Citrus Sinensis ID: 029490

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
Protein Sequence
MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVKYFSCSDRKMQELHFLILGSLSSQSALWLFYRMNSWWAKARS
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
msieqpqpsqnLNQLMLQQssgnlsfsssnlskddeEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNkelkplghtcQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVKYFSCSDRKMQELHFLILGSLSSQSALWLFYRMNswwakars
Flexible Loop (DISEMBL)
msieqpqpsqNLNQLMLQQSSGNLSFSSsnlskddeEMSRSALTtfrakeeeiekkklevrekvqahlgrveeetkrLATIREElealadpmrkeVAVVRKKidsvnkelkplghtcqkkEREYKEALEAFNEKNKEKVQLITKLMEVSVKYFSCSDRKMQELHFLILGSLSSQSALWLFYRMNSWWAKARS
Low Complexity Region (SEG)
MSIEqpqpsqnlnqlmlqqssgnlsfsssnlsKDDEEMSRSALTTFRAkeeeiekkklevrekVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVKYFSCSDRKMQELHFLILGSLSSQSALWLFYRMNSWWAKARS
Disordered region (IsUnstruct)
*************************************************************************************************VV**************************************KVQLITKLMEVSVKYFSCSDRKMQELHFLILGSLSSQSALWLFYRMNSWWA****
Disordered Region (DISOPRED)
*********************************************************************************REELEALADPMRKEVAVVRKKIDSVNKELKPL**TCQKKEREYKEALEAFNEKNKEKVQLITKLMEVS*************************SALWLFYRMNSWWA*A**
Disordered Region (DISEMBL)
*********QNLNQLMLQQS**********************LTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVKYFSCSDRKMQELHFLILGSLSSQSALWLFYRMNSWWAKARS
Disordered Region (DISPRO)
*********QNLNQLMLQ*************************TTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVKYFSCSDRKMQELHFLILGSLSSQSALWLFYRMNSWWAK***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTxxxxxxxxxxxxxxxxxxxxxKVQLITKLMEVSVKYFSCSDRKMQELHFLILGSLSSQSALWLFYRMNSWWAKARS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
351723393	164	uncharacterized protein LOC100499923 [Gl	0.802	0.939	0.774	1e-58
255595013	149	conserved hypothetical protein [Ricinus	0.713	0.919	0.847	4e-58
255637447	164	unknown [Glycine max]	0.802	0.939	0.767	4e-58
351724745	167	uncharacterized protein LOC100527015 [Gl	0.802	0.922	0.753	2e-56
388511961	166	unknown [Lotus japonicus]	0.817	0.945	0.729	9e-56
449440207	167	PREDICTED: uncharacterized protein LOC10	0.666	0.766	0.868	2e-55
297823455	191	hypothetical protein ARALYDRAFT_482617 [	0.692	0.696	0.75	9e-52
30686787	192	uncharacterized protein [Arabidopsis tha	0.692	0.692	0.75	1e-51
18404123	195	uncharacterized protein [Arabidopsis tha	0.692	0.682	0.75	1e-51
21592509	195	unknown [Arabidopsis thaliana]	0.692	0.682	0.75	1e-51

>gi|351723393|ref|NP_001238045.1| uncharacterized protein LOC100499923 [Glycine max] gi|255627713|gb|ACU14201.1| unknown [Glycine max]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 120/155 (77%), Positives = 140/155 (90%), Gaps = 1/155 (0%)

Query: 9   SQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHL 68
           S+N N  ++ Q+SG+LSFSS +LSK+DEEMSRSAL+TFRAKEEEIE+KK+EVREKVQ  L
Sbjct: 3   SENQNNQLVVQNSGSLSFSS-HLSKEDEEMSRSALSTFRAKEEEIERKKMEVREKVQLQL 61

Query: 69  GRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEAL 128
           GRVEEETKRLATIREELEALADPMRKEVA+VRK+IDSVNKELKPLGHTCQKKE+EYK+AL
Sbjct: 62  GRVEEETKRLATIREELEALADPMRKEVALVRKRIDSVNKELKPLGHTCQKKEKEYKDAL 121

Query: 129 EAFNEKNKEKVQLITKLMEVSVKYFSCSDRKMQEL 163
           EAFNEKN+EKVQLITKLME+  +      +K++EL
Sbjct: 122 EAFNEKNREKVQLITKLMELVGESERLRMKKLEEL 156

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255595013|ref|XP_002536212.1| conserved hypothetical protein [Ricinus communis] gi|223520454|gb|EEF26171.1| conserved hypothetical protein [Ricinus communis]

 Score =  229 bits (585), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 117/138 (84%), Positives = 130/138 (94%), Gaps = 1/138 (0%)

Query: 16  MLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEET 75
           ++ Q+SG+LSFSS  +SK+DEEMSRSAL+TFRAKEEEIE+KKLEVREKVQA LGRVEEET
Sbjct: 12  LMVQTSGSLSFSS-QMSKEDEEMSRSALSTFRAKEEEIERKKLEVREKVQAQLGRVEEET 70

Query: 76  KRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKN 135
           KRLA IREELEALADPMRKEVA+VRKKID+VNKELKPLGHT QKKE+EYKEALEAFN+KN
Sbjct: 71  KRLAMIREELEALADPMRKEVALVRKKIDAVNKELKPLGHTVQKKEKEYKEALEAFNDKN 130

Query: 136 KEKVQLITKLMEVSVKYF 153
           KEKVQLITKLMEV + YF
Sbjct: 131 KEKVQLITKLMEVWISYF 148

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637447|gb|ACU19051.1| unknown [Glycine max]

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 119/155 (76%), Positives = 140/155 (90%), Gaps = 1/155 (0%)

Query: 9   SQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHL 68
           S+N N  ++ Q+SG+LSFSS +LSK+DEE+SRSAL+TFRAKEEEIE+KK+EVREKVQ  L
Sbjct: 3   SENQNNQLVVQNSGSLSFSS-HLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQLQL 61

Query: 69  GRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEAL 128
           GRVEEETKRLATIREELEALADPMRKEVA+VRK+IDSVNKELKPLGHTCQKKE+EYK+AL
Sbjct: 62  GRVEEETKRLATIREELEALADPMRKEVALVRKRIDSVNKELKPLGHTCQKKEKEYKDAL 121

Query: 129 EAFNEKNKEKVQLITKLMEVSVKYFSCSDRKMQEL 163
           EAFNEKN+EKVQLITKLME+  +      +K++EL
Sbjct: 122 EAFNEKNREKVQLITKLMELVSESERLRMKKLEEL 156

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724745|ref|NP_001237324.1| uncharacterized protein LOC100527015 [Glycine max] gi|255631368|gb|ACU16051.1| unknown [Glycine max]

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 119/158 (75%), Positives = 140/158 (88%), Gaps = 4/158 (2%)

Query: 9   SQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHL 68
           S+N N  ++ Q+SG+LSFSS +LSK+DEE+SRSAL+TFRAKEEEIE+KK+EVREKVQ  L
Sbjct: 3   SENQNNQLVVQNSGSLSFSS-HLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQLQL 61

Query: 69  GRVEEETKRLATIREE---LEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYK 125
           GRVEEETKRLATIREE   LEALADPMRKEVA+VRK+IDSVNKELKPLGHTCQKKE+EYK
Sbjct: 62  GRVEEETKRLATIREEYQELEALADPMRKEVALVRKRIDSVNKELKPLGHTCQKKEKEYK 121

Query: 126 EALEAFNEKNKEKVQLITKLMEVSVKYFSCSDRKMQEL 163
           +ALEAFNEKN+EKVQLITKLME+  +      +K++EL
Sbjct: 122 DALEAFNEKNREKVQLITKLMELVSESERLRMKKLEEL 159

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511961|gb|AFK44042.1| unknown [Lotus japonicus]

 Score =  221 bits (564), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 116/159 (72%), Positives = 138/159 (86%), Gaps = 2/159 (1%)

Query: 5   QPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKV 64
           Q    Q  NQL++Q +SG+LSFSS  +SK+DEEMSRSAL+ F+AKEEEIE+KK+EVREKV
Sbjct: 2   QGGGEQQNNQLVVQ-NSGSLSFSSQ-MSKEDEEMSRSALSNFKAKEEEIERKKMEVREKV 59

Query: 65  QAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREY 124
           Q  LGRVEEETKRLATIREELE+LADPMRKEV +VRK+IDSVNKELKPLGHTCQKKE+EY
Sbjct: 60  QLQLGRVEEETKRLATIREELESLADPMRKEVTIVRKRIDSVNKELKPLGHTCQKKEKEY 119

Query: 125 KEALEAFNEKNKEKVQLITKLMEVSVKYFSCSDRKMQEL 163
           K+ALEAFNEKN+EKVQLIT+LME+  +      +K++EL
Sbjct: 120 KDALEAFNEKNREKVQLITRLMELVSESERLRMKKLEEL 158

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440207|ref|XP_004137876.1| PREDICTED: uncharacterized protein LOC101210169 isoform 1 [Cucumis sativus] gi|449440209|ref|XP_004137877.1| PREDICTED: uncharacterized protein LOC101210169 isoform 2 [Cucumis sativus] gi|449516930|ref|XP_004165499.1| PREDICTED: uncharacterized protein LOC101227916 [Cucumis sativus]

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 112/129 (86%), Positives = 125/129 (96%), Gaps = 1/129 (0%)

Query: 20  SSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLA 79
           ++G+LSFSS +LSK+DEE+SRSAL+TFRAKEEEIE+KK+EVREKVQA LGRVEEETKRLA
Sbjct: 17  NTGSLSFSS-HLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLA 75

Query: 80  TIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKV 139
            IREELEALADPMRKEVA VRKKID+VNKELKPLGHTCQKKE+EYKEALEAFN+KNKEKV
Sbjct: 76  CIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKV 135

Query: 140 QLITKLMEV 148
           QLITKLME+
Sbjct: 136 QLITKLMEL 144

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823455|ref|XP_002879610.1| hypothetical protein ARALYDRAFT_482617 [Arabidopsis lyrata subsp. lyrata] gi|297325449|gb|EFH55869.1| hypothetical protein ARALYDRAFT_482617 [Arabidopsis lyrata subsp. lyrata]

 Score =  208 bits (529), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 102/136 (75%), Positives = 127/136 (93%), Gaps = 3/136 (2%)

Query: 13  NQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVE 72
           N+++L   +G+LSFSS ++S++DEEM+RSAL+ FRAKE+EIEK+++EVRE++QA LGRVE
Sbjct: 34  NEMVLH--TGSLSFSS-HMSREDEEMTRSALSAFRAKEDEIEKRRMEVRERIQAQLGRVE 90

Query: 73  EETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFN 132
           +ETKRL+TIREELE++ADPMRKEV+VVRKKIDSVNKELKPLG T QKKEREYKEAL+ FN
Sbjct: 91  QETKRLSTIREELESMADPMRKEVSVVRKKIDSVNKELKPLGSTVQKKEREYKEALDTFN 150

Query: 133 EKNKEKVQLITKLMEV 148
           EKN+EKVQLITKLME+
Sbjct: 151 EKNREKVQLITKLMEM 166

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30686787|ref|NP_850265.1| uncharacterized protein [Arabidopsis thaliana] gi|110736604|dbj|BAF00267.1| hypothetical protein [Arabidopsis thaliana] gi|330254155|gb|AEC09249.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 102/136 (75%), Positives = 127/136 (93%), Gaps = 3/136 (2%)

Query: 13  NQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVE 72
           N+++L   +G+LSFSS ++S++DEEM+RSAL+ FRAKE+EIEK+++EVRE++QA LGRVE
Sbjct: 38  NEMVLH--TGSLSFSS-HMSREDEEMTRSALSAFRAKEDEIEKRRMEVRERIQAQLGRVE 94

Query: 73  EETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFN 132
           +ETKRL+TIREELE++ADPMRKEV+VVRKKIDSVNKELKPLG T QKKEREYKEAL+ FN
Sbjct: 95  QETKRLSTIREELESMADPMRKEVSVVRKKIDSVNKELKPLGSTVQKKEREYKEALDTFN 154

Query: 133 EKNKEKVQLITKLMEV 148
           EKN+EKVQLITKLME+
Sbjct: 155 EKNREKVQLITKLMEL 170

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404123|ref|NP_565846.1| uncharacterized protein [Arabidopsis thaliana] gi|20197926|gb|AAD24625.2| expressed protein [Arabidopsis thaliana] gi|22135968|gb|AAM91566.1| unknown protein [Arabidopsis thaliana] gi|23198268|gb|AAN15661.1| unknown protein [Arabidopsis thaliana] gi|330254156|gb|AEC09250.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 102/136 (75%), Positives = 127/136 (93%), Gaps = 3/136 (2%)

Query: 13  NQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVE 72
           N+++L   +G+LSFSS ++S++DEEM+RSAL+ FRAKE+EIEK+++EVRE++QA LGRVE
Sbjct: 38  NEMVLH--TGSLSFSS-HMSREDEEMTRSALSAFRAKEDEIEKRRMEVRERIQAQLGRVE 94

Query: 73  EETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFN 132
           +ETKRL+TIREELE++ADPMRKEV+VVRKKIDSVNKELKPLG T QKKEREYKEAL+ FN
Sbjct: 95  QETKRLSTIREELESMADPMRKEVSVVRKKIDSVNKELKPLGSTVQKKEREYKEALDTFN 154

Query: 133 EKNKEKVQLITKLMEV 148
           EKN+EKVQLITKLME+
Sbjct: 155 EKNREKVQLITKLMEM 170

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592509|gb|AAM64459.1| unknown [Arabidopsis thaliana]

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 102/136 (75%), Positives = 127/136 (93%), Gaps = 3/136 (2%)

Query: 13  NQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVE 72
           N+++L   +G+LSFSS ++S++DEEM+RSAL+ FRAKE+EIEK+++EVRE++QA LGRVE
Sbjct: 38  NEMVLH--TGSLSFSS-HMSREDEEMTRSALSAFRAKEDEIEKRRMEVRERIQAQLGRVE 94

Query: 73  EETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFN 132
           +ETKRL+TIREELE++ADPMRKEV+VVRKKIDSVNKELKPLG T QKKEREYKEAL+ FN
Sbjct: 95  QETKRLSTIREELESMADPMRKEVSVVRKKIDSVNKELKPLGSTVQKKEREYKEALDXFN 154

Query: 133 EKNKEKVQLITKLMEV 148
           EKN+EKVQLITKLME+
Sbjct: 155 EKNREKVQLITKLMEM 170

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
TAIR|locus:2100083	178	AT3G09980 "AT3G09980" [Arabido	0.682	0.735	0.702	7.5e-41
TAIR|locus:2044883	195	AT2G36410 [Arabidopsis thalian	0.604	0.594	0.715	2.6e-38
TAIR|locus:2085231	180	AT3G52920 [Arabidopsis thalian	0.604	0.644	0.715	4.9e-37
TAIR|locus:2144618	173	AT5G03660 "AT5G03660" [Arabido	0.682	0.757	0.603	6.5e-35
TAIR|locus:2041985	174	AT2G27740 "AT2G27740" [Arabido	0.671	0.741	0.511	1.8e-30
TAIR|locus:2085206	164	AT3G52900 "AT3G52900" [Arabido	0.713	0.835	0.442	1.8e-25
TAIR|locus:1009023152	155	AT2G36355 "AT2G36355" [Arabido	0.557	0.690	0.509	2.6e-22

TAIR|locus:2100083 AT3G09980 "AT3G09980" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 92/131 (70%), Positives = 103/131 (78%)

Query:    33 KDDEEMSRSALTTFRAXXXXXXXXXXXXXXXVQAHLGRVEEETKRLATIREELEALADPM 92
             K+DEEMSR+AL+ FRA               VQA LGRVEEETKRLA IREELE LADPM
Sbjct:    40 KEDEEMSRTALSAFRAKEEEIEKKKMEIRERVQAQLGRVEEETKRLALIREELEGLADPM 99

Query:    93 RKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVKY 152
             RKEVA+VRKKIDSVNKELKPLGHT QKKEREYKEALEAFNEKN+EKVQLIT+LME+  + 
Sbjct:   100 RKEVAMVRKKIDSVNKELKPLGHTVQKKEREYKEALEAFNEKNREKVQLITRLMELVGES 159

Query:   153 FSCSDRKMQEL 163
                  +K++EL
Sbjct:   160 EKMRMKKLEEL 170

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2044883 AT2G36410 [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 83/116 (71%), Positives = 96/116 (82%)

Query:    33 KDDEEMSRSALTTFRAXXXXXXXXXXXXXXXVQAHLGRVEEETKRLATIREELEALADPM 92
             ++DEEM+RSAL+ FRA               +QA LGRVE+ETKRL+TIREELE++ADPM
Sbjct:    55 REDEEMTRSALSAFRAKEDEIEKRRMEVRERIQAQLGRVEQETKRLSTIREELESMADPM 114

Query:    93 RKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEV 148
             RKEV+VVRKKIDSVNKELKPLG T QKKEREYKEAL+ FNEKN+EKVQLITKLME+
Sbjct:   115 RKEVSVVRKKIDSVNKELKPLGSTVQKKEREYKEALDTFNEKNREKVQLITKLMEM 170

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

TAIR|locus:2085231 AT3G52920 [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 83/116 (71%), Positives = 93/116 (80%)

Query:    33 KDDEEMSRSALTTFRAXXXXXXXXXXXXXXXVQAHLGRVEEETKRLATIREELEALADPM 92
             K+DEEM+RSAL+ FRA               V+A LGRVEEET+RLA+IREELE +ADPM
Sbjct:    26 KEDEEMARSALSAFRAKEDEIEKRKMEVRERVKAQLGRVEEETRRLASIREELETMADPM 85

Query:    93 RKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEV 148
             RKEV  VRKKIDSVNKELKPLG T QKKEREYKEAL+ FNEKN+EKVQLITKLME+
Sbjct:    86 RKEVNWVRKKIDSVNKELKPLGSTVQKKEREYKEALDTFNEKNREKVQLITKLMEM 141

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2144618 AT5G03660 "AT5G03660" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 79/131 (60%), Positives = 97/131 (74%)

Query:    33 KDDEEMSRSALTTFRAXXXXXXXXXXXXXXXVQAHLGRVEEETKRLATIREELEALADPM 92
             K+D+E+S  AL+ F+A               VQA LGRVE+E+KRLA IREELE  ADPM
Sbjct:    34 KEDDELSMKALSAFKAKEEEIEKKKMEIRERVQAQLGRVEDESKRLAMIREELEGFADPM 93

Query:    93 RKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVKY 152
             RKEV +VRKKIDS++KELKPLG+T QKKE EYK+ALEAFNEKNKEKV+LITKL E+  + 
Sbjct:    94 RKEVTMVRKKIDSLDKELKPLGNTVQKKETEYKDALEAFNEKNKEKVELITKLQELEGES 153

Query:   153 FSCSDRKMQEL 163
                  +K++EL
Sbjct:   154 EKFRFKKLEEL 164

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2041985 AT2G27740 "AT2G27740" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 66/129 (51%), Positives = 90/129 (69%)

Query:    35 DEEMSRSALTTFRAXXXXXXXXXXXXXXXVQAHLGRVEEETKRLATIREELEALADPMRK 94
             +EE+S+SA   F+A               VQ  LG  EE T+RLA IREELEAL DPMRK
Sbjct:    37 EEELSQSAFALFKAKEDEIERRKMEVKDRVQKKLGLAEEATRRLAEIREELEALTDPMRK 96

Query:    95 EVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVKYFS 154
             E++ +RK++D++N+ELKPLG +CQ+KERE+KEALEA+NEKNKEK   ++KL+E+  +   
Sbjct:    97 EISAIRKRVDAINRELKPLGQSCQRKEREFKEALEAYNEKNKEKAIFVSKLVELVTESEK 156

Query:   155 CSDRKMQEL 163
                 K++EL
Sbjct:   157 LRMTKLEEL 165

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2085206 AT3G52900 "AT3G52900" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 61/138 (44%), Positives = 87/138 (63%)

Query:    34 DDEEMSRSALTTFRAXXXXXXXXXXXXXXXVQAHLGRVEEETKRLATIREELEALADPMR 93
             ++EE+ + A+T F+A               VQ  LG  EE T+ L    EELE + DPMR
Sbjct:    27 EEEEIWKVAVTRFQAREEEIERKKMTVKEKVQQRLGFAEEATRCLTQTLEELEIMGDPMR 86

Query:    94 KEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVKYF 153
             KEV +VRKKID  N+++K L  +CQKKE+EYK+ LEAFNEKNKEK  L++ LME+  +  
Sbjct:    87 KEVGMVRKKIDMANRDIKSLAQSCQKKEKEYKDTLEAFNEKNKEKAHLVSMLMELLAESE 146

Query:   154 SCSDRKMQELHFLILGSL 171
                 +K++E++  + G+L
Sbjct:   147 RLRIKKLEEINKTV-GTL 163

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:1009023152 AT2G36355 "AT2G36355" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 55/108 (50%), Positives = 73/108 (67%)

Query:    64 VQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKERE 123
             +Q  LG  EE T+ L    E LE + DPMRKEV +VRKKI+  N+E+K L  +CQKKERE
Sbjct:    48 IQQRLGFAEEATRSLTQTLEGLEIMGDPMRKEVGMVRKKIEMANREIKSLSQSCQKKERE 107

Query:   124 YKEALEAFNEKNKEKVQLITKLMEVSVKYFSCSDRKMQELHFLILGSL 171
             YKE  EAF+EKNKEK  L++ LME+  +      +K++E++  I GSL
Sbjct:   108 YKEIHEAFDEKNKEKAHLVSILMELLAESERVRVKKLEEINKTI-GSL 154


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.127   0.352    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      192       149   0.00078  104 3  11 22  0.48    31
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  590 (63 KB)
  Total size of DFA:  137 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.73u 0.14s 24.87t   Elapsed:  00:00:01
  Total cpu time:  24.73u 0.14s 24.87t   Elapsed:  00:00:01
  Start:  Fri May 10 23:18:19 2013   End:  Fri May 10 23:18:20 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.4__1677__AT2G36410.1 annotation not avaliable (191 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	192
pfam04949	160	pfam04949, Transcrip_act, Transcriptional activato	5e-57
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	6e-04

>gnl|CDD|191136 pfam04949, Transcrip_act, Transcriptional activator

 Score =  176 bits (448), Expect = 5e-57
 Identities = 100/151 (66%), Positives = 127/151 (84%), Gaps = 1/151 (0%)

Query: 14  QLMLQQSSGNLSFS-SSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVE 72
           Q +  + SG++SF  S  + + DEE+SRSAL+ F+AKEEEIE++K+EVRE+VQA LGRVE
Sbjct: 3   QRLRVKHSGSISFGGSPMMDEKDEELSRSALSLFKAKEEEIERRKMEVRERVQAQLGRVE 62

Query: 73  EETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFN 132
           EETKRLA IREELE +ADPMRKEV+++RK+IDSVN+ELKPLG TCQKKE+EYKEALEA+N
Sbjct: 63  EETKRLAEIREELEGMADPMRKEVSMIRKRIDSVNRELKPLGQTCQKKEKEYKEALEAYN 122

Query: 133 EKNKEKVQLITKLMEVSVKYFSCSDRKMQEL 163
           EKNKEK QL+TKLME+  +      +K++EL
Sbjct: 123 EKNKEKAQLVTKLMELVGESEKLRMKKLEEL 153

This family of proteins may act as a transcriptional activator. It plays a role in stress response in plants. Length = 160

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 20/68 (29%), Positives = 29/68 (42%)

Query: 47  RAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSV 106
           RA+    E    E  E         EE + RL T+ E + A+ D +R  +A  R  + S 
Sbjct: 881 RARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASG 940

Query: 107 NKELKPLG 114
            +EL  L 
Sbjct: 941 GRELPRLA 948

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	192
PF04949	159	Transcrip_act: Transcriptional activator; InterPro	100.0
TIGR01837	118	PHA_granule_1 poly(hydroxyalkanoate) granule-assoc	95.0
PF05597	132	Phasin: Poly(hydroxyalcanoate) granule associated	94.42
PF10186	302	Atg14: UV radiation resistance protein and autopha	92.25
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	90.1
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	87.76
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	87.68
PRK03918	880	chromosome segregation protein; Provisional	86.82
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	86.5
PF07200	150	Mod_r: Modifier of rudimentary (Mod(r)) protein; I	84.79
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	80.28
cd07623	224	BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of	80.05

>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []

Probab=100.00  E-value=3.7e-74  Score=467.26  Aligned_cols=152  Identities=70%  Similarity=0.969  Sum_probs=145.5

Q ss_pred             hhccCCcccccCCCCCCcc-hHHhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHH
Q 029490           16 MLQQSSGNLSFSSSNLSKD-DEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRK   94 (192)
Q Consensus        16 ~~~~~sg~~~~~~s~~~~e-eEe~srsAls~F~AKEEEIErkKmEVRekVqaqLGRvEeetkRLa~IreELE~laDPmRK   94 (192)
                      ..++++|+++++++++.++ +++|||||+|+|+|||+|||||||+||+|||+|||||||+|||||+||+|||+|+|||||
T Consensus         5 ~~~~~~~~~~~~g~~~~~~~~e~~s~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~Rk   84 (159)
T PF04949_consen    5 LRVKNSGSISFNGSSMMDDEDEEMSRSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRK   84 (159)
T ss_pred             hhcccCCCCCCCCCcccchhHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHH
Confidence            4557888888877766655 899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhcchhhHHHHHHHH
Q 029490           95 EVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVKYFSCSDRKMQELHFLI  167 (192)
Q Consensus        95 EV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv~ESErlRmkKLEEL~kl~  167 (192)
                      ||++||||||+|||+|||||++|||||+|||+||+||||||+||++||++|||||+||||+|||||||||+-|
T Consensus        85 Ev~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~rmKKLEELsk~i  157 (159)
T PF04949_consen   85 EVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERLRMKKLEELSKEI  157 (159)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999976

This entry represents proteins annotated as RAB6-interacting golgins.

>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein

Probab=95.00  E-value=0.076  Score=40.77  Aligned_cols=62  Identities=23%  Similarity=0.417  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccch
Q 029490           51 EEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLG  114 (192)
Q Consensus        51 EEIErkKmEVRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLg  114 (192)
                      ++++..--+|+++.+.+.+.+|.-..+  .+..=|..|+-|++.||..+++|||.+...|..|.
T Consensus        55 e~~~~~~~~~~~~~~~~~~~le~~~~~--~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~  116 (118)
T TIGR01837        55 EEVKTALEQTRDQVQRNWDKLEKAFDE--RVEQALNRLNIPSREEIEALSAKIEQLAVQVEELR  116 (118)
T ss_pred             HHHhhhHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            445555556667777777777765553  56778999999999999999999999998887664

This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.

>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material

Probab=94.42  E-value=0.16  Score=40.42  Aligned_cols=62  Identities=19%  Similarity=0.445  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccch
Q 029490           51 EEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLG  114 (192)
Q Consensus        51 EEIErkKmEVRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLg  114 (192)
                      ++++..--.|++++..+++++|.--..  .+..-|..|+=|+|+||..++.|||.++++|.-|.
T Consensus        68 ~~~~~~~~~~~~~~~~~~dklE~~fd~--rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~  129 (132)
T PF05597_consen   68 DQVKSRVDDVKERATGQWDKLEQAFDE--RVARALNRLGVPSRKDVEALSARIDQLTAQVERLA  129 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            333444466667777777777754321  23445889999999999999999999999886553

PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=92.25  E-value=5.1  Score=32.24  Aligned_cols=51  Identities=24%  Similarity=0.427  Sum_probs=33.4

Q ss_pred             HHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhH
Q 029490           63 KVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTC  117 (192)
Q Consensus        63 kVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsC  117 (192)
                      .++..-..+++...|++.|+.+++.    .++++..-|++|+.....|......-
T Consensus        57 ~~~~~~~~~~~~~~r~~~l~~~i~~----~~~~i~~~r~~l~~~~~~l~~~~~~l  107 (302)
T PF10186_consen   57 EIQQLKREIEELRERLERLRERIER----LRKRIEQKRERLEELRESLEQRRSRL  107 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445567777788888777765    46777777777777766666555443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=90.10  E-value=6.8  Score=37.12  Aligned_cols=65  Identities=17%  Similarity=0.285  Sum_probs=54.2

Q ss_pred             HHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhcchhh
Q 029490           95 EVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVKYFSCSDRK  159 (192)
Q Consensus        95 EV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv~ESErlRmkK  159 (192)
                      ..+.++++|+.++++|+-+|....+-..+|.++.+-|+...+...+|.+..-.|..--++++-++
T Consensus       952 ~~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~ 1016 (1164)
T TIGR02169       952 SLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKK 1016 (1164)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35788999999999999999988889999999999999999999999887766665555555444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=87.76  E-value=1.5  Score=33.05  Aligned_cols=53  Identities=28%  Similarity=0.488  Sum_probs=39.2

Q ss_pred             HHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhh
Q 029490           62 EKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHT  116 (192)
Q Consensus        62 ekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqs  116 (192)
                      +.+.+--.++..-.+||+.+-.+++.|  |++++|..++..|..++.+++-+...
T Consensus        35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~L--Pt~~dv~~L~l~l~el~G~~~~l~~~   87 (106)
T PF10805_consen   35 EDIEKLEERLDEHDRRLQALETKLEHL--PTRDDVHDLQLELAELRGELKELSAR   87 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            333334445556678999999999988  88999988888888888777655443

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=87.68  E-value=8.4  Score=33.51  Aligned_cols=92  Identities=20%  Similarity=0.287  Sum_probs=66.8

Q ss_pred             HHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHH
Q 029490           59 EVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEK  138 (192)
Q Consensus        59 EVRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEK  138 (192)
                      ++..++.+....++.+..+|...-.|   +++-.+.|+..+|..|..++-+|.-..+.-...+.+...--+..++.+.+|
T Consensus       177 ~~~~~l~~~~~~L~~e~~~Lk~~~~e---~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k  253 (325)
T PF08317_consen  177 ELLPKLRERKAELEEELENLKQLVEE---IESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQK  253 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh---hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666666667776666666555   555566888889999888888888887777777888777777788888888


Q ss_pred             HHHHHHHHHhhhhhh
Q 029490          139 VQLITKLMEVSVKYF  153 (192)
Q Consensus       139 a~LVtkLmELv~ESE  153 (192)
                      .++...+-++=.--+
T Consensus       254 ~~l~~eI~e~~~~~~  268 (325)
T PF08317_consen  254 QELLAEIAEAEKIRE  268 (325)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888777766543333

>PRK03918 chromosome segregation protein; Provisional

Probab=86.82  E-value=19  Score=34.03  Aligned_cols=65  Identities=15%  Similarity=0.210  Sum_probs=35.0

Q ss_pred             HHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhh
Q 029490           84 ELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVS  149 (192)
Q Consensus        84 ELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv  149 (192)
                      .+..+-+|..+.+..+++.++.+..++.-|-..-..-+..++++-+.+++. +++...+..|..+.
T Consensus       297 ~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~e~~~~~~~e~~~~~-~~~~~~~~~l~~~~  361 (880)
T PRK03918        297 KLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKL-KELEKRLEELEERH  361 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            344444577777777777777777766655544444444444444444433 33444444444333

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=86.50  E-value=19  Score=33.88  Aligned_cols=72  Identities=14%  Similarity=0.132  Sum_probs=30.6

Q ss_pred             HHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHh--hhhhhHHHHHHHHHHHhhhh-hhhcchhhHHHHHHHH
Q 029490           96 VAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAF--NEKNKEKVQLITKLMEVSVK-YFSCSDRKMQELHFLI  167 (192)
Q Consensus        96 V~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAf--NEKnkEKa~LVtkLmELv~E-SErlRmkKLEEL~kl~  167 (192)
                      ++.+...+...+.+++-+-.....-+++++.--++.  |.+.........++.+++.+ .+.++-++...|.+.+
T Consensus       437 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~  511 (650)
T TIGR03185       437 LFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKINAFELERAITIADKAKKTLKEFREKLLERKLQQLEEEI  511 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333444443332222  23333344444555555543 2445555566665554

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins

Probab=84.79  E-value=7.2  Score=29.71  Aligned_cols=62  Identities=19%  Similarity=0.221  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhc
Q 029490           93 RKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVKYFSC  155 (192)
Q Consensus        93 RKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv~ESErl  155 (192)
                      ..++...|..|...-.+++.|...|+.|+++|+.+...||.-. -++.|-+..-+.=.+||.+
T Consensus        54 ~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~-l~~~L~~~~~e~eeeSe~l  115 (150)
T PF07200_consen   54 EPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDA-LLARLQAAASEAEEESEEL  115 (150)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH-HHHHHHHHHHHHHHHHHHH
Confidence            4677778888888888999999999999999999999999864 3333444444444444443

The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=80.28  E-value=16  Score=25.59  Aligned_cols=71  Identities=23%  Similarity=0.403  Sum_probs=49.4

Q ss_pred             HHHHHHhhhhHHHhhhHHHHHHHHHhccchh--------------HH-HHHHHHHHhhhhhhccccchhhHhhhHHHHHH
Q 029490           62 EKVQAHLGRVEEETKRLATIREELEALADPM--------------RK-EVAVVRKKIDSVNKELKPLGHTCQKKEREYKE  126 (192)
Q Consensus        62 ekVqaqLGRvEeetkRLa~IreELE~laDPm--------------RK-EV~~VRKkID~vNreLKPLgqsCqKKEkEYKE  126 (192)
                      ..|.++++.++.+-+++....+||+.+.|+.              +. =+..+.++++.+..+++-|-......++++++
T Consensus        15 ~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~   94 (106)
T PF01920_consen   15 QQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKE   94 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3577889999999999999999999998771              12 23456667777777776666665556666655


Q ss_pred             HHHHhh
Q 029490          127 ALEAFN  132 (192)
Q Consensus       127 aLEAfN  132 (192)
                      .=..++
T Consensus        95 ~~~~l~  100 (106)
T PF01920_consen   95 LKKKLY  100 (106)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444433

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2

Probab=80.05  E-value=20  Score=29.65  Aligned_cols=70  Identities=13%  Similarity=0.269  Sum_probs=41.4

Q ss_pred             HHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHH-HHHhhhhhhccccchhhHhhhHHHHHHHHHHh
Q 029490           62 EKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVV-RKKIDSVNKELKPLGHTCQKKEREYKEALEAF  131 (192)
Q Consensus        62 ekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~V-RKkID~vNreLKPLgqsCqKKEkEYKEaLEAf  131 (192)
                      |||...---|.+...+....+.+.+.+++-+++|+... +.|+...+.-|.-...+=-.-.++.-++.|+|
T Consensus       149 ~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~~le~~i~~q~~~~~~We~~  219 (224)
T cd07623         149 DKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKYLESLLNTQQQLIKYWEAF  219 (224)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44444444455556677788888888888888888876 45555555555544444333344444444443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	192
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 30/133 (22%), Positives = 64/133 (48%), Gaps = 2/133 (1%)

Query: 17   LQQSSGNLSFSSSNLSKDDEEMSR--SALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEE 74
            ++     +   ++ L+K+ + +    S LTT  A+EEE  K   +++ K ++ +  +E  
Sbjct: 988  MEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVR 1047

Query: 75   TKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEK 134
             K+    R+ELE +   +  E + + ++I  +  ++  L     KKE E + AL    ++
Sbjct: 1048 LKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDE 1107

Query: 135  NKEKVQLITKLME 147
              +K   + K+ E
Sbjct: 1108 TSQKNNALKKIRE 1120

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 33/193 (17%), Positives = 68/193 (35%), Gaps = 49/193 (25%)

Query: 32  SKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLG----RVEEETKRLATIREELEA 87
           SKD    +     T  +K+EE+ +K +E  E ++ +       ++ E ++ + +      
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQKFVE--EVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 88  LADPMRKEVAVVRK----------KIDSVNKELKP-----------LGHTCQKKEREYKE 126
             D +  +  V  K          K+     EL+P            G T          
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-------- 166

Query: 127 ALEAFNEKNKEKVQLITKLME-----VSVKYFSCSD---RKMQELHFLILGSLSSQSALW 178
           AL+        KVQ     M+     +++K  +  +     +Q+L + I  + +S+S   
Sbjct: 167 ALDVCLS---YKVQ---CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 179 LFYRMNSWWAKAR 191
              ++     +A 
Sbjct: 221 SNIKLRIHSIQAE 233

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 19/114 (16%), Positives = 37/114 (32%)

Query: 34   DDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMR 93
            D++     +L       E     + E        L   EEE K        L+     +R
Sbjct: 938  DEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLR 997

Query: 94   KEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLME 147
            KE+   + +  ++ +      H  ++   E KE       + +E  + I    +
Sbjct: 998  KELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	192
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	91.58
1fio_A	196	SSO1 protein; four helix bundle, alpha helix, memb	86.99
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	81.44

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=91.58  E-value=2.9  Score=35.65  Aligned_cols=17  Identities=12%  Similarity=0.108  Sum_probs=6.4

Q ss_pred             hccchhHHHHHHHHHHh
Q 029490           87 ALADPMRKEVAVVRKKI  103 (192)
Q Consensus        87 ~laDPmRKEV~~VRKkI  103 (192)
                      ...|.+.+....+.+.+
T Consensus       495 ~~~~~~~~~~~~l~~~~  511 (597)
T 3oja_B          495 LPKDGLARSSDNLNKVF  511 (597)
T ss_dssp             CCCCSSSCHHHHHHHHH
T ss_pred             ccccccCCHHHHHHHHH
Confidence            33343333333333333

>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1

Probab=86.99  E-value=5.2  Score=29.98  Aligned_cols=29  Identities=14%  Similarity=0.275  Sum_probs=15.6

Q ss_pred             HHHHHHHhccchhHHHHHHHHHHhhhhhh
Q 029490           80 TIREELEALADPMRKEVAVVRKKIDSVNK  108 (192)
Q Consensus        80 ~IreELE~laDPmRKEV~~VRKkID~vNr  108 (192)
                      .++++|+.+.+-+.+=+..++++|..+..
T Consensus        46 ~~~~~i~~l~~~i~~~~~~~~~~lk~l~~   74 (196)
T 1fio_A           46 HLRHSLDNFVAQATDLQFKLKNEIKSAQR   74 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35555555555555555555555554443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=81.44  E-value=1.5  Score=37.50  Aligned_cols=71  Identities=17%  Similarity=0.133  Sum_probs=31.7

Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Q 029490           78 LATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEV  148 (192)
Q Consensus        78 La~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmEL  148 (192)
                      +....+.++....+.-.+.....+.++.-+.+++-+.+.+.+=|+.+++.-+..-+-++|-+++-.++.+|
T Consensus       507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l  577 (597)
T 3oja_B          507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL  577 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            33333333333444444444455555554555444444444444444444444444444444444444333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	192
d1fioa_	196	Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	86.99
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	85.09

>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.99  E-value=2.9  Score=28.23  Aligned_cols=89  Identities=9%  Similarity=0.173  Sum_probs=46.8

Q ss_pred             hhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 029490           68 LGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLME  147 (192)
Q Consensus        68 LGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmE  147 (192)
                      |-.+.....+|..+...+  ++++...+...++.+|+.+..++.-+.+.|...-+..+..-..-+.+.-....|.+.|.+
T Consensus        18 i~~i~~~i~~L~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~l~~   95 (196)
T d1fioa_          18 LDKYDHTINQVDSLHKRL--LTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNKQAQAENSRQRFLK   95 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHH
Confidence            333333444444444433  234455666667777777777777777777655544443322223333344556666666


Q ss_pred             hhhhhhhcchh
Q 029490          148 VSVKYFSCSDR  158 (192)
Q Consensus       148 Lv~ESErlRmk  158 (192)
                      ++...-..-.+
T Consensus        96 ~~~~f~~~q~~  106 (196)
T d1fioa_          96 LIQDYRIVDSN  106 (196)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66555444333

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.09  E-value=4.8  Score=28.40  Aligned_cols=61  Identities=13%  Similarity=0.222  Sum_probs=36.1

Q ss_pred             HhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHH-HHHHHHHHhhhhhhhcchhhHHH
Q 029490          102 KIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKV-QLITKLMEVSVKYFSCSDRKMQE  162 (192)
Q Consensus       102 kID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa-~LVtkLmELv~ESErlRmkKLEE  162 (192)
                      +++.....+.-..+.|++-+.+|..++.+||.-..+-- .-+..+++-+-+-|..|...+-+
T Consensus       168 ~~~K~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~~q~~e~~r~~~~k~  229 (288)
T d2efla1         168 DVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEERRIVRMGE  229 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444556677888999999999997655431 22334444454445555555544