~i  186 (193)
T 2oil_A          164 FLETSALDSTNVELAFETVLKEI  186 (193)
T ss_dssp             EEEECTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999999999998764

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.96  E-value=1.3e-28  Score=173.82  Aligned_cols=158  Identities=21%  Similarity=0.258  Sum_probs=121.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      ....++|+|+|++|+|||||++++.+..+.. ..++.+.  ....+..++  ..+.+|||||++.+......+++.+|++
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   97 (191)
T 2a5j_A           18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA   97 (191)
T ss_dssp             TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence            4577999999999999999999999888764 3344443  334455544  6899999999999988888889999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+..  ....++.......                 ..+.
T Consensus        98 i~v~d~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~  159 (191)
T 2a5j_A           98 LLVYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFARE-----------------HGLI  159 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCCccccCHHHHHHHHHH-----------------cCCE
Confidence            9999999999999988888777543 235899999999999963  3333333222110                 1247


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++|||++|.|++++|++|.+.+
T Consensus       160 ~~~~Sa~~~~gi~~l~~~l~~~i  182 (191)
T 2a5j_A          160 FMETSAKTACNVEEAFINTAKEI  182 (191)
T ss_dssp             EEEECTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999999999998764

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.96  E-value=4.4e-29  Score=178.09  Aligned_cols=158  Identities=16%  Similarity=0.229  Sum_probs=93.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC--Cccc-cCCCCC--cceeEEEeC----CEEEEEEEcCChhhhHhhHHhhcccC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDE--RLVQ-HQPTQY--PTSEELSIG----KIKFKAFDLGGHQIARRVWKDYYAKV   88 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~--~~~~-~~~t~~--~~~~~~~~~----~~~~~~~D~~G~~~~~~~~~~~~~~~   88 (193)
                      +..++|+|+|++|+|||||++++.+.  .+.. ..+|.+  .....+.++    ...+.+|||||+..+...+..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            45689999999999999999999988  6553 445554  445556655    57899999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHcCCC--CCCCcEEEEEeCCCCCC---CCCHHHHHHhhCCCccccCCCccccCCC
Q 029437           89 DAVVYLVDAYDKERFAESKKELDALLSDEA--LANVPFLVLGNKIDIPY---AASEEELRYHLGLSNFTTGKGKVNLADS  163 (193)
Q Consensus        89 d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~pviiv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (193)
                      |++++|+|++++.++..+..|+..+.....  ..+.|+++|+||+|+..   ....++..+....               
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~---------------  162 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATT---------------  162 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHH---------------
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHH---------------
Confidence            999999999999999999988888765433  25899999999999975   2333333222211               


Q ss_pred             CCcceEEEEeeeec-CCChhhHHHhhhhhc
Q 029437          164 NVRPLEVFMCSIVR-KMGYGDGFKWLSQYI  192 (193)
Q Consensus       164 ~~~~~~~~~~Sa~~-g~gv~el~~~i~~~~  192 (193)
                        ..+.+++|||++ |.|++++|++|.+.+
T Consensus       163 --~~~~~~~~Sa~~~~~gi~~l~~~i~~~~  190 (208)
T 2yc2_C          163 --NTLDFFDVSANPPGKDADAPFLSIATTF  190 (208)
T ss_dssp             --TTCEEEECCC-------CHHHHHHHHHH
T ss_pred             --cCCEEEEeccCCCCcCHHHHHHHHHHHH
Confidence              125789999999 999999999998754

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.96  E-value=9.6e-29  Score=174.66  Aligned_cols=159  Identities=17%  Similarity=0.265  Sum_probs=118.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      ....++|+++|++|+|||||++++.+..+.. ..++.+.  ....+.+++  ..+.+|||||++.+...+..+++.+|++
T Consensus        23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i  102 (192)
T 2il1_A           23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI  102 (192)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            4567899999999999999999999888754 3445543  334455544  6899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++|+|++++.+++.+..|+..+.. ....+.|+++|+||+|+..  ....++...... ..               ....
T Consensus       103 ilV~D~~~~~s~~~~~~~~~~i~~-~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~-~~---------------~~~~  165 (192)
T 2il1_A          103 ILVYDITKKETFDDLPKWMKMIDK-YASEDAELLLVGNKLDCETDREITRQQGEKFAQ-QI---------------TGMR  165 (192)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-TS---------------TTCE
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEECcccccccccCHHHHHHHHH-hc---------------CCCe
Confidence            999999999999888777666533 2335899999999999973  233333322211 11               2357


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++|||++|.|++++|++|.+.+
T Consensus       166 ~~~~SA~~g~gi~~l~~~l~~~i  188 (192)
T 2il1_A          166 FCEASAKDNFNVDEIFLKLVDDI  188 (192)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999999999998764

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.96  E-value=1.4e-28  Score=169.13  Aligned_cols=157  Identities=18%  Similarity=0.275  Sum_probs=119.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc-eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPT-SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL   94 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~-~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v   94 (193)
                      +.++|+++|++|+|||||++++.+..+... .++.... ...+...  ...+.+||+||+..+......++..+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            468999999999999999999998876543 3344332 2333343  35689999999998888888889999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      +|++++.++..+..|+..+.......+.|+++++||+|+... ...++..+... .                ..++++++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-~----------------~~~~~~~~  144 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR-S----------------YGIPYIET  144 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-H----------------HTCCEEEE
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH-H----------------cCCeEEEe
Confidence            999999999888888877755444458999999999999752 23332222111 1                11358999


Q ss_pred             eeecCCChhhHHHhhhhhc
Q 029437          174 SIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~~  192 (193)
                      ||++|.|+++++++|.+.+
T Consensus       145 Sa~~~~gi~~l~~~l~~~~  163 (166)
T 2ce2_X          145 SAKTRQGVEDAFYTLVREI  163 (166)
T ss_dssp             CTTTCTTHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHH
Confidence            9999999999999998765

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=1.3e-28  Score=174.52  Aligned_cols=158  Identities=20%  Similarity=0.220  Sum_probs=120.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      .+..++|+++|++|+|||||++++.+..+.. ..+|.+... ..+...  ...+.+|||||+.. ......++..+|+++
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii  103 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV  103 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence            4567999999999999999999999988764 334554333 223344  36799999999987 667778889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      +|+|++++++++.+..|+..+.......+.|+++|+||+|+..  ....++.......                 ..+.+
T Consensus       104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~  166 (196)
T 2atv_A          104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATE-----------------LACAF  166 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTSEE
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHH-----------------hCCeE
Confidence            9999999999999888888776544446899999999999974  2333332221110                 12478


Q ss_pred             EEeeeecCC-ChhhHHHhhhhhc
Q 029437          171 FMCSIVRKM-GYGDGFKWLSQYI  192 (193)
Q Consensus       171 ~~~Sa~~g~-gv~el~~~i~~~~  192 (193)
                      ++|||++|. |++++|++|.+.+
T Consensus       167 ~~~Sa~~g~~gi~~l~~~l~~~i  189 (196)
T 2atv_A          167 YECSACTGEGNITEIFYELCREV  189 (196)
T ss_dssp             EECCTTTCTTCHHHHHHHHHHHH
T ss_pred             EEECCCcCCcCHHHHHHHHHHHH
Confidence            999999999 9999999998764

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.96  E-value=5.3e-29  Score=178.94  Aligned_cols=157  Identities=20%  Similarity=0.178  Sum_probs=118.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCccee---EEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTSE---ELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~~---~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      .+..+||+++|++|||||||++++.+..+... .+|.+....   .+....+.+.+|||+|++.+..++..++..+|+++
T Consensus        24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  103 (214)
T 3q3j_B           24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL  103 (214)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence            45789999999999999999999999887653 456554432   22334578999999999999999999999999999


Q ss_pred             EEEECCChhhHHH-HHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--------------CCHHHHHHhhCCCccccCCCc
Q 029437           93 YLVDAYDKERFAE-SKKELDALLSDEALANVPFLVLGNKIDIPYA--------------ASEEELRYHLGLSNFTTGKGK  157 (193)
Q Consensus        93 ~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~~  157 (193)
                      +|+|+++++++.. +..|+..+...  .++.|+++|+||+|+...              ...++...... .        
T Consensus       104 ~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~--------  172 (214)
T 3q3j_B          104 LCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAK-Q--------  172 (214)
T ss_dssp             EEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH-H--------
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHH-H--------
Confidence            9999999999988 46666666432  258999999999999642              22222111110 0        


Q ss_pred             cccCCCCCcce-EEEEeeeecCCC-hhhHHHhhhhhc
Q 029437          158 VNLADSNVRPL-EVFMCSIVRKMG-YGDGFKWLSQYI  192 (193)
Q Consensus       158 ~~~~~~~~~~~-~~~~~Sa~~g~g-v~el~~~i~~~~  192 (193)
                              ..+ .+++|||++|.| ++++|++|.+.+
T Consensus       173 --------~~~~~~~e~SA~~g~g~v~~lf~~l~~~~  201 (214)
T 3q3j_B          173 --------LGAEIYLEGSAFTSEKSIHSIFRTASMLC  201 (214)
T ss_dssp             --------HTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred             --------cCCCEEEEeccCCCcccHHHHHHHHHHHH
Confidence                    123 789999999998 999999998754

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.96  E-value=1e-28  Score=177.70  Aligned_cols=162  Identities=21%  Similarity=0.261  Sum_probs=120.4

Q ss_pred             hhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEe--C-C--EEEEEEEcCChhhhHhhHHhhcc
Q 029437           13 SLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELSI--G-K--IKFKAFDLGGHQIARRVWKDYYA   86 (193)
Q Consensus        13 ~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~--~-~--~~~~~~D~~G~~~~~~~~~~~~~   86 (193)
                      ++......++|+|+|++|||||||++++.+..+.. ..++.+........  . +  ..+.+|||||+..+......++.
T Consensus         4 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   83 (218)
T 4djt_A            4 SMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYI   83 (218)
T ss_dssp             ------CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHT
T ss_pred             CcccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhh
Confidence            34456678999999999999999999999877654 34555544433332  1 1  78999999999998888888899


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCC
Q 029437           87 KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSN  164 (193)
Q Consensus        87 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (193)
                      .+|++++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+...  ...++.......                
T Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----------------  146 (218)
T 4djt_A           84 GASGAILFFDVTSRITCQNLARWVKEFQAV-VGNEAPIVVCANKIDIKNRQKISKKLVMEVLKG----------------  146 (218)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-HCSSSCEEEEEECTTCC----CCHHHHHHHTTT----------------
T ss_pred             cCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHH----------------
Confidence            999999999999999998888877776433 2246899999999999743  233333222221                


Q ss_pred             CcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          165 VRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                       ....+++|||++|.|++++|++|.+.+
T Consensus       147 -~~~~~~~~Sa~~g~gv~~l~~~l~~~~  173 (218)
T 4djt_A          147 -KNYEYFEISAKTAHNFGLPFLHLARIF  173 (218)
T ss_dssp             -CCCEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred             -cCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence             235799999999999999999998764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=1.7e-28  Score=173.89  Aligned_cols=162  Identities=14%  Similarity=0.146  Sum_probs=120.3

Q ss_pred             hCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee-EEEeC--CEEEEEEEcCChhhhHhhHHhhcccCC
Q 029437           14 LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE-ELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVD   89 (193)
Q Consensus        14 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d   89 (193)
                      |......++|+++|++|||||||++++.+..+.. ..++.+.... .+...  ...+.+|||||+..+..+...++..+|
T Consensus         2 m~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   81 (199)
T 2gf0_A            2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGH   81 (199)
T ss_dssp             ---CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCS
T ss_pred             CccCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCC
Confidence            3344567999999999999999999999887654 3345443322 22233  368999999999999988888999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHcCC-CCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437           90 AVVYLVDAYDKERFAESKKELDALLSDE-ALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADSNVRP  167 (193)
Q Consensus        90 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (193)
                      ++++|+|++++.+++.+..++..+.... ...+.|+++|+||+|+... ...++...... .                ..
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~----------------~~  144 (199)
T 2gf0_A           82 AFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQ-E----------------WK  144 (199)
T ss_dssp             EEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHH-H----------------HT
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHH-H----------------hC
Confidence            9999999999999988887776654321 1357899999999999743 23322222111 0                12


Q ss_pred             eEEEEeeeecCCChhhHHHhhhhhc
Q 029437          168 LEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       168 ~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +.++++||++|.|++++|++|.+.+
T Consensus       145 ~~~~~~Sa~~~~gi~~l~~~l~~~~  169 (199)
T 2gf0_A          145 CAFMETSAKMNYNVKELFQELLTLE  169 (199)
T ss_dssp             CEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             CeEEEEecCCCCCHHHHHHHHHHHH
Confidence            4789999999999999999998765

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.96  E-value=1.8e-28  Score=172.68  Aligned_cols=158  Identities=21%  Similarity=0.280  Sum_probs=121.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      .+..++|+|+|++|+|||||++++.+..+.. ..++.+...  ..+...  ...+.+|||||++.+......++..+|++
T Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   98 (189)
T 2gf9_A           19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   98 (189)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence            3457899999999999999999999988754 345555433  333333  46899999999999888888899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++|+|++++.++..+..|+..+... ...+.|+++|+||+|+...  ...++..+... .                ..+.
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~  160 (189)
T 2gf9_A           99 LLMYDIANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRRLAD-D----------------LGFE  160 (189)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-H----------------HTCE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccCCCHHHHHHHHH-H----------------cCCe
Confidence            9999999999998888887776542 2458999999999999732  22222222111 0                1247


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++++||++|.|++++|++|.+.+
T Consensus       161 ~~~~Sa~~g~gi~~l~~~l~~~i  183 (189)
T 2gf9_A          161 FFEASAKENINVKQVFERLVDVI  183 (189)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            89999999999999999998764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.96  E-value=9.2e-29  Score=170.93  Aligned_cols=156  Identities=20%  Similarity=0.273  Sum_probs=117.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      ..++|+++|++|+|||||++++.+..+.. ..++.+..  ...+..+  ...+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            45899999999999999999999888754 34454433  3344444  3689999999999998888888999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      |+|++++.++..+..|+..+... ...+.|+++++||+|+... ...++...... .                ..+++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~----------------~~~~~~~  143 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRVVTADQGEALAK-E----------------LGIPFIE  143 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTCCSCHHHHHHHHH-H----------------HTCCEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCCcCccCHHHHHHHHH-H----------------cCCeEEE
Confidence            99999999998888888777543 2358999999999999532 23332222111 0                1135799


Q ss_pred             eeeecCCChhhHHHhhhhhc
Q 029437          173 CSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +||++|.|++++|++|.+.+
T Consensus       144 ~Sa~~~~gv~~l~~~l~~~~  163 (170)
T 1g16_A          144 SSAKNDDNVNEIFFTLAKLI  163 (170)
T ss_dssp             CBTTTTBSHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHH
Confidence            99999999999999998764

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=8e-29  Score=171.48  Aligned_cols=158  Identities=15%  Similarity=0.160  Sum_probs=118.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee-EEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE-ELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL   94 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v   94 (193)
                      ..++|+++|++|+|||||++++.+..+.. ..++.+.... .....  ...+.+|||||+..+......++..+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            35899999999999999999999887653 3445443332 22233  36799999999999998888889999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCC-CCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437           95 VDAYDKERFAESKKELDALLSDE-ALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      +|++++.+++....++..+.... ..++.|+++++||+|+...  ....+...... .                ..++++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~-~----------------~~~~~~  144 (172)
T 2erx_A           82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALAR-T----------------WKCAFM  144 (172)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHH-H----------------HTCEEE
T ss_pred             EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHH-H----------------hCCeEE
Confidence            99999999888888877664321 2358999999999998632  22222211110 0                124789


Q ss_pred             EeeeecCCChhhHHHhhhhhcC
Q 029437          172 MCSIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       172 ~~Sa~~g~gv~el~~~i~~~~~  193 (193)
                      ++||++|.|+++++++|.+.++
T Consensus       145 ~~Sa~~~~gi~~l~~~l~~~~~  166 (172)
T 2erx_A          145 ETSAKLNHNVKELFQELLNLEK  166 (172)
T ss_dssp             ECBTTTTBSHHHHHHHHHHTCC
T ss_pred             EecCCCCcCHHHHHHHHHHHHh
Confidence            9999999999999999988653

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.96  E-value=8.3e-29  Score=176.65  Aligned_cols=160  Identities=19%  Similarity=0.305  Sum_probs=121.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      ....++|+|+|++|+|||||++++.+..+.. ..++.+..  ...+...  ...+.+|||||+..+......+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            4567999999999999999999999888664 34454433  2333333  37899999999999888888889999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCC---CCCCCcEEEEEeCCCCCC-CCCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDE---ALANVPFLVLGNKIDIPY-AASEEELRYHLGLSNFTTGKGKVNLADSNVRP  167 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~pviiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (193)
                      ++|+|++++.++..+..|+..+....   ...+.|+++|+||+|+.. ....++....... .               ..
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~---------------~~  148 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS-K---------------NN  148 (207)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH-T---------------TS
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHh-c---------------CC
Confidence            99999999999988888877765432   225789999999999973 2333333322210 1               23


Q ss_pred             eEEEEeeeecCCChhhHHHhhhhhc
Q 029437          168 LEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       168 ~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ..++++||++|.|++++|++|.+.+
T Consensus       149 ~~~~~~Sa~~g~gi~~l~~~l~~~~  173 (207)
T 1vg8_A          149 IPYFETSAKEAINVEQAFQTIARNA  173 (207)
T ss_dssp             CCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            5689999999999999999998764

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.96  E-value=3.3e-28  Score=173.63  Aligned_cols=158  Identities=20%  Similarity=0.285  Sum_probs=123.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      ....++|+|+|++|+|||||++++.+..+.. ..++.+..  ...+.+++  ..+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v   84 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   84 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence            4567899999999999999999999988764 34555443  33455544  5899999999999988888899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++|+|++++.++..+..|+..+... ...+.|+++|+||+|+...  ...++.......                 ..++
T Consensus        85 ilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~  146 (206)
T 2bcg_Y           85 IIVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADA-----------------NKMP  146 (206)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------TTCC
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHH-----------------cCCe
Confidence            9999999999999988888777543 2358999999999999742  233332222110                 1246


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++++||++|.|++++|++|.+.+
T Consensus       147 ~~~~Sa~~g~gi~~l~~~l~~~i  169 (206)
T 2bcg_Y          147 FLETSALDSTNVEDAFLTMARQI  169 (206)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999999999998764

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.96  E-value=5.4e-29  Score=175.28  Aligned_cols=159  Identities=19%  Similarity=0.225  Sum_probs=116.2

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      ..+..++|+++|++|||||||++++.+..+.. ..+|.+... ......  .+.+.+|||+|++.+..+ ..++..+|++
T Consensus        17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~   95 (187)
T 3c5c_A           17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF   95 (187)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence            34677999999999999999999999888664 345555432 223333  468899999999888765 5688999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCC--CCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEA--LANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRP  167 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (193)
                      ++|+|++++++++.+..|+..+.....  ..+.|+++++||+|+..  ....++..+....                 ..
T Consensus        96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~  158 (187)
T 3c5c_A           96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGR-----------------FG  158 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHH-----------------HT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHH-----------------cC
Confidence            999999999999999888887754311  25899999999999963  2333332221110                 12


Q ss_pred             eEEEEeee-ecCCChhhHHHhhhhhc
Q 029437          168 LEVFMCSI-VRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       168 ~~~~~~Sa-~~g~gv~el~~~i~~~~  192 (193)
                      +.+++||| ++|.|++++|++|.+.+
T Consensus       159 ~~~~e~Sa~~~g~gv~~lf~~l~~~i  184 (187)
T 3c5c_A          159 CLFFEVSACLDFEHVQHVFHEAVREA  184 (187)
T ss_dssp             CEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred             CcEEEEeecCccccHHHHHHHHHHHH
Confidence            47899999 89999999999998765

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.96  E-value=2.3e-28  Score=173.63  Aligned_cols=158  Identities=21%  Similarity=0.222  Sum_probs=113.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      .+..++|+++|++|+|||||++++.+..+.. ..++.+.  ....+..++  ..+.+|||||++.+......+++.+|++
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  104 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV  104 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence            4567999999999999999999999888654 3445443  233444444  6799999999999999989999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--------CCCHHHHHHhhCCCccccCCCccccCCC
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--------AASEEELRYHLGLSNFTTGKGKVNLADS  163 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (193)
                      ++|+|++++.++..+..|+..+... ...+.|+++|+||+|+..        ....++...... .              
T Consensus       105 ilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~-~--------------  168 (199)
T 2p5s_A          105 LLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAM-T--------------  168 (199)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHH-H--------------
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHHHH-H--------------
Confidence            9999999999998888877766432 235899999999999851        112221111100 0              


Q ss_pred             CCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          164 NVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                        ..+.+++|||++|.|++++|++|.+.+
T Consensus       169 --~~~~~~~~SA~~g~gv~el~~~l~~~i  195 (199)
T 2p5s_A          169 --YGALFCETSAKDGSNIVEAVLHLAREV  195 (199)
T ss_dssp             --HTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             --cCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence              125789999999999999999998865

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=5.3e-28  Score=173.11  Aligned_cols=158  Identities=14%  Similarity=0.165  Sum_probs=115.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC--ccccCCCCCcc--eeEEEeCC--EEEEEEEcCChhh-hHhhHHhhcccCCE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDER--LVQHQPTQYPT--SEELSIGK--IKFKAFDLGGHQI-ARRVWKDYYAKVDA   90 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~-~~~~~~~~~~~~d~   90 (193)
                      ...+||+++|++|+|||||++++.+..  +....++.+..  ...+..++  +.+.+|||+|... +..+...+++.+|+
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~  114 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA  114 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence            456899999999999999999998644  33333444333  33444544  5678999999876 45566667788999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437           91 VVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPL  168 (193)
Q Consensus        91 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (193)
                      +++|+|++++++|+.+..|+..+.......++|+++|+||+|+..  ....++... +...                ..+
T Consensus       115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~-~a~~----------------~~~  177 (211)
T 2g3y_A          115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRA-CAVV----------------FDC  177 (211)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHH-HHHH----------------HTC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHH-HHHH----------------cCC
Confidence            999999999999999988887775433345899999999999963  233332111 1000                124


Q ss_pred             EEEEeeeecCCChhhHHHhhhhhc
Q 029437          169 EVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       169 ~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .+++|||++|.|++++|++|.+.+
T Consensus       178 ~~~e~SAk~g~~v~elf~~l~~~i  201 (211)
T 2g3y_A          178 KFIETSAAVQHNVKELFEGIVRQV  201 (211)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHH
Confidence            789999999999999999998764

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.9e-28  Score=176.08  Aligned_cols=158  Identities=22%  Similarity=0.260  Sum_probs=118.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      ....++|+|+|++|+|||||++++.+..+.. ..++.+.  ....+...+  ..+.+|||||++.+..++..+++.+|++
T Consensus        10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v   89 (223)
T 3cpj_B           10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA   89 (223)
T ss_dssp             CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred             CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence            3567899999999999999999999988764 3455443  344455555  6899999999999988888899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+..  ....++.......                 ..+.
T Consensus        90 ilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~  151 (223)
T 3cpj_B           90 LIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQE-----------------NQLL  151 (223)
T ss_dssp             EEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHH-----------------cCCE
Confidence            99999999999999888887775432 35899999999999973  3333333222110                 1257


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++++||++|.|++++|++|.+.+
T Consensus       152 ~~~~Sa~~~~gi~~l~~~l~~~i  174 (223)
T 3cpj_B          152 FTETSALNSENVDKAFEELINTI  174 (223)
T ss_dssp             EEECCCC-CCCHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999999999998764

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.96  E-value=5.1e-28  Score=170.42  Aligned_cols=159  Identities=18%  Similarity=0.270  Sum_probs=111.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc-eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~-~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      .+..++|+++|++|||||||++++.+..+... .++.... ...+...+  ..+.+||+||+..+......++..+|+++
T Consensus        18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   97 (190)
T 3con_A           18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   97 (190)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred             ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence            45779999999999999999999998876543 2333322 23344443  56999999999999888889999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC-CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY-AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      +|+|++++.++..+..|+..+.......+.|+++|+||+|+.. ....++..+....                 ..++++
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~  160 (190)
T 3con_A           98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKS-----------------YGIPFI  160 (190)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH-----------------HTCCEE
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHH-----------------cCCeEE
Confidence            9999999999988888877765433335899999999999974 2333333222110                 113589


Q ss_pred             EeeeecCCChhhHHHhhhhhc
Q 029437          172 MCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       172 ~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +|||++|.|+++++++|.+.+
T Consensus       161 ~~Sa~~~~gi~~l~~~l~~~~  181 (190)
T 3con_A          161 ETSAKTRQGVEDAFYTLVREI  181 (190)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHH
Confidence            999999999999999998764

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.96  E-value=6.4e-28  Score=171.60  Aligned_cols=172  Identities=16%  Similarity=0.282  Sum_probs=119.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      ...++|+++|++|+|||||++++.+..+.. ..+|..... ..+..++  ..+.+|||||++.+......++..+|++++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence            467899999999999999999999888764 334544332 3344444  689999999999998888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      |+|++++++++.+...|...+.. ..++.|+++|+||+|+.......+.............. ...+.+. .....+++|
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~-~~~~~~~~~  179 (201)
T 2gco_A          103 CFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEE-GRDMANR-ISAFGYLEC  179 (201)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHH-HSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHH-HHHHHHH-TTCSEEEEC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHH-HHHHHHh-CCCcEEEEe
Confidence            99999999998885444444332 22589999999999997542222211111111100000 0000000 012378999


Q ss_pred             eeecCCChhhHHHhhhhhc
Q 029437          174 SIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~~  192 (193)
                      ||++|.|++++|++|.+.+
T Consensus       180 SA~~g~gi~~l~~~i~~~~  198 (201)
T 2gco_A          180 SAKTKEGVREVFEMATRAG  198 (201)
T ss_dssp             CTTTCTTHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHH
Confidence            9999999999999998753

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.96  E-value=6.7e-29  Score=177.13  Aligned_cols=173  Identities=18%  Similarity=0.269  Sum_probs=118.5

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      ..++.++|+++|++|||||||++++.+..+.. ..++.... ...+..  ..+.+.+|||||++.+......++..+|++
T Consensus        26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  105 (204)
T 4gzl_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  105 (204)
T ss_dssp             ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            35678999999999999999999999887764 33444322 222333  346677999999999999888899999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           92 VYLVDAYDKERFAESK-KELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      ++|+|++++.++.... .|+..+... . .+.|+++|+||+|+.......+............... ..+.+ .....++
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~-~~~~~-~~~~~~~  181 (204)
T 4gzl_A          106 LICFSLVSPASFENVRAKWYPEVRHH-C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG-LAMAK-EIGAVKY  181 (204)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH-C-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH-HHHHH-HTTCSEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEechhhccchhhhhhhhccccccccHHHH-HHHHH-hcCCcEE
Confidence            9999999999998887 444444332 2 6899999999999975433222222221111100000 00000 0022469


Q ss_pred             EEeeeecCCChhhHHHhhhhhc
Q 029437          171 FMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       171 ~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++|||++|.|++++|++|.+.+
T Consensus       182 ~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          182 LECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             EECCTTTCTTHHHHHHHHHHTT
T ss_pred             EEeeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998764

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.96  E-value=5.3e-29  Score=179.62  Aligned_cols=158  Identities=20%  Similarity=0.301  Sum_probs=121.5

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEE--e--CCEEEEEEEcCChhhhHhhHHhhcccCCE
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELS--I--GKIKFKAFDLGGHQIARRVWKDYYAKVDA   90 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~--~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~   90 (193)
                      .....+||+++|++|||||||++++....+.. ..++.+.......  .  ....+.+|||||++.+..+...+++.+|+
T Consensus        11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   90 (221)
T 3gj0_A           11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC   90 (221)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence            35678999999999999999999977666543 3456654443332  2  34789999999999998888889999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           91 VVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        91 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      +++|+|++++.++..+..|+..+...  ..++|+++|+||+|+.......+..     ...            ....+.+
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~-----~~~------------~~~~~~~  151 (221)
T 3gj0_A           91 AIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI-----VFH------------RKKNLQY  151 (221)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHH--STTCCEEEEEECTTSSSCSSCGGGC-----CHH------------HHHTCEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCccccccccHHHH-----HHH------------HHcCCEE
Confidence            99999999999999998888887653  2489999999999997432211100     000            0023578


Q ss_pred             EEeeeecCCChhhHHHhhhhhc
Q 029437          171 FMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       171 ~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++|||++|.|++++|++|.+.+
T Consensus       152 ~~~Sa~~~~gi~~l~~~l~~~l  173 (221)
T 3gj0_A          152 YDISAKSNYNFEKPFLWLARKL  173 (221)
T ss_dssp             EECBGGGTBTTTHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHH
Confidence            9999999999999999998764

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=6e-28  Score=172.90  Aligned_cols=158  Identities=18%  Similarity=0.268  Sum_probs=120.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      ....++|+|+|++|+|||||++++.+..+.. ..++.+.  ....+.+.+  ..+.+|||||++.+...+..++..+|++
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   96 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI   96 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            3567999999999999999999999888653 4455543  344555655  7899999999999988888889999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      ++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+... ...++...... .                ..+++
T Consensus        97 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~----------------~~~~~  158 (213)
T 3cph_A           97 ILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK-E----------------LGIPF  158 (213)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHHH-H----------------HTCCE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHHH-H----------------cCCEE
Confidence            99999999999988888887775432 247999999999999532 23232221111 0                11357


Q ss_pred             EEeeeecCCChhhHHHhhhhhc
Q 029437          171 FMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       171 ~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++||++|.|++++|++|.+.+
T Consensus       159 ~~~Sa~~~~gi~~l~~~l~~~~  180 (213)
T 3cph_A          159 IESSAKNDDNVNEIFFTLAKLI  180 (213)
T ss_dssp             EECBTTTTBSSHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHH
Confidence            9999999999999999998764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=6.1e-28  Score=170.62  Aligned_cols=171  Identities=19%  Similarity=0.243  Sum_probs=119.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      ...++|+++|++|+|||||++++.+..+.. ..+|.+... ..+...+  ..+.+|||||++.+......+++.+|++++
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   95 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI   95 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence            366899999999999999999999888764 345554433 3344444  789999999999998888889999999999


Q ss_pred             EEECCChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           94 LVDAYDKERFAESK-KELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      |+|+++++++..+. .|+..+...  .++.|+++|+||+|+.......+.............. ...+.+. .....+++
T Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~-~~~~~~~~  171 (194)
T 2atx_A           96 CFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQ-GQKLAKE-IGACCYVE  171 (194)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHH-HHHHHHH-HTCSCEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHH-HHHHHHH-cCCcEEEE
Confidence            99999999998887 565555432  2489999999999997532111110000000000000 0000000 01136899


Q ss_pred             eeeecCCChhhHHHhhhhhc
Q 029437          173 CSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~~  192 (193)
                      |||++|.|++++|++|.+.+
T Consensus       172 ~Sa~~g~gi~~l~~~l~~~i  191 (194)
T 2atx_A          172 CSALTQKGLKTVFDEAIIAI  191 (194)
T ss_dssp             CCTTTCTTHHHHHHHHHHHH
T ss_pred             eeCCCCCCHHHHHHHHHHHH
Confidence            99999999999999998764

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.95  E-value=2.4e-28  Score=171.32  Aligned_cols=171  Identities=17%  Similarity=0.253  Sum_probs=118.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      +..++|+++|++|+|||||++++.+..+.. ..+|..... ..+...  ...+.+|||||++.+......++..+|++++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            567899999999999999999999887754 334544332 233333  3677899999999998888888999999999


Q ss_pred             EEECCChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           94 LVDAYDKERFAESK-KELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      |+|++++.++.... .|+..+...  .++.|+++++||+|+.......+.............. ...+.+. ....++++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~-~~~~~~~~  158 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ-GLAMAKE-IGAVKYLE  158 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHH-HHHHHHH-TTCSEEEE
T ss_pred             EEECCChhhHHHHHHHHHHHHHHh--CCCCCEEEEeEcccccccchhhhhhcccccccCCHHH-HHHHHHh-cCCcEEEE
Confidence            99999999998887 455555332  2489999999999997432222211111111100000 0000000 01237999


Q ss_pred             eeeecCCChhhHHHhhhhhc
Q 029437          173 CSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~~  192 (193)
                      |||++|.|++++|++|.+.+
T Consensus       159 ~Sa~~g~gi~~l~~~l~~~~  178 (186)
T 1mh1_A          159 CSALTQRGLKTVFDEAIRAV  178 (186)
T ss_dssp             CCTTTCTTHHHHHHHHHHHH
T ss_pred             ecCCCccCHHHHHHHHHHHH
Confidence            99999999999999998765

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=9.6e-28  Score=171.44  Aligned_cols=171  Identities=16%  Similarity=0.256  Sum_probs=116.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce-eEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      +..++|+++|++|||||||++++.+..+... .+|.+... ..+...+  ..+.+|||||++.+......++..+|++++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence            5678999999999999999999999887643 34444332 3344444  689999999999998888889999999999


Q ss_pred             EEECCChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           94 LVDAYDKERFAESK-KELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      |+|++++.++..+. .|+..+..  ..++.|+++|+||+|+.......+....+......... ...+++. .....+++
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~-~~~~~~~~  178 (207)
T 2fv8_A          103 CFSVDSPDSLENIPEKWVPEVKH--FCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDD-GRAMAVR-IQAYDYLE  178 (207)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHH--HSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHH-HHHHHHH-TTCSEEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHHH--hCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHH-HHHHHHh-cCCCEEEE
Confidence            99999999998884 44444432  22589999999999997432222222222111100000 0000000 01237899


Q ss_pred             eeeecCCChhhHHHhhhhhc
Q 029437          173 CSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~~  192 (193)
                      |||++|.|++++|++|.+.+
T Consensus       179 ~SA~~g~gi~el~~~l~~~i  198 (207)
T 2fv8_A          179 CSAKTKEGVREVFETATRAA  198 (207)
T ss_dssp             CCTTTCTTHHHHHHHHHHHH
T ss_pred             eeCCCCCCHHHHHHHHHHHH
Confidence            99999999999999998753

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.95  E-value=4.9e-29  Score=174.31  Aligned_cols=157  Identities=17%  Similarity=0.179  Sum_probs=107.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce---eEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS---EELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~---~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      ++.++|+++|++|+|||||++++.+..+.. ..+|.+...   ..+......+.+|||||++.+...+..+++.+|++++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   85 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   85 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence            457899999999999999999999887654 334443221   1122334677899999999999888889999999999


Q ss_pred             EEECCChhhHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCCCCCCCC------------HHHHHHhhCCCccccCCCcccc
Q 029437           94 LVDAYDKERFAESKK-ELDALLSDEALANVPFLVLGNKIDIPYAAS------------EEELRYHLGLSNFTTGKGKVNL  160 (193)
Q Consensus        94 v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~  160 (193)
                      |+|++++.+++.+.. |+..+...  .++.|+++++||+|+.....            .++... +....          
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~-~~~~~----------  152 (182)
T 3bwd_D           86 AFSLISKASYENVSKKWIPELKHY--APGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEE-LKKLI----------  152 (182)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHH-HHHHH----------
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHH-HHHHc----------
Confidence            999999999988874 55554332  24899999999999864321            111110 00000          


Q ss_pred             CCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          161 ADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       161 ~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                           ....+++|||++|.|++++|++|.+.+
T Consensus       153 -----~~~~~~~~Sa~~~~gi~~l~~~l~~~i  179 (182)
T 3bwd_D          153 -----GAPAYIECSSKSQENVKGVFDAAIRVV  179 (182)
T ss_dssp             -----TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             -----CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence                 113789999999999999999998764

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.95  E-value=5.6e-28  Score=171.71  Aligned_cols=172  Identities=13%  Similarity=0.165  Sum_probs=112.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      ....++|+++|++|+|||||++++.+..+.. ..+|.+... ..+..++  +.+.+|||||++.+..++..++..+|+++
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   96 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL   96 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence            4678999999999999999999999888664 345554332 2344444  57889999999999888888899999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437           93 YLVDAYDKERFAESK-KELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      +|+|++++.++..+. .|+..+...  .++.|+++|+||+|+.......+.............. ...+.+ ......++
T Consensus        97 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-~~~~~~-~~~~~~~~  172 (201)
T 2q3h_A           97 LCFSVVSPSSFQNVSEKWVPEIRCH--CPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEA-AKLLAE-EIKAASYI  172 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--CSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH-HHHHHH-HHTCSEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHH-HHHHHH-hcCCcEEE
Confidence            999999999998887 565555432  2489999999999996421100000000000000000 000000 00123789


Q ss_pred             EeeeecCCChhhHHHhhhhhc
Q 029437          172 MCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       172 ~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +|||++|.|++++|++|.+.+
T Consensus       173 ~~Sa~~g~gi~~l~~~l~~~~  193 (201)
T 2q3h_A          173 ECSALTQKNLKEVFDAAIVAG  193 (201)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEecCCCCCHHHHHHHHHHHH
Confidence            999999999999999998754

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.95  E-value=8.8e-28  Score=172.53  Aligned_cols=171  Identities=20%  Similarity=0.280  Sum_probs=102.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      ...++|+++|++|+|||||++++.+..+.. ..+|.... ...+...  ...+.+|||||++.+...+..++..+|++++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~  111 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL  111 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence            467999999999999999999999887654 33444332 2233443  3589999999999999988889999999999


Q ss_pred             EEECCChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           94 LVDAYDKERFAESK-KELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      |+|++++.++..+. .|+..+...  .+++|+++|+||+|+.......+............... ..+.+. .....+++
T Consensus       112 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~-~~~~~~~~  187 (214)
T 2j1l_A          112 CFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRG-QEMARS-VGAVAYLE  187 (214)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHH-HHHHHH-TTCSEEEE
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHH-HHHHHh-cCCCEEEE
Confidence            99999999998887 455555332  25899999999999975432222222211111100000 000000 01237899


Q ss_pred             eeeecCCChhhHHHhhhhhc
Q 029437          173 CSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~~  192 (193)
                      |||++|.|++++|++|.+.+
T Consensus       188 ~SA~~g~gi~el~~~l~~~~  207 (214)
T 2j1l_A          188 CSARLHDNVHAVFQEAAEVA  207 (214)
T ss_dssp             CBTTTTBSHHHHHHHHHHHH
T ss_pred             ecCCCCCCHHHHHHHHHHHH
Confidence            99999999999999998754

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.95  E-value=1.3e-27  Score=166.56  Aligned_cols=163  Identities=20%  Similarity=0.215  Sum_probs=118.7

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CC--CCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QP--TQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      ...+.++|+++|++|||||||++++.+..+... .+  +.......+..++..+.+|||||++.+...+...+..+|+++
T Consensus         4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            345778999999999999999999998887642 22  344555667788889999999999998888778889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      +|+|++++... ...+.+....    ..+.|+++|+||+|+... ..+++...+.....        +.......+.+++
T Consensus        84 ~v~d~~~~~~~-~~~~~l~~~~----~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~--------~~~~~~~~~~~~~  149 (178)
T 2lkc_A           84 LVVAADDGVMP-QTVEAINHAK----AANVPIIVAINKMDKPEA-NPDRVMQELMEYNL--------VPEEWGGDTIFCK  149 (178)
T ss_dssp             EEEETTCCCCH-HHHHHHHHHG----GGSCCEEEEEETTTSSCS-CHHHHHHHHTTTTC--------CBTTTTSSEEEEE
T ss_pred             EEEECCCCCcH-HHHHHHHHHH----hCCCCEEEEEECccCCcC-CHHHHHHHHHhcCc--------ChhHcCCcccEEE
Confidence            99999884221 1222233332    247899999999999753 34444444332110        1111112378999


Q ss_pred             eeeecCCChhhHHHhhhhhc
Q 029437          173 CSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~~  192 (193)
                      |||++|.|++++|++|.+.+
T Consensus       150 ~Sa~~~~gv~~l~~~l~~~~  169 (178)
T 2lkc_A          150 LSAKTKEGLDHLLEMILLVS  169 (178)
T ss_dssp             CCSSSSHHHHHHHHHHHHHH
T ss_pred             EecCCCCCHHHHHHHHHHhh
Confidence            99999999999999998764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.95  E-value=2.3e-28  Score=171.49  Aligned_cols=171  Identities=23%  Similarity=0.277  Sum_probs=116.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      ....++|+++|++|+|||||++++.+..+.. ..||.+... ..+..  ....+.+|||||++.+......+++.+|+++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   83 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   83 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence            3567899999999999999999999988754 345554332 22333  3478999999999999888888999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC-HHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           93 YLVDAYDKERFAES-KKELDALLSDEALANVPFLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        93 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      +|+|++++.++..+ ..|+..+...  .++.|+++++||+|+..... ..++.+...... .... ...+.+. .....+
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v-~~~~-~~~~~~~-~~~~~~  158 (184)
T 1m7b_A           84 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPV-SYDQ-GANMAKQ-IGAATY  158 (184)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCC-CHHH-HHHHHHH-HTCSEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCC-CHHH-HHHHHHH-cCCcEE
Confidence            99999999999888 4555544322  25899999999999963210 001100000000 0000 0000000 012578


Q ss_pred             EEeeee-cCCChhhHHHhhhhhc
Q 029437          171 FMCSIV-RKMGYGDGFKWLSQYI  192 (193)
Q Consensus       171 ~~~Sa~-~g~gv~el~~~i~~~~  192 (193)
                      ++|||+ +|.|++++|++|.+.+
T Consensus       159 ~e~Sa~~~~~gi~~l~~~i~~~~  181 (184)
T 1m7b_A          159 IECSALQSENSVRDIFHVATLAC  181 (184)
T ss_dssp             EECBTTTBHHHHHHHHHHHHHHH
T ss_pred             EEeeecCCCcCHHHHHHHHHHHH
Confidence            999998 6999999999998754

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.95  E-value=1.1e-28  Score=176.89  Aligned_cols=157  Identities=17%  Similarity=0.204  Sum_probs=116.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      ...++|+++|++|+|||||++++.+..+.. ..+|.+... ..+..+  ...+.+|||||++.+..++..+++.+|++++
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il   86 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   86 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence            467999999999999999999999888764 345555433 233333  3789999999999999888889999999999


Q ss_pred             EEECCChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCCCCCC----------CHHHHHHhhCCCccccCCCccccCC
Q 029437           94 LVDAYDKERFAESK-KELDALLSDEALANVPFLVLGNKIDIPYAA----------SEEELRYHLGLSNFTTGKGKVNLAD  162 (193)
Q Consensus        94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  162 (193)
                      |+|+++++++..+. .|+..+...  .++.|+++|+||+|+....          ..++..+... ..            
T Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~-~~------------  151 (212)
T 2j0v_A           87 AFSLISKASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRK-QI------------  151 (212)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHH-HH------------
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHH-Hc------------
Confidence            99999999998887 555555332  2489999999999986431          1111111100 00            


Q ss_pred             CCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          163 SNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       163 ~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                         ....+++|||++|.|++++|++|.+.+
T Consensus       152 ---~~~~~~~~Sa~~g~gi~~l~~~l~~~~  178 (212)
T 2j0v_A          152 ---GAAAYIECSSKTQQNVKAVFDTAIKVV  178 (212)
T ss_dssp             ---TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ---CCceEEEccCCCCCCHHHHHHHHHHHH
Confidence               113789999999999999999998754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.95  E-value=6.9e-27  Score=165.19  Aligned_cols=158  Identities=14%  Similarity=0.172  Sum_probs=110.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC--ccccCCCCCcc--eeEEEeCC--EEEEEEEcCChhh-hHhhHHhhcccCCE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDER--LVQHQPTQYPT--SEELSIGK--IKFKAFDLGGHQI-ARRVWKDYYAKVDA   90 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~-~~~~~~~~~~~~d~   90 (193)
                      +..++|+++|++|||||||++++.+..  +....++.+..  ...+..++  ..+.+|||+|... .+.+...+++.+|+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            456899999999999999999998633  33333333322  33445544  4678999999765 34455566788999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437           91 VVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPL  168 (193)
Q Consensus        91 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (193)
                      +++|+|+++++++.....|+..+.......+.|+++++||+|+..  ....++... +...                ..+
T Consensus        84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~-~a~~----------------~~~  146 (192)
T 2cjw_A           84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRA-XAVV----------------FDX  146 (192)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHH-HHHH----------------TTC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHH-HHHH----------------hCC
Confidence            999999999999999988887765433345899999999999863  222222111 1000                124


Q ss_pred             EEEEeeeecCCChhhHHHhhhhhc
Q 029437          169 EVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       169 ~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .+++|||++|.|++++|++|.+.+
T Consensus       147 ~~~e~SA~~g~~v~~lf~~l~~~~  170 (192)
T 2cjw_A          147 KFIETSAAVQHNVKELFEGIVRQV  170 (192)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             ceEEeccccCCCHHHHHHHHHHHH
Confidence            689999999999999999998754

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.95  E-value=7.2e-28  Score=171.94  Aligned_cols=171  Identities=23%  Similarity=0.283  Sum_probs=116.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce-eEEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTS-EELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~-~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      ....++|+++|++|+|||||++++.+..+... .+|.+... ..+..  ....+.+|||||++.+..+...++..+|+++
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  104 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL  104 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence            35679999999999999999999999887643 45554332 22332  3478999999999999888888999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC-HHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           93 YLVDAYDKERFAES-KKELDALLSDEALANVPFLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        93 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      +|+|++++.++..+ ..|+..+...  .++.|+++|+||+|+..... ..++.+...... .... ...+++. .....+
T Consensus       105 lv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v-~~~~-~~~~~~~-~~~~~~  179 (205)
T 1gwn_A          105 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPV-SYDQ-GANMAKQ-IGAATY  179 (205)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCC-CHHH-HHHHHHH-HTCSEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCC-CHHH-HHHHHHH-cCCCEE
Confidence            99999999999888 4555555332  25899999999999963210 000100000000 0000 0000000 012578


Q ss_pred             EEeeee-cCCChhhHHHhhhhhc
Q 029437          171 FMCSIV-RKMGYGDGFKWLSQYI  192 (193)
Q Consensus       171 ~~~Sa~-~g~gv~el~~~i~~~~  192 (193)
                      ++|||+ +|.|++++|++|.+.+
T Consensus       180 ~e~SAk~~~~gv~~lf~~l~~~~  202 (205)
T 1gwn_A          180 IECSALQSENSVRDIFHVATLAC  202 (205)
T ss_dssp             EECCTTTCHHHHHHHHHHHHHHH
T ss_pred             EEeeeccCCcCHHHHHHHHHHHH
Confidence            999999 6899999999998753

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.95  E-value=1.3e-28  Score=174.82  Aligned_cols=155  Identities=23%  Similarity=0.330  Sum_probs=113.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CC--CCCcceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QP--TQYPTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~--t~~~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      ...++|+|+|++|||||||++++.+..+... .+  +.......+...+  ..+.+|||||++.+......+++.+|+++
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  110 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII  110 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence            4569999999999999999999998876542 23  3334455556655  68999999999999888888899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC-----CHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA-----SEEELRYHLGLSNFTTGKGKVNLADSNVRP  167 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (193)
                      +|+|++++.++..+..|+..+.. ....+.|+++|+||+|+....     ...++...++                    
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~--------------------  169 (199)
T 3l0i_B          111 VVYDVTDQESFNNVKQWLQEIDR-YASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG--------------------  169 (199)
T ss_dssp             ECC-CCCSHHHHHHHHHHHHHHS-CC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTT--------------------
T ss_pred             EEEECCCHHHHHHHHHHHHHHHH-hccCCCCEEEEEECccCCccccCCHHHHHHHHHHcC--------------------
Confidence            99999999999999888877754 334589999999999997321     1112222222                    


Q ss_pred             eEEEEeeeecCCChhhHHHhhhhhcC
Q 029437          168 LEVFMCSIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       168 ~~~~~~Sa~~g~gv~el~~~i~~~~~  193 (193)
                      ++++++||++|.|++++|++|.+.+.
T Consensus       170 ~~~~~vSA~~g~gv~~l~~~l~~~l~  195 (199)
T 3l0i_B          170 IPFLETSAKNATNVEQSFMTMAAEIK  195 (199)
T ss_dssp             CCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35689999999999999999988763

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.95  E-value=2.1e-26  Score=158.92  Aligned_cols=148  Identities=30%  Similarity=0.338  Sum_probs=107.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCEEEEEEEcCChhhhH------hhHHhhcc--c
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQIAR------RVWKDYYA--K   87 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~~--~   87 (193)
                      ..++|+++|++|||||||++++.+..+. ...|  |.......+.+.+..+.+|||||+..+.      .+...++.  .
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   81 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK   81 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence            4579999999999999999999987643 2223  3445566677778999999999987653      33344544  7


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CC--CHHHHHHhhCCCccccCCCccccCCC
Q 029437           88 VDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AA--SEEELRYHLGLSNFTTGKGKVNLADS  163 (193)
Q Consensus        88 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (193)
                      +|++++|+|+++.++.   ..|+..+..    .+.|+++++||+|+..  ..  ...++.+.++                
T Consensus        82 ~~~~i~v~D~~~~~~~---~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------  138 (165)
T 2wji_A           82 PDLVVNIVDATALERN---LYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG----------------  138 (165)
T ss_dssp             CSEEEEEEETTCHHHH---HHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT----------------
T ss_pred             CCEEEEEecCCchhHh---HHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHhC----------------
Confidence            9999999999886543   345555433    3789999999999852  11  2233333332                


Q ss_pred             CCcceEEEEeeeecCCChhhHHHhhhhhcC
Q 029437          164 NVRPLEVFMCSIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~~~  193 (193)
                          .++++|||++|.|++++|++|.+.++
T Consensus       139 ----~~~~~~SA~~~~~v~~l~~~l~~~~~  164 (165)
T 2wji_A          139 ----VKVVPLSAAKKMGIEELKKAISIAVK  164 (165)
T ss_dssp             ----SCEEECBGGGTBSHHHHHHHHHHHTT
T ss_pred             ----CCEEEEEcCCCCCHHHHHHHHHHHhh
Confidence                35789999999999999999988764

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.95  E-value=3.2e-27  Score=167.37  Aligned_cols=166  Identities=16%  Similarity=0.215  Sum_probs=112.5

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce--eE--EE-eCCEEEEEEEcCChhhhHhhH---Hhhccc
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTS--EE--LS-IGKIKFKAFDLGGHQIARRVW---KDYYAK   87 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~--~~-~~~~~~~~~D~~G~~~~~~~~---~~~~~~   87 (193)
                      ..++.+||+++|++|||||||++++.+........+.....  ..  +. .....+.+|||+|++.+....   ..+++.
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   95 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG   95 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc
Confidence            35678999999999999999999888754333222222222  22  22 345899999999999887776   788899


Q ss_pred             CCEEEEEEECCCh--hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH----HHHHHhhCCCccccCCCccccC
Q 029437           88 VDAVVYLVDAYDK--ERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE----EELRYHLGLSNFTTGKGKVNLA  161 (193)
Q Consensus        88 ~d~vl~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  161 (193)
                      +|++++|+|++++  +++..+..|+.....  ..++.|+++|+||+|+......    .++............       
T Consensus        96 ~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~-------  166 (196)
T 3llu_A           96 TGALIYVIDAQDDYMEALTRLHITVSKAYK--VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAG-------  166 (196)
T ss_dssp             CSEEEEEEETTSCCHHHHHHHHHHHHHHHH--HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTT-------
T ss_pred             CCEEEEEEECCCchHHHHHHHHHHHHHHHh--cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhh-------
Confidence            9999999999997  667777777776532  2358999999999998642111    111111111110000       


Q ss_pred             CCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          162 DSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       162 ~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                       .....+.+++|||++ .|++++|+.|.+.+
T Consensus       167 -~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          167 -LEKLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             -CTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             -hhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence             001347899999999 99999999998764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.94  E-value=8.5e-27  Score=163.60  Aligned_cols=159  Identities=13%  Similarity=0.155  Sum_probs=110.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC--Cccc-cCCCCCcceeEEEe-------CCEEEEEEEcCChhhhHhhHHhhcccCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDE--RLVQ-HQPTQYPTSEELSI-------GKIKFKAFDLGGHQIARRVWKDYYAKVD   89 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~--~~~~-~~~t~~~~~~~~~~-------~~~~~~~~D~~G~~~~~~~~~~~~~~~d   89 (193)
                      +++|+++|++|||||||++++.+.  .+.. ..+|.+........       ....+.+|||+|++.+..+...++..++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999985  3433 45566654433321       3568999999999999888888889999


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHH----HHHHhhCCCccccCCCccccCCCC
Q 029437           90 AVVYLVDAYDK-ERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEE----ELRYHLGLSNFTTGKGKVNLADSN  164 (193)
Q Consensus        90 ~vl~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  164 (193)
                      ++++|+|++++ .++..+..|+..+...  .++.|+++|+||+|+.......    +..+.+....            ..
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~------------~~  147 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKAR--ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKR------------GF  147 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHH--CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCT------------TS
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhh--CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhc------------CC
Confidence            99999999987 5788888888777543  2478999999999996432111    1112221111            00


Q ss_pred             CcceEEEEeeeecCC-ChhhHHHhhhhhc
Q 029437          165 VRPLEVFMCSIVRKM-GYGDGFKWLSQYI  192 (193)
Q Consensus       165 ~~~~~~~~~Sa~~g~-gv~el~~~i~~~~  192 (193)
                      .....++++||++|. |++++++.|.+.+
T Consensus       148 ~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~  176 (184)
T 2zej_A          148 PAIRDYHFVNATEESDALAKLRKTIINES  176 (184)
T ss_dssp             CEEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred             cchhheEEEecccCchhHHHHHHHHHHHH
Confidence            012358999999997 9999999987654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.94  E-value=1.3e-26  Score=158.83  Aligned_cols=149  Identities=18%  Similarity=0.200  Sum_probs=105.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc--cCC--CCCcceeEEEeCCEEEEEEEcCChhh-------hHhhHHhhcccCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ--HQP--TQYPTSEELSIGKIKFKAFDLGGHQI-------ARRVWKDYYAKVD   89 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~~d   89 (193)
                      .+|+++|++|+|||||++++.+..+..  ..+  +.......+...+..+.+|||||+..       +.......++.+|
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   81 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE   81 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence            589999999999999999999887542  222  33455566777888999999999876       4555667789999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           90 AVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        90 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++++|+|++++.+.  ...++..++..   .+.|+++++||+|+...  .++..+..  ..               ....
T Consensus        82 ~~i~v~d~~~~~~~--~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~~--~~---------------~~~~  137 (161)
T 2dyk_A           82 VVLFAVDGRAELTQ--ADYEVAEYLRR---KGKPVILVATKVDDPKH--ELYLGPLY--GL---------------GFGD  137 (161)
T ss_dssp             EEEEEEESSSCCCH--HHHHHHHHHHH---HTCCEEEEEECCCSGGG--GGGCGGGG--GG---------------SSCS
T ss_pred             EEEEEEECCCcccH--hHHHHHHHHHh---cCCCEEEEEECcccccc--hHhHHHHH--hC---------------CCCC
Confidence            99999999885332  22333333332   47899999999999743  11111100  00               1125


Q ss_pred             EEEeeeecCCChhhHHHhhhhhcC
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~~  193 (193)
                      +++|||++|.|++++|++|.+.+.
T Consensus       138 ~~~~Sa~~~~gv~~l~~~l~~~l~  161 (161)
T 2dyk_A          138 PIPTSSEHARGLEELLEAIWERLP  161 (161)
T ss_dssp             CEECBTTTTBSHHHHHHHHHHHCC
T ss_pred             eEEEecccCCChHHHHHHHHHhCc
Confidence            799999999999999999998763

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.89  E-value=1.6e-28  Score=175.03  Aligned_cols=173  Identities=17%  Similarity=0.241  Sum_probs=117.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc-eeE--EEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPT-SEE--LSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~-~~~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      ..+.++|+++|++|+|||||++++.+..+... .+|.... ...  +......+.+|||||++.+......+++.+|+++
T Consensus        27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            35679999999999999999999998776543 3333322 122  2234467789999999999988888999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      +|+|++++.++......|...+... .++.|+++|+||+|+.......+............ .....+++. ....++++
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~-~~~~~~~~  183 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY-PQGLAMAKE-IGAVKYLE  183 (204)
Confidence            9999999999888874333333322 23899999999999974322211111111001000 000011111 12237899


Q ss_pred             eeeecCCChhhHHHhhhhhc
Q 029437          173 CSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~~  192 (193)
                      |||++|.|++++|++|.+.+
T Consensus       184 vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          184 CSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            99999999999999998764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.94  E-value=3.3e-26  Score=161.69  Aligned_cols=154  Identities=19%  Similarity=0.253  Sum_probs=104.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCCEEEEEEEcCC----------hhhhHhhHHhh
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGKIKFKAFDLGG----------HQIARRVWKDY   84 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~~~~~~~D~~G----------~~~~~~~~~~~   84 (193)
                      ...++|+|+|++|+|||||++++.+..+.. ..++.+.+.  .....+ ..+.+|||||          ++.+..+...+
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   99 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSEREAWGRMIETY   99 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-CcEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence            357899999999999999999999887443 333333222  222233 3789999999          77777777777


Q ss_pred             cccC---CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH----HHHhhCCCccccCCCc
Q 029437           85 YAKV---DAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE----LRYHLGLSNFTTGKGK  157 (193)
Q Consensus        85 ~~~~---d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~  157 (193)
                      +..+   |++++|+|++++.+..... .+. .+..   .+.|+++|+||+|+.......+    +.+.+...        
T Consensus       100 ~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~-~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~--------  166 (195)
T 1svi_A          100 ITTREELKAVVQIVDLRHAPSNDDVQ-MYE-FLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNID--------  166 (195)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHHHH-HHH-HHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCC--------
T ss_pred             HhhhhcCCEEEEEEECCCCCCHHHHH-HHH-HHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHccc--------
Confidence            7766   9999999998876654421 122 2221   5789999999999975433332    32223211        


Q ss_pred             cccCCCCCcceEEEEeeeecCCChhhHHHhhhhhcC
Q 029437          158 VNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       158 ~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~~  193 (193)
                              ...+++++||++|.|+++++++|.+.++
T Consensus       167 --------~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          167 --------PEDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             --------TTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             --------CCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence                    2368999999999999999999988763

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.94  E-value=4.4e-26  Score=160.85  Aligned_cols=157  Identities=20%  Similarity=0.243  Sum_probs=108.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeE-EEeCCEEEEEEEcCC----------hhhhHhhHHhhcc
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEE-LSIGKIKFKAFDLGG----------HQIARRVWKDYYA   86 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~D~~G----------~~~~~~~~~~~~~   86 (193)
                      ...++|+++|++|||||||++++.+..+....++.+..... ....+..+.+|||||          +..+..+...++.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~  100 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFK  100 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHh
Confidence            45689999999999999999999998866555555443322 222244688999999          6667777666666


Q ss_pred             cC---CEEEEEEECCChhhH--HHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccC
Q 029437           87 KV---DAVVYLVDAYDKERF--AESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLA  161 (193)
Q Consensus        87 ~~---d~vl~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (193)
                      .+   |++++|+|+++..+.  ..+..++..       .+.|+++|+||+|+..........+......           
T Consensus       101 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~-----------  162 (195)
T 3pqc_A          101 NRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVF-----------  162 (195)
T ss_dssp             HCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHH-----------
T ss_pred             cCcCceEEEEEecCCCCCCHHHHHHHHHHHH-------cCCCEEEEEEChhcCChHHHHHHHHHHHHHH-----------
Confidence            55   999999999775332  222223222       2789999999999975443333322222111           


Q ss_pred             CCCCcceEEEEeeeecCCChhhHHHhhhhhcC
Q 029437          162 DSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       162 ~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~~  193 (193)
                       .....+++++|||++|.|++++|++|.+.++
T Consensus       163 -~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          163 -SKYGEYTIIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             -HSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             -hhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence             0002357899999999999999999988763

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.93  E-value=1.4e-25  Score=162.47  Aligned_cols=158  Identities=14%  Similarity=0.149  Sum_probs=108.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-C--CCCCcceeEEEeCCEEEEEEEcCCh------hh----hHhhHHhh
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH-Q--PTQYPTSEELSIGKIKFKAFDLGGH------QI----ARRVWKDY   84 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~--~t~~~~~~~~~~~~~~~~~~D~~G~------~~----~~~~~~~~   84 (193)
                      ...++|+|+|++|||||||++++.+..+... .  .|...........+..+.+|||||+      +.    +.. ...+
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~-~~~~  105 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTT-ITAL  105 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHH-HHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHH-HHHh
Confidence            4678999999999999999999999887521 1  2444455556667889999999998      33    222 2344


Q ss_pred             cccCCEEEEEEECCChhhHH--HHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC--HHH--HHHhhCCCccccCCCcc
Q 029437           85 YAKVDAVVYLVDAYDKERFA--ESKKELDALLSDEALANVPFLVLGNKIDIPYAAS--EEE--LRYHLGLSNFTTGKGKV  158 (193)
Q Consensus        85 ~~~~d~vl~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~--~~~--~~~~~~~~~~~~~~~~~  158 (193)
                      +..+|++++|+|++++.++.  ....++..+...  ..+.|+++|+||+|+.....  .+.  ....+....        
T Consensus       106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--------  175 (228)
T 2qu8_A          106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNV--------  175 (228)
T ss_dssp             HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHC--------
T ss_pred             hccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhc--------
Confidence            67889999999999987653  233455544332  24899999999999974322  211  111110000        


Q ss_pred             ccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          159 NLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       159 ~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                            .....+++|||++|.|++++|++|.+.+
T Consensus       176 ------~~~~~~~~~SA~~g~gi~~l~~~l~~~i  203 (228)
T 2qu8_A          176 ------KNPIKFSSFSTLTGVGVEQAKITACELL  203 (228)
T ss_dssp             ------CSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ------CCCceEEEEecccCCCHHHHHHHHHHHH
Confidence                  0126899999999999999999998764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.93  E-value=3.3e-26  Score=159.02  Aligned_cols=150  Identities=21%  Similarity=0.236  Sum_probs=107.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc--cC--CCCCcceeEEEeCCEEEEEEEcCChhhh----Hh--h--HHhhcc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ--HQ--PTQYPTSEELSIGKIKFKAFDLGGHQIA----RR--V--WKDYYA   86 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~--~t~~~~~~~~~~~~~~~~~~D~~G~~~~----~~--~--~~~~~~   86 (193)
                      ...+|+++|++|||||||++++.+..+..  ..  .|.+.....+..++..+.+|||||+...    ..  .  ....+.
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   82 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE   82 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence            45799999999999999999999876432  22  2344455677788888999999997542    11  1  123568


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCc
Q 029437           87 KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVR  166 (193)
Q Consensus        87 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (193)
                      .+|++++|+|++++.++. ...|+..+... ...++|+++|+||+|+.....          ....            ..
T Consensus        83 ~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~----------~~~~------------~~  138 (172)
T 2gj8_A           83 QADRVLFMVDGTTTDAVD-PAEIWPEFIAR-LPAKLPITVVRNKADITGETL----------GMSE------------VN  138 (172)
T ss_dssp             TCSEEEEEEETTTCCCCS-HHHHCHHHHHH-SCTTCCEEEEEECHHHHCCCC----------EEEE------------ET
T ss_pred             hCCEEEEEEECCCCCCHH-HHHHHHHHHHh-cccCCCEEEEEECccCCcchh----------hhhh------------cc
Confidence            999999999999887654 33555555432 235799999999999853210          0100            02


Q ss_pred             ceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          167 PLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       167 ~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ..++++|||++|.|++++|++|.+.+
T Consensus       139 ~~~~~~~SA~~g~gv~~l~~~l~~~~  164 (172)
T 2gj8_A          139 GHALIRLSARTGEGVDVLRNHLKQSM  164 (172)
T ss_dssp             TEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred             CCceEEEeCCCCCCHHHHHHHHHHHh
Confidence            36799999999999999999998765

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.93  E-value=1.1e-25  Score=169.78  Aligned_cols=158  Identities=16%  Similarity=0.197  Sum_probs=116.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC--cc--ccCCCCCcceeEEEe-CCEEEEEEEcCChhhh-----HhhHHhhcccC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER--LV--QHQPTQYPTSEELSI-GKIKFKAFDLGGHQIA-----RRVWKDYYAKV   88 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~--~~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~-----~~~~~~~~~~~   88 (193)
                      ..+||+++|++|||||||++++.+..  +.  ...+|.+.....+.+ ++..+.+|||||++.+     ......+++.+
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a   81 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV   81 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence            35799999999999999999998873  32  355688877777775 6789999999999988     56777888999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHcC-CCCCCCcEEEEEeCCCCCCCCCHH--------HHHHhhCCCccccCCCccc
Q 029437           89 DAVVYLVDAYDKERFAESKKELDALLSD-EALANVPFLVLGNKIDIPYAASEE--------ELRYHLGLSNFTTGKGKVN  159 (193)
Q Consensus        89 d~vl~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~pviiv~nK~D~~~~~~~~--------~~~~~~~~~~~~~~~~~~~  159 (193)
                      |++++|+|++++++++.+..|...+... ...+++|+++++||+|+.......        +..+ +....         
T Consensus        82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~-~~~~~---------  151 (307)
T 3r7w_A           82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSE-TSSEF---------  151 (307)
T ss_dssp             SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHH-HHHTT---------
T ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHH-HHHHc---------
Confidence            9999999999999888876654333211 113589999999999997421121        1111 11010         


Q ss_pred             cCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          160 LADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       160 ~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                          ....+.+++|||++ .|+.++|..+.+.
T Consensus       152 ----g~~~~~~~~tSa~~-~~i~e~~~~iv~~  178 (307)
T 3r7w_A          152 ----GFPNLIGFPTSIWD-ESLYKAWSQIVCS  178 (307)
T ss_dssp             ----TCCSCEEEECCTTS-SHHHHHHHHHHHT
T ss_pred             ----CCCCeEEEEeeecC-ChHHHHHHHHHHH
Confidence                00136899999999 8898888887764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.93  E-value=2.6e-26  Score=161.50  Aligned_cols=157  Identities=17%  Similarity=0.096  Sum_probs=106.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEeCCEEEEEEEcCC-----------hhhhHhhHHhhccc-
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELSIGKIKFKAFDLGG-----------HQIARRVWKDYYAK-   87 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~G-----------~~~~~~~~~~~~~~-   87 (193)
                      ++|+++|++|||||||++++.+..+.. ..|+.........+.  .+.+|||||           ++.+......++.. 
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN   79 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence            589999999999999999999887654 334444444444444  688999999           66777777666665 


Q ss_pred             CCEEEEEEECCChhhHHHHH-HHHHH--------HHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCC
Q 029437           88 VDAVVYLVDAYDKERFAESK-KELDA--------LLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKG  156 (193)
Q Consensus        88 ~d~vl~v~d~~~~~~~~~~~-~~~~~--------~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~  156 (193)
                      ++++++|+++.|..++..+. .|...        +.......+.|+++++||+|+....  ..+++.+.++..+.     
T Consensus        80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-----  154 (190)
T 2cxx_A           80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLS-----  154 (190)
T ss_dssp             GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGG-----
T ss_pred             hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhh-----
Confidence            55555555555555555552 22221        1111122589999999999997543  23335555554330     


Q ss_pred             ccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          157 KVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       157 ~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                              .....+++|||++|.|++++|++|.+.+
T Consensus       155 --------~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  182 (190)
T 2cxx_A          155 --------EIDKVFIPISAKFGDNIERLKNRIFEVI  182 (190)
T ss_dssp             --------GHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             --------ccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence                    0124689999999999999999998764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.93  E-value=8.4e-25  Score=153.60  Aligned_cols=149  Identities=28%  Similarity=0.317  Sum_probs=110.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCEEEEEEEcCChhhhH------hhHHhhcc-
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQIAR------RVWKDYYA-   86 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~~-   86 (193)
                      .++.++|+++|++|||||||++++.+..+. ...+  +.......+.+++..+.+|||||+..+.      .+...++. 
T Consensus         4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            356789999999999999999999987643 2333  3344566677788999999999987653      33444543 


Q ss_pred             -cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC----CCHHHHHHhhCCCccccCCCccccC
Q 029437           87 -KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA----ASEEELRYHLGLSNFTTGKGKVNLA  161 (193)
Q Consensus        87 -~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  161 (193)
                       .+|++++|+|.++.   +....++..+..    .+.|+++++||+|+...    ....++.+.++              
T Consensus        84 ~~~~~~i~v~d~~~~---~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------------  142 (188)
T 2wjg_A           84 EKPDLVVNIVDATAL---ERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------------  142 (188)
T ss_dssp             HCCSEEEEEEEGGGH---HHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------------
T ss_pred             cCCCEEEEEecchhH---HHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhC--------------
Confidence             58999999999764   445556555543    47899999999998621    12333444333              


Q ss_pred             CCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          162 DSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       162 ~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                            ..++++||++|.|++++|++|.+.+
T Consensus       143 ------~~~~~~Sa~~~~~v~~l~~~i~~~~  167 (188)
T 2wjg_A          143 ------VKVVPLSAAKKMGIEELKKAISIAV  167 (188)
T ss_dssp             ------SCEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             ------CCeEEEEecCCCCHHHHHHHHHHHH
Confidence                  3578999999999999999998765

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.93  E-value=1.9e-25  Score=165.93  Aligned_cols=147  Identities=25%  Similarity=0.241  Sum_probs=109.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cC--CCCCcceeEEEeCCEEEEEEEcCChhhhHh----------hHHhhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQ--PTQYPTSEELSIGKIKFKAFDLGGHQIARR----------VWKDYY   85 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~--~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~----------~~~~~~   85 (193)
                      +.++|+++|++|||||||+|++++..+.. ..  .|.......+.+.+..+.+|||||...+..          ....++
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~   81 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI   81 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence            56899999999999999999999887532 22  244555666777788999999999876541          222232


Q ss_pred             --ccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC----CHHHHHHhhCCCccccCCCccc
Q 029437           86 --AKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA----SEEELRYHLGLSNFTTGKGKVN  159 (193)
Q Consensus        86 --~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~  159 (193)
                        ..+|++++|+|+++.++...+..++...       ++|+++++||+|+....    ...++.+.++            
T Consensus        82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~-------~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg------------  142 (274)
T 3i8s_A           82 LSGDADLLINVVDASNLERNLYLTLQLLEL-------GIPCIVALNMLDIAEKQNIRIEIDALSARLG------------  142 (274)
T ss_dssp             HHTCCSEEEEEEEGGGHHHHHHHHHHHHHH-------TCCEEEEEECHHHHHHTTEEECHHHHHHHHT------------
T ss_pred             hhcCCCEEEEEecCCChHHHHHHHHHHHhc-------CCCEEEEEECccchhhhhHHHHHHHHHHhcC------------
Confidence              6899999999999876554444444333       79999999999986321    2334444443            


Q ss_pred             cCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          160 LADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       160 ~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                              ++++++||++|.|+++++++|.+.+
T Consensus       143 --------~~~i~~SA~~g~gi~el~~~i~~~~  167 (274)
T 3i8s_A          143 --------CPVIPLVSTRGRGIEALKLAIDRYK  167 (274)
T ss_dssp             --------SCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred             --------CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence                    3579999999999999999998764

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.93  E-value=2.3e-25  Score=163.86  Aligned_cols=144  Identities=23%  Similarity=0.239  Sum_probs=107.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cC--CCCCcceeEEEeCCEEEEEEEcCChhhhHh----------hHHhhc--
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQ--PTQYPTSEELSIGKIKFKAFDLGGHQIARR----------VWKDYY--   85 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~--~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~----------~~~~~~--   85 (193)
                      .+|+++|++|||||||++++++..+.. ..  .|.......+.+++..+.+|||||...+..          +...++  
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~   81 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID   81 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence            489999999999999999999886432 22  345566777788889999999999876543          444555  


Q ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC----CCHHHHHHhhCCCccccCCCccccC
Q 029437           86 AKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA----ASEEELRYHLGLSNFTTGKGKVNLA  161 (193)
Q Consensus        86 ~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  161 (193)
                      ..+|++++|+|+++.++...+   ...+..    .+.|+++++||+|+...    .....+.+.++              
T Consensus        82 ~~~d~vi~VvDas~~~~~~~l---~~~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg--------------  140 (256)
T 3iby_A           82 LEYDCIINVIDACHLERHLYL---TSQLFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLLG--------------  140 (256)
T ss_dssp             SCCSEEEEEEEGGGHHHHHHH---HHHHTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC--------------
T ss_pred             CCCCEEEEEeeCCCchhHHHH---HHHHHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC--------------
Confidence            789999999999987554333   233322    37999999999998632    12334444443              


Q ss_pred             CCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          162 DSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       162 ~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                            ++++++||++|.|+++++++|.+.
T Consensus       141 ------~~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          141 ------CSVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             ------SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred             ------CCEEEEECCCCCCHHHHHHHHHhh
Confidence                  357999999999999999999764

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.93  E-value=6.1e-25  Score=165.03  Aligned_cols=153  Identities=22%  Similarity=0.191  Sum_probs=110.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccC----CCCCcceeEEEeCCEEEEEEEcCChhh--------hHhhHHhhcc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQ----PTQYPTSEELSIGKIKFKAFDLGGHQI--------ARRVWKDYYA   86 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~   86 (193)
                      +..+|+++|.+|+|||||+|++++..+....    .|..........++..+.+|||||...        +......+++
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~   85 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA   85 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence            4457999999999999999999998875322    233333444556789999999999765        4555667789


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC-HHHHHHhhCCCccccCCCccccCCCCC
Q 029437           87 KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGKGKVNLADSNV  165 (193)
Q Consensus        87 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (193)
                      .+|++++|+|++++.+.  ...++...+... ..+.|+++++||+|+..... ..+....+   .               
T Consensus        86 ~ad~il~VvD~~~~~~~--~~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~---~---------------  144 (301)
T 1wf3_A           86 DVNAVVWVVDLRHPPTP--EDELVARALKPL-VGKVPILLVGNKLDAAKYPEEAMKAYHEL---L---------------  144 (301)
T ss_dssp             SCSEEEEEEETTSCCCH--HHHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHHHHHHHHHT---S---------------
T ss_pred             cCCEEEEEEECCCCCCh--HHHHHHHHHHhh-cCCCCEEEEEECcccCCchHHHHHHHHHh---c---------------
Confidence            99999999999886433  234444443332 24799999999999974322 22222222   1               


Q ss_pred             cceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          166 RPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       166 ~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ...+++++||++|.|+++++++|.+.+
T Consensus       145 ~~~~~~~iSA~~g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          145 PEAEPRMLSALDERQVAELKADLLALM  171 (301)
T ss_dssp             TTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             CcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence            224689999999999999999998754

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.93  E-value=5.5e-25  Score=162.04  Aligned_cols=147  Identities=22%  Similarity=0.277  Sum_probs=109.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCEEEEEEEcCChhhhHh------hHHhhc--c
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQIARR------VWKDYY--A   86 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~--~   86 (193)
                      ++.++|+++|++|||||||++++++..+. ...|  |.......+.+.+..+.+|||||...+..      +...++  .
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~   82 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG   82 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence            45689999999999999999999987754 2223  44555666777789999999999876542      223444  5


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--C--CCHHHHHHhhCCCccccCCCccccCC
Q 029437           87 KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--A--ASEEELRYHLGLSNFTTGKGKVNLAD  162 (193)
Q Consensus        87 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (193)
                      .+|++++|+|+++.++.   ..++..+..    .+.|+++++||+|+..  .  ....++.+.++               
T Consensus        83 ~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg---------------  140 (258)
T 3a1s_A           83 DADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG---------------  140 (258)
T ss_dssp             CCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC---------------
T ss_pred             CCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHcC---------------
Confidence            89999999999987543   235555543    3799999999999862  1  22344544444               


Q ss_pred             CCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          163 SNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       163 ~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                           ++++++||++|.|+++++++|.+.
T Consensus       141 -----~~vi~~SA~~g~gi~el~~~i~~~  164 (258)
T 3a1s_A          141 -----IPVVFTSSVTGEGLEELKEKIVEY  164 (258)
T ss_dssp             -----SCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             -----CCEEEEEeeCCcCHHHHHHHHHHH
Confidence                 356899999999999999999764

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.92  E-value=7.1e-25  Score=166.79  Aligned_cols=172  Identities=18%  Similarity=0.250  Sum_probs=117.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      ....++|+++|++|+|||||++++.+..+.. ..+|.... ...+..++  ..+.+|||||++.+......++..+|+++
T Consensus       152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  231 (332)
T 2wkq_A          152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  231 (332)
T ss_dssp             HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred             ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence            4566899999999999999999999887654 33444332 23334444  45669999999999988888999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437           93 YLVDAYDKERFAESK-KELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      +|+|++++.++..+. .|+..+...  ..++|+++|+||+|+.......+................ .+.+. .....++
T Consensus       232 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~-~~~~~~~  307 (332)
T 2wkq_A          232 ICFSLVSPASFHHVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL-AMAKE-IGAVKYL  307 (332)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--CTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH-HHHHH-TTCSEEE
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhh--CCCCcEEEEEEchhcccccchhhhccccccccccHHHHH-HHHHH-cCCcEEE
Confidence            999999999998887 444444332  238999999999999643221111111111110000000 00000 0123789


Q ss_pred             EeeeecCCChhhHHHhhhhhc
Q 029437          172 MCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       172 ~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +|||++|.|++++|++|.+.+
T Consensus       308 ~~Sa~~~~gi~~l~~~l~~~~  328 (332)
T 2wkq_A          308 ECSALTQRGLKTVFDEAIRAV  328 (332)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHH
T ss_pred             EecCCCCcCHHHHHHHHHHHH
Confidence            999999999999999998754

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.92  E-value=1.1e-24  Score=164.23  Aligned_cols=157  Identities=20%  Similarity=0.207  Sum_probs=113.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeC-CEEEEEEEcCChhh----------hHhhHH
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQP----TQYPTSEELSIG-KIKFKAFDLGGHQI----------ARRVWK   82 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~-~~~~~~~D~~G~~~----------~~~~~~   82 (193)
                      ...-.|+++|.+|||||||+|++.+..+....+    |..........+ +..+.+|||||+..          +.....
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~   87 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK   87 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence            345579999999999999999999988764322    344445556667 89999999999843          335556


Q ss_pred             hhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC-CCCCHHHHHHhhCCCccccCCCccccC
Q 029437           83 DYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP-YAASEEELRYHLGLSNFTTGKGKVNLA  161 (193)
Q Consensus        83 ~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (193)
                      .++..+|++++|+|++++.+......|+..+..    .+.|+++++||+|+. ......+..+.+....           
T Consensus        88 ~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~-----------  152 (308)
T 3iev_A           88 QSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH-----------  152 (308)
T ss_dssp             HHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC-----------
T ss_pred             HHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc-----------
Confidence            677899999999999988766655444444422    479999999999997 3333333322222111           


Q ss_pred             CCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          162 DSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       162 ~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                         .....++++||++|.|+++++++|.+.+
T Consensus       153 ---~~~~~i~~vSA~~g~gv~~L~~~l~~~l  180 (308)
T 3iev_A          153 ---PELTEIVPISALKGANLDELVKTILKYL  180 (308)
T ss_dssp             ---TTCCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             ---cCCCeEEEEeCCCCCCHHHHHHHHHHhC
Confidence               0224689999999999999999998765

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.92  E-value=6.2e-25  Score=177.06  Aligned_cols=168  Identities=18%  Similarity=0.184  Sum_probs=112.9

Q ss_pred             hHHHHHHHHHhh-----CCCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEE--------E----eCCE
Q 029437            3 LLDWFYGVLASL-----GLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEEL--------S----IGKI   64 (193)
Q Consensus         3 ~~~~~~~~~~~~-----~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~--------~----~~~~   64 (193)
                      +.+|++.+....     ......+||+++|.+|||||||++++++..+.. ..+|.+......        .    ....
T Consensus        19 i~~yl~~l~~~~~~g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~   98 (535)
T 3dpu_A           19 VRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKEC   98 (535)
T ss_dssp             HHHHHHHHHHHHHTTCCCBCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTC
T ss_pred             HHHHHHHHHHhhccCcccccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceE
Confidence            567888877621     124678999999999999999999999988754 345665554432        1    2258


Q ss_pred             EEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHH
Q 029437           65 KFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEEL  142 (193)
Q Consensus        65 ~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~  142 (193)
                      .+.+|||||++.+......+++.+|++++|+|+++.+...   .|+..+...  .++.|+++|+||+|+...  ...++.
T Consensus        99 ~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~~~~~---~~~~~l~~~--~~~~pvilV~NK~Dl~~~~~v~~~~~  173 (535)
T 3dpu_A           99 LFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKH---YWLRHIEKY--GGKSPVIVVMNKIDENPSYNIEQKKI  173 (535)
T ss_dssp             EEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGGGGHH---HHHHHHHHH--SSSCCEEEEECCTTTCTTCCCCHHHH
T ss_pred             EEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCchhHH---HHHHHHHHh--CCCCCEEEEEECCCcccccccCHHHH
Confidence            9999999999999888888889999999999998775543   444444322  137999999999999743  233333


Q ss_pred             HHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          143 RYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .+.....                 ..+++++||++|.|+++++++|.+.+
T Consensus       174 ~~~~~~~-----------------~~~~~~vSA~~g~gi~eL~~~l~~~~  206 (535)
T 3dpu_A          174 NERFPAI-----------------ENRFHRISCKNGDGVESIAKSLKSAV  206 (535)
T ss_dssp             HHHCGGG-----------------TTCEEECCC-----CTTHHHHHHHHH
T ss_pred             HHHHHhc-----------------CCceEEEecCcccCHHHHHHHHHHHH
Confidence            3333211                 23589999999999999999998764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.92  E-value=2.6e-24  Score=152.64  Aligned_cols=157  Identities=20%  Similarity=0.285  Sum_probs=117.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCC--cceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQY--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      ...++|+++|++|||||||++++.+..+.. ..||.+  .....+.+.+  +.+.+||++|++.++.....+++.+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            456899999999999999999999987654 334544  3345566655  56789999999988877777888999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      +|+|+.+..++..+..|+..+... ...+.|+++++||+|+..  ....++.......                 ..+.+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~-----------------~~~~~  144 (199)
T 2f9l_A           83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK-----------------NNLSF  144 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCEE
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHHHH-----------------cCCeE
Confidence            999999998888877777655322 235789999999999963  2233332211110                 12467


Q ss_pred             EEeeeecCCChhhHHHhhhhhc
Q 029437          171 FMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       171 ~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++||+++.|+++++++|.+.+
T Consensus       145 ~d~Sal~~~~i~~l~~~l~~~~  166 (199)
T 2f9l_A          145 IETSALDSTNVEEAFKNILTEI  166 (199)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHH
Confidence            8899999999999999998754

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.92  E-value=1.4e-25  Score=168.34  Aligned_cols=159  Identities=18%  Similarity=0.289  Sum_probs=111.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccc----cCCCCCcceeEEEeCCEEEEEEEcCChhhhHh---hHHhhcccCCEEEEE
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQ----HQPTQYPTSEELSIGKIKFKAFDLGGHQIARR---VWKDYYAKVDAVVYL   94 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~~~~~~~~~d~vl~v   94 (193)
                      ||+++|++|+|||||++++.+..+..    ..||.+.....+. ..+++++|||+|+++++.   ....++++++++++|
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV   79 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV   79 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence            68999999999999999887664433    4577777766553 458999999999999864   467889999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcC--CCCCCCcEEEEEeCCCCCCCCCH----HHHHHhhCCCccccCCCccccCCCCCcce
Q 029437           95 VDAYDKERFAESKKELDALLSD--EALANVPFLVLGNKIDIPYAASE----EELRYHLGLSNFTTGKGKVNLADSNVRPL  168 (193)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~--~~~~~~pviiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (193)
                      +|++++  +.+...+|..++..  ...+++|+++++||+|+......    .++....+..+....     .   ....+
T Consensus        80 ~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~-----~---~~~~i  149 (331)
T 3r7w_B           80 IDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELG-----L---DGVQV  149 (331)
T ss_dssp             CCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSS-----C---SCCCE
T ss_pred             EECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhc-----c---cccCc
Confidence            999987  33334444433321  12368999999999999743222    123332222221100     0   01357


Q ss_pred             EEEEeeeecCCChhhHHHhhhhhc
Q 029437          169 EVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       169 ~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .+++|||++ .+|.++|..|.+.+
T Consensus       150 ~f~eTSAkd-~nV~eAFs~iv~~l  172 (331)
T 3r7w_B          150 SFYLTSIFD-HSIYEAFSRIVQKL  172 (331)
T ss_dssp             EEECCCSSS-SHHHHHHHHHHTTS
T ss_pred             eEEEeccCC-CcHHHHHHHHHHHH
Confidence            899999998 58999999988764

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.92  E-value=5.8e-25  Score=158.50  Aligned_cols=160  Identities=18%  Similarity=0.216  Sum_probs=105.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCc-cccCC----CCCcceeEEE-eCCEEEEEEEcCC----------hhhhHhhH
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQP----TQYPTSEELS-IGKIKFKAFDLGG----------HQIARRVW   81 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~----t~~~~~~~~~-~~~~~~~~~D~~G----------~~~~~~~~   81 (193)
                      ...++|+|+|++|+|||||++++.+... ....+    |.......+. ..+..+.+|||||          .+.+....
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  106 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL  106 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence            3568999999999999999999998873 22222    2232333333 3457899999999          34455555


Q ss_pred             Hhhccc---CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH----HHHhhCCCccccC
Q 029437           82 KDYYAK---VDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE----LRYHLGLSNFTTG  154 (193)
Q Consensus        82 ~~~~~~---~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~----~~~~~~~~~~~~~  154 (193)
                      ..++..   +|++++|+|++++.+  .....+...+..   .+.|+++|+||+|+.......+    +.+.+....   .
T Consensus       107 ~~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~---~  178 (223)
T 4dhe_A          107 SSYLQTRPQLCGMILMMDARRPLT--ELDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR---D  178 (223)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHhcCcCcCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh---h
Confidence            555554   788999999987533  222222333322   5789999999999975332222    122221100   0


Q ss_pred             CCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          155 KGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .       ......+++++||++|.|+++++++|.+.+
T Consensus       179 ~-------~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~  209 (223)
T 4dhe_A          179 A-------GYAGKLTVQLFSALKRTGLDDAHALIESWL  209 (223)
T ss_dssp             H-------TCCSCEEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             c-------ccCCCCeEEEeecCCCcCHHHHHHHHHHhc
Confidence            0       001347899999999999999999998765

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.92  E-value=9.4e-25  Score=161.74  Aligned_cols=145  Identities=26%  Similarity=0.355  Sum_probs=105.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC-ccccCC--CCCcceeEEEeCCEEEEEEEcCChhhhH------hhHHhhcc--cC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER-LVQHQP--TQYPTSEELSIGKIKFKAFDLGGHQIAR------RVWKDYYA--KV   88 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~~--~~   88 (193)
                      .++|+++|++|||||||++++++.. +....|  |.......+.+ +..+.+|||||+..+.      .+...++.  .+
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~   81 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRA   81 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCC
Confidence            4789999999999999999999875 233333  33444444444 6789999999987764      34444554  69


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC----CCHHHHHHhhCCCccccCCCccccCCCC
Q 029437           89 DAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA----ASEEELRYHLGLSNFTTGKGKVNLADSN  164 (193)
Q Consensus        89 d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (193)
                      |++++|+|+++.++.   ..+...+..    .+.|+++++||+|+...    ....++.+.++                 
T Consensus        82 d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg-----------------  137 (272)
T 3b1v_A           82 DSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG-----------------  137 (272)
T ss_dssp             SEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT-----------------
T ss_pred             CEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC-----------------
Confidence            999999999887543   334444433    48999999999998621    23334444443                 


Q ss_pred             CcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          165 VRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                         ++++++||++|.|++++|++|.+.+
T Consensus       138 ---~~vi~~SA~~g~gi~el~~~i~~~~  162 (272)
T 3b1v_A          138 ---VPVVATSALKQTGVDQVVKKAAHTT  162 (272)
T ss_dssp             ---SCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred             ---CCEEEEEccCCCCHHHHHHHHHHHH
Confidence               3579999999999999999998754

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.92  E-value=1.3e-25  Score=165.34  Aligned_cols=160  Identities=19%  Similarity=0.142  Sum_probs=106.6

Q ss_pred             CCCccEEEEEcCC---------CCCHHHHHHHHhcC---Cccc-cCCCC-C--cceeE----------------EEeCCE
Q 029437           17 WQKEAKILFLGLD---------NAGKTTLLHMLKDE---RLVQ-HQPTQ-Y--PTSEE----------------LSIGKI   64 (193)
Q Consensus        17 ~~~~~~i~v~G~~---------~~GKssl~~~l~~~---~~~~-~~~t~-~--~~~~~----------------~~~~~~   64 (193)
                      .+..+||+++|.+         |||||||++++.+.   .+.. ..+|. +  .....                +....+
T Consensus        16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   95 (255)
T 3c5h_A           16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC   95 (255)
T ss_dssp             CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred             CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence            5677999999999         99999999999984   4432 22322 1  11111                233457


Q ss_pred             EEEEEE-----------------------cCChhhhHhhHHhhcc---------------------cCCEEEEEEECCCh
Q 029437           65 KFKAFD-----------------------LGGHQIARRVWKDYYA---------------------KVDAVVYLVDAYDK  100 (193)
Q Consensus        65 ~~~~~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~vl~v~d~~~~  100 (193)
                      .+.+||                       ++|++++..++..++.                     ++|++++|+|++++
T Consensus        96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~  175 (255)
T 3c5h_A           96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG  175 (255)
T ss_dssp             CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred             EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence            899999                       4455545444455554                     69999999999998


Q ss_pred             --hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecC
Q 029437          101 --ERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK  178 (193)
Q Consensus       101 --~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  178 (193)
                        .+++.+..|+..+.......++|+++|+||+|+......++...... ..               ..+.+++|||++|
T Consensus       176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~-~~---------------~~~~~~e~SAk~g  239 (255)
T 3c5h_A          176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFAL-SK---------------KNLQVVETSARSN  239 (255)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHH-TS---------------SSCCEEECBTTTT
T ss_pred             chhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHH-hc---------------CCCeEEEEECCCC
Confidence              89999988888775432335899999999999963211122111110 00               1246899999999


Q ss_pred             CChhhHHHhhhhhc
Q 029437          179 MGYGDGFKWLSQYI  192 (193)
Q Consensus       179 ~gv~el~~~i~~~~  192 (193)
                      .|++++|++|.+.+
T Consensus       240 ~gv~elf~~l~~~l  253 (255)
T 3c5h_A          240 VNVDLAFSTLVQLI  253 (255)
T ss_dssp             BSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998765

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.91  E-value=4.9e-24  Score=158.18  Aligned_cols=148  Identities=18%  Similarity=0.188  Sum_probs=109.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCC--CCCcceeEEEeCCEEEEEEEcCChhhhHh------hHHhhc--cc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQP--TQYPTSEELSIGKIKFKAFDLGGHQIARR------VWKDYY--AK   87 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~--~~   87 (193)
                      +.++|+++|++|||||||++++++..+.. ..+  |.......+.+.+..+.+|||||...+..      ....++  ..
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~   81 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN   81 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence            45799999999999999999999887632 223  44455667778888999999999876543      344444  68


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC----CCCHHHHHHhhCCCccccCCCccccCCC
Q 029437           88 VDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY----AASEEELRYHLGLSNFTTGKGKVNLADS  163 (193)
Q Consensus        88 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (193)
                      +|++++|+|+++.+   ....++..+...   ...|+++++||+|+..    .....++.+.++                
T Consensus        82 ~d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg----------------  139 (271)
T 3k53_A           82 ADVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG----------------  139 (271)
T ss_dssp             CSEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS----------------
T ss_pred             CcEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcC----------------
Confidence            99999999998864   233444455433   2399999999999751    223444555554                


Q ss_pred             CCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          164 NVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                          ++++++||++|.|+++++++|.+.+
T Consensus       140 ----~~~~~~Sa~~g~gi~~l~~~i~~~~  164 (271)
T 3k53_A          140 ----VPVIPTNAKKGEGVEELKRMIALMA  164 (271)
T ss_dssp             ----SCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred             ----CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence                3468999999999999999997653

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.91  E-value=2.9e-24  Score=169.16  Aligned_cols=157  Identities=13%  Similarity=0.100  Sum_probs=111.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc--cC--CCCCcceeEEEeCCEEEEEEEcCCh----------hhhHhhHH-h
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ--HQ--PTQYPTSEELSIGKIKFKAFDLGGH----------QIARRVWK-D   83 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~--~t~~~~~~~~~~~~~~~~~~D~~G~----------~~~~~~~~-~   83 (193)
                      ..++|+++|.+|+|||||++++++.++..  ..  .|.+.....+.+++..+.+|||||+          +.+..... .
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~  253 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK  253 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence            45899999999999999999999887642  22  2455556677788889999999998          45554433 4


Q ss_pred             hcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC--HHHHHHhhCCCccccCCCccccC
Q 029437           84 YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS--EEELRYHLGLSNFTTGKGKVNLA  161 (193)
Q Consensus        84 ~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  161 (193)
                      ++..+|++++|+|++++.+.+.. .++..+..    .+.|+++++||+|+.....  .++..+.+.....          
T Consensus       254 ~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~----------  318 (436)
T 2hjg_A          254 AIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQ----------  318 (436)
T ss_dssp             HHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCG----------
T ss_pred             HHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcc----------
Confidence            67889999999999998776554 44444432    4799999999999975433  2333333221110          


Q ss_pred             CCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          162 DSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       162 ~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                        .....+++++||++|.|++++|+.|.+.+
T Consensus       319 --~~~~~~~~~~SA~tg~~v~~l~~~i~~~~  347 (436)
T 2hjg_A          319 --FLDYAPILFMSALTKKRIHTLMPAIIKAS  347 (436)
T ss_dssp             --GGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred             --cCCCCCEEEEecccCCCHHHHHHHHHHHH
Confidence              00235789999999999999999887653

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.91  E-value=4.3e-24  Score=169.07  Aligned_cols=153  Identities=22%  Similarity=0.215  Sum_probs=96.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc--ccC--CCCCcceeEEEeCCEEEEEEEcCChhhhHhhH--------Hhh
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV--QHQ--PTQYPTSEELSIGKIKFKAFDLGGHQIARRVW--------KDY   84 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--------~~~   84 (193)
                      ....++|+++|++|+|||||+|++.+.+..  ...  .|.+.....+..++..+.+|||||...+....        ..+
T Consensus       230 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          230 VSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CC
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            346789999999999999999999988633  222  25566667788899999999999987755432        335


Q ss_pred             cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH--HHHhhCCCccccCCCccccCC
Q 029437           85 YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE--LRYHLGLSNFTTGKGKVNLAD  162 (193)
Q Consensus        85 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  162 (193)
                      +..+|++++|+|++++.++.+... +..++...  .++|+++|+||+|+......+.  +.+.                 
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~-~~~~l~~l--~~~piIvV~NK~Dl~~~~~~~~~~l~~~-----------------  369 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTE-IRELKAAH--PAAKFLTVANKLDRAANADALIRAIADG-----------------  369 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHH-HHHHHHHC--TTSEEEEEEECTTSCTTTHHHHHHHHHH-----------------
T ss_pred             cccCCEEEEEEECCCCcchhhhHH-HHHHHHhc--CCCCEEEEEECcCCCCccchhHHHHHhc-----------------
Confidence            789999999999998876543222 12222222  2799999999999975433221  1111                 


Q ss_pred             CCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          163 SNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       163 ~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                         ...+++++||++|.|+++++++|.+.+
T Consensus       370 ---~~~~~i~vSAktg~GI~eL~~~i~~~~  396 (476)
T 3gee_A          370 ---TGTEVIGISALNGDGIDTLKQHMGDLV  396 (476)
T ss_dssp             ---HTSCEEECBTTTTBSHHHHHHHHTHHH
T ss_pred             ---CCCceEEEEECCCCCHHHHHHHHHHHH
Confidence               013579999999999999999998764

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.91  E-value=9e-24  Score=167.33  Aligned_cols=149  Identities=26%  Similarity=0.314  Sum_probs=112.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc--ccC--CCCCcceeEEEeCCEEEEEEEcCChh-hhH--------hhHHhhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLV--QHQ--PTQYPTSEELSIGKIKFKAFDLGGHQ-IAR--------RVWKDYY   85 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~~~D~~G~~-~~~--------~~~~~~~   85 (193)
                      ..++|+++|.||+|||||+|++.+.++.  ...  .|.+.....+.+++..+.+|||||.. ...        .....++
T Consensus       242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~  321 (482)
T 1xzp_A          242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI  321 (482)
T ss_dssp             HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence            4589999999999999999999987643  222  36667778888899999999999987 432        1234567


Q ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCC
Q 029437           86 AKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNV  165 (193)
Q Consensus        86 ~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (193)
                      ..+|++|+|+|++++.+++.. +.+.. +     .+.|+++|+||+|+......+++.+...                  
T Consensus       322 ~~aD~vl~VvD~s~~~s~~~~-~il~~-l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------------------  376 (482)
T 1xzp_A          322 EKADIVLFVLDASSPLDEEDR-KILER-I-----KNKRYLVVINKVDVVEKINEEEIKNKLG------------------  376 (482)
T ss_dssp             HHCSEEEEEEETTSCCCHHHH-HHHHH-H-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------------------
T ss_pred             hcccEEEEEecCCCCCCHHHH-HHHHH-h-----cCCCEEEEEECcccccccCHHHHHHHhc------------------
Confidence            899999999999888665442 33322 2     3789999999999976545455444322                  


Q ss_pred             cceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          166 RPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       166 ~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ...+++++||++|.|+++++++|.+.+
T Consensus       377 ~~~~~i~iSAktg~Gi~eL~~~l~~~~  403 (482)
T 1xzp_A          377 TDRHMVKISALKGEGLEKLEESIYRET  403 (482)
T ss_dssp             CSTTEEEEEGGGTCCHHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            113579999999999999999998753

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.90  E-value=8.1e-24  Score=161.64  Aligned_cols=135  Identities=19%  Similarity=0.297  Sum_probs=102.5

Q ss_pred             CCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCC----------hhhHHHHHHHHHHHHcCCCCC
Q 029437           51 TQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYD----------KERFAESKKELDALLSDEALA  120 (193)
Q Consensus        51 t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~  120 (193)
                      |.+.....+.++++.+.+|||+|+++++..+..++++++++|+|+|+++          .+++.+...++..+.+.....
T Consensus       180 T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~  259 (353)
T 1cip_A          180 TTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFT  259 (353)
T ss_dssp             CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred             eeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcccc
Confidence            4455556677788999999999999999999999999999999999998          567999999999998766667


Q ss_pred             CCcEEEEEeCCCCCC-----------------CCCHHHHHHhhCCCccccCCCccccCC-CCCcceEEEEeeeecCCChh
Q 029437          121 NVPFLVLGNKIDIPY-----------------AASEEELRYHLGLSNFTTGKGKVNLAD-SNVRPLEVFMCSIVRKMGYG  182 (193)
Q Consensus       121 ~~pviiv~nK~D~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~g~gv~  182 (193)
                      ++|+++++||+|+..                 ..+.++..+.....+..       +.. .....+.+++|||++|.||+
T Consensus       260 ~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~-------l~~~~~~~~~~~~etSA~~~~nV~  332 (353)
T 1cip_A          260 DTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFED-------LNKRKDTKEIYTHFTCATDTKNVQ  332 (353)
T ss_dssp             TSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHT-------TCSCTTTCCEEEEECCTTCHHHHH
T ss_pred             CCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHH-------hhcccCCCceEEEEEECcCchhHH
Confidence            899999999999851                 12333332222211100       000 01145789999999999999


Q ss_pred             hHHHhhhhhc
Q 029437          183 DGFKWLSQYI  192 (193)
Q Consensus       183 el~~~i~~~~  192 (193)
                      ++|+++.+.+
T Consensus       333 ~vF~~v~~~i  342 (353)
T 1cip_A          333 FVFDAVTDVI  342 (353)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998754

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.90  E-value=5.9e-23  Score=144.83  Aligned_cols=157  Identities=19%  Similarity=0.261  Sum_probs=117.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      ...++|+++|++|||||||++++.+..+.. ..+|.+.  ....+.+.+  +.+.+||++|..++......+++.+++++
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i  106 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL  106 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence            456899999999999999999999988653 4455543  345566665  45667999999888877777888899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      +|+|..+..+++++..|+..+... ...+.|+++++||+|+..  ....++.......                 ..+.+
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~-----------------~~~~~  168 (191)
T 1oix_A          107 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK-----------------NGLSF  168 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEE
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHH-----------------cCCEE
Confidence            999999998888777776655321 234789999999999963  2222222111110                 12467


Q ss_pred             EEeeeecCCChhhHHHhhhhhc
Q 029437          171 FMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       171 ~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++||+++.|+++++++|.+.+
T Consensus       169 ld~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          169 IETSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHh
Confidence            8899999999999999998765

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.90  E-value=5.5e-23  Score=158.08  Aligned_cols=156  Identities=17%  Similarity=0.220  Sum_probs=112.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCCEEEEEEEcCChhhh---------HhhHHhhc
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGKIKFKAFDLGGHQIA---------RRVWKDYY   85 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~---------~~~~~~~~   85 (193)
                      ...++|+++|++|||||||++++.+..+..   ...|.......+...+..+.+|||||....         ........
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~  244 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR  244 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence            466899999999999999999999877432   223555566666777889999999997432         12222344


Q ss_pred             ccCCEEEEEEECCChh--hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCC
Q 029437           86 AKVDAVVYLVDAYDKE--RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADS  163 (193)
Q Consensus        86 ~~~d~vl~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (193)
                      ..+|++++|+|++++.  ++.....++..+.....  +.|+++|+||+|+......++......  .             
T Consensus       245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~~~~~~~~~~~~~~--~-------------  307 (357)
T 2e87_A          245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVADEENIKRLEKFVK--E-------------  307 (357)
T ss_dssp             GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTCCHHHHHHHHHHHH--H-------------
T ss_pred             hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccCChHHHHHHHHHHH--h-------------
Confidence            5789999999998876  56666677776654322  799999999999974322222222111  0             


Q ss_pred             CCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          164 NVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       164 ~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                        ...+++++||++|.|+++++++|.+.+
T Consensus       308 --~~~~~~~iSA~~g~gi~~l~~~i~~~l  334 (357)
T 2e87_A          308 --KGLNPIKISALKGTGIDLVKEEIIKTL  334 (357)
T ss_dssp             --TTCCCEECBTTTTBTHHHHHHHHHHHH
T ss_pred             --cCCCeEEEeCCCCcCHHHHHHHHHHHH
Confidence              124578999999999999999998764

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.90  E-value=1.1e-23  Score=151.30  Aligned_cols=123  Identities=24%  Similarity=0.330  Sum_probs=94.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhccc----CCEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK----VDAVV   92 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~----~d~vl   92 (193)
                      ....++|+++|++|+|||||++++.+..+....++..+... ..+....+.+|||||++.++..+..++..    +|+++
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i   87 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI   87 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEE-TTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEE
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEE-EEeeCceEEEEECCCcHHHHHHHHHHHHhccccCCEEE
Confidence            45678999999999999999999998876543222222211 12255789999999999998877777766    89999


Q ss_pred             EEEECC-ChhhHHHHHHHHHHHHcCC---CCCCCcEEEEEeCCCCCCCCCHH
Q 029437           93 YLVDAY-DKERFAESKKELDALLSDE---ALANVPFLVLGNKIDIPYAASEE  140 (193)
Q Consensus        93 ~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~pviiv~nK~D~~~~~~~~  140 (193)
                      +|+|++ +++++.....++..++...   ...++|+++++||+|+......+
T Consensus        88 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~  139 (218)
T 1nrj_B           88 FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS  139 (218)
T ss_dssp             EEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred             EEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH
Confidence            999999 8888888888888876532   23589999999999998665533

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.90  E-value=1.2e-23  Score=160.09  Aligned_cols=154  Identities=21%  Similarity=0.267  Sum_probs=111.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCC-EEEEEEEcCChhh----hHhhHHh---hcccCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGK-IKFKAFDLGGHQI----ARRVWKD---YYAKVD   89 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~----~~~~~~~---~~~~~d   89 (193)
                      .+|+++|.+|||||||++++++.....   ..+|..++...+.+.+ ..+.+|||||...    +..+...   .+..+|
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d  238 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR  238 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence            368999999999999999998876431   2346677777777775 7999999999643    1222222   345699


Q ss_pred             EEEEEEECCC---hhhHHHHHHHHHHHHcCC-CCCCCcEEEEEeCCCCCCCCC-HHHHHHhhCCCccccCCCccccCCCC
Q 029437           90 AVVYLVDAYD---KERFAESKKELDALLSDE-ALANVPFLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGKGKVNLADSN  164 (193)
Q Consensus        90 ~vl~v~d~~~---~~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (193)
                      ++++|+|+++   +++++....++.++.... ...++|+++|+||+|+..... .+++.+.+..                
T Consensus       239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~----------------  302 (342)
T 1lnz_A          239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD----------------  302 (342)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS----------------
T ss_pred             EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc----------------
Confidence            9999999988   677877777777765432 235899999999999974211 1122222221                


Q ss_pred             CcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          165 VRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                        ..+++++||+++.|+++++++|.+.+
T Consensus       303 --~~~v~~iSA~tg~gi~eL~~~l~~~l  328 (342)
T 1lnz_A          303 --DYPVFPISAVTREGLRELLFEVANQL  328 (342)
T ss_dssp             --CCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred             --CCCEEEEECCCCcCHHHHHHHHHHHH
Confidence              13578999999999999999998765

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.90  E-value=3.7e-23  Score=161.36  Aligned_cols=164  Identities=16%  Similarity=0.156  Sum_probs=111.3

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCccccC----CC--------------CCc-----ceeEEEeCCEEEEEEEcC
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ----PT--------------QYP-----TSEELSIGKIKFKAFDLG   72 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~t--------------~~~-----~~~~~~~~~~~~~~~D~~   72 (193)
                      ..+..++|+++|++|+|||||++++++.......    .+              ...     ...........+.+||||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            3567899999999999999999999875322100    00              000     000011223789999999


Q ss_pred             ChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccc
Q 029437           73 GHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFT  152 (193)
Q Consensus        73 G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~  152 (193)
                      |++.+...+...+..+|++++|+|++++.++.+..+++......   ...|+++++||+|+.......+..+++....  
T Consensus        84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l--  158 (403)
T 3sjy_A           84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFT--  158 (403)
T ss_dssp             CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHH--
T ss_pred             CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHH--
Confidence            99999998888999999999999999876555565555544221   2358999999999974332222222221100  


Q ss_pred             cCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          153 TGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                              .......++++++||++|.|+++++++|.+.+
T Consensus       159 --------~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l  190 (403)
T 3sjy_A          159 --------KGTWAENVPIIPVSALHKINIDSLIEGIEEYI  190 (403)
T ss_dssp             --------TTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             --------HhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence                    00011346799999999999999999998754

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.90  E-value=3.5e-23  Score=164.51  Aligned_cols=162  Identities=16%  Similarity=0.100  Sum_probs=111.7

Q ss_pred             hCCCCCccEEEEEcCCCCCHHHHHHHHhcCC----c---cc---cCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHh
Q 029437           14 LGLWQKEAKILFLGLDNAGKTTLLHMLKDER----L---VQ---HQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKD   83 (193)
Q Consensus        14 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~----~---~~---~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~   83 (193)
                      ....+++++|+++|++++|||||+++|.+..    .   ..   ...|.+.....+.+++..+.+|||||++.+...+..
T Consensus        13 ~~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~   92 (482)
T 1wb1_A           13 PHMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVS   92 (482)
T ss_dssp             CCCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHH
T ss_pred             hhhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHH
Confidence            3345678999999999999999999998766    1   11   223556666677778899999999999999888888


Q ss_pred             hcccCCEEEEEEECCC---hhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCcccc
Q 029437           84 YYAKVDAVVYLVDAYD---KERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNL  160 (193)
Q Consensus        84 ~~~~~d~vl~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (193)
                      .+..+|++++|+|+++   +++.+.+    ... ..   .++|+++++||+|+.+....++..+++...... ..     
T Consensus        93 ~~~~aD~~ilVvda~~g~~~qt~e~l----~~~-~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~-~~-----  158 (482)
T 1wb1_A           93 AADIIDLALIVVDAKEGPKTQTGEHM----LIL-DH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQS-TH-----  158 (482)
T ss_dssp             HTTSCCEEEEEEETTTCSCHHHHHHH----HHH-HH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHH-SS-----
T ss_pred             HHhhCCEEEEEEecCCCccHHHHHHH----HHH-HH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhh-hc-----
Confidence            8899999999999987   3333322    222 11   378899999999997532222222222111100 00     


Q ss_pred             CCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          161 ADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       161 ~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                         .....+++++||++|.|+++++++|.+.+
T Consensus       159 ---~~~~~~ii~vSA~~g~gI~~L~~~L~~~i  187 (482)
T 1wb1_A          159 ---NLKNSSIIPISAKTGFGVDELKNLIITTL  187 (482)
T ss_dssp             ---SGGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ---ccccceEEEEECcCCCCHHHHHHHHHHhh
Confidence               01246789999999999999999998753

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.89  E-value=5.6e-23  Score=154.99  Aligned_cols=136  Identities=18%  Similarity=0.257  Sum_probs=102.1

Q ss_pred             CCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECC----------ChhhHHHHHHHHHHHHcCCCC
Q 029437           50 PTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAY----------DKERFAESKKELDALLSDEAL  119 (193)
Q Consensus        50 ~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~----------~~~~~~~~~~~~~~~~~~~~~  119 (193)
                      ||.|.....+..+++.+++|||+|+++++..+..++++++++|+|+|++          +.+++.+...++..+.+....
T Consensus       153 ~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~  232 (327)
T 3ohm_A          153 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF  232 (327)
T ss_dssp             CCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred             ceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence            4556666778888999999999999999999999999999999999654          678899999999999887677


Q ss_pred             CCCcEEEEEeCCCCCC------------------CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCCh
Q 029437          120 ANVPFLVLGNKIDIPY------------------AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGY  181 (193)
Q Consensus       120 ~~~pviiv~nK~D~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv  181 (193)
                      .++|+++++||+|+..                  ..+.++..+.+...+..       +.......+.+++|||+++.||
T Consensus       233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~-------~~~~~~~~i~~~~TsA~d~~nV  305 (327)
T 3ohm_A          233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVD-------LNPDSDKIIYSHFTCATDTENI  305 (327)
T ss_dssp             TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHS-------SCTTTTSCEEEEECCTTCHHHH
T ss_pred             CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHh-------hcccccCCcEEEEEEeecCHHH
Confidence            8999999999999862                  12222222111111100       0011124567889999999999


Q ss_pred             hhHHHhhhhhc
Q 029437          182 GDGFKWLSQYI  192 (193)
Q Consensus       182 ~el~~~i~~~~  192 (193)
                      +++|+.+.+.+
T Consensus       306 ~~vF~~v~~~I  316 (327)
T 3ohm_A          306 RFVFAAVKDTI  316 (327)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999987654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.89  E-value=9.5e-24  Score=166.24  Aligned_cols=149  Identities=18%  Similarity=0.262  Sum_probs=100.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCEEEEEEEcCChh--------hhHhhHHhhccc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQ--------IARRVWKDYYAK   87 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G~~--------~~~~~~~~~~~~   87 (193)
                      ..+|+++|.+|+|||||+|++.+..+....+    |.+.....+.+.+..+.+|||||..        .+......++..
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   82 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE   82 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            3689999999999999999999877653333    3344555666777899999999985        566677778899


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437           88 VDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRP  167 (193)
Q Consensus        88 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (193)
                      +|++++|+|+.++.+..  ..++..++..   .++|+++++||+|+....  .+.     ..+..            ...
T Consensus        83 ad~il~vvD~~~~~~~~--d~~~~~~l~~---~~~pvilv~NK~D~~~~~--~~~-----~~~~~------------lg~  138 (436)
T 2hjg_A           83 ADVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANI-----YDFYS------------LGF  138 (436)
T ss_dssp             CSEEEEEEETTTCSCHH--HHHHHHHHTT---CCSCEEEEEECCCC-------CC-----CSSGG------------GSS
T ss_pred             CCEEEEEEeCCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccCccch--hhH-----HHHHH------------cCC
Confidence            99999999998865532  3445555443   588999999999986421  000     01100            011


Q ss_pred             eEEEEeeeecCCChhhHHHhhhhhc
Q 029437          168 LEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       168 ~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ..++++||++|.|+++++++|.+.+
T Consensus       139 ~~~~~iSA~~g~gv~~L~~~i~~~l  163 (436)
T 2hjg_A          139 GEPYPISGTHGLGLGDLLDAVAEHF  163 (436)
T ss_dssp             CCCEECBTTTTBTHHHHHHHHHHTG
T ss_pred             CCeEEEeCcCCCChHHHHHHHHHhc
Confidence            2568999999999999999998765

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.89  E-value=3.3e-23  Score=163.28  Aligned_cols=149  Identities=20%  Similarity=0.225  Sum_probs=101.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc--ccC--CCCCcceeEEEeCCEEEEEEEcCChhh---------hHhhHHhhccc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLV--QHQ--PTQYPTSEELSIGKIKFKAFDLGGHQI---------ARRVWKDYYAK   87 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~~~D~~G~~~---------~~~~~~~~~~~   87 (193)
                      .+|+++|.||+|||||+|++++....  ...  .|.+.....+.+.+..+.+|||||...         ++.....++..
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~   81 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   81 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence            47999999999999999999988743  222  355667778888999999999999653         34556677899


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHH-HHhhCCCccccCCCccccCCCCCc
Q 029437           88 VDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEEL-RYHLGLSNFTTGKGKVNLADSNVR  166 (193)
Q Consensus        88 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  166 (193)
                      +|++++|+|+.++.+.  ...++..++..   .++|+++++||+|+.... ..+. .+....                 .
T Consensus        82 ad~il~V~D~~~~~~~--~d~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~~l-----------------g  138 (439)
T 1mky_A           82 ADLVLFVVDGKRGITK--EDESLADFLRK---STVDTILVANKAENLREF-EREVKPELYSL-----------------G  138 (439)
T ss_dssp             CSEEEEEEETTTCCCH--HHHHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHGGG-----------------S
T ss_pred             CCEEEEEEECCCCCCH--HHHHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHHhc-----------------C
Confidence            9999999999875432  22233333322   378999999999985210 1111 111111                 1


Q ss_pred             ceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          167 PLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       167 ~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ..+++++||++|.|+++++++|.+.+
T Consensus       139 ~~~~~~iSA~~g~gv~~L~~~i~~~l  164 (439)
T 1mky_A          139 FGEPIPVSAEHNINLDTMLETIIKKL  164 (439)
T ss_dssp             SCSCEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCCEEEEeccCCCCHHHHHHHHHHhc
Confidence            11368999999999999999997654

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.89  E-value=5.7e-23  Score=157.44  Aligned_cols=133  Identities=19%  Similarity=0.329  Sum_probs=92.7

Q ss_pred             CcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCC----------hhhHHHHHHHHHHHHcCCCCCCC
Q 029437           53 YPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYD----------KERFAESKKELDALLSDEALANV  122 (193)
Q Consensus        53 ~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~  122 (193)
                      +.....+.++++.+.+|||+|++.++..+..++.+++++|+|+|+++          .+++.+...++..+.+.....++
T Consensus       190 Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~  269 (362)
T 1zcb_A          190 GIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNV  269 (362)
T ss_dssp             SEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTS
T ss_pred             ceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCC
Confidence            44445566778999999999999999999999999999999999998          77899999999999876666789


Q ss_pred             cEEEEEeCCCCCC-----------------C-CCHHHHHHhhCCCccccCCCccccCCCC-CcceEEEEeeeecCCChhh
Q 029437          123 PFLVLGNKIDIPY-----------------A-ASEEELRYHLGLSNFTTGKGKVNLADSN-VRPLEVFMCSIVRKMGYGD  183 (193)
Q Consensus       123 pviiv~nK~D~~~-----------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~gv~e  183 (193)
                      |+|+++||+|+..                 . .+.++..+.....+.       .+.+.. ...+.+++|||++|.||++
T Consensus       270 piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~-------~l~~~~~~~~~~~~~tSA~d~~nV~~  342 (362)
T 1zcb_A          270 SIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFR-------GKRRDQQQRPLYHHFTTAINTENIRL  342 (362)
T ss_dssp             EEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHH-------TTCSSCC--CCEEEECCTTCHHHHHH
T ss_pred             CEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHH-------HhhcccCCCceEEEEEecCCchhHHH
Confidence            9999999999851                 1 233332222100000       000100 1346789999999999999


Q ss_pred             HHHhhhhhc
Q 029437          184 GFKWLSQYI  192 (193)
Q Consensus       184 l~~~i~~~~  192 (193)
                      +|+++.+.+
T Consensus       343 vF~~v~~~i  351 (362)
T 1zcb_A          343 VFRDVKDTI  351 (362)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.89  E-value=2.5e-23  Score=164.68  Aligned_cols=158  Identities=13%  Similarity=0.132  Sum_probs=111.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc--ccC--CCCCcceeEEEeCCEEEEEEEcCC----------hhhhHhhHH-
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLV--QHQ--PTQYPTSEELSIGKIKFKAFDLGG----------HQIARRVWK-   82 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~~~D~~G----------~~~~~~~~~-   82 (193)
                      ...++|+++|.+|+|||||++++.+.+..  ...  .|.+.....+..++..+.+|||||          ++.+..... 
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~  272 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL  272 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence            45689999999999999999999977632  222  245556677888888999999999          566666544 


Q ss_pred             hhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCcccc
Q 029437           83 DYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNL  160 (193)
Q Consensus        83 ~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  160 (193)
                      .++..+|++++|+|+++... .....++..+..    .+.|+++|+||+|+....  ..++..+......          
T Consensus       273 ~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~----------  337 (456)
T 4dcu_A          273 KAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHF----------  337 (456)
T ss_dssp             HHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHC----------
T ss_pred             HHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhc----------
Confidence            36789999999999987533 222333333322    479999999999997432  2334333332111          


Q ss_pred             CCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          161 ADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       161 ~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                        ......+++++||++|.|++++|++|.+.+
T Consensus       338 --~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~  367 (456)
T 4dcu_A          338 --QFLDYAPILFMSALTKKRIHTLMPAIIKAS  367 (456)
T ss_dssp             --GGGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred             --ccCCCCCEEEEcCCCCcCHHHHHHHHHHHH
Confidence              001235789999999999999999998754

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.89  E-value=1.6e-23  Score=163.31  Aligned_cols=150  Identities=20%  Similarity=0.276  Sum_probs=106.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc----cCCCCCcceeEEEeCCE-EEEEEEcCChhhhHhh-------HHhhcc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ----HQPTQYPTSEELSIGKI-KFKAFDLGGHQIARRV-------WKDYYA   86 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~-~~~~~D~~G~~~~~~~-------~~~~~~   86 (193)
                      ..++|+|+|++|+|||||++++.+.++..    ...|.......+.+.+. .+.+|||||+..+..+       ...++.
T Consensus        33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~  112 (423)
T 3qq5_A           33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFY  112 (423)
T ss_dssp             CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHh
Confidence            56899999999999999999999887642    22355666667776654 9999999998765432       345678


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCc
Q 029437           87 KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVR  166 (193)
Q Consensus        87 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (193)
                      .+|++++|+|+...+.   ...++..+...    ++|+++|+||+|+...... +..+.+....                
T Consensus       113 ~aD~vllVvD~~~~~~---~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~----------------  168 (423)
T 3qq5_A          113 RADCGILVTDSAPTPY---EDDVVNLFKEM----EIPFVVVVNKIDVLGEKAE-ELKGLYESRY----------------  168 (423)
T ss_dssp             SCSEEEEECSSSCCHH---HHHHHHHHHHT----TCCEEEECCCCTTTTCCCT-HHHHHSSCCT----------------
T ss_pred             cCCEEEEEEeCCChHH---HHHHHHHHHhc----CCCEEEEEeCcCCCCccHH-HHHHHHHHHc----------------
Confidence            8999999999943332   33444444332    8999999999999855443 3333333222                


Q ss_pred             ceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          167 PLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       167 ~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .++++++||++|.|++++|++|.+.+
T Consensus       169 g~~v~~vSAktg~gI~eL~~~L~~~l  194 (423)
T 3qq5_A          169 EAKVLLVSALQKKGFDDIGKTISEIL  194 (423)
T ss_dssp             TCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            24689999999999999999998876

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.89  E-value=4e-23  Score=162.98  Aligned_cols=149  Identities=17%  Similarity=0.223  Sum_probs=100.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc--cCC--CCCcceeEEEeCCEEEEEEEcCChhhhHhhH--------Hhhc
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ--HQP--TQYPTSEELSIGKIKFKAFDLGGHQIARRVW--------KDYY   85 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--------~~~~   85 (193)
                      ...++|+++|++|+|||||+|++.+.++..  ..+  |.+.....+..++..+.+|||||........        ...+
T Consensus       222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~  301 (462)
T 3geh_A          222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA  301 (462)
T ss_dssp             HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence            356899999999999999999999876432  222  3344556778889999999999986654322        2356


Q ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCC
Q 029437           86 AKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNV  165 (193)
Q Consensus        86 ~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (193)
                      ..+|++++|+|++++.+... ..++..+      .+.|+++|+||+|+.+.....    ..  .             ...
T Consensus       302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~----~~--~-------------~~~  355 (462)
T 3geh_A          302 NTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT----SL--E-------------YPE  355 (462)
T ss_dssp             CSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST----TC--C-------------CCT
T ss_pred             hcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH----HH--H-------------Hhc
Confidence            78999999999998755433 3444443      246999999999997432211    00  0             001


Q ss_pred             cceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          166 RPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       166 ~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ...+++++||++|.|+++++++|.+.+
T Consensus       356 ~~~~~i~iSAktg~Gi~eL~~~i~~~~  382 (462)
T 3geh_A          356 NITQIVHTAAAQKQGIDSLETAILEIV  382 (462)
T ss_dssp             TCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            235689999999999999999998764

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.88  E-value=7e-22  Score=151.77  Aligned_cols=154  Identities=19%  Similarity=0.126  Sum_probs=105.6

Q ss_pred             CccE-EEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCCEEEEEEEcCCh---------hhhHhhHHhhc
Q 029437           19 KEAK-ILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGKIKFKAFDLGGH---------QIARRVWKDYY   85 (193)
Q Consensus        19 ~~~~-i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~G~---------~~~~~~~~~~~   85 (193)
                      ..++ |+++|++|||||||++++.+..+..   ..+|.++....+.+++..+.+|||+|.         +.+..... .+
T Consensus       177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~  255 (364)
T 2qtf_A          177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EA  255 (364)
T ss_dssp             --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GG
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HH
Confidence            3455 9999999999999999999887532   345777788888888899999999996         22333333 46


Q ss_pred             ccCCEEEEEEECCChh--hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHH-------HhhCCCccccCCC
Q 029437           86 AKVDAVVYLVDAYDKE--RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELR-------YHLGLSNFTTGKG  156 (193)
Q Consensus        86 ~~~d~vl~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~-------~~~~~~~~~~~~~  156 (193)
                      ..+|++++|+|++++.  ...... .+..++......+.|+++|+||+|+.... ..+..       ..+.  .      
T Consensus       256 ~~aD~il~VvD~s~~~~~~~~~~~-~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~--~------  325 (364)
T 2qtf_A          256 KYSDALILVIDSTFSENLLIETLQ-SSFEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELY--S------  325 (364)
T ss_dssp             GGSSEEEEEEETTSCHHHHHHHHH-HHHHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHC--S------
T ss_pred             HhCCEEEEEEECCCCcchHHHHHH-HHHHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhc--C------
Confidence            8899999999998875  333332 23333333334578999999999997543 22211       1110  0      


Q ss_pred             ccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          157 KVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       157 ~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                               ...+++++||++|.|+++++++|.+.+
T Consensus       326 ---------~~~~~~~~SA~~g~gi~~L~~~I~~~l  352 (364)
T 2qtf_A          326 ---------PIFDVIPISALKRTNLELLRDKIYQLA  352 (364)
T ss_dssp             ---------CEEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             ---------CCCcEEEEECCCCcCHHHHHHHHHHHh
Confidence                     124679999999999999999998754

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.88  E-value=4.3e-23  Score=145.46  Aligned_cols=129  Identities=23%  Similarity=0.340  Sum_probs=94.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhccc----CCEEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK----VDAVVY   93 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~----~d~vl~   93 (193)
                      ...++|+++|++|||||||++++.+..+....++..+... ..+....+.+|||||+..+...+..++..    +|++++
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~  124 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIF  124 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee-eeecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEE
Confidence            5678999999999999999999998876542222222111 12256788999999998876666555554    899999


Q ss_pred             EEECC-ChhhHHHHHHHHHHHHcCC---CCCCCcEEEEEeCCCCCCCCCHHHHHHhhC
Q 029437           94 LVDAY-DKERFAESKKELDALLSDE---ALANVPFLVLGNKIDIPYAASEEELRYHLG  147 (193)
Q Consensus        94 v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~pviiv~nK~D~~~~~~~~~~~~~~~  147 (193)
                      |+|++ +++++.....++..++...   ...+.|+++|+||+|+......+++.+.+.
T Consensus       125 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~  182 (193)
T 2ged_A          125 MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALE  182 (193)
T ss_dssp             EEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred             EEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHH
Confidence            99999 8889988888888876432   225899999999999987777776665553

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.88  E-value=6.3e-23  Score=162.41  Aligned_cols=152  Identities=18%  Similarity=0.239  Sum_probs=103.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCEEEEEEEcCC--------hhhhHhhHHhh
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGG--------HQIARRVWKDY   84 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G--------~~~~~~~~~~~   84 (193)
                      .+...+|+|+|.+|||||||+|++.+..+....+    |.+.....+.+.+..+.+|||||        +..+......+
T Consensus        20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~   99 (456)
T 4dcu_A           20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA   99 (456)
T ss_dssp             ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence            4566899999999999999999999887654333    33444555666778999999999        77778888888


Q ss_pred             cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCC
Q 029437           85 YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSN  164 (193)
Q Consensus        85 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (193)
                      +..+|++|+|+|+.+..  .....++..++..   .++|+++++||+|+....  .+..+.+..                
T Consensus       100 ~~~ad~il~VvD~~~~~--~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~~l----------------  156 (456)
T 4dcu_A          100 MDEADVIIFMVNGREGV--TAADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYSL----------------  156 (456)
T ss_dssp             HHHCSEEEEEEESSSCS--CHHHHHHHHHHTT---CCSCEEEEEECC-----------CCSGGG----------------
T ss_pred             HhhCCEEEEEEeCCCCC--ChHHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHHHc----------------
Confidence            89999999999987642  3344555555543   589999999999986321  111111111                


Q ss_pred             CcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          165 VRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                       .....+++||++|.|++++++++.+.+
T Consensus       157 -g~~~~~~iSA~~g~gv~~L~~~i~~~l  183 (456)
T 4dcu_A          157 -GFGEPYPISGTHGLGLGDLLDAVAEHF  183 (456)
T ss_dssp             -SSSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred             -CCCceEEeecccccchHHHHHHHHhhc
Confidence             111346999999999999999997654

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.88  E-value=2.4e-22  Score=151.04  Aligned_cols=152  Identities=16%  Similarity=0.140  Sum_probs=103.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccccC----CCCCcceeEEEeCCEEEEEEEcCChh-hhH--------hhHHhhcc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQ----PTQYPTSEELSIGKIKFKAFDLGGHQ-IAR--------RVWKDYYA   86 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~-~~~--------~~~~~~~~   86 (193)
                      ..+|+|+|++|||||||++++.+..+....    .|.......+..++..+.+|||||.. ...        ......+.
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~   87 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIG   87 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHh
Confidence            457999999999999999999998765322    23333445566778899999999986 322        12234567


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCCCC
Q 029437           87 KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADSNV  165 (193)
Q Consensus        87 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (193)
                      .+|++++|+|+++.   .....++...+..   .+.|+++++||+|+... ....+....+....               
T Consensus        88 ~~D~vl~Vvd~~~~---~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~---------------  146 (301)
T 1ega_A           88 DVELVIFVVEGTRW---TPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQM---------------  146 (301)
T ss_dssp             CEEEEEEEEETTCC---CHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTS---------------
T ss_pred             cCCEEEEEEeCCCC---CHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHHHhc---------------
Confidence            89999999999762   2222333333332   47899999999999741 11112222221111               


Q ss_pred             cceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          166 RPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       166 ~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ....++++||++|.|+++++++|.+.+
T Consensus       147 ~~~~~i~iSA~~g~~v~~l~~~i~~~l  173 (301)
T 1ega_A          147 NFLDIVPISAETGLNVDTIAAIVRKHL  173 (301)
T ss_dssp             CCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred             CcCceEEEECCCCCCHHHHHHHHHHhC
Confidence            123689999999999999999998754

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.88  E-value=2.5e-21  Score=151.30  Aligned_cols=159  Identities=17%  Similarity=0.123  Sum_probs=100.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc---c---cCCCCCcceeEEEe---------------C--------CEEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV---Q---HQPTQYPTSEELSI---------------G--------KIKFK   67 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~---~---~~~t~~~~~~~~~~---------------~--------~~~~~   67 (193)
                      .+..++|+++|++++|||||+++|.+....   .   ...|.+........               .        ...+.
T Consensus         5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   84 (408)
T 1s0u_A            5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS   84 (408)
T ss_dssp             CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence            356789999999999999999999854321   1   11244433222111               1        26899


Q ss_pred             EEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC----HHHHH
Q 029437           68 AFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS----EEELR  143 (193)
Q Consensus        68 ~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~----~~~~~  143 (193)
                      +|||||++.+...+...+..+|++++|+|++++....+..+.+..+ ...  ...|+++++||+|+.....    .+++.
T Consensus        85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~i~  161 (408)
T 1s0u_A           85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL-EIL--GIDKIIIVQNKIDLVDEKQAEENYEQIK  161 (408)
T ss_dssp             EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH-HHT--TCCCEEEEEECTTSSCTTTTTTHHHHHH
T ss_pred             EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH-HHc--CCCeEEEEEEccCCCCHHHHHHHHHHHH
Confidence            9999999999888777888999999999998642111222222222 111  2358999999999975432    23333


Q ss_pred             HhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          144 YHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +.+....              ....+++++||++|.|+++++++|.+.+
T Consensus       162 ~~l~~~~--------------~~~~~~i~vSA~~g~gi~~L~~~l~~~i  196 (408)
T 1s0u_A          162 EFVKGTI--------------AENAPIIPISAHHEANIDVLLKAIQDFI  196 (408)
T ss_dssp             HHHTTST--------------TTTCCEEEC------CHHHHHHHHHHHS
T ss_pred             HHHhhcC--------------CCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            3332111              1346799999999999999999998754

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.88  E-value=1.2e-21  Score=156.78  Aligned_cols=125  Identities=18%  Similarity=0.148  Sum_probs=94.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc------------------CCcc-------ccCCCCCcceeEEEeCCEEEEEEEcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD------------------ERLV-------QHQPTQYPTSEELSIGKIKFKAFDLGG   73 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~------------------~~~~-------~~~~t~~~~~~~~~~~~~~~~~~D~~G   73 (193)
                      +..+|+|+|++|+|||||+++|+.                  ....       ....|.......+.+.+..+++|||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG   91 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG   91 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence            346899999999999999999961                  1111       123466677788889999999999999


Q ss_pred             hhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---HHHHHHhhCC
Q 029437           74 HQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---EEELRYHLGL  148 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~~~~  148 (193)
                      +..+.......++.+|++|+|+|+++..+.+.. ..|.....    .++|+++++||+|+.....   .+++.+.++.
T Consensus        92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~~~~~~----~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~  164 (528)
T 3tr5_A           92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLMEVCRL----RHTPIMTFINKMDRDTRPSIELLDEIESILRI  164 (528)
T ss_dssp             STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHHHHHHT----TTCCEEEEEECTTSCCSCHHHHHHHHHHHHCC
T ss_pred             chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEeCCCCccccHHHHHHHHHHhhCC
Confidence            999988888899999999999999986554433 34444432    3789999999999975432   2335555543

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.88  E-value=3.9e-22  Score=147.08  Aligned_cols=158  Identities=11%  Similarity=0.029  Sum_probs=103.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC-ccc-cC---CCCCcceeEEEeCCEEEEEEEcCChhhh-----------Hhh
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDER-LVQ-HQ---PTQYPTSEELSIGKIKFKAFDLGGHQIA-----------RRV   80 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~-~~---~t~~~~~~~~~~~~~~~~~~D~~G~~~~-----------~~~   80 (193)
                      ....++|+|+|++|||||||++++.+.. +.. ..   .|.......+.+.+..+.+|||||+...           ...
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~   98 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC   98 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence            3467899999999999999999999877 332 11   3445555667788899999999997543           222


Q ss_pred             HHhhcccCCEEEEEEECCChhh-HHHHHHHHHHHHcCCCCCCCcEEEEEe-CCCCCCCCCHHH------------HHHhh
Q 029437           81 WKDYYAKVDAVVYLVDAYDKER-FAESKKELDALLSDEALANVPFLVLGN-KIDIPYAASEEE------------LRYHL  146 (193)
Q Consensus        81 ~~~~~~~~d~vl~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~pviiv~n-K~D~~~~~~~~~------------~~~~~  146 (193)
                      ....++.+|++++|+|+++... ...+..++......  ....|+++++| |+|+... ...+            +...+
T Consensus        99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~  175 (260)
T 2xtp_A           99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC  175 (260)
T ss_dssp             HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred             HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence            2346688999999999986322 22333444444321  11457777777 9999743 3333            22222


Q ss_pred             CCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          147 GLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +..+               .....+++||++|.|++++|++|.+.+
T Consensus       176 ~~~~---------------~~~~~~~~SA~~~~gv~~l~~~i~~~~  206 (260)
T 2xtp_A          176 GGRI---------------CAFNNRAEGSNQDDQVKELMDCIEDLL  206 (260)
T ss_dssp             TTCE---------------EECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeE---------------EEecCcccccccHHHHHHHHHHHHHHH
Confidence            2111               001117899999999999999998754

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.88  E-value=6.4e-24  Score=169.56  Aligned_cols=157  Identities=19%  Similarity=0.134  Sum_probs=112.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcccc---CCCCCcceeEEEe-CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQH---QPTQYPTSEELSI-GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL   94 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v   94 (193)
                      +.++|+++|++|+|||||+++|.+..+...   ..|.......+.. .+..+.+|||||+..+..++...++.+|++++|
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV   82 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILV   82 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence            457899999999999999999987765432   2244444444544 456899999999999999888889999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---HHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437           95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      +|+++....+. .+.+.....    .++|+++++||+|+.....   ..++. ......           ..+....+++
T Consensus        83 VDa~dg~~~qt-~e~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~-~~~~~~-----------e~~~~~~~iv  145 (537)
T 3izy_P           83 VAADDGVMKQT-VESIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELL-AYDVVC-----------EDYGGDVQAV  145 (537)
T ss_dssp             CBSSSCCCHHH-HHHHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHH-HTTSCC-----------CCSSSSEEEC
T ss_pred             EECCCCccHHH-HHHHHHHHH----cCCcEEEEEecccccccchHHHHHHHH-hhhhhH-----------HhcCCCceEE
Confidence            99988654333 333333322    4789999999999974321   11121 111111           1222457899


Q ss_pred             EeeeecCCChhhHHHhhhhhc
Q 029437          172 MCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       172 ~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++||++|.|+++++++|...+
T Consensus       146 ~vSAktG~GI~eLle~I~~l~  166 (537)
T 3izy_P          146 HVSALTGENMMALAEATIALA  166 (537)
T ss_dssp             CCCSSSSCSSHHHHHHHHHHH
T ss_pred             EEECCCCCCchhHHHHHHHhh
Confidence            999999999999999997653

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.87  E-value=2.8e-22  Score=159.72  Aligned_cols=157  Identities=18%  Similarity=0.059  Sum_probs=103.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCc--c--------------------------------ccCCCCCcceeEEEeC
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERL--V--------------------------------QHQPTQYPTSEELSIG   62 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~--~--------------------------------~~~~t~~~~~~~~~~~   62 (193)
                      .+..++|+++|++|+|||||+++|+....  .                                ....|.......+...
T Consensus        30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~  109 (483)
T 3p26_A           30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  109 (483)
T ss_dssp             SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence            56779999999999999999999965410  0                                0123555566677778


Q ss_pred             CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHH------HHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437           63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFA------ESKKELDALLSDEALANVPFLVLGNKIDIPYA  136 (193)
Q Consensus        63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~------~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  136 (193)
                      +..+.+|||||++.+...+...+..+|++|+|+|++++....      ...+.+. +....  ...|+++++||+|+...
T Consensus       110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~-~~~~~--~~~~iIvviNK~Dl~~~  186 (483)
T 3p26_A          110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHML-LASSL--GIHNLIIAMNKMDNVDW  186 (483)
T ss_dssp             SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHH-HHHHT--TCCCEEEEEECGGGGTT
T ss_pred             CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHH-HHHHc--CCCcEEEEEECcCcccc
Confidence            899999999999999999899999999999999998864321      1222222 21111  23579999999999752


Q ss_pred             C--CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhH
Q 029437          137 A--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDG  184 (193)
Q Consensus       137 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el  184 (193)
                      .  ..+++.+.+.........        ....++++++||++|.|++++
T Consensus       187 ~~~~~~~i~~~~~~~l~~~g~--------~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          187 SQQRFEEIKSKLLPYLVDIGF--------FEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTC--------CGGGEEEEECCSSSCTTSSSS
T ss_pred             hHHHHHHHHHHHHHHHHHcCC--------CcccceEEEEeeecCCCcccc
Confidence            1  122222222111000000        003578999999999999864

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.87  E-value=9.4e-22  Score=159.17  Aligned_cols=150  Identities=20%  Similarity=0.194  Sum_probs=103.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC--ccc----------------cCCCCCcceeEEEeC-----CEEEEEEEcCChhh
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER--LVQ----------------HQPTQYPTSEELSIG-----KIKFKAFDLGGHQI   76 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~--~~~----------------~~~t~~~~~~~~~~~-----~~~~~~~D~~G~~~   76 (193)
                      -.+|+|+|++|+|||||+++++...  ...                ...|.......+.+.     .+.+++|||||+..
T Consensus         4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d   83 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD   83 (599)
T ss_dssp             EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence            4589999999999999999997521  110                112333334445443     37899999999999


Q ss_pred             hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH----HHHhhCCCccc
Q 029437           77 ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE----LRYHLGLSNFT  152 (193)
Q Consensus        77 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~----~~~~~~~~~~~  152 (193)
                      +.......+..+|++++|+|+++..+.+....|.... .    .++|+++++||+|+..+. .++    +.+.++...  
T Consensus        84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~-~~~v~~ei~~~lg~~~--  155 (599)
T 3cb4_D           84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAAD-PERVAEEIEDIVGIDA--  155 (599)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHHTCCCC--
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCccccc-HHHHHHHHHHHhCCCc--
Confidence            9988888899999999999998876555554444433 2    378999999999997543 333    333333221  


Q ss_pred             cCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          153 TGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                                     .+++++||++|.|+++++++|.+.+
T Consensus       156 ---------------~~vi~vSAktg~GI~~Ll~~I~~~l  180 (599)
T 3cb4_D          156 ---------------TDAVRCSAKTGVGVQDVLERLVRDI  180 (599)
T ss_dssp             ---------------TTCEEECTTTCTTHHHHHHHHHHHS
T ss_pred             ---------------ceEEEeecccCCCchhHHHHHhhcC
Confidence                           2378999999999999999998765

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.87  E-value=2e-21  Score=157.06  Aligned_cols=155  Identities=17%  Similarity=0.178  Sum_probs=107.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC--ccc----------------cCCCCCcceeEEEeC-----CEEEEEEEcCChh
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER--LVQ----------------HQPTQYPTSEELSIG-----KIKFKAFDLGGHQ   75 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~----------------~~~t~~~~~~~~~~~-----~~~~~~~D~~G~~   75 (193)
                      .-.+|+++|++++|||||+++++...  ...                ...|.......+.+.     .+.+++|||||+.
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            34689999999999999999997521  110                112333333444443     3789999999999


Q ss_pred             hhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCC
Q 029437           76 IARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGK  155 (193)
Q Consensus        76 ~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  155 (193)
                      .+.......+..+|++++|+|+++..+.+....|.... .    .++|+++++||+|+..+. .++..+++....   ..
T Consensus        85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~l---g~  155 (600)
T 2ywe_A           85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSAD-VDRVKKQIEEVL---GL  155 (600)
T ss_dssp             GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHTS---CC
T ss_pred             hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccC-HHHHHHHHHHhh---CC
Confidence            99888888889999999999999876665555544433 2    488999999999997543 443333322111   00


Q ss_pred             CccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          156 GKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                                ...+++++||++|.|+++++++|.+.+
T Consensus       156 ----------~~~~vi~vSAktg~GI~~Lle~I~~~l  182 (600)
T 2ywe_A          156 ----------DPEEAILASAKEGIGIEEILEAIVNRI  182 (600)
T ss_dssp             ----------CGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred             ----------CcccEEEEEeecCCCchHHHHHHHHhc
Confidence                      112479999999999999999998765

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.87  E-value=9.8e-22  Score=154.93  Aligned_cols=156  Identities=19%  Similarity=0.188  Sum_probs=103.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc--c--CCCCCcceeEEEeCCEEEEEEEcCChhhhHhhH------------H
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ--H--QPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW------------K   82 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~--~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~------------~   82 (193)
                      ..++|+++|++|||||||++++.+.....  .  ..|.+.....+.+.+..+.+|||+|..+.....            .
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~  258 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV  258 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence            45899999999999999999999887532  2  224556667788888899999999975432211            2


Q ss_pred             hhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC--CHHHHHHhhCCCccccCCCcccc
Q 029437           83 DYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA--SEEELRYHLGLSNFTTGKGKVNL  160 (193)
Q Consensus        83 ~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  160 (193)
                      ..+..+|++++|+|+.+..+.+.  ..+...+..   .+.|+++++||+|+....  ..+++.+.+...+          
T Consensus       259 ~~i~~ad~vllv~d~~~~~~~~~--~~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~----------  323 (439)
T 1mky_A          259 DSIEKADVVVIVLDATQGITRQD--QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKL----------  323 (439)
T ss_dssp             HHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHC----------
T ss_pred             HHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHh----------
Confidence            34578999999999987654433  222233222   478999999999997432  2333332221111          


Q ss_pred             CCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          161 ADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       161 ~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                        ......+++++||++|.|++++|+.|.+.
T Consensus       324 --~~~~~~~~~~~SA~~g~gv~~l~~~i~~~  352 (439)
T 1mky_A          324 --YFIDYSPLIFTSADKGWNIDRMIDAMNLA  352 (439)
T ss_dssp             --GGGTTSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             --ccCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence              00023568999999999999999998764

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.87  E-value=2.3e-21  Score=151.55  Aligned_cols=155  Identities=15%  Similarity=0.138  Sum_probs=106.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCc---cc---cCCCCCcceeEEEe---------------C--------CEEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERL---VQ---HQPTQYPTSEELSI---------------G--------KIKFK   67 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~---~~---~~~t~~~~~~~~~~---------------~--------~~~~~   67 (193)
                      .+..++|+++|++++|||||+++|.+...   ..   ...|.+.......+               .        ...+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            46678999999999999999999985432   11   11244443322222               0        26899


Q ss_pred             EEEcCChhhhHhhHHhhcccCCEEEEEEECCCh----hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH----
Q 029437           68 AFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDK----ERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE----  139 (193)
Q Consensus        68 ~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~----  139 (193)
                      +|||||+..+...+...+..+|++++|+|+++.    ++.+.+. .+...      ...|+++++||+|+......    
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~-~~~~~------~~~~iivviNK~Dl~~~~~~~~~~  159 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM-ALQII------GQKNIIIAQNKIELVDKEKALENY  159 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH-HHHHH------TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH-HHHHc------CCCcEEEEEECccCCCHHHHHHHH
Confidence            999999999988877788899999999999864    3333322 22211      23589999999999753211    


Q ss_pred             HHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          140 EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++.+.+...              .....+++++||++|.|+++++++|.+.+
T Consensus       160 ~~i~~~l~~~--------------~~~~~~~i~vSA~~g~gi~~L~~~l~~~~  198 (410)
T 1kk1_A          160 RQIKEFIEGT--------------VAENAPIIPISALHGANIDVLVKAIEDFI  198 (410)
T ss_dssp             HHHHHHHTTS--------------TTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHhc--------------CcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            1222222211              11346799999999999999999998754

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.87  E-value=6e-23  Score=162.77  Aligned_cols=156  Identities=20%  Similarity=0.187  Sum_probs=109.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcccc---CCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQH---QPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      +..+|+++|++++|||||++++.+..+...   ..|.......+.+++..+++|||||+..+..++...+..+|++++|+
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVV   82 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVV   82 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEe
Confidence            457899999999999999999987554421   12444444455566778999999999999888888889999999999


Q ss_pred             ECCCh---hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           96 DAYDK---ERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        96 d~~~~---~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      |+++.   ++.+.    +....    ..++|+++++||+|+.... .+++...+...        ..+++.+....++++
T Consensus        83 da~~g~~~qT~e~----l~~~~----~~~vPiIVviNKiDl~~~~-~~~v~~~l~~~--------~~~~~~~~~~~~~v~  145 (501)
T 1zo1_I           83 AADDGVMPQTIEA----IQHAK----AAQVPVVVAVNKIDKPEAD-PDRVKNELSQY--------GILPEEWGGESQFVH  145 (501)
T ss_dssp             ETTTBSCTTTHHH----HHHHH----HTTCCEEEEEECSSSSTTC-CCCTTCCCCCC--------CCCTTCCSSSCEEEE
T ss_pred             ecccCccHHHHHH----HHHHH----hcCceEEEEEEeccccccC-HHHHHHHHHHh--------hhhHHHhCCCccEEE
Confidence            99873   33322    22221    1478999999999997432 11111111100        011122223478999


Q ss_pred             eeeecCCChhhHHHhhhhh
Q 029437          173 CSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~  191 (193)
                      +||++|.|+++++++|...
T Consensus       146 vSAktG~gI~eLle~I~~~  164 (501)
T 1zo1_I          146 VSAKAGTGIDELLDAILLQ  164 (501)
T ss_dssp             CCTTTCTTCTTHHHHTTTT
T ss_pred             EeeeeccCcchhhhhhhhh
Confidence            9999999999999999753

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.87  E-value=1.8e-21  Score=146.15  Aligned_cols=169  Identities=14%  Similarity=0.108  Sum_probs=105.3

Q ss_pred             HHHHHHHHhhCC--CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-------CCC----------------------CC
Q 029437            5 DWFYGVLASLGL--WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-------QPT----------------------QY   53 (193)
Q Consensus         5 ~~~~~~~~~~~~--~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-------~~t----------------------~~   53 (193)
                      +-+.+.+...+.  ....++|+|+|.+|||||||++++++..+.+.       .|+                      ..
T Consensus         9 ~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt   88 (299)
T 2aka_B            9 NRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTD   88 (299)
T ss_dssp             HHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCC
T ss_pred             HHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCC
Confidence            334444444432  24668999999999999999999999886421       121                      00


Q ss_pred             cc-------------------------eeEEEeC-CEEEEEEEcCChh-------------hhHhhHHhhcccCCEEE-E
Q 029437           54 PT-------------------------SEELSIG-KIKFKAFDLGGHQ-------------IARRVWKDYYAKVDAVV-Y   93 (193)
Q Consensus        54 ~~-------------------------~~~~~~~-~~~~~~~D~~G~~-------------~~~~~~~~~~~~~d~vl-~   93 (193)
                      ..                         ...+... ...+.+|||||..             .+..+...++..++.++ +
T Consensus        89 ~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~  168 (299)
T 2aka_B           89 FEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILA  168 (299)
T ss_dssp             HHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEE
T ss_pred             HHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEE
Confidence            00                         0001111 3689999999953             34566677778888666 7


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC-HHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      |+|+++..+......++..+ .   ..+.|+++|+||+|+..... ..+.   +....          .........+++
T Consensus       169 v~d~~~~~~~~~~~~~~~~~-~---~~~~~~i~V~NK~Dl~~~~~~~~~~---~~~~~----------~~~~~~~~~v~~  231 (299)
T 2aka_B          169 VSPANSDLANSDALKIAKEV-D---PQGQRTIGVITKLDLMDEGTDARDV---LENKL----------LPLRRGYIGVVN  231 (299)
T ss_dssp             EEESSSCGGGCHHHHHHHHH-C---TTCSSEEEEEECGGGSCTTCCCHHH---HTTCS----------SCCTTCEEECCC
T ss_pred             EecCCcchhhhHHHHHHHHh-C---CCCCeEEEEEEccccCCCCchHHHH---HhCCc----------CcCCCCcEEEEC
Confidence            99998754333333333333 2   24789999999999974322 1111   11110          000012357899


Q ss_pred             eeeecCCChhhHHHhhhh
Q 029437          173 CSIVRKMGYGDGFKWLSQ  190 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~  190 (193)
                      +||++|.|+++++++|.+
T Consensus       232 ~SA~~~~gi~~l~~~l~~  249 (299)
T 2aka_B          232 RSQKDIDGKKDITAALAA  249 (299)
T ss_dssp             CCCBCTTSCBCHHHHHHH
T ss_pred             CChhhccccccHHHHHHH
Confidence            999999999999999864

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.86  E-value=4.6e-21  Score=150.85  Aligned_cols=159  Identities=19%  Similarity=0.171  Sum_probs=104.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc----------------------------------ccCCCCCcceeEEEeC
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV----------------------------------QHQPTQYPTSEELSIG   62 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~----------------------------------~~~~t~~~~~~~~~~~   62 (193)
                      .+..++|+++|++|+|||||+++|+...-.                                  ....|.+.....+..+
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~   93 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE   93 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence            456799999999999999999999543100                                  0123444455567777


Q ss_pred             CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhh---H---HHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCC
Q 029437           63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKER---F---AESKKELDALLSDEALANVP-FLVLGNKIDIPY  135 (193)
Q Consensus        63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~  135 (193)
                      +..+.+|||||++++...+...+..+|++++|+|+++...   +   .+..+.+.....    .++| +++++||+|+..
T Consensus        94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~  169 (439)
T 3j2k_7           94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPT  169 (439)
T ss_pred             CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCcc
Confidence            8899999999999999888888999999999999987531   1   122222222211    3566 999999999963


Q ss_pred             CCC----HHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHH
Q 029437          136 AAS----EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFK  186 (193)
Q Consensus       136 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~  186 (193)
                      ...    .+++.+++..........       ....++++++||++|.|++++.+
T Consensus       170 ~~~~~~~~~~i~~~~~~~l~~~g~~-------~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          170 VNWSNERYEECKEKLVPFLKKVGFN-------PKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhccc-------ccCCeeEEEeeccCCcccccccc
Confidence            221    122222221110000000       00146899999999999998544

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.86  E-value=3.8e-21  Score=145.50  Aligned_cols=143  Identities=15%  Similarity=0.206  Sum_probs=102.1

Q ss_pred             CCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECC----------ChhhHHHHHHHHHHHHcCCCC
Q 029437           50 PTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAY----------DKERFAESKKELDALLSDEAL  119 (193)
Q Consensus        50 ~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~----------~~~~~~~~~~~~~~~~~~~~~  119 (193)
                      +|.+.....+.++++.+++||++|+++++..+..++++++++|+|+|++          +.+++.+...++..+.+....
T Consensus       147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~  226 (340)
T 4fid_A          147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL  226 (340)
T ss_dssp             CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred             ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence            3456666677788899999999999999999999999999999999998          678899999999999887777


Q ss_pred             CCCcEEEEEeCCCCCCC-----------------CCHHHHHHhhCCCc------cccCCCcc----ccCCCCCcceEEEE
Q 029437          120 ANVPFLVLGNKIDIPYA-----------------ASEEELRYHLGLSN------FTTGKGKV----NLADSNVRPLEVFM  172 (193)
Q Consensus       120 ~~~pviiv~nK~D~~~~-----------------~~~~~~~~~~~~~~------~~~~~~~~----~~~~~~~~~~~~~~  172 (193)
                      .++|+++++||+|+...                 ...++..+.+...+      ........    +......+.+-+++
T Consensus       227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~  306 (340)
T 4fid_A          227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP  306 (340)
T ss_dssp             TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred             CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence            89999999999998520                 11222111111111      00000000    00000013577899


Q ss_pred             eeeecCCChhhHHHhhhhhc
Q 029437          173 CSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~~  192 (193)
                      |||++..||+++|+.+.+.+
T Consensus       307 TsA~dt~nv~~vF~~v~~~I  326 (340)
T 4fid_A          307 TNATDGSNIKRVFMLAVDVI  326 (340)
T ss_dssp             ECTTCHHHHHHHHHHHHHHH
T ss_pred             EEeeCcHHHHHHHHHHHHHH
Confidence            99999999999999887654

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.86  E-value=5.8e-22  Score=161.26  Aligned_cols=161  Identities=19%  Similarity=0.082  Sum_probs=107.3

Q ss_pred             hhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccc----------------------------------cCCCCCcceeE
Q 029437           13 SLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ----------------------------------HQPTQYPTSEE   58 (193)
Q Consensus        13 ~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~----------------------------------~~~t~~~~~~~   58 (193)
                      ++...+..++|+++|++|+|||||+++|++.....                                  ...|.......
T Consensus       160 ~l~~~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~  239 (611)
T 3izq_1          160 FVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSH  239 (611)
T ss_dssp             -CCCCCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCE
T ss_pred             HHhccCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEE
Confidence            33445678999999999999999999998653210                                  23366666777


Q ss_pred             EEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh---hH---HHHHHHHHHHHcCCCCCCCcEEEEEeCCC
Q 029437           59 LSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE---RF---AESKKELDALLSDEALANVPFLVLGNKID  132 (193)
Q Consensus        59 ~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~pviiv~nK~D  132 (193)
                      +...+..+.+|||||+..+...+...+..+|++|+|+|+++..   ++   .+..+.+... ..  ....|+|+++||+|
T Consensus       240 ~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~-~~--lgi~~iIVVvNKiD  316 (611)
T 3izq_1          240 FSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SS--LGIHNLIIAMNKMD  316 (611)
T ss_dssp             EECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH-HT--TTCCEEEEEEECTT
T ss_pred             EecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHH-HH--cCCCeEEEEEeccc
Confidence            8888899999999999999988888899999999999998742   00   1222222222 22  12345999999999


Q ss_pred             CCCCC--CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhH
Q 029437          133 IPYAA--SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDG  184 (193)
Q Consensus       133 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el  184 (193)
                      +....  ..+++.+.+.........        ....++++++||++|.|++++
T Consensus       317 l~~~~~~~~~ei~~~l~~~l~~~g~--------~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          317 NVDWSQQRFEEIKSKLLPYLVDIGF--------FEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             TTTTCHHHHHHHHHHHHHHHHHHTC--------CGGGCEEEECCTTTCTTTSSC
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhcc--------cccCccEEeeecccCCCcccc
Confidence            97521  112222222111000000        002468999999999999876

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.86  E-value=2.2e-21  Score=151.47  Aligned_cols=163  Identities=17%  Similarity=0.128  Sum_probs=109.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC--------Ccc------------ccCCCCCcceeEEEeCCEEEEEEEcCChhh
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDE--------RLV------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQI   76 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~--------~~~------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~   76 (193)
                      .+..++|+++|++|+|||||+++|.+.        .+.            ....|.......+...+..+.+|||||+..
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            456789999999999999999999863        211            112244444455666778999999999999


Q ss_pred             hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCCCCC-HHHHHHhhCCCccccC
Q 029437           77 ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIPYAAS-EEELRYHLGLSNFTTG  154 (193)
Q Consensus        77 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~  154 (193)
                      +...+...+..+|++++|+|+++... .+..+++.....    .++| +++++||+|+..... .+++.++.........
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~  162 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE  162 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence            98888888899999999999988643 334445544432    3678 899999999974211 1111111110000000


Q ss_pred             CCccccCCCCCcceEEEEeeeecCCC------------------hhhHHHhhhhhc
Q 029437          155 KGKVNLADSNVRPLEVFMCSIVRKMG------------------YGDGFKWLSQYI  192 (193)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~Sa~~g~g------------------v~el~~~i~~~~  192 (193)
                      .        .....+++++||++|.|                  +++++++|.+.+
T Consensus       163 ~--------~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l  210 (405)
T 2c78_A          163 F--------PGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI  210 (405)
T ss_dssp             S--------CTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred             c--------cccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence            0        00235789999999987                  788888887654

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.86  E-value=6e-22  Score=152.53  Aligned_cols=149  Identities=11%  Similarity=0.029  Sum_probs=107.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE  101 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~  101 (193)
                      +|+++|++++|||||+++|.     ....|.+.....+.+++..+.+|||||++++.......+..+|++++|+| ++. 
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g-   95 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQG-   95 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTC-
T ss_pred             EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCC-
Confidence            99999999999999999998     33456666677777788899999999999998777778899999999999 543 


Q ss_pred             hHHHHHHHHHHHHcCCCCCCCcE-EEEEe-CCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE--eeeec
Q 029437          102 RFAESKKELDALLSDEALANVPF-LVLGN-KIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM--CSIVR  177 (193)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~pv-iiv~n-K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~  177 (193)
                      ...+..+++.....    .++|. ++++| |+|+ .....++..+++....          .......+++++  +||++
T Consensus        96 ~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l----------~~~~~~~~~ii~~~~SA~~  160 (370)
T 2elf_A           96 LDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVIT----------SGTVLQDWECISLNTNKSA  160 (370)
T ss_dssp             CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHT----------TTSTTTTCEEEECCCCTTS
T ss_pred             CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHH----------HhcCCCceEEEeccccccc
Confidence            23444455444322    36777 89999 9999 4322222222221111          000013468999  99999


Q ss_pred             ---CCChhhHHHhhhhhc
Q 029437          178 ---KMGYGDGFKWLSQYI  192 (193)
Q Consensus       178 ---g~gv~el~~~i~~~~  192 (193)
                         |.|+++++++|.+.+
T Consensus       161 ~~~g~gi~~L~~~l~~~~  178 (370)
T 2elf_A          161 KNPFEGVDELKARINEVA  178 (370)
T ss_dssp             SSTTTTHHHHHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHhhc
Confidence               999999999998654

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.86  E-value=1.8e-21  Score=153.11  Aligned_cols=155  Identities=16%  Similarity=0.126  Sum_probs=100.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC--Ccc--------------------------------ccCCCCCcceeEEEeCC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDE--RLV--------------------------------QHQPTQYPTSEELSIGK   63 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~~   63 (193)
                      +..++|+++|++|+|||||+++|+..  .+.                                ....|.+.....+...+
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~   83 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   83 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence            45689999999999999999999754  111                                12245555566677788


Q ss_pred             EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHH-------HHHHHHHcCCCCCC-CcEEEEEeCCCCCC
Q 029437           64 IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESK-------KELDALLSDEALAN-VPFLVLGNKIDIPY  135 (193)
Q Consensus        64 ~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~-------~~~~~~~~~~~~~~-~pviiv~nK~D~~~  135 (193)
                      ..+.+|||||+..+...+...+..+|++++|+|+++ .+++...       +.+.....    .+ .|+++++||+|+..
T Consensus        84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~----~~~~~iivviNK~Dl~~  158 (435)
T 1jny_A           84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT----MGLDQLIVAVNKMDLTE  158 (435)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH----TTCTTCEEEEECGGGSS
T ss_pred             eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH----cCCCeEEEEEEcccCCC
Confidence            999999999999999888889999999999999988 4555332       22222211    24 46899999999975


Q ss_pred             CC-CH---HHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHH
Q 029437          136 AA-SE---EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGF  185 (193)
Q Consensus       136 ~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~  185 (193)
                      .. +.   +++.++..........        ....++++++||++|.|+.+++
T Consensus       159 ~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~i~iSA~~g~~v~e~~  204 (435)
T 1jny_A          159 PPYDEKRYKEIVDQVSKFMRSYGF--------NTNKVRFVPVVAPSGDNITHKS  204 (435)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHTTC--------CCTTCEEEECBTTTTBTTTBCC
T ss_pred             ccccHHHHHHHHHHHHHHHHHcCC--------CcCCceEEEeecccCccccccc
Confidence            31 11   1222222111100000        0023689999999999997543

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.86  E-value=8.7e-22  Score=150.39  Aligned_cols=130  Identities=20%  Similarity=0.296  Sum_probs=89.4

Q ss_pred             CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECC----------ChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCC
Q 029437           62 GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAY----------DKERFAESKKELDALLSDEALANVPFLVLGNKI  131 (193)
Q Consensus        62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~  131 (193)
                      ..+.+.+|||+|+++++..+..++++++++|+|+|++          +.+++++...++..+.+.....++|+++++||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            3578999999999999999999999999999999998          788999999999999876556789999999999


Q ss_pred             CCCCC----CC-------------------HHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhh
Q 029437          132 DIPYA----AS-------------------EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWL  188 (193)
Q Consensus       132 D~~~~----~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i  188 (193)
                      |+...    ..                   .++..+.....+......+. ..+.......+++|||+++.||+++|+++
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~-~~~~~~~~~~~~eTSA~d~~nV~~vF~~v  339 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNT-APDRVDRVFKIYRTTALDQKLVKKTFKLV  339 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTC-CTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccc-cccccCcceEEEEEEeecchhHHHHHHHH
Confidence            98511    10                   01110000000000000000 00000123567899999999999999998


Q ss_pred             hhhc
Q 029437          189 SQYI  192 (193)
Q Consensus       189 ~~~~  192 (193)
                      .+.+
T Consensus       340 ~~~I  343 (354)
T 2xtz_A          340 DETL  343 (354)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.86  E-value=3.4e-21  Score=150.03  Aligned_cols=161  Identities=17%  Similarity=0.108  Sum_probs=105.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC-------cc------------ccCCCCCcceeEEEeCCEEEEEEEcCChhhhHh
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER-------LV------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQIARR   79 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~-------~~------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~   79 (193)
                      .+++|+++|++++|||||+++|.+..       +.            ....|.+.....+...+..+.+|||||+..+..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            46899999999999999999998631       11            011233333334555678999999999999988


Q ss_pred             hHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCCCCC-HHHHHHhhCCCccccCCCc
Q 029437           80 VWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGKGK  157 (193)
Q Consensus        80 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~  157 (193)
                      .+...+..+|++++|+|+++.... +..+.+.....    .++| +++++||+|+..... .+.+.++.........   
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~-qt~e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~---  153 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMP-QTREHLLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFG---  153 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCH-HHHHHHHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTT---
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCH-HHHHHHHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcC---
Confidence            888888999999999999885332 22333333222    3778 689999999974211 1111111110000000   


Q ss_pred             cccCCCCCcceEEEEeeeecCCC----------hhhHHHhhhhhc
Q 029437          158 VNLADSNVRPLEVFMCSIVRKMG----------YGDGFKWLSQYI  192 (193)
Q Consensus       158 ~~~~~~~~~~~~~~~~Sa~~g~g----------v~el~~~i~~~~  192 (193)
                        +.   ....+++++||++|.|          +++++++|.+.+
T Consensus       154 --~~---~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          154 --YK---GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             --SC---TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             --CC---cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence              00   0235789999999774          889999987754

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.85  E-value=1.6e-21  Score=157.86  Aligned_cols=163  Identities=20%  Similarity=0.187  Sum_probs=105.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccCC---CCCcceeEEE------------------eCCEEEEEEEcCChhhh
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQP---TQYPTSEELS------------------IGKIKFKAFDLGGHQIA   77 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~---t~~~~~~~~~------------------~~~~~~~~~D~~G~~~~   77 (193)
                      +.++|+++|++|+|||||++++.+..+....+   |.......+.                  +....+++|||||+..+
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            45799999999999999999998765443222   2221111111                  11236999999999999


Q ss_pred             HhhHHhhcccCCEEEEEEECCC---hhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH--------------H
Q 029437           78 RRVWKDYYAKVDAVVYLVDAYD---KERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE--------------E  140 (193)
Q Consensus        78 ~~~~~~~~~~~d~vl~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~--------------~  140 (193)
                      ..++...++.+|++++|+|+++   +++++.+.    .+..    .++|+++++||+|+.+....              +
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~  155 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI  155 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH----cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence            8887778889999999999998   55554332    2211    47899999999999743211              1


Q ss_pred             H-----------HHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          141 E-----------LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       141 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                      +           +.+.+....+.... ...+. ......+++++||++|.|+++++++|...
T Consensus       156 ~v~~~~~e~i~ei~~~L~e~gl~~e~-~~~l~-~~~~~vpvv~vSA~tG~GI~eLl~~I~~~  215 (594)
T 1g7s_A          156 QVQQKLDTKVYELVGKLHEEGFESER-FDRVT-DFASQVSIIPISAITGEGIPELLTMLMGL  215 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEE-GGGCS-CTTTEEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcchHH-HHHHH-hccCcceEEEEeccCCCCchhHHHHHHhh
Confidence            1           11111111100000 00011 11245789999999999999999999764

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.85  E-value=9.5e-21  Score=149.05  Aligned_cols=157  Identities=18%  Similarity=0.079  Sum_probs=101.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCc---cc---------------------------------cCCCCCcceeEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERL---VQ---------------------------------HQPTQYPTSEELS   60 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~---~~---------------------------------~~~t~~~~~~~~~   60 (193)
                      .+..++|+++|++|+|||||+++|++...   ..                                 ...|.......+.
T Consensus        21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~  100 (434)
T 1zun_B           21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS  100 (434)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence            34568999999999999999999975431   00                                 0112333344456


Q ss_pred             eCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC--
Q 029437           61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS--  138 (193)
Q Consensus        61 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~--  138 (193)
                      ..+..+.+|||||+..+...+...+..+|++++|+|+++... .+..+++......   ...|+++++||+|+.....  
T Consensus       101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~  176 (434)
T 1zun_B          101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL---GIKHIVVAINKMDLNGFDERV  176 (434)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHH
T ss_pred             cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHH
Confidence            677899999999999998888888899999999999988642 2233333322221   1236999999999975321  


Q ss_pred             HHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHH
Q 029437          139 EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGF  185 (193)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~  185 (193)
                      .+++.++..... . ...      ......+++++||++|.|+++++
T Consensus       177 ~~~i~~~~~~~~-~-~~g------~~~~~~~~i~vSA~~g~gi~~~~  215 (434)
T 1zun_B          177 FESIKADYLKFA-E-GIA------FKPTTMAFVPMSALKGDNVVNKS  215 (434)
T ss_dssp             HHHHHHHHHHHH-H-TTT------CCCSEEEEEECCTTTCTTTSSCC
T ss_pred             HHHHHHHHHHHH-H-HhC------CCccCceEEEEeccCCCCccccc
Confidence            111222221100 0 000      00134789999999999998843

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.85  E-value=1e-20  Score=149.61  Aligned_cols=157  Identities=13%  Similarity=0.041  Sum_probs=105.3

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCC--cc--------------------------------ccCCCCCcceeEEEe
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDER--LV--------------------------------QHQPTQYPTSEELSI   61 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~   61 (193)
                      ..+..++|+++|++++|||||+++|++..  +.                                ....|.+.....+..
T Consensus         3 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~   82 (458)
T 1f60_A            3 KEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET   82 (458)
T ss_dssp             CCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC
T ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec
Confidence            34567999999999999999999997531  10                                123466666677788


Q ss_pred             CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh---hHH---HHHHHHHHHHcCCCCCCCc-EEEEEeCCCCC
Q 029437           62 GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE---RFA---ESKKELDALLSDEALANVP-FLVLGNKIDIP  134 (193)
Q Consensus        62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~  134 (193)
                      .+..+.+|||||+..+...+...+..+|++++|+|+++..   +|+   +..+.+.....    .++| +++++||+|+.
T Consensus        83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~  158 (458)
T 1f60_A           83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSV  158 (458)
T ss_dssp             SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGG
T ss_pred             CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEccccc
Confidence            8899999999999999988888899999999999998763   121   23333322211    3565 99999999997


Q ss_pred             CCCC--HHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhH
Q 029437          135 YAAS--EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDG  184 (193)
Q Consensus       135 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el  184 (193)
                      ....  .+++.+++..........        ...++++++||++|.|+.++
T Consensus       159 ~~~~~~~~~i~~~~~~~l~~~g~~--------~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          159 KWDESRFQEIVKETSNFIKKVGYN--------PKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCC--------GGGCCEEECCTTTCBTTTBC
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCC--------ccCceEEEeecccCcCcccc
Confidence            3211  112222221100000000        02357899999999999754

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.84  E-value=9.7e-21  Score=146.27  Aligned_cols=77  Identities=23%  Similarity=0.551  Sum_probs=69.7

Q ss_pred             EEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCC----------hhhHHHHHHHHHHHHcCCCCCCCcEEEE
Q 029437           58 ELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYD----------KERFAESKKELDALLSDEALANVPFLVL  127 (193)
Q Consensus        58 ~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~pviiv  127 (193)
                      .+.++++.+.+|||+|+++++..+..++++++++|+|+|+++          .+++.+...|+..+.+.....++|++++
T Consensus       211 ~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLv  290 (402)
T 1azs_C          211 KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF  290 (402)
T ss_dssp             EEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEE
T ss_pred             EeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEE
Confidence            345567889999999999999999999999999999999999          8899999999999987666678999999


Q ss_pred             EeCCCCC
Q 029437          128 GNKIDIP  134 (193)
Q Consensus       128 ~nK~D~~  134 (193)
                      +||+|+.
T Consensus       291 gNK~DL~  297 (402)
T 1azs_C          291 LNKQDLL  297 (402)
T ss_dssp             EECHHHH
T ss_pred             EEChhhh
Confidence            9999984

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.84  E-value=1.4e-20  Score=137.06  Aligned_cols=118  Identities=12%  Similarity=0.075  Sum_probs=80.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-----CCCCCcceeEEEeCCEEEEEEEcCCh-----------hhhHhh
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-----QPTQYPTSEELSIGKIKFKAFDLGGH-----------QIARRV   80 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~D~~G~-----------~~~~~~   80 (193)
                      ....++|+|+|++|+|||||++++++..+...     ..|.......+.+.+..+.+|||||.           ..+...
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~  105 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC  105 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence            45679999999999999999999998876432     23455566677888899999999993           344445


Q ss_pred             HHhhcccCCEEEEEEECCChhhH-HHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437           81 WKDYYAKVDAVVYLVDAYDKERF-AESKKELDALLSDEALANVPFLVLGNKIDIPYA  136 (193)
Q Consensus        81 ~~~~~~~~d~vl~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  136 (193)
                      .....+.+|++|+|+|+++.... .....++...+..  ....|+++|+||+|+...
T Consensus       106 ~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~--~~~~~~iiv~nK~D~~~~  160 (239)
T 3lxx_A          106 ILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGE--RARSFMILIFTRKDDLGD  160 (239)
T ss_dssp             HHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHH--HHGGGEEEEEECGGGC--
T ss_pred             HHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhh--hccceEEEEEeCCccCCc
Confidence            55556788999999998754321 1122222222211  124699999999999744

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.84  E-value=3.6e-21  Score=142.98  Aligned_cols=156  Identities=15%  Similarity=0.174  Sum_probs=84.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-c--------CCCCCcceeEEEe--CC--EEEEEEEcCChh-------hhH
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-H--------QPTQYPTSEELSI--GK--IKFKAFDLGGHQ-------IAR   78 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~--------~~t~~~~~~~~~~--~~--~~~~~~D~~G~~-------~~~   78 (193)
                      ..++|+++|.+|+|||||+|++++.+... .        .+|..........  ++  ..+.+|||||..       .+.
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~   86 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ   86 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence            46899999999999999999987665332 1        3455554444433  22  589999999962       222


Q ss_pred             hhH-------Hhhcc-------------cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC
Q 029437           79 RVW-------KDYYA-------------KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS  138 (193)
Q Consensus        79 ~~~-------~~~~~-------------~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~  138 (193)
                      .+.       ..++.             ++|+++++++.+...-......++..+ ..    ++|+++|+||+|+.....
T Consensus        87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l-~~----~~pvi~V~nK~D~~~~~e  161 (274)
T 3t5d_A           87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-HE----KVNIIPLIAKADTLTPEE  161 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH-TT----TSCEEEEESSGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH-hc----cCCEEEEEeccCCCCHHH
Confidence            222       22222             378999999776532112222333333 22    799999999999974322


Q ss_pred             HHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          139 EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .....+.+.....             ...++++.+||+++.|+++++++|.+.+
T Consensus       162 ~~~~~~~i~~~l~-------------~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          162 CQQFKKQIMKEIQ-------------EHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHHH-------------HTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHHH-------------HcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            2222221111110             0224567899999999999999998754

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.83  E-value=2.4e-20  Score=147.82  Aligned_cols=157  Identities=20%  Similarity=0.168  Sum_probs=90.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC--Ccc--------------------------------ccCCCCCcceeEEEeCC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDE--RLV--------------------------------QHQPTQYPTSEELSIGK   63 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~~   63 (193)
                      +..++|+++|++++|||||+++|+..  .+.                                ....|++.....+..++
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            56789999999999999999998641  110                                12235555555677778


Q ss_pred             EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh---hHH---HHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCCC
Q 029437           64 IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE---RFA---ESKKELDALLSDEALANVP-FLVLGNKIDIPYA  136 (193)
Q Consensus        64 ~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~  136 (193)
                      ..+.+|||||+..|...+...+..+|++|+|+|+++..   +|+   +..+.+....    ..++| +++++||+|+...
T Consensus       121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~----~~~vp~iivviNK~Dl~~~  196 (467)
T 1r5b_A          121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR----TQGINHLVVVINKMDEPSV  196 (467)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH----HTTCSSEEEEEECTTSTTC
T ss_pred             eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH----HcCCCEEEEEEECccCCCc
Confidence            99999999999999888888889999999999998862   221   2222222221    13677 9999999999642


Q ss_pred             C-CHH---HHHHhhCCCcccc-CCCccccCCCCCcceEEEEeeeecCCChhhHH
Q 029437          137 A-SEE---ELRYHLGLSNFTT-GKGKVNLADSNVRPLEVFMCSIVRKMGYGDGF  185 (193)
Q Consensus       137 ~-~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~  185 (193)
                      . +.+   ++.++........ ....       ...++++++||++|.|+.+++
T Consensus       197 ~~~~~~~~~i~~e~~~~l~~~~g~~~-------~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          197 QWSEERYKECVDKLSMFLRRVAGYNS-------KTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHCCCH-------HHHEEEEECBTTTTBTTSSCC
T ss_pred             cccHHHHHHHHHHHHHHHHHhcCCCc-------cCCceEEeccccccccccccc
Confidence            2 221   1111111000000 0000       024789999999999998765

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.82  E-value=9.7e-20  Score=154.46  Aligned_cols=163  Identities=17%  Similarity=0.087  Sum_probs=106.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC-------cc------------ccCCCCCcceeEEEeCCEEEEEEEcCChhhh
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDER-------LV------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQIA   77 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~-------~~------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~   77 (193)
                      .+..++|+++|++++|||||+++|.+..       +.            ....|.......+...+..+.+|||||+..+
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            4677999999999999999999997631       10            0112333334455667789999999999999


Q ss_pred             HhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCCCCC-HHHHHHhhCCCccccCC
Q 029437           78 RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGK  155 (193)
Q Consensus        78 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~  155 (193)
                      ...+...+..+|++|+|+|+++.... +..+++..+..    .++| +|+++||+|+..... .+++.++..........
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~  447 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF  447 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence            88888889999999999999885322 23333333321    3678 789999999974211 11111111100000000


Q ss_pred             CccccCCCCCcceEEEEeeeecC--------CChhhHHHhhhhhc
Q 029437          156 GKVNLADSNVRPLEVFMCSIVRK--------MGYGDGFKWLSQYI  192 (193)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~Sa~~g--------~gv~el~~~i~~~~  192 (193)
                              ....++++++||++|        .|+++++++|.+.+
T Consensus       448 --------~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          448 --------PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             --------CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             --------cccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence                    002367999999999        57999999988754

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.82  E-value=5.3e-20  Score=147.51  Aligned_cols=151  Identities=17%  Similarity=0.135  Sum_probs=105.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC--cc-----------------------ccCCCCCcceeEEEeCCEEEEEEEcC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDER--LV-----------------------QHQPTQYPTSEELSIGKIKFKAFDLG   72 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~D~~   72 (193)
                      .+..+|+++|++|+|||||+++++...  ..                       ....|.......+.+.+..+++||||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP   90 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence            345799999999999999999998531  10                       01123444556778889999999999


Q ss_pred             ChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---HHHHHHhhCCC
Q 029437           73 GHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---EEELRYHLGLS  149 (193)
Q Consensus        73 G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~~~~~  149 (193)
                      |+..+......++..+|++|+|+|+++.... .....+... .   ..++|+++++||+|+.....   .+++.+.++..
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~-~---~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~  165 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVT-R---LRDTPILTFMNKLDRDIRDPMELLDEVENELKIG  165 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHH-T---TTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCE
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHH-H---HcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCC
Confidence            9999888788889999999999999876332 223333333 2   24889999999999976543   33455555544


Q ss_pred             ccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhh
Q 029437          150 NFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWL  188 (193)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i  188 (193)
                      .               ....+..+|++++.|+.++++.+
T Consensus       166 ~---------------~~~~~pi~sa~~~~Gv~dl~~~~  189 (529)
T 2h5e_A          166 C---------------APITWPIGCGKLFKGVYHLYKDE  189 (529)
T ss_dssp             E---------------EESEEEESCGGGCCEEEETTTTE
T ss_pred             c---------------cceecceecccCcceeeehhhhh
Confidence            3               12234447888888887776543

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.81  E-value=4.9e-19  Score=146.09  Aligned_cols=114  Identities=16%  Similarity=0.065  Sum_probs=86.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC--cc-------------------ccCCCCCcceeEEEeCCEEEEEEEcCChhh
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDER--LV-------------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQI   76 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~   76 (193)
                      ....+|+|+|++|+|||||++++....  +.                   ...+|.......+.+.+..+++|||||+..
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d   89 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD   89 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence            456899999999999999999997311  10                   123456666777788899999999999999


Q ss_pred             hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437           77 ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA  136 (193)
Q Consensus        77 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  136 (193)
                      +.......+..+|++++|+|+++..+.+... .|.....    .++|+++++||+|+...
T Consensus        90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~-~~~~~~~----~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSET-VWRQAEK----YKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             CHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHH----TTCCEEEEEECTTSTTC
T ss_pred             hHHHHHHHHHHCCEEEEEEECCCCcchhhHH-HHHHHHH----cCCCEEEEEECCCcccC
Confidence            9888888899999999999999876654443 3343433    38999999999999754

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.81  E-value=5.7e-21  Score=155.05  Aligned_cols=159  Identities=16%  Similarity=0.092  Sum_probs=86.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc----------------------------------ccCCCCCcceeEEEeC
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV----------------------------------QHQPTQYPTSEELSIG   62 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~----------------------------------~~~~t~~~~~~~~~~~   62 (193)
                      .+..++|+++|++|+|||||+++|+...-.                                  ....|.......+..+
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            456789999999999999999999532100                                  1122444455556666


Q ss_pred             CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh---hH---HHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCC
Q 029437           63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE---RF---AESKKELDALLSDEALANVP-FLVLGNKIDIPY  135 (193)
Q Consensus        63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~  135 (193)
                      +..+.+|||||+..+...+...+..+|++|+|+|++++.   ++   .+..+.+.....    .++| +|+++||+|+..
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl~~  329 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDLMS  329 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGGGT
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEecccccc
Confidence            789999999999988777777788999999999997531   11   111222222211    2555 999999999974


Q ss_pred             CC--CHH----HHHHhh-CCCccccCCCccccCCCCCcceEEEEeeeecCCChh--------------hHHHhhhhh
Q 029437          136 AA--SEE----ELRYHL-GLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYG--------------DGFKWLSQY  191 (193)
Q Consensus       136 ~~--~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~--------------el~~~i~~~  191 (193)
                      ..  ...    ++...+ ....            .....++++++||++|.|+.              .|++.|...
T Consensus       330 ~~~~~~~~i~~el~~~l~~~~g------------~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~  394 (592)
T 3mca_A          330 WSEDRFQEIKNIVSDFLIKMVG------------FKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQL  394 (592)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTSC------------CCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTS
T ss_pred             ccHHHHHHHHHHHHHHHHHhhC------------CCccceEEEEEecccCcccccccccccccccchHHHHHHHHhh
Confidence            21  111    222222 1000            00134689999999999998              688877654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.81  E-value=2e-19  Score=128.27  Aligned_cols=154  Identities=20%  Similarity=0.233  Sum_probs=94.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcce--eEEEeCCEEEEEEEcCChh----------hhHhhHHhh
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQYPTS--EELSIGKIKFKAFDLGGHQ----------IARRVWKDY   84 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~~~~~~~D~~G~~----------~~~~~~~~~   84 (193)
                      ....+|+++|++|||||||++++.+..+. ...++.+...  ..+.+.+ .+.+|||||..          .++.....+
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~  102 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEY  102 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHH
Confidence            45679999999999999999999987732 2234443322  2233333 57899999973          233333334


Q ss_pred             c---ccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH----HHHHHhhCCCccccCCCc
Q 029437           85 Y---AKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE----EELRYHLGLSNFTTGKGK  157 (193)
Q Consensus        85 ~---~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~  157 (193)
                      +   ..++++++++|+.++.+...  ..+..++.   ..+.|+++++||+|+......    ..+...+....       
T Consensus       103 ~~~~~~~~~~~~v~d~~~~~~~~~--~~~~~~~~---~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~-------  170 (210)
T 1pui_A          103 LEKRQSLQGLVVLMDIRHPLKDLD--QQMIEWAV---DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFN-------  170 (210)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHH---HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGC-------
T ss_pred             HHhhhcccEEEEEEECCCCCchhH--HHHHHHHH---HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcC-------
Confidence            3   46789999999987644321  11122221   147899999999998742211    11222221110       


Q ss_pred             cccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          158 VNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       158 ~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                              .....+++||+++.|+++++++|.+.+
T Consensus       171 --------~~~~~~~~Sal~~~~~~~l~~~l~~~~  197 (210)
T 1pui_A          171 --------GDVQVETFSSLKKQGVDKLRQKLDTWF  197 (210)
T ss_dssp             --------SCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             --------CCCceEEEeecCCCCHHHHHHHHHHHH
Confidence                    235788999999999999999998754

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.81  E-value=2.7e-19  Score=135.24  Aligned_cols=174  Identities=16%  Similarity=0.175  Sum_probs=103.2

Q ss_pred             hHHHHHHHHHhhCCC-CCccEEEEEcCCCCCHHHHHHHHhcCCccccCC---CCCc----c-------------------
Q 029437            3 LLDWFYGVLASLGLW-QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQP---TQYP----T-------------------   55 (193)
Q Consensus         3 ~~~~~~~~~~~~~~~-~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~---t~~~----~-------------------   55 (193)
                      +++-+++.+...+.. ...++|+|+|++|||||||+|++++..+.+...   |..+    .                   
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~   85 (315)
T 1jwy_B            6 VINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFL   85 (315)
T ss_dssp             HHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEES
T ss_pred             HHHHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhh
Confidence            355566666555543 466899999999999999999999887622110   1110    0                   


Q ss_pred             ----------------------------------eeEE--Ee-CCEEEEEEEcCChhh-------------hHhhHHhhc
Q 029437           56 ----------------------------------SEEL--SI-GKIKFKAFDLGGHQI-------------ARRVWKDYY   85 (193)
Q Consensus        56 ----------------------------------~~~~--~~-~~~~~~~~D~~G~~~-------------~~~~~~~~~   85 (193)
                                                        ...+  .. ....+.+|||||...             +......++
T Consensus        86 ~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~  165 (315)
T 1jwy_B           86 HKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYI  165 (315)
T ss_dssp             SSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHH
T ss_pred             cccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHH
Confidence                                              0001  11 235799999999643             445666778


Q ss_pred             ccCCEEEEEEECCChhhH-HHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCC
Q 029437           86 AKVDAVVYLVDAYDKERF-AESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSN  164 (193)
Q Consensus        86 ~~~d~vl~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (193)
                      ..+|++++|+|..+.... ......+..+ ..   .+.|+++|+||+|+.....  +..+.+....          ....
T Consensus       166 ~~~d~iilvvd~~~~~~~~~~~~~i~~~~-~~---~~~~~i~v~NK~Dl~~~~~--~~~~~~~~~~----------~~~~  229 (315)
T 1jwy_B          166 KKQNAIIVAVTPANTDLANSDALQLAKEV-DP---EGKRTIGVITKLDLMDKGT--DAMEVLTGRV----------IPLT  229 (315)
T ss_dssp             HSTTEEEEEEEESSSCSTTCSHHHHHHHH-CS---SCSSEEEEEECTTSSCSSC--CCHHHHTTSS----------SCCT
T ss_pred             cCCCeEEEEEEecCcchhhhHHHHHHHHh-CC---CCCcEEEEEcCcccCCcch--HHHHHHhCCC----------ccCC
Confidence            899999999997433211 1111222222 22   4789999999999974432  1111111110          0000


Q ss_pred             CcceEEEEeeeec---CCChhhHHHhhhhhc
Q 029437          165 VRPLEVFMCSIVR---KMGYGDGFKWLSQYI  192 (193)
Q Consensus       165 ~~~~~~~~~Sa~~---g~gv~el~~~i~~~~  192 (193)
                      ....++..+|+.+   +.|+.++++.+.+.+
T Consensus       230 ~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~  260 (315)
T 1jwy_B          230 LGFIGVINRSQEDIIAKKSIRESLKSEILYF  260 (315)
T ss_dssp             TCEEECCCCCHHHHSSSCCHHHHHHHHHHHH
T ss_pred             CCeEEEecCChhhhccCCCHHHHHHHHHHHH
Confidence            1234556667777   889999998876543

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.80  E-value=9.3e-19  Score=143.99  Aligned_cols=112  Identities=18%  Similarity=0.122  Sum_probs=85.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc---------------------ccCCCCCcceeEEEeCCEEEEEEEcCChhh
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLV---------------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQI   76 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~   76 (193)
                      ....+|+|+|++|+|||||++++.+....                     ....+.......+.+....+++|||||+..
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            45578999999999999999999843221                     012244445566777889999999999999


Q ss_pred             hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437           77 ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP  134 (193)
Q Consensus        77 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  134 (193)
                      +.......+..+|++++|+|+++.... ....++.....    .++|+++++||+|+.
T Consensus        87 f~~~~~~~l~~ad~~ilVvD~~~g~~~-qt~~~~~~~~~----~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           87 FVGEIRGALEAADAALVAVSAEAGVQV-GTERAWTVAER----LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCH-HHHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred             hHHHHHHHHhhcCcEEEEEcCCcccch-hHHHHHHHHHH----ccCCEEEEecCCchh
Confidence            988888889999999999998775432 23344444433    378999999999997

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.80  E-value=4.1e-19  Score=131.03  Aligned_cols=125  Identities=17%  Similarity=0.138  Sum_probs=83.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccC----CCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhc-------
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ----PTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYY-------   85 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~-------   85 (193)
                      .++.++|+++|++|+|||||++++++..+....    .|.......+.+++..+.+|||||+..+......++       
T Consensus        33 ~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           33 DMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             TCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            357899999999999999999999988753322    245556667788899999999999865532221111       


Q ss_pred             --ccCCEEEEEEECCChhhHHHHH-HHHHHHHcCC-CCCCCcEEEEEeCCCCC--CCCCHHHH
Q 029437           86 --AKVDAVVYLVDAYDKERFAESK-KELDALLSDE-ALANVPFLVLGNKIDIP--YAASEEEL  142 (193)
Q Consensus        86 --~~~d~vl~v~d~~~~~~~~~~~-~~~~~~~~~~-~~~~~pviiv~nK~D~~--~~~~~~~~  142 (193)
                        ..+|++++|++++... +.... .++..+.... .....|+++++||+|+.  +....++.
T Consensus       113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~  174 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETF  174 (262)
T ss_dssp             TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHH
T ss_pred             hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHH
Confidence              2789999999986543 22222 3333332111 11135999999999996  33444443

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.79  E-value=6.6e-19  Score=145.41  Aligned_cols=167  Identities=19%  Similarity=0.241  Sum_probs=102.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc--CCCCC-cc--------eeEEEe-------------------------
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH--QPTQY-PT--------SEELSI-------------------------   61 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~t~~-~~--------~~~~~~-------------------------   61 (193)
                      ...++|+|+|.+|+|||||+|+|.+.+..+.  .|+.. +.        .....+                         
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            4678999999999999999999998875442  22221 00        001110                         


Q ss_pred             ---------------------CC----EEEEEEEcCChhhh---HhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHH
Q 029437           62 ---------------------GK----IKFKAFDLGGHQIA---RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDAL  113 (193)
Q Consensus        62 ---------------------~~----~~~~~~D~~G~~~~---~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~  113 (193)
                                           +.    ..+.+|||||....   ......+++.+|++|+|+|++++.+..... .+...
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~-~l~~~  225 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERR-YLENY  225 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHH-HHHHH
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHH-HHHHH
Confidence                                 00    35899999997653   345556778999999999998876654443 33333


Q ss_pred             HcCCCCCCCcEEEEEeCCCCCCCC--CHH---H-------HHHhhCCCccccCCCccccCCCCCcceEEEEeeee-----
Q 029437          114 LSDEALANVPFLVLGNKIDIPYAA--SEE---E-------LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIV-----  176 (193)
Q Consensus       114 ~~~~~~~~~pviiv~nK~D~~~~~--~~~---~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-----  176 (193)
                      +..   .+.|+++|+||+|+....  +.+   +       +........ .....   ..........++++||+     
T Consensus       226 l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l-~~~~~---~~g~~~~~~~v~~vSAk~al~~  298 (695)
T 2j69_A          226 IKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANL-AEYCT---VEGQNIYDERVFELSSIQALRR  298 (695)
T ss_dssp             TTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHH-GGGGB---SSSCBCGGGTEEECCHHHHHHH
T ss_pred             HHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHH-HHhhc---ccccccCCCcEEEEeChHHHHh
Confidence            322   367899999999986321  111   1       111110000 00000   00000022458999999     


Q ss_pred             ---------cCCChhhHHHhhhhhc
Q 029437          177 ---------RKMGYGDGFKWLSQYI  192 (193)
Q Consensus       177 ---------~g~gv~el~~~i~~~~  192 (193)
                               +|.|+++++++|.+.+
T Consensus       299 ~~~~~~~~~~~~Gi~~L~~~L~~~l  323 (695)
T 2j69_A          299 RLKNPQADLDGTGFPKFMDSLNTFL  323 (695)
T ss_dssp             HHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred             hccCchhhhhccCHHHHHHHHHHHH
Confidence                     9999999999987654

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.77  E-value=7.6e-18  Score=139.09  Aligned_cols=114  Identities=20%  Similarity=0.122  Sum_probs=86.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc--CCcc-------------------ccCCCCCcceeEEEeCCEEEEEEEcCChhh
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKD--ERLV-------------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQI   76 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~--~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~   76 (193)
                      ....+|+|+|++|+|||||+++++.  ..+.                   ....|.......+.+.+..+++|||||+..
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d   87 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD   87 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence            4567999999999999999999984  1111                   112355555667788889999999999998


Q ss_pred             hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437           77 ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA  136 (193)
Q Consensus        77 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  136 (193)
                      +.......+..+|++|+|+|+++..+.+.. ..|.....    .++|+++++||+|+...
T Consensus        88 f~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~~~~~----~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           88 FTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWRQATT----YGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             CCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHHHHH----TTCCEEEEEECTTSTTC
T ss_pred             hHHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHHHHHH----cCCCEEEEEECCCcccc
Confidence            888888888999999999999887554443 34444433    38899999999999764

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.77  E-value=1.1e-17  Score=138.40  Aligned_cols=115  Identities=17%  Similarity=0.004  Sum_probs=85.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC--cc-------------------ccCCCCCcceeEEEeCC-------EEEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDER--LV-------------------QHQPTQYPTSEELSIGK-------IKFKA   68 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~--~~-------------------~~~~t~~~~~~~~~~~~-------~~~~~   68 (193)
                      ..+..+|+|+|++|+|||||++++....  +.                   ....|.......+.+.+       ..+++
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI   86 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence            3456799999999999999999996421  11                   01123344445566665       89999


Q ss_pred             EEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437           69 FDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA  136 (193)
Q Consensus        69 ~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  136 (193)
                      |||||+..+.......+..+|++|+|+|+++....+. ...|.....    .++|+++++||+|+...
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt-~~~~~~~~~----~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQS-ETVWRQANK----YKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCEEEEEeCCCcccc
Confidence            9999999998888888899999999999988654333 334443322    37899999999999754

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.76  E-value=3.2e-18  Score=131.39  Aligned_cols=156  Identities=14%  Similarity=0.102  Sum_probs=95.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCC---CCCcc---------------------------------------
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQP---TQYPT---------------------------------------   55 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~---t~~~~---------------------------------------   55 (193)
                      ...++|+|+|.+|||||||++++.+.++.+...   |..+.                                       
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            356799999999999999999999988642110   11111                                       


Q ss_pred             ------------eeEEEeC-CEEEEEEEcCChh-------------hhHhhHHhhcccCC-EEEEEEECCChhhHHHHHH
Q 029437           56 ------------SEELSIG-KIKFKAFDLGGHQ-------------IARRVWKDYYAKVD-AVVYLVDAYDKERFAESKK  108 (193)
Q Consensus        56 ------------~~~~~~~-~~~~~~~D~~G~~-------------~~~~~~~~~~~~~d-~vl~v~d~~~~~~~~~~~~  108 (193)
                                  ...+... ...+.+|||||..             .+..+...++...+ ++++|.+++....-.....
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~  188 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  188 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence                        0011111 3679999999952             34556666666554 5566777754322122222


Q ss_pred             HHHHHHcCCCCCCCcEEEEEeCCCCCCCCC-HHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHh
Q 029437          109 ELDALLSDEALANVPFLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKW  187 (193)
Q Consensus       109 ~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~  187 (193)
                      ++..+ .   ..+.|+++|+||+|+..... ..+..+   ....          ........++++||++|.|+++++++
T Consensus       189 i~~~~-~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~---~~~~----------~l~~~~~~v~~~SA~~~~~i~~l~~~  251 (353)
T 2x2e_A          189 VAKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLE---NKLL----------PLRRGYIGVVNRSQKDIDGKKDITAA  251 (353)
T ss_dssp             HHHHH-C---TTCTTEEEEEECGGGSCTTCCCHHHHT---TCSS----------CCTTCEEECCCCCHHHHHTTCCHHHH
T ss_pred             HHHHh-C---cCCCceEEEeccccccCcchhHHHHHh---CCcc----------cccCCceEEEeCCcccccccccHHHH
Confidence            33333 2   24789999999999974322 122211   1110          00113357889999999999999998


Q ss_pred             hhh
Q 029437          188 LSQ  190 (193)
Q Consensus       188 i~~  190 (193)
                      |.+
T Consensus       252 l~~  254 (353)
T 2x2e_A          252 LAA  254 (353)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            865

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.76  E-value=2.1e-18  Score=134.21  Aligned_cols=154  Identities=21%  Similarity=0.219  Sum_probs=103.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-c--cCCCCCcceeEEEeCC-EEEEEEEcCChhhh-------HhhHHhhcccCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLV-Q--HQPTQYPTSEELSIGK-IKFKAFDLGGHQIA-------RRVWKDYYAKVD   89 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~~-------~~~~~~~~~~~d   89 (193)
                      ..++|+|++|||||||++++++.... .  ...|..++...+...+ ..+.+||+||....       .......+..++
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            45899999999999999999887532 1  1234556666677665 78999999996321       111222346799


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHcCC-CCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437           90 AVVYLVDAYDKERFAESKKELDALLSDE-ALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPL  168 (193)
Q Consensus        90 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (193)
                      .+++++|++ ...+.++..+..+..... .....|.++++||+|+......+++.+.+..                 ...
T Consensus       238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~-----------------~g~  299 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAR-----------------EGL  299 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHT-----------------TTS
T ss_pred             hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHh-----------------cCC
Confidence            999999997 444555555555443211 1236899999999999743111222222211                 124


Q ss_pred             EEEEeeeecCCChhhHHHhhhhhc
Q 029437          169 EVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       169 ~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .++.+||+++.|+++++++|.+.+
T Consensus       300 ~vi~iSA~~g~gi~eL~~~i~~~l  323 (416)
T 1udx_A          300 AVLPVSALTGAGLPALKEALHALV  323 (416)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             eEEEEECCCccCHHHHHHHHHHHH
Confidence            689999999999999999998764

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.76  E-value=6.8e-20  Score=140.83  Aligned_cols=155  Identities=13%  Similarity=0.171  Sum_probs=73.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC-ccccC---------CCCCcceeEE--EeCC--EEEEEEEcCCh-------hh
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDER-LVQHQ---------PTQYPTSEEL--SIGK--IKFKAFDLGGH-------QI   76 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~---------~t~~~~~~~~--~~~~--~~~~~~D~~G~-------~~   76 (193)
                      ...++|+|+|++|+|||||++++.+.. +....         +|........  ...+  ..+++|||||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            456899999999999999999987654 22111         2322222222  2222  47999999998       54


Q ss_pred             hHhhHH-------hhcc-------------cCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437           77 ARRVWK-------DYYA-------------KVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA  136 (193)
Q Consensus        77 ~~~~~~-------~~~~-------------~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  136 (193)
                      +..+..       .++.             ++|+++|+++.. ..++......+...+.    .++|+|+|+||+|+...
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~~  189 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTL  189 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCCH
Confidence            544433       3333             235666666642 2234444433333322    58999999999999743


Q ss_pred             CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          137 ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                      ..............           .  ...++++++||++|.| ++.|.++.+.
T Consensus       190 ~ev~~~k~~i~~~~-----------~--~~~i~~~~~Sa~~~~~-~e~~~~l~~~  230 (361)
T 2qag_A          190 KERERLKKRILDEI-----------E--EHNIKIYHLPDAESDE-DEDFKEQTRL  230 (361)
T ss_dssp             HHHHHHHHHHHHHT-----------T--CC-CCSCCCC----------CHHHHHH
T ss_pred             HHHHHHHHHHHHHH-----------H--HCCCCEEeCCCcCCCc-chhHHHHHHH
Confidence            21111111111000           0  0235678999999998 7666665544

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.76  E-value=4e-17  Score=131.39  Aligned_cols=122  Identities=19%  Similarity=0.168  Sum_probs=90.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC---------------------c----cccCCCCCcceeEEEeCCEEEEEEEcCChh
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER---------------------L----VQHQPTQYPTSEELSIGKIKFKAFDLGGHQ   75 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~---------------------~----~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~   75 (193)
                      =+|+|+|+.++|||||..+|+...                     +    .....|+......+.|+++.++++||||+.
T Consensus        32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv  111 (548)
T 3vqt_A           32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ  111 (548)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred             ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence            389999999999999999984110                     0    012346667788899999999999999999


Q ss_pred             hhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---HHHHHHhhC
Q 029437           76 IARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---EEELRYHLG  147 (193)
Q Consensus        76 ~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~~~  147 (193)
                      .|.......++-+|++|+|+|+.+.-.. +....|+....    .++|+++++||+|...+..   .+++.+.++
T Consensus       112 DF~~Ev~raL~~~DgAvlVvda~~GV~~-qT~~v~~~a~~----~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~  181 (548)
T 3vqt_A          112 DFSEDTYRVLTAVDSALVVIDAAKGVEA-QTRKLMDVCRM----RATPVMTFVNKMDREALHPLDVMADIEQHLQ  181 (548)
T ss_dssp             GCSHHHHHHHHSCSEEEEEEETTTBSCH-HHHHHHHHHHH----TTCCEEEEEECTTSCCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCceEEEeecCCCccc-ccHHHHHHHHH----hCCceEEEEecccchhcchhHhhhhhhhhcC
Confidence            9998888889999999999999886433 33344555544    4899999999999975432   233555554

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.74  E-value=5.5e-19  Score=137.11  Aligned_cols=80  Identities=23%  Similarity=0.177  Sum_probs=47.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-ccC--CCCCcceeEEE---------------------eC---CEEEEEEEcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQ--PTQYPTSEELS---------------------IG---KIKFKAFDLGG   73 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~--~t~~~~~~~~~---------------------~~---~~~~~~~D~~G   73 (193)
                      ++|+++|.||+|||||+|++++.... ...  .|..++.....                     +.   ...+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            48999999999999999999987622 122  24444444321                     12   36899999999


Q ss_pred             hhhh----HhhHH---hhcccCCEEEEEEECCCh
Q 029437           74 HQIA----RRVWK---DYYAKVDAVVYLVDAYDK  100 (193)
Q Consensus        74 ~~~~----~~~~~---~~~~~~d~vl~v~d~~~~  100 (193)
                      ....    +.+..   ..++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            8542    22222   345789999999999774

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.74  E-value=1.7e-17  Score=122.94  Aligned_cols=118  Identities=17%  Similarity=0.150  Sum_probs=79.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCEEEEEEEcCChhhhHh-------hHHhh-
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQIARR-------VWKDY-   84 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------~~~~~-   84 (193)
                      ....++|+++|.+|+|||||++++++..+....+    |.......+...+..+.+|||||...+..       ....+ 
T Consensus        36 ~~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           36 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            3467999999999999999999999887643222    33344455667888999999999855421       11222 


Q ss_pred             -cccCCEEEEEEECCChhhHHHH-HHHHHHHHcCCC-CCCCcEEEEEeCCCCCC
Q 029437           85 -YAKVDAVVYLVDAYDKERFAES-KKELDALLSDEA-LANVPFLVLGNKIDIPY  135 (193)
Q Consensus        85 -~~~~d~vl~v~d~~~~~~~~~~-~~~~~~~~~~~~-~~~~pviiv~nK~D~~~  135 (193)
                       ...+|++++|+|++.. ++... ..++..+..... ....|+++|+||+|+.+
T Consensus       116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~  168 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  168 (270)
T ss_dssp             TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence             2478999999998653 23222 234443322111 11279999999999974

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.73  E-value=7.7e-18  Score=129.60  Aligned_cols=149  Identities=12%  Similarity=0.133  Sum_probs=93.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccCC---CCCc-----------------------------------------
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQP---TQYP-----------------------------------------   54 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~---t~~~-----------------------------------------   54 (193)
                      .-.+|+|+|++|||||||++++.+..+.+...   |..+                                         
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            44599999999999999999999987632211   1000                                         


Q ss_pred             -----------ceeEE--Ee-CCEEEEEEEcCChhhh-------------HhhHHhhcccCCEEEEEEECCChhhH-HHH
Q 029437           55 -----------TSEEL--SI-GKIKFKAFDLGGHQIA-------------RRVWKDYYAKVDAVVYLVDAYDKERF-AES  106 (193)
Q Consensus        55 -----------~~~~~--~~-~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~d~vl~v~d~~~~~~~-~~~  106 (193)
                                 ....+  .. ....+.+|||||...+             ..+...++..+|++++|+|..+.... ...
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~  192 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA  192 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence                       00011  11 1346899999997654             56667788999999999987553322 222


Q ss_pred             HHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC-CHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHH
Q 029437          107 KKELDALLSDEALANVPFLVLGNKIDIPYAA-SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGF  185 (193)
Q Consensus       107 ~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~  185 (193)
                      ..+...    ....+.|+++|+||+|+.... ...+..+.....                ....++++|+.++.++++.+
T Consensus       193 ~~l~~~----~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~~v~~~s~~~i~~~~  252 (360)
T 3t34_A          193 IKISRE----VDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFK----------------LKYPWVGVVNRSQADINKNV  252 (360)
T ss_dssp             HHHHHH----SCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSC----------------CSSCCEEECCCCHHHHHTTC
T ss_pred             HHHHHH----hcccCCCEEEEEeCCccCCCcccHHHHHcCcccc----------------ccCCeEEEEECChHHhccCC
Confidence            222222    233578999999999997432 212222211111                22467889999998887765


Q ss_pred             Hh
Q 029437          186 KW  187 (193)
Q Consensus       186 ~~  187 (193)
                      ..
T Consensus       253 ~~  254 (360)
T 3t34_A          253 DM  254 (360)
T ss_dssp             CH
T ss_pred             CH
Confidence            54

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.72  E-value=5.2e-18  Score=130.25  Aligned_cols=158  Identities=15%  Similarity=0.099  Sum_probs=93.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC------cc--ccCCCC-------------------Cccee------------
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDER------LV--QHQPTQ-------------------YPTSE------------   57 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~------~~--~~~~t~-------------------~~~~~------------   57 (193)
                      .....+|+++|++|+|||||++++...-      ..  ...|..                   .+...            
T Consensus        76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~  155 (355)
T 3p32_A           76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG  155 (355)
T ss_dssp             CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence            3456799999999999999999985321      00  000000                   00000            


Q ss_pred             ----------EEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEE
Q 029437           58 ----------ELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVL  127 (193)
Q Consensus        58 ----------~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv  127 (193)
                                .+...+..+.+|||||.....   ......+|.+++|+|....+..+.+.         ....+.|+++|
T Consensus       156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~~---~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivV  223 (355)
T 3p32_A          156 VTRATRETVVLLEAAGFDVILIETVGVGQSE---VAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVV  223 (355)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECSCSSHH---HHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEE
T ss_pred             hhHHHHHHHHHHhhCCCCEEEEeCCCCCcHH---HHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEE
Confidence                      012246789999999954322   23347899999999987654332111         11235699999


Q ss_pred             EeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          128 GNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       128 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +||+|+............+.........      ....+..+++++||++|.|+++++++|.+.+
T Consensus       224 lNK~Dl~~~~~~~~~~~~l~~~l~~~~~------~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~  282 (355)
T 3p32_A          224 VNKADGEHHKEARLAARELSAAIRLIYP------REALWRPPVLTMSAVEGRGLAELWDTVERHR  282 (355)
T ss_dssp             EECCCGGGHHHHHHHHHHHHHHHHHHST------TCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred             EECCCCcChhHHHHHHHHHHHHHhhccc------cccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence            9999996332222222222110000000      0001235689999999999999999998754

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.69  E-value=7.2e-17  Score=112.94  Aligned_cols=110  Identities=18%  Similarity=0.189  Sum_probs=82.0

Q ss_pred             EcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHH---HHHHcCCC-CCCCcEEEEEeCC-CCCCCCCHHHHHH
Q 029437           70 DLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKEL---DALLSDEA-LANVPFLVLGNKI-DIPYAASEEELRY  144 (193)
Q Consensus        70 D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~pviiv~nK~-D~~~~~~~~~~~~  144 (193)
                      +.+|+.+++.+|..|+.++|++|||+|++|.+.+. ..+.+   ..++.... ..++|++|++||. |++.+.+..++.+
T Consensus       108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e  186 (227)
T 3l82_B          108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAH  186 (227)
T ss_dssp             ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHH
T ss_pred             ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHH
Confidence            34588899999999999999999999999886543 33333   34444432 4689999999995 7888899999999


Q ss_pred             hhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhcC
Q 029437          145 HLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~~  193 (193)
                      .+++..+             .+.+.+..|||++|+|+.|.++||.+.++
T Consensus       187 ~L~L~~l-------------~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          187 ELHLNLL-------------NHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             HTTGGGG-------------CSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             HcCCcCC-------------CCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            9987661             14688999999999999999999998763

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.68  E-value=1.5e-16  Score=121.78  Aligned_cols=152  Identities=16%  Similarity=0.114  Sum_probs=86.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCc--------cccCCCCC-------------------cce--------e------
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERL--------VQHQPTQY-------------------PTS--------E------   57 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~--------~~~~~t~~-------------------~~~--------~------   57 (193)
                      ....|+|+|+||||||||+|++.+...        ....|+..                   ...        .      
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t  152 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT  152 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence            468899999999999999999985210        00111100                   000        0      


Q ss_pred             --------EEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q 029437           58 --------ELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGN  129 (193)
Q Consensus        58 --------~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~n  129 (193)
                              .+...+..+.++||+|.....   ......+|.+++|+|++++...+.+..   .+      ...|.++++|
T Consensus       153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlN  220 (349)
T 2www_A          153 RTTNEAILLCEGAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVT  220 (349)
T ss_dssp             TTHHHHHHHHHHTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC---------------------CCSCSEEEEC
T ss_pred             HHHHHHHHhhccCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEe
Confidence                    011345688999999964221   233568999999999977643221111   11      2458899999


Q ss_pred             CCCCCCCCCH----HHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          130 KIDIPYAASE----EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       130 K~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      |+|+......    .++...+....          +.......+++.+||++|.|+++++++|.+.+
T Consensus       221 K~Dl~~~~~~~~~~~~l~~~l~~~~----------~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~  277 (349)
T 2www_A          221 KSDGDLIVPARRIQAEYVSALKLLR----------KRSQVWKPKVIRISARSGEGISEMWDKMKDFQ  277 (349)
T ss_dssp             CCSGGGHHHHHHHHHHHHHHHTTCC---------------CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             eecCCCchhHHHHHHHHHHHHHhcC----------ccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence            9999632111    11222222111          00000234788999999999999999998753

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.66  E-value=1.6e-16  Score=127.98  Aligned_cols=114  Identities=21%  Similarity=0.216  Sum_probs=77.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc----ccCCCCCcceeEE-----------------------------------
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLV----QHQPTQYPTSEEL-----------------------------------   59 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~----~~~~t~~~~~~~~-----------------------------------   59 (193)
                      ...+|+|+|.+|+|||||+|++++..+.    ...|+........                                   
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~  143 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF  143 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence            4579999999999999999999998763    2222221100000                                   


Q ss_pred             ---EeCC---EEEEEEEcCChhh-----------hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCC
Q 029437           60 ---SIGK---IKFKAFDLGGHQI-----------ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANV  122 (193)
Q Consensus        60 ---~~~~---~~~~~~D~~G~~~-----------~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (193)
                         ....   ..+.+|||||...           +......++..+|++++|+|+++.........++..+ .   ..+.
T Consensus       144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l-~---~~~~  219 (550)
T 2qpt_A          144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGAL-R---GHED  219 (550)
T ss_dssp             EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHT-T---TCGG
T ss_pred             eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHH-H---hcCC
Confidence               0000   2589999999764           4456667788999999999998753334444444443 2   2368


Q ss_pred             cEEEEEeCCCCCCC
Q 029437          123 PFLVLGNKIDIPYA  136 (193)
Q Consensus       123 pviiv~nK~D~~~~  136 (193)
                      |+++|+||+|+...
T Consensus       220 pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          220 KIRVVLNKADMVET  233 (550)
T ss_dssp             GEEEEEECGGGSCH
T ss_pred             CEEEEEECCCccCH
Confidence            99999999999753

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.66  E-value=3.3e-16  Score=131.80  Aligned_cols=123  Identities=17%  Similarity=0.141  Sum_probs=90.2

Q ss_pred             HHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCC------------cc-------ccCCCCCcceeEEEeC--
Q 029437            4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDER------------LV-------QHQPTQYPTSEELSIG--   62 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~------------~~-------~~~~t~~~~~~~~~~~--   62 (193)
                      .++++..+.   ..+...+|+|+|++|+|||||+++++...            +.       ....|+......+.+.  
T Consensus         6 ~~~~~~~m~---~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~   82 (842)
T 1n0u_A            6 VDQMRSLMD---KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMS   82 (842)
T ss_dssp             HHHHHHHHH---CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECC
T ss_pred             HHHHHHHhh---CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccc
Confidence            455665543   23455799999999999999999997541            11       1122444444444443  


Q ss_pred             --------------CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEE
Q 029437           63 --------------KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLG  128 (193)
Q Consensus        63 --------------~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~  128 (193)
                                    +..+++|||||+..+.......++.+|++|+|+|+++..+++... .|.....    .++|+++++
T Consensus        83 ~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~~~~----~~~p~ilvi  157 (842)
T 1n0u_A           83 DEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET-VLRQALG----ERIKPVVVI  157 (842)
T ss_dssp             HHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCEEEEEE
T ss_pred             ccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCeEEEE
Confidence                          688999999999999888888999999999999999987665543 3344333    378999999


Q ss_pred             eCCCCC
Q 029437          129 NKIDIP  134 (193)
Q Consensus       129 nK~D~~  134 (193)
                      ||+|+.
T Consensus       158 NK~D~~  163 (842)
T 1n0u_A          158 NKVDRA  163 (842)
T ss_dssp             ECHHHH
T ss_pred             ECCCcc
Confidence            999986

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.65  E-value=5.8e-17  Score=121.68  Aligned_cols=151  Identities=14%  Similarity=0.208  Sum_probs=72.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC-CccccC---------CCCCcceeEEEe----CCEEEEEEEcCCh-------hh
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDE-RLVQHQ---------PTQYPTSEELSI----GKIKFKAFDLGGH-------QI   76 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~-~~~~~~---------~t~~~~~~~~~~----~~~~~~~~D~~G~-------~~   76 (193)
                      .-.++|+|+|++|||||||++++.+. .+....         ++.......+..    ....+++||++|.       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            45689999999999999999998875 332211         122211111211    2368999999997       44


Q ss_pred             hHhhHH-------hhcc-------------cCCEEEEEEECCChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437           77 ARRVWK-------DYYA-------------KVDAVVYLVDAYDKERFAESK-KELDALLSDEALANVPFLVLGNKIDIPY  135 (193)
Q Consensus        77 ~~~~~~-------~~~~-------------~~d~vl~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~~~  135 (193)
                      +..+..       .++.             .+++++|+.+.+.. +++... +.+..+    . .+.|+++|+||.|+..
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~~~l~~l----~-~~~~iilV~~K~Dl~~  169 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDVAFMKAI----H-NKVNIVPVIAKADTLT  169 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHHHHHHHH----T-TTSCEEEEECCGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHHHHHHHH----H-hcCCEEEEEEeCCCCC
Confidence            433332       2221             24555665553221 122222 233332    1 3679999999999974


Q ss_pred             CCCH----HHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          136 AASE----EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       136 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ....    +++.+....                 ..+.++++||++| |++++|+++.+.+
T Consensus       170 ~~e~~~~~~~~~~~~~~-----------------~~~~~~e~Sa~~~-~v~e~f~~l~~~i  212 (301)
T 2qnr_A          170 LKERERLKKRILDEIEE-----------------HNIKIYHLPDAES-DEDEDFKEQTRLL  212 (301)
T ss_dssp             HHHHHHHHHHHHHHHHH-----------------TTCCCCCCC----------CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-----------------cCCeEEecCCccc-cccHHHHHHHHHh
Confidence            2111    111111110                 1246789999999 9999999887654

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.65  E-value=5.6e-17  Score=116.51  Aligned_cols=147  Identities=16%  Similarity=0.184  Sum_probs=90.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-------cCCCC----------CcceeEE------------------EeCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-------HQPTQ----------YPTSEEL------------------SIGK   63 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-------~~~t~----------~~~~~~~------------------~~~~   63 (193)
                      ...+|+++|++|||||||++++.......       ..+..          +.....+                  ...+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            34689999999999999999997542110       01100          0000011                  1234


Q ss_pred             EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHH
Q 029437           64 IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEE  141 (193)
Q Consensus        64 ~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~  141 (193)
                      ..+.+|||+|......   .+....+.+++|+|+.+....  ...+. ..      .+.|+++++||+|+...  ...++
T Consensus       109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~-~~------~~~~~iiv~NK~Dl~~~~~~~~~~  176 (221)
T 2wsm_A          109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHP-EI------FRVADLIVINKVALAEAVGADVEK  176 (221)
T ss_dssp             CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCH-HH------HHTCSEEEEECGGGHHHHTCCHHH
T ss_pred             CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhh-hh------hhcCCEEEEecccCCcchhhHHHH
Confidence            6788999999511111   111256889999998765321  11111 11      25789999999998632  34444


Q ss_pred             HHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          142 LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +.+.+....               ...+++++||++|.|+++++++|.+.+
T Consensus       177 ~~~~~~~~~---------------~~~~i~~~Sa~~g~gi~~l~~~l~~~~  212 (221)
T 2wsm_A          177 MKADAKLIN---------------PRAKIIEMDLKTGKGFEEWIDFLRGIL  212 (221)
T ss_dssp             HHHHHHHHC---------------TTSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHHHHHhC---------------CCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence            444332111               235789999999999999999998764

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.64  E-value=5.5e-15  Score=112.81  Aligned_cols=80  Identities=20%  Similarity=0.279  Sum_probs=59.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccC--CCCCcceeEEEeCC-----------------EEEEEEEcCChhhhHh
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLV-QHQ--PTQYPTSEELSIGK-----------------IKFKAFDLGGHQIARR   79 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~--~t~~~~~~~~~~~~-----------------~~~~~~D~~G~~~~~~   79 (193)
                      .++|+++|.||+|||||++++++..+. ...  .|.+++...+.+++                 ..+.+|||||......
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~   81 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence            368999999999999999999987632 222  36666666666654                 5799999999875431


Q ss_pred             -------hHHhhcccCCEEEEEEECCC
Q 029437           80 -------VWKDYYAKVDAVVYLVDAYD   99 (193)
Q Consensus        80 -------~~~~~~~~~d~vl~v~d~~~   99 (193)
                             .+...++.+|++++|+|+++
T Consensus        82 ~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           82 KGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence                   22334689999999999975

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.64  E-value=1.7e-16  Score=129.99  Aligned_cols=166  Identities=19%  Similarity=0.181  Sum_probs=114.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC--cc-------------------ccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhh
Q 029437           22 KILFLGLDNAGKTTLLHMLKDER--LV-------------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRV   80 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~--~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~   80 (193)
                      ||+|+|+.++|||||..+|+...  ..                   ....|+......+.|+++.++++|||||..|...
T Consensus         4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E   83 (638)
T 3j25_A            4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE   83 (638)
T ss_dssp             CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence            78999999999999999985211  00                   1123555566778889999999999999999998


Q ss_pred             HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---HHHHHHhhCCCccccCC-C
Q 029437           81 WKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---EEELRYHLGLSNFTTGK-G  156 (193)
Q Consensus        81 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~-~  156 (193)
                      ....++-+|++++|+|+.+.-.. +....|+....    .++|.++++||+|......   .+++.+.++......+. .
T Consensus        84 v~raL~~~DgavlVVDa~~GV~~-qT~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~  158 (638)
T 3j25_A           84 VYRSLSVLDGAILLISAKDGVQA-QTRILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE  158 (638)
T ss_dssp             HHHHHTTCSEEECCEESSCTTCS-HHHHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred             HHHHHHHhCEEEEEEeCCCCCcH-HHHHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeE
Confidence            89999999999999999876332 23344555443    3889999999999975443   23455555432210000 0


Q ss_pred             --c-cccCC----------------------------------------CCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          157 --K-VNLAD----------------------------------------SNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       157 --~-~~~~~----------------------------------------~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                        . .....                                        ......+++..||+++.|++.+++.|.+.+
T Consensus       159 ~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~  237 (638)
T 3j25_A          159 LYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF  237 (638)
T ss_dssp             SCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred             eeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccc
Confidence              0 00000                                        000135678899999999999999998764

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.63  E-value=1e-14  Score=111.89  Aligned_cols=112  Identities=20%  Similarity=0.180  Sum_probs=80.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-c--cCCCCCcceeEEEeCCEEEEEEEcCChhhh-------HhhHHhhcccCCE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLV-Q--HQPTQYPTSEELSIGKIKFKAFDLGGHQIA-------RRVWKDYYAKVDA   90 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~~~~d~   90 (193)
                      .+|+++|.||||||||+|+|++.... .  ...|..++...+.+.+.++.++||||....       ...+...++.+|+
T Consensus        73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~  152 (376)
T 4a9a_A           73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNL  152 (376)
T ss_dssp             EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSE
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCc
Confidence            48999999999999999999986632 1  234788889999999999999999995321       1223345678999


Q ss_pred             EEEEEECCChhh-HHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437           91 VVYLVDAYDKER-FAESKKELDALLSDEALANVPFLVLGNKIDIP  134 (193)
Q Consensus        91 vl~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  134 (193)
                      +++|+|+++|.. .+.+...+...  .....+.|.++++||.|..
T Consensus       153 il~vvD~~~p~~~~~~i~~EL~~~--~~~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          153 LFIILDVNKPLHHKQIIEKELEGV--GIRLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             EEEEEETTSHHHHHHHHHHHHHHT--TEEETCCCCCEEEEECSSS
T ss_pred             cccccccCccHHHHHHHHHHHHHh--hHhhccCChhhhhhHhhhh
Confidence            999999999843 22222222222  1123467888999999963

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.63  E-value=2e-16  Score=120.77  Aligned_cols=153  Identities=17%  Similarity=0.134  Sum_probs=89.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC------Ccc--ccCCC--C-----------------Cccee------------
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDE------RLV--QHQPT--Q-----------------YPTSE------------   57 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~------~~~--~~~~t--~-----------------~~~~~------------   57 (193)
                      ......|+++|++|+||||+++.+.+.      +..  ...+.  .                 .+...            
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g  132 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG  132 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence            345678999999999999999998532      110  00000  0                 00000            


Q ss_pred             ----------EEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEE
Q 029437           58 ----------ELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVL  127 (193)
Q Consensus        58 ----------~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv  127 (193)
                                .+.+.+..+.++||||.......   ....+|++++|+|++....++.+..   ..      .+.|.++|
T Consensus       133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv  200 (341)
T 2p67_A          133 ASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIV  200 (341)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEE
T ss_pred             hHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEE
Confidence                      00134678999999996544332   3478999999999976532211100   00      15688999


Q ss_pred             EeCCCCCCCCCHH----HHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          128 GNKIDIPYAASEE----ELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       128 ~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                      +||+|+.......    ++...++...    .    . . ..+..+++++||++|.|+++++++|.+.
T Consensus       201 ~NK~Dl~~~~~~~~~~~~l~~~l~~~~----~----~-~-~~~~~~vi~iSA~~g~gi~~L~~~l~~~  258 (341)
T 2p67_A          201 INKDDGDNHTNVAIARHMYESALHILR----R----K-Y-DEWQPRVLTCSALEKRGIDEIWHAIIDF  258 (341)
T ss_dssp             ECCCCTTCHHHHHHHHHHHHHHHHHSC----C----S-B-TTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred             EECCCCCChHHHHHHHHHHHHHHHhcc----c----c-c-cCCCCcEEEeeCCCCCCHHHHHHHHHHH
Confidence            9999997432222    1222111100    0    0 0 0013478999999999999999999764

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.63  E-value=1e-14  Score=120.39  Aligned_cols=156  Identities=14%  Similarity=0.092  Sum_probs=97.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCC---CCCc----------------------------------------
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQP---TQYP----------------------------------------   54 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~---t~~~----------------------------------------   54 (193)
                      ..-.+|+|+|.+++|||||+|++++..+.+...   |.-+                                        
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            466899999999999999999999987632110   1100                                        


Q ss_pred             -----------ceeEEEeC-CEEEEEEEcCChhh-------------hHhhHHhhc-ccCCEEEEEEECCChhhHHHHHH
Q 029437           55 -----------TSEELSIG-KIKFKAFDLGGHQI-------------ARRVWKDYY-AKVDAVVYLVDAYDKERFAESKK  108 (193)
Q Consensus        55 -----------~~~~~~~~-~~~~~~~D~~G~~~-------------~~~~~~~~~-~~~d~vl~v~d~~~~~~~~~~~~  108 (193)
                                 ....+... ...+.++||||...             ...+...++ ..+|++++|+|+++.........
T Consensus       129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~  208 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  208 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred             cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence                       00111111 13578999999432             333444444 57899999999986532222222


Q ss_pred             HHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH-HHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHh
Q 029437          109 ELDALLSDEALANVPFLVLGNKIDIPYAASE-EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKW  187 (193)
Q Consensus       109 ~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~  187 (193)
                      .+..+ .   ..+.|+++|+||+|+...... ..+.. .....            .......++.+||++|.|++++++.
T Consensus       209 ll~~L-~---~~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~------------l~lg~~~VV~iSA~~G~GvdeL~ea  271 (772)
T 3zvr_A          209 IAKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLE-NKLLP------------LRRGYIGVVNRSQKDIDGKKDITAA  271 (772)
T ss_dssp             HHHHH-C---TTCSSEEEEEECTTSSCTTCCSHHHHT-TCSSC------------CSSCEEECCCCCCEESSSSEEHHHH
T ss_pred             HHHHH-H---hcCCCEEEEEeCcccCCcchhhHHHHH-HHhhh------------hhccCCceEEecccccccchhHHHH
Confidence            33333 2   247899999999999843321 12211 00000            0113467889999999999999998


Q ss_pred             hhh
Q 029437          188 LSQ  190 (193)
Q Consensus       188 i~~  190 (193)
                      |.+
T Consensus       272 I~~  274 (772)
T 3zvr_A          272 LAA  274 (772)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.62  E-value=1.2e-16  Score=117.75  Aligned_cols=128  Identities=14%  Similarity=0.037  Sum_probs=67.4

Q ss_pred             EEEEEEEcCChhhhHhhH------HhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC
Q 029437           64 IKFKAFDLGGHQIARRVW------KDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA  137 (193)
Q Consensus        64 ~~~~~~D~~G~~~~~~~~------~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~  137 (193)
                      ..+.+|||||........      ...+.. +++++++|+....+..................+.|+++|+||+|+....
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            579999999987654321      124455 8889999875432222221111111100111368999999999997432


Q ss_pred             CHHHHHHhhCC-CccccCC----Cccc--------cCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          138 SEEELRYHLGL-SNFTTGK----GKVN--------LADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       138 ~~~~~~~~~~~-~~~~~~~----~~~~--------~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ...++.+.+.. .......    ....        +.+......+++++||++|.|+++++++|.+.+
T Consensus       188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~  255 (262)
T 1yrb_A          188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  255 (262)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHh
Confidence            22222221100 0000000    0000        000000123679999999999999999998764

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.60  E-value=1.5e-14  Score=120.03  Aligned_cols=121  Identities=19%  Similarity=0.074  Sum_probs=85.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC--------------c-------cccCCCCCcceeEEEeC-------CEEEEEEEcCC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDER--------------L-------VQHQPTQYPTSEELSIG-------KIKFKAFDLGG   73 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~--------------~-------~~~~~t~~~~~~~~~~~-------~~~~~~~D~~G   73 (193)
                      +|+|+|+.++|||||..+|+...              +       .....|+......+.|.       ++.++++||||
T Consensus        15 Ni~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPG   94 (709)
T 4fn5_A           15 NIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPG   94 (709)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCCS
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCC
Confidence            79999999999999999985211              0       01122444455556553       58999999999


Q ss_pred             hhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC---CHHHHHHhhC
Q 029437           74 HQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA---SEEELRYHLG  147 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~---~~~~~~~~~~  147 (193)
                      |..|.......++-+|++|+|+|+.+.-.. +....|+.....    ++|.++++||+|.....   ..+++.+.++
T Consensus        95 HvDF~~Ev~~aLr~~DgavlvVDaveGV~~-qT~~v~~~a~~~----~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~  166 (709)
T 4fn5_A           95 HVDFTIEVERSLRVLDGAVVVFCGTSGVEP-QSETVWRQANKY----GVPRIVYVNKMDRQGANFLRVVEQIKKRLG  166 (709)
T ss_dssp             CTTCHHHHHHHHHHCSEEEEEEETTTCSCH-HHHHHHHHHHHH----TCCEEEEEECSSSTTCCHHHHHHHHHHHHC
T ss_pred             CcccHHHHHHHHHHhCeEEEEEECCCCCch-hHHHHHHHHHHc----CCCeEEEEccccccCccHHHHHHHhhhhcc
Confidence            999999888899999999999999876432 334455555443    89999999999997543   2334554444

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.59  E-value=2e-16  Score=118.79  Aligned_cols=131  Identities=15%  Similarity=-0.003  Sum_probs=96.8

Q ss_pred             HHHHHHhcCCcc-c-cCCCCCcceeEEEe-CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh-hHHHHHHHH
Q 029437           35 TLLHMLKDERLV-Q-HQPTQYPTSEELSI-GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE-RFAESKKEL  110 (193)
Q Consensus        35 sl~~~l~~~~~~-~-~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~-~~~~~~~~~  110 (193)
                      +|+.++..+.|. . +.||++.... ... .+..+.+||+  +++++.+...+++++|++++|+|++++. ++..+..|+
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l  108 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL  108 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence            577777777776 3 5678885443 332 2237899999  8888888889999999999999999987 677777877


Q ss_pred             HHHHcCCCCCCCcEEEEEeCCCCCCCCCHH---HHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHh
Q 029437          111 DALLSDEALANVPFLVLGNKIDIPYAASEE---ELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKW  187 (193)
Q Consensus       111 ~~~~~~~~~~~~pviiv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~  187 (193)
                      ..+..    .++|+++|+||+|+.+....+   +..+.+.  .               . ..+++|||++|.|++++|++
T Consensus       109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~--~---------------~-~~~~~~SAktg~gv~~lf~~  166 (301)
T 1u0l_A          109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYS--G---------------L-YPIVKTSAKTGMGIEELKEY  166 (301)
T ss_dssp             HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHT--T---------------T-SCEEECCTTTCTTHHHHHHH
T ss_pred             HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHh--h---------------h-CcEEEEECCCCcCHHHHHHH
Confidence            76533    489999999999997432111   1222221  0               1 46899999999999999998


Q ss_pred             hhh
Q 029437          188 LSQ  190 (193)
Q Consensus       188 i~~  190 (193)
                      +..
T Consensus       167 l~g  169 (301)
T 1u0l_A          167 LKG  169 (301)
T ss_dssp             HSS
T ss_pred             hcC
Confidence            764

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.58  E-value=1.2e-15  Score=111.81  Aligned_cols=109  Identities=18%  Similarity=0.198  Sum_probs=85.0

Q ss_pred             cCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHH---HHHcCCC-CCCCcEEEEEeC-CCCCCCCCHHHHHHh
Q 029437           71 LGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELD---ALLSDEA-LANVPFLVLGNK-IDIPYAASEEELRYH  145 (193)
Q Consensus        71 ~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~---~~~~~~~-~~~~pviiv~nK-~D~~~~~~~~~~~~~  145 (193)
                      .+|+.+.+.++..++.++|++|||+|++|.+.+. ..+.+.   .+++... ..+.|++|++|| .|++.+.+..++.+.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~  272 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  272 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence            4678899999999999999999999999987543 222222   3333211 358999999997 699889999999999


Q ss_pred             hCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhcC
Q 029437          146 LGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~~  193 (193)
                      +++..+             .+.+.++.|||++|+|+.|.++||.+.++
T Consensus       273 L~L~~l-------------~r~W~Iq~csA~tGeGL~EGldWL~~~l~  307 (312)
T 3l2o_B          273 LHLNLL-------------NHPWLVQDTEAETLTGFLNGIEWILEEVE  307 (312)
T ss_dssp             TTGGGG-------------CSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred             cCCccC-------------CCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence            997662             14578999999999999999999998764

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.56  E-value=9.5e-16  Score=119.40  Aligned_cols=155  Identities=14%  Similarity=0.152  Sum_probs=68.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-C--------CCCCcceeEEEe--C--CEEEEEEEcCChhhh-------
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH-Q--------PTQYPTSEELSI--G--KIKFKAFDLGGHQIA-------   77 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~--------~t~~~~~~~~~~--~--~~~~~~~D~~G~~~~-------   77 (193)
                      .-.++|+|+|++|||||||++++++..+... .        ++.......+..  .  ...+++||++|....       
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            3457899999999999999999998775321 1        111111111111  1  247899999997543       


Q ss_pred             Hhh-------HH-----------hhcccC--CEEEEEEECCChhhHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437           78 RRV-------WK-----------DYYAKV--DAVVYLVDAYDKERFAESK-KELDALLSDEALANVPFLVLGNKIDIPYA  136 (193)
Q Consensus        78 ~~~-------~~-----------~~~~~~--d~vl~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~~~~  136 (193)
                      ..+       ..           ..+.++  |+++|+.+.+. .++.... .++..+ .    .++|+|+|+||+|+...
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L-~----~~v~iIlVinK~Dll~~  182 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRL-H----EKVNIIPLIAKADTLTP  182 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHH-T----TTSEEEEEEESTTSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHH-h----ccCcEEEEEEcccCccH
Confidence            111       01           122333  44555554431 2233333 344444 2    37899999999999742


Q ss_pred             CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          137 ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                      .............. .            ...++++++||+++.++++++..|...
T Consensus       183 ~ev~~~k~~i~~~~-~------------~~~i~~~~~sa~~~~~v~~~~~~l~~~  224 (418)
T 2qag_C          183 EECQQFKKQIMKEI-Q------------EHKIKIYEFPETDDEEENKLVKKIKDR  224 (418)
T ss_dssp             HHHHHHHHHHHHHH-H------------HHTCCCCCCC-----------------
T ss_pred             HHHHHHHHHHHHHH-H------------HcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence            11111111111000 0            012446788888888888877776654

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.53  E-value=2.3e-14  Score=110.00  Aligned_cols=79  Identities=16%  Similarity=0.227  Sum_probs=56.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-ccC--CCCCcceeEEEe---------------------CCEEEEEEEcCChhh
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQ--PTQYPTSEELSI---------------------GKIKFKAFDLGGHQI   76 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~--~t~~~~~~~~~~---------------------~~~~~~~~D~~G~~~   76 (193)
                      ++|+++|.||+|||||++++++.... ...  .|..++......                     ....+.+|||||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            57999999999999999999876421 111  245555555433                     235799999999765


Q ss_pred             h-------HhhHHhhcccCCEEEEEEECCC
Q 029437           77 A-------RRVWKDYYAKVDAVVYLVDAYD   99 (193)
Q Consensus        77 ~-------~~~~~~~~~~~d~vl~v~d~~~   99 (193)
                      .       ...+...++.+|++++|+|+++
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            3       2233345789999999999975

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.51  E-value=3e-14  Score=108.50  Aligned_cols=153  Identities=14%  Similarity=0.098  Sum_probs=87.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhc------CCcc--ccCCCC-------------------CcceeE-----------
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKD------ERLV--QHQPTQ-------------------YPTSEE-----------   58 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~------~~~~--~~~~t~-------------------~~~~~~-----------   58 (193)
                      ......++++|++|||||||++.+.+      .+..  ...++.                   ......           
T Consensus        52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G  131 (337)
T 2qm8_A           52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG  131 (337)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccc
Confidence            34567899999999999999999973      2211  011100                   000000           


Q ss_pred             -----------EEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEE
Q 029437           59 -----------LSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVL  127 (193)
Q Consensus        59 -----------~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv  127 (193)
                                 +...+..+.++||+|...-..   .....+|.+++|+|....+..+.+...         ....|.+++
T Consensus       132 ~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~---------i~~~~~ivv  199 (337)
T 2qm8_A          132 VAAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKG---------IFELADMIA  199 (337)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTT---------HHHHCSEEE
T ss_pred             hHHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHH---------HhccccEEE
Confidence                       122567899999999753322   233679999999998654322111110         013456888


Q ss_pred             EeCCCCCCCCCH-----HHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          128 GNKIDIPYAASE-----EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       128 ~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                      +||+|+......     .++...+....  . .       ......+++.+||++|.|++++++.|.+.
T Consensus       200 lNK~Dl~~~~~~s~~~~~~l~~a~~l~~--~-~-------~~~~~~~vl~~Sal~g~gi~~L~~~I~~~  258 (337)
T 2qm8_A          200 VNKADDGDGERRASAAASEYRAALHILT--P-P-------SATWTPPVVTISGLHGKGLDSLWSRIEDH  258 (337)
T ss_dssp             EECCSTTCCHHHHHHHHHHHHHHHTTBC--C-S-------BTTBCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             EEchhccCchhHHHHHHHHHHHHHHhcc--c-c-------ccCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence            899997532111     12222221111  0 0       00012457889999999999999998764

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.49  E-value=1.2e-16  Score=115.21  Aligned_cols=57  Identities=21%  Similarity=0.285  Sum_probs=40.1

Q ss_pred             CCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          121 NVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       121 ~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ..|.++++||+|+...  ...++....+....               ...+++++||++|.|++++|++|.+.+
T Consensus       164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~Sa~~g~gv~~l~~~l~~~~  222 (226)
T 2hf9_A          164 KTADLIVINKIDLADAVGADIKKMENDAKRIN---------------PDAEVVLLSLKTMEGFDKVLEFIEKSV  222 (226)
T ss_dssp             TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHC---------------TTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             hcCCEEEEeccccCchhHHHHHHHHHHHHHhC---------------CCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence            4678999999998632  33444433332111               235789999999999999999998754

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.39  E-value=5.7e-13  Score=102.70  Aligned_cols=88  Identities=19%  Similarity=0.343  Sum_probs=55.7

Q ss_pred             hCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCC-----------------EEEEEEEcCC
Q 029437           14 LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGK-----------------IKFKAFDLGG   73 (193)
Q Consensus        14 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-----------------~~~~~~D~~G   73 (193)
                      .++.....+|+++|.||+|||||++++++..+..   ...|..++...+...+                 ..+.+|||||
T Consensus        16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpG   95 (396)
T 2ohf_A           16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAG   95 (396)
T ss_dssp             CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC
T ss_pred             HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCC
Confidence            3445667899999999999999999999876421   2235666666665542                 3599999999


Q ss_pred             hhhhHh-------hHHhhcccCCEEEEEEECCChh
Q 029437           74 HQIARR-------VWKDYYAKVDAVVYLVDAYDKE  101 (193)
Q Consensus        74 ~~~~~~-------~~~~~~~~~d~vl~v~d~~~~~  101 (193)
                      ......       .+...++.+|++++|+|+++.+
T Consensus        96 l~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~  130 (396)
T 2ohf_A           96 LVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDD  130 (396)
T ss_dssp             -----------CCHHHHHHHTSSSEEEEEEC----
T ss_pred             cccccchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence            876443       4456678999999999997543

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.21  E-value=6.1e-12  Score=94.39  Aligned_cols=97  Identities=16%  Similarity=0.059  Sum_probs=70.4

Q ss_pred             hhhhHhhHHhhcccCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---HHHHHHhhCCC
Q 029437           74 HQIARRVWKDYYAKVDAVVYLVDAYDKE-RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---EEELRYHLGLS  149 (193)
Q Consensus        74 ~~~~~~~~~~~~~~~d~vl~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~~~~~  149 (193)
                      ++++..+...++.++|.+++|+|++++. ++..+..|+..+..    .++|+++|+||+|+.+...   .++..+.+.. 
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~-  140 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRD-  140 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH-
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHH-
Confidence            5555666667889999999999999886 78777788775533    5899999999999974321   1122221110 


Q ss_pred             ccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          150 NFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                                      ...+++++||++|.|++++++.+...
T Consensus       141 ----------------~g~~~~~~SA~~g~gi~~L~~~l~G~  166 (302)
T 2yv5_A          141 ----------------AGYDVLKVSAKTGEGIDELVDYLEGF  166 (302)
T ss_dssp             ----------------TTCEEEECCTTTCTTHHHHHHHTTTC
T ss_pred             ----------------CCCeEEEEECCCCCCHHHHHhhccCc
Confidence                            12478999999999999999987643

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.15  E-value=2e-10  Score=88.69  Aligned_cols=85  Identities=24%  Similarity=0.356  Sum_probs=63.9

Q ss_pred             CCCCCccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCC-----------------EEEEEEEcCC
Q 029437           15 GLWQKEAKILFLGLDNAGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGK-----------------IKFKAFDLGG   73 (193)
Q Consensus        15 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~-----------------~~~~~~D~~G   73 (193)
                      ++.....+++++|++|||||||++++++....  ...|  |..++...+...+                 ..+.+||+||
T Consensus        15 g~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG   94 (392)
T 1ni3_A           15 GRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG   94 (392)
T ss_dssp             SSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred             ccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccc
Confidence            34556789999999999999999999986642  2223  6677777777664                 4689999999


Q ss_pred             hhh-------hHhhHHhhcccCCEEEEEEECCC
Q 029437           74 HQI-------ARRVWKDYYAKVDAVVYLVDAYD   99 (193)
Q Consensus        74 ~~~-------~~~~~~~~~~~~d~vl~v~d~~~   99 (193)
                      ...       ....+...+..+|++++|+|+.+
T Consensus        95 l~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           95 LTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             GCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            533       23344556688999999999863

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.14  E-value=1.1e-09  Score=87.08  Aligned_cols=161  Identities=17%  Similarity=0.130  Sum_probs=90.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHh------cCCccc-----cCCCC-----------Cccee-----------------EE
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLK------DERLVQ-----HQPTQ-----------YPTSE-----------------EL   59 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~------~~~~~~-----~~~t~-----------~~~~~-----------------~~   59 (193)
                      ....|+++|.+||||||+++.|.      +....-     ..+..           +....                 ..
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            35589999999999999999997      332110     00000           00000                 01


Q ss_pred             EeCCEEEEEEEcCChhhhH----hhHHhh--cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcE-EEEEeCCC
Q 029437           60 SIGKIKFKAFDLGGHQIAR----RVWKDY--YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPF-LVLGNKID  132 (193)
Q Consensus        60 ~~~~~~~~~~D~~G~~~~~----~~~~~~--~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pv-iiv~nK~D  132 (193)
                      ...+..+.++||||.....    ......  ...+|.+++|+|+......   ......+ ..    .+|+ .+|+||.|
T Consensus       180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~-~~----~~~i~gvVlNK~D  251 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAF-KD----KVDVASVIVTKLD  251 (504)
T ss_dssp             HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHH-HH----HHCCCCEEEECTT
T ss_pred             HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHH-Hh----hcCceEEEEeCCc
Confidence            1256789999999965321    111111  2268999999999775331   1222222 11    2564 89999999


Q ss_pred             CCCCCC-HHHHHHhhCCCc--cccCCCccccCCCCCcceEEEEeeeecCCC-hhhHHHhhhhh
Q 029437          133 IPYAAS-EEELRYHLGLSN--FTTGKGKVNLADSNVRPLEVFMCSIVRKMG-YGDGFKWLSQY  191 (193)
Q Consensus       133 ~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g-v~el~~~i~~~  191 (193)
                      ...... .-.+...++.+.  +......+.+    ....+...+|+..|.| +.++++++.+.
T Consensus       252 ~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl----~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          252 GHAKGGGALSAVAATKSPIIFIGTGEHIDDF----EPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             SCCCCTHHHHHHHHHCCCEEEEECSSSTTCE----ECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             cccchHHHHHHHHHhCCCeEEeccccchhhh----hccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            874433 223445555433  1111111100    0112345689999999 99999998754

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.99  E-value=2.8e-09  Score=78.61  Aligned_cols=111  Identities=20%  Similarity=0.227  Sum_probs=61.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccccC----------CCCCcceeEEEeC----CEEEEEEEcCChhh---------
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQ----------PTQYPTSEELSIG----KIKFKAFDLGGHQI---------   76 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----------~t~~~~~~~~~~~----~~~~~~~D~~G~~~---------   76 (193)
                      +++++|+|++|||||||++.+.+...+...          .+...........    ...++++|++|...         
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            478999999999999999999865432110          0111111111111    13689999998321         


Q ss_pred             -hHh--------hHHhh----------cccCCEEEEEEECC-ChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437           77 -ARR--------VWKDY----------YAKVDAVVYLVDAY-DKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA  136 (193)
Q Consensus        77 -~~~--------~~~~~----------~~~~d~vl~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  136 (193)
                       ...        .....          +..+++.++++|-. .+-+-. ..+.+..+ ..    ..++|+++||.|....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~l-D~~~l~~L-~~----~~~vI~Vi~K~D~lt~  155 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPL-DLEFMKHL-SK----VVNIIPVIAKADTMTL  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHH-HHHHHHHH-HT----TSEEEEEETTGGGSCH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHH-HHHHHHHH-Hh----cCcEEEEEeccccCCH
Confidence             111        00111          22568899999964 221111 12333333 22    3899999999998743

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.97  E-value=3.4e-11  Score=92.69  Aligned_cols=124  Identities=15%  Similarity=0.136  Sum_probs=70.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC-----CccccCCCCCcc--eeEEEeCCEEEEEEEcCChhhhH--------hhHHhh
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDE-----RLVQHQPTQYPT--SEELSIGKIKFKAFDLGGHQIAR--------RVWKDY   84 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~-----~~~~~~~t~~~~--~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~~   84 (193)
                      ..+++++|.+|+|||||+|++.+.     ......+..+.+  ........ .+.++||||.....        ......
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~liDtPG~~~~~~~~~~l~~~~l~~~  240 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLES-GATLYDTPGIINHHQMAHFVDARDLKII  240 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECST-TCEEEECCSCCCCSSGGGGSCTTTHHHH
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCC-CeEEEeCCCcCcHHHHHHHHhHHHHHHH
Confidence            458999999999999999999876     222111111222  22222222 37899999953221        112222


Q ss_pred             c--ccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC----CHHHHHHhhCCC
Q 029437           85 Y--AKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA----SEEELRYHLGLS  149 (193)
Q Consensus        85 ~--~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~----~~~~~~~~~~~~  149 (193)
                      +  ...+.++++++....-.+..+..     ++.....+.|+++++||.|.....    ..+.+.+.++..
T Consensus       241 ~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~  306 (369)
T 3ec1_A          241 TPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLGEL  306 (369)
T ss_dssp             SCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTTT
T ss_pred             hcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCcccccccHHHHHHHHHHhcCCc
Confidence            2  57899999999843210000100     122223578999999999987322    223355566543

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.92  E-value=1.3e-08  Score=79.11  Aligned_cols=160  Identities=13%  Similarity=0.131  Sum_probs=84.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCC-Cc----ceeEEEeCC-EEEEEEEcCChhh----hHhhHH-hhccc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQ-YP----TSEELSIGK-IKFKAFDLGGHQI----ARRVWK-DYYAK   87 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~t~-~~----~~~~~~~~~-~~~~~~D~~G~~~----~~~~~~-~~~~~   87 (193)
                      ...++|+|++|||||||+|.+.+....... .+. +.    ......... -.++++|++|...    ...... ..+..
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~  148 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE  148 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence            348999999999999999999885322110 000 00    001111111 2578999998532    122222 12344


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC---------CCCCHHHHHHhhCCCccccCCCcc
Q 029437           88 VDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP---------YAASEEELRYHLGLSNFTTGKGKV  158 (193)
Q Consensus        88 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~---------~~~~~~~~~~~~~~~~~~~~~~~~  158 (193)
                      .+..++ ++.....  .+-......+..    .+.|++++.||.|+.         +.....++.+.+.......     
T Consensus       149 ~~~~~~-lS~G~~~--kqrv~la~aL~~----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~-----  216 (413)
T 1tq4_A          149 YDFFII-ISATRFK--KNDIDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNT-----  216 (413)
T ss_dssp             CSEEEE-EESSCCC--HHHHHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHH-----
T ss_pred             cCCeEE-eCCCCcc--HHHHHHHHHHHh----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHH-----
Confidence            466555 7775221  112223333332    378999999999975         2223333333222110000     


Q ss_pred             ccCCCCCcceEEEEeee--ecCCChhhHHHhhhhhc
Q 029437          159 NLADSNVRPLEVFMCSI--VRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       159 ~~~~~~~~~~~~~~~Sa--~~g~gv~el~~~i~~~~  192 (193)
                       +.+.......++.+|+  .++.|++++.+.|.+.+
T Consensus       217 -l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L  251 (413)
T 1tq4_A          217 -FRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL  251 (413)
T ss_dssp             -HHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred             -HHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence             0000001235788999  67778999999987655

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.91  E-value=3.4e-09  Score=82.53  Aligned_cols=110  Identities=13%  Similarity=0.122  Sum_probs=58.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccCC---CCCcce--eEEEeC--C--EEEEEEEcCChhh---------------
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQHQP---TQYPTS--EELSIG--K--IKFKAFDLGGHQI---------------   76 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~---t~~~~~--~~~~~~--~--~~~~~~D~~G~~~---------------   76 (193)
                      ++++|+|++|||||||++.+.+..+.....   +.....  ..+...  .  ..++++|++|...               
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i  122 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI  122 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence            459999999999999999999875432111   111111  111111  1  3689999987421               


Q ss_pred             ---hHhhHHhhc---------cc--CCE-EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437           77 ---ARRVWKDYY---------AK--VDA-VVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA  136 (193)
Q Consensus        77 ---~~~~~~~~~---------~~--~d~-vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  136 (193)
                         +...+....         ..  +|+ ++++.|...+-+  ..+..+...+   . .++|+|+|+||+|....
T Consensus       123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~--~~Dieilk~L---~-~~~~vI~Vi~KtD~Lt~  191 (427)
T 2qag_B          123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK--SLDLVTMKKL---D-SKVNIIPIIAKADAISK  191 (427)
T ss_dssp             HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C--HHHHHHHHHT---C-SCSEEEEEESCGGGSCH
T ss_pred             HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC--HHHHHHHHHH---h-hCCCEEEEEcchhccch
Confidence               111112111         11  234 555666654422  2222222222   2 58899999999998743

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.89  E-value=1.5e-09  Score=80.50  Aligned_cols=100  Identities=23%  Similarity=0.182  Sum_probs=65.2

Q ss_pred             EEEcCChh-hhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhh
Q 029437           68 AFDLGGHQ-IARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHL  146 (193)
Q Consensus        68 ~~D~~G~~-~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~  146 (193)
                      +-..||+. .....+...+..+|+++.|+|+.++.+..+  ..+..++     .++|+++++||+|+.+....+...+.+
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~   75 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF   75 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence            34578876 455666778899999999999999866432  1222332     478999999999997522222233333


Q ss_pred             CCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          147 GLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                      ..                 ...+++.+||++|.|++++++.|.+.
T Consensus        76 ~~-----------------~g~~~i~iSA~~~~gi~~L~~~i~~~  103 (282)
T 1puj_A           76 EN-----------------QGIRSLSINSVNGQGLNQIVPASKEI  103 (282)
T ss_dssp             HT-----------------TTCCEEECCTTTCTTGGGHHHHHHHH
T ss_pred             Hh-----------------cCCcEEEEECCCcccHHHHHHHHHHH
Confidence            11                 11357899999999999999887654

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.88  E-value=5e-09  Score=80.59  Aligned_cols=102  Identities=20%  Similarity=0.251  Sum_probs=66.5

Q ss_pred             ChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC-CHHHHHHhhCCCcc
Q 029437           73 GHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA-SEEELRYHLGLSNF  151 (193)
Q Consensus        73 G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~-~~~~~~~~~~~~~~  151 (193)
                      ..++|+..+.++.+.++++++|+|++++..  .....+..++     .+.|+++|+||+|+.+.. ..+++.+.+.....
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~~--~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFNG--SWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHHH--HCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCcc--cHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHH
Confidence            456788888888889999999999998741  2222223331     378999999999997543 22333222110000


Q ss_pred             ccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          152 TTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                       .         ......+++.+||++|.|+++++++|.+.
T Consensus       128 -~---------~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          128 -Q---------LGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             -H---------TTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             -H---------cCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence             0         00011368999999999999999999653

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.85  E-value=3.6e-10  Score=86.97  Aligned_cols=111  Identities=12%  Similarity=0.112  Sum_probs=64.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC------ccccCCCCCcc--eeEEEeCCEEEEEEEcCChhhhH--------hhHHh
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER------LVQHQPTQYPT--SEELSIGKIKFKAFDLGGHQIAR--------RVWKD   83 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~------~~~~~~t~~~~--~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~   83 (193)
                      ..+++++|.+|+|||||+|++.+..      .....+..+.+  ...+.... .+.++||||.....        .....
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~liDtPG~~~~~~~~~~l~~~~l~~  238 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE-ESSLYDTPGIINHHQMAHYVGKQSLKL  238 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS-SCEEEECCCBCCTTSGGGGSCHHHHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC-CeEEEeCCCcCcHHHHHHHhhHHHHHH
Confidence            3689999999999999999998753      11111112211  22222222 37899999953221        11222


Q ss_pred             h--cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437           84 Y--YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA  136 (193)
Q Consensus        84 ~--~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  136 (193)
                      .  ....+.++++++.........+..     ++.....+.|+++++||.|....
T Consensus       239 ~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~~~~~~~v~nk~d~~~~  288 (368)
T 3h2y_A          239 ITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGGRRAFTCHFSNRLTIHR  288 (368)
T ss_dssp             HSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEE
T ss_pred             hccccccCceEEEEcCCCEEEEcceEE-----EEEecCCCceEEEEecCcccccc
Confidence            2  256788899998732210111000     11222347899999999998743

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.79  E-value=3.2e-09  Score=83.20  Aligned_cols=162  Identities=16%  Similarity=0.127  Sum_probs=88.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC------cc--c---c----------------------C-CCCCcc-e--eEE-EeC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER------LV--Q---H----------------------Q-PTQYPT-S--EEL-SIG   62 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~------~~--~---~----------------------~-~t~~~~-~--~~~-~~~   62 (193)
                      ..|+++|++|+||||++..+...-      ..  .   .                      . .+.++. .  ..+ ...
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~~  179 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFK  179 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTTS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHhh
Confidence            579999999999999999985421      00  0   0                      0 011110 0  000 125


Q ss_pred             CEEEEEEEcCChhhhHh-h---HHh--hcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCC-c-EEEEEeCCCCC
Q 029437           63 KIKFKAFDLGGHQIARR-V---WKD--YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANV-P-FLVLGNKIDIP  134 (193)
Q Consensus        63 ~~~~~~~D~~G~~~~~~-~---~~~--~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p-viiv~nK~D~~  134 (193)
                      +..+.++||||...... .   ...  .+..+|.+++|+|+.....   .......+ +    ... | ..+++||.|..
T Consensus       180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~-~----~~~~~i~gvVlnK~D~~  251 (432)
T 2v3c_C          180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF-K----EAVGEIGSIIVTKLDGS  251 (432)
T ss_dssp             SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH-H----TTSCSCEEEEEECSSSC
T ss_pred             CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH-h----hcccCCeEEEEeCCCCc
Confidence            67899999999653211 1   111  1236899999999866532   22222222 2    134 5 78999999986


Q ss_pred             CCCC-HHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCC-hhhHHHhhhhhc
Q 029437          135 YAAS-EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG-YGDGFKWLSQYI  192 (193)
Q Consensus       135 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g-v~el~~~i~~~~  192 (193)
                      .... ...+....+.+..--..+ +.+. ......+...+|+..|.| +..+++.+.+.+
T Consensus       252 ~~~g~~l~~~~~~~~pi~~ig~G-e~~~-dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~  309 (432)
T 2v3c_C          252 AKGGGALSAVAETKAPIKFIGIG-EGID-DLEPFDPKKFISRLLGMGDLESLLEKAEDMV  309 (432)
T ss_dssp             STTHHHHHHHHHSSCCEEEECCS-SSSS-SCCBCCHHHHHHHHTCSSCSSTTSSTTTSCS
T ss_pred             cchHHHHHHHHHHCCCEEEeecC-cccc-ccccCCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            3221 223444444333211110 1111 111223445689999999 988888876543

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.77  E-value=5e-09  Score=80.67  Aligned_cols=102  Identities=19%  Similarity=0.246  Sum_probs=66.7

Q ss_pred             ChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC-CHHHHHHhhCCCcc
Q 029437           73 GHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA-SEEELRYHLGLSNF  151 (193)
Q Consensus        73 G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~-~~~~~~~~~~~~~~  151 (193)
                      .++.|+..+.++...++++++|+|++++.+  .....+...+     .+.|+++|+||+|+.+.. ..+++.+.+.... 
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~-  128 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMA-  128 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHH-
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHH-
Confidence            477888888888899999999999999763  1112222221     378999999999997543 2333322211100 


Q ss_pred             ccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          152 TTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                      .         +......+++.+||++|.|++++++.|.+.
T Consensus       129 ~---------~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~  159 (369)
T 3ec1_A          129 E---------ELGLCPVDVCLVSAAKGIGMAKVMEAINRY  159 (369)
T ss_dssp             H---------TTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             H---------HcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence            0         000012368999999999999999999753

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.74  E-value=1.4e-08  Score=75.36  Aligned_cols=58  Identities=21%  Similarity=0.359  Sum_probs=37.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce--eEEEeCCEEEEEEEcCChh
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTS--EELSIGKIKFKAFDLGGHQ   75 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~G~~   75 (193)
                      ....++++++|.||+|||||+|++.+.......+..+.+.  ..+..+ ..+.++||||..
T Consensus       117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtpG~~  176 (282)
T 1puj_A          117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVG-KELELLDTPGIL  176 (282)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEET-TTEEEEECCCCC
T ss_pred             CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeC-CCEEEEECcCcC
Confidence            3466899999999999999999999876443332222111  122232 368899999953

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.71  E-value=7.6e-09  Score=75.97  Aligned_cols=54  Identities=28%  Similarity=0.380  Sum_probs=34.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce--eEEEeCCEEEEEEEcCChh
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTS--EELSIGKIKFKAFDLGGHQ   75 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~G~~   75 (193)
                      ++++++|.+|+|||||+|++.+.......++.+.+.  ..+.. +..+.+|||||..
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~  155 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL-ENGVKILDTPGIL  155 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC-TTSCEEESSCEEC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe-CCCEEEEECCCcc
Confidence            699999999999999999999877654433333221  12222 2468999999965

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.56  E-value=1.8e-07  Score=73.18  Aligned_cols=110  Identities=15%  Similarity=0.133  Sum_probs=61.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc------CCcc-----ccCC-----------CCCccee-----------------EE
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD------ERLV-----QHQP-----------TQYPTSE-----------------EL   59 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~------~~~~-----~~~~-----------t~~~~~~-----------------~~   59 (193)
                      +...|+++|++|+||||++..+..      ....     ...+           ..+....                 ..
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            356899999999999999988852      1110     0000           0000000                 00


Q ss_pred             EeCCEEEEEEEcCChhhh-----HhhHH-hhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCC
Q 029437           60 SIGKIKFKAFDLGGHQIA-----RRVWK-DYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDI  133 (193)
Q Consensus        60 ~~~~~~~~~~D~~G~~~~-----~~~~~-~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~  133 (193)
                      ...+.++.++||+|-...     ..+.. .....+|.+++|+|+......   ......+...    -.+..+|+||.|.
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~----~~i~gVIlTKlD~  251 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA----TPIGSIIVTKLDG  251 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS----CTTEEEEEECCSS
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh----CCCeEEEEECCCC
Confidence            112478999999994221     11111 112357999999999765332   2222333221    2345799999998


Q ss_pred             CC
Q 029437          134 PY  135 (193)
Q Consensus       134 ~~  135 (193)
                      ..
T Consensus       252 ~~  253 (443)
T 3dm5_A          252 SA  253 (443)
T ss_dssp             CS
T ss_pred             cc
Confidence            63

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.52  E-value=2.2e-07  Score=76.02  Aligned_cols=24  Identities=25%  Similarity=0.433  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ..++|+|++|||||||++.+.+..
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred             CeEEEECCCCChHHHHHHHHhCCC
Confidence            359999999999999999998874

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.47  E-value=4.5e-07  Score=73.50  Aligned_cols=59  Identities=19%  Similarity=0.113  Sum_probs=41.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC-CCCcceeEEEe-------CCEEEEEEEcCChh
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV-QHQP-TQYPTSEELSI-------GKIKFKAFDLGGHQ   75 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~-t~~~~~~~~~~-------~~~~~~~~D~~G~~   75 (193)
                      .....+|+|+|.||+|||||+|++.+.... .... +.+.+.....+       .+..+.++||||..
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~  102 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG  102 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence            345688999999999999999999987632 2222 22333333222       45789999999964

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.45  E-value=2.3e-08  Score=73.37  Aligned_cols=94  Identities=20%  Similarity=0.077  Sum_probs=59.3

Q ss_pred             cCChhh-hHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCC
Q 029437           71 LGGHQI-ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLS  149 (193)
Q Consensus        71 ~~G~~~-~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~  149 (193)
                      .|||.. ....+...+..+|+++.|+|+.++.+..+..  +. +     . ++|.++++||+|+.+....++..+.+...
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~~~   74 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFKKQ   74 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHHHT
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHHHc
Confidence            466653 3345566779999999999999886543210  11 1     1 88999999999997532222223322111


Q ss_pred             ccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          150 NFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                                       ..++ .+||++|.|+++++++|...
T Consensus        75 -----------------g~~v-~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           75 -----------------GKRV-ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             -----------------TCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred             -----------------CCeE-EEECCCCcCHHHHHHHHHHh
Confidence                             1235 89999999999999988754

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.24  E-value=5.8e-07  Score=67.25  Aligned_cols=86  Identities=13%  Similarity=0.050  Sum_probs=57.1

Q ss_pred             hhcccCCEEEEEEECCChhh-HHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC----HHHHHHhhCCCccccCCCc
Q 029437           83 DYYAKVDAVVYLVDAYDKER-FAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS----EEELRYHLGLSNFTTGKGK  157 (193)
Q Consensus        83 ~~~~~~d~vl~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~  157 (193)
                      ..+.++|.+++|+|+.+|.. ...+.+++....    ..++|.++|+||+|+.+...    ..++.+.+..         
T Consensus        82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~----~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~---------  148 (307)
T 1t9h_A           82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRN---------  148 (307)
T ss_dssp             TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHH---------
T ss_pred             HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH----HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHh---------
Confidence            35689999999999987643 333334333332    24889999999999985432    2233333311         


Q ss_pred             cccCCCCCcceEEEEeeeecCCChhhHHHhhh
Q 029437          158 VNLADSNVRPLEVFMCSIVRKMGYGDGFKWLS  189 (193)
Q Consensus       158 ~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~  189 (193)
                              ...+++.+||.+|.|++++++.+.
T Consensus       149 --------~g~~v~~~sa~~~~g~~~L~~~~~  172 (307)
T 1t9h_A          149 --------IGYDVYLTSSKDQDSLADIIPHFQ  172 (307)
T ss_dssp             --------HTCCEEECCHHHHTTCTTTGGGGT
T ss_pred             --------CCCeEEEEecCCCCCHHHHHhhcC
Confidence                    113578899999999998887653

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.24  E-value=2.8e-06  Score=66.48  Aligned_cols=108  Identities=19%  Similarity=0.124  Sum_probs=60.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc------CCcc-----ccCC-----------CCCccee-----------------EEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKD------ERLV-----QHQP-----------TQYPTSE-----------------ELS   60 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~------~~~~-----~~~~-----------t~~~~~~-----------------~~~   60 (193)
                      ...|+++|++||||||++..+..      ....     ...+           ..+....                 ...
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~  176 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV  176 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence            56799999999999999988851      1110     0000           0000000                 011


Q ss_pred             eCCEEEEEEEcCChhh------hHhhHHh--hcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCC
Q 029437           61 IGKIKFKAFDLGGHQI------ARRVWKD--YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKID  132 (193)
Q Consensus        61 ~~~~~~~~~D~~G~~~------~~~~~~~--~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D  132 (193)
                      ..+..+.++||||...      .......  .....+.+++|+|+.......+....+.+.       -.+..+++||.|
T Consensus       177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD  249 (433)
T 3kl4_A          177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMD  249 (433)
T ss_dssp             TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGG
T ss_pred             hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEeccc
Confidence            1356789999999432      1111111  112568999999997653322222222222       235679999999


Q ss_pred             CC
Q 029437          133 IP  134 (193)
Q Consensus       133 ~~  134 (193)
                      ..
T Consensus       250 ~~  251 (433)
T 3kl4_A          250 GT  251 (433)
T ss_dssp             GC
T ss_pred             cc
Confidence            86

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.98  E-value=5.9e-05  Score=56.23  Aligned_cols=65  Identities=15%  Similarity=0.092  Sum_probs=40.4

Q ss_pred             CCEEEEEEEcCChhh--hHh-hHH-----hhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCC
Q 029437           62 GKIKFKAFDLGGHQI--ARR-VWK-----DYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKID  132 (193)
Q Consensus        62 ~~~~~~~~D~~G~~~--~~~-~~~-----~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D  132 (193)
                      .++.+.++||||...  ... +..     .....+|.+++|+|+....   +.......+..     ..| ..+++||.|
T Consensus       179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~-----~~~i~gvVlnk~D  250 (297)
T 1j8m_F          179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ-----ASKIGTIIITKMD  250 (297)
T ss_dssp             TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH-----TCTTEEEEEECGG
T ss_pred             CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh-----hCCCCEEEEeCCC
Confidence            457899999999765  321 221     1234689999999986432   22222333311     345 678999999


Q ss_pred             CC
Q 029437          133 IP  134 (193)
Q Consensus       133 ~~  134 (193)
                      ..
T Consensus       251 ~~  252 (297)
T 1j8m_F          251 GT  252 (297)
T ss_dssp             GC
T ss_pred             CC
Confidence            86

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.98  E-value=1.1e-06  Score=69.76  Aligned_cols=84  Identities=18%  Similarity=0.158  Sum_probs=50.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEE----EeCCEEEEEEEcCChhh--hHhhH--------Hh
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEEL----SIGKIKFKAFDLGGHQI--ARRVW--------KD   83 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~D~~G~~~--~~~~~--------~~   83 (193)
                      .....|+++|.+||||||+.++|.........++...+...+    ........+||..|...  .+...        ..
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            355789999999999999999987543221112211110000    01113346789988733  23322        44


Q ss_pred             hcccCCEEEEEEECCChh
Q 029437           84 YYAKVDAVVYLVDAYDKE  101 (193)
Q Consensus        84 ~~~~~d~vl~v~d~~~~~  101 (193)
                      ++...++.++|+|.++..
T Consensus       117 ~l~~~~G~~vV~D~tn~~  134 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNTT  134 (469)
T ss_dssp             HHHTTCCSEEEEESCCCS
T ss_pred             HHHhCCCCEEEEeCCCCC
Confidence            455678889999998873

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=97.93  E-value=8.7e-06  Score=57.09  Aligned_cols=41  Identities=17%  Similarity=0.166  Sum_probs=29.3

Q ss_pred             chHHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437            2 FLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .++.|+..+..+.+...+.-.+++.||||+|||+++.++..
T Consensus        40 ~~~~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           40 EFITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             CHHHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHH
Confidence            34555555555555444445699999999999999988764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.88  E-value=1.7e-05  Score=60.51  Aligned_cols=83  Identities=20%  Similarity=0.069  Sum_probs=52.1

Q ss_pred             hcccCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---HHHHHHhhCCCccccCCCccc
Q 029437           84 YYAKVDAVVYLVDAYDKE-RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---EEELRYHLGLSNFTTGKGKVN  159 (193)
Q Consensus        84 ~~~~~d~vl~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~  159 (193)
                      ...++|.+++|... +|. +...+.+++.....    .++|+++|+||+|+.+...   .+++...+..           
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~-----------  190 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRN-----------  190 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHT-----------
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHHHHHh-----------
Confidence            35789999988665 453 23334444433211    3788899999999975322   1123333221           


Q ss_pred             cCCCCCcceEEEEeeeecCCChhhHHHhh
Q 029437          160 LADSNVRPLEVFMCSIVRKMGYGDGFKWL  188 (193)
Q Consensus       160 ~~~~~~~~~~~~~~Sa~~g~gv~el~~~i  188 (193)
                            ...+++.+||.+|.|++++...+
T Consensus       191 ------~G~~v~~~Sa~~~~gl~~L~~~~  213 (358)
T 2rcn_A          191 ------IGYRVLMVSSHTQDGLKPLEEAL  213 (358)
T ss_dssp             ------TTCCEEECBTTTTBTHHHHHHHH
T ss_pred             ------CCCcEEEEecCCCcCHHHHHHhc
Confidence                  12357899999999999887654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.86  E-value=8.6e-06  Score=56.15  Aligned_cols=22  Identities=36%  Similarity=0.566  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      +++++|++|||||||++.+.+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998754

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.81  E-value=5e-05  Score=52.08  Aligned_cols=108  Identities=14%  Similarity=0.056  Sum_probs=48.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhh----cccCCEEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDY----YAKVDAVVYLVD   96 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~----~~~~d~vl~v~d   96 (193)
                      ..++|+|++|||||||++++...- .    ..+.....+......+ -+|.+|.+.++-....+    +.......++.+
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l-~----~~g~~v~~i~~~~~~~-~id~~g~Ds~~~~~~G~~~v~i~~~~~~~~~~~   80 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPAL-C----ARGIRPGLIKHTHHDM-DVDKPGKDSYELRKAGAAQTIVASQQRWALMTE   80 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH-H----HTTCCEEEEEECCC-------------CHHHHTCSEEEEECSSEEEEEEE
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhc-c----ccCCceeEEeeCCCcc-ccCCCCCceEEEEeCCcceeecccchhheeeee
Confidence            468999999999999999987642 1    1122333444443332 24566654332111111    111122233333


Q ss_pred             C--CChhhHHHHHHHHHH------HHcCCCCCCCcEEEEEeCCCCC
Q 029437           97 A--YDKERFAESKKELDA------LLSDEALANVPFLVLGNKIDIP  134 (193)
Q Consensus        97 ~--~~~~~~~~~~~~~~~------~~~~~~~~~~pviiv~nK~D~~  134 (193)
                      .  ..+..+..+...+..      +++.......|.+++.+|.+-.
T Consensus        81 ~~~~~~~~L~~ll~r~~~~~~D~ilIEg~k~~~~pki~v~~~~~~~  126 (174)
T 1np6_A           81 TPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGH  126 (174)
T ss_dssp             CSSSCCCCHHHHHHHSCGGGCSEEEEESCSSCCSEEEEEECTTSSC
T ss_pred             ccCCchhhHHHHHHhcCCCcchHHHHHHHhhcCCCEEEEEecccCC
Confidence            2  112334444433221      1222344578999999988753

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.79  E-value=7.2e-05  Score=58.67  Aligned_cols=80  Identities=15%  Similarity=0.110  Sum_probs=44.4

Q ss_pred             CCEEEEEEEcCChhhhH-hhHH-----hhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCC
Q 029437           62 GKIKFKAFDLGGHQIAR-RVWK-----DYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIP  134 (193)
Q Consensus        62 ~~~~~~~~D~~G~~~~~-~~~~-----~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~  134 (193)
                      .++.+.++||||..... ....     ..+..++.+++|+|+......   ......+ .    ...+ .-+++||.|..
T Consensus       182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f-~----~~l~i~gvVlnK~D~~  253 (433)
T 2xxa_A          182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAF-N----EALPLTGVVLTKVDGD  253 (433)
T ss_dssp             TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHH-H----HHSCCCCEEEECTTSS
T ss_pred             CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHH-h----ccCCCeEEEEecCCCC
Confidence            45789999999954321 1111     123468999999999754322   2222222 1    1233 24799999986


Q ss_pred             CCC-CHHHHHHhhCCC
Q 029437          135 YAA-SEEELRYHLGLS  149 (193)
Q Consensus       135 ~~~-~~~~~~~~~~~~  149 (193)
                      ... ....+....+.+
T Consensus       254 ~~~g~~l~i~~~~~~P  269 (433)
T 2xxa_A          254 ARGGAALSIRHITGKP  269 (433)
T ss_dssp             SCCTHHHHHHHHHCCC
T ss_pred             ccHHHHHHHHHHHCCC
Confidence            433 223355555433

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.79  E-value=3.2e-05  Score=54.49  Aligned_cols=26  Identities=23%  Similarity=0.291  Sum_probs=22.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .....|+|+|++|||||||++.+.+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            56678999999999999999998753

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.75  E-value=2.4e-05  Score=53.74  Aligned_cols=39  Identities=18%  Similarity=0.113  Sum_probs=28.7

Q ss_pred             HHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437            4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      +..++.+..+.... ..-.++++|++|+|||||++.+.+.
T Consensus        23 ~~~~~~~~~~~~~~-~g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           23 LLTIRVFVHNFNPE-EGKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             HHHHHHHHHSCCGG-GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccc-CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            45556666555432 3457999999999999999998764

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.73  E-value=4.3e-05  Score=59.98  Aligned_cols=26  Identities=15%  Similarity=0.217  Sum_probs=22.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .+-.-|.|+|++++|||+|+|++.+.
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhh
Confidence            34566899999999999999999863

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.73  E-value=1.4e-05  Score=55.95  Aligned_cols=22  Identities=36%  Similarity=0.513  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      -.++|+||+|||||||++.+.+
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999975

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.72  E-value=4.2e-05  Score=55.08  Aligned_cols=25  Identities=20%  Similarity=0.357  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .-.++|+|++|||||||++.+.+-.
T Consensus        31 Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           31 GEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3468999999999999999998754

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.72  E-value=1.7e-05  Score=54.69  Aligned_cols=23  Identities=17%  Similarity=0.433  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      -.++|+|++|||||||++.+.+.
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46899999999999999999764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.71  E-value=2.2e-05  Score=56.80  Aligned_cols=34  Identities=18%  Similarity=0.106  Sum_probs=20.6

Q ss_pred             HHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHh
Q 029437            6 WFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~   41 (193)
                      ++..++++++..  ...|+|+|++||||||+++.+.
T Consensus        15 ~~~~~~~~~~~~--~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           15 TENLYFQSMASK--LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             -----------C--CCEEEEECCTTSSHHHHHHHHH
T ss_pred             HHHHHHHHhcCC--CcEEEEECCCCCCHHHHHHHHH
Confidence            445555555532  4589999999999999999998

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.69  E-value=2.7e-05  Score=53.90  Aligned_cols=26  Identities=23%  Similarity=0.314  Sum_probs=22.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .+.-.|+++|++||||||+++.+.+.
T Consensus         7 ~~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            7 LGGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence            34457999999999999999999875

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.66  E-value=6.7e-05  Score=53.62  Aligned_cols=24  Identities=29%  Similarity=0.373  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      -.++++|++|||||||++.+.+-.
T Consensus        31 e~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           31 EFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999998753

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.65  E-value=3e-05  Score=54.32  Aligned_cols=24  Identities=29%  Similarity=0.591  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ....|+|+|++||||||+++.+.+
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            445799999999999999999864

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.64  E-value=3.2e-05  Score=54.11  Aligned_cols=24  Identities=25%  Similarity=0.336  Sum_probs=21.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .-.++|+|++|||||||++.+.+.
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhh
Confidence            446999999999999999999764

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.64  E-value=7.8e-05  Score=53.83  Aligned_cols=24  Identities=25%  Similarity=0.414  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      -.++++|++|||||||++.+.+-.
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999998754

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.63  E-value=3.3e-05  Score=55.02  Aligned_cols=27  Identities=19%  Similarity=0.304  Sum_probs=22.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      +..--++|+||+|||||||++.+.+..
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            455679999999999999999997643

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.62  E-value=7e-05  Score=55.18  Aligned_cols=25  Identities=24%  Similarity=0.300  Sum_probs=21.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .-.++|+|++|||||||++.+.+-.
T Consensus        34 Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           34 GEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcCC
Confidence            3468999999999999999998754

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.62  E-value=7.3e-05  Score=54.73  Aligned_cols=25  Identities=24%  Similarity=0.343  Sum_probs=21.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .-.++|+|++|||||||++.+.+-.
T Consensus        32 Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           32 GDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468999999999999999998753

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.61  E-value=2.9e-05  Score=54.67  Aligned_cols=26  Identities=19%  Similarity=0.374  Sum_probs=21.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ..-.++|+|++|||||||++.+.+..
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34468999999999999999997643

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.58  E-value=9.5e-05  Score=53.93  Aligned_cols=25  Identities=24%  Similarity=0.437  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .-.++|+|++|||||||++.+.+-.
T Consensus        33 Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           33 GDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468999999999999999998754

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.57  E-value=3.7e-05  Score=52.32  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ..|+|+|++||||||+.+.+...
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999998753

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.57  E-value=9.7e-05  Score=54.87  Aligned_cols=26  Identities=19%  Similarity=0.170  Sum_probs=22.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ......|+|+|++|||||||++.+..
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            45667899999999999999988753

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.57  E-value=0.0001  Score=53.20  Aligned_cols=25  Identities=28%  Similarity=0.377  Sum_probs=21.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .-.++|+|++|||||||++.+.+-.
T Consensus        32 Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           32 GQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468999999999999999998754

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.57  E-value=0.00012  Score=53.09  Aligned_cols=25  Identities=24%  Similarity=0.328  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .-.++|+|++|||||||++.+.+-.
T Consensus        35 Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           35 GEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468999999999999999998754

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.57  E-value=3.4e-05  Score=52.69  Aligned_cols=21  Identities=19%  Similarity=0.379  Sum_probs=18.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHh
Q 029437           21 AKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~   41 (193)
                      --++++|++|||||||++.+.
T Consensus        10 ei~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           10 SLVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHc
Confidence            458999999999999999644

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.57  E-value=0.00012  Score=51.93  Aligned_cols=24  Identities=33%  Similarity=0.419  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      -.++|+|++|||||||++.+.+-.
T Consensus        36 e~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           36 NVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            358999999999999999998753

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.56  E-value=3.6e-05  Score=54.72  Aligned_cols=25  Identities=28%  Similarity=0.343  Sum_probs=21.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .-.++|+|++|||||||++.+.+..
T Consensus        23 G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           23 IYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3468999999999999999997643

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.56  E-value=9.7e-05  Score=54.07  Aligned_cols=25  Identities=24%  Similarity=0.394  Sum_probs=21.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .-.++|+|++|||||||++.+.+-.
T Consensus        50 Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           50 GEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            3468999999999999999998754

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.54  E-value=4.8e-05  Score=53.59  Aligned_cols=25  Identities=36%  Similarity=0.300  Sum_probs=21.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      +...|+|+|++|||||||++.+.+.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            4457999999999999999998763

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.54  E-value=0.00011  Score=53.79  Aligned_cols=25  Identities=32%  Similarity=0.498  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .-.++|+|++|||||||++.+.+-.
T Consensus        37 Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           37 GEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3468999999999999999998754

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.53  E-value=5.5e-05  Score=52.96  Aligned_cols=25  Identities=20%  Similarity=0.276  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ...|+|+|++||||||+++.+.+.-
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            4579999999999999999987653

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.52  E-value=0.00016  Score=52.74  Aligned_cols=25  Identities=28%  Similarity=0.349  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .-.++|+|++|||||||++.+.+-.
T Consensus        41 Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           41 GEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468999999999999999998754

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.51  E-value=0.00059  Score=47.57  Aligned_cols=68  Identities=13%  Similarity=0.003  Sum_probs=45.4

Q ss_pred             CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCC-CCCCCcEEEEEeCCCCC
Q 029437           63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDE-ALANVPFLVLGNKIDIP  134 (193)
Q Consensus        63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~D~~  134 (193)
                      .+++.++|+|+...  ......+..+|.+++++..+...  ......+..+.... ..++.++.+|+|+.|..
T Consensus        75 ~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~  143 (206)
T 4dzz_A           75 DYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM  143 (206)
T ss_dssp             TSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred             CCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence            46889999998652  23344556789999999885443  45555555443221 13467889999999964

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.51  E-value=0.00016  Score=53.18  Aligned_cols=26  Identities=19%  Similarity=0.335  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ..-.++|+|++|||||||++.+.+-.
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            33468999999999999999998754

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.50  E-value=7e-05  Score=52.37  Aligned_cols=25  Identities=12%  Similarity=0.409  Sum_probs=21.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ..--|+|+||+|||||||++.|...
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhh
Confidence            4457899999999999999999754

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.50  E-value=0.00015  Score=52.03  Aligned_cols=25  Identities=36%  Similarity=0.433  Sum_probs=21.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .-.++|+|++|||||||++.+.+-.
T Consensus        34 Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           34 GQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468999999999999999998753

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.50  E-value=0.00014  Score=53.27  Aligned_cols=25  Identities=28%  Similarity=0.388  Sum_probs=21.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .-.++|+|++|||||||++.+.+-.
T Consensus        33 Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           33 GECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3468999999999999999998754

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.50  E-value=7.4e-05  Score=52.67  Aligned_cols=26  Identities=19%  Similarity=0.270  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ...-|+|+||+||||||+++.|....
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            34569999999999999999997653

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.49  E-value=7.4e-05  Score=51.06  Aligned_cols=22  Identities=27%  Similarity=0.460  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..|+++|++||||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999865

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.48  E-value=0.00017  Score=55.08  Aligned_cols=24  Identities=33%  Similarity=0.501  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      -.++++||+|||||||++.+.+-.
T Consensus        31 e~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           31 EILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCchHHHHHHHHhcCC
Confidence            358999999999999999998754

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.48  E-value=6.7e-05  Score=51.79  Aligned_cols=23  Identities=22%  Similarity=0.354  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ...|+|.|++||||||+.+.|..
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999854

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.48  E-value=6.7e-05  Score=50.90  Aligned_cols=20  Identities=30%  Similarity=0.587  Sum_probs=18.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHH
Q 029437           21 AKILFLGLDNAGKTTLLHML   40 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l   40 (193)
                      ..|+++|++||||||+.+.+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            36899999999999999999

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.47  E-value=7.3e-05  Score=53.16  Aligned_cols=23  Identities=30%  Similarity=0.358  Sum_probs=20.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ...|+|+|++||||||+.+.+..
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999864

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.47  E-value=8.3e-05  Score=54.07  Aligned_cols=34  Identities=24%  Similarity=0.257  Sum_probs=25.8

Q ss_pred             HHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437            9 GVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus         9 ~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .++......+....|+++|+|||||||+.+.+..
T Consensus        21 ~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           21 SLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             HHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             HHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3443434455667899999999999999999854

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.47  E-value=6.5e-05  Score=52.05  Aligned_cols=21  Identities=43%  Similarity=0.564  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029437           23 ILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~~~   43 (193)
                      |+|+||+|||||||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999998643

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.47  E-value=0.00016  Score=53.44  Aligned_cols=25  Identities=44%  Similarity=0.659  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .-.++|+|++|||||||++.+.+-.
T Consensus        47 Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           47 GDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3468999999999999999998754

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.47  E-value=7.1e-05  Score=52.54  Aligned_cols=24  Identities=21%  Similarity=0.357  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ....|+|+|++||||||+++.|..
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHH
Confidence            445799999999999999999864

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=97.47  E-value=0.00019  Score=52.37  Aligned_cols=36  Identities=22%  Similarity=0.293  Sum_probs=26.9

Q ss_pred             HHHHHHHHHhhCCC-CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437            4 LDWFYGVLASLGLW-QKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus         4 ~~~~~~~~~~~~~~-~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..|++.|+   .+. .+.-.|++.||||+|||.|+.++..
T Consensus        90 ~~~l~~~l---~~~~~~~n~~~l~GppgtGKt~~a~ala~  126 (267)
T 1u0j_A           90 ASVFLGWA---TKKFGKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             HHHHHHHH---TTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHH---hCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence            44555555   333 3345699999999999999999876

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.47  E-value=7.5e-05  Score=50.96  Aligned_cols=24  Identities=13%  Similarity=0.368  Sum_probs=20.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ....|+++|++||||||+++.+..
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            345799999999999999998864

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.47  E-value=8e-05  Score=50.22  Aligned_cols=26  Identities=31%  Similarity=0.226  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ..-.++++|+.|||||||++.+.+..
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            34469999999999999999998754

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.46  E-value=7.3e-05  Score=51.47  Aligned_cols=24  Identities=33%  Similarity=0.434  Sum_probs=20.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ....|+++|++||||||+.+.+..
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999863

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.46  E-value=6.2e-05  Score=52.08  Aligned_cols=21  Identities=24%  Similarity=0.278  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .++++|++||||||+++.+..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            589999999999999999975

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.46  E-value=7e-05  Score=53.98  Aligned_cols=25  Identities=32%  Similarity=0.397  Sum_probs=21.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .-.++|+|++|||||||++.+.+-.
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           31 GALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468999999999999999998754

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.45  E-value=0.00013  Score=54.02  Aligned_cols=26  Identities=23%  Similarity=0.312  Sum_probs=22.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .+...-|+++|+|||||||+.+.+..
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34556799999999999999999864

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.43  E-value=7.9e-05  Score=50.52  Aligned_cols=21  Identities=29%  Similarity=0.265  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .|+|+|++||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.43  E-value=8e-05  Score=53.89  Aligned_cols=26  Identities=27%  Similarity=0.437  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ..-.++|+|++|||||||++.+.+-.
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34468999999999999999998653

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.43  E-value=9.5e-05  Score=55.29  Aligned_cols=26  Identities=27%  Similarity=0.388  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ..-.++|+|++|||||||++.+.+-.
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCC
Confidence            34579999999999999999998643

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.42  E-value=0.00019  Score=54.94  Aligned_cols=25  Identities=24%  Similarity=0.267  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .-.++|+|++|||||||++.+.+-.
T Consensus        54 Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           54 GQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEEcCCCchHHHHHHHHhcCC
Confidence            3468999999999999999998754

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.42  E-value=0.0001  Score=50.95  Aligned_cols=24  Identities=38%  Similarity=0.426  Sum_probs=20.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ....|+++|++||||||+.+.+..
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999864

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.42  E-value=0.00034  Score=54.68  Aligned_cols=65  Identities=17%  Similarity=0.083  Sum_probs=36.7

Q ss_pred             CCEEEEEEEcCChhhhH-hhHH-----hhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCC
Q 029437           62 GKIKFKAFDLGGHQIAR-RVWK-----DYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIP  134 (193)
Q Consensus        62 ~~~~~~~~D~~G~~~~~-~~~~-----~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~  134 (193)
                      .++.+.++||||..... ....     ...-.+|.+++|+|+....   ........+-.     ..+ .-+++||.|..
T Consensus       179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~~a~~f~~-----~l~i~GVIlTKlD~~  250 (425)
T 2ffh_A          179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDE-----KVGVTGLVLTKLDGD  250 (425)
T ss_dssp             TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHH-----HTCCCEEEEESGGGC
T ss_pred             CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHHHHHHHHh-----cCCceEEEEeCcCCc
Confidence            45679999999953321 1111     1122578999999986432   22222222211     122 45788999975

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.41  E-value=0.00024  Score=49.57  Aligned_cols=39  Identities=21%  Similarity=0.204  Sum_probs=26.6

Q ss_pred             HHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437            4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      +..++.+............+++.|++|+|||+|+..+..
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           38 IRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             HHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH
Confidence            344445554433222226899999999999999998875

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.41  E-value=6.9e-05  Score=52.91  Aligned_cols=23  Identities=26%  Similarity=0.225  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      -.++++|++|||||||++.+.+.
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999875

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.41  E-value=0.00027  Score=54.28  Aligned_cols=24  Identities=33%  Similarity=0.504  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      -.++++|++|||||||++.+.+-.
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           30 EFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCC
Confidence            358999999999999999998764

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.40  E-value=9.2e-05  Score=53.77  Aligned_cols=24  Identities=29%  Similarity=0.439  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      -.++++|++|||||||++.+.+-.
T Consensus        27 e~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           27 EILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            468999999999999999998753

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.40  E-value=0.00022  Score=49.87  Aligned_cols=26  Identities=31%  Similarity=0.302  Sum_probs=22.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ......|+|+|++||||||+++.+.+
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34556899999999999999998864

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.39  E-value=7.7e-05  Score=51.85  Aligned_cols=22  Identities=32%  Similarity=0.552  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      +++++|++|||||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5899999999999999998764

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.39  E-value=9.5e-05  Score=51.74  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .+|+|+|++||||||+.+.+..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999999876

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.39  E-value=0.00011  Score=51.47  Aligned_cols=26  Identities=38%  Similarity=0.474  Sum_probs=21.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .+...|+|+|++||||||+++.+.+.
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34567999999999999999998653

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.39  E-value=0.00011  Score=51.60  Aligned_cols=24  Identities=42%  Similarity=0.659  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      +...|+|.|++||||||+.+.|..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            446899999999999999999864

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.39  E-value=9.6e-05  Score=52.19  Aligned_cols=20  Identities=35%  Similarity=0.544  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029437           22 KILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~   41 (193)
                      +|+|+|++||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQII   21 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            79999999999999999984

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.39  E-value=9.3e-05  Score=54.08  Aligned_cols=26  Identities=19%  Similarity=0.289  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ..-.++|+|++|||||||++.+.+-.
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            33468999999999999999998753

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.39  E-value=0.00012  Score=50.57  Aligned_cols=25  Identities=36%  Similarity=0.554  Sum_probs=21.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ...+|+++|++||||||+.+.+...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4468999999999999999998754

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.39  E-value=0.0001  Score=53.60  Aligned_cols=23  Identities=30%  Similarity=0.463  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      -.++|+|++|||||||++.+.+-
T Consensus        30 e~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           30 EVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999985

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.38  E-value=0.0001  Score=50.97  Aligned_cols=23  Identities=26%  Similarity=0.284  Sum_probs=20.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ...|+++|++||||||+.+.+..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998753

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.38  E-value=0.00011  Score=50.26  Aligned_cols=22  Identities=27%  Similarity=0.336  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..|+++|+|||||||+.+.+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3589999999999999999986

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.38  E-value=0.0001  Score=56.27  Aligned_cols=25  Identities=28%  Similarity=0.389  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERL   45 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~   45 (193)
                      -.++++|++|||||||+|.+.+...
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CEEEEECCCCccHHHHHHHHhcccc
Confidence            4799999999999999999997653

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.37  E-value=0.00011  Score=55.25  Aligned_cols=26  Identities=23%  Similarity=0.133  Sum_probs=22.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ......|+|+|++|||||||++.+.+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHh
Confidence            45667899999999999999999875

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.37  E-value=0.0014  Score=50.00  Aligned_cols=25  Identities=28%  Similarity=0.526  Sum_probs=21.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ...-.++|.|++|+|||++++.+..
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHH
Confidence            4445799999999999999999875

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.37  E-value=0.00011  Score=53.96  Aligned_cols=24  Identities=25%  Similarity=0.339  Sum_probs=21.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .-.++|+|++|||||||++.+.+-
T Consensus        46 Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           46 GEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            346899999999999999999985

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.37  E-value=0.00011  Score=52.01  Aligned_cols=21  Identities=29%  Similarity=0.433  Sum_probs=19.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHh
Q 029437           21 AKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~   41 (193)
                      ++|+|+|++||||||+.+.|.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIV   21 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            379999999999999999984

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.37  E-value=0.00011  Score=52.44  Aligned_cols=22  Identities=18%  Similarity=0.329  Sum_probs=20.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHh
Q 029437           20 EAKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~   41 (193)
                      ...|+|+|++||||||+.+.|.
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999885

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.36  E-value=0.00024  Score=54.23  Aligned_cols=24  Identities=29%  Similarity=0.483  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      -.++++|++|||||||++.+.+-.
T Consensus        42 e~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           42 EMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            458999999999999999998764

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.36  E-value=0.00024  Score=54.29  Aligned_cols=24  Identities=38%  Similarity=0.409  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      -.++++|++|||||||++.+.+-.
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           30 EFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEEcCCCchHHHHHHHHHCCC
Confidence            468999999999999999998764

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.36  E-value=0.00011  Score=51.45  Aligned_cols=22  Identities=27%  Similarity=0.338  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      +.|+|+|++||||||+.+.+..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999976

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.36  E-value=0.00013  Score=50.97  Aligned_cols=23  Identities=35%  Similarity=0.429  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ...|+++|++||||||+.+.+..
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            34899999999999999999863

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.36  E-value=0.00024  Score=54.62  Aligned_cols=24  Identities=33%  Similarity=0.596  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      -.++++|++|||||||++.+.+-.
T Consensus        30 e~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           30 EFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEEcCCCchHHHHHHHHHcCC
Confidence            458999999999999999998765

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.35  E-value=0.00014  Score=50.77  Aligned_cols=25  Identities=40%  Similarity=0.559  Sum_probs=21.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ....|+|+|++||||||+.+.|...
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3467999999999999999998764

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.35  E-value=0.00025  Score=54.22  Aligned_cols=24  Identities=29%  Similarity=0.380  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      -.++++|++|||||||++.+.+-.
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           30 EFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCchHHHHHHHHhcCC
Confidence            458999999999999999998764

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.35  E-value=0.00011  Score=53.47  Aligned_cols=24  Identities=33%  Similarity=0.505  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      -.++++|++|||||||++.+.+-.
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           32 DILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999998754

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.35  E-value=0.00012  Score=52.89  Aligned_cols=24  Identities=21%  Similarity=0.218  Sum_probs=21.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ....|+|+|++|||||||++.+.+
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999999865

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.35  E-value=0.00026  Score=53.25  Aligned_cols=26  Identities=27%  Similarity=0.134  Sum_probs=22.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ....+-|+|+|++|||||||++.+.+
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            44567899999999999999998853

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.34  E-value=0.00015  Score=50.57  Aligned_cols=26  Identities=31%  Similarity=0.395  Sum_probs=22.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ......|+|+|++||||||+.+.|..
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            44557899999999999999998854

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.34  E-value=0.00012  Score=54.62  Aligned_cols=25  Identities=32%  Similarity=0.478  Sum_probs=21.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .+.-.++|+|++|||||||++.+.+
T Consensus       124 ~~Ge~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          124 PKKNCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhh
Confidence            3445799999999999999999874

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.34  E-value=0.00016  Score=49.83  Aligned_cols=27  Identities=33%  Similarity=0.439  Sum_probs=22.8

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..+....|+++|.+||||||+++.+..
T Consensus         9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A            9 CIEKGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            345667899999999999999999864

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.33  E-value=0.00012  Score=53.53  Aligned_cols=26  Identities=31%  Similarity=0.380  Sum_probs=21.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ...-.++|+|++||||||+++.+.+.
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHh
Confidence            34447999999999999999998753

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.33  E-value=0.00013  Score=50.09  Aligned_cols=23  Identities=35%  Similarity=0.463  Sum_probs=20.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ...|+++|++||||||+.+.+..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999999853

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.32  E-value=0.00029  Score=54.10  Aligned_cols=25  Identities=32%  Similarity=0.464  Sum_probs=21.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .-.++++|++|||||||++.+.+-.
T Consensus        37 Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           37 GEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCC
Confidence            3468999999999999999998764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.31  E-value=0.00013  Score=53.34  Aligned_cols=24  Identities=38%  Similarity=0.595  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      -.++|+|++|||||||++.+.+-.
T Consensus        31 e~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           31 EKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999998764

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.31  E-value=0.00017  Score=50.64  Aligned_cols=25  Identities=40%  Similarity=0.606  Sum_probs=21.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      +....|+|+|++||||||+.+.|..
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence            3457899999999999999999864

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.31  E-value=0.00012  Score=51.25  Aligned_cols=22  Identities=18%  Similarity=0.527  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..|+|+|++||||||+.+.|..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.30  E-value=0.00016  Score=50.73  Aligned_cols=26  Identities=38%  Similarity=0.425  Sum_probs=22.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .....|+|+|++||||||+++.+...
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            34567999999999999999999864

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.30  E-value=0.00021  Score=51.66  Aligned_cols=25  Identities=32%  Similarity=0.497  Sum_probs=21.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ...++|+|+|++||||||+.+.|..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3567999999999999999999853

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.30  E-value=0.00016  Score=49.55  Aligned_cols=25  Identities=36%  Similarity=0.349  Sum_probs=21.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      +....|+++|++||||||+.+.+..
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence            3445799999999999999999863

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.29  E-value=0.00016  Score=51.26  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ...|+|+|++||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999998853

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.28  E-value=0.00016  Score=50.40  Aligned_cols=21  Identities=33%  Similarity=0.466  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .|+|.|++||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999865

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.27  E-value=0.00017  Score=50.82  Aligned_cols=21  Identities=38%  Similarity=0.479  Sum_probs=18.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHh
Q 029437           21 AKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~   41 (193)
                      ++|+++|+|||||+|....|.
T Consensus         1 M~Iil~GpPGsGKgTqa~~La   21 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLA   21 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            369999999999999999885

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.27  E-value=0.00014  Score=51.76  Aligned_cols=25  Identities=32%  Similarity=0.328  Sum_probs=21.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ...-.++|+|++|||||||++.+.+
T Consensus        23 ~~G~~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           23 ETQAITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4445699999999999999999976

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.27  E-value=0.00016  Score=50.09  Aligned_cols=24  Identities=25%  Similarity=0.289  Sum_probs=20.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      +...|+|+|++||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            345899999999999999998853

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=97.27  E-value=0.00022  Score=54.45  Aligned_cols=25  Identities=28%  Similarity=0.444  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .-.++++|++|||||||++.+.+-.
T Consensus        31 Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           31 GERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3468999999999999999998754

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.26  E-value=0.00016  Score=49.85  Aligned_cols=21  Identities=29%  Similarity=0.466  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .|+|.|++||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999864

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.26  E-value=9.5e-05  Score=52.89  Aligned_cols=24  Identities=21%  Similarity=0.286  Sum_probs=16.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHh-cC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLK-DE   43 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~-~~   43 (193)
                      .-.++|+|++||||||+++.+. +.
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC--
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcC
Confidence            3468999999999999999998 54

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.26  E-value=0.00035  Score=49.81  Aligned_cols=35  Identities=17%  Similarity=0.195  Sum_probs=26.1

Q ss_pred             HHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437            4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      +..++.+..+.    ..-.++|.|++|+|||++++.+..
T Consensus        40 ~~~l~~~~~~~----~~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           40 IGALKSAASGD----GVQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             HHHHHHHHHTC----SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHhCC----CCCeEEEECCCCCCHHHHHHHHHH
Confidence            44555555432    345899999999999999998865

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.26  E-value=0.00019  Score=50.49  Aligned_cols=24  Identities=38%  Similarity=0.519  Sum_probs=21.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      +...|+|+|++||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999864

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=97.25  E-value=0.00023  Score=54.14  Aligned_cols=24  Identities=29%  Similarity=0.448  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      -.++++|++|||||||++.+.+-.
T Consensus        27 e~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           27 EYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCccHHHHHHHHHcCC
Confidence            468999999999999999998764

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.24  E-value=0.0002  Score=52.01  Aligned_cols=24  Identities=33%  Similarity=0.278  Sum_probs=21.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHh
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~   41 (193)
                      +....|+|+|++||||||+++.+.
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHH
Confidence            345689999999999999999997

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.24  E-value=0.00017  Score=53.53  Aligned_cols=26  Identities=35%  Similarity=0.451  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ..-.++|+|++|||||||++.+.+-.
T Consensus        63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           63 RGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            33468999999999999999998754

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.22  E-value=0.00041  Score=47.41  Aligned_cols=24  Identities=21%  Similarity=0.398  Sum_probs=20.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .-.+++.|++|+|||++++.+...
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999988653

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.22  E-value=0.00019  Score=50.67  Aligned_cols=21  Identities=33%  Similarity=0.567  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998853

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.22  E-value=5.4e-05  Score=56.60  Aligned_cols=26  Identities=27%  Similarity=0.537  Sum_probs=21.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ..-.++++|++|||||||+|.+.+..
T Consensus       172 ~G~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          172 QDKTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcccc
Confidence            34589999999999999999998754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.22  E-value=0.00018  Score=53.75  Aligned_cols=24  Identities=25%  Similarity=0.385  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      -.++++|++|||||||++.+.+..
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CeEEEECCCCCcHHHHHHHhcccc
Confidence            468999999999999999998765

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.21  E-value=0.00021  Score=48.23  Aligned_cols=21  Identities=29%  Similarity=0.540  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      +|+|+|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999864

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.20  E-value=0.00018  Score=49.14  Aligned_cols=21  Identities=38%  Similarity=0.700  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      +|+|+|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999999864

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.20  E-value=0.00017  Score=53.05  Aligned_cols=21  Identities=33%  Similarity=0.529  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029437           23 ILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ++++|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999763

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.20  E-value=0.00022  Score=53.45  Aligned_cols=25  Identities=24%  Similarity=0.220  Sum_probs=22.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .....|+|+|++|||||||++.+.+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4556899999999999999999876

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.19  E-value=0.00016  Score=48.22  Aligned_cols=25  Identities=28%  Similarity=0.368  Sum_probs=21.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ..-.++++|++|+|||+|++.+.+.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            4457999999999999999998764

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.18  E-value=9.4e-05  Score=50.57  Aligned_cols=70  Identities=13%  Similarity=0.029  Sum_probs=34.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhh---cccCCEEEEEEE
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDY---YAKVDAVVYLVD   96 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~---~~~~d~vl~v~d   96 (193)
                      .++|+|++|||||||++.+.+.-.     ..+.....+..++..+.-+|.++...++.....+   +-..+..+++.+
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~~-----~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~   76 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPILR-----ERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRR   76 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHHH-----HTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh-----hcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEec
Confidence            689999999999999999876421     1122356666666554445555555444211110   233455666555

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.17  E-value=0.00023  Score=53.19  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ...++++|++|||||||+|.+. ..
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            3478999999999999999998 44

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.17  E-value=0.00026  Score=50.07  Aligned_cols=23  Identities=22%  Similarity=0.289  Sum_probs=20.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .+.|+|+|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999865

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.16  E-value=0.00017  Score=55.31  Aligned_cols=24  Identities=25%  Similarity=0.443  Sum_probs=21.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .-+++|+|++|||||||++.+.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999998764

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.16  E-value=0.00027  Score=49.17  Aligned_cols=25  Identities=24%  Similarity=0.230  Sum_probs=21.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      +...|+|+|++||||||+.+.|...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            4568999999999999999998764

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.15  E-value=0.00017  Score=49.38  Aligned_cols=23  Identities=30%  Similarity=0.323  Sum_probs=16.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ...|+++|.+||||||+.+.+..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999863

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.14  E-value=0.00027  Score=50.69  Aligned_cols=25  Identities=16%  Similarity=0.166  Sum_probs=20.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      +..+.|+|.|++||||||+.+.+..
T Consensus         7 ~~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            7 SGSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             --CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4557899999999999999999863

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.13  E-value=0.0003  Score=48.12  Aligned_cols=24  Identities=33%  Similarity=0.555  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ....|+++|++||||||+.+.+..
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999865

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.12  E-value=0.00024  Score=51.48  Aligned_cols=22  Identities=32%  Similarity=0.511  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .++++|++|+|||||++.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999999864

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.12  E-value=0.00025  Score=54.20  Aligned_cols=22  Identities=32%  Similarity=0.415  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .++|+|++||||||+++.+.+.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7999999999999999998653

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.11  E-value=0.00026  Score=50.23  Aligned_cols=21  Identities=29%  Similarity=0.471  Sum_probs=19.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHh
Q 029437           21 AKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~   41 (193)
                      ..|+|+|++||||||+.+.|.
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La   26 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIK   26 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999885

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.10  E-value=0.00032  Score=48.65  Aligned_cols=22  Identities=27%  Similarity=0.341  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..|+++|++||||||+.+.|..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998854

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.09  E-value=0.00032  Score=51.14  Aligned_cols=22  Identities=32%  Similarity=0.475  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..|+++|.|||||||+.+.+..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999999864

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.09  E-value=0.00032  Score=48.40  Aligned_cols=21  Identities=43%  Similarity=0.577  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .|+++|++||||||+.+.+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.08  E-value=0.00034  Score=48.73  Aligned_cols=26  Identities=27%  Similarity=0.328  Sum_probs=22.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .-++..|+++|.+||||||+.+.+..
T Consensus         9 ~~~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A            9 HHHHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHH
Confidence            44678999999999999999999865

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.08  E-value=0.00032  Score=49.89  Aligned_cols=21  Identities=38%  Similarity=0.615  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998853

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.08  E-value=0.00048  Score=46.97  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=20.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .-.++|.|++|+|||++++.+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999988653

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.08  E-value=0.00038  Score=49.86  Aligned_cols=24  Identities=33%  Similarity=0.398  Sum_probs=20.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ....|+|+|++||||||+.+.|..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446899999999999999998853

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.06  E-value=0.00036  Score=49.41  Aligned_cols=22  Identities=23%  Similarity=0.504  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..|+|+|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998853

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.06  E-value=0.00028  Score=48.44  Aligned_cols=21  Identities=33%  Similarity=0.550  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .|+|+|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999998854

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.06  E-value=0.0004  Score=48.45  Aligned_cols=22  Identities=36%  Similarity=0.324  Sum_probs=19.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHh
Q 029437           20 EAKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~   41 (193)
                      ...|+|+|++||||||+.+.|.
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~   36 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLV   36 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999886

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.05  E-value=0.00031  Score=53.15  Aligned_cols=24  Identities=21%  Similarity=0.324  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      -.++|+|++|||||||++.+.+.-
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            379999999999999999998653

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.05  E-value=0.00044  Score=51.67  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=19.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHh
Q 029437           20 EAKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~   41 (193)
                      .-.++++|++||||||+++.+.
T Consensus       102 g~vi~lvG~nGsGKTTll~~La  123 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLG  123 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHH
Confidence            4579999999999999999985

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.05  E-value=0.00038  Score=47.06  Aligned_cols=22  Identities=23%  Similarity=0.465  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      -.|+|+|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998853

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=97.04  E-value=0.00033  Score=54.16  Aligned_cols=25  Identities=28%  Similarity=0.372  Sum_probs=21.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .-.++|+|++|||||||++.+.+-.
T Consensus        47 Ge~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           47 GQRVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred             CCEEEEECCCCChHHHHHHHHhCCC
Confidence            3468999999999999999998653

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.04  E-value=0.0067  Score=42.56  Aligned_cols=67  Identities=15%  Similarity=0.011  Sum_probs=45.3

Q ss_pred             CEEEEEEEcCCh-hhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437           63 KIKFKAFDLGGH-QIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY  135 (193)
Q Consensus        63 ~~~~~~~D~~G~-~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~  135 (193)
                      .+++.++|+|+. ...  .....+..+|.+++++.. +..+.......+..+-...   +.++.+++|+.|...
T Consensus        67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~-~~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~  134 (209)
T 3cwq_A           67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTP-DALALDALMLTIETLQKLG---NNRFRILLTIIPPYP  134 (209)
T ss_dssp             GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECS-SHHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred             cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecC-CchhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence            467899999987 432  223455678999999887 4445566656555553311   567889999999754

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.03  E-value=0.00032  Score=53.72  Aligned_cols=25  Identities=40%  Similarity=0.501  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .-.++|+|++|||||||++.+.+.-
T Consensus       175 G~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          175 ERVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcC
Confidence            3479999999999999999998753

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.03  E-value=0.00034  Score=50.85  Aligned_cols=21  Identities=24%  Similarity=0.292  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .|+|+|++|||||||...|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999999853

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.02  E-value=0.00037  Score=47.23  Aligned_cols=21  Identities=29%  Similarity=0.387  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .|+|+|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998854

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=97.02  E-value=0.001  Score=54.14  Aligned_cols=26  Identities=15%  Similarity=0.328  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      +.-.++++|++|||||||++.+.+-.
T Consensus       368 ~G~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          368 AGKTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            34579999999999999999998753

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.02  E-value=0.00045  Score=47.59  Aligned_cols=22  Identities=23%  Similarity=0.246  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..|+|+|++||||||+.+.+..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998853

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.02  E-value=0.00033  Score=53.04  Aligned_cols=23  Identities=39%  Similarity=0.632  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      -.++++||+|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999998764

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.01  E-value=0.00035  Score=53.70  Aligned_cols=24  Identities=33%  Similarity=0.428  Sum_probs=20.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..-.++|+|++||||||+++.+.+
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            334699999999999999999875

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.00  E-value=0.00048  Score=46.87  Aligned_cols=22  Identities=27%  Similarity=0.362  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..++++|++|||||||+.++..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.99  E-value=0.00037  Score=51.26  Aligned_cols=22  Identities=32%  Similarity=0.511  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .++++|++|+|||||++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            3999999999999999999864

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.99  E-value=0.00039  Score=49.69  Aligned_cols=26  Identities=27%  Similarity=0.323  Sum_probs=22.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ....-|+|.|+.||||||+++.+.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            45667999999999999999998764

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.98  E-value=0.00041  Score=51.54  Aligned_cols=25  Identities=12%  Similarity=0.069  Sum_probs=21.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ....-+++.||||+|||+|++++..
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4445688889999999999999875

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.98  E-value=0.00046  Score=50.02  Aligned_cols=24  Identities=17%  Similarity=0.138  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..+.|+|+|++||||||+.+.|..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999998854

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.98  E-value=0.00048  Score=52.05  Aligned_cols=24  Identities=38%  Similarity=0.647  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      +.-.++++|++||||||+++.+.+
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag  151 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLAN  151 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999864

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.98  E-value=0.00048  Score=51.42  Aligned_cols=24  Identities=42%  Similarity=0.589  Sum_probs=20.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..-.++++|++||||||+++.+.+
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            345799999999999999999853

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.98  E-value=0.00045  Score=47.33  Aligned_cols=21  Identities=14%  Similarity=0.207  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      -.+|+|++|||||||+.++..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999854

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.97  E-value=0.00089  Score=54.53  Aligned_cols=26  Identities=15%  Similarity=0.360  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      +.-.++++|++|||||||++.+.+-.
T Consensus       368 ~G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          368 QGKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44579999999999999999998753

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.97  E-value=0.00066  Score=48.15  Aligned_cols=21  Identities=33%  Similarity=0.325  Sum_probs=18.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHh
Q 029437           21 AKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~   41 (193)
                      .-|+|+|+|||||+|....|.
T Consensus        30 kiI~llGpPGsGKgTqa~~L~   50 (217)
T 3umf_A           30 KVIFVLGGPGSGKGTQCEKLV   50 (217)
T ss_dssp             EEEEEECCTTCCHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            346789999999999998885

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.96  E-value=0.00041  Score=49.23  Aligned_cols=24  Identities=21%  Similarity=0.151  Sum_probs=20.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..-.++|+|++|+|||||+..+..
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            445689999999999999999863

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.96  E-value=0.00034  Score=50.77  Aligned_cols=23  Identities=22%  Similarity=0.440  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .-+|+|+|++||||||+.+.+..
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999854

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.96  E-value=0.001  Score=43.89  Aligned_cols=26  Identities=15%  Similarity=0.236  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ....|++.|++|+|||++.+.+....
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            44579999999999999999987643

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.95  E-value=0.00079  Score=51.57  Aligned_cols=22  Identities=32%  Similarity=0.394  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .++|.|++|+||||+++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999998753

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.94  E-value=0.022  Score=44.66  Aligned_cols=26  Identities=23%  Similarity=0.351  Sum_probs=22.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ...--|++.||||+|||+|++++.+.
T Consensus       213 ~~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          213 KPPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            44567999999999999999999763

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.93  E-value=0.00041  Score=54.11  Aligned_cols=23  Identities=35%  Similarity=0.329  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      -.++|+|++||||||+++.+.+.
T Consensus       168 gii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          168 GIILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHhh
Confidence            36999999999999999998753

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.92  E-value=0.00047  Score=55.22  Aligned_cols=24  Identities=25%  Similarity=0.229  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ..++|+|++||||||+++.+.+.-
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            359999999999999999997643

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.91  E-value=0.001  Score=46.58  Aligned_cols=21  Identities=33%  Similarity=0.441  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .+++.|++|+|||++++.+..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999998865

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.91  E-value=0.00062  Score=49.36  Aligned_cols=24  Identities=29%  Similarity=0.458  Sum_probs=20.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ...++++|++|+|||++++.+.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            346999999999999999998753

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.90  E-value=0.00091  Score=47.41  Aligned_cols=21  Identities=33%  Similarity=0.575  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .++|.|++|+|||++++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.90  E-value=0.00068  Score=50.05  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHh
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~   41 (193)
                      ..+.|+|+|++||||||+.+.|.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            35689999999999999999986

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.89  E-value=0.0013  Score=53.73  Aligned_cols=26  Identities=27%  Similarity=0.425  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      +.-.++++|++|||||||++.+.+-.
T Consensus       380 ~G~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          380 PGQKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             TTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            34579999999999999999998743

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.89  E-value=0.00066  Score=48.53  Aligned_cols=25  Identities=28%  Similarity=0.530  Sum_probs=19.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHh
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~   41 (193)
                      .-++++++|+|+|||||||+...+.
T Consensus         5 ~~~~~~~~~~G~pGsGKsT~a~~L~   29 (230)
T 3gmt_A            5 HHHHMRLILLGAPGAGKGTQANFIK   29 (230)
T ss_dssp             ----CEEEEECCTTSCHHHHHHHHH
T ss_pred             cccccceeeECCCCCCHHHHHHHHH
Confidence            3467899999999999999999884

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.88  E-value=0.00061  Score=52.03  Aligned_cols=25  Identities=28%  Similarity=0.566  Sum_probs=21.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ...-.++|.|++|+|||||++.+..
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHH
Confidence            3345799999999999999999875

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.88  E-value=0.00099  Score=54.22  Aligned_cols=26  Identities=27%  Similarity=0.575  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      +.-.++++|++|||||||++.+.+--
T Consensus       366 ~G~~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          366 KGETVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            34579999999999999999987643

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.88  E-value=0.00069  Score=47.66  Aligned_cols=25  Identities=36%  Similarity=0.502  Sum_probs=21.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .....|+++|++||||||+.+.+..
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3445799999999999999998864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.88  E-value=0.0002  Score=50.38  Aligned_cols=21  Identities=43%  Similarity=0.570  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      -|+|.|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999864

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.87  E-value=0.0015  Score=48.85  Aligned_cols=37  Identities=14%  Similarity=0.154  Sum_probs=25.9

Q ss_pred             HHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437            5 DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..+..|....+.. ....+++.|++|+|||+|+.++..
T Consensus       138 ~~~~~~i~~~~~~-~~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          138 SAILDFVEQYPSA-EQKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             HHHHHHHHHCSCS-SCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHhcccc-CCceEEEECCCCCCHHHHHHHHHH
Confidence            3444455443221 246899999999999999998865

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.87  E-value=0.0013  Score=47.59  Aligned_cols=24  Identities=29%  Similarity=0.350  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ....+++.|+||+|||++++.+..
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            445799999999999999999865

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.87  E-value=0.00078  Score=48.19  Aligned_cols=25  Identities=32%  Similarity=0.425  Sum_probs=21.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .....|+|.|++||||||+++.+..
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            3556799999999999999999865

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.87  E-value=0.001  Score=49.29  Aligned_cols=25  Identities=28%  Similarity=0.416  Sum_probs=21.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ....+++.|+||+|||++++.+...
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHH
Confidence            3468999999999999999998753

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.86  E-value=0.00054  Score=50.83  Aligned_cols=25  Identities=16%  Similarity=0.147  Sum_probs=20.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ...--++|+|++|+|||||+..+.+
T Consensus        33 ~~G~~~~i~G~~G~GKTTl~~~ia~   57 (296)
T 1cr0_A           33 RGGEVIMVTSGSGMGKSTFVRQQAL   57 (296)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            3444689999999999999998754

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.86  E-value=0.00056  Score=54.07  Aligned_cols=25  Identities=24%  Similarity=0.399  Sum_probs=21.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ..-+++|+|++|||||||++.+.+-
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCc
Confidence            4567999999999999999998654

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.86  E-value=0.0006  Score=51.89  Aligned_cols=26  Identities=27%  Similarity=0.319  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      +.-+++|+|++|||||||++.+.+..
T Consensus        70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           70 IGQRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34489999999999999999998753

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.85  E-value=0.0013  Score=50.42  Aligned_cols=23  Identities=35%  Similarity=0.504  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .-.++|.|++|+|||++++.+..
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~   67 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFN   67 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999999875

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.84  E-value=0.0011  Score=49.70  Aligned_cols=35  Identities=29%  Similarity=0.332  Sum_probs=25.0

Q ss_pred             HHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437            6 WFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .++.+..+.+  ...-.+++.|++|+|||+|++.+..
T Consensus        25 ~~~~~~~~~~--~~~~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           25 VVKEALENLG--SLYNPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             HHHHHHHTTT--TSCSSEEEECSSSSSHHHHHHHHHH
T ss_pred             HHHHHHhCcC--CCCCeEEEECCCCCcHHHHHHHHHH
Confidence            3444444432  1234699999999999999999875

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.84  E-value=0.0012  Score=50.88  Aligned_cols=25  Identities=40%  Similarity=0.442  Sum_probs=21.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ...-.++++|++|+|||||++.+.+
T Consensus       167 ~~~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          167 PKKRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHh
Confidence            3445799999999999999999885

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.82  E-value=0.0047  Score=47.66  Aligned_cols=24  Identities=29%  Similarity=0.444  Sum_probs=21.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ...++|.|++|+|||++++++...
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~  171 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAE  171 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHh
Confidence            468999999999999999999653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.81  E-value=0.0007  Score=54.61  Aligned_cols=26  Identities=19%  Similarity=0.356  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ..-.++++|++|||||||++.+.+..
T Consensus        46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           46 EGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44579999999999999999998754

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.81  E-value=0.00094  Score=50.66  Aligned_cols=20  Identities=30%  Similarity=0.461  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 029437           23 ILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~~   42 (193)
                      ++++|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999998876

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.80  E-value=0.00081  Score=51.39  Aligned_cols=24  Identities=42%  Similarity=0.589  Sum_probs=20.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..-.++++|++||||||+++.+.+
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHh
Confidence            345799999999999999999853

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.80  E-value=0.00069  Score=48.46  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=21.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ...--++|+|++|+|||||+..+..
T Consensus        22 ~~G~~~~i~G~~GsGKTtl~~~l~~   46 (243)
T 1n0w_A           22 ETGSITEMFGEFRTGKTQICHTLAV   46 (243)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHHH
Confidence            4445799999999999999999876

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.79  E-value=0.00082  Score=44.72  Aligned_cols=19  Identities=32%  Similarity=0.613  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 029437           23 ILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~   41 (193)
                      .+|+|+.|+||||++.++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5789999999999999975

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.79  E-value=0.0014  Score=48.77  Aligned_cols=25  Identities=24%  Similarity=0.312  Sum_probs=20.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .....+++.|+||+|||++++.+..
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3455799999999999999987653

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.79  E-value=0.00065  Score=51.06  Aligned_cols=23  Identities=48%  Similarity=0.592  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ..++|+|+.|||||||++.+.+.
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cEEEEEecCCCCHHHHHHHHHhh
Confidence            35789999999999999999865

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.78  E-value=0.00093  Score=46.61  Aligned_cols=21  Identities=14%  Similarity=0.251  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .|+|.|++||||||+.+.+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999854

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.78  E-value=0.002  Score=47.91  Aligned_cols=23  Identities=39%  Similarity=0.575  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      -.++++|++|+|||++++.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            47999999999999999988653

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.77  E-value=0.015  Score=45.42  Aligned_cols=26  Identities=19%  Similarity=0.405  Sum_probs=22.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ...--|++.||||+|||+|++++.+.
T Consensus       214 ~~prGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          214 KPPKGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             CCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCCCCceECCCCchHHHHHHHHHHH
Confidence            34457999999999999999999763

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.76  E-value=0.00099  Score=47.74  Aligned_cols=24  Identities=25%  Similarity=0.418  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ....|+|+|++||||||+.+.+..
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999998864

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.75  E-value=0.00089  Score=53.16  Aligned_cols=24  Identities=33%  Similarity=0.479  Sum_probs=20.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..-.++|+|++|||||||++.|.+
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHH
Confidence            345799999999999999999853

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.74  E-value=0.00075  Score=53.53  Aligned_cols=23  Identities=22%  Similarity=0.199  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      -.++|+|++|||||||++.+.+-
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl   52 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTA   52 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhcC
Confidence            46899999999999999998643

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.73  E-value=0.0012  Score=46.40  Aligned_cols=26  Identities=23%  Similarity=0.111  Sum_probs=22.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      -...--++++|++|+|||||+..+..
T Consensus        17 i~~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           17 FAPGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34455799999999999999999976

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.72  E-value=0.0015  Score=51.13  Aligned_cols=26  Identities=23%  Similarity=0.280  Sum_probs=22.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ...--|++.||||+|||+|++++.+.
T Consensus       213 ~~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          213 RAPKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence            34567999999999999999999763

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.71  E-value=0.001  Score=53.56  Aligned_cols=27  Identities=33%  Similarity=0.495  Sum_probs=22.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ...-.++++|++|||||||++.+.+..
T Consensus        23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           23 KNNTILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            344568999999999999999998753

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.71  E-value=0.001  Score=48.87  Aligned_cols=26  Identities=31%  Similarity=0.417  Sum_probs=21.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .....+++.|+||+|||++++++...
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            34457999999999999999998753

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.69  E-value=0.00091  Score=49.64  Aligned_cols=22  Identities=27%  Similarity=0.336  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..|+++|+|||||||+.+.+..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999875

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.69  E-value=0.00093  Score=52.47  Aligned_cols=26  Identities=19%  Similarity=0.322  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      +.=+++|+|++|||||||++.+.+..
T Consensus       156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          156 RGQRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            34479999999999999999998754

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.68  E-value=0.00059  Score=50.65  Aligned_cols=24  Identities=29%  Similarity=0.411  Sum_probs=17.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      +.+.|+|.|++||||||+.+.|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999988753

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.67  E-value=0.0027  Score=48.27  Aligned_cols=23  Identities=22%  Similarity=0.416  Sum_probs=19.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..+|+++|++|+||||+.+.+..
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHH
Confidence            35799999999999999987743

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.67  E-value=0.0023  Score=46.75  Aligned_cols=26  Identities=27%  Similarity=0.401  Sum_probs=22.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .....+++.|++|+|||++++.+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            44568999999999999999998753

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.66  E-value=0.0011  Score=49.80  Aligned_cols=27  Identities=19%  Similarity=0.215  Sum_probs=22.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ......+.|.|+||+|||++++.+...
T Consensus        42 ~~~~~~lli~GpPGTGKT~~v~~v~~~   68 (318)
T 3te6_A           42 SSQNKLFYITNADDSTKFQLVNDVMDE   68 (318)
T ss_dssp             TTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            345568999999999999999998643

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.66  E-value=0.0018  Score=50.66  Aligned_cols=25  Identities=24%  Similarity=0.429  Sum_probs=21.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ..--|++.||||+|||+|++++.+.
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3456999999999999999999763

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.66  E-value=0.0011  Score=54.29  Aligned_cols=26  Identities=23%  Similarity=0.413  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ..-.++|+|++|||||||++.+.+..
T Consensus       102 ~Gei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          102 PGQVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            34579999999999999999998754

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=96.66  E-value=0.026  Score=40.97  Aligned_cols=66  Identities=12%  Similarity=-0.010  Sum_probs=43.3

Q ss_pred             CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCC
Q 029437           63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDI  133 (193)
Q Consensus        63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~  133 (193)
                      .+++.++|+|+....  .....+..+|.+++++... ..+...+......+- ... .+.++.+|+|+.+.
T Consensus       144 ~yD~viiD~pp~~~~--~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~-~~~-~~~~~~vv~N~~~~  209 (267)
T 3k9g_A          144 KYDYIVIDTNPSLDV--TLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVR-KLN-LFLPIFLIITRFKK  209 (267)
T ss_dssp             TCSEEEEEECSSCSH--HHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHH-TTT-CCCCEEEEEEEECT
T ss_pred             CCCEEEEECcCCccH--HHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHH-HHh-ccCCEEEEEecccC
Confidence            467899999986432  2334456799999999984 444555555554442 222 35678899999943

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.66  E-value=0.0012  Score=49.17  Aligned_cols=25  Identities=32%  Similarity=0.515  Sum_probs=21.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ..-.+++.|++|+|||++++.+...
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHH
Confidence            4457999999999999999998763

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.64  E-value=0.0019  Score=52.60  Aligned_cols=26  Identities=23%  Similarity=0.388  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      +.-.++++|++|||||||++.+.+--
T Consensus       368 ~Ge~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          368 PGSLVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            34479999999999999999987643

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.63  E-value=0.0011  Score=50.89  Aligned_cols=19  Identities=26%  Similarity=0.513  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 029437           23 ILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~   41 (193)
                      .+|+|+.|||||||+++++
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5689999999999999986

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.63  E-value=0.0011  Score=46.83  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ...|+|+|++||||||+.+.+..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998854

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.62  E-value=0.0017  Score=49.11  Aligned_cols=22  Identities=36%  Similarity=0.584  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ++++.||+|+||||+++.+.+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999998754

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.62  E-value=0.0011  Score=54.17  Aligned_cols=26  Identities=23%  Similarity=0.360  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ..-.++|+|++|||||||++.+.+..
T Consensus       116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          116 DGMVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCC
Confidence            44579999999999999999998754

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.60  E-value=0.0022  Score=48.42  Aligned_cols=22  Identities=36%  Similarity=0.600  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .+++.|++|+|||++++.+...
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999998754

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.59  E-value=0.00074  Score=44.51  Aligned_cols=24  Identities=8%  Similarity=0.192  Sum_probs=20.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ...|++.|++|+|||++++.+...
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCcEEEECCCCccHHHHHHHHHHh
Confidence            357999999999999999988754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.58  E-value=0.0013  Score=53.07  Aligned_cols=25  Identities=32%  Similarity=0.424  Sum_probs=21.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .-.++|+|++|||||||++.+.+..
T Consensus       312 Ge~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          312 GEVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468999999999999999998754

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.58  E-value=0.0012  Score=48.63  Aligned_cols=24  Identities=21%  Similarity=0.151  Sum_probs=20.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..-.++|+|++|+|||||+..+..
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            334689999999999999998864

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.56  E-value=0.0026  Score=51.03  Aligned_cols=22  Identities=27%  Similarity=0.451  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      -.+++.|++|+|||++++.+..
T Consensus        78 ~~lLL~GppGtGKTtla~~la~   99 (516)
T 1sxj_A           78 RAAMLYGPPGIGKTTAAHLVAQ   99 (516)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999875

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.56  E-value=0.0013  Score=52.99  Aligned_cols=24  Identities=38%  Similarity=0.430  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      -.++|+|++|||||||++.+.+..
T Consensus       295 ei~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          295 EIIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999998754

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.55  E-value=0.002  Score=51.16  Aligned_cols=23  Identities=35%  Similarity=0.489  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ..++++|+||+|||+|++++.+.
T Consensus        50 ~gvLL~GppGtGKT~Laraia~~   72 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAGE   72 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            45999999999999999998763

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.52  E-value=0.0015  Score=58.15  Aligned_cols=25  Identities=20%  Similarity=0.401  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      +.-+|+|+|++|||||||++.+.+-
T Consensus      1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A         1104 PGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp             TTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcC
Confidence            4558999999999999999999764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.52  E-value=0.0015  Score=53.45  Aligned_cols=25  Identities=32%  Similarity=0.424  Sum_probs=21.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .-.++|+|++|||||||++.+.+..
T Consensus       382 Gei~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          382 GEVIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468999999999999999998754

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.50  E-value=0.0013  Score=50.81  Aligned_cols=26  Identities=19%  Similarity=0.356  Sum_probs=21.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ...--|++.||||+|||+|++++.+.
T Consensus       180 ~~prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          180 AQPKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCCCceEEeCCCCCCHHHHHHHHHHh
Confidence            34457999999999999999999763

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.49  E-value=0.002  Score=48.43  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=21.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ....+++.|+||+|||++++++..
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHH
Confidence            446799999999999999999865

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.48  E-value=0.0021  Score=44.87  Aligned_cols=25  Identities=20%  Similarity=0.198  Sum_probs=21.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ...|+|+|++|+|||+|...|...-
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhC
Confidence            4568999999999999999987543

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.46  E-value=0.0021  Score=48.33  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=21.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..-.+++.|+||+|||+|++++..
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~   67 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVAT   67 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCceEEEECCCCccHHHHHHHHHH
Confidence            345799999999999999999875

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.45  E-value=0.0017  Score=46.42  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=19.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHh
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~   41 (193)
                      ..--++|+|++|+|||||+.++.
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            44468999999999999987764

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.44  E-value=0.0029  Score=49.76  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .-.+++.|++|+|||+|++.+.+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~  152 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGN  152 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34699999999999999999875

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.41  E-value=0.0038  Score=47.55  Aligned_cols=23  Identities=22%  Similarity=0.340  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .-.+++.|+||+|||++++.+..
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~   92 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQ   92 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999864

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.41  E-value=0.0018  Score=47.95  Aligned_cols=23  Identities=30%  Similarity=0.492  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ...+++.|+||+|||++++.+..
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999864

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.41  E-value=0.0019  Score=48.09  Aligned_cols=23  Identities=39%  Similarity=0.498  Sum_probs=19.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHh
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~   41 (193)
                      ..-.++++|++|+||||++..+.
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA  126 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLA  126 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            34579999999999999998874

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.41  E-value=0.0031  Score=47.47  Aligned_cols=25  Identities=40%  Similarity=0.478  Sum_probs=21.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ....+++.|++|+|||++++.+...
T Consensus        54 ~~~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           54 CLDHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHH
Confidence            3456999999999999999998653

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.38  E-value=0.0037  Score=55.65  Aligned_cols=25  Identities=20%  Similarity=0.417  Sum_probs=21.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      +.-.++|+|++|||||||++.+.+-
T Consensus       443 ~G~~vaivG~sGsGKSTll~ll~~~  467 (1321)
T 4f4c_A          443 AGQTVALVGSSGCGKSTIISLLLRY  467 (1321)
T ss_dssp             TTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred             CCcEEEEEecCCCcHHHHHHHhccc
Confidence            4457999999999999999998864

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.38  E-value=0.0024  Score=43.88  Aligned_cols=21  Identities=29%  Similarity=0.358  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029437           23 ILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ++|+|.+|||||++..++...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999998854

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.38  E-value=0.0029  Score=50.11  Aligned_cols=24  Identities=21%  Similarity=0.375  Sum_probs=20.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .-+++++|+||+|||++++.+...
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999988654

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.38  E-value=0.002  Score=52.64  Aligned_cols=23  Identities=30%  Similarity=0.586  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .++|+|++|||||||++.+.+..
T Consensus       380 iv~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          380 ILVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             EEEEESCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47999999999999999998764

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.37  E-value=0.0023  Score=47.88  Aligned_cols=24  Identities=29%  Similarity=0.358  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ..-|+|+||+|||||+|...+...
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHh
Confidence            346899999999999999998643

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.37  E-value=0.004  Score=49.12  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=20.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..-.+++.||||+|||++...+..
T Consensus        62 ~~~~iLl~GppGtGKT~la~ala~   85 (456)
T 2c9o_A           62 AGRAVLLAGPPGTGKTALALAIAQ   85 (456)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCcCCHHHHHHHHHH
Confidence            345799999999999999998854

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.36  E-value=0.0018  Score=49.28  Aligned_cols=26  Identities=31%  Similarity=0.290  Sum_probs=21.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ...--+.|+|++|+|||||+..+...
T Consensus       129 ~~G~i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          129 ETQAITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34456899999999999999998754

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.36  E-value=0.0025  Score=49.67  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=20.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ...-|+++|++||||||+.+++..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345688999999999999999875

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.35  E-value=0.0012  Score=53.29  Aligned_cols=26  Identities=35%  Similarity=0.576  Sum_probs=22.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .+...|+|+|++|||||||++.+.+.
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHh
Confidence            45578999999999999999998764

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.33  E-value=0.0024  Score=43.52  Aligned_cols=23  Identities=35%  Similarity=0.421  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .=+++.|++|+||||+...+...
T Consensus        17 ~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            45899999999999999998754

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.32  E-value=0.0024  Score=44.72  Aligned_cols=20  Identities=30%  Similarity=0.547  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029437           22 KILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~   41 (193)
                      -.+|+|+.|+||||++.++.
T Consensus        25 ~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHH
Confidence            35788999999999999874

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.31  E-value=0.0015  Score=47.59  Aligned_cols=26  Identities=35%  Similarity=0.404  Sum_probs=21.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ++...|+|.|.+||||||+++.|...
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHh
Confidence            34568999999999999999988653

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.29  E-value=0.0028  Score=44.81  Aligned_cols=24  Identities=25%  Similarity=0.238  Sum_probs=20.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHh
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~   41 (193)
                      |+..-|++.|++||||||+++.+.
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~   27 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLA   27 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHH
Confidence            445679999999999999999875

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.29  E-value=0.0026  Score=48.12  Aligned_cols=22  Identities=27%  Similarity=0.321  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..|+|+|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4699999999999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	193
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	6e-37
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	7e-27
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	9e-27
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-26
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	9e-26
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-23
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	5e-23
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-22
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	2e-21
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	1e-19
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	1e-17
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-17
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	3e-16
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	2e-15
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	3e-15
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	3e-12
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	8e-12
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	2e-11
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	6e-11
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	7e-11
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	1e-10
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	1e-10
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	1e-09
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	2e-09
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	4e-09
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	4e-09
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	6e-09
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	7e-09
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	2e-08
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	2e-08
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	3e-08
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	3e-08
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	6e-08
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	1e-07
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	3e-07
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	5e-07
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	1e-06
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	1e-06
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	2e-06
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	4e-06
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	1e-05
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-05
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	3e-05
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	5e-05
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	6e-05
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	6e-05
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	7e-05
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	8e-05
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	9e-05
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	1e-04
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	2e-04
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	2e-04
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	5e-04
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	7e-04
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	0.002
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	0.004
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	0.004

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score =  124 bits (312), Expect = 6e-37
 Identities = 114/183 (62%), Positives = 143/183 (78%)

Query: 10  VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAF 69
           VL  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  F
Sbjct: 3   VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTF 62

Query: 70  DLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGN 129
           DLGGH  ARRVWK+Y   ++ +V+LVD  D ER  ESK+ELD+L++DE +ANVP L+LGN
Sbjct: 63  DLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGN 122

Query: 130 KIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLS 189
           KID P A SEE LR   GL   TTGKG V+L + N RPLEVFMCS++++ GYG+GF+W++
Sbjct: 123 KIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 182

Query: 190 QYI 192
           QYI
Sbjct: 183 QYI 185

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 98.2 bits (243), Expect = 7e-27
 Identities = 103/170 (60%), Positives = 126/170 (74%), Gaps = 5/170 (2%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW 81
           K+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG IKF  FDLGGH  ARR+W
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 61

Query: 82  KDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE 141
           KDY+ +V+ +V+LVDA D ERF E++ ELDAL +   L +VPF++LGNKID P A SE E
Sbjct: 62  KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 121

Query: 142 LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 191
           LR  LGL N T  +          RP+EVFMCS+V + GY + F+WLSQY
Sbjct: 122 LRSALGLLNTTGSQRI-----EGQRPVEVFMCSVVMRNGYLEAFQWLSQY 166

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 98.5 bits (244), Expect = 9e-27
 Identities = 65/188 (34%), Positives = 90/188 (47%), Gaps = 12/188 (6%)

Query: 6   WFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIK 65
            F  +   L    KE +IL LGLD AGKTT+L+ L+   +V  +PT     E LS   +K
Sbjct: 3   IFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLK 62

Query: 66  FKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFL 125
              +DLGG    R  W+ YYA   AV+++VD+ DK+R + + KEL  +L +E L +   L
Sbjct: 63  LNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALL 122

Query: 126 VLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGF 185
           V  NK D P A S  E+   L L                 R   +   S ++  G  +G 
Sbjct: 123 VFANKQDQPGALSASEVSKELNLVELKD------------RSWSIVASSAIKGEGITEGL 170

Query: 186 KWLSQYIK 193
            WL   IK
Sbjct: 171 DWLIDVIK 178

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 96.9 bits (240), Expect = 3e-26
 Identities = 56/185 (30%), Positives = 89/185 (48%), Gaps = 12/185 (6%)

Query: 9   GVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKA 68
           G + S     KE +IL LGLD AGKTT+L+ LK  + V   PT     E ++   +KF  
Sbjct: 1   GKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNV 60

Query: 69  FDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLG 128
           +D+GG    R +W+ YY     ++++VD  D++R  E+++EL  +++D  + +   L+  
Sbjct: 61  WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA 120

Query: 129 NKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWL 188
           NK D+P A    E++  LGL+                R   V         G  +G  WL
Sbjct: 121 NKQDLPDAMKPHEIQEKLGLTRIRD------------RNWYVQPSCATSGDGLYEGLTWL 168

Query: 189 SQYIK 193
           +   K
Sbjct: 169 TSNYK 173

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 95.8 bits (237), Expect = 9e-26
 Identities = 58/175 (33%), Positives = 88/175 (50%), Gaps = 12/175 (6%)

Query: 18  QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
            +E +IL LGLDNAGKTTLL  L  E +    PTQ    + +     K   +D+GG +  
Sbjct: 14  DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKI 73

Query: 78  RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA 137
           R  W+ Y+   D ++Y++D+ D++RF E+ +EL  LL +E L+ VP L+  NK D+  AA
Sbjct: 74  RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 133

Query: 138 SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192
              E+   L L                 R  ++  CS +   G  DG  W+ + +
Sbjct: 134 PASEIAEGLNLHTI------------RDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 90.1 bits (222), Expect = 1e-23
 Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 12/175 (6%)

Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR 78
           +E ++L LGLDNAGKTT+L     E +    PT     + L     K   +D+GG +  R
Sbjct: 1   RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 60

Query: 79  RVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS 138
             W++Y+   D ++++VD+ D++R  + ++EL +LL +E LA    L+  NK D+P A S
Sbjct: 61  SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 120

Query: 139 EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
              ++  L L +  +                +  CS V       G  WL   I 
Sbjct: 121 CNAIQEALELDSIRS------------HHWRIQGCSAVTGEDLLPGIDWLLDDIS 163

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 88.5 bits (218), Expect = 5e-23
 Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 12/178 (6%)

Query: 16  LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQ 75
              +E K++ +GLDNAGKTT+L+      +V   PT     EE+ I   +F  +D+GG +
Sbjct: 11  FNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQE 70

Query: 76  IARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY 135
             R  W  YY   + V+ +VD+ D+ER + +++EL  +L+ E L     L+  NK D+  
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 130

Query: 136 AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
             +  E+   L L++                   +  C  +   G   G +W+   +K
Sbjct: 131 CMTVAEISQFLKLTSIKD------------HQWHIQACCALTGEGLCQGLEWMMSRLK 176

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 87.4 bits (215), Expect = 1e-22
 Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 12/171 (7%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW 81
           +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61

Query: 82  KDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE 141
           + Y+     ++++VD+ D+ER  E+++EL  +L+++ L +   LV  NK D+P A +  E
Sbjct: 62  RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 121

Query: 142 LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192
           +   LGL +               R   +         G  +G  WLS  +
Sbjct: 122 ITDKLGLHSL------------RHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.6 bits (211), Expect = 2e-21
 Identities = 25/127 (19%), Positives = 55/127 (43%), Gaps = 13/127 (10%)

Query: 16  LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQ 75
           +++   ++L LG   +GK+T++  ++         T      +  + K+ F  FD+GG +
Sbjct: 2   VYRATHRLLLLGAGESGKSTIVKQMRIL---HVVLTSGIFETKFQVDKVNFHMFDVGGQR 58

Query: 76  IARRVWKDYYAKVDAVVYLV----------DAYDKERFAESKKELDALLSDEALANVPFL 125
             RR W   +  V A++++V          +     R  E+     ++ ++  L  +  +
Sbjct: 59  DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI 118

Query: 126 VLGNKID 132
           +  NK D
Sbjct: 119 LFLNKQD 125

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 79.7 bits (195), Expect = 1e-19
 Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 13/176 (7%)

Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
           +E ++  +GL  +GKTT ++++   +  +   PT      +++ G +  K +D+GG    
Sbjct: 1   EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRF 60

Query: 78  RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA 137
           R +W+ Y   V A+VY+VDA D+E+   SK EL  LL    L  +P LVLGNK D+P A 
Sbjct: 61  RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL 120

Query: 138 SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
            E+EL   + LS                R +  +  S   K       +WL Q+ K
Sbjct: 121 DEKELIEKMNLSAIQD------------REICCYSISCKEKDNIDITLQWLIQHSK 164

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.1 bits (183), Expect = 1e-17
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRV- 80
            +LF+GL ++GKT L   L   +    Q +   +S    +   +  +  L        + 
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLR 61

Query: 81  ---WKDYYAKVDAVVYLVDAYDKERFAES-KKELDALLSDEALAN--VPFLVLGNKIDIP 134
                 + +   AVV++VD+   +R  +   + L  +L D          L+  NK DI 
Sbjct: 62  FQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA 121

Query: 135 YAASEEELRYHL 146
            A S + ++  L
Sbjct: 122 MAKSAKLIQQQL 133

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 74.0 bits (180), Expect = 1e-17
 Identities = 60/175 (34%), Positives = 91/175 (52%), Gaps = 12/175 (6%)

Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR 78
           +E +IL LGLD AGKTT+L+ L+   +V   PT     E ++   +KF+ +DLGG    R
Sbjct: 4   REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 63

Query: 79  RVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS 138
             W+ YY+  DAV+Y+VD+ D++R   SK EL A+L +E L     +V  NK D+  A +
Sbjct: 64  PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 123

Query: 139 EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
             E+   LGL                 R  ++F  S  +  G  +  +WL + +K
Sbjct: 124 SSEMANSLGLPAL------------KDRKWQIFKTSATKGTGLDEAMEWLVETLK 166

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.1 bits (173), Expect = 3e-16
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 12/126 (9%)

Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR 78
           +  KIL LG   +GK+T L  ++   +    PT+     +  I  + FK  D+GG +  R
Sbjct: 1   RLVKILLLGAGESGKSTFLKQMRI--IHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSER 58

Query: 79  RVWKDY----------YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLG 128
           + W +            +  +    L++     R  ES    + ++++   +NV  ++  
Sbjct: 59  KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFL 118

Query: 129 NKIDIP 134
           NK D+ 
Sbjct: 119 NKTDLL 124

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.8 bits (167), Expect = 2e-15
 Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 11/124 (8%)

Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR 78
           +E K+L LG   +GK+T +  ++        PT         +  + F+  D+GG +  R
Sbjct: 1   RELKLLLLGTGESGKSTFIKQMRIIH-GSGVPTTGIIEYPFDLQSVIFRMVDVGGQRSER 59

Query: 79  RVWKDYYAKVDAVVYLVDAYDKER----------FAESKKELDALLSDEALANVPFLVLG 128
           R W   +  V ++++LV   + ++            ESK     +++     N   ++  
Sbjct: 60  RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL 119

Query: 129 NKID 132
           NK D
Sbjct: 120 NKKD 123

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.4 bits (166), Expect = 3e-15
 Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 14/125 (11%)

Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR 78
           +E K+L LG   +GK+T++  +K      H+          +   + FK FD+GG +  R
Sbjct: 1   REVKLLLLGAGESGKSTIVKQMKII----HEAGTGIVETHFTFKDLHFKMFDVGGQRSER 56

Query: 79  RVWKDYYAKVDAVVYLVDAYDKE----------RFAESKKELDALLSDEALANVPFLVLG 128
           + W   +  V A+++ V   D +          R  ES K  D++ +++   +   ++  
Sbjct: 57  KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFL 116

Query: 129 NKIDI 133
           NK D+
Sbjct: 117 NKKDL 121

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.8 bits (144), Expect = 3e-12
 Identities = 31/177 (17%), Positives = 64/177 (36%), Gaps = 22/177 (12%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLV-QHQPTQ----YPTSEELSIGKIKFKAFDLGGHQI 76
           KIL +G    GK+ LL    +++       T        + +++  K+K + +D  G + 
Sbjct: 4   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 63

Query: 77  ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA 136
            R +   YY     ++ + D  D+  F  + K+    +++ A      L++GNK D+   
Sbjct: 64  FRTITTAYYRGAMGIILVYDITDERTF-TNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 122

Query: 137 ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
               +                   A +    +     S        + F  L++ I+
Sbjct: 123 VVTAD----------------QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 163

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 8e-12
 Identities = 21/121 (17%), Positives = 45/121 (37%), Gaps = 4/121 (3%)

Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ----YPTSEELSIGKIKFKAFDLGGH 74
           +E K++ LG    GK+ L         ++         Y    E+       +  D  G 
Sbjct: 2   REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61

Query: 75  QIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP 134
           +    +   Y       + +    +++ F + K   D ++  +    VP +++GNK+D+ 
Sbjct: 62  EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121

Query: 135 Y 135
            
Sbjct: 122 S 122

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.8 bits (139), Expect = 2e-11
 Identities = 27/177 (15%), Positives = 61/177 (34%), Gaps = 21/177 (11%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQ-----YPTSEELSIGKIKFKAFDLGGHQI 76
           K+L +G    GKT +L    ++       +         + EL   +IK + +D  G + 
Sbjct: 8   KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67

Query: 77  ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA 136
            R +   YY     ++ + D  +++ F   +  +  +    +      ++          
Sbjct: 68  FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 127

Query: 137 ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
              +E             +G+    D  ++ +E    S    +   + F  L++ IK
Sbjct: 128 QVSKE-------------RGEKLALDYGIKFME---TSAKANINVENAFFTLARDIK 168

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.8 bits (136), Expect = 6e-11
 Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 6/114 (5%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLV-QHQPTQ----YPTSEELSIGKIKFKAFDLGGHQI 76
           K+L +G    GK+ LL    D+     +  T        + EL    +K + +D  G + 
Sbjct: 8   KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 67

Query: 77  ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNK 130
            R +   YY     ++ + D  D+E F   K  L  +      + V  L++GNK
Sbjct: 68  FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT-STVLKLLVGNK 120

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.0 bits (136), Expect = 7e-11
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 9/135 (6%)

Query: 20  EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARR 79
           +  I+  G  N+GKT+LL +L  + +     +Q                 D  GH   R 
Sbjct: 3   QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ-EPLSAADYDGSGVTLVDFPGHVKLRY 61

Query: 80  VWKDYY----AKVDAVVYLVDAYDKERF----AESKKELDALLSDEALANVPFLVLGNKI 131
              DY       V  ++++VD+    +     AE   ++ ++        +  L+  NK 
Sbjct: 62  KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKS 121

Query: 132 DIPYAASEEELRYHL 146
           ++  A    +++  L
Sbjct: 122 ELFTARPPSKIKDAL 136

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 1e-10
 Identities = 29/177 (16%), Positives = 57/177 (32%), Gaps = 21/177 (11%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKI-----KFKAFDLGGHQI 76
           K++ +G    GK+ LL             +           ++     K + +D  G + 
Sbjct: 6   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65

Query: 77  ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA 136
            RR+   YY      + + D      +   ++ L  L  D A +N+  +++GNK D+ + 
Sbjct: 66  YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR-DHADSNIVIMLVGNKSDLRHL 124

Query: 137 ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
            +                      A +    L     S +      + FK +   I 
Sbjct: 125 RAVPTDEAR---------------AFAEKNNLSFIETSALDSTNVEEAFKNILTEIY 166

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 1e-10
 Identities = 34/187 (18%), Positives = 59/187 (31%), Gaps = 30/187 (16%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPT---------------QYPTSEELSIGKIKF 66
           K+L LG    GKTT L+   D +      T               Q P        K+  
Sbjct: 7   KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 66

Query: 67  KAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLV 126
           + +D  G +  R +   ++      + + D   ++ F   +  +  L ++    N   ++
Sbjct: 67  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 126

Query: 127 LGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFK 186
           +GNK D+P      E +                LAD     +  F  S           +
Sbjct: 127 IGNKADLPDQREVNERQAR-------------ELADKY--GIPYFETSAATGQNVEKAVE 171

Query: 187 WLSQYIK 193
            L   I 
Sbjct: 172 TLLDLIM 178

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 1e-09
 Identities = 31/176 (17%), Positives = 57/176 (32%), Gaps = 21/176 (11%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQP-----TQYPTSEELSIGKIKFKAFDLGGHQI 76
           KIL +G    GK++LL    D+                 +  +   K K   +D  G + 
Sbjct: 9   KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 68

Query: 77  ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA 136
            R +   YY     V+ + D   ++ F +    L+ L +     ++  +++GNKID    
Sbjct: 69  FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENR 128

Query: 137 ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192
             +                       +    +     S     G    F+ L + I
Sbjct: 129 EVDRNEGLKF----------------ARKHSMLFIEASAKTCDGVQCAFEELVEKI 168

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 2e-09
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 6/119 (5%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPT-----QYPTSEELSIGKIKFKAFDLGGHQI 76
           K + +G    GK+ LL    D+R                   +   +IK + +D  G + 
Sbjct: 5   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 64

Query: 77  ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY 135
            R + + YY      + + D   +E F      L+      + +N+  +++GNK D+  
Sbjct: 65  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDAR-QHSSSNMVIMLIGNKSDLES 122

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.4 bits (122), Expect = 4e-09
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSE-----ELSIGKIKFKAFDLGGHQI 76
           KIL +G  + GKT+ L    D+       +             +  +IK + +D  G + 
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66

Query: 77  ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELD 111
            R +   YY      + + D  ++E F   +    
Sbjct: 67  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWST 101

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 51.5 bits (122), Expect = 4e-09
 Identities = 31/176 (17%), Positives = 59/176 (33%), Gaps = 19/176 (10%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPT----QYPTSEELSIGKIKFKAFDLGGHQIA 77
           K++ +G    GK+ L      +  V+         Y     L   +++    D  G +  
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65

Query: 78  RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA 137
             +  +Y+   +  + +    + E FA +    + +L  +   NVPFL++GNK D+    
Sbjct: 66  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 125

Query: 138 SEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
                                N AD     +     S   +      F  L + I+
Sbjct: 126 QVSVEEAK-------------NRADQW--NVNYVETSAKTRANVDKVFFDLMREIR 166

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 6e-09
 Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 6/119 (5%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQ-----YPTSEELSIGKIKFKAFDLGGHQI 76
           KI+ +G    GKT L+           Q           + E++  K+K + +D  G + 
Sbjct: 7   KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 66

Query: 77  ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY 135
            R + + YY   +A++   D   +E F    + L   +   A   V  +++GNKID+  
Sbjct: 67  FRSITQSYYRSANALILTYDITCEESFRCLPEWLRE-IEQYASNKVITVLVGNKIDLAE 124

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.4 bits (119), Expect = 7e-09
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 6/120 (5%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDL------GGHQ 75
           KI+ +G  N GKT L +     R                   I  +   +      G  +
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 63

Query: 76  IARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY 135
             + + + YY  V AVV++ D  +   F      ++         ++P +++GNK D+  
Sbjct: 64  FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 123

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 2e-08
 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 6/119 (5%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPT-----QYPTSEELSIGKIKFKAFDLGGHQI 76
           K + +G    GK+ LLH   +++ +   P            E+S  KIK + +D  G + 
Sbjct: 6   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 65

Query: 77  ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY 135
            R V + YY      + + D   +  +      L     +    N   +++GNK D+  
Sbjct: 66  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR-NLTNPNTVIILIGNKADLEA 123

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 2e-08
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQ-----YPTSEELSIGKIKFKAFDLGGHQI 76
           K L +G    GK+ LLH   +++                   +    +K + +D  G + 
Sbjct: 7   KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66

Query: 77  ARRVWKDYYAKVDAVVYLVDAYDKERFAE 105
            R V + YY      + + D   +E +  
Sbjct: 67  FRSVTRSYYRGAAGALLVYDITSRETYNA 95

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 3e-08
 Identities = 28/179 (15%), Positives = 54/179 (30%), Gaps = 20/179 (11%)

Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPT----QYPTSEELSIGKIKFKAFDLGGH 74
            E K++ +G    GK+ L   L     V          Y     +          D  G 
Sbjct: 2   TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61

Query: 75  QIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP 134
           +    +   Y    +  + +    + + F +  +  + +   +   +VP +++GNK D+ 
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121

Query: 135 YAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
               E      L  S                  +     S   + G  D F  L + I+
Sbjct: 122 ARTVESRQAQDLARSYG----------------IPYIETSAKTRQGVEDAFYTLVREIR 164

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 3e-08
 Identities = 30/178 (16%), Positives = 53/178 (29%), Gaps = 22/178 (12%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSI------GKIKFKAFDLGGHQ 75
           K++ +G    GKT LL   KD   +          +  +        K+K + +D  G +
Sbjct: 8   KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67

Query: 76  IARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY 135
             R V   YY    A++ L D  +K  F   +  L  +           L+         
Sbjct: 68  RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 127

Query: 136 AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
              + E    L                +    L     S    +     F  +++ +K
Sbjct: 128 RVVKREDGEKL----------------AKEYGLPFMETSAKTGLNVDLAFTAIAKELK 169

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 6e-08
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 4/121 (3%)

Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ----YPTSEELSIGKIKFKAFDLGGH 74
           +E K++ LG    GK+ L         V+         Y    E+   +   +  D  G 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61

Query: 75  QIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP 134
           +    +   Y         +     +  F + +   + +L  +   +VP +++GNK D+ 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121

Query: 135 Y 135
            
Sbjct: 122 D 122

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 1e-07
 Identities = 26/177 (14%), Positives = 51/177 (28%), Gaps = 5/177 (2%)

Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ---YPTSEELSIGKIKFKAFDLGGHQ 75
           +  K + +G    GKT LL                    ++  +  GK           Q
Sbjct: 4   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63

Query: 76  IARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY 135
                 +        V  +  +       E+ +            N P +++G K+D+  
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123

Query: 136 AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192
                E      L+  T  +G   +A      ++   CS + + G    F    + +
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGL-AMAKEI-GAVKYLECSALTQRGLKTVFDEAIRAV 178

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 3e-07
 Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 6/118 (5%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLV-QHQPTQYPTSEELSI----GKIKFKAFDLGGHQI 76
           K++FLG  + GKT+L+     +     +Q T        ++      I+ + +D  G + 
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 77  ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP 134
            R +   Y     A V + D  +   F ++ K +D + + E  ++V  +++GNK D+ 
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRT-ERGSDVIIMLVGNKTDLA 118

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 5e-07
 Identities = 30/176 (17%), Positives = 64/176 (36%), Gaps = 7/176 (3%)

Query: 21  AKILFLGLDNAGKTTLLHMLKDERLV-QHQPT---QYPTSEELSIGKIKFKAFDLGGHQI 76
            K++ +G    GKT LL +   ++    + PT    Y    E+   +++   +D  G + 
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62

Query: 77  ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA 136
             R+    Y   D ++        +      ++    +      NVP +++GNK D+   
Sbjct: 63  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 121

Query: 137 ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192
                    +        +G+ ++A+          CS   K G  + F+  ++  
Sbjct: 122 EHTRRELAKMKQEPVKPEEGR-DMANRI-GAFGYMECSAKTKDGVREVFEMATRAA 175

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 1e-06
 Identities = 30/170 (17%), Positives = 52/170 (30%), Gaps = 5/170 (2%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSI---GKIKFKAFDLGGHQIAR 78
           K + +G    GKT LL    ++   +           +S+   GK           Q   
Sbjct: 11  KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY 70

Query: 79  RVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS 138
              +     +  V  +  +       ++ KE       E   NVPFL++G +ID+     
Sbjct: 71  DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPK 130

Query: 139 EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWL 188
                  +        +G+  LA           CS + + G    F   
Sbjct: 131 TLARLNDMKEKPICVEQGQ-KLAKEI-GACCYVECSALTQKGLKTVFDEA 178

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 1e-06
 Identities = 30/170 (17%), Positives = 50/170 (29%), Gaps = 5/170 (2%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLV-QHQPT--QYPTSEELSIGKIKFKAFDLGGHQIAR 78
           K + +G    GKT LL      +   ++ PT         +  G+           Q   
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64

Query: 79  RVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS 138
              +        V  +  +       E+ KE             PFL++G +ID+    S
Sbjct: 65  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124

Query: 139 EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWL 188
             E          T    +  LA       +   CS + + G  + F   
Sbjct: 125 TIEKLAKNKQKPITPETAE-KLARDLKAV-KYVECSALTQKGLKNVFDEA 172

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.9 bits (102), Expect = 2e-06
 Identities = 30/177 (16%), Positives = 65/177 (36%), Gaps = 18/177 (10%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPT-----QYPTSEELSIGKIKFKAFDLGGHQI 76
           K++ LG    GK++++         +++              ++   +KF+ +D  G + 
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 77  ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA 136
              +   YY    A + + D    + F +++  +   L ++A  ++   ++GNKID+   
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVK-ELHEQASKDIIIALVGNKIDMLQE 123

Query: 137 ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
             E ++                 LA+     L  F  S        D F  + + I 
Sbjct: 124 GGERKVAREE----------GEKLAEEK--GLLFFETSAKTGENVNDVFLGIGEKIP 168

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 4e-06
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGK-----IKFKAFDLGGHQI 76
           K++ LG    GKT+L+    + +      T    S            +    +D  G + 
Sbjct: 5   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64

Query: 77  ARRVWKDYYAKVDAVVYLVDAYDKERFAE 105
              +   YY   +  + + D  D++ F +
Sbjct: 65  FHALGPIYYRDSNGAILVYDITDEDSFQK 93

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 26/128 (20%), Positives = 51/128 (39%), Gaps = 8/128 (6%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGK-IKFKAFDLGGHQI 76
           K++ LG    GK++L++     +           ++   +    G  +  + +D  G + 
Sbjct: 8   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 67

Query: 77  ARRVWKDYYAKVDAVV---YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDI 133
            R +   +Y   D  +    + D+   +  +  KKE       +   + PF++LGNKIDI
Sbjct: 68  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 127

Query: 134 PYAASEEE 141
                  E
Sbjct: 128 SERQVSTE 135

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 2e-05
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPT-----QYPTSEELSIGKIKFKAFDLGGHQI 76
           K++ LG    GK++L+      +  + Q +         +  L    +KF+ +D  G + 
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 77  ARRVWKDYYAKVDAVVYLVDAYDKERFAESK 107
              +   YY    A + + D  ++E FA +K
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARAK 98

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.4 bits (93), Expect = 3e-05
 Identities = 29/141 (20%), Positives = 47/141 (33%), Gaps = 5/141 (3%)

Query: 21  AKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQYPTSEELSIGKIK---FKAFDLGGHQI 76
            KI+ +G    GKT LLH+   +     + PT +           +      +D  G   
Sbjct: 3   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 77  ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA 136
              V    Y   DAV+   D    E   +S  +       E   N   L++G K D+   
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETL-DSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD 121

Query: 137 ASEEELRYHLGLSNFTTGKGK 157
            S      +   +  +  +G 
Sbjct: 122 VSTLVELSNHRQTPVSYDQGA 142

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.7 bits (91), Expect = 5e-05
 Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 5/87 (5%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDL-----GGHQI 76
           K++ +G    GK++++         +               ++  +   L      G + 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 77  ARRVWKDYYAKVDAVVYLVDAYDKERF 103
              + K YY    A V +    D+E F
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESF 90

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (91), Expect = 6e-05
 Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 4/118 (3%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPT----QYPTSEELSIGKIKFKAFDLGGHQIA 77
           K++ +G    GK+ L      +  V          Y    E+          D  G +  
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 65

Query: 78  RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY 135
             + + Y    D  + +    DK  F    +    +L  +   + P +++ NK+D+ +
Sbjct: 66  SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (91), Expect = 6e-05
 Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQP-----TQYPTSEELSIGKIKFKAFDLGG 73
           +E K+  LG    GK++++    ++    +       +    + +      KF  +D  G
Sbjct: 3   RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 62

Query: 74  HQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKEL 110
            +  R +   YY    A + + D   +E F+  K  +
Sbjct: 63  LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWV 99

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 7e-05
 Identities = 25/180 (13%), Positives = 53/180 (29%), Gaps = 19/180 (10%)

Query: 18  QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIG----KIKFKAFDLGG 73
            +  K++ +G    GK+ L         V         S            +    D  G
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 63

Query: 74  HQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDI 133
            +    + + Y       + +    D++ F E  K    +L  +   + P +++GNK D+
Sbjct: 64  QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 123

Query: 134 PYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
                            F                +  F  S   ++   + F+ L + ++
Sbjct: 124 ESQRQVPRSEAS----AFGASHH-----------VAYFEASAKLRLNVDEAFEQLVRAVR 168

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 8e-05
 Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 3/119 (2%)

Query: 20  EAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR 78
           E K+   G    GK+ L+     +R + ++ PT   T    +    +  + ++       
Sbjct: 2   EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQE 61

Query: 79  RVWKD--YYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY 135
              +   +    +  V + D  D+  F E     + L   +   NV  +++GNK D+ +
Sbjct: 62  DTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (90), Expect = 9e-05
 Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 8/122 (6%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLV-QHQPT----QYPTSEELSIGKIKFKAFDLGGHQI 76
           K++ LG    GKT+L++   +++   Q++ T           +    +  + +D  G + 
Sbjct: 4   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 63

Query: 77  ARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALL---SDEALANVPFLVLGNKIDI 133
            + +   +Y   D  V + D      F       D  L   S     N PF+VLGNKID+
Sbjct: 64  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 123

Query: 134 PY 135
             
Sbjct: 124 EN 125

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.9 bits (89), Expect = 1e-04
 Identities = 28/180 (15%), Positives = 59/180 (32%), Gaps = 22/180 (12%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPT------QYPTSEELSIGKIKFKAFDLGGHQ 75
           K++ LG    GKT+L+H   +++  Q                         + +D  G +
Sbjct: 4   KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 63

Query: 76  IARRVWKDYYAKVDAVVYLVDAYDKERFAESKKE---LDALLSDEALANVPFLVLGNKID 132
             + +   +Y   D  V + D  +   F   K          +  +    PF++LGNKID
Sbjct: 64  RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 123

Query: 133 IPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192
              +      +                    ++  + +F+ S    +     F+ +++  
Sbjct: 124 AEESKKIVSEKSA-------------QELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 170

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 31/180 (17%), Positives = 60/180 (33%), Gaps = 24/180 (13%)

Query: 18  QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ-----YPTSEELSIGKIKFKAFDLG 72
           Q + K++ +G    GKTT +         +          +P     + G IKF  +D  
Sbjct: 1   QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTA 60

Query: 73  GHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKID 132
           G +    +   YY +    + + D   +  +         L+      N+P ++ GNK+D
Sbjct: 61  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVD 118

Query: 133 IPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 192
           I     + +        N                 L+ +  S      +   F WL++ +
Sbjct: 119 IKDRKVKAKSIVFHRKKN-----------------LQYYDISAKSNYNFEKPFLWLARKL 161

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.0 bits (87), Expect = 2e-04
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 13/95 (13%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLV----QHQPTQYPTSEELSIGKIKFKAFDLGG---- 73
           +++ +G  N GK+TLL+ L +E           T+   SEE+ I  I F+  D  G    
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61

Query: 74  --HQIARRVWKDYYAKV---DAVVYLVDAYDKERF 103
               + R   +    ++   D V++++DA      
Sbjct: 62  TNDLVERLGIERTLQEIEKADIVLFVLDASSPLDE 96

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 5e-04
 Identities = 22/121 (18%), Positives = 41/121 (33%), Gaps = 4/121 (3%)

Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIG----KIKFKAFDLGGH 74
           K  KI  LG  + GK++L     + + V         +    I     +   +  D  G 
Sbjct: 3   KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 62

Query: 75  QIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP 134
                  + Y   ++  + +      + F   K     LL       +P +++GNK D+ 
Sbjct: 63  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122

Query: 135 Y 135
            
Sbjct: 123 M 123

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 7e-04
 Identities = 18/121 (14%), Positives = 42/121 (34%), Gaps = 5/121 (4%)

Query: 20  EAKILFLGLDNAGKTTLLHMLKDERLV-QHQPT---QYPTSEELSIGKIKFKAFDLGGHQ 75
           + ++   G    GK++L+           + PT    Y             +  D  G  
Sbjct: 2   DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSH 61

Query: 76  IARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEA-LANVPFLVLGNKIDIP 134
               + +   +K  A + +     ++   E K   + +   +  + ++P +++GNK D  
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 135 Y 135
            
Sbjct: 122 P 122

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 4/123 (3%)

Query: 17  WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ----YPTSEELSIGKIKFKAFDLG 72
            Q++ +++ +G    GK+ L         V          Y     +     +    D  
Sbjct: 2   MQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTA 61

Query: 73  GHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKID 132
           G +    + + Y    +  + +    D+  F E  K    +L  +     P +++GNK D
Sbjct: 62  GQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKAD 121

Query: 133 IPY 135
           + +
Sbjct: 122 LDH 124

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 34.3 bits (77), Expect = 0.004
 Identities = 34/194 (17%), Positives = 66/194 (34%), Gaps = 33/194 (17%)

Query: 21  AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR-- 78
           A I+F G  N GK+TL++ L  ++ V+       T + + I     K  D+ G       
Sbjct: 1   ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGL 59

Query: 79  -------------RVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEAL------ 119
                           +D    +D  V +VD        +  ++   +  D         
Sbjct: 60  PKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE 119

Query: 120 ANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKM 179
            ++P +V  NK+D        +++    + NF   K +V L++ +         S     
Sbjct: 120 LDIPTIVAVNKLD--------KIKNVQEVINFLAEKFEVPLSEIDK---VFIPISAKFGD 168

Query: 180 GYGDGFKWLSQYIK 193
                   + + I+
Sbjct: 169 NIERLKNRIFEVIR 182

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (77), Expect = 0.004
 Identities = 7/30 (23%), Positives = 10/30 (33%)

Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPT 51
          K+L LG    GK+ L  +            
Sbjct: 3  KVLLLGAPGVGKSALARIFGGVEDGPEAEA 32

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	193
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	100.0
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	100.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.98
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.98
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.97
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.97
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.97
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.97
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.97
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.97
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.97
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.97
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.97
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.96
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.96
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.96
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.96
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.94
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.93
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.93
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.93
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.92
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.92
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.92
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.91
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.91
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.9
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.9
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.9
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.89
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.88
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.88
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.88
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.87
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.87
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.86
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.83
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.81
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.81
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.81
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.79
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.77
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.77
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.77
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.76
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.75
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.63
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.62
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.62
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.57
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.57
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.56
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.17
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.17
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.14
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.11
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.08
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.77
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.55
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.55
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.51
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.47
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.39
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.37
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.32
d1okkd2	207	GTPase domain of the signal recognition particle r	98.27
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.26
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.26
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.19
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.19
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.02
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.98
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.95
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.91
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.9
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.85
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.84
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.83
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.81
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.81
d1tuea_	205	Replication protein E1 helicase domain {Human papi	97.8
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.78
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.77
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.76
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.76
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.76
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.74
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.74
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.73
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.72
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.72
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.71
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.71
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.7
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.69
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.69
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.68
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.68
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.68
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.67
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.65
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.65
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.65
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.64
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.63
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.63
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.63
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.63
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.62
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.62
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.61
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.6
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.59
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.58
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.56
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.56
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.56
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.54
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.54
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.53
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.53
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.53
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.52
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.52
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.51
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.51
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.49
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.48
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.47
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.47
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.46
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.44
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.42
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.42
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.4
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.4
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.39
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.39
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.38
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.38
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.36
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.35
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.35
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.34
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	97.34
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.32
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.3
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.28
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.28
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.27
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	97.23
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.22
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.22
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	97.21
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.16
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.14
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.12
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.12
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.09
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.06
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.06
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	97.01
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.0
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	96.9
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.89
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.85
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.7
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.65
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.64
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.63
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.6
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.58
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.56
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.56
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.53
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.49
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.42
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.4
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.32
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.28
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.28
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.26
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.25
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.24
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	96.24
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	96.24
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	96.21
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.19
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.18
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.14
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.11
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.11
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.05
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.03
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.01
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	96.0
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.0
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.96
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.95
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.88
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.77
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.7
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.66
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.61
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.5
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.38
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.34
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.29
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.21
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	95.16
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	95.0
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	94.79
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.77
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.75
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	94.67
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.64
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.46
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	94.39
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.23
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.22
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	93.17
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	93.13
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	92.9
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	92.4
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	92.17
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	91.85
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	91.83
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	91.32
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	91.3
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	90.62
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	89.29
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	88.92
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	88.28
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	86.59
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	86.5
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	84.5
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	84.47
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.07
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	83.92
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.67
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	81.94
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	81.89
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	81.12
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	81.03
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	81.0
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	80.88
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	80.42

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=100.00  E-value=6.8e-37  Score=213.27  Aligned_cols=176  Identities=36%  Similarity=0.573  Sum_probs=154.6

Q ss_pred             HHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhh
Q 029437            5 DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDY   84 (193)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~   84 (193)
                      ++|..+++++-..++.+||+++|++|||||||++++.+..+....||.+.........+..+.+||++|++.++..+..+
T Consensus         2 ~~~~~~~~~l~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~   81 (182)
T d1moza_           2 NIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCY   81 (182)
T ss_dssp             HHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGT
T ss_pred             hhHHHHHHHHhCCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEEEEeeCCEEEEEEecccccccchhHHhh
Confidence            47888888887788899999999999999999999999999888899999999999999999999999999999999999


Q ss_pred             cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCC
Q 029437           85 YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSN  164 (193)
Q Consensus        85 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (193)
                      +..+|++++|+|++++.++.+...++...+......+.|+++++||+|+.......++.+.++...+            .
T Consensus        82 ~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~------------~  149 (182)
T d1moza_          82 YADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVEL------------K  149 (182)
T ss_dssp             TTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTC------------C
T ss_pred             hccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHH------------h
Confidence            9999999999999999999999999999887777788999999999999888888888888876552            1


Q ss_pred             CcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          165 VRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ...+.+++|||++|+|++++|+||.+.+
T Consensus       150 ~~~~~~~e~SA~~g~gv~e~~~~l~~~i  177 (182)
T d1moza_         150 DRSWSIVASSAIKGEGITEGLDWLIDVI  177 (182)
T ss_dssp             SSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred             hCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            1347899999999999999999998875

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=100.00  E-value=1.2e-35  Score=205.81  Aligned_cols=165  Identities=35%  Similarity=0.623  Sum_probs=147.4

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      ..++++||+++|++|||||||++++.+.++....++.+.+...+.+++..+.+||++|++.++..+..++..+|++++|+
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   91 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVI   91 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEE
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhccceeEEee
Confidence            45678999999999999999999999999988888888888889999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI  175 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  175 (193)
                      |++++.++.+...++..........++|+++++||+|+.......++.+.+.....            ....+.+++|||
T Consensus        92 d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~SA  159 (176)
T d1fzqa_          92 DSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTI------------RDRVWQIQSCSA  159 (176)
T ss_dssp             ETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGC------------CSSCEEEEECCT
T ss_pred             ccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHH------------HhcCCEEEEEeC
Confidence            99999999999999999887777778999999999999987777777777765441            124578999999


Q ss_pred             ecCCChhhHHHhhhhhc
Q 029437          176 VRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       176 ~~g~gv~el~~~i~~~~  192 (193)
                      ++|+|++|+|+||.+++
T Consensus       160 ~tg~gv~e~~~~l~~~i  176 (176)
T d1fzqa_         160 LTGEGVQDGMNWVCKNV  176 (176)
T ss_dssp             TTCTTHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHhcC
Confidence            99999999999999865

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=100.00  E-value=2e-35  Score=204.15  Aligned_cols=165  Identities=33%  Similarity=0.571  Sum_probs=148.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD   96 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d   96 (193)
                      .++++||+++|++|||||||++++....+....+|.+............+.+||+||...++..+..+++.++++++|+|
T Consensus         9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D   88 (173)
T d1e0sa_           9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD   88 (173)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEEE
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccceEEEEEe
Confidence            46679999999999999999999999998888889999888889999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeee
Q 029437           97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIV  176 (193)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  176 (193)
                      +++.+++..+..++...++.....+.|+++++||+|+.......++...++...+            ....+.+++|||+
T Consensus        89 ~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~------------~~~~~~~~e~SA~  156 (173)
T d1e0sa_          89 CADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRI------------RDRNWYVQPSCAT  156 (173)
T ss_dssp             TTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC------------CSSCEEEEECBTT
T ss_pred             cccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHH------------HhCCCEEEEeeCC
Confidence            9999999999999999988777789999999999999888888888888775551            1134679999999


Q ss_pred             cCCChhhHHHhhhhhcC
Q 029437          177 RKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       177 ~g~gv~el~~~i~~~~~  193 (193)
                      +|+||+|+|+||.+.+|
T Consensus       157 tg~gv~e~~~~l~~~~k  173 (173)
T d1e0sa_         157 SGDGLYEGLTWLTSNYK  173 (173)
T ss_dssp             TTBTHHHHHHHHHHHCC
T ss_pred             CCcCHHHHHHHHHHhcC
Confidence            99999999999998875

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=100.00  E-value=2.7e-35  Score=202.01  Aligned_cols=162  Identities=32%  Similarity=0.565  Sum_probs=144.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAY   98 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~   98 (193)
                      +++||+++|++|||||||++++.+..+....||.+.....+...+..+.+||+||++.++.....++..++++++|+|++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   80 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA   80 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETT
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecc
Confidence            36899999999999999999999999888889999999999999999999999999999999899999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecC
Q 029437           99 DKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRK  178 (193)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  178 (193)
                      +..++.....++...+......+.|+++++||+|+......++....+....+            ....+.+++|||++|
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~g  148 (165)
T d1ksha_          81 DRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSI------------RSHHWRIQGCSAVTG  148 (165)
T ss_dssp             CGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC------------CSSCEEEEECCTTTC
T ss_pred             cchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhh------------hcCCCEEEEEECCCC
Confidence            99999999999998887777789999999999999877788877776654441            113478999999999


Q ss_pred             CChhhHHHhhhhhc
Q 029437          179 MGYGDGFKWLSQYI  192 (193)
Q Consensus       179 ~gv~el~~~i~~~~  192 (193)
                      .|++++|+||.+++
T Consensus       149 ~gv~e~~~~l~~~i  162 (165)
T d1ksha_         149 EDLLPGIDWLLDDI  162 (165)
T ss_dssp             TTHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999999998765

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=100.00  E-value=4e-35  Score=200.98  Aligned_cols=163  Identities=34%  Similarity=0.546  Sum_probs=145.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA   97 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~   97 (193)
                      +++||+++|++|||||||++++...++.. ..||.+.....+..++..+.+||+||+..+...+..++..++++++|+|+
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   80 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDA   80 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEET
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhccccc
Confidence            36899999999999999999999988765 56788988888999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeec
Q 029437           98 YDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVR  177 (193)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  177 (193)
                      ++.+++.....++..++.....+++|+++++||+|+.......++.+.++....            ......+++|||++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~------------~~~~~~~~e~Sa~~  148 (164)
T d1zd9a1          81 ADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAI------------QDREICCYSISCKE  148 (164)
T ss_dssp             TCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGC------------CSSCEEEEECCTTT
T ss_pred             ccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHH------------HhCCCEEEEEeCcC
Confidence            999999999999999988877789999999999999877788888888775552            11356889999999


Q ss_pred             CCChhhHHHhhhhhcC
Q 029437          178 KMGYGDGFKWLSQYIK  193 (193)
Q Consensus       178 g~gv~el~~~i~~~~~  193 (193)
                      |.|++++|+||.+++|
T Consensus       149 g~gv~e~~~~l~~~~k  164 (164)
T d1zd9a1         149 KDNIDITLQWLIQHSK  164 (164)
T ss_dssp             CTTHHHHHHHHHHTCC
T ss_pred             CcCHHHHHHHHHHccC
Confidence            9999999999999875

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-33  Score=191.29  Aligned_cols=155  Identities=19%  Similarity=0.175  Sum_probs=110.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce-eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTS-EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA   97 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~   97 (193)
                      +||+++|++|||||||++++.+..+....++..... ..+..+  .+.+.+||++|++.+..+...+++.+|++++|+|+
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~   81 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSV   81 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC---------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEET
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceeccc
Confidence            689999999999999999999888766555544332 233333  47899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437           98 YDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI  175 (193)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  175 (193)
                      +++.+++.+..|+..+.......++|+++|+||+|+..  ..+..+...... .                ..+++++|||
T Consensus        82 t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~-~----------------~~~~~~e~Sa  144 (168)
T d2gjsa1          82 TDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-V----------------FDCKFIETSA  144 (168)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHH-H----------------HTSEEEECBT
T ss_pred             cccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHH-h----------------cCCEEEEEeC
Confidence            99999999999999887665667899999999999873  333333222111 0                1246899999


Q ss_pred             ecCCChhhHHHhhhhhc
Q 029437          176 VRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       176 ~~g~gv~el~~~i~~~~  192 (193)
                      ++|.|++++|++|.+.+
T Consensus       145 k~~~~v~~~f~~l~~~i  161 (168)
T d2gjsa1         145 ALHHNVQALFEGVVRQI  161 (168)
T ss_dssp             TTTBSHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHH
Confidence            99999999999998765

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=100.00  E-value=1.1e-31  Score=182.62  Aligned_cols=160  Identities=33%  Similarity=0.585  Sum_probs=140.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCCh
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDK  100 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~  100 (193)
                      +||+++|++|||||||++++.+.++....++............+.+.+||++|...+......++..++++++++|..++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   80 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecCh
Confidence            58999999999999999999999988777777777777888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCC
Q 029437          101 ERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG  180 (193)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  180 (193)
                      .++.....++.+.+........|+++++||.|+.......++.........            ....+.+++|||++|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~SAktg~g  148 (160)
T d1r8sa_          81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL------------RHRNWYIQATCATSGDG  148 (160)
T ss_dssp             GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC------------SSCCEEEEECBTTTTBT
T ss_pred             HHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHH------------hhCCCEEEEeECCCCCC
Confidence            999999999999988777789999999999999887777777766655441            11347899999999999


Q ss_pred             hhhHHHhhhhhc
Q 029437          181 YGDGFKWLSQYI  192 (193)
Q Consensus       181 v~el~~~i~~~~  192 (193)
                      ++++|+||.+++
T Consensus       149 i~e~~~~l~~~l  160 (160)
T d1r8sa_         149 LYEGLDWLSNQL  160 (160)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcC
Confidence            999999999875

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-33  Score=192.08  Aligned_cols=160  Identities=17%  Similarity=0.225  Sum_probs=127.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCccee-EE--EeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTSE-EL--SIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~~-~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      |+++||+++|++|||||||++++..+.|... .++.+.... .+  ......+.+||++|+..+...++.+++.+|++++
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            4678999999999999999999999998764 455543322 22  2345789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      |+|++++++++++..|+..+......++.|+++|+||+|+..  ....++...... ..               ....++
T Consensus        81 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~-~~---------------~~~~~~  144 (167)
T d1c1ya_          81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR-QW---------------CNCAFL  144 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-HT---------------TSCEEE
T ss_pred             eeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHH-Hh---------------CCCEEE
Confidence            999999999999999999887655557899999999999973  233333222111 11               235789


Q ss_pred             EeeeecCCChhhHHHhhhhhcC
Q 029437          172 MCSIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       172 ~~Sa~~g~gv~el~~~i~~~~~  193 (193)
                      +|||++|.||+++|++|.+.++
T Consensus       145 e~Sak~g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         145 ESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHT
T ss_pred             EEcCCCCcCHHHHHHHHHHHhc
Confidence            9999999999999999998763

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=100.00  E-value=4.9e-31  Score=183.34  Aligned_cols=184  Identities=62%  Similarity=1.043  Sum_probs=150.8

Q ss_pred             HHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCC
Q 029437           10 VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVD   89 (193)
Q Consensus        10 ~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d   89 (193)
                      ++..++..+++.||+++|++|||||||++++.+..+....|+...+...+..++.....||+.+...+...........+
T Consensus         3 ~~~~~~~~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (186)
T d1f6ba_           3 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAIN   82 (186)
T ss_dssp             HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCS
T ss_pred             hHHhccccCCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeEEEecccccccccccchhhhhhHHhhhhcccc
Confidence            45666777889999999999999999999999999888888888888899999999999999999998888888899999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           90 AVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        90 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++++++|+++...+......+..........+.|+++++||.|+......+++.+.+.....................+.
T Consensus        83 ~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (186)
T d1f6ba_          83 GIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLE  162 (186)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEE
T ss_pred             eeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCE
Confidence            99999999999988888887777776667789999999999999988888888888887665554444444444556789


Q ss_pred             EEEeeeecCCChhhHHHhhhhhcC
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~~  193 (193)
                      +++|||++|+|++|+|+||.+++.
T Consensus       163 ~~~~SA~tg~Gi~e~~~~l~~~i~  186 (186)
T d1f6ba_         163 VFMCSVLKRQGYGEGFRWMAQYID  186 (186)
T ss_dssp             EEECBTTTTBSHHHHHHHHHTTCC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHhhC
Confidence            999999999999999999999874

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.98  E-value=1.7e-32  Score=188.53  Aligned_cols=157  Identities=20%  Similarity=0.303  Sum_probs=123.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL   94 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v   94 (193)
                      +-+||+++|++|||||||++++..++|.. +.||.+... ..+..+  .+.+.+||++|+..+..+...+++.+|++++|
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence            34799999999999999999999988765 456765432 233333  47889999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      +|++++++++.+..|+..+......++.|+++|+||+|+..  ..+.++..+....                 ..+.+++
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~e  145 (168)
T d1u8za_          83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQ-----------------WNVNYVE  145 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTCEEEE
T ss_pred             eeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHH-----------------cCCeEEE
Confidence            99999999999999998887655567899999999999863  3444443332211                 1256899


Q ss_pred             eeeecCCChhhHHHhhhhhc
Q 029437          173 CSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~~  192 (193)
                      |||++|.||+++|++|.+.+
T Consensus       146 ~Sak~g~gv~e~f~~l~~~i  165 (168)
T d1u8za_         146 TSAKTRANVDKVFFDLMREI  165 (168)
T ss_dssp             CCTTTCTTHHHHHHHHHHHH
T ss_pred             EcCCCCcCHHHHHHHHHHHH
Confidence            99999999999999998875

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.7e-32  Score=187.32  Aligned_cols=158  Identities=18%  Similarity=0.252  Sum_probs=125.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce-eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTS-EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      |+++||+++|++|||||||++++.++.+... .++.+... .....+  ...+.+||++|+..+......+++.+|++++
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            5689999999999999999999999887764 44554322 222333  4788999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      |+|+++++++.++..|+..+......+++|+++|+||+|+..  ....++...... .                ..++++
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~~~  143 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE-E----------------WGCPFM  143 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-H----------------HTSCEE
T ss_pred             eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHH-H----------------cCCeEE
Confidence            999999999999999999887655567899999999999873  333333221111 0                123579


Q ss_pred             EeeeecCCChhhHHHhhhhhc
Q 029437          172 MCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       172 ~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +|||++|.|++++|++|.+++
T Consensus       144 e~Sak~g~~i~e~f~~i~~~i  164 (167)
T d1kaoa_         144 ETSAKSKTMVDELFAEIVRQM  164 (167)
T ss_dssp             EECTTCHHHHHHHHHHHHHHH
T ss_pred             EECCCCCcCHHHHHHHHHHHH
Confidence            999999999999999998865

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.8e-32  Score=188.68  Aligned_cols=154  Identities=19%  Similarity=0.325  Sum_probs=119.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEe----CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELSI----GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL   94 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v   94 (193)
                      .+||+++|++|||||||++++..+.+.. ..||.+........    ....+.+||++|+..+..++..+++++|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            4799999999999999999999988765 44677654433332    358899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEee
Q 029437           95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS  174 (193)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  174 (193)
                      +|++++++++++..|+......  .+++|+++|+||+|+......++.......                 ..+++++||
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~-----------------~~~~~~e~S  143 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHRK-----------------KNLQYYDIS  143 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHH--HCSCCEEEEEECCCCSCSCCTTTSHHHHSS-----------------CSSEEEEEB
T ss_pred             cccccccccchhHHHHHHHhhc--cCCCceeeecchhhhhhhhhhhHHHHHHHH-----------------cCCEEEEEe
Confidence            9999999999999999887643  358999999999999754332221111111                 235789999


Q ss_pred             eecCCChhhHHHhhhhhc
Q 029437          175 IVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       175 a~~g~gv~el~~~i~~~~  192 (193)
                      |++|.|++++|++|.+.+
T Consensus       144 ak~~~~v~e~f~~l~~~l  161 (170)
T d1i2ma_         144 AKSNYNFEKPFLWLARKL  161 (170)
T ss_dssp             TTTTBTTTHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999999998754

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.98  E-value=5.5e-31  Score=182.13  Aligned_cols=164  Identities=30%  Similarity=0.572  Sum_probs=141.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA   97 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~   97 (193)
                      ++++||+|+|.+|||||||++++.+.++....++.+.........+..+.+||+++....+......+..++++++++|.
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d~   92 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDS   92 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEET
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEEeecceEEEEeccccccccccchhhhhccceeeeeeccc
Confidence            56689999999999999999999999998888888888888889999999999999999888888889999999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeec
Q 029437           98 YDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVR  177 (193)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  177 (193)
                      ++..++......+............|+++++||+|+.......++.+.+.....            ....+++++|||++
T Consensus        93 ~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~Sa~t  160 (177)
T d1zj6a1          93 TDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSI------------KDHQWHIQACCALT  160 (177)
T ss_dssp             TCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGC------------CSSCEEEEECBTTT
T ss_pred             ccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhh------------HhcCCEEEEEeCCC
Confidence            999998888877777777666789999999999999887777888777765541            12457899999999


Q ss_pred             CCChhhHHHhhhhhcC
Q 029437          178 KMGYGDGFKWLSQYIK  193 (193)
Q Consensus       178 g~gv~el~~~i~~~~~  193 (193)
                      |+|++|+++||.+++|
T Consensus       161 g~Gi~e~~~~L~~~lk  176 (177)
T d1zj6a1         161 GEGLCQGLEWMMSRLK  176 (177)
T ss_dssp             TBTHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHhC
Confidence            9999999999999875

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.5e-32  Score=185.81  Aligned_cols=158  Identities=17%  Similarity=0.267  Sum_probs=125.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCCc-ceeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQYP-TSEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~t~~~-~~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      .+.+||+++|++|||||||++++.+..+.... +|... ....+..+  .+.+.+||++|+..+...+..+++.+|++++
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~   83 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLL   83 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEE
T ss_pred             CCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeeee
Confidence            45689999999999999999999998887643 33322 22334444  4678899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      |+|++++.++..+..|+..+.......+.|+++|+||+|+..  ....++.......                 ..+.++
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~  146 (173)
T d2fn4a1          84 VFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGAS-----------------HHVAYF  146 (173)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEEE
T ss_pred             ecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHh-----------------cCCEEE
Confidence            999999999999999998887655557899999999999863  3333332222211                 125689


Q ss_pred             EeeeecCCChhhHHHhhhhhc
Q 029437          172 MCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       172 ~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +|||++|.||+++|++|.+.+
T Consensus       147 e~Sak~g~gv~e~f~~l~~~i  167 (173)
T d2fn4a1         147 EASAKLRLNVDEAFEQLVRAV  167 (173)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEeCCCCcCHHHHHHHHHHHH
Confidence            999999999999999998865

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9e-32  Score=184.49  Aligned_cols=158  Identities=18%  Similarity=0.285  Sum_probs=125.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcceeE-EEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTSEE-LSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~~~-~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      |+++||+++|++|||||||++++.++.+... .++.+..... ...  ....+.+||++|.+.+....+.++..++++++
T Consensus         1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            4578999999999999999999999887764 4455433222 222  34789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      |+|++++.+++.+..|+..+.......++|+++++||+|+... ...++.. ++...                ..+++++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~----------------~~~~~~e  143 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQ-DLARS----------------YGIPYIE  143 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHH-HHHHH----------------HTCCEEE
T ss_pred             eecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHH-HHHHH----------------hCCeEEE
Confidence            9999999999999999888866555568999999999999743 3333322 22111                1245799


Q ss_pred             eeeecCCChhhHHHhhhhhc
Q 029437          173 CSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~~  192 (193)
                      |||++|.||+++|++|.+++
T Consensus       144 ~Sak~g~gi~e~f~~i~~~i  163 (166)
T d1ctqa_         144 TSAKTRQGVEDAFYTLVREI  163 (166)
T ss_dssp             CCTTTCTTHHHHHHHHHHHH
T ss_pred             EcCCCCcCHHHHHHHHHHHH
Confidence            99999999999999998876

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3e-31  Score=182.01  Aligned_cols=158  Identities=19%  Similarity=0.215  Sum_probs=125.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcceeEEE--eC--CEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTSEELS--IG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~~~~~--~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      ++++||+++|++|||||||++++...+|... .+|.........  ..  ...+.+||++|++.+..+...++..+|+++
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            5678999999999999999999999988764 455555443322  22  356789999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      +|+|+++++++..+..|+..... ....+.|+++|+||.|+..  ....++..+....                 ..+.+
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~  143 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQ-HGPPSIVVAIAGNKCDLTDVREVMERDAKDYADS-----------------IHAIF  143 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHH-HSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCEE
T ss_pred             EEeeechhhhhhhHHHhhhhhhh-ccCCcceEEEecccchhccccchhHHHHHHHHHH-----------------cCCEE
Confidence            99999999999999998877654 3346899999999999973  3444443322211                 12578


Q ss_pred             EEeeeecCCChhhHHHhhhhhcC
Q 029437          171 FMCSIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       171 ~~~Sa~~g~gv~el~~~i~~~~~  193 (193)
                      ++|||++|.||+++|.+|.++++
T Consensus       144 ~e~SAk~~~nV~e~f~~l~~~i~  166 (167)
T d1z0ja1         144 VETSAKNAININELFIEISRRIP  166 (167)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHCC
T ss_pred             EEEecCCCCCHHHHHHHHHHhCC
Confidence            99999999999999999999874

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-32  Score=187.84  Aligned_cols=157  Identities=20%  Similarity=0.223  Sum_probs=126.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL   94 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v   94 (193)
                      +.+||+|+|++|||||||++++.+..|.. ..||.+... ..+..+  .+.+.+||++|...+..+...++..+|++++|
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv   82 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILV   82 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhhh
Confidence            45799999999999999999999888775 456766542 233444  46789999999999988888899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      +|+++++++..+..|+..+.+.....++|+++++||+|+..  ..+.++...... .                ..+.+++
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~-~----------------~~~~~~e  145 (167)
T d1xtqa1          83 YSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE-S----------------WNAAFLE  145 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-H----------------HTCEEEE
T ss_pred             cccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHH-H----------------cCCEEEE
Confidence            99999999999999999887665667899999999999863  344444322111 0                1246799


Q ss_pred             eeeecCCChhhHHHhhhhhc
Q 029437          173 CSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~~  192 (193)
                      |||++|.||+++|+.|.+.+
T Consensus       146 ~Sak~~~~v~~~f~~li~~~  165 (167)
T d1xtqa1         146 SSAKENQTAVDVFRRIILEA  165 (167)
T ss_dssp             CCTTCHHHHHHHHHHHHHHH
T ss_pred             EecCCCCCHHHHHHHHHHHh
Confidence            99999999999999988765

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=3.1e-31  Score=182.33  Aligned_cols=158  Identities=22%  Similarity=0.298  Sum_probs=123.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce--eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      +..-+||+++|++|||||||++++.+.++... .++.+...  ..+...  ...+.+|||||++.+..+++.+++.+|++
T Consensus         2 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~   81 (169)
T d3raba_           2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   81 (169)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEE
T ss_pred             CCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            34568999999999999999999998887653 44554333  233333  36899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      |+|+|+++++++.....++..... ....+.|+++++||.|+..  ....++...... .                ..++
T Consensus        82 ilv~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~-~----------------~~~~  143 (169)
T d3raba_          82 ILMYDITNEESFNAVQDWSTQIKT-YSWDNAQVLLVGNKCDMEDERVVSSERGRQLAD-H----------------LGFE  143 (169)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHH-HCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHH-H----------------HTCE
T ss_pred             EEEEECccchhhhhhhhhhhhhhc-ccCCcceEEEEEeecccccccccchhhhHHHHH-H----------------cCCE
Confidence            999999999999999888876643 3456899999999999873  334444322111 0                1246


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++|||++|.|++++|++|.+.+
T Consensus       144 ~~e~Sak~g~gv~e~f~~l~~~i  166 (169)
T d3raba_         144 FFEASAKDNINVKQTFERLVDVI  166 (169)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEecCCCCcCHHHHHHHHHHHH
Confidence            89999999999999999998764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.1e-31  Score=180.82  Aligned_cols=154  Identities=20%  Similarity=0.240  Sum_probs=123.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcceeEE--Ee--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTSEEL--SI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~~~~--~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      +||+++|++|||||||++++.+.++... .++.+......  ..  ..+.+.+||++|++.+...+..++..+|++++|+
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            5899999999999999999999887753 44554443322  22  3478999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      |++++.++.++..|+..+... ..++.|+++|+||+|+..  ....++.......                 ..+.+++|
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~e~  142 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKE-----------------LNVMFIET  142 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHH-HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCEEEEC
T ss_pred             ccccccchhhhHhhHHHHHHh-cCCCceEEEEecccchhhhhhhhHHHHHHHHHH-----------------cCCEEEEe
Confidence            999999999999999987543 336899999999999863  3343333222211                 12468999


Q ss_pred             eeecCCChhhHHHhhhhhc
Q 029437          174 SIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~~  192 (193)
                      ||++|.||+++|++|.+++
T Consensus       143 SAk~g~~v~e~f~~i~~~l  161 (164)
T d1yzqa1         143 SAKAGYNVKQLFRRVAAAL  161 (164)
T ss_dssp             CTTTCTTHHHHHHHHHHHS
T ss_pred             cCCCCcCHHHHHHHHHHhh
Confidence            9999999999999999876

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-31  Score=184.41  Aligned_cols=159  Identities=18%  Similarity=0.270  Sum_probs=123.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc-eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPT-SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~-~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      +..++||+|+|++|||||||++++..+.+... .||.+.. ...+..+  .+.+.+||++|...+......++..+|+++
T Consensus         2 m~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (171)
T d2erya1           2 MQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFL   81 (171)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEE
Confidence            34568999999999999999999999887653 4555432 2333333  368999999999999999899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      +|+|.++++++..+..|+..+.........|+++++||+|+..  ....++.......                 ..+++
T Consensus        82 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~  144 (171)
T d2erya1          82 LVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQ-----------------LKVTY  144 (171)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHH-----------------TTCEE
T ss_pred             EeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHH-----------------cCCEE
Confidence            9999999999999999998887655567899999999999873  3444443332211                 12578


Q ss_pred             EEeeeecCCChhhHHHhhhhhc
Q 029437          171 FMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       171 ~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++|||++|.||+++|+.|.+.+
T Consensus       145 ~e~Sak~~~~i~e~f~~l~~~i  166 (171)
T d2erya1         145 MEASAKIRMNVDQAFHELVRVI  166 (171)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEcCCCCcCHHHHHHHHHHHH
Confidence            9999999999999999998765

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-32  Score=189.56  Aligned_cols=170  Identities=16%  Similarity=0.256  Sum_probs=123.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee-EEE--eCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE-ELS--IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      +.||+|+|++|+|||||++++....|.. ..||.+.... ...  .....+.+||++|++.+..++..+++.+|++++|+
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF   81 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence            3689999999999999999999998776 3456543321 222  23468999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI  175 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  175 (193)
                      |++++++|++...++...+... .+++|+++++||+|+.......+.............. ...+++. .....+++|||
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e-~~~~a~~-~~~~~~~E~SA  158 (177)
T d1kmqa_          82 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEE-GRDMANR-IGAFGYMECSA  158 (177)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHH-HHHHHHH-TTCSEEEECCT
T ss_pred             ccchhHHHHHHHHHHHHHHHHh-CCCCceEEeeecccccchhhHHHHHHHhhcccccHHH-HHHHHHH-cCCcEEEEecC
Confidence            9999999999998888876643 3689999999999997432222211111111110000 0000000 12357899999


Q ss_pred             ecCCChhhHHHhhhhhc
Q 029437          176 VRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       176 ~~g~gv~el~~~i~~~~  192 (193)
                      ++|.||+++|+.|.+++
T Consensus       159 kt~~gi~e~F~~i~~~~  175 (177)
T d1kmqa_         159 KTKDGVREVFEMATRAA  175 (177)
T ss_dssp             TTCTTHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHH
Confidence            99999999999998753

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.3e-31  Score=179.92  Aligned_cols=156  Identities=20%  Similarity=0.253  Sum_probs=123.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCCcc--eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQYPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      .-+||+|+|++|+|||||++++.+.++.... ++....  ......+  .+.+.+||++|++.+..++..+++.+|++++
T Consensus         3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~il   82 (166)
T d1z0fa1           3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   82 (166)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEE
Confidence            4589999999999999999999998877643 333333  2333344  4689999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC--CCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP--YAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      |+|++++++++.+..++..+.+ ......|+++++||.|+.  .....++.......                 ..++++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~  144 (166)
T d1z0fa1          83 VYDITRRSTYNHLSSWLTDARN-LTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE-----------------NGLLFL  144 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCEEE
T ss_pred             EeccCchHHHHHHHHHHHHHHh-hccccceEEEEcccccchhhcccHHHHHHHHHHH-----------------cCCEEE
Confidence            9999999999999998887754 344689999999999986  23333333222211                 125789


Q ss_pred             EeeeecCCChhhHHHhhhhhc
Q 029437          172 MCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       172 ~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +|||++|.||+++|++|.+.+
T Consensus       145 e~Saktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         145 EASAKTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHh
Confidence            999999999999999999876

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.7e-31  Score=181.14  Aligned_cols=158  Identities=20%  Similarity=0.260  Sum_probs=126.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcceeEE--EeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTSEEL--SIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~~~~--~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      -..+||+++|++|||||||++++...++... .++.+......  ...  ...+.+||++|++.+..+++.+++.+|+++
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   83 (170)
T d1r2qa_           4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             eeEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEE
Confidence            3568999999999999999999999887754 45555544332  232  378999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      +|+|.++++++.+...++..+... ..++.|+++++||+|+..  ..+.++.......                 ..+++
T Consensus        84 lv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~-----------------~~~~~  145 (170)
T d1r2qa_          84 VVYDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSYADD-----------------NSLLF  145 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEE
T ss_pred             EEeccchhhHHHHHHHHhhhhhhc-cCCCceEEeecccccccccccccHHHHHHHHHh-----------------cCCEE
Confidence            999999999999999988887543 346899999999999873  3444433222111                 22578


Q ss_pred             EEeeeecCCChhhHHHhhhhhcC
Q 029437          171 FMCSIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       171 ~~~Sa~~g~gv~el~~~i~~~~~  193 (193)
                      ++|||++|.||+++|++|.+.+.
T Consensus       146 ~e~SAk~g~~V~e~f~~l~~~i~  168 (170)
T d1r2qa_         146 METSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             EECCTTTCTTHHHHHHHHHHTSC
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999999998764

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3e-31  Score=182.70  Aligned_cols=157  Identities=15%  Similarity=0.152  Sum_probs=122.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee-EEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE-ELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      ++||+++|++|||||||++++.+..+.. +.||.+.... ....+  .+.+.+||++|++.+......++..+|++++|+
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~   81 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   81 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEEe
Confidence            5899999999999999999999988775 4567664432 22333  367889999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcC-CCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           96 DAYDKERFAESKKELDALLSD-EALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~-~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      |+++++++.++..|+..+... ....++|+++|+||+|+..  ....++..+... .                ..+++++
T Consensus        82 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~-~----------------~~~~~~e  144 (171)
T d2erxa1          82 SITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALAR-T----------------WKCAFME  144 (171)
T ss_dssp             ETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHH-H----------------HTCEEEE
T ss_pred             ecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHH-H----------------cCCeEEE
Confidence            999999999999998877542 2346899999999999863  344443322111 1                1256899


Q ss_pred             eeeecCCChhhHHHhhhhhcC
Q 029437          173 CSIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~~~  193 (193)
                      |||++|.||+++|+.|.+.++
T Consensus       145 ~Sak~~~~v~e~f~~l~~~~~  165 (171)
T d2erxa1         145 TSAKLNHNVKELFQELLNLEK  165 (171)
T ss_dssp             CBTTTTBSHHHHHHHHHHTCC
T ss_pred             EcCCCCcCHHHHHHHHHHHHH
Confidence            999999999999999987653

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=4.2e-31  Score=181.62  Aligned_cols=157  Identities=16%  Similarity=0.194  Sum_probs=124.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL   94 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v   94 (193)
                      +.+||+++|++|||||||++++.+..+.+ ..||.+... ..+..  ..+.+.+||++|++.+..+...+++.+|++++|
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence            46899999999999999999999988765 345554322 22333  347889999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      +|+++++++.++..|+..+.+.....+.|+++++||+|+..  ..+.++..+....                 ..+.+++
T Consensus        83 ~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~-----------------~~~~~~e  145 (169)
T d1x1ra1          83 YSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATK-----------------YNIPYIE  145 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHH-----------------HTCCEEE
T ss_pred             cccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHH-----------------cCCEEEE
Confidence            99999999999999999887655556899999999999874  3444443222211                 1145799


Q ss_pred             eeeecCC-ChhhHHHhhhhhc
Q 029437          173 CSIVRKM-GYGDGFKWLSQYI  192 (193)
Q Consensus       173 ~Sa~~g~-gv~el~~~i~~~~  192 (193)
                      |||++|. ||+++|+.|.+.+
T Consensus       146 ~Sak~~~~nV~~~F~~l~~~i  166 (169)
T d1x1ra1         146 TSAKDPPLNVDKTFHDLVRVI  166 (169)
T ss_dssp             EBCSSSCBSHHHHHHHHHHHH
T ss_pred             EcCCCCCcCHHHHHHHHHHHH
Confidence            9999886 9999999998765

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.9e-31  Score=182.50  Aligned_cols=172  Identities=20%  Similarity=0.259  Sum_probs=124.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeE-EEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEE-LSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      ..-+||+|+|++|||||||++++..+.|.. ..||....... +..  ..+.+.+||++|++.+..++..+++.+|++++
T Consensus         7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~il   86 (185)
T d2atxa1           7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI   86 (185)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceeee
Confidence            466899999999999999999999988775 44666543332 222  34789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      |+|++++++|+++..++...++.. .++.|+++|+||+|+.......+............... ..+++ ..+.+.+++|
T Consensus        87 v~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~-~~~a~-~~~~~~~~E~  163 (185)
T d2atxa1          87 CFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQG-QKLAK-EIGACCYVEC  163 (185)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHH-HHHHH-HHTCSCEEEC
T ss_pred             ccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHH-HHHHH-HcCCCEEEEe
Confidence            999999999999988888877643 46899999999999974322221111111111000000 00000 0023568999


Q ss_pred             eeecCCChhhHHHhhhhhc
Q 029437          174 SIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~~  192 (193)
                      ||++|.||+++|+.+.+++
T Consensus       164 SAk~~~gv~e~F~~li~~i  182 (185)
T d2atxa1         164 SALTQKGLKTVFDEAIIAI  182 (185)
T ss_dssp             CTTTCTTHHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHH
Confidence            9999999999999988764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.6e-31  Score=181.74  Aligned_cols=157  Identities=20%  Similarity=0.205  Sum_probs=122.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      ...+||+++|++|||||||++++....+... .++...  ....+...+  +.+.+|||||++.+..+++.+++.+++++
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i   82 (171)
T d2ew1a1           3 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI   82 (171)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEE
Confidence            3458999999999999999999999887653 344443  333444443  67899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      +|+|.+++.++....+++..+... ...+.|+++++||+|+..  ....++.......                 ..+++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~-----------------~~~~~  144 (171)
T d2ew1a1          83 LTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFSEA-----------------QDMYY  144 (171)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHH-----------------HTCCE
T ss_pred             Eeeecccchhhhhhhhhhhhhccc-ccccccEEEEEeecccccccchhhhHHHHHHHh-----------------CCCEE
Confidence            999999999999999999887543 345899999999999863  3334433221110                 12457


Q ss_pred             EEeeeecCCChhhHHHhhhhhc
Q 029437          171 FMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       171 ~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++|||++|.||+++|++|.+.+
T Consensus       145 ~~~SAktg~gV~e~f~~l~~~l  166 (171)
T d2ew1a1         145 LETSAKESDNVEKLFLDLACRL  166 (171)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEccCCCCCHHHHHHHHHHHH
Confidence            9999999999999999987653

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.6e-31  Score=181.62  Aligned_cols=155  Identities=20%  Similarity=0.260  Sum_probs=117.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEE--EeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEEL--SIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL   94 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~--~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v   94 (193)
                      .+||+++|++|||||||++++..+.|.. ..||.+......  ..+  ...+.+||++|+..+..++..+++++|++++|
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   82 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILV   82 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEE
Confidence            5799999999999999999999988876 445665544332  222  47899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      +|++++++++++..|+..+.. ......|+++++||+|+..  ..+.++.......                 ..+++++
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~-~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~-----------------~~~~~~e  144 (167)
T d1z08a1          83 YDITDEDSFQKVKNWVKELRK-MLGNEICLCIVGNKIDLEKERHVSIQEAESYAES-----------------VGAKHYH  144 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHH-HHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEEEE
T ss_pred             EeCCchhHHHhhhhhhhhccc-ccccccceeeeccccccccccccchHHHHHHHHH-----------------cCCeEEE
Confidence            999999999999999887643 2346889999999999873  4455554332211                 1257899


Q ss_pred             eeeecCCChhhHHHhhhhhc
Q 029437          173 CSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~~  192 (193)
                      |||++|.||+++|++|.+++
T Consensus       145 ~Sak~~~~v~e~F~~l~~~i  164 (167)
T d1z08a1         145 TSAKQNKGIEELFLDLCKRM  164 (167)
T ss_dssp             EBTTTTBSHHHHHHHHHHHH
T ss_pred             EecCCCcCHHHHHHHHHHHH
Confidence            99999999999999998764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.6e-31  Score=181.87  Aligned_cols=154  Identities=18%  Similarity=0.295  Sum_probs=122.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEE--EeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEEL--SIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL   94 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~--~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v   94 (193)
                      .+||+++|++|||||||++++.+.++.. ..||.+......  ...  ...+.+||++|+..+..+...+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            3799999999999999999999888765 456766544333  333  37889999999999998888899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      +|++++++++++..|+..+...  .+++|+++|+||+|+..  ....++...... .                ..+++++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~--~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~-~----------------~~~~~~e  142 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAE--VGDIPTALVQNKIDLLDDSCIKNEEAEGLAK-R----------------LKLRFYR  142 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH--HCSCCEEEEEECGGGGGGCSSCHHHHHHHHH-H----------------HTCEEEE
T ss_pred             Eeccchhhhhhccccccccccc--CCCceEEEeeccCCcccceeeeehhhHHHHH-H----------------cCCEEEE
Confidence            9999999999999888887542  35899999999999863  334444322111 1                1247899


Q ss_pred             eeeecCCChhhHHHhhhhhc
Q 029437          173 CSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~~  192 (193)
                      |||++|.||+++|++|.+.+
T Consensus       143 ~Sak~g~~v~e~f~~l~~~~  162 (164)
T d1z2aa1         143 TSVKEDLNVSEVFKYLAEKH  162 (164)
T ss_dssp             CBTTTTBSSHHHHHHHHHHH
T ss_pred             eccCCCcCHHHHHHHHHHHH
Confidence            99999999999999997653

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=9e-30  Score=173.54  Aligned_cols=165  Identities=62%  Similarity=1.015  Sum_probs=143.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChh
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKE  101 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~  101 (193)
                      ||+++|++|||||||++++.+.++....||.+.......+.+....+||++|...+..........++++++++|.++..
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~   81 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE   81 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchh
Confidence            79999999999999999999999988889999999999999999999999999999888889999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCCh
Q 029437          102 RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGY  181 (193)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv  181 (193)
                      ++.....++..........+.|+++++||.|+.......++.+.+...........     .....+.+++|||++|+|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~SA~tg~Gv  156 (166)
T d2qtvb1          82 RFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRI-----EGQRPVEVFMCSVVMRNGY  156 (166)
T ss_dssp             GHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---C-----CSSCCEEEEEEBTTTTBSH
T ss_pred             hhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhh-----cccCCCEEEEeeCCCCCCH
Confidence            98888888888887777789999999999999988888899888876664321111     1124578999999999999


Q ss_pred             hhHHHhhhhh
Q 029437          182 GDGFKWLSQY  191 (193)
Q Consensus       182 ~el~~~i~~~  191 (193)
                      +|+|+||.++
T Consensus       157 ~e~~~~l~~~  166 (166)
T d2qtvb1         157 LEAFQWLSQY  166 (166)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHhCC
Confidence            9999999864

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.9e-31  Score=182.64  Aligned_cols=158  Identities=19%  Similarity=0.251  Sum_probs=122.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCCcc--eeEEEe------------CCEEEEEEEcCChhhhHhhHH
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQYPT--SEELSI------------GKIKFKAFDLGGHQIARRVWK   82 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~t~~~~--~~~~~~------------~~~~~~~~D~~G~~~~~~~~~   82 (193)
                      +..+||+++|++|||||||++++.+.++.... ++....  ...+..            ....+.+|||+|++.++.++.
T Consensus         3 d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~   82 (186)
T d2f7sa1           3 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT   82 (186)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHH
Confidence            44689999999999999999999988876532 232221  112211            236799999999999999999


Q ss_pred             hhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCcccc
Q 029437           83 DYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNL  160 (193)
Q Consensus        83 ~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  160 (193)
                      .+++++|++++|+|++++.+++.+..|+..+.........|+++|+||+|+..  ....++.......            
T Consensus        83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~------------  150 (186)
T d2f7sa1          83 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK------------  150 (186)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHH------------
T ss_pred             HHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHH------------
Confidence            99999999999999999999999999888876666667899999999999973  3444433222110            


Q ss_pred             CCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          161 ADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       161 ~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                           ..+++++|||++|.||+++|++|.+.+
T Consensus       151 -----~~~~~~e~Sak~~~~i~e~f~~l~~~i  177 (186)
T d2f7sa1         151 -----YGIPYFETSAATGQNVEKAVETLLDLI  177 (186)
T ss_dssp             -----TTCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             -----cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence                 124579999999999999999998764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.9e-30  Score=179.12  Aligned_cols=158  Identities=19%  Similarity=0.238  Sum_probs=123.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcceeEEE--e--CCEEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTSEELS--I--GKIKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~~~~~--~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      ++..+||+++|++|||||||++++...++... .++.........  .  ....+.+||+||++.+..++..+++.+|++
T Consensus         2 ~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (174)
T d2bmea1           2 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   81 (174)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEE
Confidence            45568999999999999999999998887653 445544433322  2  346899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++|+|.++++++..+..++..+... ...++|+++++||+|+..  .....+.. .+...                ..++
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~~~~~~~~-~~~~~----------------~~~~  143 (174)
T d2bmea1          82 LLVYDITSRETYNALTNWLTDARML-ASQNIVIILCGNKKDLDADREVTFLEAS-RFAQE----------------NELM  143 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHH-HHHHH----------------TTCE
T ss_pred             EEEEecccchhHHHHhhhhcccccc-cCCceEEEEEEecccccchhchhhhHHH-HHHHh----------------CCCE
Confidence            9999999999999999999987653 336899999999999863  22222221 11111                2257


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++|||++|.|++++|++|.+.+
T Consensus       144 ~~e~Sak~~~gi~e~f~~l~~~i  166 (174)
T d2bmea1         144 FLETSALTGENVEEAFVQCARKI  166 (174)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEeeCCCCcCHHHHHHHHHHHH
Confidence            89999999999999999998764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-30  Score=179.51  Aligned_cols=155  Identities=21%  Similarity=0.247  Sum_probs=119.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee-EEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE-ELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      ++||+++|++|||||||++++.++.|.. +.||.+.... .....  .+.+.+||++|+..+. ....++..+|++++|+
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~   80 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY   80 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence            6899999999999999999999998765 4567665432 22233  3789999999998764 4456778999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      |+++++++..+..++..........+.|+++|+||+|+..  ..+.++..+....                 ..+.+++|
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~-----------------~~~~~~e~  143 (168)
T d2atva1          81 DITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATE-----------------LACAFYEC  143 (168)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTSEEEEC
T ss_pred             ccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHH-----------------hCCeEEEE
Confidence            9999999999988776554444456899999999999963  3444443222110                 12468999


Q ss_pred             eeecCCC-hhhHHHhhhhhc
Q 029437          174 SIVRKMG-YGDGFKWLSQYI  192 (193)
Q Consensus       174 Sa~~g~g-v~el~~~i~~~~  192 (193)
                      ||++|.| |+++|+.|.+.+
T Consensus       144 Saktg~gnV~e~F~~l~~~i  163 (168)
T d2atva1         144 SACTGEGNITEIFYELCREV  163 (168)
T ss_dssp             CTTTCTTCHHHHHHHHHHHH
T ss_pred             ccccCCcCHHHHHHHHHHHH
Confidence            9999985 999999998765

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.2e-30  Score=178.99  Aligned_cols=157  Identities=19%  Similarity=0.278  Sum_probs=122.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      +.-+||+++|++|||||||++++.++.+... .++...  ....+..++  ..+.+||++|++.+...+...++.+|+++
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i   81 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   81 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence            3458999999999999999999999887653 333333  233344443  68899999999999998889999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      +|+|.++++++....+++..+.... .+++|+++|+||+|+...  ...+........                 ...++
T Consensus        82 ~v~d~~~~~S~~~~~~~~~~i~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~  143 (175)
T d2f9la1          82 LVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK-----------------NNLSF  143 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCEE
T ss_pred             EEEECCCcccchhHHHHHHHHHHhc-CCCCcEEEEEeeecccccccchHHHHHHhhcc-----------------cCceE
Confidence            9999999999999999998886543 368999999999999732  332222222111                 23578


Q ss_pred             EEeeeecCCChhhHHHhhhhhc
Q 029437          171 FMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       171 ~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++|||++|.|++++|++|.+.+
T Consensus       144 ~e~Sa~~g~~i~e~f~~l~~~i  165 (175)
T d2f9la1         144 IETSALDSTNVEEAFKNILTEI  165 (175)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEecCCCcCHHHHHHHHHHHH
Confidence            9999999999999999988764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.8e-30  Score=178.41  Aligned_cols=156  Identities=22%  Similarity=0.347  Sum_probs=109.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcceeEEEe-----CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYPTSEELSI-----GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL   94 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~~~~~~-----~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v   94 (193)
                      +||+++|++|||||||++++.+.++... .++.+........     ....+.+||++|++.+...+..+++.++++++|
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLV   82 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEEE
Confidence            6899999999999999999999887753 3454443333222     236789999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHc---CCCCCCCcEEEEEeCCCCCCC---CCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437           95 VDAYDKERFAESKKELDALLS---DEALANVPFLVLGNKIDIPYA---ASEEELRYHLGLSNFTTGKGKVNLADSNVRPL  168 (193)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~---~~~~~~~pviiv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (193)
                      +|++++.++..+..|+..+..   .....++|+++++||+|+...   .+.++.. .+....               ...
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~-~~~~~~---------------~~~  146 (175)
T d1ky3a_          83 YDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQ-ELAKSL---------------GDI  146 (175)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHH-HHHHHT---------------TSC
T ss_pred             eecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHH-HHHHHc---------------CCC
Confidence            999999999999888877643   334468999999999998732   2333222 221111               234


Q ss_pred             EEEEeeeecCCChhhHHHhhhhhc
Q 029437          169 EVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       169 ~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .+++|||++|.||+++|++|.+.+
T Consensus       147 ~~~e~SA~~g~gv~e~f~~l~~~~  170 (175)
T d1ky3a_         147 PLFLTSAKNAINVDTAFEEIARSA  170 (175)
T ss_dssp             CEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCcCHHHHHHHHHHHH
Confidence            679999999999999999998753

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-30  Score=181.51  Aligned_cols=173  Identities=16%  Similarity=0.236  Sum_probs=124.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      ..+.+||+|+|++|||||||++++..++|.. ..+|.+... ..+..  ....+.+||++|++.+..++..+++.+|+++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            4567999999999999999999999998776 456665433 22333  3467899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      +|+|++++++++++..+|...+.. ...++|+++|+||+|+.......+-........... .....+++ ..+.+.+++
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~a~-~~~~~~~~E  158 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY-PQGLAMAK-EIGAVKYLE  158 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHH-HSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCH-HHHHHHHH-HTTCSEEEE
T ss_pred             eeeccchHHHHHHHHHHHHHHHHH-hCCCCcEEEEeecccchhhhhhhhhhhhccccchhh-HHHHHHHH-HcCCceEEE
Confidence            999999999999998877777654 345899999999999864321111111111111000 00000000 013368999


Q ss_pred             eeeecCCChhhHHHhhhhhc
Q 029437          173 CSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~~  192 (193)
                      |||++|.||+++|+.|.+.+
T Consensus       159 ~SAk~~~~V~e~F~~l~~~i  178 (183)
T d1mh1a_         159 CSALTQRGLKTVFDEAIRAV  178 (183)
T ss_dssp             CCTTTCTTHHHHHHHHHHHH
T ss_pred             cCCCCCcCHHHHHHHHHHHH
Confidence            99999999999999998753

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.7e-30  Score=176.83  Aligned_cols=157  Identities=22%  Similarity=0.270  Sum_probs=125.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccCC-CCCc--ceeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQP-TQYP--TSEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-t~~~--~~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      ..+||+++|++|||||||++++.+.++....+ +...  ....+..+  ...+.+|||||++.+..++..++..+|++++
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~   85 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   85 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            45899999999999999999999988765433 3333  22334443  4679999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC-CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEE
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY-AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFM  172 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (193)
                      |+|++++.++..+..++..+.........|+++++||.|... ....++..+....                 ..+.+++
T Consensus        86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~-----------------~~~~~~e  148 (177)
T d1x3sa1          86 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARK-----------------HSMLFIE  148 (177)
T ss_dssp             EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHH-----------------TTCEEEE
T ss_pred             EEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHHH-----------------CCCEEEE
Confidence            999999999999999999987666667899999999999873 3344443322211                 1257899


Q ss_pred             eeeecCCChhhHHHhhhhhc
Q 029437          173 CSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       173 ~Sa~~g~gv~el~~~i~~~~  192 (193)
                      |||++|.|++++|++|.+.+
T Consensus       149 ~Sa~tg~gv~e~f~~l~~~l  168 (177)
T d1x3sa1         149 ASAKTCDGVQCAFEELVEKI  168 (177)
T ss_dssp             CCTTTCTTHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHH
Confidence            99999999999999998754

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.3e-30  Score=177.27  Aligned_cols=159  Identities=22%  Similarity=0.303  Sum_probs=117.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc--CCCCCcceeE--EEeCC--EEEEEEEcCChhhhHhhHHhhcccCCE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH--QPTQYPTSEE--LSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDA   90 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~t~~~~~~~--~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~   90 (193)
                      +...+||+++|++|||||||++++.+.++...  .++.+.....  +...+  +.+++|||+|++.+..++..+++++|+
T Consensus         3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~   82 (170)
T d2g6ba1           3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   82 (170)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCce
Confidence            45678999999999999999999999887543  3344444333  44444  688999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437           91 VVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPL  168 (193)
Q Consensus        91 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (193)
                      +++|+|.++++++..+..++....... ....|+++++||.|+..  ....++...... .                ..+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~-~----------------~~~  144 (170)
T d2g6ba1          83 LLLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAK-E----------------YGL  144 (170)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHH-H----------------HTC
T ss_pred             eEEEecCCcccchhhhhhhhhhhhhcc-CCCceEEEEEeeechhhcccccHHHHHHHHH-H----------------cCC
Confidence            999999999999999999988876543 35789999999999884  333333222211 0                124


Q ss_pred             EEEEeeeecCCChhhHHHhhhhhcC
Q 029437          169 EVFMCSIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       169 ~~~~~Sa~~g~gv~el~~~i~~~~~  193 (193)
                      ++++|||++|.|++++|++|.+.++
T Consensus       145 ~~~e~Sak~g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         145 PFMETSAKTGLNVDLAFTAIAKELK  169 (170)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcCHHHHHHHHHHHcC
Confidence            6899999999999999999998763

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.3e-30  Score=179.82  Aligned_cols=157  Identities=20%  Similarity=0.277  Sum_probs=124.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee--EEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE--ELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      ..-+||+|+|++|||||||++++....+.. ..+|.+....  .+..  ..+.+.+|||||++.+..++..+++.+|+++
T Consensus         4 ~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i   83 (194)
T d2bcgy1           4 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   83 (194)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            445899999999999999999999888765 4466665443  3333  3578999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      +|+|+++++++.....++..+... ...+.|+++++||+|+..  ....++.......                 ....+
T Consensus        84 ~v~d~t~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~  145 (194)
T d2bcgy1          84 IVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADA-----------------NKMPF  145 (194)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------TTCCE
T ss_pred             EEEeCcchhhhhhHhhhhhhhhhc-ccCCceEEEEEeccccccccchhHHHHhhhhhc-----------------cCcce
Confidence            999999999999999888877543 447899999999999984  2333332222211                 22467


Q ss_pred             EEeeeecCCChhhHHHhhhhhc
Q 029437          171 FMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       171 ~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++|||++|.|++++|++|.+.+
T Consensus       146 ~e~SAk~g~gi~e~f~~l~~~i  167 (194)
T d2bcgy1         146 LETSALDSTNVEDAFLTMARQI  167 (194)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEecCcCccHHHHHHHHHHHH
Confidence            9999999999999999998764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=9.8e-30  Score=174.86  Aligned_cols=156  Identities=21%  Similarity=0.304  Sum_probs=124.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYL   94 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v   94 (193)
                      .+||+++|++|||||||++++..++|.. ..||.+...  ..+...  .+.+.+||++|++.+..++..++..+|++++|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            4799999999999999999999998776 445666433  344444  37899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC-----CCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           95 VDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY-----AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      +|.+++.++.++..++...... .....|+++++||+|+..     ....++..+....                 ..++
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~-----------------~~~~  144 (170)
T d1ek0a_          83 YDVTKPQSFIKARHWVKELHEQ-ASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEE-----------------KGLL  144 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHH-----------------HTCE
T ss_pred             EeCCcccchhhhhhhhhhhccc-cccccceeeeecccccccccchhhhhHHHHHHHHHH-----------------cCCE
Confidence            9999999999999998876543 346889999999999862     2333332221110                 2257


Q ss_pred             EEEeeeecCCChhhHHHhhhhhcC
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~~  193 (193)
                      +++|||++|.||+++|+.|.++|+
T Consensus       145 ~~e~Sak~g~gV~e~F~~i~~~i~  168 (170)
T d1ek0a_         145 FFETSAKTGENVNDVFLGIGEKIP  168 (170)
T ss_dssp             EEECCTTTCTTHHHHHHHHHTTSC
T ss_pred             EEEecCCCCcCHHHHHHHHHHHhc
Confidence            899999999999999999998764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.8e-30  Score=179.06  Aligned_cols=154  Identities=21%  Similarity=0.274  Sum_probs=119.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCCcc--eeEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQYPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      +||+|+|++|||||||++++.+.++.... ++....  .......  ...+.+||++|+..+..++...+..+|++++|+
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~   83 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   83 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEEE
Confidence            79999999999999999999998876533 333332  2222333  468899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      |+++++++..+..++..+... ...++|+++++||+|+..  ....++.......                 ..+++++|
T Consensus        84 d~~~~~sf~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~-----------------~~~~~~e~  145 (173)
T d2a5ja1          84 DITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFARE-----------------HGLIFMET  145 (173)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCEEEEE
T ss_pred             eecChHHHHhHHHHHHHHHHh-CCCCCeEEEEecCCchhhhhhhHHHHHHHHHHH-----------------cCCEEEEe
Confidence            999999999999999888653 346899999999999862  3333332222111                 12578999


Q ss_pred             eeecCCChhhHHHhhhhhc
Q 029437          174 SIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~~  192 (193)
                      ||++|.||+++|++|.+.+
T Consensus       146 Sa~tg~~V~e~f~~i~~~i  164 (173)
T d2a5ja1         146 SAKTACNVEEAFINTAKEI  164 (173)
T ss_dssp             CTTTCTTHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHH
Confidence            9999999999999998764

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.97  E-value=4.6e-29  Score=170.72  Aligned_cols=164  Identities=36%  Similarity=0.602  Sum_probs=143.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD   96 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d   96 (193)
                      +.+++||+++|++|||||||++++.+.++....++.+........++..+.+||.+|...............+++++++|
T Consensus         2 m~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (169)
T d1upta_           2 MTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVD   81 (169)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhhh
Confidence            44679999999999999999999999999988889888888888999999999999999998888888899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeee
Q 029437           97 AYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIV  176 (193)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  176 (193)
                      +.+..++.....++............|+++++||.|+.......++........            .....+++++|||+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~SA~  149 (169)
T d1upta_          82 SCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPA------------LKDRKWQIFKTSAT  149 (169)
T ss_dssp             TTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGG------------CTTSCEEEEECCTT
T ss_pred             hhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHH------------HhcCCCEEEEEeCC
Confidence            999888888888888777777778899999999999998777777777665444            11245789999999


Q ss_pred             cCCChhhHHHhhhhhc
Q 029437          177 RKMGYGDGFKWLSQYI  192 (193)
Q Consensus       177 ~g~gv~el~~~i~~~~  192 (193)
                      +|.|++++|++|.+.+
T Consensus       150 ~g~gv~e~~~~l~~~l  165 (169)
T d1upta_         150 KGTGLDEAMEWLVETL  165 (169)
T ss_dssp             TCTTHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999998875

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.4e-30  Score=181.21  Aligned_cols=171  Identities=19%  Similarity=0.257  Sum_probs=122.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeE-EEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEE-LSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      |+.+||+++|++|+|||||++++..+.|.. ..||.+..... ...  ....+.+||++|++++..++..+++.+|++++
T Consensus         1 m~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   80 (191)
T d2ngra_           1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   80 (191)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence            457899999999999999999999998765 44666543322 222  34689999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEe
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMC  173 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (193)
                      |+|+++++||+++..++...... ...+.|+++++||+|+.......+.............. ...+++ ......+++|
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~-~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~-~~~~~~-~~~~~~~~e~  157 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPET-AEKLAR-DLKAVKYVEC  157 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHH-HCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH-HHHHHH-HTTCSCEEEC
T ss_pred             ccccchHHHHHHHHHHHHHHHhh-cCCCCceEEEeccccccccchhhhhhhhcccccccHHH-HHHHHH-HcCCCeEEEE
Confidence            99999999999999888877654 34689999999999986331111110000000000000 000000 0023568999


Q ss_pred             eeecCCChhhHHHhhhhh
Q 029437          174 SIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       174 Sa~~g~gv~el~~~i~~~  191 (193)
                      ||++|.||+++|+.+.+.
T Consensus       158 SAk~~~~V~e~f~~l~~~  175 (191)
T d2ngra_         158 SALTQKGLKNVFDEAILA  175 (191)
T ss_dssp             CTTTCTTHHHHHHHHHHH
T ss_pred             eCCCCcCHHHHHHHHHHH
Confidence            999999999999988764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.5e-29  Score=173.49  Aligned_cols=159  Identities=19%  Similarity=0.262  Sum_probs=121.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee--EEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEE
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE--ELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVV   92 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl   92 (193)
                      +.-+||+|+|++|||||||++++.+..+.. ..+|.+....  .....  ...+.+||++|...........+..+|+++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   83 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   83 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence            345799999999999999999999988775 3344444322  22333  367899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHH---cCCCCCCCcEEEEEeCCCCCC-CCCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437           93 YLVDAYDKERFAESKKELDALL---SDEALANVPFLVLGNKIDIPY-AASEEELRYHLGLSNFTTGKGKVNLADSNVRPL  168 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~~pviiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (193)
                      +++|.+++.+++.+..|+..+.   ......+.|+++|+||+|+.. ....++..+.... .               ...
T Consensus        84 ~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~-~---------------~~~  147 (174)
T d1wmsa_          84 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD-N---------------GDY  147 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH-T---------------TCC
T ss_pred             EEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHH-c---------------CCC
Confidence            9999999999999888876664   334446799999999999974 4445544332221 1               224


Q ss_pred             EEEEeeeecCCChhhHHHhhhhhc
Q 029437          169 EVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       169 ~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++++|||++|.||+++|++|.+.+
T Consensus       148 ~~~e~Sak~~~gI~e~f~~l~~~i  171 (174)
T d1wmsa_         148 PYFETSAKDATNVAAAFEEAVRRV  171 (174)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             eEEEEcCCCCcCHHHHHHHHHHHH
Confidence            689999999999999999998764

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.4e-30  Score=178.50  Aligned_cols=158  Identities=20%  Similarity=0.275  Sum_probs=96.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCc--ceeEEEeCC--EEEEEEEcCChhhhHhhHHhhcccCCEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQYP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVDAV   91 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~d~v   91 (193)
                      .+.-+||+++|.+|||||||++++.+..+... .+|.+.  ....+..++  ..+.+||+||++.+..++..+++.+|++
T Consensus         3 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~   82 (173)
T d2fu5c1           3 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   82 (173)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEE
Confidence            44568999999999999999999998886542 344433  334445444  6788899999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC--CCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA--ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++|+|++++.++..+..++..+.. ....+.|+++++||.|+...  ...++......  .               ..++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~--~---------------~~~~  144 (173)
T d2fu5c1          83 MLVYDITNEKSFDNIRNWIRNIEE-HASADVEKMILGNKCDVNDKRQVSKERGEKLAL--D---------------YGIK  144 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHH-HSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHH--H---------------HTCE
T ss_pred             EEEEECCChhhHHHHHHHHHHhhh-hccCCceEEEEEecccchhhcccHHHHHHHHHH--h---------------cCCE
Confidence            999999999999999988888754 34468999999999999843  22333222111  1               2357


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++|||++|.||+++|++|.+.+
T Consensus       145 ~~e~Sa~~g~gv~e~f~~l~~~i  167 (173)
T d2fu5c1         145 FMETSAKANINVENAFFTLARDI  167 (173)
T ss_dssp             EEECCC---CCHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999999999998865

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=1e-29  Score=176.99  Aligned_cols=156  Identities=20%  Similarity=0.299  Sum_probs=121.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEe----CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSEELSI----GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      +||+|+|.+|||||||++++.+.++.. ..||.+.......+    ....+.+||++|.......+...+..+|++++|+
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   82 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF   82 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence            689999999999999999999988765 44666655433332    3478999999999998888888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHc---CCCCCCCcEEEEEeCCCCCCC-CCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437           96 DAYDKERFAESKKELDALLS---DEALANVPFLVLGNKIDIPYA-ASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~---~~~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      |.+++.++..+..|+..+..   .....++|+++|+||+|+... ...++...... ..               ..+.++
T Consensus        83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~-~~---------------~~~~~~  146 (184)
T d1vg8a_          83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY-SK---------------NNIPYF  146 (184)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH-HT---------------TSCCEE
T ss_pred             cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHH-Hh---------------cCCeEE
Confidence            99999999999888876643   233457899999999998743 33333222211 11               235789


Q ss_pred             EeeeecCCChhhHHHhhhhhc
Q 029437          172 MCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       172 ~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +|||++|.||+++|++|.+.+
T Consensus       147 e~Sak~~~gI~e~f~~l~~~i  167 (184)
T d1vg8a_         147 ETSAKEAINVEQAFQTIARNA  167 (184)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEcCCCCcCHHHHHHHHHHHH
Confidence            999999999999999987653

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.3e-29  Score=172.51  Aligned_cols=156  Identities=14%  Similarity=0.156  Sum_probs=115.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc--cCCCCCcc--eeEEEeC--CEEEEEEEcCChhhh-HhhHHhhcccCCEEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQ--HQPTQYPT--SEELSIG--KIKFKAFDLGGHQIA-RRVWKDYYAKVDAVV   92 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~-~~~~~~~~~~~d~vl   92 (193)
                      -+||+++|++|+|||||++++.+..+..  ..++.+..  ...+..+  ...+.+||+++.... +.+...+++.+|+++
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~i   82 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYL   82 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccccccccccccceee
Confidence            4799999999999999999999876543  33444433  2333443  466788997753221 225566789999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEE
Q 029437           93 YLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEV  170 (193)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (193)
                      +|+|+++++++.++..|+..+......+++|+++|+||+|+..  ....++... +...                ..+++
T Consensus        83 lvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~-~a~~----------------~~~~~  145 (172)
T d2g3ya1          83 IVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRA-CAVV----------------FDCKF  145 (172)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHH-HHHH----------------HTCEE
T ss_pred             eeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHH-HHHH----------------cCCeE
Confidence            9999999999999999999887666667999999999999873  344444321 2111                12578


Q ss_pred             EEeeeecCCChhhHHHhhhhhc
Q 029437          171 FMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       171 ~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++|||++|.|++++|++|.+.+
T Consensus       146 ~e~Sak~g~~i~~~f~~l~~~i  167 (172)
T d2g3ya1         146 IETSAAVQHNVKELFEGIVRQV  167 (172)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEeCCCCcCHHHHHHHHHHHH
Confidence            9999999999999999998875

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.2e-28  Score=168.66  Aligned_cols=155  Identities=15%  Similarity=0.183  Sum_probs=116.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce-eEEEeC--CEEEEEEEcCChhhhHhhHHhhcccCCEEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTS-EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVDAVVY   93 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~   93 (193)
                      ..+.+||+++|++|||||||++++.+..+....++..... ..+..+  .+.+.+|||+|+..+.     +++.+|++|+
T Consensus         2 ~~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~il   76 (175)
T d2bmja1           2 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIF   76 (175)
T ss_dssp             CCCEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEE
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceEEEEEEeecccccccc-----cccccceeEE
Confidence            3567999999999999999999999999877666554432 223343  4789999999987654     5678999999


Q ss_pred             EEECCChhhHHHHHHHHHHHH--cCCCCCCCcEEEEEeCCCCCC----CCCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437           94 LVDAYDKERFAESKKELDALL--SDEALANVPFLVLGNKIDIPY----AASEEELRYHLGLSNFTTGKGKVNLADSNVRP  167 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~pviiv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (193)
                      |||++++++|+++..|+..+.  ......+.|+++|+||.|+..    ....++...... ..               ..
T Consensus        77 Vfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~-~~---------------~~  140 (175)
T d2bmja1          77 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCA-DM---------------KR  140 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHH-TS---------------TT
T ss_pred             EeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHH-Hh---------------CC
Confidence            999999999999988877763  233446789999999999852    222333322211 11               34


Q ss_pred             eEEEEeeeecCCChhhHHHhhhhhc
Q 029437          168 LEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       168 ~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +.+++|||++|.|++++|..|.+.+
T Consensus       141 ~~~~e~SAk~~~~v~~~F~~l~~~i  165 (175)
T d2bmja1         141 CSYYETCATYGLNVDRVFQEVAQKV  165 (175)
T ss_dssp             EEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             CeEEEeCCCCCcCHHHHHHHHHHHH
Confidence            6899999999999999999988754

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.2e-29  Score=173.87  Aligned_cols=155  Identities=21%  Similarity=0.281  Sum_probs=118.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee--EEEe--CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTSE--ELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      +||+++|++|||||||+++++..++.. ..||.+....  .+..  ....+.+|||||++.+..++..+++.+|++++|+
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~   82 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVY   82 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEE
Confidence            689999999999999999999988765 3466554433  3333  3467889999999999999899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI  175 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  175 (193)
                      |.++++++..+..++...... .....|++++++|.|+.......+....+...                ..+++++|||
T Consensus        83 d~~~~~s~~~~~~~~~~~~~~-~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~----------------~~~~~~~~Sa  145 (166)
T d1g16a_          83 DITDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRVVTADQGEALAKE----------------LGIPFIESSA  145 (166)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTCCSCHHHHHHHHHH----------------HTCCEEECBT
T ss_pred             ECCCccCHHHHHhhhhhhhcc-ccCcceeeeecchhhhhhhhhhHHHHHHHHHh----------------cCCeEEEECC
Confidence            999999999888887776543 44688999999999998543333322222211                1256899999


Q ss_pred             ecCCChhhHHHhhhhhc
Q 029437          176 VRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       176 ~~g~gv~el~~~i~~~~  192 (193)
                      ++|.|++++|++|.+.+
T Consensus       146 ~~~~~v~e~f~~l~~~i  162 (166)
T d1g16a_         146 KNDDNVNEIFFTLAKLI  162 (166)
T ss_dssp             TTTBSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999999998765

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=3.8e-29  Score=173.25  Aligned_cols=170  Identities=20%  Similarity=0.258  Sum_probs=120.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEE--eCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQYPTS-EELS--IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      ++||+++|++|||||||++++..+.|.. +.||.+... ....  ...+.+.+||++|++.+...+..+++.+|++++|+
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF   81 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence            4789999999999999999999998875 345554322 2222  23478999999999999998888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceEEEEeee
Q 029437           96 DAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSI  175 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  175 (193)
                      |+++++||+.+..+|...+... .++.|+++|+||+|+...................... ...+++ ......+++|||
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~-~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e-~~~~a~-~~~~~~y~E~SA  158 (179)
T d1m7ba_          82 DISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQ-GANMAK-QIGAATYIECSA  158 (179)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHH-CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH-HHHHHH-HHTCSEEEECBT
T ss_pred             ecccCCCHHHHHHHHHHHHhcc-CCcceEEEEEecccccccchhhHHHhhhhcCcchHHH-HHHHHH-HhCCCeEEEEeC
Confidence            9999999999999888876543 3589999999999986321111110000000000000 000000 002357899999


Q ss_pred             ecCC-ChhhHHHhhhhhc
Q 029437          176 VRKM-GYGDGFKWLSQYI  192 (193)
Q Consensus       176 ~~g~-gv~el~~~i~~~~  192 (193)
                      ++|. |++++|+.+.+.+
T Consensus       159 k~~~n~i~~~F~~~~~~~  176 (179)
T d1m7ba_         159 LQSENSVRDIFHVATLAC  176 (179)
T ss_dssp             TTBHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHH
Confidence            9998 5999999887653

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=8.4e-29  Score=169.33  Aligned_cols=152  Identities=21%  Similarity=0.269  Sum_probs=116.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCCccee--EE--EeCCEEEEEEEcCChhhhHh-hHHhhcccCCEEEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQYPTSE--EL--SIGKIKFKAFDLGGHQIARR-VWKDYYAKVDAVVY   93 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~t~~~~~~--~~--~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~d~vl~   93 (193)
                      -+||+++|++|||||||++++..+++.... ++.+....  ..  ......+.+||++|...... .++.++.++|++++
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il   81 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence            479999999999999999999998877543 34443332  22  23357889999999887764 46678899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC--CCCHHHHHHhhCCCccccCCCccccCCCCCcceEEE
Q 029437           94 LVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPY--AASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF  171 (193)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (193)
                      |+|++++++++.+..|+..+.+.....++|+++|+||+|+..  ..+.++..+... .                ..++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~-~----------------~~~~~~  144 (165)
T d1z06a1          82 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD-T----------------HSMPLF  144 (165)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-H----------------TTCCEE
T ss_pred             EEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHH-H----------------CCCEEE
Confidence            999999999999999999887766667899999999999863  345554332211 1                124579


Q ss_pred             Eeeeec---CCChhhHHHhh
Q 029437          172 MCSIVR---KMGYGDGFKWL  188 (193)
Q Consensus       172 ~~Sa~~---g~gv~el~~~i  188 (193)
                      +|||++   +.||+++|++|
T Consensus       145 e~SAkt~~~~~~V~e~F~~l  164 (165)
T d1z06a1         145 ETSAKNPNDNDHVEAIFMTL  164 (165)
T ss_dssp             ECCSSSGGGGSCHHHHHHHH
T ss_pred             EEecccCCcCcCHHHHHHHh
Confidence            999987   45999999987

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=2.7e-26  Score=158.65  Aligned_cols=151  Identities=23%  Similarity=0.195  Sum_probs=108.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccC----CCCCcceeEEEeCCEEEEEEEcCChhh--------hHhhHHhhcccCC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQHQ----PTQYPTSEELSIGKIKFKAFDLGGHQI--------ARRVWKDYYAKVD   89 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~~~d   89 (193)
                      .|+|+|.+|||||||++++++.+.....    .|...........+..+.+|||||...        +.......+..+|
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad   86 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVN   86 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhccccccccccccc
Confidence            6999999999999999999987643321    244445556677889999999999632        2333345578999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcceE
Q 029437           90 AVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLE  169 (193)
Q Consensus        90 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (193)
                      ++++|+|++++..  ....++...+... ..+.|+++|+||+|+...  .++..+.+....               ....
T Consensus        87 ~il~v~D~~~~~~--~~~~~i~~~l~~~-~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~---------------~~~~  146 (178)
T d1wf3a1          87 AVVWVVDLRHPPT--PEDELVARALKPL-VGKVPILLVGNKLDAAKY--PEEAMKAYHELL---------------PEAE  146 (178)
T ss_dssp             EEEEEEETTSCCC--HHHHHHHHHHGGG-TTTSCEEEEEECGGGCSS--HHHHHHHHHHTS---------------TTSE
T ss_pred             ceeeeechhhhhc--ccccchhhheecc-ccchhhhhhhcccccccC--HHHHHHHHHhhc---------------ccCc
Confidence            9999999987643  3335555554432 347899999999999643  333333332222               2346


Q ss_pred             EEEeeeecCCChhhHHHhhhhhc
Q 029437          170 VFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       170 ~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ++++||++|.|+++|+++|.+.+
T Consensus       147 ~~~iSA~~~~gi~~L~~~i~~~l  169 (178)
T d1wf3a1         147 PRMLSALDERQVAELKADLLALM  169 (178)
T ss_dssp             EEECCTTCHHHHHHHHHHHHTTC
T ss_pred             eEEEecCCCCCHHHHHHHHHHhC
Confidence            78999999999999999999876

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=2.7e-26  Score=161.10  Aligned_cols=173  Identities=20%  Similarity=0.260  Sum_probs=128.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAY   98 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~   98 (193)
                      +++||+++|.+|||||||++++....+. +.||.+.....+......+.+||++|++.++..+..++..++++++++|.+
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~-~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~   79 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS-GVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS   79 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS-CCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGG
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC-CCceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeeecc
Confidence            4689999999999999999999888874 679999999999999999999999999999999999999999999999997


Q ss_pred             Chh----------hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCC-CHHHHHHhhCCCccccC----------CCc
Q 029437           99 DKE----------RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAA-SEEELRYHLGLSNFTTG----------KGK  157 (193)
Q Consensus        99 ~~~----------~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~----------~~~  157 (193)
                      +..          .+.+....|..++......+.|+++++||.|+.... .................          ...
T Consensus        80 ~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f  159 (200)
T d2bcjq2          80 EYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMF  159 (200)
T ss_dssp             GGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHH
T ss_pred             chhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHH
Confidence            753          355666777778777777899999999999985110 00001111100000000          000


Q ss_pred             cccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          158 VNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       158 ~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ........+.+.+++|||++|.||+++|+.|.+.|
T Consensus       160 ~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I  194 (200)
T d2bcjq2         160 VDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI  194 (200)
T ss_dssp             HTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             HHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHH
Confidence            00111112457788999999999999999887654

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=3.9e-26  Score=159.62  Aligned_cols=164  Identities=20%  Similarity=0.290  Sum_probs=122.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAY   98 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~   98 (193)
                      +++||+++|..|||||||++++....+    ||.+.....+.+....+.+||++|++.++..+..+++.++++++|+|.+
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~   76 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHE----AGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALS   76 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHS----CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCC----CCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeec
Confidence            468999999999999999999976543    5667778888999999999999999999999999999999999999998


Q ss_pred             ChhhH----------HHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC----C-------------CCHHHHHHhhCCCcc
Q 029437           99 DKERF----------AESKKELDALLSDEALANVPFLVLGNKIDIPY----A-------------ASEEELRYHLGLSNF  151 (193)
Q Consensus        99 ~~~~~----------~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~----~-------------~~~~~~~~~~~~~~~  151 (193)
                      +.+++          .+....+..++......+.|+++++||.|+..    .             ....+........+.
T Consensus        77 ~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  156 (195)
T d1svsa1          77 DYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFE  156 (195)
T ss_dssp             GGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHH
T ss_pred             ccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHH
Confidence            76543          45566777777777778999999999999641    0             011111111111110


Q ss_pred             ccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          152 TTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .      .......+.+.+++|||++|.||+++|+.+.+.|
T Consensus       157 ~------~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~i  191 (195)
T d1svsa1         157 D------LNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI  191 (195)
T ss_dssp             T------TCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             H------HhcccCCCcceeEEEEeECCHhHHHHHHHHHHHH
Confidence            0      0011122456788999999999999999987643

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.93  E-value=2.4e-25  Score=153.91  Aligned_cols=158  Identities=17%  Similarity=0.140  Sum_probs=109.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc----------CCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhccc
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQH----------QPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK   87 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~----------~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~   87 (193)
                      +++++|+++|++|||||||+|+|++......          ..+.......+.+.+..+.++|+||+..+.......+..
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~   82 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI   82 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhh
Confidence            4678999999999999999999986432211          112333455566778999999999999998888888899


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH---HHHhhCCCccccCCCccccCCCC
Q 029437           88 VDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE---LRYHLGLSNFTTGKGKVNLADSN  164 (193)
Q Consensus        88 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  164 (193)
                      +|++++|+|+.+.... +....+.....    .++|+++++||+|+........   ..+.+....            ..
T Consensus        83 ~d~~ilv~d~~~g~~~-~~~~~~~~~~~----~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~------------~~  145 (179)
T d1wb1a4          83 IDLALIVVDAKEGPKT-QTGEHMLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQST------------HN  145 (179)
T ss_dssp             CCEEEEEEETTTCSCH-HHHHHHHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHS------------SS
T ss_pred             ccccccccccccccch-hhhhhhhhhhh----cCCcceeccccccccCHHHHHHHHHHHHHHHHHh------------hc
Confidence            9999999999875432 22233333322    4789999999999975322211   111111000            00


Q ss_pred             CcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          165 VRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      ....+++++||++|.|++++++.|.+.+
T Consensus       146 ~~~~~iv~iSA~~g~gi~eL~~~I~~~l  173 (179)
T d1wb1a4         146 LKNSSIIPISAKTGFGVDELKNLIITTL  173 (179)
T ss_dssp             GGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEEccCCcCHHHHHHHHHhcC
Confidence            1346789999999999999999998765

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=6.2e-25  Score=149.07  Aligned_cols=146  Identities=26%  Similarity=0.317  Sum_probs=109.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcccc----CCCCCcceeEEEeCCEEEEEEEcCChhhh---------HhhHHhhccc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQH----QPTQYPTSEELSIGKIKFKAFDLGGHQIA---------RRVWKDYYAK   87 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~G~~~~---------~~~~~~~~~~   87 (193)
                      +||+++|.+|||||||+|+|++.+....    ..+.......+...+..+.+|||||....         .......+..
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   80 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK   80 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHh
Confidence            5899999999999999999988764332    22444556677788899999999994211         1122334578


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437           88 VDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRP  167 (193)
Q Consensus        88 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (193)
                      +|++++|+|++++..... ...+...      ...|+++++||.|+......+++...+....                 
T Consensus        81 ad~ii~v~d~~~~~~~~~-~~~~~~~------~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~-----------------  136 (160)
T d1xzpa2          81 ADIVLFVLDASSPLDEED-RKILERI------KNKRYLVVINKVDVVEKINEEEIKNKLGTDR-----------------  136 (160)
T ss_dssp             CSEEEEEEETTSCCCHHH-HHHHHHH------TTSSEEEEEEECSSCCCCCHHHHHHHHTCST-----------------
T ss_pred             CCEEEEEEeCCCCcchhh-hhhhhhc------ccccceeeeeeccccchhhhHHHHHHhCCCC-----------------
Confidence            999999999998765332 2222222      4678999999999998888888877776433                 


Q ss_pred             eEEEEeeeecCCChhhHHHhhhhh
Q 029437          168 LEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       168 ~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                       +++++||++|.|+++|+++|.+.
T Consensus       137 -~~~~vSA~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         137 -HMVKISALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             -TEEEEEGGGTCCHHHHHHHHHHH
T ss_pred             -cEEEEECCCCCCHHHHHHHHHhc
Confidence             57899999999999999999764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=3.6e-25  Score=155.39  Aligned_cols=164  Identities=22%  Similarity=0.379  Sum_probs=116.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYD   99 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~   99 (193)
                      .+||+++|++|||||||++++.  -.....||.+.....+.+....+.+||++|++.++..+..+++.+++++++++.++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~--f~~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~   79 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR--IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSE   79 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH--HHHSCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTC
T ss_pred             eEEEEEECCCCCCHHHHHHHHh--cCCCCCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcCC
Confidence            4799999999999999999993  22346789999999999999999999999999999999999999999999999987


Q ss_pred             h----------hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC----CC--------------CHHHHHHhhCCCcc
Q 029437          100 K----------ERFAESKKELDALLSDEALANVPFLVLGNKIDIPY----AA--------------SEEELRYHLGLSNF  151 (193)
Q Consensus       100 ~----------~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~----~~--------------~~~~~~~~~~~~~~  151 (193)
                      .          ..+.....++..+++.....++|+++++||.|+..    ..              ..+...+.+...+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~  159 (200)
T d1zcba2          80 FDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFR  159 (200)
T ss_dssp             TTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHH
T ss_pred             cceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHH
Confidence            4          34567777888888877778999999999999751    00              11111111111110


Q ss_pred             ccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          152 TTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                      ..      ..+.....+-+++|||+++.||+++|+.+.+.
T Consensus       160 ~~------~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~  193 (200)
T d1zcba2         160 GK------RRDQQQRPLYHHFTTAINTENIRLVFRDVKDT  193 (200)
T ss_dssp             TT------CSSCC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             Hh------ccCCCCCceEEEEeeeeCcHHHHHHHHHHHHH
Confidence            00      00111134556789999999999999987654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=9.6e-25  Score=148.27  Aligned_cols=149  Identities=21%  Similarity=0.222  Sum_probs=106.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc--cC--CCCCcceeEEEeCCEEEEEEEcCChhhh--------HhhHHhhccc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQ--HQ--PTQYPTSEELSIGKIKFKAFDLGGHQIA--------RRVWKDYYAK   87 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~--~t~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~~~~~~~   87 (193)
                      .+||+++|++|||||||++++++.+...  ..  .+.......+...+..+.++|+||....        .......+..
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   80 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ   80 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHh
Confidence            3799999999999999999999877542  22  2334445667788899999999994322        1122345678


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437           88 VDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRP  167 (193)
Q Consensus        88 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (193)
                      +|.+++++|..+..++.....+ ..++... ..+.|+++|+||+|+......        +.              ....
T Consensus        81 ~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~-~~~~~iilv~NK~Dl~~~~~~--------~~--------------~~~~  136 (161)
T d2gj8a1          81 ADRVLFMVDGTTTDAVDPAEIW-PEFIARL-PAKLPITVVRNKADITGETLG--------MS--------------EVNG  136 (161)
T ss_dssp             CSEEEEEEETTTCCCCSHHHHC-HHHHHHS-CTTCCEEEEEECHHHHCCCCE--------EE--------------EETT
T ss_pred             ccccceeeccccccchhhhhhh-hhhhhhc-ccccceeeccchhhhhhhHHH--------HH--------------HhCC
Confidence            9999999999887655444433 3333222 247999999999998642110        00              0134


Q ss_pred             eEEEEeeeecCCChhhHHHhhhhhc
Q 029437          168 LEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       168 ~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .+++++||++|.|+++++++|.+.+
T Consensus       137 ~~~~~iSAk~~~gi~~L~~~l~~~l  161 (161)
T d2gj8a1         137 HALIRLSARTGEGVDVLRNHLKQSM  161 (161)
T ss_dssp             EEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhhC
Confidence            6899999999999999999998764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=8e-25  Score=150.18  Aligned_cols=149  Identities=19%  Similarity=0.182  Sum_probs=98.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccc----cCCCCCcceeEEEeCCEEEEEEEcCChhh---------hHhhHHhhcccC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQ----HQPTQYPTSEELSIGKIKFKAFDLGGHQI---------ARRVWKDYYAKV   88 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~G~~~---------~~~~~~~~~~~~   88 (193)
                      +|+++|++|||||||+++|++.....    ...|.......+......+..+|++|...         ........+..+
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a   81 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA   81 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence            69999999999999999999876542    22355666777888889999999999321         223334456789


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437           89 DAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPL  168 (193)
Q Consensus        89 d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (193)
                      |+++++.+.++.... ....+ ...+..   .++|+++++||+|+......+...+......                 .
T Consensus        82 d~i~~~~~~~~~~~~-~~~~~-~~~l~~---~~~pviiv~NK~Dl~~~~~~~~~~~~~~~~~-----------------~  139 (171)
T d1mkya1          82 DLVLFVVDGKRGITK-EDESL-ADFLRK---STVDTILVANKAENLREFEREVKPELYSLGF-----------------G  139 (171)
T ss_dssp             SEEEEEEETTTCCCH-HHHHH-HHHHHH---HTCCEEEEEESCCSHHHHHHHTHHHHGGGSS-----------------C
T ss_pred             cEEEEeecccccccc-ccccc-cccccc---ccccccccchhhhhhhhhhhHHHHHHHhcCC-----------------C
Confidence            999999999765432 12222 222222   3789999999999863222111222211111                 2


Q ss_pred             EEEEeeeecCCChhhHHHhhhhhc
Q 029437          169 EVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       169 ~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .++++||++|.|+++++++|.+.+
T Consensus       140 ~~i~iSAk~g~gid~L~~~i~~~l  163 (171)
T d1mkya1         140 EPIPVSAEHNINLDTMLETIIKKL  163 (171)
T ss_dssp             SCEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CeEEEecCCCCCHHHHHHHHHHhC
Confidence            358899999999999999998865

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=3.5e-23  Score=146.09  Aligned_cols=169  Identities=25%  Similarity=0.319  Sum_probs=117.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEe---CCEEEEEEEcCChhhhH-hhHHhhcccCCEEEEEEEC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSI---GKIKFKAFDLGGHQIAR-RVWKDYYAKVDAVVYLVDA   97 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~G~~~~~-~~~~~~~~~~d~vl~v~d~   97 (193)
                      +|+++|++|||||||++++.+.++....||...+...+.+   ....+.+||++|++.++ ..+..++..++++++|+|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~   81 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDS   81 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEc
Confidence            6999999999999999999999988877888777766665   35789999999999886 4567778999999999999


Q ss_pred             CChhh-HHHHHHHHHHHHcC--CCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCcc----------cc----CCCcccc
Q 029437           98 YDKER-FAESKKELDALLSD--EALANVPFLVLGNKIDIPYAASEEELRYHLGLSNF----------TT----GKGKVNL  160 (193)
Q Consensus        98 ~~~~~-~~~~~~~~~~~~~~--~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~----------~~----~~~~~~~  160 (193)
                      ++..+ +....+++..++..  ....++|+++++||+|++.+.+.+++.+.+.....          ..    ......+
T Consensus        82 ~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~  161 (207)
T d2fh5b1          82 AAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQL  161 (207)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCS
T ss_pred             ccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccccccceeehhhhhhhhh
Confidence            98765 45555555555422  22346899999999999987777776554421100          00    0000000


Q ss_pred             --------CCCCCcceEEEEeeeecCCC------hhhHHHhhhh
Q 029437          161 --------ADSNVRPLEVFMCSIVRKMG------YGDGFKWLSQ  190 (193)
Q Consensus       161 --------~~~~~~~~~~~~~Sa~~g~g------v~el~~~i~~  190 (193)
                              .+.....+.++++|+++|.|      ++++-+||.+
T Consensus       162 ~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~  205 (207)
T d2fh5b1         162 GKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAK  205 (207)
T ss_dssp             SCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHH
T ss_pred             cccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHH
Confidence                    01112346899999999987      7788888764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.90  E-value=1.3e-24  Score=150.72  Aligned_cols=151  Identities=19%  Similarity=0.141  Sum_probs=94.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcc--eeEEEeCCEEEEEEEcCCh-----------hhh----HhhHHhh
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPT--SEELSIGKIKFKAFDLGGH-----------QIA----RRVWKDY   84 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~D~~G~-----------~~~----~~~~~~~   84 (193)
                      .|+++|.||||||||+|++++.+... ..+.+.+  ...+.+.  .+.++||||.           ...    .......
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~-~~~~g~T~~~~~~~~~--~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRR-GKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN   78 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSS-SSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCEeecccccccc--cceecccCCceeccccccccccccchhhhhhhhhc
Confidence            68999999999999999999876532 1222222  2333444  4578999993           111    1223344


Q ss_pred             cccCCEEEEEEECCChhhHHHH----------HHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC--HHHHHHhhCCCccc
Q 029437           85 YAKVDAVVYLVDAYDKERFAES----------KKELDALLSDEALANVPFLVLGNKIDIPYAAS--EEELRYHLGLSNFT  152 (193)
Q Consensus        85 ~~~~d~vl~v~d~~~~~~~~~~----------~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~--~~~~~~~~~~~~~~  152 (193)
                      .+.+|++++|+|+.++......          ...+..+ .   ..++|+++|+||+|+.....  ...+.+.+....  
T Consensus        79 ~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l-~---~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~--  152 (184)
T d2cxxa1          79 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL-R---ELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPL--  152 (184)
T ss_dssp             GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHH-H---HTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCG--
T ss_pred             ccccchheeeeeccccchhhhhhhhccccHHHHHHHHHH-H---HcCCCEEEEEeeeehhhhHHHHHHHHHHHhcccc--
Confidence            5789999999999764321111          1112222 1   24789999999999874321  111333333222  


Q ss_pred             cCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          153 TGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                                 ......++++||++|.|+++++++|.+.+
T Consensus       153 -----------~~~~~~~~~vSA~~g~gi~~L~~~i~~~l  181 (184)
T d2cxxa1         153 -----------SEIDKVFIPISAKFGDNIERLKNRIFEVI  181 (184)
T ss_dssp             -----------GGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             -----------cccCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence                       00224578999999999999999998865

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=2.6e-24  Score=148.76  Aligned_cols=152  Identities=24%  Similarity=0.265  Sum_probs=101.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcccc---CCCCCcceeEEEe-CCEEEEEEEcCChhhh-------HhhHHhhcccCCE
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQH---QPTQYPTSEELSI-GKIKFKAFDLGGHQIA-------RRVWKDYYAKVDA   90 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~---~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~-------~~~~~~~~~~~d~   90 (193)
                      .|+++|.+|||||||+|+|++......   ..+.......... .+..+.+|||||....       .......+..+++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV   82 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence            589999999999999999987764321   2233344433333 4578999999994321       1223344678899


Q ss_pred             EEEEEECCChh--hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCCCcce
Q 029437           91 VVYLVDAYDKE--RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPL  168 (193)
Q Consensus        91 vl~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (193)
                      +++++|+....  .......++...  .....++|+++|+||+|+.......++.+.+...                 ..
T Consensus        83 ~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~-----------------~~  143 (180)
T d1udxa2          83 LLYVLDAADEPLKTLETLRKEVGAY--DPALLRRPSLVALNKVDLLEEEAVKALADALARE-----------------GL  143 (180)
T ss_dssp             EEEEEETTSCHHHHHHHHHHHHHHH--CHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTT-----------------TS
T ss_pred             hhhhcccccccccchhhhhhhhhcc--ccccchhhhhhhhhhhhhhhHHHHHHHHHHHHhc-----------------CC
Confidence            99999986542  333333333322  1122368999999999997544344444444322                 24


Q ss_pred             EEEEeeeecCCChhhHHHhhhhhc
Q 029437          169 EVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       169 ~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +++++||++|.|++++++.|.+.+
T Consensus       144 ~~~~iSA~tg~gid~L~~~i~~~l  167 (180)
T d1udxa2         144 AVLPVSALTGAGLPALKEALHALV  167 (180)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHH
Confidence            689999999999999999997654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=1.1e-23  Score=146.29  Aligned_cols=160  Identities=17%  Similarity=0.132  Sum_probs=104.6

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCccc--c--CCCCCcceeEEEeCCEEEEEEEcCChhhhH------------h
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ--H--QPTQYPTSEELSIGKIKFKAFDLGGHQIAR------------R   79 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~--~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~------------~   79 (193)
                      .....+||+|+|++|+|||||++++++.....  .  ..+.......+...+..+.++|+||.....            .
T Consensus         4 ~~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   83 (186)
T d1mkya2           4 EITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNY   83 (186)
T ss_dssp             CCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhH
Confidence            34567999999999999999999999876432  1  223444556677888999999999964322            2


Q ss_pred             hHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC--HHHHHHhhCCCccccCCCc
Q 029437           80 VWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS--EEELRYHLGLSNFTTGKGK  157 (193)
Q Consensus        80 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~  157 (193)
                      .....+..+|++++|+|+..+.. .....+...+..    .+.|+|+++||+|+.....  ..++.+.+....       
T Consensus        84 ~~~~~~~~~dvii~v~d~~~~~~-~~~~~~~~~~~~----~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~-------  151 (186)
T d1mkya2          84 RVVDSIEKADVVVIVLDATQGIT-RQDQRMAGLMER----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKL-------  151 (186)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHC-------
T ss_pred             HHHHHHhcCCEEEEeecccccch-hhHHHHHHHHHH----cCCceeeeccchhhhcchhhhhhhHHHHHHHHh-------
Confidence            23334578999999999976533 122222222222    4789999999999874322  233333222111       


Q ss_pred             cccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          158 VNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       158 ~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                           ......+++++||++|.|+++|+++|...+
T Consensus       152 -----~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~  181 (186)
T d1mkya2         152 -----YFIDYSPLIFTSADKGWNIDRMIDAMNLAY  181 (186)
T ss_dssp             -----GGGTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             -----cccCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence                 001235689999999999999999998764

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=6.4e-23  Score=146.10  Aligned_cols=115  Identities=22%  Similarity=0.459  Sum_probs=101.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVD   96 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d   96 (193)
                      +++..||+++|++|||||||++++....   ..||.|.....+.+++..+.+||++|+..++..+..++..++++++|+|
T Consensus         3 ~k~~~KilllG~~~vGKTsll~~~~~~~---~~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d   79 (221)
T d1azta2           3 YRATHRLLLLGAGESGKSTIVKQMRILH---VVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVA   79 (221)
T ss_dssp             HHHSEEEEEECSTTSSHHHHHHHHHHHH---CCCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEE
T ss_pred             chhcCEEEEECCCCCCHHHHHHHHhcCC---cCCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEE
Confidence            3567899999999999999999997554   4589999999999999999999999999999999999999999999999


Q ss_pred             CCCh----------hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437           97 AYDK----------ERFAESKKELDALLSDEALANVPFLVLGNKIDIP  134 (193)
Q Consensus        97 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  134 (193)
                      .++.          .++.+....+..+++.....++|+++++||+|+.
T Consensus        80 ~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~  127 (221)
T d1azta2          80 SSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL  127 (221)
T ss_dssp             TTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHH
T ss_pred             ccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhh
Confidence            9753          4566777888888888777899999999999986

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.88  E-value=6.4e-23  Score=143.46  Aligned_cols=159  Identities=16%  Similarity=0.100  Sum_probs=104.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc------cCCCCCcc-----------------------eeEEEeCCEEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQ------HQPTQYPT-----------------------SEELSIGKIKFK   67 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~------~~~t~~~~-----------------------~~~~~~~~~~~~   67 (193)
                      .+..++|+++|+.++|||||+++|++.....      ...|....                       ..........++
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            4677899999999999999999997632111      11111110                       011122235689


Q ss_pred             EEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH----HH
Q 029437           68 AFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE----LR  143 (193)
Q Consensus        68 ~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~----~~  143 (193)
                      ++|+||+..|.......+..+|++++|+|+.+....+...+.+......   ...++++++||+|+.+.....+    +.
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~~~~~~  158 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIK  158 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh---cCccceeeeecccchhhHHHHHHHHHHH
Confidence            9999999999988888889999999999998753222233332222111   2345888999999974322212    22


Q ss_pred             HhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          144 YHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      +.+....              ...++++++||++|.|+++|++.|.+.+
T Consensus       159 ~~~~~~~--------------~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         159 EFIEGTV--------------AENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHTTST--------------TTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHhcccc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            2222111              1346789999999999999999998875

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.88  E-value=6.5e-23  Score=142.21  Aligned_cols=154  Identities=20%  Similarity=0.254  Sum_probs=100.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeC-CEEEEEEEcCChhhhH-------hhHHhhcccCCE
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIG-KIKFKAFDLGGHQIAR-------RVWKDYYAKVDA   90 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~D~~G~~~~~-------~~~~~~~~~~d~   90 (193)
                      +|+|+|++|||||||+|+|++.....   ...|.........+. +..+.+|||||.....       ......+..++.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV   82 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhh
Confidence            69999999999999999998766432   223556666666654 4679999999963321       112223457889


Q ss_pred             EEEEEECCChhhH---HHH-HHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH-HHHHHhhCCCccccCCCccccCCCCC
Q 029437           91 VVYLVDAYDKERF---AES-KKELDALLSDEALANVPFLVLGNKIDIPYAASE-EELRYHLGLSNFTTGKGKVNLADSNV  165 (193)
Q Consensus        91 vl~v~d~~~~~~~---~~~-~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (193)
                      ++++++.......   ... ..............++|+++++||+|+...... +.+.+.+.                  
T Consensus        83 i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~------------------  144 (185)
T d1lnza2          83 IVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT------------------  144 (185)
T ss_dssp             EEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC------------------
T ss_pred             hhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHhc------------------
Confidence            9888887543221   111 111122223345568999999999999743211 22333222                  


Q ss_pred             cceEEEEeeeecCCChhhHHHhhhhhcC
Q 029437          166 RPLEVFMCSIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       166 ~~~~~~~~Sa~~g~gv~el~~~i~~~~~  193 (193)
                      ...+++.+||++|.|+++|+++|.+.++
T Consensus       145 ~~~~v~~iSA~~g~Gi~~L~~~i~~~L~  172 (185)
T d1lnza2         145 DDYPVFPISAVTREGLRELLFEVANQLE  172 (185)
T ss_dssp             SCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHhhh
Confidence            2246789999999999999999988763

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.88  E-value=3e-22  Score=141.03  Aligned_cols=165  Identities=17%  Similarity=0.140  Sum_probs=104.3

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCccc------cCCCCCc----------------------------ceeEEEe
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQ------HQPTQYP----------------------------TSEELSI   61 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~------~~~t~~~----------------------------~~~~~~~   61 (193)
                      +.+++++|+++|+.++|||||+++|++..-..      ...+...                            .......
T Consensus         4 ~~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (205)
T d2qn6a3           4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPK   83 (205)
T ss_dssp             CCCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCE
T ss_pred             CCCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeecccc
Confidence            35678999999999999999999997532110      0000000                            0000111


Q ss_pred             CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH
Q 029437           62 GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE  141 (193)
Q Consensus        62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~  141 (193)
                      ....+.++|+||+..|...+...+..+|.+|+|+|+.+.-.-....+.+......   ...|+|+++||+|+.......+
T Consensus        84 ~~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~---~i~~iIV~vNK~Dl~~~~~~~~  160 (205)
T d2qn6a3          84 FLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALS  160 (205)
T ss_dssp             EEEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECGGGSCHHHHHH
T ss_pred             ceEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc---CCceeeeccccCCCccchHHHH
Confidence            2247899999999999888888889999999999998752112222333322111   2358899999999974322222


Q ss_pred             HHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhcC
Q 029437          142 LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~~  193 (193)
                      .........          .......++++++||++|.|++++++.|..++.
T Consensus       161 ~~~~~~~~l----------~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         161 QYRQIKQFT----------KGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             HHHHHHHHH----------TTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHh----------ccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence            111111000          001113467999999999999999999988763

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=1.6e-22  Score=141.36  Aligned_cols=155  Identities=16%  Similarity=0.167  Sum_probs=91.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCc--ceeEEEeCCEEEEEEEcCChh----------hh---HhhHHhh
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQYP--TSEELSIGKIKFKAFDLGGHQ----------IA---RRVWKDY   84 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~--~~~~~~~~~~~~~~~D~~G~~----------~~---~~~~~~~   84 (193)
                      .+|+|+|++|||||||+|+|++.+.. ........  ....... ...+.+.|++|..          ..   .......
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITT  102 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccc-cccceEEEEEeeccccccccccchhhhHHhhhhcc
Confidence            48999999999999999999986532 11111111  1111121 2344567777621          11   1122234


Q ss_pred             cccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCCCC
Q 029437           85 YAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSN  164 (193)
Q Consensus        85 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (193)
                      ...+|++++|+|+.++.. ....+++..+ ..   .++|+++|+||+|+......++..+.+....            ..
T Consensus       103 ~~~~~~vi~viD~~~~~~-~~~~~~~~~l-~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~l------------~~  165 (195)
T d1svia_         103 REELKAVVQIVDLRHAPS-NDDVQMYEFL-KY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTL------------NI  165 (195)
T ss_dssp             CTTEEEEEEEEETTSCCC-HHHHHHHHHH-HH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHH------------TC
T ss_pred             ccchhhhhhhhhcccccc-cccccccccc-cc---ccCcceechhhccccCHHHHHHHHHHHHHHh------------cc
Confidence            457799999999976532 1122222222 22   4789999999999975444444322222111            00


Q ss_pred             CcceEEEEeeeecCCChhhHHHhhhhhcC
Q 029437          165 VRPLEVFMCSIVRKMGYGDGFKWLSQYIK  193 (193)
Q Consensus       165 ~~~~~~~~~Sa~~g~gv~el~~~i~~~~~  193 (193)
                      .....++++||++|.|+++++++|.+.++
T Consensus       166 ~~~~~~~~~SA~~~~gi~el~~~i~~~l~  194 (195)
T d1svia_         166 DPEDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             CTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            12357899999999999999999988763

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.87  E-value=1.1e-21  Score=136.70  Aligned_cols=163  Identities=17%  Similarity=0.088  Sum_probs=109.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC-------c------------cccCCCCCcceeEEEeCCEEEEEEEcCChhhhH
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDER-------L------------VQHQPTQYPTSEELSIGKIKFKAFDLGGHQIAR   78 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~-------~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~   78 (193)
                      +++++|+++|+.++|||||+++|....       +            .....|.......+.+.+..++++|+||+..|.
T Consensus         1 kp~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~   80 (196)
T d1d2ea3           1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV   80 (196)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHH
Confidence            357899999999999999999986410       0            011223344455667778899999999999998


Q ss_pred             hhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC-HHHHHHhhCCCccccCCCc
Q 029437           79 RVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGKGK  157 (193)
Q Consensus        79 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~  157 (193)
                      ..+...+..+|++++|+|+.+... .+..+.+......   ...|+|+++||+|+..... .+.+..+..........  
T Consensus        81 ~~~~~~~~~aD~allVVda~~G~~-~QT~~~~~~a~~~---~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~--  154 (196)
T d1d2ea3          81 KNMITGTAPLDGCILVVAANDGPM-PQTREHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGY--  154 (196)
T ss_dssp             HHHHHTSSCCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTS--
T ss_pred             HHHHHHHhhcCeEEEEEEcCCCCc-hhHHHHHHHHHHh---cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCC--
Confidence            888888899999999999987643 2333333333221   3468999999999974321 12222222211100000  


Q ss_pred             cccCCCCCcceEEEEeeeecC----------CChhhHHHhhhhhc
Q 029437          158 VNLADSNVRPLEVFMCSIVRK----------MGYGDGFKWLSQYI  192 (193)
Q Consensus       158 ~~~~~~~~~~~~~~~~Sa~~g----------~gv~el~~~i~~~~  192 (193)
                            .....+++++||++|          +|+.+|++.|.+++
T Consensus       155 ------~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         155 ------KGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             ------CTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             ------CcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence                  002367899999999          58999999998765

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.86  E-value=1.1e-21  Score=140.18  Aligned_cols=166  Identities=19%  Similarity=0.185  Sum_probs=103.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccC---CCCC------------------cceeEEEeCCEEEEEEEcCChhhhHh
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQHQ---PTQY------------------PTSEELSIGKIKFKAFDLGGHQIARR   79 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~---~t~~------------------~~~~~~~~~~~~~~~~D~~G~~~~~~   79 (193)
                      ..|+|+|++++|||||+++|++.......   .+..                  .....+.+.+..+.++||||+..+..
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~   85 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTT   85 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTT
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccc
Confidence            45999999999999999999764322110   0111                  01112345567899999999998877


Q ss_pred             hHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCH---HHHHHhhCCCcc-----
Q 029437           80 VWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASE---EELRYHLGLSNF-----  151 (193)
Q Consensus        80 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~---~~~~~~~~~~~~-----  151 (193)
                      .....+..+|++++|+|+.+.-.. .....+..+..    .++|+|+++||+|+......   .++...+.....     
T Consensus        86 ~~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~----~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~  160 (227)
T d1g7sa4          86 LRKRGGALADLAILIVDINEGFKP-QTQEALNILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQK  160 (227)
T ss_dssp             SBCSSSBSCSEEEEEEETTTCCCH-HHHHHHHHHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHH
T ss_pred             cchhcccccceEEEEEecccCccc-chhHHHHHhhc----CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHH
Confidence            767777899999999999875322 22333333332    48899999999999743321   111111111000     


Q ss_pred             -------------ccC--CCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          152 -------------TTG--KGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       152 -------------~~~--~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                                   ...  ..............+++++||.+|.|+++|++.|...
T Consensus       161 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l  215 (227)
T d1g7sa4         161 LDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGL  215 (227)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence                         000  0000011122345789999999999999999988653

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.83  E-value=1.2e-20  Score=132.31  Aligned_cols=113  Identities=21%  Similarity=0.199  Sum_probs=86.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC-----------c---------cccCCCCCcceeEEEeCCEEEEEEEcCChhhh
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDER-----------L---------VQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA   77 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~-----------~---------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~   77 (193)
                      +++++|+++|++++|||||+++|+...           .         .....|.+.....+.+.+..++++||||+..|
T Consensus         1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df   80 (204)
T d2c78a3           1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   80 (204)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhh
Confidence            457899999999999999999995210           0         01234666777788899999999999999999


Q ss_pred             HhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCC
Q 029437           78 RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIPY  135 (193)
Q Consensus        78 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~  135 (193)
                      ...+...+..+|++|+|+|+.+.-.. +..+.|.....    .++| +++++||+|+.+
T Consensus        81 ~~~~~~~~~~aD~avlVvda~~Gv~~-qt~~~~~~~~~----~gi~~iiv~iNK~D~~~  134 (204)
T d2c78a3          81 IKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFMNKVDMVD  134 (204)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH----TTCCCEEEEEECGGGCC
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCeEEEEEEecccCC
Confidence            88888888999999999999876543 33344444433    3665 677899999974

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=2.2e-19  Score=123.44  Aligned_cols=150  Identities=17%  Similarity=0.156  Sum_probs=96.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcccc--C-CCC-CcceeEEEeCCEEEEEEEcCChhhhHhh--H-------HhhcccC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLVQH--Q-PTQ-YPTSEELSIGKIKFKAFDLGGHQIARRV--W-------KDYYAKV   88 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~~~--~-~t~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~--~-------~~~~~~~   88 (193)
                      .|+++|.+|||||||+|+|++.+....  . .+. .............+..+|++|.......  .       ......+
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDV   86 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchhhc
Confidence            589999999999999999998775422  1 122 2334445566778888999885432211  1       1112467


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC-HHHHHHhhCCCccccCCCccccCCCCCcc
Q 029437           89 DAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS-EEELRYHLGLSNFTTGKGKVNLADSNVRP  167 (193)
Q Consensus        89 d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (193)
                      ++++++.|..+...  ....+...+..    ...|.++++||.|...... .....+.+....               ..
T Consensus        87 ~~~l~~~d~~~~~~--~~~~~~~~l~~----~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~---------------~~  145 (179)
T d1egaa1          87 ELVIFVVEGTRWTP--DDEMVLNKLRE----GKAPVILAVNKVDNVQEKADLLPHLQFLASQM---------------NF  145 (179)
T ss_dssp             EEEEEEEETTCCCH--HHHHHHHHHHS----SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTS---------------CC
T ss_pred             ceeEEEEecCccch--hHHHHHHHhhh----ccCceeeeeeeeeccchhhhhhhHhhhhhhhc---------------CC
Confidence            78888888866432  22333333332    4678999999999874311 111212221112               34


Q ss_pred             eEEEEeeeecCCChhhHHHhhhhhc
Q 029437          168 LEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       168 ~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      .+++++||++|.|+++|+++|.+.+
T Consensus       146 ~~~~~vSA~~g~gi~~L~~~i~~~l  170 (179)
T d1egaa1         146 LDIVPISAETGLNVDTIAAIVRKHL  170 (179)
T ss_dssp             SEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred             CCEEEEeCcCCCCHHHHHHHHHHhC
Confidence            5789999999999999999998876

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=7e-20  Score=128.88  Aligned_cols=122  Identities=19%  Similarity=0.256  Sum_probs=87.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHh----hcccCCEEEEE
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKD----YYAKVDAVVYL   94 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~----~~~~~d~vl~v   94 (193)
                      .+.+|+|+|+||||||||+|+|++.++.+. .|.......+..++..+.+||+||+...+..+..    ....++.++++
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~-tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~   80 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM   80 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCB-CCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCe-EEecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceE
Confidence            356999999999999999999999886543 2334455556677788999999999876544433    34566888999


Q ss_pred             EECCC-hhhHHHHHHHHHHHH---cCCCCCCCcEEEEEeCCCCCCCCCHHH
Q 029437           95 VDAYD-KERFAESKKELDALL---SDEALANVPFLVLGNKIDIPYAASEEE  141 (193)
Q Consensus        95 ~d~~~-~~~~~~~~~~~~~~~---~~~~~~~~pviiv~nK~D~~~~~~~~~  141 (193)
                      +|+.+ ..++.....++..++   ......++|+++++||+|+......+.
T Consensus        81 vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~  131 (209)
T d1nrjb_          81 VDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSK  131 (209)
T ss_dssp             EETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHH
T ss_pred             EEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCcHHH
Confidence            99764 455555555554332   233446899999999999986655443

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.81  E-value=8.1e-19  Score=127.37  Aligned_cols=121  Identities=17%  Similarity=0.075  Sum_probs=92.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc---------------------cccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhh
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERL---------------------VQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRV   80 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~---------------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~   80 (193)
                      +|+++|+.|+|||||+.+++...-                     .....|+......+.+++.+++++||||+..|...
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~e   87 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIE   87 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCSTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHHH
Confidence            699999999999999999852110                     01233666778889999999999999999999888


Q ss_pred             HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCC---HHHHHHhhC
Q 029437           81 WKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAAS---EEELRYHLG  147 (193)
Q Consensus        81 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~~~  147 (193)
                      ....++.+|++|+|+|+.+.-.. +....|+....    .++|.++++||+|...+..   .+++++.++
T Consensus        88 ~~~~l~~~D~avlVvda~~Gv~~-~T~~~w~~a~~----~~lP~i~fINKmDr~~ad~~~~l~ei~~~l~  152 (276)
T d2bv3a2          88 VERSMRVLDGAIVVFDSSQGVEP-QSETVWRQAEK----YKVPRIAFANKMDKTGADLWLVIRTMQERLG  152 (276)
T ss_dssp             HHHHHHHCCEEEEEEETTTSSCH-HHHHHHHHHHT----TTCCEEEEEECTTSTTCCHHHHHHHHHHTTC
T ss_pred             HHHHHHhhhheEEeccccCCcch-hHHHHHHHHHH----cCCCEEEEEecccccccccchhHHHHHHHhC
Confidence            88888999999999999887443 34455555543    4999999999999975432   234555555

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.79  E-value=3.2e-18  Score=121.10  Aligned_cols=153  Identities=18%  Similarity=0.088  Sum_probs=98.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC--c-c---------------------------------ccCCCCCcceeEEE
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDER--L-V---------------------------------QHQPTQYPTSEELS   60 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~--~-~---------------------------------~~~~t~~~~~~~~~   60 (193)
                      .+..+||+++|+.++|||||+.+|+...  . .                                 ....+.......+.
T Consensus         6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~   85 (222)
T d1zunb3           6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS   85 (222)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence            4567899999999999999999995211  0 0                                 01112233344556


Q ss_pred             eCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCCCCC-
Q 029437           61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVP-FLVLGNKIDIPYAAS-  138 (193)
Q Consensus        61 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~-  138 (193)
                      ..+..+.++|+||+..+...+......+|++++|+|+.+...-+ ..+.+.....    .++| +|+++||+|+..... 
T Consensus        86 ~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Q-t~e~~~~~~~----~gv~~iiv~vNK~D~~~~~~~  160 (222)
T d1zunb3          86 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASL----LGIKHIVVAINKMDLNGFDER  160 (222)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEEECTTTTTSCHH
T ss_pred             ccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccc-hHHHHHHHHH----cCCCEEEEEEEccccccccce
Confidence            67789999999999999888888889999999999998764322 2222222221    3544 889999999974322 


Q ss_pred             -HHHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChh
Q 029437          139 -EEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYG  182 (193)
Q Consensus       139 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  182 (193)
                       .++..+++.........        ....++++++||.+|.|+.
T Consensus       161 ~~~~~~~~l~~~~~~~~~--------~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         161 VFESIKADYLKFAEGIAF--------KPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHHHHHHHHHHHHHTTTC--------CCSEEEEEECCTTTCTTTS
T ss_pred             ehhhhHHHHhhhhHhhcc--------CCCceEEEEEEcccCccCC
Confidence             12222222111100000        0134788999999999983

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.77  E-value=4.6e-19  Score=127.41  Aligned_cols=161  Identities=17%  Similarity=0.102  Sum_probs=90.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC--c--------------------------------cccCCCCCcceeEEEeC
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDER--L--------------------------------VQHQPTQYPTSEELSIG   62 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~--~--------------------------------~~~~~t~~~~~~~~~~~   62 (193)
                      .+.+++|+++|+.++|||||+.+|+...  .                                .....+.......+.+.
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~  100 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  100 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccc
Confidence            3567899999999999999999984210  0                                00112333445566777


Q ss_pred             CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhH------HHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCC
Q 029437           63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERF------AESKKELDALLSDEALANVP-FLVLGNKIDIPY  135 (193)
Q Consensus        63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~  135 (193)
                      +..+.++|+||+..|...+......+|++++|+|+.+..--      .+..+.+.-...    .++| +++++||+|+..
T Consensus       101 ~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~----~~i~~iiv~iNKmD~~~  176 (245)
T d1r5ba3         101 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKMDEPS  176 (245)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECTTSTT
T ss_pred             cceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH----cCCCeEEEEEEcCCCCc
Confidence            88999999999999988888888999999999999774210      022222222211    2444 789999999975


Q ss_pred             CCC-H---HHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHh
Q 029437          136 AAS-E---EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKW  187 (193)
Q Consensus       136 ~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~  187 (193)
                      ... .   +++.+++......-...      .....++++++||++|.|+.++++.
T Consensus       177 ~~~~e~~~~ei~~~l~~~l~~i~~~------~~~~~v~~VPiSA~~G~nI~~~~~s  226 (245)
T d1r5ba3         177 VQWSEERYKECVDKLSMFLRRVAGY------NSKTDVKYMPVSAYTGQNVKDRVDS  226 (245)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHCC------CHHHHEEEEECBTTTTBTTSSCCCT
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhCc------CcccCCEEEEeeccCCCCcccchhc
Confidence            432 2   22333332111000000      0013478999999999999886544

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=3e-18  Score=122.59  Aligned_cols=154  Identities=13%  Similarity=0.036  Sum_probs=102.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC----------------------Cc------------cccCCCCCcceeEEEeC
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDE----------------------RL------------VQHQPTQYPTSEELSIG   62 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~----------------------~~------------~~~~~t~~~~~~~~~~~   62 (193)
                      -+.+++|+++|+.++|||||+.+|+..                      .+            .....|+......+.+.
T Consensus         3 ~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~   82 (239)
T d1f60a3           3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   82 (239)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred             CCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccC
Confidence            355789999999999999999998421                      00            12345777788889999


Q ss_pred             CEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhH------HHHHHHHHHHHcCCCCCCCc-EEEEEeCCCCCC
Q 029437           63 KIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERF------AESKKELDALLSDEALANVP-FLVLGNKIDIPY  135 (193)
Q Consensus        63 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~  135 (193)
                      +.+++++|+|||..|...+......+|++|+|+|+.+..--      .+..+.+.....    .++| +|+++||+|+..
T Consensus        83 ~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~----~gv~~iiv~iNKmD~~~  158 (239)
T d1f60a3          83 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVK  158 (239)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGT
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH----cCCCeEEEEEECCCCCC
Confidence            99999999999999998888889999999999999764210      122222222211    2555 788999999975


Q ss_pred             CCCH--HHHHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChh
Q 029437          136 AASE--EELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYG  182 (193)
Q Consensus       136 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  182 (193)
                      ....  +++.+++..........        ...+.++++|+..|.|+-
T Consensus       159 ~d~~~~~~~~~el~~~l~~~~~~--------~~~i~~ipiSa~~G~ni~  199 (239)
T d1f60a3         159 WDESRFQEIVKETSNFIKKVGYN--------PKTVPFVPISGWNGDNMI  199 (239)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCC--------GGGCCEEECCTTTCBTTT
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCC--------CCcEEEEEEEccCCCcce
Confidence            4321  22222222111000110        034667899999998863

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.77  E-value=8.7e-19  Score=124.64  Aligned_cols=155  Identities=17%  Similarity=0.129  Sum_probs=96.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC----------------------------------ccccCCCCCcceeEEEeCC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDER----------------------------------LVQHQPTQYPTSEELSIGK   63 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~----------------------------------~~~~~~t~~~~~~~~~~~~   63 (193)
                      +++++|+++|+.++|||||+.+|+...                                  ......+.......+++++
T Consensus         1 kp~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~   80 (224)
T d1jnya3           1 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   80 (224)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC
Confidence            357899999999999999999884210                                  0011224444556677888


Q ss_pred             EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhH------HHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC-
Q 029437           64 IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERF------AESKKELDALLSDEALANVPFLVLGNKIDIPYA-  136 (193)
Q Consensus        64 ~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-  136 (193)
                      ..++++||||+..|...+...+.-+|++|+|+|+.+...-      .+..+.+.....   ....++|+++||+|+... 
T Consensus        81 ~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~---~~~~~iIv~iNK~D~~~~~  157 (224)
T d1jnya3          81 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT---MGLDQLIVAVNKMDLTEPP  157 (224)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH---TTCTTCEEEEECGGGSSST
T ss_pred             ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH---hCCCceEEEEEcccCCCcc
Confidence            9999999999999999999999999999999999875211      112222111111   124468999999999743 


Q ss_pred             CCHHH---HHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhh
Q 029437          137 ASEEE---LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGD  183 (193)
Q Consensus       137 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  183 (193)
                      .....   +.............        .....+++++||..|.|+-+
T Consensus       158 ~~~~~~~~v~~~i~~~~~~~~~--------~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         158 YDEKRYKEIVDQVSKFMRSYGF--------NTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTC--------CCTTCEEEECBTTTTBTTTB
T ss_pred             ccHHHHHHHHHHHHhHHHhcCC--------CcccCeEEEEEccCCCCccc
Confidence            22221   11111110000000        11347889999999999843

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.76  E-value=1.1e-17  Score=121.01  Aligned_cols=108  Identities=19%  Similarity=0.141  Sum_probs=84.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc---------------------ccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhh
Q 029437           22 KILFLGLDNAGKTTLLHMLKDERLV---------------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRV   80 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~   80 (193)
                      +|+|+|+.++|||||+.++....-.                     ....|.......+.+++.+++++||||+..|...
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e   83 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE   83 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence            6999999999999999998522100                     1223556667788999999999999999999988


Q ss_pred             HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437           81 WKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP  134 (193)
Q Consensus        81 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  134 (193)
                      ....+..+|++++|+|+.+.-.. +....|+....    .++|.++++||+|..
T Consensus        84 ~~~al~~~D~avlvvda~~Gv~~-~t~~~~~~~~~----~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          84 IRGALEAADAALVAVSAEAGVQV-GTERAWTVAER----LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHCSEEEEEEETTTCSCH-HHHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred             hhhhhcccCceEEEeeccCCccc-hhHHHHHhhhh----ccccccccccccccc
Confidence            88889999999999999876443 33344454443    389999999999974

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=4.7e-18  Score=117.18  Aligned_cols=156  Identities=17%  Similarity=0.177  Sum_probs=86.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccC---CCCC-cceeEEEeCCEEEEEEEcCChh--------hhHh---hH
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ---PTQY-PTSEELSIGKIKFKAFDLGGHQ--------IARR---VW   81 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~---~t~~-~~~~~~~~~~~~~~~~D~~G~~--------~~~~---~~   81 (193)
                      ....++|+++|.+|||||||+|++++.+.....   ++.. .........+......+.++..        ....   ..
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEY   92 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhhh
Confidence            346789999999999999999999887644322   1211 2222222333333333333311        1111   11


Q ss_pred             HhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHH----HHHhhCCCccccCCCc
Q 029437           82 KDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEE----LRYHLGLSNFTTGKGK  157 (193)
Q Consensus        82 ~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~  157 (193)
                      .......+.++.+.+...... .....++.....    ...++++++||+|+........    +.+.+....       
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~-------  160 (188)
T d1puia_          93 LEKRQSLQGLVVLMDIRHPLK-DLDQQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFN-------  160 (188)
T ss_dssp             HHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGC-------
T ss_pred             hhhhhheeEEEEeecccccch-hHHHHHHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhC-------
Confidence            122234455666666655432 222333333322    3778999999999974332222    222222111       


Q ss_pred             cccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          158 VNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       158 ~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                              ...+++++||++|.|+++|++.|.+.+
T Consensus       161 --------~~~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         161 --------GDVQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             --------SCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             --------CCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence                    346899999999999999999997653

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=1.3e-15  Score=113.60  Aligned_cols=135  Identities=18%  Similarity=0.179  Sum_probs=92.3

Q ss_pred             HHHHHHHHHhhCCCCCcc-EEEEEcCCCCCHHHHHHHHhcCC--cc-----------------ccCCCCCcceeEEEe--
Q 029437            4 LDWFYGVLASLGLWQKEA-KILFLGLDNAGKTTLLHMLKDER--LV-----------------QHQPTQYPTSEELSI--   61 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~-~i~v~G~~~~GKssl~~~l~~~~--~~-----------------~~~~t~~~~~~~~~~--   61 (193)
                      ++|++.++.    ...++ +|+|+|+.++|||||+.++....  ..                 ....|.......+.+  
T Consensus         4 ~~~~~~lm~----~~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~   79 (341)
T d1n0ua2           4 VDQMRSLMD----KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEM   79 (341)
T ss_dssp             HHHHHHHHH----CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEEC
T ss_pred             HHHHHHHhc----CcccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEecc
Confidence            456666664    33456 49999999999999999985211  00                 011233333333322  


Q ss_pred             --------------CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEE
Q 029437           62 --------------GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVL  127 (193)
Q Consensus        62 --------------~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv  127 (193)
                                    +.+.++++||||+..|.......++-+|++++|+|+.+.-.. +....+.....    .++|++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~-qT~~~~~~a~~----~~~p~i~v  154 (341)
T d1n0ua2          80 SDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCV-QTETVLRQALG----ERIKPVVV  154 (341)
T ss_dssp             CHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCH-HHHHHHHHHHH----TTCEEEEE
T ss_pred             CcccccchhccccccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcch-hHHHHHHHHHH----cCCCeEEE
Confidence                          346799999999999988888888999999999999887543 33344455544    38999999


Q ss_pred             EeCCCCC---CCCCHHHHHHhhC
Q 029437          128 GNKIDIP---YAASEEELRYHLG  147 (193)
Q Consensus       128 ~nK~D~~---~~~~~~~~~~~~~  147 (193)
                      +||+|..   -...++++.+.++
T Consensus       155 iNKiDr~~~el~~~~~~~~~~l~  177 (341)
T d1n0ua2         155 INKVDRALLELQVSKEDLYQTFA  177 (341)
T ss_dssp             EECHHHHHHTSCCCHHHHHHHHH
T ss_pred             EECcccccccHHhhHHHHHHHHc
Confidence            9999986   2345555554443

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=3.2e-16  Score=116.60  Aligned_cols=154  Identities=17%  Similarity=0.147  Sum_probs=86.7

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhc------CCcc--ccCCCCCcceeEEEe--------------------------
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKD------ERLV--QHQPTQYPTSEELSI--------------------------   61 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~------~~~~--~~~~t~~~~~~~~~~--------------------------   61 (193)
                      .....++|+|+|+||||||||++++..      .+..  ...|+...+-..+..                          
T Consensus        50 ~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lg  129 (327)
T d2p67a1          50 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLG  129 (327)
T ss_dssp             GCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----
T ss_pred             ccCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccc
Confidence            345678999999999999999999862      1211  111221111100000                          


Q ss_pred             ---------------CCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEE
Q 029437           62 ---------------GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLV  126 (193)
Q Consensus        62 ---------------~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pvii  126 (193)
                                     .+..+.+++|.|......   .....+|.+++|.+....+..+.....+.++         +-++
T Consensus       130 g~~~~~~~~~~~~~~~g~d~iliEtvG~gq~e~---~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~---------aDi~  197 (327)
T d2p67a1         130 GASQRARELMLLCEAAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKGLMEV---------ADLI  197 (327)
T ss_dssp             CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHHHHHH---------CSEE
T ss_pred             cchhhhhHHHHHHHhcCCCeEEEeeccccccch---hhhhccceEEEEecCCCchhhhhhchhhhcc---------ccEE
Confidence                           023455666665432222   2335689999998876665555555555554         2289


Q ss_pred             EEeCCCCCCCCCHHH----HHHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          127 LGNKIDIPYAASEEE----LRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       127 v~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                      |+||+|+........    +...+....    .      +...+..+++.|||.+|.|++++++.|.+.
T Consensus       198 VvNKaD~~~~~~~~~~~~~~~~al~~~~----~------~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~  256 (327)
T d2p67a1         198 VINKDDGDNHTNVAIARHMYESALHILR----R------KYDEWQPRVLTCSALEKRGIDEIWHAIIDF  256 (327)
T ss_dssp             EECCCCTTCHHHHHHHHHHHHHHHHHSC----C------SBTTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred             EEEeecccchHHHHHHHHHHHHHhhhcc----c------CCCCCcceeEEEEeeCCCCHHHHHHHHHHH
Confidence            999999874332222    222221111    0      111245689999999999999999999865

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=7.5e-16  Score=117.91  Aligned_cols=160  Identities=13%  Similarity=0.114  Sum_probs=90.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-------cC-CCCCcceeEEEeCCEEEEEEEcCChhhhH----h-hHHhhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-------HQ-PTQYPTSEELSIGKIKFKAFDLGGHQIAR----R-VWKDYY   85 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-------~~-~t~~~~~~~~~~~~~~~~~~D~~G~~~~~----~-~~~~~~   85 (193)
                      ..++|+|+|.+|+|||||+|++.+.....       .. .|....... ......+.+|||||.....    . .....+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~-~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeee-ccCCCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            46899999999999999999998754221       11 122222221 1233458899999964322    1 222335


Q ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC---------CCCCHHHHHHhhCCCccccCCC
Q 029437           86 AKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIP---------YAASEEELRYHLGLSNFTTGKG  156 (193)
Q Consensus        86 ~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~---------~~~~~~~~~~~~~~~~~~~~~~  156 (193)
                      ..+|.++++.|..-.+   +....+..+..    .++|+++|.||+|..         .....++..+.+.......   
T Consensus       134 ~~~d~~l~~~~~~~~~---~d~~l~~~l~~----~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~---  203 (400)
T d1tq4a_         134 YEYDFFIIISATRFKK---NDIDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNT---  203 (400)
T ss_dssp             GGCSEEEEEESSCCCH---HHHHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHH---
T ss_pred             hcceEEEEecCCCCCH---HHHHHHHHHHH----cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHH---
Confidence            6789998888764332   22233333332    378999999999964         1112222222221111000   


Q ss_pred             ccccCCCCCcceEEEEeeeec--CCChhhHHHhhhhhc
Q 029437          157 KVNLADSNVRPLEVFMCSIVR--KMGYGDGFKWLSQYI  192 (193)
Q Consensus       157 ~~~~~~~~~~~~~~~~~Sa~~--g~gv~el~~~i~~~~  192 (193)
                         +.+......++|.+|...  ..|+.+|.+++.+.+
T Consensus       204 ---l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L  238 (400)
T d1tq4a_         204 ---FRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL  238 (400)
T ss_dssp             ---HHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred             ---HHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHh
Confidence               000111234577788654  558999999887654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.57  E-value=3.2e-16  Score=112.27  Aligned_cols=125  Identities=14%  Similarity=0.059  Sum_probs=67.7

Q ss_pred             EEEEEEEcCChhhhHhhHHh---h--cccCCEEEEEEECCC---hhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437           64 IKFKAFDLGGHQIARRVWKD---Y--YAKVDAVVYLVDAYD---KERFAESKKELDALLSDEALANVPFLVLGNKIDIPY  135 (193)
Q Consensus        64 ~~~~~~D~~G~~~~~~~~~~---~--~~~~d~vl~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~  135 (193)
                      ..+.++|+||+.........   .  ....+.+++++|+..   +...............   ....|.++++||+|+..
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~---~~~~~~ivvinK~D~~~  171 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDL---RLGATTIPALNKVDLLS  171 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHH---HHTSCEEEEECCGGGCC
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHH---HhCCCceeeeecccccc
Confidence            45899999998765332211   1  124678999999853   3332222111111111   13789999999999985


Q ss_pred             CCCHHHHHHhhCCCcc-c----cC-C-------CccccCCCCCcceEEEEeeeecCCChhhHHHhhhhh
Q 029437          136 AASEEELRYHLGLSNF-T----TG-K-------GKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY  191 (193)
Q Consensus       136 ~~~~~~~~~~~~~~~~-~----~~-~-------~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~  191 (193)
                      ................ .    .. .       ............++++++||++|+|+++++++|.++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         172 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4333222211110000 0    00 0       000000001134678999999999999999999874

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.57  E-value=6e-14  Score=101.25  Aligned_cols=117  Identities=15%  Similarity=0.106  Sum_probs=79.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc----CCCCCcceeEEEeCCEEEEEEEcCChhhh-------HhhHHh--
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQH----QPTQYPTSEELSIGKIKFKAFDLGGHQIA-------RRVWKD--   83 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~--   83 (193)
                      .+..++|+++|.+|+|||||+|++++.+....    ..|...........+..+.++||||....       ......  
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~  108 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  108 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHH
Confidence            35779999999999999999999998774432    23555566677788899999999994321       111111  


Q ss_pred             hcccCCEEEEEEECCCh---hhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCC
Q 029437           84 YYAKVDAVVYLVDAYDK---ERFAESKKELDALLSDEALANVPFLVLGNKIDIPY  135 (193)
Q Consensus        84 ~~~~~d~vl~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~  135 (193)
                      .....|++++|++.++.   ..-......+...+...  --.++++|+||.|...
T Consensus       109 ~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~--~~~~~ivv~t~~D~~~  161 (257)
T d1h65a_         109 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG--IWNKAIVALTHAQFSP  161 (257)
T ss_dssp             TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECCSCCC
T ss_pred             hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchh--hhhCEEEEEECcccCC
Confidence            22467899999998653   22233334444443221  1357899999999874

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.56  E-value=1.4e-14  Score=107.50  Aligned_cols=155  Identities=14%  Similarity=0.060  Sum_probs=91.9

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCC------cc--ccCCCC-------------------CcceeE----------
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDER------LV--QHQPTQ-------------------YPTSEE----------   58 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~------~~--~~~~t~-------------------~~~~~~----------   58 (193)
                      .....++|+|+|+||||||||++++...-      ..  ...|+.                   +.....          
T Consensus        47 ~~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~g  126 (323)
T d2qm8a1          47 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLG  126 (323)
T ss_dssp             GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHH
T ss_pred             ccCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeecccccccccc
Confidence            34567899999999999999999986321      00  000100                   000000          


Q ss_pred             ------------EEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEE
Q 029437           59 ------------LSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLV  126 (193)
Q Consensus        59 ------------~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pvii  126 (193)
                                  ++..+..+.++.|.|.......   ...-+|.+++|......+..+.....+.++         +-++
T Consensus       127 g~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k~gilE~---------aDi~  194 (323)
T d2qm8a1         127 GVAAKTRETMLLCEAAGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIKKGIFEL---------ADMI  194 (323)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CCTTHHHH---------CSEE
T ss_pred             chhHHHHHHHHhhccCCCCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhhhhHhhh---------hhee
Confidence                        0111356788888886543332   224589999999998876665554444444         3399


Q ss_pred             EEeCCCCCCCCCHHH-H----HHhhCCCccccCCCccccCCCCCcceEEEEeeeecCCChhhHHHhhhhhc
Q 029437          127 LGNKIDIPYAASEEE-L----RYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI  192 (193)
Q Consensus       127 v~nK~D~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~~~  192 (193)
                      |+||+|+.+...... .    ...+....          .....+..+++.|||++|.|+++++++|.++.
T Consensus       195 vvNKaD~~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~  255 (323)
T d2qm8a1         195 AVNKADDGDGERRASAAASEYRAALHILT----------PPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  255 (323)
T ss_dssp             EEECCSTTCCHHHHHHHHHHHHHHHTTBC----------CSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             eEeccccccchHHHHHHHHHHHHHhhccc----------ccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence            999999875433222 1    22222111          01112456799999999999999999997653

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.17  E-value=4.7e-10  Score=82.21  Aligned_cols=130  Identities=15%  Similarity=0.169  Sum_probs=78.8

Q ss_pred             hHHHHHHHHHhhCCC--CCccEEEEEcCCCCCHHHHHHHHhcCCcccc--CCCC-CcceeE-------------------
Q 029437            3 LLDWFYGVLASLGLW--QKEAKILFLGLDNAGKTTLLHMLKDERLVQH--QPTQ-YPTSEE-------------------   58 (193)
Q Consensus         3 ~~~~~~~~~~~~~~~--~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~t~-~~~~~~-------------------   58 (193)
                      +++-+.+.+...+..  -...+|+|+|..++|||||+|++++.++.+.  .|+. -+....                   
T Consensus         7 ~~~~l~d~l~~lg~~~~~~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~   86 (299)
T d2akab1           7 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKF   86 (299)
T ss_dssp             HHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCB
T ss_pred             HHHHHHHHHHHcCCCCCCCCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCee
Confidence            345555555555522  3556899999999999999999998886432  2211 110000                   


Q ss_pred             ------------------------------E--EeC-CEEEEEEEcCChhh-------------hHhhHHhhcccCC-EE
Q 029437           59 ------------------------------L--SIG-KIKFKAFDLGGHQI-------------ARRVWKDYYAKVD-AV   91 (193)
Q Consensus        59 ------------------------------~--~~~-~~~~~~~D~~G~~~-------------~~~~~~~~~~~~d-~v   91 (193)
                                                    +  ... -..+.++|+||...             ...+...++...+ ++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~i  166 (299)
T d2akab1          87 TDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLI  166 (299)
T ss_dssp             CCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEE
T ss_pred             CCHHHHHHHHHHHHHHhhCCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCcccee
Confidence                                          0  110 12478999999422             2244455666666 45


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCC
Q 029437           92 VYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYA  136 (193)
Q Consensus        92 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  136 (193)
                      ++|.++...-+-.....+.+.+-    ....++++|+||.|..+.
T Consensus       167 l~v~~a~~~~~~~~~~~~~~~~~----~~~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         167 LAVSPANSDLANSDALKIAKEVD----PQGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             EEEEESSSCGGGCHHHHHHHHHC----TTCSSEEEEEECGGGSCT
T ss_pred             eeecccccchhhhHHHHHHHHhC----cCCCceeeEEeccccccc
Confidence            66776765444344455555542    235689999999999854

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.17  E-value=8e-11  Score=86.32  Aligned_cols=82  Identities=22%  Similarity=0.355  Sum_probs=62.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCc--cccC--CCCCcceeEEEeCC-----------------EEEEEEEcCChhh
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERL--VQHQ--PTQYPTSEELSIGK-----------------IKFKAFDLGGHQI   76 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~--~t~~~~~~~~~~~~-----------------~~~~~~D~~G~~~   76 (193)
                      ...++|+++|.|+||||||++++++...  ....  .|..++.+.+...+                 ..+.+.|+||...
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            4668999999999999999999997653  2333  37788887776553                 5789999998432


Q ss_pred             h-------HhhHHhhcccCCEEEEEEECCC
Q 029437           77 A-------RRVWKDYYAKVDAVVYLVDAYD   99 (193)
Q Consensus        77 ~-------~~~~~~~~~~~d~vl~v~d~~~   99 (193)
                      .       ...+...++.+|++++|+|+.+
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccC
Confidence            1       2344556689999999999854

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.14  E-value=5.1e-11  Score=86.63  Aligned_cols=79  Identities=20%  Similarity=0.259  Sum_probs=57.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCC-----------------EEEEEEEcCChhhh--
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGK-----------------IKFKAFDLGGHQIA--   77 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-----------------~~~~~~D~~G~~~~--   77 (193)
                      .++|+++|.|+||||||+++++......   ...|..++.+.+...+                 ..+.+.|+||....  
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            3699999999999999999999776432   2246677777776543                 35889999995322  


Q ss_pred             -----HhhHHhhcccCCEEEEEEECC
Q 029437           78 -----RRVWKDYYAKVDAVVYLVDAY   98 (193)
Q Consensus        78 -----~~~~~~~~~~~d~vl~v~d~~   98 (193)
                           ...+-..++.+|++++|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence                 123445568999999999874

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.11  E-value=7.5e-11  Score=87.35  Aligned_cols=78  Identities=22%  Similarity=0.187  Sum_probs=45.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEE------------------------eCCEEEEEEEcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQP--TQYPTSEELS------------------------IGKIKFKAFDLGG   73 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~------------------------~~~~~~~~~D~~G   73 (193)
                      ++|+++|.||||||||+|++++.+.. ...|  |..++.+...                        .....+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            47999999999999999999987632 1222  4444443221                        2235799999999


Q ss_pred             hhhhH----hhH---HhhcccCCEEEEEEECC
Q 029437           74 HQIAR----RVW---KDYYAKVDAVVYLVDAY   98 (193)
Q Consensus        74 ~~~~~----~~~---~~~~~~~d~vl~v~d~~   98 (193)
                      .....    .+.   -..++.+|++++|+|+.
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETT
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEeccc
Confidence            54321    111   22346899999999986

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.08  E-value=1.1e-09  Score=80.48  Aligned_cols=68  Identities=18%  Similarity=0.143  Sum_probs=42.1

Q ss_pred             EEEEEEcCChhh-------------hHhhHHhhcccCCEEEEEE-ECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeC
Q 029437           65 KFKAFDLGGHQI-------------ARRVWKDYYAKVDAVVYLV-DAYDKERFAESKKELDALLSDEALANVPFLVLGNK  130 (193)
Q Consensus        65 ~~~~~D~~G~~~-------------~~~~~~~~~~~~d~vl~v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK  130 (193)
                      .+.++|+||...             ...+...++..++.+++++ ++.....-.....+.+.+-    ....++++|+||
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~----~~~~r~i~Vitk  207 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD----PEGKRTIGVITK  207 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC----SSCSSEEEEEEC
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhC----cCCCeEEEEEec
Confidence            578999999432             2345566778888765554 5543322223344444442    235689999999


Q ss_pred             CCCCCC
Q 029437          131 IDIPYA  136 (193)
Q Consensus       131 ~D~~~~  136 (193)
                      +|..+.
T Consensus       208 ~D~~~~  213 (306)
T d1jwyb_         208 LDLMDK  213 (306)
T ss_dssp             TTSSCS
T ss_pred             cccccc
Confidence            999743

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.77  E-value=4.3e-09  Score=76.04  Aligned_cols=58  Identities=19%  Similarity=0.326  Sum_probs=38.0

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccee--EEEeCCEEEEEEEcCCh
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSE--ELSIGKIKFKAFDLGGH   74 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~G~   74 (193)
                      .....++++|+|.||||||||+|++.+.+.....++++.+..  .+.. +..+.++||||.
T Consensus       108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~-~~~~~l~DTPGi  167 (273)
T d1puja_         108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGI  167 (273)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCC
T ss_pred             CCCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEEC-CCCeEEecCCCc
Confidence            345789999999999999999999999886665554444322  1222 235899999994

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.55  E-value=8.7e-08  Score=66.88  Aligned_cols=22  Identities=45%  Similarity=0.582  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      -.+|.|..|||||||++++...
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            4789999999999999999764

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.55  E-value=2.4e-08  Score=69.40  Aligned_cols=88  Identities=18%  Similarity=0.091  Sum_probs=61.4

Q ss_pred             hcccCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCC
Q 029437           84 YYAKVDAVVYLVDAYDKE-RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLAD  162 (193)
Q Consensus        84 ~~~~~d~vl~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (193)
                      .+.+.|.+++|+++.+|+ +...+.+++.....    .++|.++|+||+|+.......++........            
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~------------   70 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYS------------   70 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHT------------
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCHHHHHHHHHhhcccc------------
Confidence            346889999999997763 34556666655543    4899999999999975433333333332211            


Q ss_pred             CCCcceEEEEeeeecCCChhhHHHhhhh
Q 029437          163 SNVRPLEVFMCSIVRKMGYGDGFKWLSQ  190 (193)
Q Consensus       163 ~~~~~~~~~~~Sa~~g~gv~el~~~i~~  190 (193)
                         ...+++.+|++++.|++++.+++..
T Consensus        71 ---~~~~v~~vSa~~~~g~~~L~~~l~~   95 (225)
T d1u0la2          71 ---GLYPIVKTSAKTGMGIEELKEYLKG   95 (225)
T ss_dssp             ---TTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             ---cceeEEEeccccchhHhhHHHHhcC
Confidence               2246789999999999999988754

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.51  E-value=8.8e-08  Score=66.51  Aligned_cols=54  Identities=19%  Similarity=0.196  Sum_probs=34.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccC-----------CCCCcceeEEEeCCEEEEEEEcCChhhh
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDERLVQHQ-----------PTQYPTSEELSIGKIKFKAFDLGGHQIA   77 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~-----------~t~~~~~~~~~~~~~~~~~~D~~G~~~~   77 (193)
                      ...+++|++|+|||||+|+|.......+.           .|.......+..+   --++||||...+
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~  160 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANL  160 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCccccc
Confidence            47899999999999999999876533211           1222222222222   378999997554

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.47  E-value=5.6e-08  Score=70.03  Aligned_cols=88  Identities=22%  Similarity=0.180  Sum_probs=63.3

Q ss_pred             hhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCcc
Q 029437           79 RVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKV  158 (193)
Q Consensus        79 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (193)
                      ......++.+|+||+|+|+.+|.+..+  ..+..++     .++|+|+|+||+|+.+....+++.+.+....        
T Consensus         7 r~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~-----~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~--------   71 (273)
T d1puja_           7 REVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFENQG--------   71 (273)
T ss_dssp             HHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTT--------
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH-----cCCCeEEEEECccCCchHHHHHHHHHHHhcC--------
Confidence            344567899999999999988855322  3344443     2689999999999986544555555554333        


Q ss_pred             ccCCCCCcceEEEEeeeecCCChhhHHHhhhh
Q 029437          159 NLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQ  190 (193)
Q Consensus       159 ~~~~~~~~~~~~~~~Sa~~g~gv~el~~~i~~  190 (193)
                               ...+.+|+.++.|..++.+.+.+
T Consensus        72 ---------~~~i~isa~~~~~~~~~~~~~~~   94 (273)
T d1puja_          72 ---------IRSLSINSVNGQGLNQIVPASKE   94 (273)
T ss_dssp             ---------CCEEECCTTTCTTGGGHHHHHHH
T ss_pred             ---------CccceeecccCCCccccchhhhh
Confidence                     35688999999999888776654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=2.2e-06  Score=58.82  Aligned_cols=79  Identities=15%  Similarity=0.085  Sum_probs=43.0

Q ss_pred             CEEEEEEEcCChhhhH----hhHHh---hcc-----cCCEEEEEEECCCh-hhHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q 029437           63 KIKFKAFDLGGHQIAR----RVWKD---YYA-----KVDAVVYLVDAYDK-ERFAESKKELDALLSDEALANVPFLVLGN  129 (193)
Q Consensus        63 ~~~~~~~D~~G~~~~~----~~~~~---~~~-----~~d~vl~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~pviiv~n  129 (193)
                      +..+.++||+|-....    ..+..   ..+     ..+-+++|+|+... +....+......+        -+-=+++|
T Consensus        91 ~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~--------~~~~lIlT  162 (211)
T d2qy9a2          91 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV--------GLTGITLT  162 (211)
T ss_dssp             TCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS--------CCCEEEEE
T ss_pred             CCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc--------CCceEEEe
Confidence            4578999999932221    11111   122     35789999999654 3333333333322        12368899


Q ss_pred             CCCCCCCC-CHHHHHHhhCCC
Q 029437          130 KIDIPYAA-SEEELRYHLGLS  149 (193)
Q Consensus       130 K~D~~~~~-~~~~~~~~~~~~  149 (193)
                      |.|..... ..-.+....+.+
T Consensus       163 KlDe~~~~G~~l~~~~~~~~P  183 (211)
T d2qy9a2         163 KLDGTAKGGVIFSVADQFGIP  183 (211)
T ss_dssp             CCTTCTTTTHHHHHHHHHCCC
T ss_pred             ecCCCCCccHHHHHHHHHCCC
Confidence            99987332 333444444433

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.37  E-value=6.6e-07  Score=61.66  Aligned_cols=24  Identities=29%  Similarity=0.402  Sum_probs=19.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHh
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~   41 (193)
                      .++..|+++|++|+||||.+-+|.
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345678999999999999987764

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.32  E-value=5e-07  Score=62.07  Aligned_cols=66  Identities=12%  Similarity=0.053  Sum_probs=37.5

Q ss_pred             CCEEEEEEEcCChhhhH----hhHHhh--cccCCEEEEEEECCChhh-HHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCC
Q 029437           62 GKIKFKAFDLGGHQIAR----RVWKDY--YAKVDAVVYLVDAYDKER-FAESKKELDALLSDEALANVPFLVLGNKIDIP  134 (193)
Q Consensus        62 ~~~~~~~~D~~G~~~~~----~~~~~~--~~~~d~vl~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  134 (193)
                      .+.++.++||+|-....    ..+...  ....+-+++|.|+..... ...+..+...+    .    +-=+++||.|..
T Consensus        91 ~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~----~----~~~~I~TKlDe~  162 (207)
T d1ls1a2          91 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV----G----VTGLVLTKLDGD  162 (207)
T ss_dssp             HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT----C----CCEEEEECGGGC
T ss_pred             ccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC----C----CCeeEEeecCcc
Confidence            34678999999942221    111111  235689999999976532 22222222222    1    124889999986


Q ss_pred             C
Q 029437          135 Y  135 (193)
Q Consensus       135 ~  135 (193)
                      .
T Consensus       163 ~  163 (207)
T d1ls1a2         163 A  163 (207)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.27  E-value=2.7e-06  Score=58.25  Aligned_cols=80  Identities=16%  Similarity=0.094  Sum_probs=46.4

Q ss_pred             CEEEEEEEcCChhhhH----hhHHhh---c-----ccCCEEEEEEECCCh-hhHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q 029437           63 KIKFKAFDLGGHQIAR----RVWKDY---Y-----AKVDAVVYLVDAYDK-ERFAESKKELDALLSDEALANVPFLVLGN  129 (193)
Q Consensus        63 ~~~~~~~D~~G~~~~~----~~~~~~---~-----~~~d~vl~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~pviiv~n  129 (193)
                      +..+.++||+|-....    ..+...   .     ...+-+++|+|+... +....+......+       + +-=+++|
T Consensus        88 ~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~-~~~lI~T  159 (207)
T d1okkd2          88 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV-------G-LTGVIVT  159 (207)
T ss_dssp             TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH-------C-CSEEEEE
T ss_pred             CCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc-------C-CceEEEe
Confidence            4678999999942221    111111   1     245789999999654 4445555544444       1 1157899


Q ss_pred             CCCCCC-CCCHHHHHHhhCCCc
Q 029437          130 KIDIPY-AASEEELRYHLGLSN  150 (193)
Q Consensus       130 K~D~~~-~~~~~~~~~~~~~~~  150 (193)
                      |.|... .-..-.+....+.+.
T Consensus       160 KlDet~~~G~~l~~~~~~~~Pi  181 (207)
T d1okkd2         160 KLDGTAKGGVLIPIVRTLKVPI  181 (207)
T ss_dssp             CTTSSCCCTTHHHHHHHHCCCE
T ss_pred             ccCCCCCccHHHHHHHHHCCCE
Confidence            999873 334445555555443

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.26  E-value=2.1e-06  Score=58.99  Aligned_cols=66  Identities=20%  Similarity=0.113  Sum_probs=37.0

Q ss_pred             CCEEEEEEEcCChhhhH------hhHHhh--cccCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCC
Q 029437           62 GKIKFKAFDLGGHQIAR------RVWKDY--YAKVDAVVYLVDAYDKE-RFAESKKELDALLSDEALANVPFLVLGNKID  132 (193)
Q Consensus        62 ~~~~~~~~D~~G~~~~~------~~~~~~--~~~~d~vl~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D  132 (193)
                      .+..+.++||+|-..+.      ..+...  .-..+-+++|++++... ....+.......       + +--+++||.|
T Consensus        93 ~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~~-------~-~~~lI~TKlD  164 (211)
T d1j8yf2          93 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQAS-------K-IGTIIITKMD  164 (211)
T ss_dssp             TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHHC-------T-TEEEEEECTT
T ss_pred             cCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhccc-------C-cceEEEeccc
Confidence            45689999999942211      111111  12467899999996643 233333222221       2 2247799999


Q ss_pred             CCC
Q 029437          133 IPY  135 (193)
Q Consensus       133 ~~~  135 (193)
                      ...
T Consensus       165 et~  167 (211)
T d1j8yf2         165 GTA  167 (211)
T ss_dssp             SCS
T ss_pred             CCC
Confidence            863

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.26  E-value=3e-07  Score=63.97  Aligned_cols=90  Identities=13%  Similarity=0.070  Sum_probs=60.9

Q ss_pred             hcccCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCCCCCCCCHHHHHHhhCCCccccCCCccccCC
Q 029437           84 YYAKVDAVVYLVDAYDKE-RFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLAD  162 (193)
Q Consensus        84 ~~~~~d~vl~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (193)
                      .+.+.|.+++|+++.+|+ +...+.+++.....    .+++.++|+||+|+.......+....+...+.           
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~-----------   71 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYAEDYR-----------   71 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHH-----------
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHHH----cCCCEEEEEecccccccHHHHHHHHHHHHHHh-----------
Confidence            346889999999997763 45566666555533    48999999999999854333322222211110           


Q ss_pred             CCCcceEEEEeeeecCCChhhHHHhhhh
Q 029437          163 SNVRPLEVFMCSIVRKMGYGDGFKWLSQ  190 (193)
Q Consensus       163 ~~~~~~~~~~~Sa~~g~gv~el~~~i~~  190 (193)
                        ....+++.+|++++.|++++.++|..
T Consensus        72 --~~g~~v~~~Sa~~~~gl~~L~~~l~~   97 (231)
T d1t9ha2          72 --NIGYDVYLTSSKDQDSLADIIPHFQD   97 (231)
T ss_dssp             --HHTCCEEECCHHHHTTCTTTGGGGTT
T ss_pred             --hccccceeeecCChhHHHHHHHhhcc
Confidence              01357899999999999999888754

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.19  E-value=3.8e-07  Score=60.98  Aligned_cols=23  Identities=35%  Similarity=0.531  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      +||+|+|++|||||||++.+.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            48999999999999999998753

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.19  E-value=1.2e-07  Score=65.95  Aligned_cols=55  Identities=18%  Similarity=0.226  Sum_probs=32.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccC-----------CCCCcceeEEEeCCEEEEEEEcCChhhh
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-----------PTQYPTSEELSIGKIKFKAFDLGGHQIA   77 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-----------~t~~~~~~~~~~~~~~~~~~D~~G~~~~   77 (193)
                      +.-..+++|++|+|||||+|+|.......+.           .|.....  +..++.  -++||||...+
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l--~~~~gg--~iiDTPG~r~~  161 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHTSGG--LVADTPGFSSL  161 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EEETTE--EEESSCSCSSC
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEE--EecCCC--EEEECCccccc
Confidence            3456789999999999999999876433211           1222222  223432  47899996544

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.02  E-value=1.7e-06  Score=57.37  Aligned_cols=25  Identities=32%  Similarity=0.504  Sum_probs=22.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ++.++|+|+|+|||||||+.+.|..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            4678999999999999999999964

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.98  E-value=1.8e-06  Score=57.08  Aligned_cols=23  Identities=39%  Similarity=0.424  Sum_probs=20.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      -.+|+|+|+|||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999853

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.95  E-value=1.7e-06  Score=57.83  Aligned_cols=22  Identities=27%  Similarity=0.511  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .+|+|+|++|||||||+++|..
T Consensus         8 K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999964

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.91  E-value=3.1e-06  Score=54.84  Aligned_cols=20  Identities=30%  Similarity=0.411  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 029437           23 ILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~~   42 (193)
                      |+++|+|||||||+++.+..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999999854

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.90  E-value=8.3e-06  Score=54.94  Aligned_cols=37  Identities=24%  Similarity=0.347  Sum_probs=29.1

Q ss_pred             HHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHh
Q 029437            4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~   41 (193)
                      ++++..-..+.. ....+-|+|.|++|||||||.+.|.
T Consensus         7 ~~~~~~~~~~~~-~~~~~iIgI~G~~GSGKSTla~~L~   43 (198)
T d1rz3a_           7 IDFLCKTILAIK-TAGRLVLGIDGLSRSGKTTLANQLS   43 (198)
T ss_dssp             HHHHHHHHHTSC-CSSSEEEEEEECTTSSHHHHHHHHH
T ss_pred             HHHHHHHHHhcc-CCCCEEEEEECCCCCCHHHHHHHHH
Confidence            566666665544 4456789999999999999999985

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=3.7e-06  Score=55.36  Aligned_cols=21  Identities=38%  Similarity=0.474  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      -|+|+|++|||||||++++..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999999975

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.84  E-value=5.4e-06  Score=55.91  Aligned_cols=24  Identities=33%  Similarity=0.398  Sum_probs=21.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      +.++|+++|+|||||||....|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999999863

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.83  E-value=6e-06  Score=54.74  Aligned_cols=26  Identities=23%  Similarity=0.317  Sum_probs=22.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .++.+.|.++|.|||||||+.+.|..
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            45668899999999999999988863

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.81  E-value=4.7e-06  Score=56.21  Aligned_cols=24  Identities=25%  Similarity=0.412  Sum_probs=20.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ++++|+|+|+|||||||+...|..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999998853

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.81  E-value=5.4e-06  Score=55.36  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      +||+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998853

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=97.80  E-value=9.6e-06  Score=54.78  Aligned_cols=41  Identities=17%  Similarity=0.166  Sum_probs=33.0

Q ss_pred             chHHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437            2 FLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      +++.|+..+..+.++..+.-.+++.||+++|||.++.++..
T Consensus        35 ~~~~Fl~~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          35 EFITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             CHHHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCCceEEEEECCCCccHHHHHHHHHH
Confidence            45666666666666677778899999999999999998764

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.78  E-value=9.6e-06  Score=57.52  Aligned_cols=34  Identities=21%  Similarity=0.278  Sum_probs=25.5

Q ss_pred             HHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           10 VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        10 ~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ++......+...-|++.||||||||||+.++...
T Consensus        22 ~~~~~~~~~~P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          22 LIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             HHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             HHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3444444455556999999999999999998653

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.77  E-value=1.5e-05  Score=55.31  Aligned_cols=26  Identities=19%  Similarity=0.359  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      +.-.++++|++|||||||++.+.+-.
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          30 EGEFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCcchhhHhccCCC
Confidence            34468999999999999999988754

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.76  E-value=1.4e-05  Score=54.38  Aligned_cols=24  Identities=33%  Similarity=0.419  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      -.++++|++|||||||++.+.+-.
T Consensus        28 ei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          28 NVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhccc
Confidence            358999999999999999998743

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=1.5e-05  Score=55.85  Aligned_cols=26  Identities=23%  Similarity=0.335  Sum_probs=22.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      +.-+++|+|++|||||||++.+.+--
T Consensus        28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          28 QGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            44579999999999999999998754

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.76  E-value=1e-05  Score=54.61  Aligned_cols=24  Identities=17%  Similarity=0.304  Sum_probs=21.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      +.++|+|+|+|||||||+...|..
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHH
Confidence            446999999999999999999864

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.74  E-value=8.6e-06  Score=54.44  Aligned_cols=22  Identities=36%  Similarity=0.498  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ++|+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999853

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.74  E-value=8.5e-06  Score=54.56  Aligned_cols=22  Identities=32%  Similarity=0.521  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ++|+|+|+|||||||+...|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.73  E-value=7.6e-06  Score=53.88  Aligned_cols=21  Identities=24%  Similarity=0.278  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      -|+|+|+|||||||++++|..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999999864

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.72  E-value=1.8e-05  Score=55.21  Aligned_cols=39  Identities=23%  Similarity=0.256  Sum_probs=28.8

Q ss_pred             HHHHHHHHHhhCC-CCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437            4 LDWFYGVLASLGL-WQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus         4 ~~~~~~~~~~~~~-~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      +.-++.|..+.+. ......+++.||||+||||+++.+..
T Consensus        18 ~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          18 KQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             HHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            3455566655443 33456799999999999999999875

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=7.5e-06  Score=53.37  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      +|+++|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999864

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.71  E-value=2.6e-05  Score=55.01  Aligned_cols=26  Identities=15%  Similarity=0.328  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      +.-.++|+|++|||||||++.+.+-.
T Consensus        40 ~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          40 AGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhccc
Confidence            34579999999999999999998643

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.71  E-value=1.1e-05  Score=53.94  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=20.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .++|+|+|+|||||||+.+.|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999864

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.70  E-value=2.4e-05  Score=54.49  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .++++||+|||||||++.+.+-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            46799999999999999998754

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.69  E-value=3.5e-05  Score=53.73  Aligned_cols=25  Identities=32%  Similarity=0.473  Sum_probs=21.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .-.++++|++|||||||++.+.+-.
T Consensus        29 Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          29 GEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCC
Confidence            3468999999999999999998754

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=1.1e-05  Score=53.82  Aligned_cols=21  Identities=33%  Similarity=0.513  Sum_probs=19.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHh
Q 029437           21 AKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~   41 (193)
                      ++|+|+|+|||||||..+.|.
T Consensus         1 m~I~i~G~pGSGKsT~~~~La   21 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIM   21 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            489999999999999998884

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=9.2e-06  Score=53.98  Aligned_cols=20  Identities=35%  Similarity=0.594  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029437           22 KILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~   41 (193)
                      +|+|+|+||+|||||+..+.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~   22 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKAS   22 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            58999999999999999986

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=3.1e-05  Score=54.00  Aligned_cols=38  Identities=21%  Similarity=0.255  Sum_probs=28.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEE
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIK   65 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~   65 (193)
                      .-.++++|++|||||||++.+.+-.        .++.+.+.+.+..
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~Gl~--------~p~sG~I~~~g~~   68 (240)
T d3dhwc1          31 GQIYGVIGASGAGKSTLIRCVNLLE--------RPTEGSVLVDGQE   68 (240)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHTTSS--------CCSEEEEEETTEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCc--------cccCCceEEcCeE
Confidence            3468999999999999999998754        2345666666543

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.68  E-value=1.3e-05  Score=54.11  Aligned_cols=23  Identities=22%  Similarity=0.228  Sum_probs=19.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ...|+|+|+|||||||+.+.|..
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999999854

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.67  E-value=4.7e-05  Score=55.62  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      +|+|+|+.||||||+++++...
T Consensus       168 nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGG
T ss_pred             CEEEEeeccccchHHHHHHhhh
Confidence            6999999999999999999854

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=3.6e-05  Score=51.85  Aligned_cols=34  Identities=18%  Similarity=0.304  Sum_probs=24.5

Q ss_pred             HHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           10 VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        10 ~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      +...+. ++..-+++++|+||+|||+++..+...-
T Consensus        34 l~~iL~-r~~k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          34 TIQVLQ-RRTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             HHHHHT-SSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHh-ccCCCCeEEEecCCcccHHHHHHHHHHH
Confidence            333344 3334589999999999999998886543

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=3.2e-05  Score=54.44  Aligned_cols=26  Identities=19%  Similarity=0.340  Sum_probs=22.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      +.-.++|+|++|||||||++.+.+--
T Consensus        39 ~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          39 PGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhccc
Confidence            44579999999999999999998744

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.65  E-value=1.1e-05  Score=53.23  Aligned_cols=22  Identities=32%  Similarity=0.530  Sum_probs=19.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .+|+++|++||||||+.+.+..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999988853

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.64  E-value=3.3e-05  Score=53.83  Aligned_cols=25  Identities=32%  Similarity=0.464  Sum_probs=21.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .-.++++|++|||||||++.+.+-.
T Consensus        32 Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          32 GEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCC
Confidence            3468999999999999999998754

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.63  E-value=2e-05  Score=54.91  Aligned_cols=38  Identities=24%  Similarity=0.235  Sum_probs=26.1

Q ss_pred             HHHHHHHHhhC-CCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437            5 DWFYGVLASLG-LWQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .-++.|+.... .......+++.||||+||||+++.+..
T Consensus        19 ~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          19 KKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             HHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHh
Confidence            34444443322 223345799999999999999999865

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.63  E-value=2.6e-05  Score=54.67  Aligned_cols=26  Identities=27%  Similarity=0.437  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      +.-.++|+|++|||||||++.+.+-.
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            44579999999999999999997654

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.63  E-value=3.6e-05  Score=54.29  Aligned_cols=38  Identities=26%  Similarity=0.220  Sum_probs=28.0

Q ss_pred             hHHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437            3 LLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      +.+++..++...+.  ..-.++|.|+||+|||++++.+..
T Consensus        28 l~~~l~~~l~~~~~--~~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          28 LDILLGNWLRNPGH--HYPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             HHHHHHHHHHSTTS--SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCC--CCCceEEECCCCCCHHHHHHHHHH
Confidence            45666666654432  334799999999999999998864

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=1.2e-05  Score=54.13  Aligned_cols=25  Identities=32%  Similarity=0.498  Sum_probs=21.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .+...|.++|+|||||||+.+.|..
T Consensus        17 ~~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          17 FRGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999999854

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.62  E-value=2.6e-05  Score=54.77  Aligned_cols=24  Identities=29%  Similarity=0.409  Sum_probs=21.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ...+++.||||+||||+++.+...
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999999764

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.62  E-value=3.6e-05  Score=53.85  Aligned_cols=24  Identities=29%  Similarity=0.404  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      --++++||+|||||||++.+.+-.
T Consensus        33 ei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          33 QIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            468999999999999999998754

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.61  E-value=1.5e-05  Score=52.47  Aligned_cols=20  Identities=30%  Similarity=0.431  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 029437           23 ILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~~   42 (193)
                      |.|+|.+|||||||++++..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            57999999999999999864

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=4e-05  Score=53.18  Aligned_cols=25  Identities=32%  Similarity=0.562  Sum_probs=21.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .-.++++|++|||||||++.+.+-.
T Consensus        26 Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          26 GEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCC
Confidence            3468999999999999999997654

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.59  E-value=1.5e-05  Score=52.30  Aligned_cols=20  Identities=40%  Similarity=0.727  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029437           22 KILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~   41 (193)
                      +|+++|+|||||||+.+.+.
T Consensus         2 ~I~liG~~GsGKsTi~k~La   21 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALA   21 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999884

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.58  E-value=2.3e-05  Score=55.07  Aligned_cols=24  Identities=25%  Similarity=0.385  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ....|++.||||+|||++++++..
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhh
Confidence            345799999999999999999875

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=2.2e-05  Score=52.92  Aligned_cols=21  Identities=29%  Similarity=0.276  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHh
Q 029437           21 AKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~   41 (193)
                      +.|+|+|+|||||||....+.
T Consensus         2 ~iI~i~GppGSGKsT~a~~La   22 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIV   22 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            679999999999999999885

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.56  E-value=3e-05  Score=53.71  Aligned_cols=25  Identities=28%  Similarity=0.420  Sum_probs=21.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .--++++|++|||||||++.+.+-.
T Consensus        26 Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          26 GEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCc
Confidence            3458999999999999999998854

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.56  E-value=4.8e-05  Score=52.70  Aligned_cols=35  Identities=23%  Similarity=0.247  Sum_probs=26.8

Q ss_pred             HHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437            4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      +..++.|++..+    ...+++.||+|+||||+++.+..
T Consensus        33 ~~~l~~~i~~~~----~~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          33 VKRLKHYVKTGS----MPHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             HHHHHHHHHHTC----CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC----CCeEEEECCCCCcHHHHHHHHHH
Confidence            455666765443    23699999999999999998865

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.54  E-value=3.6e-05  Score=53.73  Aligned_cols=25  Identities=28%  Similarity=0.444  Sum_probs=22.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .-.++++|++|||||||++.+.+-.
T Consensus        31 Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          31 GERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCc
Confidence            4479999999999999999998854

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.54  E-value=2.6e-05  Score=53.65  Aligned_cols=24  Identities=25%  Similarity=0.397  Sum_probs=21.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHh
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~   41 (193)
                      |+.++|+|-|||||||||....|.
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La   24 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIA   24 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHH
Confidence            456889999999999999999985

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=0.00015  Score=51.39  Aligned_cols=27  Identities=22%  Similarity=0.298  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERL   45 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~   45 (193)
                      ..-+++++|+||+|||++++.+...-.
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~ri~   64 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWRIV   64 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHHHH
Confidence            345899999999999999998865433

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.53  E-value=5.4e-05  Score=53.36  Aligned_cols=24  Identities=25%  Similarity=0.466  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      --++++|++|||||||++.+.+..
T Consensus        31 ei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          31 DVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHCCC
Confidence            358999999999999999998854

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.53  E-value=6.7e-05  Score=52.34  Aligned_cols=25  Identities=28%  Similarity=0.349  Sum_probs=21.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .-.++++|++|||||||++.+.+..
T Consensus        28 Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          28 GEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468999999999999999998764

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.52  E-value=2.3e-05  Score=52.05  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=20.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ...-|+++|.|||||||++.++..
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            445689999999999999999864

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.52  E-value=2.9e-05  Score=54.59  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .-.+++.||||+|||++++++..
T Consensus        42 ~~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEecCCCCChhHHHHHHHH
Confidence            34699999999999999999985

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.51  E-value=3.2e-05  Score=50.94  Aligned_cols=23  Identities=26%  Similarity=0.413  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .-|+|.|++||||||+.+.|...
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35788899999999999998653

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.51  E-value=2.8e-05  Score=51.26  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      -|++.|+|||||||+.+.+...
T Consensus         6 iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999998653

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.49  E-value=4.1e-05  Score=53.97  Aligned_cols=26  Identities=27%  Similarity=0.575  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      +.-+++|+|++|||||||++.+.+-.
T Consensus        43 ~Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          43 KGETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhcC
Confidence            44589999999999999999887643

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=2.7e-05  Score=51.13  Aligned_cols=21  Identities=14%  Similarity=0.419  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      -++++|+|||||||+.+.|..
T Consensus         8 iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467799999999999999864

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.47  E-value=3e-05  Score=52.04  Aligned_cols=21  Identities=43%  Similarity=0.564  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029437           23 ILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~~~   43 (193)
                      |+|+||+|||||||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999998643

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.47  E-value=2.9e-05  Score=51.61  Aligned_cols=20  Identities=20%  Similarity=0.320  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029437           22 KILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~   41 (193)
                      -|+|.|++||||||+++.|.
T Consensus         3 iI~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58899999999999999884

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.46  E-value=7.4e-05  Score=52.73  Aligned_cols=26  Identities=23%  Similarity=0.324  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      +.-.++|+|++|||||||++.+.+-.
T Consensus        27 ~GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          27 AGDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            33469999999999999999998754

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=2.7e-05  Score=55.05  Aligned_cols=23  Identities=26%  Similarity=0.426  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .-.+++.||||+|||++++++..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHH
Confidence            34699999999999999999975

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.42  E-value=3.7e-05  Score=52.29  Aligned_cols=22  Identities=32%  Similarity=0.468  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .-|+++|.|||||||+.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999999874

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.42  E-value=3.7e-05  Score=51.31  Aligned_cols=22  Identities=23%  Similarity=0.525  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      -|+|+||+||||||+++.+...
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3789999999999999998643

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.40  E-value=5e-05  Score=54.36  Aligned_cols=26  Identities=31%  Similarity=0.434  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      +.-.++|+|++|||||||++.+.+.-
T Consensus        61 ~Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          61 KGEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCC
Confidence            44579999999999999999998643

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=4.1e-05  Score=51.68  Aligned_cols=23  Identities=35%  Similarity=0.317  Sum_probs=20.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ...|+|+|+|||||||+...|..
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            44689999999999999999864

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.39  E-value=3.8e-05  Score=50.70  Aligned_cols=20  Identities=30%  Similarity=0.411  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029437           22 KILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~   41 (193)
                      .|+++|++||||||+.+.+.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHH
Confidence            47889999999999999984

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=4.9e-05  Score=51.97  Aligned_cols=22  Identities=18%  Similarity=0.119  Sum_probs=19.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHh
Q 029437           20 EAKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~   41 (193)
                      ++-|+|.|++||||||+.+.|.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~   23 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIV   23 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            5779999999999999999874

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.00016  Score=51.61  Aligned_cols=57  Identities=16%  Similarity=0.041  Sum_probs=38.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cC-----CCCCcceeEEE---eCCEEEEEEEcCChh
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQ-----PTQYPTSEELS---IGKIKFKAFDLGGHQ   75 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~-----~t~~~~~~~~~---~~~~~~~~~D~~G~~   75 (193)
                      +-.-|.|+|+.++|||+|+|.+.+..+.- ..     .|.|.-.....   ..+..+.++||.|..
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccc
Confidence            34478999999999999999999876421 11     23343222221   235689999999953

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.38  E-value=7.1e-05  Score=51.56  Aligned_cols=35  Identities=23%  Similarity=0.365  Sum_probs=25.8

Q ss_pred             HHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437            4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      +..++.|+..-.    ..++++.||+|+||||+++.+..
T Consensus        24 ~~~L~~~~~~~~----~~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          24 IDRLQQIAKDGN----MPHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             HHHHHHHHHSCC----CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC----CCeEEEECCCCCCchhhHHHHHH
Confidence            456666664322    23699999999999999988754

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.36  E-value=4.9e-05  Score=51.24  Aligned_cols=22  Identities=23%  Similarity=0.267  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..|+|+|+|||||||+...|..
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999999854

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.35  E-value=5.2e-05  Score=51.03  Aligned_cols=20  Identities=40%  Similarity=0.584  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 029437           23 ILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~~   42 (193)
                      |+|+||+|||||||++.|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999853

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=3.5e-05  Score=53.60  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=21.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .--++++|++|||||||++.+.+-
T Consensus        25 Gei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          25 GEILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             TCEEECBCCTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            346899999999999999999874

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.34  E-value=0.00011  Score=52.08  Aligned_cols=21  Identities=29%  Similarity=0.219  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029437           23 ILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~~~   43 (193)
                      +++.||||+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            455799999999999998643

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=0.0021  Score=43.54  Aligned_cols=36  Identities=22%  Similarity=0.278  Sum_probs=25.8

Q ss_pred             HHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437            7 FYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ++.+.......+..-.+++.|++|+||||++..+..
T Consensus        11 ~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          11 FEKLVASYQAGRGHHALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             HHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHH
Confidence            444544444444444599999999999999997754

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=5.9e-05  Score=50.25  Aligned_cols=22  Identities=18%  Similarity=0.459  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      -|+|+||+|+||+||+++|...
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHh
Confidence            3889999999999999998743

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.30  E-value=0.00017  Score=51.45  Aligned_cols=24  Identities=21%  Similarity=0.182  Sum_probs=21.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHH
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHML   40 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l   40 (193)
                      .+..+-|+|.|++|||||||...+
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l   47 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQI   47 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHH
Confidence            456788999999999999999776

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=6.9e-05  Score=51.11  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029437           22 KILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      =|+|+||+|||||||++.+...
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999999754

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.28  E-value=0.0001  Score=50.72  Aligned_cols=35  Identities=20%  Similarity=0.242  Sum_probs=26.3

Q ss_pred             HHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437            4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      +..++.|...-+    ..++++.||+|+||||++..+..
T Consensus        23 ~~~L~~~i~~~~----~~~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          23 ITTVRKFVDEGK----LPHLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             HHHHHHHHHTTC----CCCEEEECSSSSSHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC----CCeEEEECCCCCChhHHHHHHHH
Confidence            456666664322    23589999999999999999875

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.27  E-value=8.4e-05  Score=49.85  Aligned_cols=25  Identities=24%  Similarity=0.230  Sum_probs=21.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .++-|+|+|.+||||||+.+.|...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            4678999999999999999988643

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.23  E-value=0.0037  Score=42.65  Aligned_cols=80  Identities=10%  Similarity=0.014  Sum_probs=51.0

Q ss_pred             EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEE-EEEeCCCCCCCC-CHHH
Q 029437           64 IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFL-VLGNKIDIPYAA-SEEE  141 (193)
Q Consensus        64 ~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pvi-iv~nK~D~~~~~-~~~~  141 (193)
                      +.+.++|+++....  .....+..+|.++++... +..++....+....+.+    .+.|++ +++||.|..... ....
T Consensus       112 ~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~~~~----~~~~~~giv~N~~~~~~~~~~~~~  184 (237)
T d1g3qa_         112 FDFILIDCPAGLQL--DAMSAMLSGEEALLVTNP-EISCLTDTMKVGIVLKK----AGLAILGFVLNRYGRSDRDIPPEA  184 (237)
T ss_dssp             CSEEEEECCSSSSH--HHHHHHTTCSEEEEEECS-CHHHHHHHHHHHHHHHH----TTCEEEEEEEEEETSCTTCCCHHH
T ss_pred             CCEEEEcccccccc--cchhhhhhhhcccccccc-cceecchhhHHHHHHhh----hhhhhhhhhhcccccccchhhhHH
Confidence            57899999986533  233345679999999987 45556666666554432    366766 899999876433 3334


Q ss_pred             HHHhhCCCc
Q 029437          142 LRYHLGLSN  150 (193)
Q Consensus       142 ~~~~~~~~~  150 (193)
                      ..+..+...
T Consensus       185 ~~~~~~~~~  193 (237)
T d1g3qa_         185 AEDVMEVPL  193 (237)
T ss_dssp             HHHHHCSCE
T ss_pred             HHhhcCceE
Confidence            444444433

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=0.00013  Score=50.36  Aligned_cols=23  Identities=35%  Similarity=0.579  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .++++.||+|+||||+++.+...
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHH
Confidence            35899999999999999998753

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.22  E-value=8.3e-05  Score=49.48  Aligned_cols=19  Identities=32%  Similarity=0.504  Sum_probs=16.7

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 029437           23 ILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~   41 (193)
                      |+|.|.+||||||+++.|.
T Consensus         4 ivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4568999999999999885

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=0.001  Score=46.06  Aligned_cols=37  Identities=24%  Similarity=0.275  Sum_probs=26.5

Q ss_pred             hHHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437            3 LLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .+++++.|...-+   ..-.+++.||+|+||||+++.+..
T Consensus        20 ~~~~L~~~i~~~~---~~~~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          20 VLTALANGLSLGR---IHHAYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             HHHHHHHHHHTTC---CCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC---CCeeEEEECCCCCcHHHHHHHHHH
Confidence            3566777765432   223489999999999999988753

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.16  E-value=0.00017  Score=50.34  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=20.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..++++.||+|+||||+++.+..
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34699999999999999998865

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.14  E-value=0.00012  Score=50.03  Aligned_cols=26  Identities=35%  Similarity=0.437  Sum_probs=22.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..+...|.++|.|||||||+.+.|..
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            56677899999999999999999864

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.12  E-value=0.00025  Score=52.43  Aligned_cols=36  Identities=31%  Similarity=0.332  Sum_probs=26.4

Q ss_pred             HHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437            4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .+|++.++.   +..+.-.+++.||||+|||++..++..
T Consensus       141 ~~~l~~~~~---~~~~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         141 YDFLKCMVY---NIPKKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             HHHHHHHHH---CCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHh---CCCCcCeEEEECCCCCCHHHHHHHHHH
Confidence            345555442   334445799999999999999999865

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.12  E-value=0.00011  Score=53.23  Aligned_cols=22  Identities=32%  Similarity=0.522  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      -.++++||||||||.|++++..
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhh
Confidence            4689999999999999999875

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.09  E-value=0.00059  Score=50.82  Aligned_cols=24  Identities=21%  Similarity=0.398  Sum_probs=19.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .-+++++|+||+|||+++..+...
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~~   66 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHHH
Confidence            346789999999999999766543

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.06  E-value=0.00021  Score=50.38  Aligned_cols=25  Identities=28%  Similarity=0.421  Sum_probs=21.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ..-.+++.||||+|||++++++...
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceeEEecCCCCCchHHHHHHHHH
Confidence            3446999999999999999998763

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00036  Score=50.34  Aligned_cols=27  Identities=22%  Similarity=0.126  Sum_probs=22.7

Q ss_pred             CCCCCccEEEEEcCCCCCHHHHHHHHh
Q 029437           15 GLWQKEAKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        15 ~~~~~~~~i~v~G~~~~GKssl~~~l~   41 (193)
                      ...+..+-|+|.|++||||||+.+.|.
T Consensus        75 ~~~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          75 NGQRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             C-CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             cCCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            345678999999999999999998874

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.01  E-value=0.00045  Score=47.21  Aligned_cols=38  Identities=29%  Similarity=0.371  Sum_probs=28.5

Q ss_pred             HHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437            4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .++++.+.++.+..-.  -+.+.|++|+|||.|++++...
T Consensus        22 ~~~~~~~~~~~~~~~n--~l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          22 YEVVKEALENLGSLYN--PIFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             HHHHHHHHHTTTTSCS--SEEEECSSSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcCCCCC--cEEEECCCCCcHHHHHHHHHHH
Confidence            4566777766653321  2889999999999999998764

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.00  E-value=0.0002  Score=48.08  Aligned_cols=26  Identities=27%  Similarity=0.307  Sum_probs=22.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .++++-|+|-|..||||||+++.|..
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHH
Confidence            45667899999999999999999864

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=96.90  E-value=0.0008  Score=47.56  Aligned_cols=39  Identities=18%  Similarity=0.145  Sum_probs=28.5

Q ss_pred             HHHHHHHHHhh-CCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437            4 LDWFYGVLASL-GLWQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus         4 ~~~~~~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      +.|...+..++ +...++..+.+.|++++|||+|++.+..
T Consensus        87 ~~f~~~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_          87 QYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             HHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHH
Confidence            34444444444 3456677899999999999999999864

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.00027  Score=48.21  Aligned_cols=21  Identities=33%  Similarity=0.387  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      -|+|.|||||||+|+...|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578889999999999999853

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.85  E-value=0.00028  Score=49.60  Aligned_cols=21  Identities=29%  Similarity=0.537  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .++|.|++|+|||||++.+..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            688999999999999998753

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.70  E-value=0.00027  Score=50.44  Aligned_cols=23  Identities=30%  Similarity=0.416  Sum_probs=16.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHh
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~   41 (193)
                      ++.-|+|.|++||||||+.+++.
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHH
Confidence            44569999999999999998863

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.64  E-value=0.00059  Score=48.18  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=22.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .....|++.|+||+|||+|++++...
T Consensus        39 ~~~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          39 TPSKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCCCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcchhHHHHHHHH
Confidence            34457999999999999999999763

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.63  E-value=0.00043  Score=52.54  Aligned_cols=22  Identities=32%  Similarity=0.507  Sum_probs=19.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHh
Q 029437           20 EAKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~   41 (193)
                      +-+|+++||+|||||-|+++|.
T Consensus        49 ksNILliGPTGvGKTlLAr~LA   70 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLA   70 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHH
Confidence            3489999999999999999985

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.60  E-value=0.001  Score=49.86  Aligned_cols=21  Identities=38%  Similarity=0.385  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029437           23 ILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~~~   43 (193)
                      |+|.|+.||||||.+..+...
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            999999999999999998753

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.00072  Score=45.89  Aligned_cols=24  Identities=21%  Similarity=0.218  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      +-|+|+|.+||||||+.+.+....
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G   27 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLG   27 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCC
Confidence            568999999999999999886443

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.56  E-value=0.00084  Score=45.41  Aligned_cols=23  Identities=26%  Similarity=0.283  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      +-|+|+|..||||||+.+.+...
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            56999999999999999988643

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.56  E-value=0.013  Score=37.66  Aligned_cols=26  Identities=31%  Similarity=0.279  Sum_probs=21.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      +...-|++.|+-|||||||++.+...
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhh
Confidence            44567999999999999999998644

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.53  E-value=0.0063  Score=42.56  Aligned_cols=86  Identities=8%  Similarity=0.093  Sum_probs=46.6

Q ss_pred             EEEEEEEcCChhhhHh-hHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcE-EEEEeCCCCCCCCC-HH
Q 029437           64 IKFKAFDLGGHQIARR-VWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPF-LVLGNKIDIPYAAS-EE  140 (193)
Q Consensus        64 ~~~~~~D~~G~~~~~~-~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pv-iiv~nK~D~~~~~~-~~  140 (193)
                      ..+.++|+|+...... ........+|.++++.+. +..++.........+-......+.++ -++.|+.+...... .+
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~~~~~~  194 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANEYELLD  194 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCHHHHH
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCccchhh
Confidence            5689999987443222 222223457888877776 55556555554444322122233433 37889988764322 33


Q ss_pred             HHHHhhCCCc
Q 029437          141 ELRYHLGLSN  150 (193)
Q Consensus       141 ~~~~~~~~~~  150 (193)
                      ++.+.++.+.
T Consensus       195 ~~~~~~~~~~  204 (269)
T d1cp2a_         195 AFAKELGSQL  204 (269)
T ss_dssp             HHHHHHTCCE
T ss_pred             hhHhhcCCeE
Confidence            4555565544

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.49  E-value=0.00083  Score=45.27  Aligned_cols=21  Identities=43%  Similarity=0.570  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998763

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.0021  Score=46.45  Aligned_cols=21  Identities=33%  Similarity=0.477  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .++++||+|+|||.|+..+..
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHh
Confidence            689999999999999999854

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.00092  Score=45.04  Aligned_cols=26  Identities=23%  Similarity=0.258  Sum_probs=21.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ...--+.|.|+||+|||+|+.++...
T Consensus        21 ~~G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          21 ETGSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            44456899999999999999888643

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.32  E-value=0.0012  Score=43.56  Aligned_cols=24  Identities=21%  Similarity=0.217  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .=|++.|++|+||||+.-.+....
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            458999999999999999887544

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.28  E-value=0.0013  Score=43.33  Aligned_cols=24  Identities=21%  Similarity=0.286  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           21 AKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .=+++.|++|+||||+...+....
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            458999999999999999987654

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.28  E-value=0.0011  Score=45.63  Aligned_cols=27  Identities=22%  Similarity=0.224  Sum_probs=21.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      -...--+.|.|+||+|||+|+.++...
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            345556899999999999999988643

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.26  E-value=0.0012  Score=44.63  Aligned_cols=20  Identities=40%  Similarity=0.619  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 029437           23 ILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~~   42 (193)
                      |+|-|+.||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999998753

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.25  E-value=0.00056  Score=49.85  Aligned_cols=20  Identities=30%  Similarity=0.489  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029437           22 KILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~   41 (193)
                      ++++.|+||+|||+|++++.
T Consensus        30 ~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHH
Confidence            69999999999999999885

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.24  E-value=0.025  Score=38.21  Aligned_cols=80  Identities=11%  Similarity=0.006  Sum_probs=45.4

Q ss_pred             EEEEEEEcCChhhhHhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcE-EEEEeCCCCCCC-CCHHH
Q 029437           64 IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPF-LVLGNKIDIPYA-ASEEE  141 (193)
Q Consensus        64 ~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pv-iiv~nK~D~~~~-~~~~~  141 (193)
                      +++.++|+|+.....  ....+..+|.+++|... +..++....+..... +.   .+.++ -+++||.+.... ....+
T Consensus       110 ~D~viiD~~~~~~~~--~~~~l~~ad~v~~v~~~-~~~~~~~~~~~~~~~-~~---~~~~~~~iv~N~~~~~~~~~~~~~  182 (232)
T d1hyqa_         110 TDILLLDAPAGLERS--AVIAIAAAQELLLVVNP-EISSITDGLKTKIVA-ER---LGTKVLGVVVNRITTLGIEMAKNE  182 (232)
T ss_dssp             CSEEEEECCSSSSHH--HHHHHHHSSEEEEEECS-SHHHHHHHHHHHHHH-HH---HTCEEEEEEEEEECTTTHHHHHHH
T ss_pred             cceeeecccccccch--hHHHhhhhheeeeeccc-cccchhhhhhhhhhh-hh---cccccccccccccccccccchhhh
Confidence            557889998865332  23344568999999887 444444444443333 22   13443 478999875421 22344


Q ss_pred             HHHhhCCCc
Q 029437          142 LRYHLGLSN  150 (193)
Q Consensus       142 ~~~~~~~~~  150 (193)
                      +.+.++.+.
T Consensus       183 i~~~~~~~~  191 (232)
T d1hyqa_         183 IEAILEAKV  191 (232)
T ss_dssp             HHHHTTSCE
T ss_pred             HHhhcCCeE
Confidence            565565544

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.24  E-value=0.0015  Score=39.96  Aligned_cols=26  Identities=12%  Similarity=-0.061  Sum_probs=23.6

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHh
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~   41 (193)
                      +.++.+.|.+.|.+|+|||++.++|.
T Consensus         2 r~kqgf~i~~tg~~~~gk~~ia~al~   27 (122)
T d1g8fa3           2 RPKQGFSIVLGNSLTVSREQLSIALL   27 (122)
T ss_dssp             GGGCCEEEEECTTCCSCHHHHHHHHH
T ss_pred             CCccceEEEEeCCCCCCHHHHHHHHH
Confidence            46788999999999999999999985

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.21  E-value=0.018  Score=38.49  Aligned_cols=35  Identities=17%  Similarity=0.136  Sum_probs=27.3

Q ss_pred             HHHHHHHHHhhCCCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437            4 LDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      +.+++++.+    ......+++.|++|+|||+++..+..
T Consensus         3 ~~~l~~~i~----~~~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2           3 LETLKRIIE----KSEGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             HHHHHHHHH----TCSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHh----cCCCceEEEECCCCCCHHHHHHHHHH
Confidence            456666664    33456999999999999999988764

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.19  E-value=0.0014  Score=47.48  Aligned_cols=20  Identities=40%  Similarity=0.722  Sum_probs=17.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 029437           23 ILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~~   42 (193)
                      ++++||||+|||.|.+.+..
T Consensus       126 ~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            55689999999999999875

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.18  E-value=0.0014  Score=45.36  Aligned_cols=26  Identities=31%  Similarity=0.293  Sum_probs=21.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ....--++|.|+||+|||+|..++..
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~~   58 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLAV   58 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHHH
Confidence            34455689999999999999998864

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.00023  Score=47.70  Aligned_cols=19  Identities=26%  Similarity=0.340  Sum_probs=16.5

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 029437           23 ILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~   41 (193)
                      .+|+|+.||||||++.++.
T Consensus        27 tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3567999999999999984

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.11  E-value=0.004  Score=44.05  Aligned_cols=23  Identities=13%  Similarity=0.205  Sum_probs=19.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..-|+|.|++|.|||||+..+.+
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            34688999999999999998764

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.05  E-value=0.0011  Score=47.38  Aligned_cols=18  Identities=17%  Similarity=0.536  Sum_probs=16.2

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q 029437           23 ILFLGLDNAGKTTLLHML   40 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l   40 (193)
                      -+++|+.||||||++.++
T Consensus        27 nvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEEECCTTTCSTHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHH
Confidence            367899999999999987

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.03  E-value=0.0019  Score=42.18  Aligned_cols=25  Identities=20%  Similarity=0.193  Sum_probs=20.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ..-+++.|++|+||||+.-.+....
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcC
Confidence            3468999999999999998876554

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0011  Score=45.52  Aligned_cols=22  Identities=41%  Similarity=0.519  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..|+|-|+.||||||+++.|..
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998865

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.00  E-value=0.016  Score=40.86  Aligned_cols=86  Identities=10%  Similarity=0.088  Sum_probs=43.4

Q ss_pred             EEEEEEEcCChhhhHhh-HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCcEE-EEEeCCCCCCCC-CHH
Q 029437           64 IKFKAFDLGGHQIARRV-WKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFL-VLGNKIDIPYAA-SEE  140 (193)
Q Consensus        64 ~~~~~~D~~G~~~~~~~-~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pvi-iv~nK~D~~~~~-~~~  140 (193)
                      +.+.++|+|+....... .......++.++++... +..++.........+.......+.++. ++.|+.+..... ..+
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~-~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~~~~~~~  197 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDREDELII  197 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTHHHHHH
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccch-hHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchhhHHHHH
Confidence            56788888765422111 11122356767666554 554555555554444222222355543 788988754321 123


Q ss_pred             HHHHhhCCCc
Q 029437          141 ELRYHLGLSN  150 (193)
Q Consensus       141 ~~~~~~~~~~  150 (193)
                      ++.+.++...
T Consensus       198 ~~~~~~g~~v  207 (289)
T d2afhe1         198 ALANKLGTQM  207 (289)
T ss_dssp             HHHHHHTSCE
T ss_pred             HHHHHcCCeE
Confidence            4555555444

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.00  E-value=0.0016  Score=48.01  Aligned_cols=23  Identities=30%  Similarity=0.560  Sum_probs=20.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHh
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~   41 (193)
                      ..-+|+++||+|||||-|.++|.
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA   89 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLA   89 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHH
Confidence            34579999999999999999885

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0026  Score=43.10  Aligned_cols=21  Identities=38%  Similarity=0.525  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      =|+|-|+.||||||+++.|..
T Consensus         5 lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           5 LIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478889999999998887643

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.95  E-value=0.0021  Score=44.22  Aligned_cols=26  Identities=31%  Similarity=0.410  Sum_probs=21.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .+.--++|.|+||+|||+|+.++...
T Consensus        24 ~~gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          24 FKDSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            44556899999999999999888544

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.88  E-value=0.0048  Score=44.52  Aligned_cols=21  Identities=43%  Similarity=0.623  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .++++||+|+|||.+++.+..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            688999999999999998754

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0028  Score=43.68  Aligned_cols=25  Identities=32%  Similarity=0.195  Sum_probs=21.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .+.--+.|.|+||+|||+|..++..
T Consensus        35 p~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          35 ESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4455689999999999999998864

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.70  E-value=0.003  Score=43.33  Aligned_cols=25  Identities=24%  Similarity=0.335  Sum_probs=20.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      ..--++|.|+||+|||+|+.++...
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            3446889999999999999998643

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.66  E-value=0.0031  Score=43.39  Aligned_cols=21  Identities=24%  Similarity=0.442  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      .|+|+|..||||||..+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999854

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.61  E-value=0.0029  Score=47.08  Aligned_cols=19  Identities=16%  Similarity=0.511  Sum_probs=16.6

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 029437           23 ILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~   41 (193)
                      -+|+|+.|||||+++.++.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3578999999999999973

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0039  Score=42.85  Aligned_cols=21  Identities=24%  Similarity=0.427  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      -|+|=|..||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            588999999999999999864

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.38  E-value=0.0045  Score=42.04  Aligned_cols=24  Identities=21%  Similarity=0.171  Sum_probs=19.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHh
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~   41 (193)
                      ...--+.|.|+||+|||+|+.++.
T Consensus        24 ~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          24 PIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHH
Confidence            445568899999999999987764

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.34  E-value=0.0047  Score=41.89  Aligned_cols=20  Identities=50%  Similarity=0.627  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029437           22 KILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~   41 (193)
                      =|+|-|..||||||+++.|.
T Consensus         5 ~I~iEG~DGsGKST~~~~L~   24 (214)
T d1tmka_           5 LILIEGLDRTGKTTQCNILY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            38899999999999998875

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.29  E-value=0.0036  Score=45.44  Aligned_cols=27  Identities=22%  Similarity=0.122  Sum_probs=23.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      .|.-++|.|=|+-||||||+++.+...
T Consensus         2 ~m~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           2 KMGVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             CEEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             CccceEEEEECCCCCCHHHHHHHHHHH
Confidence            355689999999999999999998753

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.21  E-value=0.0055  Score=43.00  Aligned_cols=20  Identities=20%  Similarity=0.257  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029437           22 KILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~   41 (193)
                      -++|.|+||+|||+|+..+.
T Consensus        37 l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          37 VIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            47899999999999987764

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=95.16  E-value=0.0041  Score=44.12  Aligned_cols=16  Identities=31%  Similarity=0.426  Sum_probs=13.8

Q ss_pred             EEEEEcCCCCCHHHHH
Q 029437           22 KILFLGLDNAGKTTLL   37 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~   37 (193)
                      .++|.|+||+||||.+
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            4789999999999764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=95.00  E-value=0.0052  Score=43.96  Aligned_cols=16  Identities=31%  Similarity=0.526  Sum_probs=14.0

Q ss_pred             EEEEEcCCCCCHHHHH
Q 029437           22 KILFLGLDNAGKTTLL   37 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~   37 (193)
                      .++|.|+|||||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4889999999999765

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.79  E-value=0.05  Score=38.03  Aligned_cols=80  Identities=14%  Similarity=-0.013  Sum_probs=44.1

Q ss_pred             CCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEE
Q 029437           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV   95 (193)
Q Consensus        16 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~   95 (193)
                      .-...--+.+.|++|+|||+|+-.+.....               -.+.....+|+-+-..........+ +.|-+ +++
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q---------------~~g~~~vyIDtE~~~~~e~a~~~Gv-D~d~i-l~~  118 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQ---------------AAGGVAAFIDAEHALDPDYAKKLGV-DTDSL-LVS  118 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHH---------------HTTCEEEEEESSCCCCHHHHHHHTC-CGGGC-EEE
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHh---------------cCCCEEEEEECCccCCHHHHHHhCC-CHHHe-EEe
Confidence            344555688999999999999877663211               1123567788887433222222222 23333 344


Q ss_pred             ECCChhhHHHHHHHHHHHHc
Q 029437           96 DAYDKERFAESKKELDALLS  115 (193)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~  115 (193)
                      ....   .++..+....+..
T Consensus       119 ~~~~---~E~~~~~~~~l~~  135 (269)
T d1mo6a1         119 QPDT---GEQALEIADMLIR  135 (269)
T ss_dssp             CCSS---HHHHHHHHHHHHH
T ss_pred             cCCC---HHHHHHHHHHHHh
Confidence            4433   4445555555554

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.77  E-value=0.0086  Score=41.84  Aligned_cols=20  Identities=25%  Similarity=0.195  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029437           22 KILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~   41 (193)
                      -.+|.|++|+|||+|+-.+.
T Consensus        31 ~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            46799999999999998764

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.75  E-value=0.0077  Score=45.06  Aligned_cols=21  Identities=33%  Similarity=0.506  Sum_probs=18.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHh
Q 029437           21 AKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~   41 (193)
                      -+++|+|.+|+|||+++..+.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHH
Confidence            469999999999999987664

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.67  E-value=0.014  Score=40.36  Aligned_cols=25  Identities=20%  Similarity=0.400  Sum_probs=21.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ..+..|+|.|++|+||+.+.+.+..
T Consensus        21 ~~~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          21 CAECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             TCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCcCHHHHHHHHHH
Confidence            4456799999999999999998864

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.64  E-value=0.0091  Score=43.30  Aligned_cols=26  Identities=19%  Similarity=0.247  Sum_probs=22.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~   43 (193)
                      -.-++|.|=|+-|+||||+++.+...
T Consensus         4 ~~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           4 VTIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             CceEEEEEECCccCCHHHHHHHHHHH
Confidence            34579999999999999999998753

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.46  E-value=0.01  Score=42.97  Aligned_cols=23  Identities=26%  Similarity=0.312  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      -++|.|=|+-||||||+++.+..
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC
T ss_pred             ceEEEEECCcCCCHHHHHHHHHH
Confidence            35799999999999999999864

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=94.39  E-value=0.058  Score=37.68  Aligned_cols=79  Identities=11%  Similarity=0.029  Sum_probs=44.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCEEEEEEEcCChhhhHhhHHhhcccCCEEEEEEEC
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDA   97 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~vl~v~d~   97 (193)
                      ...--+-+.|++++|||+|+.++.....               -.+..+..+|+-+-..........+ +.|-++ ++..
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~~aq---------------k~g~~v~yiDtE~~~~~~~a~~~Gv-d~d~i~-~~~~  117 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVAQAQ---------------KAGGTCAFIDAEHALDPVYARALGV-NTDELL-VSQP  117 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHH---------------HTTCCEEEEESSCCCCHHHHHHTTC-CGGGCE-EECC
T ss_pred             cCceEEEEecCCccchHHHHHHHHHHHH---------------hCCCEEEEEECCccCCHHHHHHhCC-CchhEE-EEcC
Confidence            4445688999999999999988765321               0123456888876433222222222 234333 3444


Q ss_pred             CChhhHHHHHHHHHHHHcC
Q 029437           98 YDKERFAESKKELDALLSD  116 (193)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~  116 (193)
                      .+   .++..+.+..+...
T Consensus       118 ~~---~E~~~~~~~~l~~~  133 (268)
T d1xp8a1         118 DN---GEQALEIMELLVRS  133 (268)
T ss_dssp             SS---HHHHHHHHHHHHTT
T ss_pred             CC---HHHHHHHHHHHHhc
Confidence            33   44455566666543

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.23  E-value=0.013  Score=42.88  Aligned_cols=18  Identities=28%  Similarity=0.231  Sum_probs=15.5

Q ss_pred             EEEEEcCCCCCHHHHHHH
Q 029437           22 KILFLGLDNAGKTTLLHM   39 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~   39 (193)
                      -.+|.|+||+|||+++..
T Consensus       165 ~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             EEEEECCTTSTHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHH
Confidence            588899999999998754

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.22  E-value=0.014  Score=41.26  Aligned_cols=22  Identities=32%  Similarity=0.418  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      =|++|.|++|+|||+|+..+..
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHH
Confidence            3899999999999999988765

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.17  E-value=0.028  Score=38.55  Aligned_cols=20  Identities=20%  Similarity=0.388  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029437           22 KILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~   41 (193)
                      -++|+||..+||||+++++.
T Consensus        43 ~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          43 MLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEeccCchhhHHHHHHHH
Confidence            37899999999999999974

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=93.13  E-value=0.028  Score=39.21  Aligned_cols=25  Identities=24%  Similarity=0.258  Sum_probs=20.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029437           18 QKEAKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      ...--+.+.|++|+|||+|+-++..
T Consensus        52 ~~g~itei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          52 PMGRIVEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHH
Confidence            3445688999999999999987754

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.90  E-value=0.031  Score=38.00  Aligned_cols=21  Identities=33%  Similarity=0.400  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      -++|+||..+||||+++++.-
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhHH
Confidence            378999999999999998743

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.40  E-value=0.063  Score=37.29  Aligned_cols=19  Identities=32%  Similarity=0.567  Sum_probs=15.2

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 029437           22 KILFLGLDNAGKTTLLHML   40 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l   40 (193)
                      -|++.|..|+||||+.-.|
T Consensus        22 iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          22 LIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4667799999999986554

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.17  E-value=0.051  Score=38.08  Aligned_cols=21  Identities=38%  Similarity=0.463  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      |+++.|++|+|||+|+..+..
T Consensus        70 r~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHH
Confidence            799999999999999888754

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.85  E-value=0.048  Score=38.17  Aligned_cols=19  Identities=26%  Similarity=0.434  Sum_probs=15.9

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 029437           22 KILFLGLDNAGKTTLLHML   40 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l   40 (193)
                      -|++.|..|+||||+.-.+
T Consensus        10 ~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1          10 YLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCcChHHHHHHHH
Confidence            4778999999999977655

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=91.83  E-value=0.054  Score=35.98  Aligned_cols=20  Identities=30%  Similarity=0.408  Sum_probs=17.2

Q ss_pred             cEEEEEcCC-CCCHHHHHHHH
Q 029437           21 AKILFLGLD-NAGKTTLLHML   40 (193)
Q Consensus        21 ~~i~v~G~~-~~GKssl~~~l   40 (193)
                      .|+.|.|.. |+||||+.-.|
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~L   22 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCAL   22 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHH
Confidence            479999996 99999998665

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=91.32  E-value=0.061  Score=33.59  Aligned_cols=18  Identities=39%  Similarity=0.473  Sum_probs=14.2

Q ss_pred             EEEcCCCCCHHH-HHHHHh
Q 029437           24 LFLGLDNAGKTT-LLHMLK   41 (193)
Q Consensus        24 ~v~G~~~~GKss-l~~~l~   41 (193)
                      +++||-.||||| |++++.
T Consensus         6 ~i~GpMfsGKTteLi~~~~   24 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLH   24 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHH
Confidence            568999999999 555553

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.30  E-value=0.076  Score=34.70  Aligned_cols=21  Identities=29%  Similarity=0.358  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029437           23 ILFLGLDNAGKTTLLHMLKDE   43 (193)
Q Consensus        23 i~v~G~~~~GKssl~~~l~~~   43 (193)
                      |+|+|...||||.+..++...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998643

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=89.29  E-value=0.093  Score=32.17  Aligned_cols=20  Identities=15%  Similarity=0.066  Sum_probs=15.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029437           22 KILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~   41 (193)
                      ..+|.++.|+|||+++-.+.
T Consensus        10 ~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            45779999999999886543

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.92  E-value=0.098  Score=36.80  Aligned_cols=22  Identities=23%  Similarity=0.217  Sum_probs=18.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029437           21 AKILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l~~   42 (193)
                      =|+++.|++|+|||+|+..+..
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHHH
Confidence            3789999999999999876653

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=88.28  E-value=0.088  Score=32.00  Aligned_cols=20  Identities=25%  Similarity=0.159  Sum_probs=15.4

Q ss_pred             CCccEEEEEcCCCCCHHHHH
Q 029437           18 QKEAKILFLGLDNAGKTTLL   37 (193)
Q Consensus        18 ~~~~~i~v~G~~~~GKssl~   37 (193)
                      ++.-+.++.+++|+|||..+
T Consensus         5 ~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTH
T ss_pred             HcCCcEEEEcCCCCChhHHH
Confidence            34567888999999999443

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=86.59  E-value=0.13  Score=35.97  Aligned_cols=21  Identities=24%  Similarity=0.227  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029437           22 KILFLGLDNAGKTTLLHMLKD   42 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~~l~~   42 (193)
                      |++|.|++|+|||+|+..+..
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHH
T ss_pred             eEeeccCCCCChHHHHHHHHh
Confidence            689999999999999876543

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=86.50  E-value=1.7  Score=24.66  Aligned_cols=28  Identities=25%  Similarity=0.520  Sum_probs=23.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           17 WQKEAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        17 ~~~~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      .++..+|.++|-.|+|-|+|...+...-
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G   32 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEG   32 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHT
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCC
Confidence            4456789999999999999988886543

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.50  E-value=0.65  Score=30.01  Aligned_cols=17  Identities=24%  Similarity=0.204  Sum_probs=13.7

Q ss_pred             EEEEEcCCCCCHHHHHH
Q 029437           22 KILFLGLDNAGKTTLLH   38 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~   38 (193)
                      ++++++|.|+|||...-
T Consensus        25 n~lv~~pTGsGKT~i~~   41 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIAM   41 (200)
T ss_dssp             CEEEECCTTSCHHHHHH
T ss_pred             CeEEEeCCCCcHHHHHH
Confidence            47889999999997443

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=84.47  E-value=0.42  Score=37.79  Aligned_cols=20  Identities=25%  Similarity=0.331  Sum_probs=17.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHH
Q 029437           21 AKILFLGLDNAGKTTLLHML   40 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l   40 (193)
                      =.|++.|.+|||||.-.+.+
T Consensus        87 QsIiisGeSGsGKTe~~k~i  106 (684)
T d1lkxa_          87 QCVIISGESGAGKTEASKKI  106 (684)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHH
Confidence            36999999999999988766

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=84.07  E-value=0.22  Score=35.38  Aligned_cols=17  Identities=47%  Similarity=0.722  Sum_probs=14.1

Q ss_pred             EEEEEcCCCCCHHHHHH
Q 029437           22 KILFLGLDNAGKTTLLH   38 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~~   38 (193)
                      .-++.|-+|+|||||-.
T Consensus        16 valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          16 VAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             EEEEEECTTSCHHHHTC
T ss_pred             EEEEEccCCCCcccccc
Confidence            45788999999999763

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=83.92  E-value=2  Score=24.06  Aligned_cols=25  Identities=20%  Similarity=0.293  Sum_probs=21.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029437           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~~~~   44 (193)
                      ++||-++|-.|+|-|.|...+....
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~G   25 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSNG   25 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhCC
Confidence            3689999999999999988887654

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=83.67  E-value=0.24  Score=35.11  Aligned_cols=16  Identities=50%  Similarity=0.773  Sum_probs=13.6

Q ss_pred             EEEEEcCCCCCHHHHH
Q 029437           22 KILFLGLDNAGKTTLL   37 (193)
Q Consensus        22 ~i~v~G~~~~GKssl~   37 (193)
                      .-++-|-+|+|||||-
T Consensus        16 ~alfFGLSGTGKTTLs   31 (313)
T d2olra1          16 VAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEEccCCCCcccce
Confidence            3468899999999976

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.94  E-value=0.46  Score=29.11  Aligned_cols=17  Identities=35%  Similarity=0.313  Sum_probs=14.1

Q ss_pred             EEEcCCCCCHHHHHHHH
Q 029437           24 LFLGLDNAGKTTLLHML   40 (193)
Q Consensus        24 ~v~G~~~~GKssl~~~l   40 (193)
                      +++||-.|||||-+-+.
T Consensus         6 li~GpMfsGKTt~Li~~   22 (133)
T d1xbta1           6 VILGPMFSGKSTELMRR   22 (133)
T ss_dssp             EEECCTTSCHHHHHHHH
T ss_pred             EEEecccCHHHHHHHHH
Confidence            57899999999977554

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=81.89  E-value=0.61  Score=37.00  Aligned_cols=23  Identities=26%  Similarity=0.330  Sum_probs=18.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHh
Q 029437           19 KEAKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        19 ~~~~i~v~G~~~~GKssl~~~l~   41 (193)
                      .+=.|++.|.+|||||.-.+.++
T Consensus       124 ~nQsIiisGeSGaGKTe~~k~il  146 (712)
T d1d0xa2         124 QNQSLLITGESGAGKTENTKKVI  146 (712)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCceEEEeCCCCCCHHHHHHHHH
Confidence            33479999999999999887763

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=81.12  E-value=0.67  Score=37.28  Aligned_cols=20  Identities=35%  Similarity=0.391  Sum_probs=16.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHH
Q 029437           21 AKILFLGLDNAGKTTLLHML   40 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l   40 (193)
                      =.|++.|.+|||||.-.+.+
T Consensus       124 QsIiisGeSGaGKTe~~K~i  143 (794)
T d2mysa2         124 QSILITGESGAGKTVNTKRV  143 (794)
T ss_dssp             EEEEEEECTTSCHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHH
Confidence            36999999999999776654

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=81.03  E-value=0.68  Score=36.72  Aligned_cols=20  Identities=35%  Similarity=0.365  Sum_probs=17.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHH
Q 029437           21 AKILFLGLDNAGKTTLLHML   40 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~~~l   40 (193)
                      =.|++.|.+|||||.-.+.+
T Consensus        92 Q~IiisGeSGaGKTe~~k~i  111 (710)
T d1br2a2          92 QSILCTGESGAGKTENTKKV  111 (710)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHH
Confidence            36999999999999988776

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=81.00  E-value=0.4  Score=34.10  Aligned_cols=17  Identities=47%  Similarity=0.726  Sum_probs=14.4

Q ss_pred             cEEEEEcCCCCCHHHHH
Q 029437           21 AKILFLGLDNAGKTTLL   37 (193)
Q Consensus        21 ~~i~v~G~~~~GKssl~   37 (193)
                      -.-++-|-+|+|||||-
T Consensus        15 d~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          15 DVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             CEEEEECCTTSSHHHHH
T ss_pred             CEEEEEccCCCCcccce
Confidence            34568899999999998

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=80.88  E-value=0.69  Score=36.81  Aligned_cols=22  Identities=27%  Similarity=0.297  Sum_probs=18.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHh
Q 029437           20 EAKILFLGLDNAGKTTLLHMLK   41 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~~~l~   41 (193)
                      +=.|++.|.+|||||.-.+.++
T Consensus        94 ~Q~IiisGeSGsGKTe~~k~il  115 (730)
T d1w7ja2          94 NQSIIVSGESGAGKTVSAKYAM  115 (730)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHH
Confidence            3479999999999999877663

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.42  E-value=0.17  Score=33.26  Aligned_cols=18  Identities=33%  Similarity=0.322  Sum_probs=14.9

Q ss_pred             ccEEEEEcCCCCCHHHHH
Q 029437           20 EAKILFLGLDNAGKTTLL   37 (193)
Q Consensus        20 ~~~i~v~G~~~~GKssl~   37 (193)
                      .-++++.+|.|+|||...
T Consensus        40 ~~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          40 GKNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             CSCEEEECSSHHHHHHHH
T ss_pred             CCCEEEEcCCCCchhHHH
Confidence            346899999999999764