Citrus Sinensis ID: 029445

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
Protein Sequence
MACHFAYYYHAFSLTPLRDLSANNTNFRPSRKYKPLLFSSINSSSRASYGTFVSEAVRLLGPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLVSFSLPATATVPILYEKNSKTARTHL
Secondary Structure (PSIPRED)
ccEEEccccccccccccccccccccccccccccccccEEEccccccccccccccHHHHHHccccccccccEEEEEccccccccccccccEEEEccccccccEEEEEcccccHHHHHcccccccEEEEEEEcccEEEEEEEEEEEcccccHHHHHHHHHHHHHHccccccccccccccccEEEEccccHHcccc
Secondary Structure Prediction (SSPRO)
ccccEcEEEcccccccccHHccccccccccccccccccccccccccccccccHHHHHHHccccccccHHHEEEEEEcccccccccccccEEEEEccccccEEEEEEcHHHcHHHHcHHHHHHHHHHHHEHccccEEEEEEEEEcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHccccccccccc
Coil and Loop (DISEMBL)
machfayyyhafsltplrdlsanntnfrpsrkykpllfssinsssrasygtFVSEAVrllgppasfeasKLKVVFLGEgmndysrilprtyilsHCDFTANLTLTISNVINLEQLRGWYIKDDVVAEWKKVrddmclhvhcyvsgpsLLRDLAAEFRYHIftkemplvsfslpatatvpilyeknsktarthl
Flexible Loop (DISEMBL)
MACHFAYYYHAfsltplrdlsANNTNFRPSRKYKPLLFSSINSSSRASYGTFVSEAVRLLGPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTkemplvsfslpatatvpilyeknsktarthl
Low Complexity Region (SEG)
MACHFAYYYHAFSLTPLRDLSANNTNFRPSRKYKPLLFSSINSSSRASYGTFVSEAVRLLGPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLVSFSLPATATVPILYEKNSKTARTHL
Disordered region (IsUnstruct)
**CHFAYYYHAFSLTPLRDLSANNT*******YKPLLFSSI*****ASYGTFVSEAVRLLGPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLVSFSLPATATVPILY***********
Disordered Region (DISOPRED)
****F*YYYHAFSLTPLRD**********************************SEAVRLLGPPASFEASKLKVVFLG********ILPRTYILSHCDFTANLTLTISNVINLEQLRGWYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLVSFSLPATATVPILYEKNS*******
Disordered Region (DISEMBL)
MACHFAYYYHAFSLTPLRDLSANNTNFRPSRKYKPLLFSSINSSSRASYGTFVSEAVRLLGPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLVSFSLPATATVPILYEKN********
Disordered Region (DISPRO)
*ACHFAYYYHAFSLTPLRDLSAN*************************YGTFVSEAVRLLGPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLVSFSLPATATVPILYEKN********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MACHFAYYYHAFSLTPLRDLSANNTNFRPSRKYKPLLFSSINSSSRASYGTFVSEAVRLLGPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLVSFSLPATATVPILYEKNSKTARTHL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
224066773	222	predicted protein [Populus trichocarpa]	0.854	0.743	0.710	3e-60
225459718	251	PREDICTED: uncharacterized protein LOC10	0.849	0.653	0.656	5e-57
356515951	251	PREDICTED: uncharacterized protein LOC10	0.854	0.657	0.645	9e-54
255645687	251	unknown [Glycine max]	0.854	0.657	0.645	9e-54
356509357	254	PREDICTED: uncharacterized protein LOC10	0.854	0.649	0.628	2e-53
302141737	232	unnamed protein product [Vitis vinifera]	0.746	0.620	0.689	2e-53
449453011	244	PREDICTED: uncharacterized protein LOC10	0.823	0.651	0.654	4e-52
255558494	249	conserved hypothetical protein [Ricinus	0.823	0.638	0.643	3e-51
297852188	258	hypothetical protein ARALYDRAFT_891373 [	0.870	0.651	0.602	2e-47
8778672	299	F9C16.20 [Arabidopsis thaliana]	0.860	0.555	0.588	4e-46

>gi|224066773|ref|XP_002302208.1| predicted protein [Populus trichocarpa] gi|222843934|gb|EEE81481.1| predicted protein [Populus trichocarpa]

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 120/169 (71%), Positives = 135/169 (79%), Gaps = 4/169 (2%)

Query: 1   MACHFAYYYHAFSLTP-LRDLSANNTNFRPSRKYKPLLFSSINSSSRASYGTFVSEAVRL 59
           MACH A+Y  AFS +P +R  S NN     S+  KP + SSI++S RASY T VSEAVRL
Sbjct: 5   MACHCAHY--AFSPSPHMRYFSINNITKLSSKVTKPTVLSSIDNS-RASYNTLVSEAVRL 61

Query: 60  LGPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWY 119
           LGPPA FEASKLKVV +GE MN YS I+PRTYILSHCDFTA+LTL ISNVINL+QLRGWY
Sbjct: 62  LGPPAKFEASKLKVVLMGEEMNQYSAIIPRTYILSHCDFTADLTLIISNVINLDQLRGWY 121

Query: 120 IKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLV 168
            KDDVV EWKK+   + LH HCYVSGP+LL DLAAEFRYHIF+KEMPLV
Sbjct: 122 SKDDVVVEWKKLEGQLALHAHCYVSGPNLLLDLAAEFRYHIFSKEMPLV 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459718|ref|XP_002284727.1| PREDICTED: uncharacterized protein LOC100252353 [Vitis vinifera]

 Score =  226 bits (575), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 111/169 (65%), Positives = 135/169 (79%), Gaps = 5/169 (2%)

Query: 1   MACHFAYYYHAFSLTPLRD-LSANNTNFRPSRKYKPLLFSSINSSSRASYGTFVSEAVRL 59
           MACH A+    FS +P RD  S  +T+ +PSR  KP++ SSI S+ +ASY   V EA RL
Sbjct: 1   MACHCAF---PFSPSPQRDCFSMTHTSLKPSRASKPVVLSSIGST-KASYNALVFEAARL 56

Query: 60  LGPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWY 119
           LGPPA F+ASKLKVV +GE +++YS I PR Y LSHCDFTANLTLTISN+I+L+QL+GWY
Sbjct: 57  LGPPAKFDASKLKVVPMGEEIDNYSGISPRVYTLSHCDFTANLTLTISNIISLDQLKGWY 116

Query: 120 IKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLV 168
            KDDVVAEWK+V+ + CLHVHCY+SGPSL  DLAAEFRYHIF+KE+PLV
Sbjct: 117 NKDDVVAEWKEVKGEKCLHVHCYLSGPSLFLDLAAEFRYHIFSKELPLV 165

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515951|ref|XP_003526660.1| PREDICTED: uncharacterized protein LOC100795181 [Glycine max]

 Score =  215 bits (547), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 111/172 (64%), Positives = 130/172 (75%), Gaps = 7/172 (4%)

Query: 1   MACHFAYYYHAFSLTPLRDLSA-NNTNFRPSR---KYKPLLFSSINSSSRASYGTFVSEA 56
           MACH A Y +AFS +P R+  A N+   +PS    + +P L S  N++   SY T VSEA
Sbjct: 1   MACHCASY-NAFSFSPTREFFATNHIMSKPSSTTTRCRPFLLSITNAT--PSYNTLVSEA 57

Query: 57  VRLLGPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLR 116
           VRLL P A FE SKLKVV L + +N ++   PRTYILSHCDFTANLTL +SNVINLEQLR
Sbjct: 58  VRLLVPSARFEPSKLKVVLLEDQINKHASFTPRTYILSHCDFTANLTLAVSNVINLEQLR 117

Query: 117 GWYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLV 168
           GWY KDDVVAEWKKV++DMCLHVHC+VSGP+   DLAAE RYHIF+KEMPLV
Sbjct: 118 GWYEKDDVVAEWKKVQNDMCLHVHCFVSGPNSFLDLAAELRYHIFSKEMPLV 169

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645687|gb|ACU23337.1| unknown [Glycine max]

 Score =  215 bits (547), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 111/172 (64%), Positives = 130/172 (75%), Gaps = 7/172 (4%)

Query: 1   MACHFAYYYHAFSLTPLRDLSA-NNTNFRPSR---KYKPLLFSSINSSSRASYGTFVSEA 56
           MACH A Y +AFS +P R+  A N+   +PS    + +P L S  N++   SY T VSEA
Sbjct: 1   MACHCASY-NAFSFSPTREFFATNHIMSKPSSTTTRCRPFLLSITNAT--PSYNTLVSEA 57

Query: 57  VRLLGPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLR 116
           VRLL P A FE SKLKVV L + +N ++   PRTYILSHCDFTANLTL +SNVINLEQLR
Sbjct: 58  VRLLVPSARFEPSKLKVVLLEDQINKHASFTPRTYILSHCDFTANLTLAVSNVINLEQLR 117

Query: 117 GWYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLV 168
           GWY KDDVVAEWKKV++DMCLHVHC+VSGP+   DLAAE RYHIF+KEMPLV
Sbjct: 118 GWYEKDDVVAEWKKVQNDMCLHVHCFVSGPNSFLDLAAELRYHIFSKEMPLV 169

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509357|ref|XP_003523416.1| PREDICTED: uncharacterized protein LOC100792871 [Glycine max]

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 110/175 (62%), Positives = 132/175 (75%), Gaps = 10/175 (5%)

Query: 1   MACHFAYYYHAFSLTPLRDL----SANNTNFRPSR---KYKPLLFSSINSSSRASYGTFV 53
           MACH A Y +AF+ +P R+     + N+   + S    + +P L S  N++   SY T V
Sbjct: 1   MACHCASY-NAFTFSPTREFITTTTTNHIMSKTSSTTTRCRPFLLSITNAT--PSYNTLV 57

Query: 54  SEAVRLLGPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLE 113
           SEAVRLL P A FEASKLKVV L + +N ++ I+PRTYILSHCDFTANLTL +SNVINLE
Sbjct: 58  SEAVRLLVPSARFEASKLKVVLLEDQINKHASIIPRTYILSHCDFTANLTLAVSNVINLE 117

Query: 114 QLRGWYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLV 168
           QLRGWY KDDVVAEWKKV++DMCLHVHC+VSGP+   DLAAE RYHIF+KEMPLV
Sbjct: 118 QLRGWYEKDDVVAEWKKVQNDMCLHVHCFVSGPNSFLDLAAELRYHIFSKEMPLV 172

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141737|emb|CBI18940.3| unnamed protein product [Vitis vinifera]

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/145 (68%), Positives = 122/145 (84%), Gaps = 1/145 (0%)

Query: 24  NTNFRPSRKYKPLLFSSINSSSRASYGTFVSEAVRLLGPPASFEASKLKVVFLGEGMNDY 83
           +T+ +PSR  KP++ SSI S+ +ASY   V EA RLLGPPA F+ASKLKVV +GE +++Y
Sbjct: 3   HTSLKPSRASKPVVLSSIGST-KASYNALVFEAARLLGPPAKFDASKLKVVPMGEEIDNY 61

Query: 84  SRILPRTYILSHCDFTANLTLTISNVINLEQLRGWYIKDDVVAEWKKVRDDMCLHVHCYV 143
           S I PR Y LSHCDFTANLTLTISN+I+L+QL+GWY KDDVVAEWK+V+ + CLHVHCY+
Sbjct: 62  SGISPRVYTLSHCDFTANLTLTISNIISLDQLKGWYNKDDVVAEWKEVKGEKCLHVHCYL 121

Query: 144 SGPSLLRDLAAEFRYHIFTKEMPLV 168
           SGPSL  DLAAEFRYHIF+KE+PLV
Sbjct: 122 SGPSLFLDLAAEFRYHIFSKELPLV 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453011|ref|XP_004144252.1| PREDICTED: uncharacterized protein LOC101219336 [Cucumis sativus] gi|449517751|ref|XP_004165908.1| PREDICTED: uncharacterized protein LOC101229994 [Cucumis sativus]

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 110/168 (65%), Positives = 129/168 (76%), Gaps = 9/168 (5%)

Query: 1   MACHFAYYYHAFSLTPLRDLSANNTNFRPSRKYKPLLFSSINSSSRASYGTFVSEAVRLL 60
           MA H   Y  +FS +P +       NF+  ++  P L  S  S++ ASY T VSEAVR+L
Sbjct: 1   MALHCVRY--SFSPSPAK------PNFKLVQRNNPALLFSSFSTTPASYNTLVSEAVRIL 52

Query: 61  GPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWYI 120
            PPA FEASKLKVVF  E +   + I+PRTYILSHCDFTANLTLTIS+VINL+QLRGWY 
Sbjct: 53  VPPARFEASKLKVVFSRE-VTKSAGIIPRTYILSHCDFTANLTLTISDVINLDQLRGWYN 111

Query: 121 KDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLV 168
           KDDVVAEWKKV+D+MCLHVHCYVSGPS L D+AAEFRYHIF+KE+PLV
Sbjct: 112 KDDVVAEWKKVKDEMCLHVHCYVSGPSSLLDVAAEFRYHIFSKELPLV 159

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558494|ref|XP_002520272.1| conserved hypothetical protein [Ricinus communis] gi|223540491|gb|EEF42058.1| conserved hypothetical protein [Ricinus communis]

 Score =  206 bits (524), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 110/171 (64%), Positives = 128/171 (74%), Gaps = 12/171 (7%)

Query: 1   MACHFAYYYHAFSLTPLRD---LSANNTNFRPSRKYKPLLFSSINSSSRASYGTFVSEAV 57
           MACH A    AFSL+P RD   ++ NNT F   R    ++  SI + S A++ T VSEAV
Sbjct: 1   MACHSA----AFSLSPCRDYFSINTNNTKFF-KRSRPAVVICSITNRS-ANFNTLVSEAV 54

Query: 58  RLLGPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRG 117
           R L PPA FEASKLKVV + + +ND   I+PRTYILSHCDFTA LTLTISNVINL+QLRG
Sbjct: 55  RHLVPPARFEASKLKVVLMEDQIND---IIPRTYILSHCDFTAELTLTISNVINLDQLRG 111

Query: 118 WYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLV 168
           WY KDDVVAEWKK+   + LH+HCYVSGP+L  DLAAE RYHIF+KEMPLV
Sbjct: 112 WYSKDDVVAEWKKLEGQLALHIHCYVSGPNLALDLAAELRYHIFSKEMPLV 162

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852188|ref|XP_002893975.1| hypothetical protein ARALYDRAFT_891373 [Arabidopsis lyrata subsp. lyrata] gi|297339817|gb|EFH70234.1| hypothetical protein ARALYDRAFT_891373 [Arabidopsis lyrata subsp. lyrata]

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 106/176 (60%), Positives = 126/176 (71%), Gaps = 8/176 (4%)

Query: 1   MACHFAYYYHAFSLT-PLRDLSANNTNFRPSRKYKPLLF----SSINSSSRASYGTFVSE 55
           MAC+   YYH   L+ P R++ ++  + R S K          SS  S    SY T VSE
Sbjct: 1   MACYIVPYYHNPVLSHPNREIISHRHHHRFSNKLLKTRIRVPRSSAISDGGVSYNTLVSE 60

Query: 56  AVRLLGPPASFEASKLKVVFLGEGMNDYSR---ILPRTYILSHCDFTANLTLTISNVINL 112
           AVRLL P A+F++SKLKV FLGE + + S    I PRTYILSHCDFTANLTLTISNVINL
Sbjct: 61  AVRLLVPQANFDSSKLKVEFLGELLENKSSGGIITPRTYILSHCDFTANLTLTISNVINL 120

Query: 113 EQLRGWYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLV 168
           +QL GWY KDDVVAEWKKV D++ LH+HC VSG SLL+D+AAE RYHIF+KE+PLV
Sbjct: 121 DQLEGWYKKDDVVAEWKKVNDELRLHIHCCVSGMSLLQDVAAELRYHIFSKELPLV 176

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8778672|gb|AAF79680.1|AC022314_21 F9C16.20 [Arabidopsis thaliana]

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 106/180 (58%), Positives = 125/180 (69%), Gaps = 14/180 (7%)

Query: 1   MACHFAYYYHAFSLT-PLRDLSANN--------TNFRPSRKYKPLLFSSINSSSRASYGT 51
           MAC+   YYH   L+ P R++ ++          N    R   P   SS  S    SY T
Sbjct: 1   MACYIVPYYHHPVLSHPNREIFSHRHHHHHRFCNNLLNRRISVPR--SSAISDGGVSYNT 58

Query: 52  FVSEAVRLLGPPASFEASKLKVVFLGEGMNDYSR---ILPRTYILSHCDFTANLTLTISN 108
            VSEAVRLL P A+F++SKLKV FLGE + + S    I PRTYILSHCDFTANLTLTISN
Sbjct: 59  LVSEAVRLLVPQANFDSSKLKVEFLGELLENKSNGGIITPRTYILSHCDFTANLTLTISN 118

Query: 109 VINLEQLRGWYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLV 168
           VINL+QL GWY KDDVVAEWKKV D++ LH+HC VSG SLL+D+AAE RYHIF+KE+PLV
Sbjct: 119 VINLDQLEGWYKKDDVVAEWKKVNDELRLHIHCCVSGMSLLQDVAAELRYHIFSKELPLV 178

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
TAIR|locus:2037154	260	AT1G44000 "AT1G44000" [Arabido	0.865	0.642	0.592	2.7e-45
TAIR|locus:2127153	268	NYE1 "AT4G22920" [Arabidopsis	0.797	0.574	0.478	5.6e-29
TAIR|locus:2137020	271	AT4G11910 "AT4G11910" [Arabido	0.740	0.527	0.467	1.7e-27
TAIR|locus:4515103377	273	AT4G11911 "AT4G11911" [Arabido	0.658	0.465	0.511	2.2e-27

TAIR|locus:2037154 AT1G44000 "AT1G44000" [Arabidopsis thaliana (taxid:3702)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 106/179 (59%), Positives = 126/179 (70%)

Query:     1 MACHFAYYYHAFSLT-PLRDLSANNTNFRPSRKYKPLLF-------SSINSSSRASYGTF 52
             MAC+   YYH   L+ P R++ ++  +    R    LL        SS  S    SY T 
Sbjct:     1 MACYIVPYYHHPVLSHPNREIFSHRHHHH-HRFCNNLLNRRISVPRSSAISDGGVSYNTL 59

Query:    53 VSEAVRLLGPPASFEASKLKVVFLGEGMNDYSR---ILPRTYILSHCDFTANLTLTISNV 109
             VSEAVRLL P A+F++SKLKV FLGE + + S    I PRTYILSHCDFTANLTLTISNV
Sbjct:    60 VSEAVRLLVPQANFDSSKLKVEFLGELLENKSNGGIITPRTYILSHCDFTANLTLTISNV 119

Query:   110 INLEQLRGWYIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLV 168
             INL+QL GWY KDDVVAEWKKV D++ LH+HC VSG SLL+D+AAE RYHIF+KE+PLV
Sbjct:   120 INLDQLEGWYKKDDVVAEWKKVNDELRLHIHCCVSGMSLLQDVAAELRYHIFSKELPLV 178

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009658 "chloroplast organization" evidence=IMP

TAIR|locus:2127153 NYE1 "AT4G22920" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 77/161 (47%), Positives = 95/161 (59%)

Query:    11 AFSLTPLRDLSANNTNFRPSRKYKPLLFSSINSSSRASYGTFVSEAVRLLGPPASFEASK 70
             A  L P +   A +     S     L F+  N  S+    + V  A RL GP A FE+SK
Sbjct:     6 AIMLLPTKLKPAYSDKRSNSSSSSSLFFN--NRRSKKKNQSIVPVA-RLFGP-AIFESSK 61

Query:    71 LKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGW---YIKDDVVAE 127
             LKV+FLG     +   LPRTY L+H D TA LTL IS  IN  QL+GW     +D+VVAE
Sbjct:    62 LKVLFLGVDEKKHPSTLPRTYTLTHSDITAKLTLAISQSINNSQLQGWANRLYRDEVVAE 121

Query:   128 WKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLV 168
             WKKV+  M LHVHC++SG   L DL A+FRY IF KE+P+V
Sbjct:   122 WKKVKGKMSLHVHCHISGGHFLLDLFAKFRYFIFCKELPVV 162

GO:0015996 "chlorophyll catabolic process" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2137020 AT4G11910 "AT4G11910" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 72/154 (46%), Positives = 91/154 (59%)

Query:    25 TNFRPSRKYKPLLFSSINSSS-----RASY--GTFVSEAVRLLGPPASFEASKLKVVFLG 77
             TN     K KP+    +++SS     R S      +    RL GP A FEASKLKV+FLG
Sbjct:     6 TNLLLPSKMKPVFPEKLSTSSLCVTTRRSKMKNRSIVPVARLFGP-AIFEASKLKVLFLG 64

Query:    78 EGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGW---YIKDDVVAEWKKVRDD 134
                  +   LPRTY L+H D TA LTL IS  IN  QL+GW     +D+VV EWKKV+  
Sbjct:    65 VDEKKHPAKLPRTYTLTHSDITAKLTLAISQSINNSQLQGWANKLFRDEVVGEWKKVKGK 124

Query:   135 MCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLV 168
             M LHVHC++SG     +L A+ RY+IF KE+P+V
Sbjct:   125 MSLHVHCHISGGHFFLNLIAKLRYYIFCKELPVV 158

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:4515103377 AT4G11911 "AT4G11911" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 68/133 (51%), Positives = 82/133 (61%)

Query:    39 SSINSSSRASYGTFVSEAVRLLGPPASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDF 98
             S+  SS R     F     RL G  A FEASKL V FLG     +   LPRTY  +H D 
Sbjct:    29 STTRSSKRKKQSMF--PVARLFGQ-AIFEASKLNVKFLGVDEKKHPPNLPRTYTFTHSDI 85

Query:    99 TANLTLTISNVINLEQLRGW---YIKDDVVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAE 155
             TA LTL IS+ IN  QL+GW     +D+VVAEW+KV+ +M LHVHC++SG   L DL AE
Sbjct:    86 TAKLTLAISHSINNSQLQGWANRLYRDEVVAEWRKVKSNMSLHVHCHISGDHFLLDLIAE 145

Query:   156 FRYHIFTKEMPLV 168
              RY IF KE+P+V
Sbjct:   146 LRYFIFCKELPMV 158


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.135   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      193       193   0.00098  110 3  11 22  0.40    32
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  169 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.54u 0.19s 17.73t   Elapsed:  00:00:01
  Total cpu time:  17.55u 0.19s 17.74t   Elapsed:  00:00:01
  Start:  Fri May 10 21:12:06 2013   End:  Fri May 10 21:12:07 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	193
pfam12638	149	pfam12638, Staygreen, Staygreen protein	3e-46

>gnl|CDD|221681 pfam12638, Staygreen, Staygreen protein

 Score =  148 bits (377), Expect = 3e-46
 Identities = 60/105 (57%), Positives = 71/105 (67%), Gaps = 3/105 (2%)

Query: 64  ASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWYIKDD 123
           A F+ SKL V FLG        I+PR Y L+H D TANLTLTI N  NL+QL     +D+
Sbjct: 1   AKFDPSKLSVEFLGPITETGP-IIPRRYTLTHSDVTANLTLTIGNTYNLDQLNTLL-RDE 58

Query: 124 VVAEWKKVRDDMCLHVHCYVSGPSLLRDLAAEFRYHIFTKEMPLV 168
           V+AEWKKV     LHVHCYVSG +L  DLAA+ RY+IF KE+PLV
Sbjct: 59  VLAEWKKVNGQYSLHVHCYVSGGNLDLDLAAK-RYYIFRKELPLV 102

This family of proteins have been implicated in chlorophyll degradation. Intriguingly members of this family are also found in non-photosynthetic bacteria. Length = 149

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	193
PF12638	151	Staygreen: Staygreen protein; InterPro: IPR024438	100.0

>PF12638 Staygreen: Staygreen protein; InterPro: IPR024438 This domain is found in a family of proteins have been implicated in chlorophyll degradation [, ]

Probab=100.00  E-value=1.3e-55  Score=359.83  Aligned_cols=114  Identities=46%  Similarity=0.729  Sum_probs=108.9

Q ss_pred             CCCCCCccEEEEecCCCCCCCCCCCceeeeccCCCCcceEEEEehhcchhhhccccccceEEEEEEecCCeeEEEEEEEE
Q 029445           64 ASFEASKLKVVFLGEGMNDYSRILPRTYILSHCDFTANLTLTISNVINLEQLRGWYIKDDVVAEWKKVRDDMCLHVHCYV  143 (193)
Q Consensus        64 ~~Fnp~KLsV~f~g~~~t~~~PiiPRrYTLTHSD~T~~LfLtIg~~fn~dqL~~w~~RDEVlAEW~~~~g~~~LhVyc~V  143 (193)
                      ++|||+||+|+|+ .+++++.|++||||||||||+||+|||+||.+||+|||.+|++||||||||++++|+|+|||||||
T Consensus         1 ~~F~p~KL~V~f~-~~~t~~~P~~pR~YTLTHsD~T~~L~L~Ig~~~~~d~l~~~~~RDEVlaEW~~~~~~~~L~v~~~V   79 (151)
T PF12638_consen    1 MKFNPSKLSVEFR-GGITPTHPIIPRRYTLTHSDFTGELFLTIGNEFNYDQLYNRLMRDEVLAEWKKVNGQYSLHVYCYV   79 (151)
T ss_pred             CCCChHHeEEEec-CCCCcCCCCCCceEEeecCCccCceEEEeeHHhhHHHhhccchhceEEEEEEEcCCEEEEEEEEEE
Confidence            3899999999999 889999999999999999999999999999999999994468999999999999999999999999


Q ss_pred             eCCCcchhhHHHHHHHHHHhhhhhhhhcccCCCcc
Q 029445          144 SGPSLLRDLAAEFRYHIFTKEMPLVSFSLPATATV  178 (193)
Q Consensus       144 sG~~~~~~~~A~~Ry~IFrkELPLaLkAIrygd~~  178 (193)
                      ||+|++++++|.+||+||+||||||||||+|||+.
T Consensus        80 ~g~~~~~~~aa~~Ry~IF~kELPl~L~Ai~yGD~~  114 (151)
T PF12638_consen   80 SGGHFDKDLAARLRYYIFRKELPLALKAIRYGDRS  114 (151)
T ss_pred             CCCccChhHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence            99999999877889999999999999999999974

Intriguingly members of this family are also found in non-photosynthetic bacteria.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00