Citrus Sinensis ID: 029441

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEAAESWEESIDDIIAAFEKRHRRKLLYSISFY
cccEEEEEEcccccccHHHHHHHHHccccEEEEcccccEEccccccccccEEcccccHHHHHHHHHHHcHHHHHHccccccccccccccccccccccccccccccEEEEccHHHHHHHHHHHHccccccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccEEEccc
cccEEEEEEccccccHHHHHHHHHHccccEEEEccccEEEccccccccccEccccccHHHHHHHHHHccHHHHHHccHHHHHHHHcccccccHHHHcccccccEEEEEEcHHHHHHHHHHHHHHccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccEEEEEEEc
MKYRYAMvcssnqnrSMEAHYLLKRhgfdvssygtgahvklpgpslrepnvyefgtpykqMFDDLrrkdpelykrngilpmlkrnigvkaapqrwqdnaldgsfDIVFTFEEKVFDTVVEDLntreqpfmKTVLVINLevkdnheeaaiggrlTFDLCQEIEAAESWEESIDDIIAAFEKRHRRKLLYSISFY
mkyryamvcssnqnRSMEAHYLLKRHGFDVSSYGTGahvklpgpslrepNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDlntreqpfmKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEAAESWEESIDDIIAAFEKRHRRKLLYSISFY
MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQeieaaesweesiddIIAAFEKRHRRKLLYSISFY
******************AHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEAAESWEESIDDIIAAFEKRHRRKLLYSI***
*KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEAAESWEESIDDIIAAFEKRHRRKLLYSISFY
MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEAAESWEESIDDIIAAFEKRHRRKLLYSISFY
MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEAAESWEESIDDIIAAFEKRHRRKLLYSISFY
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEAAESWEESIDDIIAAFEKRHRRKLLYSISFY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query193 2.2.26 [Sep-21-2011]
Q6PC19194 RNA polymerase II subunit yes no 0.974 0.969 0.526 1e-55
Q5ZJQ7194 RNA polymerase II subunit yes no 0.974 0.969 0.531 2e-55
Q17QI2194 RNA polymerase II subunit yes no 0.974 0.969 0.542 3e-55
Q9CY97194 RNA polymerase II subunit yes no 0.974 0.969 0.536 3e-55
Q9NP77194 RNA polymerase II subunit yes no 0.974 0.969 0.526 4e-55
Q4KLK9194 RNA polymerase II subunit yes no 0.974 0.969 0.526 5e-55
Q6NRQ7194 RNA polymerase II subunit N/A no 0.974 0.969 0.526 6e-54
Q558Z3214 RNA polymerase II subunit yes no 0.979 0.883 0.476 4e-52
O42868197 RNA polymerase II subunit yes no 0.963 0.944 0.457 2e-46
A6NK39194 Putative RNA polymerase I no no 0.974 0.969 0.463 5e-45
>sp|Q6PC19|SSU72_DANRE RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Danio rerio GN=ssu72 PE=2 SV=1 Back     alignment and function desciption
 Score =  215 bits (547), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 100/190 (52%), Positives = 139/190 (73%), Gaps = 2/190 (1%)

Query: 4   RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
           R A+VCSSNQNRSMEAH +L + GFDV S+GTG HVKLPGP+  +PN+Y+F T Y+QM++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFDVRSFGTGTHVKLPGPAPDKPNIYDFKTTYEQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
           DL RKD ELY +NGIL ML RN  +K+ P+R+Q  +    FD+V T EE+V+D V+EDLN
Sbjct: 67  DLVRKDKELYTQNGILHMLDRNKRIKSRPERFQ--SCRDQFDLVITCEERVYDQVLEDLN 124

Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEAAESWEESIDDIIAAFEKRHR 183
           +REQ   + V VIN++++DNHEEA +G  L  +LCQ I+  +  E  +D+++  FE++  
Sbjct: 125 SREQESFQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTDDMENEMDELLQEFEEKSH 184

Query: 184 RKLLYSISFY 193
           R  L+S+ FY
Sbjct: 185 RPFLHSVCFY 194
May be involved in the C-terminal domain of RNA polymerase II dephosphorylation, RNA processing and termination.
Danio rerio (taxid: 7955)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6
>sp|Q5ZJQ7|SSU72_CHICK RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gallus gallus GN=SSU72 PE=2 SV=1 Back     alignment and function description
>sp|Q17QI2|SSU72_BOVIN RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Bos taurus GN=SSU72 PE=2 SV=1 Back     alignment and function description
>sp|Q9CY97|SSU72_MOUSE RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus GN=Ssu72 PE=2 SV=1 Back     alignment and function description
>sp|Q9NP77|SSU72_HUMAN RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens GN=SSU72 PE=1 SV=1 Back     alignment and function description
>sp|Q4KLK9|SSU72_RAT RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Rattus norvegicus GN=Ssu72 PE=2 SV=1 Back     alignment and function description
>sp|Q6NRQ7|SSU72_XENLA RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Xenopus laevis GN=ssu72 PE=2 SV=1 Back     alignment and function description
>sp|Q558Z3|SSU72_DICDI RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Dictyostelium discoideum GN=ssu72 PE=3 SV=1 Back     alignment and function description
>sp|O42868|SSU72_SCHPO RNA polymerase II subunit A C-terminal domain phosphatase ssu72 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssu72 PE=1 SV=1 Back     alignment and function description
>sp|A6NK39|S72L1_HUMAN Putative RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like protein 1 OS=Homo sapiens PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query193
224135609193 predicted protein [Populus trichocarpa] 1.0 1.0 0.844 1e-95
449439211193 PREDICTED: RNA polymerase II subunit A C 1.0 1.0 0.849 2e-95
225435973193 PREDICTED: RNA polymerase II subunit A C 1.0 1.0 0.844 3e-95
255549148193 Protein SSU72, putative [Ricinus communi 1.0 1.0 0.834 9e-94
297842133193 hypothetical protein ARALYDRAFT_895246 [ 1.0 1.0 0.808 7e-93
351724119193 uncharacterized protein LOC100306388 [Gl 1.0 1.0 0.823 8e-93
15219558193 Ssu72-like protein [Arabidopsis thaliana 1.0 1.0 0.803 3e-92
224286621193 unknown [Picea sitchensis] 1.0 1.0 0.746 7e-87
168045018193 predicted protein [Physcomitrella patens 1.0 1.0 0.709 2e-83
168018157193 predicted protein [Physcomitrella patens 1.0 1.0 0.694 2e-81
>gi|224135609|ref|XP_002322116.1| predicted protein [Populus trichocarpa] gi|222869112|gb|EEF06243.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  354 bits (908), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 163/193 (84%), Positives = 179/193 (92%)

Query: 1   MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQ 60
           MK+RYAMVCSSNQNRSMEAH LLKRHGFDVSSYGTGAHVKLPGPSLREPNVY+FGTPYKQ
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHSLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYDFGTPYKQ 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVE 120
           MFDDLRRKDPELYKRNGILPMLKRN GVK APQRWQDNA DGSF +VFTFEEKVFD V+E
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNSGVKLAPQRWQDNAADGSFSVVFTFEEKVFDMVLE 120

Query: 121 DLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEAAESWEESIDDIIAAFEK 180
           DL+ R+   +K+VLVINLEVKDNHEEAA+GG+LT +LCQ+IEA ESWE+SID+II AFE 
Sbjct: 121 DLHNRDHVLLKSVLVINLEVKDNHEEAAVGGQLTLELCQKIEAVESWEDSIDEIITAFEA 180

Query: 181 RHRRKLLYSISFY 193
           +HRRKL+YSISFY
Sbjct: 181 KHRRKLVYSISFY 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449439211|ref|XP_004137380.1| PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like [Cucumis sativus] gi|449506693|ref|XP_004162820.1| PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225435973|ref|XP_002271255.1| PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Vitis vinifera] gi|296083946|emb|CBI24334.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255549148|ref|XP_002515629.1| Protein SSU72, putative [Ricinus communis] gi|223545267|gb|EEF46774.1| Protein SSU72, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297842133|ref|XP_002888948.1| hypothetical protein ARALYDRAFT_895246 [Arabidopsis lyrata subsp. lyrata] gi|297334789|gb|EFH65207.1| hypothetical protein ARALYDRAFT_895246 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|351724119|ref|NP_001238070.1| uncharacterized protein LOC100306388 [Glycine max] gi|255628381|gb|ACU14535.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|15219558|ref|NP_177523.1| Ssu72-like protein [Arabidopsis thaliana] gi|12324205|gb|AAG52071.1|AC012679_9 unknown protein; 85102-83684 [Arabidopsis thaliana] gi|26453040|dbj|BAC43596.1| unknown protein [Arabidopsis thaliana] gi|28973307|gb|AAO63978.1| unknown protein [Arabidopsis thaliana] gi|332197391|gb|AEE35512.1| Ssu72-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224286621|gb|ACN41015.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|168045018|ref|XP_001774976.1| predicted protein [Physcomitrella patens subsp. patens] gi|162673723|gb|EDQ60242.1| predicted protein [Physcomitrella patens subsp. patens] Back     alignment and taxonomy information
>gi|168018157|ref|XP_001761613.1| predicted protein [Physcomitrella patens subsp. patens] gi|162687297|gb|EDQ73681.1| predicted protein [Physcomitrella patens subsp. patens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query193
TAIR|locus:2027789193 AT1G73820 [Arabidopsis thalian 1.0 1.0 0.756 1.3e-77
ZFIN|ZDB-GENE-040426-1689194 ssu72 "SSU72 RNA polymerase II 0.974 0.969 0.515 3.7e-48
UNIPROTKB|Q5ZJQ7194 SSU72 "RNA polymerase II subun 0.974 0.969 0.515 3.3e-47
UNIPROTKB|Q17QI2194 SSU72 "RNA polymerase II subun 0.974 0.969 0.515 3.3e-47
UNIPROTKB|E2QZ84194 SSU72 "Uncharacterized protein 0.974 0.969 0.515 3.3e-47
MGI|MGI:1916241194 Ssu72 "Ssu72 RNA polymerase II 0.974 0.969 0.510 3.3e-47
UNIPROTKB|Q9NP77194 SSU72 "RNA polymerase II subun 0.974 0.969 0.510 4.2e-47
RGD|1307854194 Ssu72 "SSU72 RNA polymerase II 0.974 0.969 0.510 4.2e-47
UNIPROTKB|F1RJC9195 SSU72 "Uncharacterized protein 0.974 0.964 0.513 3e-46
UNIPROTKB|J9NXK3194 J9NXK3 "Uncharacterized protei 0.974 0.969 0.494 2.4e-44
TAIR|locus:2027789 AT1G73820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
 Identities = 146/193 (75%), Positives = 163/193 (84%)

Query:     1 MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQ 60
             M++RYAMVCSSNQNRSMEAH LLKR G DV+SYGTG+HVKLPGPSLREPNVY+FGTPYKQ
Sbjct:     1 MRFRYAMVCSSNQNRSMEAHALLKRQGLDVASYGTGSHVKLPGPSLREPNVYDFGTPYKQ 60

Query:    61 MFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVE 120
             MFD+LRRKDPELYKRNGIL M+KRN+ VK APQRWQDNA DG FD+V TFEEKVFD+V+E
Sbjct:    61 MFDELRRKDPELYKRNGILQMIKRNLSVKLAPQRWQDNAGDGVFDVVMTFEEKVFDSVLE 120

Query:   121 DLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEK 180
             DLN REQ   KT+LV+NLEVKDNHEEAAIGGRL  +LCQ              I+A FEK
Sbjct:   121 DLNNREQSLTKTILVMNLEVKDNHEEAAIGGRLALELCQEIEGNETWEDTIDDIVAGFEK 180

Query:   181 RHRRKLLYSISFY 193
             +HRRKL+YSISFY
Sbjct:   181 QHRRKLVYSISFY 193
GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM
GO:0006397 "mRNA processing" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0006470 "protein dephosphorylation" evidence=RCA
ZFIN|ZDB-GENE-040426-1689 ssu72 "SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJQ7 SSU72 "RNA polymerase II subunit A C-terminal domain phosphatase SSU72" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q17QI2 SSU72 "RNA polymerase II subunit A C-terminal domain phosphatase SSU72" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QZ84 SSU72 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1916241 Ssu72 "Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NP77 SSU72 "RNA polymerase II subunit A C-terminal domain phosphatase SSU72" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1307854 Ssu72 "SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1RJC9 SSU72 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|J9NXK3 J9NXK3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6CQ61SSU72_KLULA3, ., 1, ., 3, ., 1, 60.41200.97400.9082yesno
P0CR76SSU72_CRYNJ3, ., 1, ., 3, ., 1, 60.45340.87560.9037yesno
Q6BYP7SSU72_DEBHA3, ., 1, ., 3, ., 1, 60.36860.98440.8520yesno
Q17QI2SSU72_BOVIN3, ., 1, ., 3, ., 1, 60.54210.97400.9690yesno
Q6FMU7SSU72_CANGA3, ., 1, ., 3, ., 1, 60.44220.97400.9215yesno
Q558Z3SSU72_DICDI3, ., 1, ., 3, ., 1, 60.47660.97920.8831yesno
Q5ZJQ7SSU72_CHICK3, ., 1, ., 3, ., 1, 60.53150.97400.9690yesno
Q9CY97SSU72_MOUSE3, ., 1, ., 3, ., 1, 60.53680.97400.9690yesno
O42868SSU72_SCHPO3, ., 1, ., 3, ., 1, 60.45780.96370.9441yesno
Q6NRQ7SSU72_XENLA3, ., 1, ., 3, ., 1, 60.52630.97400.9690N/Ano
Q6C195SSU72_YARLI3, ., 1, ., 3, ., 1, 60.41360.97400.9740yesno
Q4KLK9SSU72_RAT3, ., 1, ., 3, ., 1, 60.52630.97400.9690yesno
P53538SSU72_YEAST3, ., 1, ., 3, ., 1, 60.43710.97400.9126yesno
Q9NP77SSU72_HUMAN3, ., 1, ., 3, ., 1, 60.52630.97400.9690yesno
Q6PC19SSU72_DANRE3, ., 1, ., 3, ., 1, 60.52630.97400.9690yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.3.160.946
3rd Layer3.1.30.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query193
pfam04722193 pfam04722, Ssu72, Ssu72-like protein 1e-103
COG5211197 COG5211, SSU72, RNA polymerase II-interacting prot 4e-66
>gnl|CDD|218229 pfam04722, Ssu72, Ssu72-like protein Back     alignment and domain information 
 Score =  296 bits (759), Expect = e-103
 Identities = 106/194 (54%), Positives = 144/194 (74%), Gaps = 3/194 (1%)

Query: 2   KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQM 61
           K ++A+VC+SNQNRSMEAH +L + GF+V S+GTG+ VKLPGPS+ +PNVY+FGTPY ++
Sbjct: 1   KLKFAVVCASNQNRSMEAHKVLAKAGFNVRSFGTGSAVKLPGPSIDKPNVYDFGTPYDEI 60

Query: 62  FDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVED 121
           ++DL  +D ELY +NG+L ML RN  +K AP+RWQDN     FD+V T EE+VFD VVED
Sbjct: 61  YNDLESQDEELYTQNGLLHMLDRNRRIKEAPERWQDNTELK-FDVVITCEERVFDAVVED 119

Query: 122 LNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEAA-ESWEESIDDIIAAFEK 180
           L  R     + V VIN+++KDNHEEA IG +   DL Q +EAA E  E+ ID+I+A F++
Sbjct: 120 LMNRGSSLNQPVHVINVDIKDNHEEAIIGAKAILDLAQMLEAASEDLEDEIDEILAEFQE 179

Query: 181 RHR-RKLLYSISFY 193
           +H    LLY+++FY
Sbjct: 180 KHPGLPLLYTVAFY 193

The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs. Length = 193
>gnl|CDD|227536 COG5211, SSU72, RNA polymerase II-interacting protein involved in transcription start site selection [Transcription] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 193
PF04722195 Ssu72: Ssu72-like protein; InterPro: IPR006811 The 100.0
KOG2424195 consensus Protein involved in transcription start 100.0
COG5211197 SSU72 RNA polymerase II-interacting protein involv 100.0
COG0394139 Wzb Protein-tyrosine-phosphatase [Signal transduct 97.3
PRK11391144 etp phosphotyrosine-protein phosphatase; Provision 96.67
smart00226140 LMWPc Low molecular weight phosphatase family. 96.21
PRK10126147 tyrosine phosphatase; Provisional 95.91
PF01451138 LMWPc: Low molecular weight phosphotyrosine protei 95.82
TIGR02689126 ars_reduc_gluta arsenate reductase, glutathione/gl 90.98
PRK13530133 arsenate reductase; Provisional 89.92
cd00115141 LMWPc Substituted updates: Aug 22, 2001 88.9
cd01523100 RHOD_Lact_B Member of the Rhodanese Homology Domai 86.59
PLN02160136 thiosulfate sulfurtransferase 83.05
TIGR03746202 conj_TIGR03746 integrating conjugative element pro 81.87
TIGR02691129 arsC_pI258_fam arsenate reductase (thioredoxin). T 80.99
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle Back     alignment and domain information 
Probab=100.00  E-value=1.8e-113  Score=723.18  Aligned_cols=192  Identities=58%  Similarity=1.006  Sum_probs=168.2

Q ss_pred             CceEEEEccCCCCcchHHHHhHHhCCCCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHHHhcCchhh
Q 029441            2 KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPM   81 (193)
Q Consensus         2 ~l~~avVCasN~NRSMEaH~~L~~~g~~V~SfGTGs~VrLPGps~d~PNvY~FgT~Y~~iy~dL~~kd~~lY~~NGlL~M   81 (193)
                      ++|||||||||||||||||++|+++||+|+||||||+|||||||+|+||||+|||||++||+||.+||++||++||||+|
T Consensus         1 ~l~~avVCasN~NRSMEAH~~L~~~G~~V~SfGTGs~VkLPGps~d~PnvY~FgT~Y~~iy~dL~~kd~~lY~~NGlL~M   80 (195)
T PF04722_consen    1 KLRFAVVCASNQNRSMEAHNVLKKAGFNVRSFGTGSHVKLPGPSIDKPNVYDFGTPYDDIYNDLLRKDKELYTQNGLLHM   80 (195)
T ss_dssp             -SEEEEEESSSSSHHHHHHHHHHHTT-EEEEEE-SSSEEEEESSTTCEEEE-TTS-HHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred             CceEEEEccCCCCcCHHHHHHHHHCCCceEeecCCCcccCCCCCCCCCcccCCCCcHHHHHHHHHHhCHHHHHHcCcHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCCCCcccccccCCCCcccEEEeccchhHHHHHHHHhcCCCCCCceEEEEEecccCCHHHHHhhHHHHHHHHHHH
Q 029441           82 LKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEI  161 (193)
Q Consensus        82 LdRN~~iK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl~~R~~~~~~pVHViNvdIkDn~EeA~~Ga~~il~Lc~~l  161 (193)
                      |+|||+||++|||||++++.+.|||||||||||||+|||||++|++++++||||||||||||||||++||++||+||++|
T Consensus        81 L~RN~~iK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl~~R~~~~~~pvHVINvDIkDnhEeA~~Ga~~ileLc~~l  160 (195)
T PF04722_consen   81 LDRNRRIKPAPERFQDCKEKGKFDVIITCEERVFDQVVEDLNSREQETNQPVHVINVDIKDNHEEATIGAFLILELCQML  160 (195)
T ss_dssp             HHHHHCH-SS--BGGG-------SEEEESSHHHHHHHHHHHHCS--SS-EEEEEEEE---SSHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCccccCCccchhcCCCCcceeEEEEechHHHHHHHHHHHhccccCCceEEEEEeeccCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999986669999999999999999999999999999999999999999999999999999999999


Q ss_pred             H--hhhhhHHHHHHHHHHHHHHc-CCCcceeeccC
Q 029441          162 E--AAESWEESIDDIIAAFEKRH-RRKLLYSISFY  193 (193)
Q Consensus       162 ~--~~~d~e~~i~~il~~fe~k~-~~~~Lhtv~fY  193 (193)
                      +  +++|||++|++||++||+|+ ++++|||||||
T Consensus       161 ~~~~~~d~e~~i~~il~~fe~k~p~~~~Lhtv~fY  195 (195)
T PF04722_consen  161 EEEASEDLEDEIDEILQEFEEKHPGRPLLHTVCFY  195 (195)
T ss_dssp             H--TSSSHHHHHHHHHHHHHHHH-T--EEEEEEEE
T ss_pred             HhhccccHHHHHHHHHHHHHHHcCCCCceEEEecC
Confidence            9  99999999999999999999 78999999998

Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
>KOG2424 consensus Protein involved in transcription start site selection [Transcription] Back     alignment and domain information
>COG5211 SSU72 RNA polymerase II-interacting protein involved in transcription start site selection [Transcription] Back     alignment and domain information
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional Back     alignment and domain information
>smart00226 LMWPc Low molecular weight phosphatase family Back     alignment and domain information
>PRK10126 tyrosine phosphatase; Provisional Back     alignment and domain information
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity Back     alignment and domain information
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type Back     alignment and domain information
>PRK13530 arsenate reductase; Provisional Back     alignment and domain information
>cd00115 LMWPc Substituted updates: Aug 22, 2001 Back     alignment and domain information
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>PLN02160 thiosulfate sulfurtransferase Back     alignment and domain information
>TIGR03746 conj_TIGR03746 integrating conjugative element protein, PFL_4703 family Back     alignment and domain information
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query193
3o2s_B214 Crystal Structure Of The Human Symplekin-Ssu72 Comp 9e-52
3o2q_B214 Crystal Structure Of The Human Symplekin-Ssu72-Ctd 2e-50
3omw_A190 Crystal Structure Of Ssu72, An Essential Eukaryotic 8e-42
3fdf_A195 Crystal Structure Of The Serine Phosphatase Of Rna 3e-39
3p9y_A198 Crystal Structure Of The Drosophila Melanogaster Ss 6e-39
>pdb|3O2S|B Chain B, Crystal Structure Of The Human Symplekin-Ssu72 Complex Length = 214 Back     alignment and structure 
Iteration: 1

 Score =  199 bits (505), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 97/190 (51%), Positives = 130/190 (68%), Gaps = 2/190 (1%)
Query: 4   RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
           R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+  +PNVY+F T Y QM++
Sbjct: 27  RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 86
Query: 64  DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D VVEDLN
Sbjct: 87  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLN 144
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHR 183
           +REQ   + V V+N++++DNHEEA +G  L  +LCQ              ++  FE++  
Sbjct: 145 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 204
Query: 184 RKLLYSISFY 193
           R  L+++ FY
Sbjct: 205 RTFLHTVCFY 214
>pdb|3O2Q|B Chain B, Crystal Structure Of The Human Symplekin-Ssu72-Ctd Phosphopeptide Complex Length = 214 Back     alignment and structure
>pdb|3OMW|A Chain A, Crystal Structure Of Ssu72, An Essential Eukaryotic Phosphatase Specific For The C-Terminal Domain Of Rna Polymerase Ii Length = 190 Back     alignment and structure
>pdb|3FDF|A Chain A, Crystal Structure Of The Serine Phosphatase Of Rna Polymerase Ii Ctd (Ssu72 Superfamily) From Drosophila Melanogaster. Orthorhombic Crystal Form. Northeast Structural Genomics Consortium Target Fr253. Length = 195 Back     alignment and structure
>pdb|3P9Y|A Chain A, Crystal Structure Of The Drosophila Melanogaster Ssu72-Pctd Complex Length = 198 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query193
3p9y_A198 CG14216, LD40846P; phosphatase, CIS proline, LMW P 1e-109
3o2q_B214 RNA polymerase II subunit A C-terminal domain PHO 1e-108
>3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 3fdf_A 3fmv_A 3omx_A 3omw_A Length = 198 Back     alignment and structure
 Score =  309 bits (792), Expect = e-109
 Identities = 85/192 (44%), Positives = 122/192 (63%), Gaps = 2/192 (1%)

Query: 2   KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQM 61
           K   A+V SSN NRSMEAH  L + GF+V SYGTG  VKLPG +  +PNVYEFGT Y+ +
Sbjct: 9   KLAVAVVDSSNMNRSMEAHNFLAKKGFNVRSYGTGERVKLPGMAFDKPNVYEFGTKYEDI 68

Query: 62  FDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVED 121
           + DL  KD E Y +NG+L ML RN  +K  P+R+QD      FDI+ T EE+V+D VV  
Sbjct: 69  YRDLESKDKEFYTQNGLLHMLDRNRRIKKCPERFQDT--KEQFDIIVTVEERVYDLVVMH 126

Query: 122 LNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEAAESWEESIDDIIAAFEKR 181
           + + E    + V V+N++V +N E+A +G  +  D+   +  +   +  ID++I  FE+R
Sbjct: 127 MESMESVDNRPVHVLNVDVVNNAEDALMGAFVITDMINMMAKSTDLDNDIDELIQEFEER 186

Query: 182 HRRKLLYSISFY 193
            +R +L+S+ FY
Sbjct: 187 RKRVILHSVLFY 198
>3o2q_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, scaffold, phosphatase, polymerase II CTD, CIS-P hydrolase; HET: SEP; 2.40A {Homo sapiens} PDB: 3o2s_B Length = 214 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query193
3p9y_A198 CG14216, LD40846P; phosphatase, CIS proline, LMW P 100.0
4h3k_B214 RNA polymerase II subunit A C-terminal domain PHO 100.0
3rof_A158 Low molecular weight protein-tyrosine-phosphatase; 96.74
4egs_A180 Ribose 5-phosphate isomerase RPIB; tyrosine phosph 96.26
2wmy_A150 WZB, putative acid phosphatase WZB; hydrolase; 2.2 96.2
2fek_A167 Low molecular weight protein-tyrosine- phosphatase 95.85
2wja_A168 Putative acid phosphatase WZB; hydrolase; 2.50A {E 95.59
1y1l_A124 Arsenate reductase (ARSC); detoxification, cadmium 95.25
4etn_A184 LMPTP, low molecular weight protein-tyrosine-phosp 94.89
1p8a_A146 Protein tyrosine phosphatase; hydrolase; NMR {Trit 94.79
1jf8_A131 Arsenate reductase; ptpase I fold, P-loop, sulfini 94.76
1u2p_A163 Ptpase, low molecular weight protein-tyrosine- pho 94.6
1d1q_A161 Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-be 94.55
1jl3_A139 Arsenate reductase; alpha-beta fold, PTP-loop, oxi 94.34
2gi4_A156 Possible phosphotyrosine protein phosphatase; low 94.34
3rh0_A148 Arsenate reductase; oxidoreductase; 1.72A {Coryneb 94.23
2l17_A134 Synarsc, arsenate reductase; alpha/beta sandwich, 94.09
3n8i_A157 Low molecular weight phosphotyrosine protein PHOS; 93.9
4etm_A173 LMPTP, low molecular weight protein-tyrosine-phosp 93.86
3t38_A213 Arsenate reductase; low molecular weight tyrosine 93.41
2cwd_A161 Low molecular weight phosphotyrosine protein PHOS; 93.29
3jvi_A161 Protein tyrosine phosphatase; niaid, ssgcid, seatt 92.79
3iwh_A103 Rhodanese-like domain protein; alpha-beta-alpha sa 86.85
2jtq_A85 Phage shock protein E; solution structure rhodanes 86.56
3foj_A100 Uncharacterized protein; protein SSP1007, structur 85.78
3gk5_A108 Uncharacterized rhodanese-related protein TVG08686 85.31
3g5j_A134 Putative ATP/GTP binding protein; N-terminal domai 84.61
1vee_A134 Proline-rich protein family; hypothetical protein, 84.46
3nhv_A144 BH2092 protein; alpha-beta protein, structural gen 83.4
3eme_A103 Rhodanese-like domain protein; alpha-beta-alpha sa 83.07
2fsx_A148 RV0390, COG0607: rhodanese-related sulfurtransfera 80.11
>3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 3fdf_A 3fmv_A 3omx_A 3omw_A Back     alignment and structure
Probab=100.00  E-value=4.3e-113  Score=720.26  Aligned_cols=190  Identities=45%  Similarity=0.753  Sum_probs=188.5

Q ss_pred             CceEEEEccCCCCcchHHHHhHHhCCCCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHHHhcCchhh
Q 029441            2 KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPM   81 (193)
Q Consensus         2 ~l~~avVCasN~NRSMEaH~~L~~~g~~V~SfGTGs~VrLPGps~d~PNvY~FgT~Y~~iy~dL~~kd~~lY~~NGlL~M   81 (193)
                      +||||||||||||||||||++|+++||+|+|||||++|||||||+|+||||+|||||++||+||.+||++||++||||+|
T Consensus         9 ~l~~avVCaSN~NRSMEaH~~L~k~G~~V~SfGTGs~VrLPGps~d~PNvY~FgT~Y~~iy~dL~~kd~~lY~~NGiL~M   88 (198)
T 3p9y_A            9 KLAVAVVDSSNMNRSMEAHNFLAKKGFNVRSYGTGERVKLPGMAFDKPNVYEFGTKYEDIYRDLESKDKEFYTQNGLLHM   88 (198)
T ss_dssp             CCEEEEEESSSSSHHHHHHHHHHHTTCEEEEEECSSSEEECCSSTTCCEEECTTCCHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred             CceEEEEcCCCCcccHHHHHHHHhCCCceeecCCCceeEcCCCCCCCCCccCCCCcHHHHHHHHHHhhHHHHHHcCcHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCCCCcccccccCCCCcccEEEeccchhHHHHHHHHhcCCCCCCceEEEEEecccCCHHHHHhhHHHHHHHHHHH
Q 029441           82 LKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEI  161 (193)
Q Consensus        82 LdRN~~iK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl~~R~~~~~~pVHViNvdIkDn~EeA~~Ga~~il~Lc~~l  161 (193)
                      |||||+||++|||||+|.+  .|||||||||||||+|||||++|+++++||||||||||+||||||++||++||+||++|
T Consensus        89 LdRNr~iK~~PERfQ~~~~--~fDvIiTcEERvfD~VvedL~~R~~~~~~pVHViNvDIkDn~EeA~~Ga~~ileL~~~l  166 (198)
T 3p9y_A           89 LDRNRRIKKCPERFQDTKE--QFDIIVTVEERVYDLVVMHMESMESVDNRPVHVLNVDVVNNAEDALMGAFVITDMINMM  166 (198)
T ss_dssp             HHHHHHHCSSCCBGGGCCC--CCSEEEESSHHHHHHHHHHHHTSCCSSCCEEEEEECCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCccccCCccchhccCC--CcCEEEEeechhHHHHHHHHHhcccCcCceEEEEEeeccCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999976  89999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHHcCCCcceeeccC
Q 029441          162 EAAESWEESIDDIIAAFEKRHRRKLLYSISFY  193 (193)
Q Consensus       162 ~~~~d~e~~i~~il~~fe~k~~~~~Lhtv~fY  193 (193)
                      ++++|||++|++||++||++++|++|||||||
T Consensus       167 ~~~~d~e~~i~~il~~fe~~~~~~~Lhtv~fY  198 (198)
T 3p9y_A          167 AKSTDLDNDIDELIQEFEERRKRVILHSVLFY  198 (198)
T ss_dssp             HTCSSHHHHHHHHHHHHHHHHTCCCEEEEEEC
T ss_pred             HHchhHHHHHHHHHHHHHHhcCCCceeeeecC
Confidence            99999999999999999999999999999999
>4h3k_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, phosphatase, RNA polymerase II, hydrolase; HET: SEP; 2.00A {Homo sapiens} PDB: 3o2q_B* 4h3h_B* 3o2s_B Back     alignment and structure
>3rof_A Low molecular weight protein-tyrosine-phosphatase; phosphatase, hydrolase; 1.03A {Staphylococcus aureus} Back     alignment and structure
>4egs_A Ribose 5-phosphate isomerase RPIB; tyrosine phosphatase, dephosphorylation, hydrolase; 2.30A {Thermoanaerobacter tengcongensis} Back     alignment and structure
>2wmy_A WZB, putative acid phosphatase WZB; hydrolase; 2.21A {Escherichia coli} Back     alignment and structure
>2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate binding, hydrolase; NMR {Escherichia coli K12} Back     alignment and structure
>2wja_A Putative acid phosphatase WZB; hydrolase; 2.50A {Escherichia coli} Back     alignment and structure
>1y1l_A Arsenate reductase (ARSC); detoxification, cadmium, oxidized form, structural genomics, PSI, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.44.1.1 Back     alignment and structure
>4etn_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.10A {Bacillus subtilis} PDB: 4eti_A 1zgg_A Back     alignment and structure
>1p8a_A Protein tyrosine phosphatase; hydrolase; NMR {Tritrichomonas foetus} SCOP: c.44.1.1 Back     alignment and structure
>1jf8_A Arsenate reductase; ptpase I fold, P-loop, sulfinic acid, oxidoreductase; 1.12A {Staphylococcus aureus} SCOP: c.44.1.1 PDB: 1jfv_A 2fxi_A 1lju_A* 1rxi_A 1rxe_A 1ljl_A 2cd7_A 1lk0_A Back     alignment and structure
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A Back     alignment and structure
>1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase; HET: 4NP; 1.70A {Saccharomyces cerevisiae} SCOP: c.44.1.1 PDB: 1d2a_A* 1d1p_A* Back     alignment and structure
>1jl3_A Arsenate reductase; alpha-beta fold, PTP-loop, oxidoreductase; 1.60A {Bacillus subtilis} SCOP: c.44.1.1 PDB: 1z2d_A 1z2e_A 2ipa_B Back     alignment and structure
>2gi4_A Possible phosphotyrosine protein phosphatase; low molecular weight, protein tyrosine phosphatase, bacterial phosphatase; NMR {Campylobacter jejuni} Back     alignment and structure
>3rh0_A Arsenate reductase; oxidoreductase; 1.72A {Corynebacterium glutamicum} Back     alignment and structure
>2l17_A Synarsc, arsenate reductase; alpha/beta sandwich, oxidoreductase; NMR {Synechocystis} PDB: 2l18_A 2l19_A Back     alignment and structure
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, hydrolase, protein-ligand complex; HET: NLA; 1.50A {Homo sapiens} SCOP: c.44.1.1 PDB: 5pnt_A* 1xww_A 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A Back     alignment and structure
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis} Back     alignment and structure
>3t38_A Arsenate reductase; low molecular weight tyrosine phosphatase fold, reduction of to arsenite, oxidoreductase; 2.20A {Corynebacterium glutamicum} Back     alignment and structure
>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, structural genomics; 1.90A {Thermus thermophilus} Back     alignment and structure
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A* Back     alignment and structure
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A Back     alignment and structure
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A Back     alignment and structure
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp} Back     alignment and structure
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} Back     alignment and structure
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile} Back     alignment and structure
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A Back     alignment and structure
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A Back     alignment and structure
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query193
d1dg9a_157 Tyrosine phosphatase {Cow (Bos taurus) [TaxId: 991 97.06
d1y1la_124 Arsenate reductase ArsC {Archaeoglobus fulgidus [T 97.05
d1d1qa_159 Tyrosine phosphatase {Baker's yeast (Saccharomyces 96.88
d1p8aa_146 Tyrosine phosphatase {Tritrichomonas foetus [TaxId 96.72
d1jf8a_130 Arsenate reductase ArsC {Staphylococcus aureus [Ta 93.73
>d1dg9a_ c.44.1.1 (A:) Tyrosine phosphatase {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphotyrosine protein phosphatases I-like
superfamily: Phosphotyrosine protein phosphatases I
family: Low-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine phosphatase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.06  E-value=0.00071  Score=49.89  Aligned_cols=110  Identities=16%  Similarity=0.210  Sum_probs=65.6

Q ss_pred             ceEEEEccCCCCcchHHHHhHHhC--------CCCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHHH
Q 029441            3 YRYAMVCSSNQNRSMEAHYLLKRH--------GFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYK   74 (193)
Q Consensus         3 l~~avVCasN~NRSMEaH~~L~~~--------g~~V~SfGTGs~VrLPGps~d~PNvY~FgT~Y~~iy~dL~~kd~~lY~   74 (193)
                      .+|-+||..|.-||=-|..+|++.        ++.|.|.||.+..  +|..++         |..   .       ..=+
T Consensus         6 k~ILFVCtgN~cRSpmAEal~~~~~~~~~l~~~~~v~SaG~~~~~--~g~~~~---------~~a---~-------~~l~   64 (157)
T d1dg9a_           6 KSVLFVCLGNICRSPIAEAVFRKLVTDQNISDNWVIDSGAVSDWN--VGRSPD---------PRA---V-------SCLR   64 (157)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHHHHTTCGGGEEEEEEESCSTT--TTCCCC---------HHH---H-------HHHH
T ss_pred             CeEEEEeCCcHHHHHHHHHHHHHHHHhcCCCccceEeeccccccc--CCCcCC---------HHH---H-------HHHH
Confidence            579999999999998899888743        3579999986432  233322         111   1       1223


Q ss_pred             hcCchhhhhcccCCCCCcccccccCCCCcccEEEeccchhHHHHHHHHhcCCCCCCceEEEE-------EecccCC
Q 029441           75 RNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVI-------NLEVKDN  143 (193)
Q Consensus        75 ~NGlL~MLdRN~~iK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl~~R~~~~~~pVHVi-------NvdIkDn  143 (193)
                      +.|+ .       +.-.+.++.... -..+|+|||.++.-+..+.+-.-.-. .....||.+       +.||.|-
T Consensus        65 ~~gi-d-------~~~~~~~~~~~~-~~~~DlIl~m~~~~~~~l~~~~p~~~-~~~~kv~~l~~~~~~~~~~I~DP  130 (157)
T d1dg9a_          65 NHGI-N-------TAHKARQVTKED-FVTFDYILCMDESNLRDLNRKSNQVK-NCRAKIELLGSYDPQKQLIIEDP  130 (157)
T ss_dssp             HTTC-C-------CCCCCCBCCTTH-HHHCSEEEESSHHHHHHHHHHHTTCT-TCCCEEEEGGGGCTTCCCCCCCC
T ss_pred             hcCc-c-------cccchhhhhHHh-hhcccccccchHHHHHHHHHhCCccc-cchheeeehhhhCCCCCCcCCCC
Confidence            3444 2       222223322211 01499999999999999888654322 233345554       4578884
>d1y1la_ c.44.1.1 (A:) Arsenate reductase ArsC {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1d1qa_ c.44.1.1 (A:) Tyrosine phosphatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p8aa_ c.44.1.1 (A:) Tyrosine phosphatase {Tritrichomonas foetus [TaxId: 5724]} Back     information, alignment and structure
>d1jf8a_ c.44.1.1 (A:) Arsenate reductase ArsC {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure