Citrus Sinensis ID: 029491

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
Protein Sequence
MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQVSIPSIFFPLKNFSKLFLVRI
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHcHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHcHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccHHHccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccEccHHHHHHHEEEEc
Coil and Loop (DISEMBL)
mgrpdlcfdiihqvlpynqqedFIFGILAFSLLELGQMSDAEEAAKKGlkinkhdcwsqhalCHVLQHDCCFKEAVQFMEEcsstwsscssfmythnWWHVALCYLEGHSPMRKVLEIYDNHIWkelekpdavhpeVYLNALGLLLRVYVRGELDVFGNRLKVLADCvadqvsipsiffplknfskLFLVRI
Flexible Loop (DISEMBL)
MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQVsipsiffplknfsklflvri
Low Complexity Region (SEG)
MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEcsstwsscssFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQVSIPSIFFPLKNFSKLFLVRI
Disordered region (IsUnstruct)
*****LCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSD***AAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQVSIPSIFFPLKNFSKLFLV**
Disordered Region (DISOPRED)
******CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQVSIPSIFFPLKNFSKLFLVRI
Disordered Region (DISEMBL)
MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQVSIPSIFFPLKNFSKLFLVRI
Disordered Region (DISPRO)
*GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQVSIPSIFFPLKNFSKLFLVRI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQVSIPSIFFPLKNFSKLFLVRI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	192	2.2.26 [Sep-21-2011]
Q5R3I4	469	Tetratricopeptide repeat	yes	no	0.656	0.268	0.330	2e-12
Q5RFF7	469	Tetratricopeptide repeat	yes	no	0.656	0.268	0.323	8e-12
A2VD82	469	Tetratricopeptide repeat	N/A	no	0.630	0.257	0.314	1e-10
A3KMP2	465	Tetratricopeptide repeat	yes	no	0.567	0.234	0.333	1e-10
Q6DIV2	469	Tetratricopeptide repeat	yes	no	0.630	0.257	0.299	3e-10
A3KPN8	466	Tetratricopeptide repeat	yes	no	0.75	0.309	0.281	5e-09

>sp|Q5R3I4|TTC38_HUMAN Tetratricopeptide repeat protein 38 OS=Homo sapiens GN=TTC38 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 4/130 (3%)

Query: 23  FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82
           ++ GI +F L+E      AE+ AK+ L IN  D WS H + H+ +     K+ ++FM+  
Sbjct: 181 YVKGIYSFGLMETNFYDQAEKLAKEALSINPTDAWSVHTVAHIHEMKAEIKDGLEFMQHS 240

Query: 83  SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNAL 142
            + W   S  +  HN+WH AL YL         L IYD HI   L+  DA+   V  ++ 
Sbjct: 241 ETFWKD-SDMLACHNYWHWAL-YLIEKGEYEAALTIYDTHILPSLQANDAMLDVV--DSC 296

Query: 143 GLLLRVYVRG 152
            +L R+ + G
Sbjct: 297 SMLYRLQMEG 306

Homo sapiens (taxid: 9606)

>sp|Q5RFF7|TTC38_PONAB Tetratricopeptide repeat protein 38 OS=Pongo abelii GN=TTC38 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 4/130 (3%)

Query: 23  FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82
           ++ GI +F L+E      AE+ AK+ L IN  D WS H + H+ +     K+ ++FM+  
Sbjct: 181 YVKGIYSFGLMETNFYDQAEKLAKEALSINPTDAWSVHTVAHIHEMKAEIKDGLEFMQHS 240

Query: 83  SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNAL 142
            + W   S  +  HN+WH AL YL         L IYD HI   L+   A+   V  ++ 
Sbjct: 241 ETLWKD-SDMLACHNYWHWAL-YLIEKGEYEAALTIYDTHILPSLQANGAMLDVV--DSC 296

Query: 143 GLLLRVYVRG 152
            +L R+ + G
Sbjct: 297 SMLYRLQMEG 306

Pongo abelii (taxid: 9601)

>sp|A2VD82|TTC38_XENLA Tetratricopeptide repeat protein 38 OS=Xenopus laevis GN=ttc38 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 6/127 (4%)

Query: 1   MGRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC 56
           +G      D + +VLPY + E     ++ G+ +F LLE      A + AK+ L + + D 
Sbjct: 154 LGEQRQMRDSVARVLPYWKPETPLSSYVKGMYSFGLLETNFYDQALKVAKEALAVERTDS 213

Query: 57  WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVL 116
           WS H + HV +        + FM+E  + W   S  +  H +WH AL YL         L
Sbjct: 214 WSVHTIAHVHEMKADLDSGLSFMQETENNWKG-SDMLACHVYWHWAL-YLIEKGDYEAAL 271

Query: 117 EIYDNHI 123
            +YDNHI
Sbjct: 272 TLYDNHI 278

Xenopus laevis (taxid: 8355)

>sp|A3KMP2|TTC38_MOUSE Tetratricopeptide repeat protein 38 OS=Mus musculus GN=Ttc38 PE=2 SV=2

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 5/114 (4%)

Query: 15  LPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKE 74
           +P N    ++ GI +F L+E      A++ AK+ L I   D WS H + HV +     K+
Sbjct: 172 IPLN---SYVKGIYSFGLMETNFYDQAQKLAKEALSIEPTDAWSVHTVAHVHEMRAEIKD 228

Query: 75  AVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELE 128
            ++FM++    W   S  +  HN+WH AL YL         L IYD+HI   L+
Sbjct: 229 GLEFMQQSEGHWKD-SDMLACHNYWHWAL-YLIEKGDYEAALTIYDSHILPSLQ 280

Mus musculus (taxid: 10090)

>sp|Q6DIV2|TTC38_XENTR Tetratricopeptide repeat protein 38 OS=Xenopus tropicalis GN=ttc38 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 6/127 (4%)

Query: 1   MGRPDLCFDIIHQVLPY----NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC 56
           +G      D + +VLPY         ++ G+ +F LLE      A + AK+ L +++ D 
Sbjct: 154 LGEQRQMRDSVARVLPYWKPGTPLSSYVKGMYSFGLLETNFYDQALKVAKEALAVDQTDS 213

Query: 57  WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVL 116
           WS H + HV +        + FM+E  + W   S  +  H +WH AL ++E        L
Sbjct: 214 WSVHTVAHVHEMRADLDSGLAFMQETENNWKG-SDMLACHVYWHWALYFIE-KGDYEAAL 271

Query: 117 EIYDNHI 123
            +YDNHI
Sbjct: 272 TLYDNHI 278

Xenopus tropicalis (taxid: 8364)

>sp|A3KPN8|TTC38_DANRE Tetratricopeptide repeat protein 38 OS=Danio rerio GN=ttc38 PE=3 SV=1

 Score = 60.8 bits (146), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 16/160 (10%)

Query: 1   MGRPDLCFDIIHQVLP--------YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN 52
           +G      D + +V+P        Y Q    I G+ +F LLE     +AE+ AK+ L + 
Sbjct: 154 LGEQTQMRDSVARVMPHWKPHMPLYRQ----IKGMYSFGLLETRLYDEAEKMAKEALSLT 209

Query: 53  KHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPM 112
             D WS HA+ HV +     ++ + FM      W+ C   +  HN+WH AL ++E     
Sbjct: 210 PEDGWSVHAVAHVHEMKAEVEKGLNFMASTEKNWTVC-DMLACHNYWHWALYHIE-KGNY 267

Query: 113 RKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRG 152
              L+I+D  + +   K  A+   V  ++  LL R+ + G
Sbjct: 268 EAALKIFDEQVSQRCVKSGAMLDIV--DSCSLLYRLELEG 305

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
224100425	472	predicted protein [Populus trichocarpa]	0.901	0.366	0.745	3e-70
357486429	468	Tetratricopeptide repeat protein [Medica	0.901	0.369	0.670	1e-66
357486431	392	Tetratricopeptide repeat protein [Medica	0.901	0.441	0.670	2e-66
225424865	468	PREDICTED: tetratricopeptide repeat prot	0.901	0.369	0.722	3e-65
357486435	221	Tetratricopeptide repeat protein [Medica	0.885	0.769	0.684	4e-64
449434849	469	PREDICTED: tetratricopeptide repeat prot	0.901	0.368	0.653	5e-64
356500732	468	PREDICTED: tetratricopeptide repeat prot	0.885	0.363	0.660	1e-62
13605637	468	At1g27150/T7N9_21 [Arabidopsis thaliana]	0.901	0.369	0.658	4e-62
18396209	468	StaR-like protein domain-containing prot	0.901	0.369	0.658	5e-62
21537367	468	unknown [Arabidopsis thaliana]	0.901	0.369	0.653	1e-60

>gi|224100425|ref|XP_002311871.1| predicted protein [Populus trichocarpa] gi|222851691|gb|EEE89238.1| predicted protein [Populus trichocarpa]

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 129/173 (74%), Positives = 152/173 (87%)

Query: 1   MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
           MGRPDL  D++ QVLP NQ+ED+I+G+LAFSLLELG+M+DAEEAA+KG +INK D W+QH
Sbjct: 138 MGRPDLSLDLVQQVLPRNQEEDYIYGMLAFSLLELGRMADAEEAARKGYEINKQDYWAQH 197

Query: 61  ALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120
           A+CHVLQ+ C FK+AV FMEECSS+WSSC SFM THNWWHVALCYLEGH+P+RKVLE+YD
Sbjct: 198 AMCHVLQYQCRFKDAVDFMEECSSSWSSCLSFMLTHNWWHVALCYLEGHAPVRKVLEVYD 257

Query: 121 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQVS 173
            HIWKELEK DAV PEVYLNALGLLLRVY+RGELD+F +RL  LA C+ DQ +
Sbjct: 258 QHIWKELEKADAVPPEVYLNALGLLLRVYLRGELDIFDDRLNTLASCITDQAN 310

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486429|ref|XP_003613502.1| Tetratricopeptide repeat protein [Medicago truncatula] gi|355514837|gb|AES96460.1| Tetratricopeptide repeat protein [Medicago truncatula]

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 116/173 (67%), Positives = 146/173 (84%)

Query: 1   MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
           MGRPDL   +++QVLP N+ E+FI+G+LAF LLELGQM +AEEAAK+G +IN  D WSQH
Sbjct: 137 MGRPDLSLSLVNQVLPQNEGENFIYGMLAFPLLELGQMKEAEEAAKRGFEINNQDGWSQH 196

Query: 61  ALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120
           A CHVLQ++C F+EAV+FMEECS +W+S  SFM THNWWHVALCYLEG++PM++VLE+YD
Sbjct: 197 ATCHVLQYECRFREAVEFMEECSPSWNSFLSFMLTHNWWHVALCYLEGNAPMQRVLEVYD 256

Query: 121 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQVS 173
           N+IWKEL+K DA   EVYLNA+ LLLR+ VR EL+ FG+RLK+LAD +ADQ +
Sbjct: 257 NYIWKELDKTDATVAEVYLNAVALLLRLCVRDELEFFGDRLKMLADRLADQAN 309

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486431|ref|XP_003613503.1| Tetratricopeptide repeat protein [Medicago truncatula] gi|355514838|gb|AES96461.1| Tetratricopeptide repeat protein [Medicago truncatula]

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 116/173 (67%), Positives = 146/173 (84%)

Query: 1   MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
           MGRPDL   +++QVLP N+ E+FI+G+LAF LLELGQM +AEEAAK+G +IN  D WSQH
Sbjct: 137 MGRPDLSLSLVNQVLPQNEGENFIYGMLAFPLLELGQMKEAEEAAKRGFEINNQDGWSQH 196

Query: 61  ALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120
           A CHVLQ++C F+EAV+FMEECS +W+S  SFM THNWWHVALCYLEG++PM++VLE+YD
Sbjct: 197 ATCHVLQYECRFREAVEFMEECSPSWNSFLSFMLTHNWWHVALCYLEGNAPMQRVLEVYD 256

Query: 121 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQVS 173
           N+IWKEL+K DA   EVYLNA+ LLLR+ VR EL+ FG+RLK+LAD +ADQ +
Sbjct: 257 NYIWKELDKTDATVAEVYLNAVALLLRLCVRDELEFFGDRLKMLADRLADQAN 309

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424865|ref|XP_002274190.1| PREDICTED: tetratricopeptide repeat protein 38 [Vitis vinifera] gi|296086448|emb|CBI32037.3| unnamed protein product [Vitis vinifera]

 Score =  253 bits (646), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 125/173 (72%), Positives = 147/173 (84%)

Query: 1   MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
           MGRPDL F+++ QVL  NQ E++I+G+LAFSLLE GQM DAE+AAK+G +INK DCWSQH
Sbjct: 137 MGRPDLSFNLVQQVLHENQNENYIYGMLAFSLLECGQMVDAEKAAKRGFEINKQDCWSQH 196

Query: 61  ALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120
           ALCHVLQ++C FKEAV+FMEECSS+WS CSSFM THNWWHV+LCYLEGHS +RKVLE+YD
Sbjct: 197 ALCHVLQYECRFKEAVEFMEECSSSWSLCSSFMLTHNWWHVSLCYLEGHSSIRKVLEVYD 256

Query: 121 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQVS 173
           N+IWKELE+PDA   EVYLNALGLLLRVYVRG   VF +RLK L   + DQ +
Sbjct: 257 NYIWKELERPDAASAEVYLNALGLLLRVYVRGHAVVFEDRLKTLVSRLTDQST 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486435|ref|XP_003613505.1| Tetratricopeptide repeat protein [Medicago truncatula] gi|355514840|gb|AES96463.1| Tetratricopeptide repeat protein [Medicago truncatula]

 Score =  249 bits (636), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 117/171 (68%), Positives = 144/171 (84%), Gaps = 1/171 (0%)

Query: 6   LCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHV 65
           LCF +  QVLP N+ E+FI+G+LAF LLELGQM +AEEAAK+G +IN  D WSQHA CHV
Sbjct: 51  LCFRV-SQVLPQNEGENFIYGMLAFPLLELGQMKEAEEAAKRGFEINNQDGWSQHATCHV 109

Query: 66  LQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125
           LQ++C F+EAV+FMEECS +W+S  SFM THNWWHVALCYLEG++PM++VLE+YDN+IWK
Sbjct: 110 LQYECRFREAVEFMEECSPSWNSFLSFMLTHNWWHVALCYLEGNAPMQRVLEVYDNYIWK 169

Query: 126 ELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQVSIPS 176
           EL+K DA  PEVYLNA+ LLLR+ VR EL+ FG+RLK+LAD +ADQVS  S
Sbjct: 170 ELDKTDATVPEVYLNAVALLLRLCVRDELEFFGDRLKMLADRLADQVSYDS 220

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434849|ref|XP_004135208.1| PREDICTED: tetratricopeptide repeat protein 38-like [Cucumis sativus] gi|449478487|ref|XP_004155331.1| PREDICTED: tetratricopeptide repeat protein 38-like [Cucumis sativus]

 Score =  249 bits (635), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 113/173 (65%), Positives = 140/173 (80%)

Query: 1   MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
           +G  DL   ++ QVLP NQ+E FI+G+LAF LLELG M +AE+AA++GL INK D W+QH
Sbjct: 137 LGSADLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKAARRGLDINKKDGWAQH 196

Query: 61  ALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120
           ALCHVLQ+ C FKEAV+FME CS +W  C SFM THNWWHVALCYLE +SP+ K+LEIYD
Sbjct: 197 ALCHVLQYRCHFKEAVEFMETCSPSWHDCVSFMVTHNWWHVALCYLEANSPLSKILEIYD 256

Query: 121 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQVS 173
           N+IWKELEKPDA+ PEVYLNALGL+LR++VRGE D    RLK+LA+ + D+ +
Sbjct: 257 NYIWKELEKPDAIGPEVYLNALGLMLRLFVRGEYDPCEGRLKILANVLTDKAN 309

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500732|ref|XP_003519185.1| PREDICTED: tetratricopeptide repeat protein 38-like [Glycine max]

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 113/171 (66%), Positives = 146/171 (85%), Gaps = 1/171 (0%)

Query: 1   MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
           MG P L   +I +VLP+N+ E+FI+G+LAF LLELG+M +AE+AAK+G +INK D W+QH
Sbjct: 138 MGLPGLSLSLIQKVLPHNEGENFIYGMLAFPLLELGRMEEAEKAAKRGFEINKQDSWAQH 197

Query: 61  ALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120
           ALCHVLQ+ CCF+EAV+FMEECSS+    SSFM THNWWHVALCYLEG++P ++VLEIYD
Sbjct: 198 ALCHVLQYKCCFREAVKFMEECSSS-WGSSSFMLTHNWWHVALCYLEGNAPRQRVLEIYD 256

Query: 121 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQ 171
           N+IWKEL++ D++  EVYLNA GLLLR+YVRGELD+ G+RLK+LA+C+ +Q
Sbjct: 257 NYIWKELDRNDSMSAEVYLNAAGLLLRLYVRGELDIIGDRLKMLAECLTNQ 307

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13605637|gb|AAK32812.1|AF361799_1 At1g27150/T7N9_21 [Arabidopsis thaliana] gi|27363406|gb|AAO11622.1| At1g27150/T7N9_21 [Arabidopsis thaliana]

 Score =  242 bits (618), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 114/173 (65%), Positives = 136/173 (78%)

Query: 1   MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
           MG+PD    ++ QVLP NQ+E +I G+LAF LLELG+M +A  A++KG +INK D W+ H
Sbjct: 137 MGQPDPFLGLVQQVLPANQEESYIHGLLAFPLLELGRMEEAAAASRKGYEINKEDAWAHH 196

Query: 61  ALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120
            LCHVLQH+C FKEAV+FME  + TW SCSSFMYTHNWWHVALCYLEG SPM KV EIYD
Sbjct: 197 CLCHVLQHECRFKEAVEFMEALAGTWPSCSSFMYTHNWWHVALCYLEGGSPMSKVEEIYD 256

Query: 121 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQVS 173
           +HIWKELEK DAV PEVYLNALGLL+R+ VR  LD F +RLK LA  + +Q +
Sbjct: 257 HHIWKELEKDDAVPPEVYLNALGLLIRLDVRDALDGFEDRLKNLAVRLTNQAN 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396209|ref|NP_564271.1| StaR-like protein domain-containing protein [Arabidopsis thaliana] gi|8778861|gb|AAF79860.1|AC000348_13 T7N9.21 [Arabidopsis thaliana] gi|332192666|gb|AEE30787.1| StaR-like protein domain-containing protein [Arabidopsis thaliana]

 Score =  242 bits (618), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 114/173 (65%), Positives = 136/173 (78%)

Query: 1   MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
           MG+PD    ++ QVLP NQ+E +I G+LAF LLELG+M +A  A++KG +INK D W+ H
Sbjct: 137 MGQPDPFLGLVQQVLPANQEESYIHGLLAFPLLELGRMEEAAAASRKGYEINKEDAWAHH 196

Query: 61  ALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120
            LCHVLQH+C FKEAV+FME  + TW SCSSFMYTHNWWHVALCYLEG SPM KV EIYD
Sbjct: 197 CLCHVLQHECRFKEAVEFMEALAGTWPSCSSFMYTHNWWHVALCYLEGGSPMSKVEEIYD 256

Query: 121 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQVS 173
           +HIWKELEK DAV PEVYLNALGLL+R+ VR  LD F +RLK LA  + +Q +
Sbjct: 257 HHIWKELEKDDAVPPEVYLNALGLLIRLDVRDALDGFEDRLKNLAVRLTNQAN 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537367|gb|AAM61708.1| unknown [Arabidopsis thaliana]

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 113/173 (65%), Positives = 135/173 (78%)

Query: 1   MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
           MG+PD    ++ QVLP NQ+E +I G+LAF LLELG+M +A  A++KG +INK D W+ H
Sbjct: 137 MGQPDPFLGLVQQVLPANQEESYIHGLLAFPLLELGRMEEAAAASRKGYEINKEDAWAHH 196

Query: 61  ALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120
            LCHVLQH+C FKEAV+FME  + TW SCSSFMYTHNW HVALCYLEG SPM KV EIYD
Sbjct: 197 CLCHVLQHECRFKEAVEFMEALAGTWPSCSSFMYTHNWRHVALCYLEGGSPMSKVEEIYD 256

Query: 121 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQVS 173
           +HIWKELEK DAV PEVYLNALGLL+R+ VR  LD F +RLK LA  + +Q +
Sbjct: 257 HHIWKELEKDDAVPPEVYLNALGLLIRLDVRDALDGFEDRLKNLAVRLTNQAN 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
TAIR|locus:2205809	468	AT1G27150 [Arabidopsis thalian	0.901	0.369	0.624	1.8e-55
TAIR|locus:2205764	483	AT1G27110 "AT1G27110" [Arabido	0.890	0.354	0.534	6.9e-47
UNIPROTKB|Q0C3E4	438	HNE_1027 "Putative uncharacter	0.786	0.344	0.335	6.5e-15
WB|WBGene00013216	467	Y54G11A.7 [Caenorhabditis eleg	0.656	0.269	0.323	4.2e-13
MGI|MGI:2146198	465	Ttc38 "tetratricopeptide repea	0.682	0.281	0.289	1.3e-10
UNIPROTKB|Q5LPG1	456	SPO2887 "Uncharacterized prote	0.812	0.342	0.286	1.9e-09
TIGR_CMR|SPO_2887	456	SPO_2887 "conserved hypothetic	0.812	0.342	0.286	1.9e-09
ZFIN|ZDB-GENE-050522-318	466	ttc38 "tetratricopeptide repea	0.744	0.306	0.281	1.5e-08

TAIR|locus:2205809 AT1G27150 [Arabidopsis thaliana (taxid:3702)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 108/173 (62%), Positives = 129/173 (74%)

Query:     1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
             MG+PD    ++ QVLP NQ+E +I G+LAF LLELG+M +A  A++KG +INK D W+ H
Sbjct:   137 MGQPDPFLGLVQQVLPANQEESYIHGLLAFPLLELGRMEEAAAASRKGYEINKEDAWAHH 196

Query:    61 ALCHVLQHDCCFKEAVQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120
              LCHVLQH+C FKEAV+FME           FMYTHNWWHVALCYLEG SPM KV EIYD
Sbjct:   197 CLCHVLQHECRFKEAVEFMEALAGTWPSCSSFMYTHNWWHVALCYLEGGSPMSKVEEIYD 256

Query:   121 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQVS 173
             +HIWKELEK DAV PEVYLNALGLL+R+ VR  LD F +RLK LA  + +Q +
Sbjct:   257 HHIWKELEKDDAVPPEVYLNALGLLIRLDVRDALDGFEDRLKNLAVRLTNQAN 309

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2205764 AT1G27110 "AT1G27110" [Arabidopsis thaliana (taxid:3702)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 92/172 (53%), Positives = 125/172 (72%)

Query:     1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
             MGR DL   +  ++LP N+ + ++ G+LAF L+ELG + +AEEAA+KG +IN++D W+ H
Sbjct:   148 MGRHDLSLPLFRKILPQNEGQVYVNGMLAFCLIELGHLREAEEAARKGCEINENDSWAHH 207

Query:    61 ALCHVLQHDCCFKEAVQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120
             ALCHVLQ +C FKEAV+FMEE            ++HNWWHVA+CYLEG S + KV E+YD
Sbjct:   208 ALCHVLQTECRFKEAVKFMEEHSDSWDSCSSLRFSHNWWHVAVCYLEGGSHISKVEEVYD 267

Query:   121 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDV-FGNRLKVLADCVADQ 171
             + +WKELEK DAV  +VY +ALGLLLR+  RG+LD  F +RL+ LAD + D+
Sbjct:   268 HQMWKELEKDDAVARDVYTDALGLLLRLDTRGKLDDGFQDRLEKLADSLTDK 319

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q0C3E4 HNE_1027 "Putative uncharacterized protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 196 (74.1 bits), Expect = 6.5e-15, P = 6.5e-15
 Identities = 54/161 (33%), Positives = 84/161 (52%)

Query:     9 DIIHQVLP-YNQ--QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHV 65
             D I + LP +++  +  F+ G+LAF L E G    AE A ++ L+    D W+ HA+ HV
Sbjct:   144 DRIARALPAWDKLPERSFLLGMLAFGLEEAGDYPRAEAAGREALEREPTDSWAHHAVVHV 203

Query:    66 LQHDCCFKEAVQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125
             L+     +E   F+            F+  HNWWH+ALC+LE        L++YD+ I +
Sbjct:   204 LEMQGRAEEGRDFIRRRREHWAQPDSFLKIHNWWHLALCHLE-LGEFEAALQLYDDEI-R 261

Query:   126 ELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLAD 166
               E   A++     +A  LL R++V G +D+ G R + LAD
Sbjct:   262 AGESGIAMN---LADAAALLWRLHVIG-VDL-GERWEELAD 297

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

WB|WBGene00013216 Y54G11A.7 [Caenorhabditis elegans (taxid:6239)]

 Score = 180 (68.4 bits), Expect = 4.2e-13, P = 4.2e-13
 Identities = 42/130 (32%), Positives = 68/130 (52%)

Query:    23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEX 82
             ++ G+ AF L E G   DAE  A + L++N+ DCW+ HA  HVL+ +   KE  +FM + 
Sbjct:   181 YLHGMYAFGLEECGIYDDAETQADRALQLNRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 240

Query:    83 XXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNAL 142
                       + +HN+WH AL ++E ++     L I+D  I     K +++   V  +A 
Sbjct:   241 EDDWRQGW-MLASHNYWHTALFHIE-YAEYESALGIFDREIANRFNKTNSLLDMV--DAS 296

Query:   143 GLLLRVYVRG 152
              LL R+ + G
Sbjct:   297 SLLWRLELEG 306

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

MGI|MGI:2146198 Ttc38 "tetratricopeptide repeat domain 38" [Mus musculus (taxid:10090)]

 Score = 157 (60.3 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 40/138 (28%), Positives = 65/138 (47%)

Query:    15 LPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKE 74
             +P N    ++ GI +F L+E      A++ AK+ L I   D WS H + HV +     K+
Sbjct:   172 IPLNS---YVKGIYSFGLMETNFYDQAQKLAKEALSIEPTDAWSVHTVAHVHEMRAEIKD 228

Query:    75 AVQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVH 134
              ++FM++           +  HN+WH AL YL         L IYD+HI   L+    + 
Sbjct:   229 GLEFMQQSEGHWKDSD-MLACHNYWHWAL-YLIEKGDYEAALTIYDSHILPSLQASGTML 286

Query:   135 PEVYLNALGLLLRVYVRG 152
               V  ++  +L R+ + G
Sbjct:   287 DVV--DSCSMLYRLQMEG 302

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LPG1 SPO2887 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 146 (56.5 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 47/164 (28%), Positives = 79/164 (48%)

Query:    16 PYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEA 75
             P +    ++ G  AF+L E G    AE A ++ L +   D W  HA+ HV +     +  
Sbjct:   157 PDHAGRGYLLGCHAFALEETGAYDKAEIAGRQALWMVSDDAWGLHAVAHVHEMKGQSELG 216

Query:    76 VQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHP 135
             + ++            F Y H WWH AL +L+    + +V ++YD+ I K+  K D  + 
Sbjct:   217 LDWLAGREAAWSHCNNFRY-HVWWHKALMHLD-QGQIDQVFDLYDSAIRKD--KTDD-YR 271

Query:   136 EVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQVSIPSIFF 179
             ++  NA  LL R+ + G ++V G+R + LAD  A +     + F
Sbjct:   272 DIS-NATSLLSRLELEG-VNV-GDRWEELADLSAARTEDGCLIF 312

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_2887 SPO_2887 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 146 (56.5 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 47/164 (28%), Positives = 79/164 (48%)

Query:    16 PYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEA 75
             P +    ++ G  AF+L E G    AE A ++ L +   D W  HA+ HV +     +  
Sbjct:   157 PDHAGRGYLLGCHAFALEETGAYDKAEIAGRQALWMVSDDAWGLHAVAHVHEMKGQSELG 216

Query:    76 VQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHP 135
             + ++            F Y H WWH AL +L+    + +V ++YD+ I K+  K D  + 
Sbjct:   217 LDWLAGREAAWSHCNNFRY-HVWWHKALMHLD-QGQIDQVFDLYDSAIRKD--KTDD-YR 271

Query:   136 EVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQVSIPSIFF 179
             ++  NA  LL R+ + G ++V G+R + LAD  A +     + F
Sbjct:   272 DIS-NATSLLSRLELEG-VNV-GDRWEELADLSAARTEDGCLIF 312

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-050522-318 ttc38 "tetratricopeptide repeat domain 38" [Danio rerio (taxid:7955)]

 Score = 138 (53.6 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 42/149 (28%), Positives = 70/149 (46%)

Query:    16 PYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEA 75
             P+     +I G+ +F LLE     +AE+ AK+ L +   D WS HA+ HV +      + 
Sbjct:   173 PHMPLYSYIKGMYSFGLLETRLYDEAEKMAKEALSLTPEDGWSVHAVAHVHEMKAEVDKG 232

Query:    76 VQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHP 135
             + FM             +  HN+WH AL ++E  +     L+I+D  + +   K  A+  
Sbjct:   233 LNFMASTEKNWMVCD-MLACHNYWHWALYHIEKGN-YEAALKIFDEQVSQRCVKSGAMLD 290

Query:   136 EVYLNALGLLLRVYVRGELDVFGNRLKVL 164
              V  ++  LL R+ + G + V G R + L
Sbjct:   291 IV--DSCSLLYRLELEG-VSV-GERYREL 315


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.142   0.466    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      192       182   0.00098  109 3  11 22  0.49    31
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  186 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.78u 0.22s 17.00t   Elapsed:  00:00:01
  Total cpu time:  16.78u 0.22s 17.00t   Elapsed:  00:00:01
  Start:  Fri May 10 23:19:24 2013   End:  Fri May 10 23:19:25 2013

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00082006 hypothetical protein (472 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	192
cd05804	355	cd05804, StaR_like, StaR_like; a well-conserved pr	9e-63
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.003

>gnl|CDD|100115 cd05804, StaR_like, StaR_like; a well-conserved protein found in bacteria, plants, and animals

 Score =  197 bits (503), Expect = 9e-63
 Identities = 68/179 (37%), Positives = 89/179 (49%), Gaps = 6/179 (3%)

Query: 1   MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
            G  D    ++    P N    ++ G+LAF L E GQ   AEEAA++ L++N  D W+ H
Sbjct: 93  SGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVH 152

Query: 61  ALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120
           A+ HVL+    FKE + FME    TW  CSS +  HNWWH+AL YLE        L IYD
Sbjct: 153 AVAHVLEMQGRFKEGIAFMESWRDTW-DCSSMLRGHNWWHLALFYLERGDY-EAALAIYD 210

Query: 121 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQVSIPSIFF 179
            HI    E   A      L+A  LL R+ + G     G+R + LAD  A       + F
Sbjct: 211 THIAPSAESDPA---LDLLDAASLLWRLELAGH-VDVGDRWEDLADYAAWHFPDHGLAF 265

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. Length = 355

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)- [FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 15/81 (18%), Positives = 36/81 (44%)

Query: 1  MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
          +G  D   +   + L  +      +  LA +  +LG+  +A E  +K L+++  +  + +
Sbjct: 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYY 72

Query: 61 ALCHVLQHDCCFKEAVQFMEE 81
           L         ++EA++  E+
Sbjct: 73 NLGLAYYKLGKYEEALEAYEK 93

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	192
KOG2610	491	consensus Uncharacterized conserved protein [Funct	99.98
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.88
PRK15359	144	type III secretion system chaperone protein SscB;	99.66
PRK12370	553	invasion protein regulator; Provisional	99.59
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.57
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.56
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.55
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.55
PRK15359	144	type III secretion system chaperone protein SscB;	99.54
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.52
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.51
PRK12370	553	invasion protein regulator; Provisional	99.49
PRK11189	296	lipoprotein NlpI; Provisional	99.47
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.47
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.44
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.43
PRK11189	296	lipoprotein NlpI; Provisional	99.42
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.42
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.41
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.41
KOG1126	638	consensus DNA-binding cell division cycle control	99.38
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.32
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.32
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.31
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.3
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.28
PRK11906	458	transcriptional regulator; Provisional	99.27
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.26
KOG0553	304	consensus TPR repeat-containing protein [General f	99.25
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.25
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.25
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.23
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.22
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.22
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.2
PRK11906	458	transcriptional regulator; Provisional	99.17
PLN02789	320	farnesyltranstransferase	99.17
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.17
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.16
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.16
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.15
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.14
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.13
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.12
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.11
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.11
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.1
KOG0553	304	consensus TPR repeat-containing protein [General f	99.1
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.09
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.08
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.05
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.05
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.03
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.02
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.01
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.0
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.98
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.97
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.97
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.97
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.96
KOG1126	638	consensus DNA-binding cell division cycle control	98.96
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.94
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.94
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.93
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.9
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.89
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.88
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.87
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.86
KOG1125	579	consensus TPR repeat-containing protein [General f	98.85
PLN02789	320	farnesyltranstransferase	98.84
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.81
PF12688	120	TPR_5: Tetratrico peptide repeat	98.81
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.74
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.74
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.7
PRK14574	822	hmsH outer membrane protein; Provisional	98.7
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.69
PF13371	73	TPR_9: Tetratricopeptide repeat	98.68
PRK10803	263	tol-pal system protein YbgF; Provisional	98.67
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.67
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.66
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.65
PRK14574	822	hmsH outer membrane protein; Provisional	98.61
PRK15331	165	chaperone protein SicA; Provisional	98.6
PF12688	120	TPR_5: Tetratrico peptide repeat	98.58
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.57
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.56
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.56
KOG1125	579	consensus TPR repeat-containing protein [General f	98.54
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.5
PF13371	73	TPR_9: Tetratricopeptide repeat	98.5
KOG4555	175	consensus TPR repeat-containing protein [Function	98.5
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.49
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.49
PF13428	44	TPR_14: Tetratricopeptide repeat	98.47
KOG1129	478	consensus TPR repeat-containing protein [General f	98.41
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.41
PRK10803	263	tol-pal system protein YbgF; Provisional	98.4
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.39
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.35
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.34
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.33
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.32
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.31
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.31
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.3
PF13431	34	TPR_17: Tetratricopeptide repeat	98.3
KOG2076	895	consensus RNA polymerase III transcription factor	98.28
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.28
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.26
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.25
KOG2076	895	consensus RNA polymerase III transcription factor	98.22
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.22
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.18
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.18
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.16
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.14
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.14
PRK04841	903	transcriptional regulator MalT; Provisional	98.11
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.09
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.08
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.08
PRK04841	903	transcriptional regulator MalT; Provisional	98.07
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.05
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.04
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.04
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.03
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.01
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.99
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.99
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.96
PRK15331	165	chaperone protein SicA; Provisional	97.95
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.95
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.94
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.92
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.91
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.89
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.89
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.88
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.88
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.87
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.84
PF13512	142	TPR_18: Tetratricopeptide repeat	97.82
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.81
KOG4234	271	consensus TPR repeat-containing protein [General f	97.8
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.79
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.78
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.77
PF13512	142	TPR_18: Tetratricopeptide repeat	97.75
KOG1129	478	consensus TPR repeat-containing protein [General f	97.74
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.73
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.73
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.72
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.72
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.7
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.65
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.63
PF13431	34	TPR_17: Tetratricopeptide repeat	97.63
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.61
KOG2003	840	consensus TPR repeat-containing protein [General f	97.61
KOG4555	175	consensus TPR repeat-containing protein [Function	97.6
PLN03218	1060	maturation of RBCL 1; Provisional	97.57
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.53
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.48
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.46
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.45
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.44
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.4
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.39
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.39
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.38
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.37
PLN03218	1060	maturation of RBCL 1; Provisional	97.35
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.34
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.32
KOG2003	840	consensus TPR repeat-containing protein [General f	97.32
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.24
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.21
PLN03077	857	Protein ECB2; Provisional	97.16
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.15
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.14
PF13428	44	TPR_14: Tetratricopeptide repeat	97.09
PLN03077	857	Protein ECB2; Provisional	97.08
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.05
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.03
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.03
KOG1128	777	consensus Uncharacterized conserved protein, conta	96.99
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.98
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.95
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.92
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.91
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.9
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.86
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.86
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.84
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.84
KOG4234	271	consensus TPR repeat-containing protein [General f	96.8
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.74
PRK10941	269	hypothetical protein; Provisional	96.69
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.65
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.63
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.6
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	96.59
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.58
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.58
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.55
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.54
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.51
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.5
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.39
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.32
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.32
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.29
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.29
PRK10941	269	hypothetical protein; Provisional	96.21
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.15
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.09
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.05
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.98
KOG1915	677	consensus Cell cycle control protein (crooked neck	95.92
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.91
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	95.78
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	95.76
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.66
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.65
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.56
COG2912	269	Uncharacterized conserved protein [Function unknow	95.53
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.5
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.45
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.44
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.42
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.38
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.35
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	95.3
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	95.26
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.2
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.18
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.09
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.82
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.8
KOG1915	677	consensus Cell cycle control protein (crooked neck	94.75
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.71
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	94.7
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.69
COG3898	531	Uncharacterized membrane-bound protein [Function u	94.66
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	93.88
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	93.84
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	93.75
KOG1310	758	consensus WD40 repeat protein [General function pr	93.71
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	93.69
KOG3785	557	consensus Uncharacterized conserved protein [Funct	93.59
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	93.57
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	93.51
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	93.47
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	92.92
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	92.74
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.65
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	92.43
KOG4507	886	consensus Uncharacterized conserved protein, conta	92.39
COG5191	435	Uncharacterized conserved protein, contains HAT (H	91.9
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	91.65
COG2912	269	Uncharacterized conserved protein [Function unknow	91.54
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	91.4
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	91.3
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	90.99
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	90.58
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	90.39
COG3898	531	Uncharacterized membrane-bound protein [Function u	90.31
COG4941	415	Predicted RNA polymerase sigma factor containing a	89.92
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	89.88
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	89.78
KOG4340	459	consensus Uncharacterized conserved protein [Funct	89.44
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	88.69
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	88.64
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	88.33
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	88.26
KOG1941	518	consensus Acetylcholine receptor-associated protei	88.19
KOG2610	491	consensus Uncharacterized conserved protein [Funct	87.29
KOG0529	421	consensus Protein geranylgeranyltransferase type I	86.46
COG4941	415	Predicted RNA polymerase sigma factor containing a	86.38
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	86.06
KOG2300	629	consensus Uncharacterized conserved protein [Funct	85.85
KOG2047	835	consensus mRNA splicing factor [RNA processing and	85.39
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	85.23
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	84.4
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	84.08
KOG3364	149	consensus Membrane protein involved in organellar	83.86
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	83.56
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	83.45
PF12854	34	PPR_1: PPR repeat	82.77
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	82.65
COG3947	361	Response regulator containing CheY-like receiver a	82.63
KOG0529	421	consensus Protein geranylgeranyltransferase type I	82.45
COG3629	280	DnrI DNA-binding transcriptional activator of the	81.97
KOG1586	288	consensus Protein required for fusion of vesicles	81.12
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	81.1
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	80.99
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	80.63

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.98  E-value=1.5e-32  Score=237.31  Aligned_cols=156  Identities=33%  Similarity=0.536  Sum_probs=140.9

Q ss_pred             CCChHHHHHHHHhhcCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYN----QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAV   76 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~----p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai   76 (192)
                      +|+....+..++|++|.|    |.++|++||+||+|+|+|.|++||+.++||+++||+|+||+|+++||++|.||++||.
T Consensus       150 ~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~  229 (491)
T KOG2610|consen  150 NGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGK  229 (491)
T ss_pred             ccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHH
Confidence            588999999999999984    4558999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcCcccc
Q 029491           77 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDV  156 (192)
Q Consensus        77 ~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g~~~~  156 (192)
                      +||.+....|... .++.+||+||.|++|++.+ .|+.|+.+||+.|.++.+         -.|+++++|||++.|+++ 
T Consensus       230 eFM~~ted~Wr~s-~mlasHNyWH~Al~~iE~a-eye~aleIyD~ei~k~l~---------k~Da~a~~~~ld~dgv~~-  297 (491)
T KOG2610|consen  230 EFMYKTEDDWRQS-WMLASHNYWHTALFHIEGA-EYEKALEIYDREIWKRLE---------KDDAVARDVYLDLDGVDL-  297 (491)
T ss_pred             HHHHhcccchhhh-hHHHhhhhHHHHHhhhccc-chhHHHHHHHHHHHHHhh---------ccchhhhhhhhhhhhHHh-
Confidence            9999999999975 4478999999999999987 999999999999999753         357999999999999974 


Q ss_pred             hhchHHHHHHHH
Q 029491          157 FGNRLKVLADCV  168 (192)
Q Consensus       157 ~~~rw~~l~~~~  168 (192)
                      -.++|..|-...
T Consensus       298 ~~d~~~kld~la  309 (491)
T KOG2610|consen  298 RSDLWRKLDKLA  309 (491)
T ss_pred             HHHHHHHHHhhh
Confidence            468888554433

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.88  E-value=1.8e-21  Score=168.19  Aligned_cols=163  Identities=38%  Similarity=0.608  Sum_probs=139.6

Q ss_pred             ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491            3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC   82 (192)
Q Consensus         3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a   82 (192)
                      +...+...+....+..|+++++++++|+++.++|++++|++.++++++++|+++++++.+|+++.++|++++|+.+++++
T Consensus        95 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~  174 (355)
T cd05804          95 MRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESW  174 (355)
T ss_pred             CchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            33444455555557889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcCcccchhchHH
Q 029491           83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLK  162 (192)
Q Consensus        83 ~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g~~~~~~~rw~  162 (192)
                      ++.+|..+. +..|++||+|.+++..| ++++|+++|++.+...  + .+....+.+++++++||+.+.|.. ++.+||+
T Consensus       175 l~~~~~~~~-~~~~~~~~la~~~~~~G-~~~~A~~~~~~~~~~~--~-~~~~~~~~~~~~~~l~~~~~~g~~-~~~~~w~  248 (355)
T cd05804         175 RDTWDCSSM-LRGHNWWHLALFYLERG-DYEAALAIYDTHIAPS--A-ESDPALDLLDAASLLWRLELAGHV-DVGDRWE  248 (355)
T ss_pred             hhccCCCcc-hhHHHHHHHHHHHHHCC-CHHHHHHHHHHHhccc--c-CCChHHHHhhHHHHHHHHHhcCCC-ChHHHHH
Confidence            999987544 46789999999999999 9999999999987663  2 223345556888999999999963 6899999


Q ss_pred             HHHHHHhhc
Q 029491          163 VLADCVADQ  171 (192)
Q Consensus       163 ~l~~~~~~~  171 (192)
                      .+++.....
T Consensus       249 ~~~~~~~~~  257 (355)
T cd05804         249 DLADYAAWH  257 (355)
T ss_pred             HHHHHHHhh
Confidence            999887553

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.66  E-value=2.9e-15  Score=116.29  Aligned_cols=110  Identities=14%  Similarity=0.060  Sum_probs=100.4

Q ss_pred             HHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcc
Q 029491            8 FDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWS   87 (192)
Q Consensus         8 l~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p   87 (192)
                      .+.++++++.+|++   +..+|.++...|++++|.+.+++++.++|+++.++.++|.++..+|++++|+.+|++++.+.|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            35688999999997   345799999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           88 SCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        88 ~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++.     .++++|.++...| ++++|+..|++++...
T Consensus        90 ~~~~-----a~~~lg~~l~~~g-~~~eAi~~~~~Al~~~  122 (144)
T PRK15359         90 SHPE-----PVYQTGVCLKMMG-EPGLAREAFQTAIKMS  122 (144)
T ss_pred             CCcH-----HHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence            8653     4556999999999 9999999999999875

>PRK12370 invasion protein regulator; Provisional

Probab=99.59  E-value=5.6e-14  Score=130.29  Aligned_cols=118  Identities=8%  Similarity=-0.053  Sum_probs=106.0

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |+.++|+..+++++..+|+++.++..+|.++...|++++|++.+++|++++|+++.++..+|.++..+|++++|+..+++
T Consensus       318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~  397 (553)
T PRK12370        318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE  397 (553)
T ss_pred             hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      +++++|.++.   .+  ++++..++..| ++++|++.+++.+..
T Consensus       398 Al~l~P~~~~---~~--~~~~~~~~~~g-~~eeA~~~~~~~l~~  435 (553)
T PRK12370        398 CLKLDPTRAA---AG--ITKLWITYYHT-GIDDAIRLGDELRSQ  435 (553)
T ss_pred             HHhcCCCChh---hH--HHHHHHHHhcc-CHHHHHHHHHHHHHh
Confidence            9999999642   22  23455566778 899999999998765

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.57  E-value=1.5e-13  Score=112.32  Aligned_cols=119  Identities=12%  Similarity=0.082  Sum_probs=109.0

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHH-HhcCC--HHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVL-QHDCC--FKEAVQF   78 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl-~~~Gr--~~eai~~   78 (192)
                      ++.++++..+++++..+|+++.++.++|.++...|++++|+.++++|++++|+++..+.++|.++ ...|+  .++|+..
T Consensus        53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~  132 (198)
T PRK10370         53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM  132 (198)
T ss_pred             hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999997 56688  5999999


Q ss_pred             HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ++++++..|+++   .  ...++|..+++.| +|++|+..|++.+...
T Consensus       133 l~~al~~dP~~~---~--al~~LA~~~~~~g-~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        133 IDKALALDANEV---T--ALMLLASDAFMQA-DYAQAIELWQKVLDLN  174 (198)
T ss_pred             HHHHHHhCCCCh---h--HHHHHHHHHHHcC-CHHHHHHHHHHHHhhC
Confidence            999999999964   3  3446999999999 9999999999999885

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.56  E-value=1.1e-13  Score=131.55  Aligned_cols=159  Identities=9%  Similarity=-0.047  Sum_probs=131.4

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++++.+.++++++.|++..++..++.+|.+.+++++|+..++++|+.+|+++.+++.+|.++...|+++||++.|+
T Consensus        99 ~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~  178 (694)
T PRK15179         99 AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFE  178 (694)
T ss_pred             cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCCh----HHHHHHHHHHHHhhhcCcccc
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHP----EVYLNALGLLLRVYVRGELDV  156 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~----~~~~da~sLL~Rl~l~g~~~~  156 (192)
                      +++...|+.+   .+..  .+|..+.+.| +.++|...|++++...  .+++--.    .++..-..+|=||+-+|..++
T Consensus       179 ~~~~~~p~~~---~~~~--~~a~~l~~~G-~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (694)
T PRK15179        179 RLSRQHPEFE---NGYV--GWAQSLTRRG-ALWRARDVLQAGLDAI--GDGARKLTRRLVDLNADLAALRRLGVEGDGRD  250 (694)
T ss_pred             HHHhcCCCcH---HHHH--HHHHHHHHcC-CHHHHHHHHHHHHHhh--CcchHHHHHHHHHHHHHHHHHHHcCcccccCC
Confidence            9999777643   3334  4888889999 9999999999999985  2222111    122234567889998887655


Q ss_pred             hhchHHHHHHH
Q 029491          157 FGNRLKVLADC  167 (192)
Q Consensus       157 ~~~rw~~l~~~  167 (192)
                      +.-|--.+-..
T Consensus       251 ~~~~~~~~~~~  261 (694)
T PRK15179        251 VPVSILVLEKM  261 (694)
T ss_pred             CceeeeeHHHH
Confidence            55554333333

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.55  E-value=7.3e-14  Score=137.11  Aligned_cols=119  Identities=13%  Similarity=0.048  Sum_probs=112.9

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      +|++++|+..+++++..+|+ +.++.++|.++.+.|++++|++.++++++++|+++.++.++|.++..+|++++|++.++
T Consensus       589 ~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~  667 (987)
T PRK09782        589 PGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLE  667 (987)
T ss_pred             CCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            49999999999999999997 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++++.|+++     ..++++|.++..+| ++++|++.|++++...
T Consensus       668 ~AL~l~P~~~-----~a~~nLA~al~~lG-d~~eA~~~l~~Al~l~  707 (987)
T PRK09782        668 RAHKGLPDDP-----ALIRQLAYVNQRLD-DMAATQHYARLVIDDI  707 (987)
T ss_pred             HHHHhCCCCH-----HHHHHHHHHHHHCC-CHHHHHHHHHHHHhcC
Confidence            9999999864     36678999999999 9999999999999885

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.55  E-value=7.6e-14  Score=129.00  Aligned_cols=120  Identities=17%  Similarity=0.233  Sum_probs=114.3

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|+.+-|++.++|+++..|..+.++.++|.+|.+.|+..||+.++.+||.++|+.+.+..+||.++.++|.+++|+.+|+
T Consensus       299 qG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~  378 (966)
T KOG4626|consen  299 QGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYL  378 (966)
T ss_pred             cccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHH
Confidence            38889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .++...|.+.   .+|++  +|..+-..| ++++|+..|..+|+..
T Consensus       379 ~al~v~p~~a---aa~nN--La~i~kqqg-nl~~Ai~~YkealrI~  418 (966)
T KOG4626|consen  379 KALEVFPEFA---AAHNN--LASIYKQQG-NLDDAIMCYKEALRIK  418 (966)
T ss_pred             HHHhhChhhh---hhhhh--HHHHHHhcc-cHHHHHHHHHHHHhcC
Confidence            9999998864   67886  999999998 9999999999999884

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.54  E-value=8.2e-14  Score=108.15  Aligned_cols=90  Identities=9%  Similarity=-0.173  Sum_probs=88.0

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      +|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++|++++|+++.+++++|.++..+|++++|+..++
T Consensus        37 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~  116 (144)
T PRK15359         37 EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQ  116 (144)
T ss_pred             cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCC
Q 029491           81 ECSSTWSSCS   90 (192)
Q Consensus        81 ~a~~~~p~~~   90 (192)
                      +++...|+++
T Consensus       117 ~Al~~~p~~~  126 (144)
T PRK15359        117 TAIKMSYADA  126 (144)
T ss_pred             HHHHhCCCCh
Confidence            9999999965

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.52  E-value=2.7e-13  Score=112.66  Aligned_cols=121  Identities=15%  Similarity=0.117  Sum_probs=111.6

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |+...|...+++||+++|++..+|..+|+.++..|+.+-|.+.+|+||.++|++...+.|-|.-++.+|++++|..++++
T Consensus        49 gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~  128 (250)
T COG3063          49 GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFER  128 (250)
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      |+.. |..+.  ....+-++++|.+..| +.+.|...|.+.+...
T Consensus       129 Al~~-P~Y~~--~s~t~eN~G~Cal~~g-q~~~A~~~l~raL~~d  169 (250)
T COG3063         129 ALAD-PAYGE--PSDTLENLGLCALKAG-QFDQAEEYLKRALELD  169 (250)
T ss_pred             HHhC-CCCCC--cchhhhhhHHHHhhcC-CchhHHHHHHHHHHhC
Confidence            9954 55433  2335667999999999 8999999999999885

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.51  E-value=2e-13  Score=126.27  Aligned_cols=158  Identities=16%  Similarity=0.130  Sum_probs=131.1

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      +|..++|...++++++..|+.+.+++++|.++.++|.+++|+.++..||.+.|+.+.|+.++|.++-++|+..+|+..|+
T Consensus       367 ~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~  446 (966)
T KOG4626|consen  367 QGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYT  446 (966)
T ss_pred             hccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHH
Confidence            36678888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcCcccchhch
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR  160 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g~~~~~~~r  160 (192)
                      +|+..+|..   ..+|++  +|..|-+.| +..+|++.|++++-.+  | +.+.     .-++|+-+|+..-.+.|-..|
T Consensus       447 rAI~~nPt~---AeAhsN--Lasi~kDsG-ni~~AI~sY~~aLklk--P-Dfpd-----A~cNllh~lq~vcdw~D~d~~  512 (966)
T KOG4626|consen  447 RAIQINPTF---AEAHSN--LASIYKDSG-NIPEAIQSYRTALKLK--P-DFPD-----AYCNLLHCLQIVCDWTDYDKR  512 (966)
T ss_pred             HHHhcCcHH---HHHHhh--HHHHhhccC-CcHHHHHHHHHHHccC--C-CCch-----hhhHHHHHHHHHhcccchHHH
Confidence            888888774   467775  999999998 8999999999998774  3 3222     368899999998777677888


Q ss_pred             HHHHHHHHhhcc
Q 029491          161 LKVLADCVADQV  172 (192)
Q Consensus       161 w~~l~~~~~~~~  172 (192)
                      ..+|.....++.
T Consensus       513 ~~kl~sivrdql  524 (966)
T KOG4626|consen  513 MKKLVSIVRDQL  524 (966)
T ss_pred             HHHHHHHHHHHH
Confidence            888888877754

>PRK12370 invasion protein regulator; Provisional

Probab=99.49  E-value=4e-13  Score=124.63  Aligned_cols=118  Identities=9%  Similarity=0.081  Sum_probs=106.2

Q ss_pred             ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHH
Q 029491            3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL---------GQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFK   73 (192)
Q Consensus         3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~---------g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~   73 (192)
                      ..++|+..+++++..+|+++.++..+|.++...         +++++|+..+++|++++|+++.++..+|.++..+|+++
T Consensus       276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~  355 (553)
T PRK12370        276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI  355 (553)
T ss_pred             HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence            356899999999999999999999999876533         44899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           74 EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        74 eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +|++.++++++++|+++   ..|  .++|.++...| ++++|+..|++++...
T Consensus       356 ~A~~~~~~Al~l~P~~~---~a~--~~lg~~l~~~G-~~~eAi~~~~~Al~l~  402 (553)
T PRK12370        356 VGSLLFKQANLLSPISA---DIK--YYYGWNLFMAG-QLEEALQTINECLKLD  402 (553)
T ss_pred             HHHHHHHHHHHhCCCCH---HHH--HHHHHHHHHCC-CHHHHHHHHHHHHhcC
Confidence            99999999999999964   344  45999999998 9999999999999885

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.47  E-value=1.5e-12  Score=111.95  Aligned_cols=118  Identities=14%  Similarity=0.076  Sum_probs=103.0

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      +|+..+|+..+.+++..+|+++.++..+|.++...|++++|++.+++|++++|+++.++.++|.++..+|++++|+..++
T Consensus        77 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~  156 (296)
T PRK11189         77 LGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLL  156 (296)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      ++++..|+++.    ...| +.+. ...+ ++++|+..+++.+..
T Consensus       157 ~al~~~P~~~~----~~~~-~~l~-~~~~-~~~~A~~~l~~~~~~  194 (296)
T PRK11189        157 AFYQDDPNDPY----RALW-LYLA-ESKL-DPKQAKENLKQRYEK  194 (296)
T ss_pred             HHHHhCCCCHH----HHHH-HHHH-HccC-CHHHHHHHHHHHHhh
Confidence            99999998641    1333 2222 3345 899999999887654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.47  E-value=2.8e-12  Score=96.46  Aligned_cols=112  Identities=15%  Similarity=0.092  Sum_probs=103.6

Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491            9 DIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS   88 (192)
Q Consensus         9 ~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~   88 (192)
                      ..+++++..+|++..+...+|..+...|++++|.+.+++++.++|+++.++..+|-++..+|++++|+..+++++...|.
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           89 CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        89 ~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ++.     .+.++|.++...| ++++|+..|++.+...
T Consensus        84 ~~~-----~~~~la~~~~~~g-~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        84 DPR-----PYFHAAECLLALG-EPESALKALDLAIEIC  115 (135)
T ss_pred             ChH-----HHHHHHHHHHHcC-CHHHHHHHHHHHHHhc
Confidence            643     3345999999999 9999999999999875

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.44  E-value=2e-12  Score=120.93  Aligned_cols=120  Identities=15%  Similarity=0.216  Sum_probs=107.4

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      +|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++.++|++..++..+|.++..+|++++|+..++
T Consensus       378 ~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~  457 (615)
T TIGR00990       378 LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFR  457 (615)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++...|.++.     .+..+|.++...| ++++|+..|++++...
T Consensus       458 ~al~~~P~~~~-----~~~~lg~~~~~~g-~~~~A~~~~~~Al~l~  497 (615)
T TIGR00990       458 RCKKNFPEAPD-----VYNYYGELLLDQN-KFDEAIEKFDTAIELE  497 (615)
T ss_pred             HHHHhCCCChH-----HHHHHHHHHHHcc-CHHHHHHHHHHHHhcC
Confidence            99999888642     3445899999998 8999999999999874

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.43  E-value=5.8e-12  Score=119.22  Aligned_cols=119  Identities=14%  Similarity=0.112  Sum_probs=95.2

Q ss_pred             CChHH----HHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491            2 GRPDL----CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ   77 (192)
Q Consensus         2 G~~~~----al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~   77 (192)
                      |++++    |+..+++++..+|+++.++.++|.++.+.|++++|+..++++++++|+++.++..+|.++..+|++++|++
T Consensus       260 G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~  339 (656)
T PRK15174        260 GRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASD  339 (656)
T ss_pred             CCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            56654    78888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        78 ~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .++++++..|...   .  ....+|.++...| ++++|++.|++.+...
T Consensus       340 ~l~~al~~~P~~~---~--~~~~~a~al~~~G-~~deA~~~l~~al~~~  382 (656)
T PRK15174        340 EFVQLAREKGVTS---K--WNRYAAAALLQAG-KTSEAESVFEHYIQAR  382 (656)
T ss_pred             HHHHHHHhCccch---H--HHHHHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence            8888888877642   1  2223577777888 8899999998887764

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.42  E-value=4.4e-12  Score=109.08  Aligned_cols=119  Identities=10%  Similarity=0.060  Sum_probs=106.0

Q ss_pred             CChHHHHHHHHhhcC---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491            2 GRPDLCFDIIHQVLP---YNQQ-EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ   77 (192)
Q Consensus         2 G~~~~al~~~~ral~---~~p~-~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~   77 (192)
                      ++.+.++..+.+++.   .+|+ .+..+..+|.++...|++++|+..+++|++++|+++.++.++|.++..+|++++|+.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            345678888888985   4443 478899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        78 ~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .+++++++.|+..   .  .+.++|.++...| ++++|++.|++.+...
T Consensus       120 ~~~~Al~l~P~~~---~--a~~~lg~~l~~~g-~~~eA~~~~~~al~~~  162 (296)
T PRK11189        120 AFDSVLELDPTYN---Y--AYLNRGIALYYGG-RYELAQDDLLAFYQDD  162 (296)
T ss_pred             HHHHHHHhCCCCH---H--HHHHHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence            9999999999853   2  4556999999998 9999999999999874

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.42  E-value=6.9e-12  Score=118.74  Aligned_cols=120  Identities=11%  Similarity=0.104  Sum_probs=111.2

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSD----AEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAV   76 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~e----Ae~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai   76 (192)
                      .|++++|+..+++++...|+++.++.++|.++.+.|++++    |+..++++++++|+++.++.++|.++..+|++++|+
T Consensus       225 ~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~  304 (656)
T PRK15174        225 VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAI  304 (656)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            4889999999999999999999999999999999999996    899999999999999999999999999999999999


Q ss_pred             HHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           77 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        77 ~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ..+++++.+.|+++   ..+  -++|.++...| ++++|++.|++.+...
T Consensus       305 ~~l~~al~l~P~~~---~a~--~~La~~l~~~G-~~~eA~~~l~~al~~~  348 (656)
T PRK15174        305 PLLQQSLATHPDLP---YVR--AMYARALRQVG-QYTAASDEFVQLAREK  348 (656)
T ss_pred             HHHHHHHHhCCCCH---HHH--HHHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence            99999999999864   333  35999999999 9999999999998764

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.41  E-value=9.5e-12  Score=116.36  Aligned_cols=120  Identities=14%  Similarity=0.072  Sum_probs=109.0

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      +|++++|+..+++++..+|+++..+..+|.++.+.|++++|+..++++++++|+++.++..+|.++..+|++++|+..++
T Consensus       344 ~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  423 (615)
T TIGR00990       344 KGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQ  423 (615)
T ss_pred             cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++.+.|++.   ..+  -.+|.++...| ++++|+..|++.+...
T Consensus       424 kal~l~P~~~---~~~--~~la~~~~~~g-~~~eA~~~~~~al~~~  463 (615)
T TIGR00990       424 KSIDLDPDFI---FSH--IQLGVTQYKEG-SIASSMATFRRCKKNF  463 (615)
T ss_pred             HHHHcCccCH---HHH--HHHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence            9999998853   333  35899999998 8999999999998763

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.41  E-value=3e-11  Score=95.42  Aligned_cols=122  Identities=15%  Similarity=0.211  Sum_probs=109.0

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++++..+++++..+|+++.++..+|.++...|++++|++.+++++.++|+++.++.++|.++..+|++++|+..++
T Consensus        44 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  123 (234)
T TIGR02521        44 QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFE  123 (234)
T ss_pred             CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++...+. +.  ....+..+|.++...| ++++|...|++.+...
T Consensus       124 ~~~~~~~~-~~--~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~  165 (234)
T TIGR02521       124 QAIEDPLY-PQ--PARSLENAGLCALKAG-DFDKAEKYLTRALQID  165 (234)
T ss_pred             HHHhcccc-cc--chHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence            99975332 21  2345667899999998 8999999999998774

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.38  E-value=1.5e-12  Score=120.55  Aligned_cols=138  Identities=12%  Similarity=0.160  Sum_probs=122.8

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      ++++.|+..++||+.++|+++|++..+|.-+..+.+||.|...+|.||.++|++-.||.-+|.|+..+++++.|.-++++
T Consensus       435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqk  514 (638)
T KOG1126|consen  435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQK  514 (638)
T ss_pred             hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHh
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhh
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYV  150 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l  150 (192)
                      |+.++|.+ ..+.+|    ++..+-.+| +.|+|+.+|++++..+  + .+  +.-....+++|+-+.=
T Consensus       515 A~~INP~n-svi~~~----~g~~~~~~k-~~d~AL~~~~~A~~ld--~-kn--~l~~~~~~~il~~~~~  572 (638)
T KOG1126|consen  515 AVEINPSN-SVILCH----IGRIQHQLK-RKDKALQLYEKAIHLD--P-KN--PLCKYHRASILFSLGR  572 (638)
T ss_pred             hhcCCccc-hhHHhh----hhHHHHHhh-hhhHHHHHHHHHHhcC--C-CC--chhHHHHHHHHHhhcc
Confidence            99999995 444555    777888888 9999999999999885  3 22  2345677888877653

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.32  E-value=3.3e-11  Score=101.92  Aligned_cols=119  Identities=18%  Similarity=0.179  Sum_probs=100.0

Q ss_pred             CChHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPY--NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM   79 (192)
Q Consensus         2 G~~~~al~~~~ral~~--~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~   79 (192)
                      |+..++.+.++++...  .|+++.++..+|..+...|+.++|++.+++||.++|+|+.+...+++++...|+.+++...+
T Consensus       124 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l  203 (280)
T PF13429_consen  124 GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREAL  203 (280)
T ss_dssp             T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence            6778888888886554  37899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        80 ~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +......|.++.     ++..+|.+++.+| ++++|+.+|++.+...
T Consensus       204 ~~~~~~~~~~~~-----~~~~la~~~~~lg-~~~~Al~~~~~~~~~~  244 (280)
T PF13429_consen  204 KRLLKAAPDDPD-----LWDALAAAYLQLG-RYEEALEYLEKALKLN  244 (280)
T ss_dssp             HHHHHH-HTSCC-----HCHHHHHHHHHHT--HHHHHHHHHHHHHHS
T ss_pred             HHHHHHCcCHHH-----HHHHHHHHhcccc-cccccccccccccccc
Confidence            999988888664     5567999999999 9999999999988763

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.32  E-value=2.1e-10  Score=90.57  Aligned_cols=119  Identities=10%  Similarity=0.061  Sum_probs=108.6

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN--KHDCWSQHALCHVLQHDCCFKEAVQF   78 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~--P~da~A~h~lahvl~~~Gr~~eai~~   78 (192)
                      .|++++++..+++++...|.++.++.++|..+...|++++|+..+++++...  |.....+..+|.++..+|++++|+..
T Consensus        78 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  157 (234)
T TIGR02521        78 LGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY  157 (234)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence            4889999999999999999999999999999999999999999999999865  56778999999999999999999999


Q ss_pred             HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      +++++...|.++   .  .+..+|.++...| ++++|...+++.+..
T Consensus       158 ~~~~~~~~~~~~---~--~~~~la~~~~~~~-~~~~A~~~~~~~~~~  198 (234)
T TIGR02521       158 LTRALQIDPQRP---E--SLLELAELYYLRG-QYKDARAYLERYQQT  198 (234)
T ss_pred             HHHHHHhCcCCh---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence            999999998853   2  3456999999998 999999999998876

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.31  E-value=4.7e-11  Score=113.77  Aligned_cols=114  Identities=7%  Similarity=-0.093  Sum_probs=101.2

Q ss_pred             HHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc
Q 029491            7 CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTW   86 (192)
Q Consensus         7 al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~   86 (192)
                      ++...+-....+|.++.++.++|-++.+.|++++|+...+++++++|++..|+++++.++..+++++||+..++++++..
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~  150 (694)
T PRK15179         71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG  150 (694)
T ss_pred             hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence            33333334445788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           87 SSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        87 p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      |++.   ..|+  ++|.++.+.| +|++|.++|++.+.+.
T Consensus       151 p~~~---~~~~--~~a~~l~~~g-~~~~A~~~y~~~~~~~  184 (694)
T PRK15179        151 SSSA---REIL--LEAKSWDEIG-QSEQADACFERLSRQH  184 (694)
T ss_pred             CCCH---HHHH--HHHHHHHHhc-chHHHHHHHHHHHhcC
Confidence            9964   3444  5999999999 9999999999999863

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.30  E-value=3e-12  Score=108.28  Aligned_cols=119  Identities=18%  Similarity=0.184  Sum_probs=90.2

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|+.++|+..+++++..+|+++.+...+++.+.+.|+++++.+..++.....|+|+..+..+|.++...|+.++|+.+++
T Consensus       159 ~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~  238 (280)
T PF13429_consen  159 LGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLE  238 (280)
T ss_dssp             CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccc
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      ++...+|+++.     ...|+|-++...| +.++|+.++++.+..
T Consensus       239 ~~~~~~p~d~~-----~~~~~a~~l~~~g-~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  239 KALKLNPDDPL-----WLLAYADALEQAG-RKDEALRLRRQALRL  277 (280)
T ss_dssp             HHHHHSTT-HH-----HHHHHHHHHT-------------------
T ss_pred             ccccccccccc-----ccccccccccccc-ccccccccccccccc
Confidence            99999999753     4457999999998 999999999887653

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.28  E-value=1.3e-10  Score=114.39  Aligned_cols=119  Identities=11%  Similarity=0.004  Sum_probs=108.6

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|+.++|...+++++...|++......++..+...|++++|+..+++|++++|+ +.++.++|.++..+|++++|+.+++
T Consensus       555 ~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~  633 (987)
T PRK09782        555 AGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLR  633 (987)
T ss_pred             CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            388999999999999999999888888888888889999999999999999996 9999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++.+.|+++   ..|+  ++|.++...| ++++|++.|++++...
T Consensus       634 ~AL~l~Pd~~---~a~~--nLG~aL~~~G-~~eeAi~~l~~AL~l~  673 (987)
T PRK09782        634 AALELEPNNS---NYQA--ALGYALWDSG-DIAQSREMLERAHKGL  673 (987)
T ss_pred             HHHHhCCCCH---HHHH--HHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence            9999999964   3444  4898899998 9999999999999874

>PRK11906 transcriptional regulator; Provisional

Probab=99.27  E-value=1e-10  Score=105.70  Aligned_cols=117  Identities=12%  Similarity=-0.002  Sum_probs=102.3

Q ss_pred             hHHHHHHHHhhc---CCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCC
Q 029491            4 PDLCFDIIHQVL---PYNQQEDFIFGILAFSLLEL---------GQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC   71 (192)
Q Consensus         4 ~~~al~~~~ral---~~~p~~~~~~~~laf~L~e~---------g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr   71 (192)
                      .++|+..+.|++   +.+|+++.+++++|+++...         ....+|.+++++|++++|+|+.|+..+|+++-..|+
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~  353 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ  353 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence            357888999999   99999999999999987654         245568899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           72 FKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        72 ~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ++.|++++++|..++|+..   ..+..  .|..+...| +.++|.+..++++..+
T Consensus       354 ~~~a~~~f~rA~~L~Pn~A---~~~~~--~~~~~~~~G-~~~~a~~~i~~alrLs  402 (458)
T PRK11906        354 AKVSHILFEQAKIHSTDIA---SLYYY--RALVHFHNE-KIEEARICIDKSLQLE  402 (458)
T ss_pred             hhhHHHHHHHHhhcCCccH---HHHHH--HHHHHHHcC-CHHHHHHHHHHHhccC
Confidence            9999999999999999964   34444  777777788 9999999999988874

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.26  E-value=7.8e-11  Score=104.14  Aligned_cols=95  Identities=14%  Similarity=0.086  Sum_probs=90.1

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |++.+|+..+.+++..+|+++.++..+|.++...|++++|+..+++|+.++|+++.+++.+|.++..+|++++|+..+++
T Consensus        16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~   95 (356)
T PLN03088         16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEK   95 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhccCCCCcchhhhHH
Q 029491           82 CSSTWSSCSSFMYTHNWW   99 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~W   99 (192)
                      ++.+.|+++   ..+.+.
T Consensus        96 al~l~P~~~---~~~~~l  110 (356)
T PLN03088         96 GASLAPGDS---RFTKLI  110 (356)
T ss_pred             HHHhCCCCH---HHHHHH
Confidence            999999965   455553

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.25  E-value=3.6e-11  Score=103.18  Aligned_cols=103  Identities=13%  Similarity=0.064  Sum_probs=92.8

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      +++.+|++.+.+|+.++|.++.++.+.|-++.+.|.|+.|.+-++.||++||+..-++-.||.++.-+|++++|++.|.+
T Consensus        95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykK  174 (304)
T KOG0553|consen   95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKK  174 (304)
T ss_pred             hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHhCC
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLEGH  109 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G  109 (192)
                      ++.+.|++..     +.=||-.+...++
T Consensus       175 aLeldP~Ne~-----~K~nL~~Ae~~l~  197 (304)
T KOG0553|consen  175 ALELDPDNES-----YKSNLKIAEQKLN  197 (304)
T ss_pred             hhccCCCcHH-----HHHHHHHHHHHhc
Confidence            9999999642     2224555554444

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.25  E-value=1.3e-10  Score=91.80  Aligned_cols=102  Identities=14%  Similarity=0.056  Sum_probs=93.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhH
Q 029491           19 QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNW   98 (192)
Q Consensus        19 p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~   98 (192)
                      +++=....-+|.-+.+.|++++|+..++-...++|.++..+.+||-|+..+|++++||..|.++..+.|++|   .  ..
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp---~--~~  106 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP---Q--AP  106 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc---h--HH
Confidence            555566677888999999999999999999999999999999999999999999999999999999999976   3  44


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           99 WHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        99 WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .|+|.+++..| +.+.|.+.|+.+|..-
T Consensus       107 ~~ag~c~L~lG-~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        107 WAAAECYLACD-NVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHHHHHcC-CHHHHHHHHHHHHHHh
Confidence            57999999999 9999999999999884

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.25  E-value=1.4e-10  Score=108.37  Aligned_cols=118  Identities=10%  Similarity=0.035  Sum_probs=98.9

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|+..++...+++++...|+++.++..+|.++...|++++|++.++++++.+|+++.++.+++.++...|+ .+|+..++
T Consensus       749 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~  827 (899)
T TIGR02917       749 SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAE  827 (899)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence            47888888888888888888888888888888888888888888888888888888888888888888888 77888888


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      +++...|+++.     .+-.+|.++...| ++++|+..|++++..
T Consensus       828 ~~~~~~~~~~~-----~~~~~~~~~~~~g-~~~~A~~~~~~a~~~  866 (899)
T TIGR02917       828 KALKLAPNIPA-----ILDTLGWLLVEKG-EADRALPLLRKAVNI  866 (899)
T ss_pred             HHHhhCCCCcH-----HHHHHHHHHHHcC-CHHHHHHHHHHHHhh
Confidence            88888887643     2335788888888 888888888888864

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.23  E-value=4.2e-10  Score=105.09  Aligned_cols=118  Identities=15%  Similarity=0.095  Sum_probs=99.3

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+++++...|++ .....++.++...|++++|++.+++++..+|+++.+...+|.++..+|+.++|+..++
T Consensus       716 ~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  794 (899)
T TIGR02917       716 QKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYR  794 (899)
T ss_pred             CCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            478889999999999988887 5566788888999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++...|+++.     ..-+++..+...| + ++|+..|++.+...
T Consensus       795 ~~~~~~p~~~~-----~~~~l~~~~~~~~-~-~~A~~~~~~~~~~~  833 (899)
T TIGR02917       795 TVVKKAPDNAV-----VLNNLAWLYLELK-D-PRALEYAEKALKLA  833 (899)
T ss_pred             HHHHhCCCCHH-----HHHHHHHHHHhcC-c-HHHHHHHHHHHhhC
Confidence            99988887532     2234788888888 7 88999999888763

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.22  E-value=3.6e-10  Score=112.95  Aligned_cols=120  Identities=7%  Similarity=0.040  Sum_probs=107.7

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHH--------------
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVL--------------   66 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl--------------   66 (192)
                      .|++++|+..+++++..+|+++.++..+|.++...|++++|++.++++++++|+++.++..++.++              
T Consensus       364 ~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~  443 (1157)
T PRK11447        364 ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIAS  443 (1157)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            478999999999999999999999999999999999999999999999999999999887776653              


Q ss_pred             ----------------------------HhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHH
Q 029491           67 ----------------------------QHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEI  118 (192)
Q Consensus        67 ----------------------------~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~  118 (192)
                                                  ..+|++++|+..++++++..|+++   .  ....+|.++...| ++++|+..
T Consensus       444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~---~--~~~~LA~~~~~~G-~~~~A~~~  517 (1157)
T PRK11447        444 LSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSV---W--LTYRLAQDLRQAG-QRSQADAL  517 (1157)
T ss_pred             CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---H--HHHHHHHHHHHcC-CHHHHHHH
Confidence                                        457999999999999999999964   3  3445999999999 99999999


Q ss_pred             HHHhhhhh
Q 029491          119 YDNHIWKE  126 (192)
Q Consensus       119 yd~~i~~~  126 (192)
                      |++.+...
T Consensus       518 l~~al~~~  525 (1157)
T PRK11447        518 MRRLAQQK  525 (1157)
T ss_pred             HHHHHHcC
Confidence            99998753

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.22  E-value=1.2e-10  Score=95.15  Aligned_cols=91  Identities=15%  Similarity=0.159  Sum_probs=85.8

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSL-LELGQ--MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ   77 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L-~e~g~--~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~   77 (192)
                      +|++++|+..+++++.++|+++.++..+|.++ ...|+  +++|++.++++++++|+++.++..+|.++.++|++++|+.
T Consensus        86 ~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~  165 (198)
T PRK10370         86 RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE  165 (198)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence            58999999999999999999999999999987 67787  5999999999999999999999999999999999999999


Q ss_pred             HHHHhHhhccCCCC
Q 029491           78 FMEECSSTWSSCSS   91 (192)
Q Consensus        78 ~~~~a~~~~p~~~~   91 (192)
                      .++++++..|...+
T Consensus       166 ~~~~aL~l~~~~~~  179 (198)
T PRK10370        166 LWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHHHhhCCCCcc
Confidence            99999999988654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.20  E-value=1.5e-10  Score=86.93  Aligned_cols=90  Identities=13%  Similarity=0.066  Sum_probs=87.0

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++.+|...+++++..+|+++.++..+|..+...|++++|+..+++++.++|+++..+..+|+++...|++++|+.+++
T Consensus        30 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  109 (135)
T TIGR02552        30 QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALD  109 (135)
T ss_pred             cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCC
Q 029491           81 ECSSTWSSCS   90 (192)
Q Consensus        81 ~a~~~~p~~~   90 (192)
                      ++++..|++.
T Consensus       110 ~al~~~p~~~  119 (135)
T TIGR02552       110 LAIEICGENP  119 (135)
T ss_pred             HHHHhccccc
Confidence            9999999864

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK11906 transcriptional regulator; Provisional

Probab=99.17  E-value=4.6e-10  Score=101.49  Aligned_cols=117  Identities=9%  Similarity=0.025  Sum_probs=100.7

Q ss_pred             ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491            3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC   82 (192)
Q Consensus         3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a   82 (192)
                      ...++++.++||++++|+|+++++.+|+++...|+++.|...++||+.||||++.++...|.++.+.|+.++|++.++++
T Consensus       319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a  398 (458)
T PRK11906        319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS  398 (458)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCcchhhhHHHHHH-HHHhCCCCHHHHHHHHHHhhhh
Q 029491           83 SSTWSSCSSFMYTHNWWHVAL-CYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        83 ~~~~p~~~~~~~~h~~WhlAl-~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      ++++|.--.   .-. --+-+ .|...+  .|+++++|-+....
T Consensus       399 lrLsP~~~~---~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~  436 (458)
T PRK11906        399 LQLEPRRRK---AVV-IKECVDMYVPNP--LKNNIKLYYKETES  436 (458)
T ss_pred             hccCchhhH---HHH-HHHHHHHHcCCc--hhhhHHHHhhcccc
Confidence            999988422   111 12334 456654  89999999775544

>PLN02789 farnesyltranstransferase

Probab=99.17  E-value=5.1e-10  Score=97.93  Aligned_cols=119  Identities=13%  Similarity=0.097  Sum_probs=111.0

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCH--HHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF--KEAVQF   78 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g-~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~--~eai~~   78 (192)
                      ++.++|+....+++..+|++..++...+.+|...| .++++...+.+++..||++.++++..+.++...|+.  ++.+.+
T Consensus        51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~  130 (320)
T PLN02789         51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF  130 (320)
T ss_pred             CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence            67889999999999999999999999999999999 689999999999999999999999999999999985  788999


Q ss_pred             HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++++..+|.+     .|.|.|.+.++-..| +++++++.|++.|...
T Consensus       131 ~~kal~~dpkN-----y~AW~~R~w~l~~l~-~~~eeL~~~~~~I~~d  172 (320)
T PLN02789        131 TRKILSLDAKN-----YHAWSHRQWVLRTLG-GWEDELEYCHQLLEED  172 (320)
T ss_pred             HHHHHHhCccc-----HHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHC
Confidence            99999999984     578889999988888 8999999999999874

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.17  E-value=4.4e-10  Score=112.28  Aligned_cols=120  Identities=12%  Similarity=0.108  Sum_probs=107.3

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHH--------------HHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW--------------SQHALCHVL   66 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~--------------A~h~lahvl   66 (192)
                      .|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++++|++..              .....|.++
T Consensus       282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~  361 (1157)
T PRK11447        282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA  361 (1157)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence            489999999999999999999999999999999999999999999999999998753              234568889


Q ss_pred             HhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           67 QHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        67 ~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ..+|++++|+..+++++...|.+.   ..+.  .+|.+++..| ++++|++.|++++...
T Consensus       362 ~~~g~~~eA~~~~~~Al~~~P~~~---~a~~--~Lg~~~~~~g-~~~eA~~~y~~aL~~~  415 (1157)
T PRK11447        362 LKANNLAQAERLYQQARQVDNTDS---YAVL--GLGDVAMARK-DYAAAERYYQQALRMD  415 (1157)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCH---HHHH--HHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence            999999999999999999999854   3333  5999999998 9999999999999874

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.16  E-value=4.5e-10  Score=94.70  Aligned_cols=119  Identities=13%  Similarity=0.120  Sum_probs=102.4

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++.+|...++++....|.|+.+++.+|.+|.+.|++++|...+++|++|.|+++....|+|..+.-+|+.+.|...+.
T Consensus       113 ~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll  192 (257)
T COG5010         113 NGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLL  192 (257)
T ss_pred             hcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHH
Confidence            38899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      ++.-.-+.++.  ..|   ++|+..-..| ++++|..+-++.+.+
T Consensus       193 ~a~l~~~ad~~--v~~---NLAl~~~~~g-~~~~A~~i~~~e~~~  231 (257)
T COG5010         193 PAYLSPAADSR--VRQ---NLALVVGLQG-DFREAEDIAVQELLS  231 (257)
T ss_pred             HHHhCCCCchH--HHH---HHHHHHhhcC-ChHHHHhhccccccc
Confidence            98876555432  334   4888888888 899998887665554

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.16  E-value=1.6e-10  Score=77.69  Aligned_cols=68  Identities=13%  Similarity=0.088  Sum_probs=65.3

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhHhhcc
Q 029491           20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC-CFKEAVQFMEECSSTWS   87 (192)
Q Consensus        20 ~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~G-r~~eai~~~~~a~~~~p   87 (192)
                      +++..+..+|..+...|+|++|+..+.+|+.++|+++.++.++|.++..+| ++++|+..+++++.++|
T Consensus         1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            467889999999999999999999999999999999999999999999999 79999999999999987

...

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.15  E-value=3.8e-09  Score=92.19  Aligned_cols=117  Identities=14%  Similarity=0.055  Sum_probs=83.5

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD-CWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d-a~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      |+.++|+..+++++...|++..++.++|.++...|++++|++.+++++.++|++ ..++..++.++..+|++++|+..++
T Consensus       194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~  273 (389)
T PRK11788        194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR  273 (389)
T ss_pred             CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            667777777777777777777777777777777777777777777777777765 3556677777777777777777777


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      +++...|+..    ..  ..++..+...| ++++|+..|++.+..
T Consensus       274 ~~~~~~p~~~----~~--~~la~~~~~~g-~~~~A~~~l~~~l~~  311 (389)
T PRK11788        274 RALEEYPGAD----LL--LALAQLLEEQE-GPEAAQALLREQLRR  311 (389)
T ss_pred             HHHHhCCCch----HH--HHHHHHHHHhC-CHHHHHHHHHHHHHh
Confidence            7777766532    11  34677777777 778888777777765

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.14  E-value=2.3e-09  Score=103.12  Aligned_cols=118  Identities=14%  Similarity=0.065  Sum_probs=85.4

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |+.++++..++++.+.+|..+.++..+|..+...|++++|++.++++++++|+++.++..++.++..+|++++|+..+++
T Consensus        29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~  108 (765)
T PRK10049         29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQ  108 (765)
T ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            66777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ++...|+++   .   +-.+|.++...| ++++|+..|++.+...
T Consensus       109 ~l~~~P~~~---~---~~~la~~l~~~g-~~~~Al~~l~~al~~~  146 (765)
T PRK10049        109 LVSGAPDKA---N---LLALAYVYKRAG-RHWDELRAMTQALPRA  146 (765)
T ss_pred             HHHhCCCCH---H---HHHHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence            777776642   2   223666666776 7777777777777764

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.13  E-value=2.9e-09  Score=89.88  Aligned_cols=119  Identities=12%  Similarity=0.111  Sum_probs=108.9

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |+.+..+....+.+-..|.+.+++..+|-.+...|+|.+|+..+++|..++|+|+.++..+|-+|...||+++|...|.+
T Consensus        80 G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~q  159 (257)
T COG5010          80 GDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQ  159 (257)
T ss_pred             ccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHH
Confidence            67778888888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ++++.|+.|.   .-+  ++|..++-.| +++.|.+++..+....
T Consensus       160 Al~L~~~~p~---~~n--Nlgms~~L~g-d~~~A~~lll~a~l~~  198 (257)
T COG5010         160 ALELAPNEPS---IAN--NLGMSLLLRG-DLEDAETLLLPAYLSP  198 (257)
T ss_pred             HHHhccCCch---hhh--hHHHHHHHcC-CHHHHHHHHHHHHhCC
Confidence            9999999875   223  4899888888 9999999998888764

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.12  E-value=2.3e-10  Score=76.30  Aligned_cols=63  Identities=21%  Similarity=0.200  Sum_probs=59.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCC
Q 029491           27 ILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC   89 (192)
Q Consensus        27 ~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~   89 (192)
                      ++|..+.+.|++++|++.++++++.+|+++.++..+|.++..+|++++|+..+++++...|++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            578889999999999999999999999999999999999999999999999999999999985

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.11  E-value=4.6e-09  Score=86.17  Aligned_cols=123  Identities=11%  Similarity=0.039  Sum_probs=107.0

Q ss_pred             CCChHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHH---HHHHHHHHHHhc-----
Q 029491            1 MGRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW---SQHALCHVLQHD-----   69 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~---~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~---A~h~lahvl~~~-----   69 (192)
                      .|++.+|...+++++..+|+++   .++..+|.++...|++++|+..++++++..|+++.   ++..+|.++...     
T Consensus        46 ~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~  125 (235)
T TIGR03302        46 SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVD  125 (235)
T ss_pred             cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccccc
Confidence            4889999999999999999876   57789999999999999999999999999999887   788999999876     


Q ss_pred             ---CCHHHHHHHHHHhHhhccCCCCcchhhh--------------HHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           70 ---CCFKEAVQFMEECSSTWSSCSSFMYTHN--------------WWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        70 ---Gr~~eai~~~~~a~~~~p~~~~~~~~h~--------------~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                         |++++|+..+++++..+|.+..  ....              .+.+|.+++..| ++++|+..|++.+...
T Consensus       126 ~~~~~~~~A~~~~~~~~~~~p~~~~--~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~  196 (235)
T TIGR03302       126 RDQTAAREAFEAFQELIRRYPNSEY--APDAKKRMDYLRNRLAGKELYVARFYLKRG-AYVAAINRFETVVENY  196 (235)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCChh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHC
Confidence               8999999999999999999642  1111              134788889998 9999999999999874

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.11  E-value=2.1e-09  Score=84.57  Aligned_cols=115  Identities=12%  Similarity=0.116  Sum_probs=91.6

Q ss_pred             hHHHHHHHHhhcCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC---CHHHHHHHHHHHHhcCCHHHHHHH
Q 029491            4 PDLCFDIIHQVLPYNQQE--DFIFGILAFSLLELGQMSDAEEAAKKGLKINKH---DCWSQHALCHVLQHDCCFKEAVQF   78 (192)
Q Consensus         4 ~~~al~~~~ral~~~p~~--~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~---da~A~h~lahvl~~~Gr~~eai~~   78 (192)
                      +..+.+.+...+...+.+  .+.+..+|..+..+|++++|+..+++|+.+.|+   .+.++.++|.++..+|++++|+..
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~   94 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY   94 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            445566666666666655  688899999999999999999999999999877   457999999999999999999999


Q ss_pred             HHHhHhhccCCCCcchhhhHHHHHHHHH-------hCCCCHHHHHHHHHHhhh
Q 029491           79 MEECSSTWSSCSSFMYTHNWWHVALCYL-------EGHSPMRKVLEIYDNHIW  124 (192)
Q Consensus        79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l-------~~G~~~deAl~~yd~~i~  124 (192)
                      +++++.+.|...   ..++  ++|.++.       .+| ++++|+..|++++.
T Consensus        95 ~~~Al~~~~~~~---~~~~--~la~i~~~~~~~~~~~g-~~~~A~~~~~~a~~  141 (168)
T CHL00033         95 YFQALERNPFLP---QALN--NMAVICHYRGEQAIEQG-DSEIAEAWFDQAAE  141 (168)
T ss_pred             HHHHHHhCcCcH---HHHH--HHHHHHHHhhHHHHHcc-cHHHHHHHHHHHHH
Confidence            999999988753   3343  3565555       888 88877666665543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.10  E-value=1.2e-09  Score=105.11  Aligned_cols=117  Identities=14%  Similarity=0.049  Sum_probs=106.8

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++.+|+..+++++..+|+++.++..++.++.+.|++++|+..++++++++|+++. +..+|.++..+|++++|+..++
T Consensus        62 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~  140 (765)
T PRK10049         62 LKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMT  140 (765)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHH
Confidence            488999999999999999999999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW  124 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~  124 (192)
                      +++...|+.+   ..+.  .+|.++...| +.++|++.+++...
T Consensus       141 ~al~~~P~~~---~~~~--~la~~l~~~~-~~e~Al~~l~~~~~  178 (765)
T PRK10049        141 QALPRAPQTQ---QYPT--EYVQALRNNR-LSAPALGAIDDANL  178 (765)
T ss_pred             HHHHhCCCCH---HHHH--HHHHHHHHCC-ChHHHHHHHHhCCC
Confidence            9999999964   3343  4788887777 89999999986554

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.10  E-value=1.2e-09  Score=93.95  Aligned_cols=153  Identities=13%  Similarity=0.062  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHH
Q 029491           24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL  103 (192)
Q Consensus        24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl  103 (192)
                      -+=+-|.-+++.++|.+|...+.+||+|+|+|+--+-+.|-++...|..+.||..++.++.++|.+.   .  .|--+++
T Consensus        83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ys---k--ay~RLG~  157 (304)
T KOG0553|consen   83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYS---K--AYGRLGL  157 (304)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHH---H--HHHHHHH
Confidence            3445677889999999999999999999999999999999999999999999999999999998842   2  4445999


Q ss_pred             HHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcCcccchhchHHHHHHHHhhccCCCCcCc-cCC
Q 029491          104 CYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQVSIPSIFF-PLK  182 (192)
Q Consensus       104 ~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g~~~~~~~rw~~l~~~~~~~~~~~~~f~-~~~  182 (192)
                      +++.+| +|++|++.|.+++..+  |.+ .....-+..+....+..-   .+..+.+=.+++.....-.+..++|+ +|.
T Consensus       158 A~~~~g-k~~~A~~aykKaLeld--P~N-e~~K~nL~~Ae~~l~e~~---~~~~~~~~~d~~~~ig~~Pd~~s~~~~~l~  230 (304)
T KOG0553|consen  158 AYLALG-KYEEAIEAYKKALELD--PDN-ESYKSNLKIAEQKLNEPK---SSAQASGSFDMAGLIGAFPDSRSMFNGDLM  230 (304)
T ss_pred             HHHccC-cHHHHHHHHHhhhccC--CCc-HHHHHHHHHHHHHhcCCC---cccccccchhhhhhccCCccchhhhccccc
Confidence            999999 9999999999999886  533 233333566665555443   12345555566665555578889997 888


Q ss_pred             Ccchhh
Q 029491          183 NFSKLF  188 (192)
Q Consensus       183 ~~~~~~  188 (192)
                      |+.-|-
T Consensus       231 nnp~l~  236 (304)
T KOG0553|consen  231 NNPQLM  236 (304)
T ss_pred             cCHHHH
Confidence            877654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.09  E-value=2.4e-09  Score=87.83  Aligned_cols=120  Identities=8%  Similarity=0.015  Sum_probs=103.6

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHhcccCCCHHHH----------
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDF---IFGILAFSLLEL--------GQMSDAEEAAKKGLKINKHDCWSQ----------   59 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~---~~~~laf~L~e~--------g~~~eAe~~~rrALaL~P~da~A~----------   59 (192)
                      .|++++|+..+++++...|+++.   ++.++|.++.+.        |++++|.+.+++++..+|++..+.          
T Consensus        83 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~  162 (235)
T TIGR03302        83 SGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR  162 (235)
T ss_pred             cCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH
Confidence            48999999999999999998875   788899998876        889999999999999999998664          


Q ss_pred             -------HHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhh
Q 029491           60 -------HALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI  123 (192)
Q Consensus        60 -------h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i  123 (192)
                             .++|-++..+|++++|+..+++++...|+.+.  ..-.++.++.++..+| ++++|...++...
T Consensus       163 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~a~~~l~~~~~~lg-~~~~A~~~~~~l~  230 (235)
T TIGR03302       163 NRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPA--TEEALARLVEAYLKLG-LKDLAQDAAAVLG  230 (235)
T ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence                   25677889999999999999999999998654  3446667999999999 9999999876544

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.08  E-value=2.4e-09  Score=71.49  Aligned_cols=96  Identities=17%  Similarity=0.186  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHH
Q 029491           24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL  103 (192)
Q Consensus        24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl  103 (192)
                      ++..+|..+...|++++|+..+++++.++|++..++..+|.++..+|++++|+..+++++...|..+.     .++.+|.
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~~   76 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAK-----AYYNLGL   76 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchh-----HHHHHHH
Confidence            45678888999999999999999999999999999999999999999999999999999999888542     4556999


Q ss_pred             HHHhCCCCHHHHHHHHHHhhhh
Q 029491          104 CYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus       104 ~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      ++...| ++++|...+++.+..
T Consensus        77 ~~~~~~-~~~~a~~~~~~~~~~   97 (100)
T cd00189          77 AYYKLG-KYEEALEAYEKALEL   97 (100)
T ss_pred             HHHHHH-hHHHHHHHHHHHHcc
Confidence            999998 899999999887754

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.05  E-value=3.1e-09  Score=93.95  Aligned_cols=94  Identities=7%  Similarity=-0.062  Sum_probs=85.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHH
Q 029491           27 ILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYL  106 (192)
Q Consensus        27 ~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l  106 (192)
                      ..|..+...|+|++|++.+++||+++|+++.++.++|.++..+|++++|+..+++++.+.|.++   .+  +..+|.+++
T Consensus         7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~---~a--~~~lg~~~~   81 (356)
T PLN03088          7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLA---KA--YLRKGTACM   81 (356)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH---HH--HHHHHHHHH
Confidence            4466778899999999999999999999999999999999999999999999999999999853   33  345999999


Q ss_pred             hCCCCHHHHHHHHHHhhhhh
Q 029491          107 EGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus       107 ~~G~~~deAl~~yd~~i~~~  126 (192)
                      .+| +|++|+..|++++...
T Consensus        82 ~lg-~~~eA~~~~~~al~l~  100 (356)
T PLN03088         82 KLE-EYQTAKAALEKGASLA  100 (356)
T ss_pred             HhC-CHHHHHHHHHHHHHhC
Confidence            999 9999999999999885

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.05  E-value=5.9e-09  Score=86.99  Aligned_cols=152  Identities=11%  Similarity=0.039  Sum_probs=123.1

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--cCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI--NKHDCWSQHALCHVLQHDCCFKEAVQF   78 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL--~P~da~A~h~lahvl~~~Gr~~eai~~   78 (192)
                      .|+.+.|.+.+++|+.++|++..+++++|.-|+.+|++++|...+++|++.  =|.-+..+-|+|.+-..+|+++.|...
T Consensus        82 ~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~  161 (250)
T COG3063          82 LGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEY  161 (250)
T ss_pred             cCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHH
Confidence            488899999999999999999999999999999999999999999999984  256778999999999999999999999


Q ss_pred             HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcCcccchh
Q 029491           79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFG  158 (192)
Q Consensus        79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g~~~~~~  158 (192)
                      ++++++++|+.++     ..--+|-.+++.| +|-.|...+++.-...    + .    ..+..=|.||+.-.=.+.+..
T Consensus       162 l~raL~~dp~~~~-----~~l~~a~~~~~~~-~y~~Ar~~~~~~~~~~----~-~----~A~sL~L~iriak~~gd~~~a  226 (250)
T COG3063         162 LKRALELDPQFPP-----ALLELARLHYKAG-DYAPARLYLERYQQRG----G-A----QAESLLLGIRIAKRLGDRAAA  226 (250)
T ss_pred             HHHHHHhCcCCCh-----HHHHHHHHHHhcc-cchHHHHHHHHHHhcc----c-c----cHHHHHHHHHHHHHhccHHHH
Confidence            9999999999775     2223888889998 9999999998876653    1 1    223334556666554444556


Q ss_pred             chHHHHHHH
Q 029491          159 NRLKVLADC  167 (192)
Q Consensus       159 ~rw~~l~~~  167 (192)
                      .||+.....
T Consensus       227 ~~Y~~qL~r  235 (250)
T COG3063         227 QRYQAQLQR  235 (250)
T ss_pred             HHHHHHHHH
Confidence            677665544

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.03  E-value=6.8e-09  Score=90.59  Aligned_cols=119  Identities=14%  Similarity=0.088  Sum_probs=62.0

Q ss_pred             CChHHHHHHHHhhcCCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQED-----FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAV   76 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~-----~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai   76 (192)
                      |++++|+..+.+++...|.+.     .++..+|..+.++|++++|+..++++++++|++..++..+|.++..+|++++|+
T Consensus       155 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  234 (389)
T PRK11788        155 KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAI  234 (389)
T ss_pred             chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHH
Confidence            445555555555554444331     233445555555556666666666666555655555555666666666666666


Q ss_pred             HHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           77 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        77 ~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      ..++++....|....  .  .+-.++.++...| ++++|...+++.+..
T Consensus       235 ~~~~~~~~~~p~~~~--~--~~~~l~~~~~~~g-~~~~A~~~l~~~~~~  278 (389)
T PRK11788        235 EALERVEEQDPEYLS--E--VLPKLMECYQALG-DEAEGLEFLRRALEE  278 (389)
T ss_pred             HHHHHHHHHChhhHH--H--HHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence            666655555444211  1  1112455555555 556666655555544

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.02  E-value=3.2e-09  Score=70.93  Aligned_cols=87  Identities=17%  Similarity=0.184  Sum_probs=83.2

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++.+++..+++++...|.++.++..+|.++...|++++|+..+++++.++|.+..++..++.++..+|+.++|...++
T Consensus        13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   92 (100)
T cd00189          13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYE   92 (100)
T ss_pred             HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhcc
Q 029491           81 ECSSTWS   87 (192)
Q Consensus        81 ~a~~~~p   87 (192)
                      ++++..|
T Consensus        93 ~~~~~~~   99 (100)
T cd00189          93 KALELDP   99 (100)
T ss_pred             HHHccCC
Confidence            9998766

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.01  E-value=3.9e-09  Score=97.77  Aligned_cols=117  Identities=10%  Similarity=-0.039  Sum_probs=101.2

Q ss_pred             ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHhcc--cCCCHHHHHHHHHHHHhcCCH
Q 029491            3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL--------GQMSDAEEAAKKGLKI--NKHDCWSQHALCHVLQHDCCF   72 (192)
Q Consensus         3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~--------g~~~eAe~~~rrALaL--~P~da~A~h~lahvl~~~Gr~   72 (192)
                      ....+++.+++|++.+|++++++..+++++...        .+.+++.+.+++++++  +|.++.++.++|.+...+|++
T Consensus       357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~  436 (517)
T PRK10153        357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT  436 (517)
T ss_pred             HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH
Confidence            366899999999999999999999998877554        2356677888888775  888999999999999999999


Q ss_pred             HHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           73 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        73 ~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ++|.+.+++++.++|. .   .+|+.  +|.++...| ++++|.+.|++++..+
T Consensus       437 ~~A~~~l~rAl~L~ps-~---~a~~~--lG~~~~~~G-~~~eA~~~~~~A~~L~  483 (517)
T PRK10153        437 DEAYQAINKAIDLEMS-W---LNYVL--LGKVYELKG-DNRLAADAYSTAFNLR  483 (517)
T ss_pred             HHHHHHHHHHHHcCCC-H---HHHHH--HHHHHHHcC-CHHHHHHHHHHHHhcC
Confidence            9999999999999984 2   45665  899998998 9999999999999885

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.00  E-value=3.1e-09  Score=84.10  Aligned_cols=87  Identities=8%  Similarity=-0.103  Sum_probs=83.9

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|+.++|...++-++..+|.++..+..+|.++...|+|++|+..+.+|+.|+|+||.++.+.|.++...|+.++|...++
T Consensus        48 ~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~  127 (157)
T PRK15363         48 VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALK  127 (157)
T ss_pred             CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhcc
Q 029491           81 ECSSTWS   87 (192)
Q Consensus        81 ~a~~~~p   87 (192)
                      .++..-.
T Consensus       128 ~Ai~~~~  134 (157)
T PRK15363        128 AVVRICG  134 (157)
T ss_pred             HHHHHhc
Confidence            9997753

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.98  E-value=6.5e-09  Score=75.40  Aligned_cols=99  Identities=13%  Similarity=0.058  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHH
Q 029491           24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWH  100 (192)
Q Consensus        24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~Wh  100 (192)
                      .+...|..+.+.|++++|++.+++++..+|++   +.+...+|-++...|++++|+..+++++...|+.+.  ....+..
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~~~~~   81 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK--APDALLK   81 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc--ccHHHHH
Confidence            45667777888888888888888888888876   567788888888888888888888888888877542  1234455


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491          101 VALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus       101 lAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      +|.++...| ++++|...|++.+..
T Consensus        82 ~~~~~~~~~-~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        82 LGMSLQELG-DKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHHHhC-ChHHHHHHHHHHHHH
Confidence            788888887 788888888887764

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=5.9e-09  Score=94.16  Aligned_cols=119  Identities=13%  Similarity=0.181  Sum_probs=110.6

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      ++++.|...++||+.++|.+..++...|.-++|+.....|.+.+|+|+.+||.|--||..+|.++...+=|.=|+-++++
T Consensus       344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqk  423 (559)
T KOG1155|consen  344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQK  423 (559)
T ss_pred             HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      |...-|.++.     .|--+|.+|..++ +.++|++.|.+++...
T Consensus       424 A~~~kPnDsR-----lw~aLG~CY~kl~-~~~eAiKCykrai~~~  462 (559)
T KOG1155|consen  424 ALELKPNDSR-----LWVALGECYEKLN-RLEEAIKCYKRAILLG  462 (559)
T ss_pred             HHhcCCCchH-----HHHHHHHHHHHhc-cHHHHHHHHHHHHhcc
Confidence            9999999753     5556999999998 9999999999999874

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.97  E-value=3.7e-08  Score=77.95  Aligned_cols=114  Identities=17%  Similarity=0.244  Sum_probs=90.8

Q ss_pred             HHHHHHHhhcCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---HHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            6 LCFDIIHQVLPYNQ--QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         6 ~al~~~~ral~~~p--~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---a~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      -+-+.+.+.++.++  ..+.++..+|..+...|++++|...+++++.++|+.   +.+++.+|.++...|++++|+..++
T Consensus        17 ~~~~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~   96 (172)
T PRK02603         17 VMADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYH   96 (172)
T ss_pred             HHHHHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34556666777654  557788999999999999999999999999998874   5799999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCC--------------HHHHHHHHHHhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSP--------------MRKVLEIYDNHIWK  125 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~--------------~deAl~~yd~~i~~  125 (192)
                      ++++..|...   ..+  ..+|.++...| +              +++|++++++.+..
T Consensus        97 ~al~~~p~~~---~~~--~~lg~~~~~~g-~~~~a~~~~~~A~~~~~~A~~~~~~a~~~  149 (172)
T PRK02603         97 QALELNPKQP---SAL--NNIAVIYHKRG-EKAEEAGDQDEAEALFDKAAEYWKQAIRL  149 (172)
T ss_pred             HHHHhCcccH---HHH--HHHHHHHHHcC-ChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence            9999988853   333  35888887776 5              45566666655554

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.97  E-value=6e-09  Score=94.67  Aligned_cols=137  Identities=15%  Similarity=0.235  Sum_probs=116.3

Q ss_pred             ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491            3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC   82 (192)
Q Consensus         3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a   82 (192)
                      +..++...+..|..++|+++.++.-.|-++.-.++|++|.+-+++|++|+|.++.++..+|-+++.++++++....++.+
T Consensus       375 ~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~  454 (606)
T KOG0547|consen  375 QSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEA  454 (606)
T ss_pred             ccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCC---CCChHHHHHHHHHHHH
Q 029491           83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPD---AVHPEVYLNALGLLLR  147 (192)
Q Consensus        83 ~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~---~~~~~~~~da~sLL~R  147 (192)
                      ....|.++.   +.+.  .|..+.+.+ +++.|++.||.+|..+  |..   -+.+..+|.-+-|+.|
T Consensus       455 kkkFP~~~E---vy~~--fAeiLtDqq-qFd~A~k~YD~ai~LE--~~~~~~~v~~~plV~Ka~l~~q  514 (606)
T KOG0547|consen  455 KKKFPNCPE---VYNL--FAEILTDQQ-QFDKAVKQYDKAIELE--PREHLIIVNAAPLVHKALLVLQ  514 (606)
T ss_pred             HHhCCCCch---HHHH--HHHHHhhHH-hHHHHHHHHHHHHhhc--cccccccccchhhhhhhHhhhc
Confidence            999999975   3444  788888998 9999999999999885  430   1122335555555544

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.96  E-value=2.5e-08  Score=72.28  Aligned_cols=90  Identities=14%  Similarity=0.010  Sum_probs=83.8

Q ss_pred             CCChHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---HHHHHHHHHHHHhcCCHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKE   74 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~---~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---a~A~h~lahvl~~~Gr~~e   74 (192)
                      .|++++|...+.+++..+|++   +.++..+|.++.+.|++++|...+++++.++|++   ++++..+|.++..+|+.++
T Consensus        15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~   94 (119)
T TIGR02795        15 AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEK   94 (119)
T ss_pred             cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHH
Confidence            488999999999999998877   5688899999999999999999999999999986   7899999999999999999


Q ss_pred             HHHHHHHhHhhccCCC
Q 029491           75 AVQFMEECSSTWSSCS   90 (192)
Q Consensus        75 ai~~~~~a~~~~p~~~   90 (192)
                      |+..+++++...|+++
T Consensus        95 A~~~~~~~~~~~p~~~  110 (119)
T TIGR02795        95 AKATLQQVIKRYPGSS  110 (119)
T ss_pred             HHHHHHHHHHHCcCCh
Confidence            9999999999999854

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.96  E-value=3.7e-09  Score=98.28  Aligned_cols=117  Identities=13%  Similarity=0.001  Sum_probs=108.7

Q ss_pred             ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491            3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC   82 (192)
Q Consensus         3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a   82 (192)
                      .++.|..+++.||..+|++--++.-+|.++..+++++.|+-.+++|+.+||.+....-.+|-+++..|+.++|+..|++|
T Consensus       470 e~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A  549 (638)
T KOG1126|consen  470 EFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKA  549 (638)
T ss_pred             HHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        83 ~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      .-++|.++     +--.|.|..+..++ +|++|+..+|.....
T Consensus       550 ~~ld~kn~-----l~~~~~~~il~~~~-~~~eal~~LEeLk~~  586 (638)
T KOG1126|consen  550 IHLDPKNP-----LCKYHRASILFSLG-RYVEALQELEELKEL  586 (638)
T ss_pred             HhcCCCCc-----hhHHHHHHHHHhhc-chHHHHHHHHHHHHh
Confidence            99999964     24457999999999 999999999987655

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.94  E-value=4.1e-09  Score=95.30  Aligned_cols=69  Identities=14%  Similarity=0.004  Sum_probs=66.5

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHhHhh
Q 029491           17 YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW---SQHALCHVLQHDCCFKEAVQFMEECSST   85 (192)
Q Consensus        17 ~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~---A~h~lahvl~~~Gr~~eai~~~~~a~~~   85 (192)
                      .+|+++.++.++|.+|.+.|+|++|++.+++||+++|+++.   ++.++|-++..+|+.+||++.+++++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            57999999999999999999999999999999999999995   5999999999999999999999999997

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.94  E-value=1e-08  Score=88.59  Aligned_cols=119  Identities=10%  Similarity=0.061  Sum_probs=97.2

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----HhcccCCCHHHHHHHHHHHHhcCCHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKK----GLKINKHDCWSQHALCHVLQHDCCFKEAV   76 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rr----ALaL~P~da~A~h~lahvl~~~Gr~~eai   76 (192)
                      .|+.++++..+++++..+|++..++.+ ++.+...|++..+...+.+    ....+|++.++...+|.++..+|++++|+
T Consensus        56 ~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~  134 (355)
T cd05804          56 AGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAE  134 (355)
T ss_pred             cCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            488999999999999999999988776 6666555554444444444    44788889999999999999999999999


Q ss_pred             HHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           77 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        77 ~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ..+++++...|+++   .  ....+|.++++.| ++++|...+++.+...
T Consensus       135 ~~~~~al~~~p~~~---~--~~~~la~i~~~~g-~~~eA~~~l~~~l~~~  178 (355)
T cd05804         135 EAARRALELNPDDA---W--AVHAVAHVLEMQG-RFKEGIAFMESWRDTW  178 (355)
T ss_pred             HHHHHHHhhCCCCc---H--HHHHHHHHHHHcC-CHHHHHHHHHhhhhcc
Confidence            99999999999964   2  2334899999998 9999999999988763

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.93  E-value=6e-08  Score=87.91  Aligned_cols=151  Identities=16%  Similarity=0.122  Sum_probs=124.4

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|+.++++...+..+...|+++|+..+.+-++.+.|+..+|.+.+++++++.|+.++...++|.+|...|+++|||..+.
T Consensus       319 ~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~  398 (484)
T COG4783         319 AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILN  398 (484)
T ss_pred             hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHH
Confidence            47888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHH-HHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcCcccchhc
Q 029491           81 ECSSTWSSCSSFMYTHNWW-HVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGN  159 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~W-hlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g~~~~~~~  159 (192)
                      +.+...|+++.      +| -+|.++-++| +..++...+-......    +     .+-.+..++-|..-...-  -..
T Consensus       399 ~~~~~~p~dp~------~w~~LAqay~~~g-~~~~a~~A~AE~~~~~----G-----~~~~A~~~l~~A~~~~~~--~~~  460 (484)
T COG4783         399 RYLFNDPEDPN------GWDLLAQAYAELG-NRAEALLARAEGYALA----G-----RLEQAIIFLMRASQQVKL--GFP  460 (484)
T ss_pred             HHhhcCCCCch------HHHHHHHHHHHhC-chHHHHHHHHHHHHhC----C-----CHHHHHHHHHHHHHhccC--CcH
Confidence            99999999763      34 4899998998 8899998888777763    1     244555556555443321  234


Q ss_pred             hHHHHHHHHh
Q 029491          160 RLKVLADCVA  169 (192)
Q Consensus       160 rw~~l~~~~~  169 (192)
                      .|.++-+...
T Consensus       461 ~~aR~dari~  470 (484)
T COG4783         461 DWARADARID  470 (484)
T ss_pred             HHHHHHHHHH
Confidence            5665554443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.90  E-value=9.9e-09  Score=95.09  Aligned_cols=112  Identities=13%  Similarity=0.077  Sum_probs=90.0

Q ss_pred             HHHHHHHHhhcC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491            5 DLCFDIIHQVLP--YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC   82 (192)
Q Consensus         5 ~~al~~~~ral~--~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a   82 (192)
                      +.+.+.+++++.  .+|.++.+|..+|......|++++|++.++||+++|| ++.++..+|.+++.+|++++|++.+++|
T Consensus       401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A  479 (517)
T PRK10153        401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTA  479 (517)
T ss_pred             HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            456666777555  5888899999999999999999999999999999999 5899999999999999999999999999


Q ss_pred             HhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        83 ~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      ++++|..|.    .++|+-..+|-    +.+...-...+.+.+
T Consensus       480 ~~L~P~~pt----~~~~~~~~f~~----~~~~~~~~~~~~~~~  514 (517)
T PRK10153        480 FNLRPGENT----LYWIENLVFQT----SVETVVPYLYRFLAP  514 (517)
T ss_pred             HhcCCCCch----HHHHHhccccc----cHHHHHHHHHhccCc
Confidence            999999764    25555555542    444544444444443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.89  E-value=9.1e-08  Score=73.75  Aligned_cols=115  Identities=17%  Similarity=0.157  Sum_probs=95.3

Q ss_pred             CChHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---HHHHHHHHHHHHhcCCHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEA   75 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~---~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---a~A~h~lahvl~~~Gr~~ea   75 (192)
                      |+...+...+++.+..+|+.   ..+...+|-.+.+.|++++|.+.+++++.-.|++   +.+...++.++..+|++++|
T Consensus        25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~A  104 (145)
T PF09976_consen   25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEA  104 (145)
T ss_pred             CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            56677777788888888888   4566778899999999999999999999988776   46888899999999999999


Q ss_pred             HHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhh
Q 029491           76 VQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI  123 (192)
Q Consensus        76 i~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i  123 (192)
                      +..++... .    +++ ....+.-.|.+++..| ++++|...|+++|
T Consensus       105 l~~L~~~~-~----~~~-~~~~~~~~Gdi~~~~g-~~~~A~~~y~~Al  145 (145)
T PF09976_consen  105 LATLQQIP-D----EAF-KALAAELLGDIYLAQG-DYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHhcc-C----cch-HHHHHHHHHHHHHHCC-CHHHHHHHHHHhC
Confidence            99997632 1    122 3445667999999999 9999999999875

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.88  E-value=5.8e-09  Score=73.13  Aligned_cols=82  Identities=13%  Similarity=0.175  Sum_probs=67.7

Q ss_pred             HcCCHHHHHHHHHHHhcccCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCC
Q 029491           34 ELGQMSDAEEAAKKGLKINKH--DCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSP  111 (192)
Q Consensus        34 e~g~~~eAe~~~rrALaL~P~--da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~  111 (192)
                      ++|+|++|+..+++.++.+|.  +...+..+|.++..+|++++|+..+++ ....|.+.   .  ..+-+|.+++.+| +
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~---~--~~~l~a~~~~~l~-~   73 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNP---D--IHYLLARCLLKLG-K   73 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHH---H--HHHHHHHHHHHTT--
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCH---H--HHHHHHHHHHHhC-C
Confidence            478999999999999999996  466777789999999999999999999 76766531   3  4456899999999 9


Q ss_pred             HHHHHHHHHHh
Q 029491          112 MRKVLEIYDNH  122 (192)
Q Consensus       112 ~deAl~~yd~~  122 (192)
                      |++|+..|+++
T Consensus        74 y~eAi~~l~~~   84 (84)
T PF12895_consen   74 YEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999999763

>TIGR00540 hemY_coli hemY protein

Probab=98.87  E-value=2.9e-08  Score=88.86  Aligned_cols=119  Identities=14%  Similarity=0.032  Sum_probs=101.8

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH--HHHHHHHHHHHhcCCHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFI--FGILAFSLLELGQMSDAEEAAKKGLKINKHDC--WSQHALCHVLQHDCCFKEAV   76 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~--~~~laf~L~e~g~~~eAe~~~rrALaL~P~da--~A~h~lahvl~~~Gr~~eai   76 (192)
                      .|+.++|+..+++++...|++...  ..+........++.+.+++.++++++.+|+|+  ....++|.++..+|++++|.
T Consensus       276 ~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~  355 (409)
T TIGR00540       276 CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAA  355 (409)
T ss_pred             CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHH
Confidence            489999999999999999988743  24455555567889999999999999999999  99999999999999999999


Q ss_pred             HHHH--HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           77 QFME--ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        77 ~~~~--~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .+++  ++....|+.    .  ...|+|..+..+| +.++|.++|++.+.+-
T Consensus       356 ~~le~a~a~~~~p~~----~--~~~~La~ll~~~g-~~~~A~~~~~~~l~~~  400 (409)
T TIGR00540       356 DAFKNVAACKEQLDA----N--DLAMAADAFDQAG-DKAEAAAMRQDSLGLM  400 (409)
T ss_pred             HHHHHhHHhhcCCCH----H--HHHHHHHHHHHcC-CHHHHHHHHHHHHHHH
Confidence            9999  577777763    2  3448999999999 8999999999987763

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.86  E-value=2.6e-08  Score=78.32  Aligned_cols=80  Identities=10%  Similarity=0.044  Sum_probs=69.3

Q ss_pred             CCChHHHHHHHHhhcCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHH-------hcC
Q 029491            1 MGRPDLCFDIIHQVLPYNQQ---EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQ-------HDC   70 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~---~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~-------~~G   70 (192)
                      +|++++|+..+++++...|+   .+.++.++|.++...|++++|++.+++|+.++|..+.++.++|.++.       .+|
T Consensus        48 ~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g  127 (168)
T CHL00033         48 EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQG  127 (168)
T ss_pred             cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcc
Confidence            48999999999999988665   46799999999999999999999999999999999999999999999       666


Q ss_pred             CHHHHHHHHH
Q 029491           71 CFKEAVQFME   80 (192)
Q Consensus        71 r~~eai~~~~   80 (192)
                      ++++|+..++
T Consensus       128 ~~~~A~~~~~  137 (168)
T CHL00033        128 DSEIAEAWFD  137 (168)
T ss_pred             cHHHHHHHHH
Confidence            6664443333

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.85  E-value=1.4e-08  Score=93.41  Aligned_cols=116  Identities=8%  Similarity=0.033  Sum_probs=103.8

Q ss_pred             HHHHHHHHhhcCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491            5 DLCFDIIHQVLPYNQ--QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC   82 (192)
Q Consensus         5 ~~al~~~~ral~~~p--~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a   82 (192)
                      ......+..+....|  .|+.++..||..+.-.|+|++|..+++.||..+|+|.-.|.-||-++.-..|.+|||..|.+|
T Consensus       411 ~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA  490 (579)
T KOG1125|consen  411 AHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRA  490 (579)
T ss_pred             HHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence            344556666666778  799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        83 ~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +.+.|..   .+  .+.++|++++-+| .|.||+..|=.+|.-.
T Consensus       491 LqLqP~y---VR--~RyNlgIS~mNlG-~ykEA~~hlL~AL~mq  528 (579)
T KOG1125|consen  491 LQLQPGY---VR--VRYNLGISCMNLG-AYKEAVKHLLEALSMQ  528 (579)
T ss_pred             HhcCCCe---ee--eehhhhhhhhhhh-hHHHHHHHHHHHHHhh
Confidence            9999874   34  5556999999999 8999999999998875

>PLN02789 farnesyltranstransferase

Probab=98.84  E-value=6.3e-08  Score=84.77  Aligned_cols=118  Identities=13%  Similarity=0.094  Sum_probs=101.7

Q ss_pred             ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQM--SDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~--~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      +..++++.+.+++..+|.+..++...+.++...|+.  +++.+...++|+++|+|..|+..++.++...|+.++++.+++
T Consensus        87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~  166 (320)
T PLN02789         87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCH  166 (320)
T ss_pred             hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            468999999999999999999999999999999974  778999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhC---CCCH----HHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEG---HSPM----RKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~---G~~~----deAl~~yd~~i~~~  126 (192)
                      ++++.+|++++     .|.|.+.....+   | .+    ++.+..++++|...
T Consensus       167 ~~I~~d~~N~s-----AW~~R~~vl~~~~~l~-~~~~~~e~el~y~~~aI~~~  213 (320)
T PLN02789        167 QLLEEDVRNNS-----AWNQRYFVITRSPLLG-GLEAMRDSELKYTIDAILAN  213 (320)
T ss_pred             HHHHHCCCchh-----HHHHHHHHHHhccccc-cccccHHHHHHHHHHHHHhC
Confidence            99999999654     566677665443   3 23    46787778888764

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.81  E-value=1.2e-08  Score=67.91  Aligned_cols=56  Identities=16%  Similarity=0.208  Sum_probs=52.5

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC   56 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da   56 (192)
                      .|++++|+..+++++..+|+++.++..+|.++..+|++++|++.++++++++|+||
T Consensus        10 ~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen   10 QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            48899999999999999999999999999999999999999999999999999986

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.81  E-value=1.5e-07  Score=71.46  Aligned_cols=102  Identities=16%  Similarity=0.096  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhH
Q 029491           22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNW   98 (192)
Q Consensus        22 ~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~   98 (192)
                      |.++..+|.++-..|+.++|+..+++|++..+..   ..+...+|.++...|++++|+..+++.+...|+++.  ..-..
T Consensus         1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~--~~~l~   78 (120)
T PF12688_consen    1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDEL--NAALR   78 (120)
T ss_pred             CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc--cHHHH
Confidence            3467889999999999999999999999986655   568899999999999999999999999999888432  22223


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           99 WHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        99 WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      -.+|+++...| +.+||++++-..+.+.
T Consensus        79 ~f~Al~L~~~g-r~~eAl~~~l~~la~~  105 (120)
T PF12688_consen   79 VFLALALYNLG-RPKEALEWLLEALAET  105 (120)
T ss_pred             HHHHHHHHHCC-CHHHHHHHHHHHHHHH
Confidence            34889999999 9999999998888763

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.74  E-value=1.3e-07  Score=89.58  Aligned_cols=119  Identities=14%  Similarity=0.146  Sum_probs=110.4

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH--HH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ--FM   79 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~--~~   79 (192)
                      |..+++..++..+-..+|..++.+.+.|..++..|...||.+.+.-|+.+||+++...+++|-++...|+..=+..  ++
T Consensus       664 ~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L  743 (799)
T KOG4162|consen  664 GNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLL  743 (799)
T ss_pred             CCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHH
Confidence            4567888889999999999999999999999999999999999999999999999999999999999999988888  99


Q ss_pred             HHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        80 ~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ..+++++|.++.     .|..+|-.+..+| +.++|...|+.++..+
T Consensus       744 ~dalr~dp~n~e-----aW~~LG~v~k~~G-d~~~Aaecf~aa~qLe  784 (799)
T KOG4162|consen  744 SDALRLDPLNHE-----AWYYLGEVFKKLG-DSKQAAECFQAALQLE  784 (799)
T ss_pred             HHHHhhCCCCHH-----HHHHHHHHHHHcc-chHHHHHHHHHHHhhc
Confidence            999999999753     6668999999999 8999999999999986

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=1.7e-07  Score=84.88  Aligned_cols=120  Identities=13%  Similarity=0.042  Sum_probs=110.0

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      |.+...|.++++||+..+|.|--++.-+|-+++-++-+.-|.=.+++|+++.|+|+-.+.+||.++...++.+|||..|.
T Consensus       377 mKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCyk  456 (559)
T KOG1155|consen  377 MKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYK  456 (559)
T ss_pred             hcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++.......     ...|-+|-.|-+++ ++++|...|++-|...
T Consensus       457 rai~~~dte~-----~~l~~LakLye~l~-d~~eAa~~yek~v~~~  496 (559)
T KOG1155|consen  457 RAILLGDTEG-----SALVRLAKLYEELK-DLNEAAQYYEKYVEVS  496 (559)
T ss_pred             HHHhccccch-----HHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence            9998865532     36678999999998 8999999999999864

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.70  E-value=1.3e-07  Score=74.76  Aligned_cols=88  Identities=11%  Similarity=0.166  Sum_probs=76.1

Q ss_pred             CCChHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCC------
Q 029491            1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC------   71 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~---~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr------   71 (192)
                      .|++++|...+++++...|+.   +.++..+|.++...|++++|++.+++++.++|+++.++..+|.++...|+      
T Consensus        48 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~  127 (172)
T PRK02603         48 DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAG  127 (172)
T ss_pred             cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhh
Confidence            489999999999999876653   57899999999999999999999999999999999999999999999988      


Q ss_pred             --------HHHHHHHHHHhHhhccC
Q 029491           72 --------FKEAVQFMEECSSTWSS   88 (192)
Q Consensus        72 --------~~eai~~~~~a~~~~p~   88 (192)
                              +++|++.+++++...|+
T Consensus       128 ~~~~A~~~~~~A~~~~~~a~~~~p~  152 (172)
T PRK02603        128 DQDEAEALFDKAAEYWKQAIRLAPN  152 (172)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhCch
Confidence                    45566666666666555

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.70  E-value=4.5e-07  Score=88.22  Aligned_cols=116  Identities=11%  Similarity=-0.000  Sum_probs=91.3

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |+.++|+..+++++.-.|...+.+..+|..+...|++++|++.++++++++|+++.++..++.++...|+.++|+..+++
T Consensus        82 G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~  161 (822)
T PRK14574         82 GRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATE  161 (822)
T ss_pred             CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence            77788888888888333444444444477888999999999999999999999999999999999999999999999999


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHh--CCCCHHHHHHHHHHhhhhh
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLE--GHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~--~G~~~deAl~~yd~~i~~~  126 (192)
                      +.+..|...      .  -+++.++.  .+ ++.+|++.|++.+...
T Consensus       162 l~~~dp~~~------~--~l~layL~~~~~-~~~~AL~~~ekll~~~  199 (822)
T PRK14574        162 LAERDPTVQ------N--YMTLSYLNRATD-RNYDALQASSEAVRLA  199 (822)
T ss_pred             hcccCcchH------H--HHHHHHHHHhcc-hHHHHHHHHHHHHHhC
Confidence            998887721      1  15555555  34 4656999999999885

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=1e-06  Score=75.82  Aligned_cols=138  Identities=11%  Similarity=-0.005  Sum_probs=112.9

Q ss_pred             hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCC---HHHHHHHHH
Q 029491            4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC---FKEAVQFME   80 (192)
Q Consensus         4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr---~~eai~~~~   80 (192)
                      .++.....+..+..+|+|+.-+-++|-+++.+|+++.|+..|++|+.|.|+++...-.+|.++..+..   ..++...++
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            34566677888889999999999999999999999999999999999999999999999999998875   578999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYV  150 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l  150 (192)
                      +++.++|.+.   .  ..|-+|..+++.| +|.+|+...+..+...  | ...+-..++..+-..-+...
T Consensus       218 ~al~~D~~~i---r--al~lLA~~afe~g-~~~~A~~~Wq~lL~~l--p-~~~~rr~~ie~~ia~~~~~~  278 (287)
T COG4235         218 QALALDPANI---R--ALSLLAFAAFEQG-DYAEAAAAWQMLLDLL--P-ADDPRRSLIERSIARALAQR  278 (287)
T ss_pred             HHHhcCCccH---H--HHHHHHHHHHHcc-cHHHHHHHHHHHHhcC--C-CCCchHHHHHHHHHHHHhcc
Confidence            9999999963   3  4445999999999 9999999999988774  3 22233445555444444333

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.68  E-value=6.7e-08  Score=65.37  Aligned_cols=62  Identities=15%  Similarity=0.070  Sum_probs=57.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCC
Q 029491           29 AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS   90 (192)
Q Consensus        29 af~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~   90 (192)
                      .-++...+++++|++.+++++.++|+++.++..+|-++..+|++++|+..+++++...|+++
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~   63 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP   63 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence            34678899999999999999999999999999999999999999999999999999998753

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.67  E-value=6.9e-07  Score=76.26  Aligned_cols=102  Identities=13%  Similarity=0.030  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHH-HHcCCHHHHHHHHHHHhcccCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhh
Q 029491           22 DFIFGILAFSL-LELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN   97 (192)
Q Consensus        22 ~~~~~~laf~L-~e~g~~~eAe~~~rrALaL~P~d---a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~   97 (192)
                      .......|+.+ ...|+|++|...+++.+...|++   +.++..+|-+++.+|++++|+..+++.+..+|+++.  ....
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~--~~dA  219 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK--AADA  219 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc--hhHH
Confidence            35566777777 56799999999999999999999   579999999999999999999999999999999764  5667


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           98 WWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        98 ~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .+.+|.++..+| ++++|.+.|++.|...
T Consensus       220 l~klg~~~~~~g-~~~~A~~~~~~vi~~y  247 (263)
T PRK10803        220 MFKVGVIMQDKG-DTAKAKAVYQQVIKKY  247 (263)
T ss_pred             HHHHHHHHHHcC-CHHHHHHHHHHHHHHC
Confidence            778999999998 9999999999998875

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.67  E-value=4.6e-08  Score=68.53  Aligned_cols=81  Identities=19%  Similarity=0.214  Sum_probs=72.6

Q ss_pred             CCChHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQ--EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQF   78 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~--~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~   78 (192)
                      .|++..|+..+++++...|.  +..++..+|.++...|+|++|...+++ +..+|.++..+.-+|.++..+|+++||+..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            37899999999999999985  455666699999999999999999999 999999999999999999999999999999


Q ss_pred             HHHh
Q 029491           79 MEEC   82 (192)
Q Consensus        79 ~~~a   82 (192)
                      ++++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            9875

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=2.5e-07  Score=85.30  Aligned_cols=119  Identities=13%  Similarity=0.206  Sum_probs=101.7

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----ccCCCH-H--HHHHHHHHHHhcCCHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK----INKHDC-W--SQHALCHVLQHDCCFKE   74 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALa----L~P~da-~--A~h~lahvl~~~Gr~~e   74 (192)
                      +...-|-..+.+|+.+.|.||.++.-+|.+--+.+.|.+|...++.+|+    ..+..+ |  .+.++||++..+++.+|
T Consensus       394 ~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e  473 (611)
T KOG1173|consen  394 NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE  473 (611)
T ss_pred             ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence            4556677788889999999999999999888888999999999999983    333332 2  37899999999999999


Q ss_pred             HHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           75 AVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        75 ai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ||..+++++.+.|.+.   ..|..  +|..|..+| ++|.|+..|.++++..
T Consensus       474 AI~~~q~aL~l~~k~~---~~~as--ig~iy~llg-nld~Aid~fhKaL~l~  519 (611)
T KOG1173|consen  474 AIDYYQKALLLSPKDA---STHAS--IGYIYHLLG-NLDKAIDHFHKALALK  519 (611)
T ss_pred             HHHHHHHHHHcCCCch---hHHHH--HHHHHHHhc-ChHHHHHHHHHHHhcC
Confidence            9999999999999965   57777  999999999 9999999999999985

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.65  E-value=8e-08  Score=64.11  Aligned_cols=58  Identities=21%  Similarity=0.213  Sum_probs=53.8

Q ss_pred             HHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCC
Q 029491           32 LLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC   89 (192)
Q Consensus        32 L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~   89 (192)
                      |.+.|++++|++.+++++..+|+++.+...++.++..+|++++|...+++.+...|++
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~   58 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN   58 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence            4688999999999999999999999999999999999999999999999999998884

...

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.61  E-value=6.6e-07  Score=87.06  Aligned_cols=118  Identities=5%  Similarity=-0.060  Sum_probs=101.4

Q ss_pred             CChHHHHHHHHhhcCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQED-FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~-~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      |++.+|++.+++++..+|.++ .++ .+...+...|++++|+..+++++.-+|....+.-++|.++..+|++++|++.++
T Consensus        48 Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~  126 (822)
T PRK14574         48 GDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQ  126 (822)
T ss_pred             CCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            899999999999999999995 444 777778888999999999999995555666666666889999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ++++..|+++.     ..-.++..+.+.| ++++|+..+++.+...
T Consensus       127 kaL~~dP~n~~-----~l~gLa~~y~~~~-q~~eAl~~l~~l~~~d  166 (822)
T PRK14574        127 SSLKKDPTNPD-----LISGMIMTQADAG-RGGVVLKQATELAERD  166 (822)
T ss_pred             HHHhhCCCCHH-----HHHHHHHHHhhcC-CHHHHHHHHHHhcccC
Confidence            99999999754     2235889999998 9999999999888764

>PRK15331 chaperone protein SicA; Provisional

Probab=98.60  E-value=5.7e-07  Score=71.70  Aligned_cols=98  Identities=12%  Similarity=-0.001  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHH
Q 029491           22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHV  101 (192)
Q Consensus        22 ~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~Whl  101 (192)
                      -....-+|+-+...|++++|+..++-...++|.++.=+..||-|++.++++++|+..|..+.-+.+++|.     ...|.
T Consensus        37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~-----p~f~a  111 (165)
T PRK15331         37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR-----PVFFT  111 (165)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC-----ccchH
Confidence            3455566778899999999999999999999999999999999999999999999999999999888764     23469


Q ss_pred             HHHHHhCCCCHHHHHHHHHHhhhh
Q 029491          102 ALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus       102 Al~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      |.+++.+| +.++|...|..++..
T Consensus       112 gqC~l~l~-~~~~A~~~f~~a~~~  134 (165)
T PRK15331        112 GQCQLLMR-KAAKARQCFELVNER  134 (165)
T ss_pred             HHHHHHhC-CHHHHHHHHHHHHhC
Confidence            99999999 999999999999986

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.58  E-value=9.2e-07  Score=67.12  Aligned_cols=84  Identities=19%  Similarity=0.162  Sum_probs=75.9

Q ss_pred             CCChHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC---CHHHHHHHHHHHHhcCCHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKH---DCWSQHALCHVLQHDCCFKE   74 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~---~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~---da~A~h~lahvl~~~Gr~~e   74 (192)
                      +|+.++|+..+++++....+.   ..++..+|.++...|++++|+...++++.-.|+   +......++.++...||++|
T Consensus        14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~e   93 (120)
T PF12688_consen   14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKE   93 (120)
T ss_pred             cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHH
Confidence            599999999999999975433   568888999999999999999999999999899   88888899999999999999


Q ss_pred             HHHHHHHhHh
Q 029491           75 AVQFMEECSS   84 (192)
Q Consensus        75 ai~~~~~a~~   84 (192)
                      |+.++-.++.
T Consensus        94 Al~~~l~~la  103 (120)
T PF12688_consen   94 ALEWLLEALA  103 (120)
T ss_pred             HHHHHHHHHH
Confidence            9999987774

>TIGR00540 hemY_coli hemY protein

Probab=98.57  E-value=5.4e-06  Score=74.28  Aligned_cols=118  Identities=11%  Similarity=0.036  Sum_probs=104.8

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC-WSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da-~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      |++..|+..+.++....|+....+-..|-+..++|++++|.+.+.++.+..|++. .+.-+.+.++..+|++++|++.++
T Consensus        98 g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~  177 (409)
T TIGR00540        98 GDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVD  177 (409)
T ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            8999999999999999888877777889999999999999999999999999986 466667999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      ++.+..|+++.   ....  ++..++..| +++++.+.+++....
T Consensus       178 ~l~~~~P~~~~---~l~l--l~~~~~~~~-d~~~a~~~l~~l~k~  216 (409)
T TIGR00540       178 KLLEMAPRHKE---VLKL--AEEAYIRSG-AWQALDDIIDNMAKA  216 (409)
T ss_pred             HHHHhCCCCHH---HHHH--HHHHHHHHh-hHHHHHHHHHHHHHc
Confidence            99999999753   3333  888899998 999999999887765

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.56  E-value=1.2e-06  Score=78.23  Aligned_cols=115  Identities=13%  Similarity=0.098  Sum_probs=96.3

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|+.++|...+++++.. |.++.....++.  ...++.+++.+.+++.++.+|+|+..+.++|.++..+|++++|.+.++
T Consensus       276 ~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~--l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le  352 (398)
T PRK10747        276 CDDHDTAQQIILDGLKR-QYDERLVLLIPR--LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFR  352 (398)
T ss_pred             CCCHHHHHHHHHHHHhc-CCCHHHHHHHhh--ccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            48889999999999994 445544444443  345999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      +++...|+..    .+..  +|.++-..| +.++|..+|.+.+..
T Consensus       353 ~al~~~P~~~----~~~~--La~~~~~~g-~~~~A~~~~~~~l~~  390 (398)
T PRK10747        353 AALKQRPDAY----DYAW--LADALDRLH-KPEEAAAMRRDGLML  390 (398)
T ss_pred             HHHhcCCCHH----HHHH--HHHHHHHcC-CHHHHHHHHHHHHhh
Confidence            9999988842    3333  888888898 899999999998765

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.56  E-value=8e-08  Score=64.38  Aligned_cols=53  Identities=17%  Similarity=0.321  Sum_probs=51.4

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcccC
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINK   53 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g-~~~eAe~~~rrALaL~P   53 (192)
                      .|++++|+..+.+++..+|+++.++.++|.++.+.| ++++|++.+++|++++|
T Consensus        16 ~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   16 QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            488999999999999999999999999999999999 79999999999999998

...

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.54  E-value=3e-07  Score=84.77  Aligned_cols=88  Identities=18%  Similarity=0.171  Sum_probs=85.3

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |+++++.++++.||...|.|.-.++-||-+|.-..+.+||+.+|+|||.|.|+..-+..+||-.+.-+|.++||+.++-+
T Consensus       444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~  523 (579)
T KOG1125|consen  444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE  523 (579)
T ss_pred             hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhccCC
Q 029491           82 CSSTWSSC   89 (192)
Q Consensus        82 a~~~~p~~   89 (192)
                      ++.+.+..
T Consensus       524 AL~mq~ks  531 (579)
T KOG1125|consen  524 ALSMQRKS  531 (579)
T ss_pred             HHHhhhcc
Confidence            99888774

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.50  E-value=5e-07  Score=81.90  Aligned_cols=72  Identities=11%  Similarity=0.048  Sum_probs=64.4

Q ss_pred             ccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           51 INKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        51 L~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      -+|++++++.++|.++..+|+++||++.+++++.++|++..  ....+.++|.+|..+| ++++|++.|+++|..
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae--A~~A~yNLAcaya~LG-r~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE--AQAAYYNKACCHAYRE-EGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH--HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence            57999999999999999999999999999999999999642  1134567999999999 999999999999986

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.50  E-value=5.2e-07  Score=60.94  Aligned_cols=62  Identities=15%  Similarity=0.233  Sum_probs=58.4

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALC   63 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~la   63 (192)
                      +++++++..+++++..+|+++.++..+|.++..+|++++|.+.++++++++|+++.+.-..+
T Consensus         9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    9 EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999998766544

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.50  E-value=3.3e-06  Score=65.58  Aligned_cols=101  Identities=12%  Similarity=0.017  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHH
Q 029491           23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVA  102 (192)
Q Consensus        23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlA  102 (192)
                      -.+-..|.++.|.|+++.|++.+.+||.+.|..+.++.+.+.++-.+|+.++|++-+++++++..+... -.+|.+-..|
T Consensus        44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~tr-tacqa~vQRg  122 (175)
T KOG4555|consen   44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTR-TACQAFVQRG  122 (175)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccch-HHHHHHHHHH
Confidence            445677889999999999999999999999999999999999999999999999999999988655332 2566666799


Q ss_pred             HHHHhCCCCHHHHHHHHHHhhhh
Q 029491          103 LCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus       103 l~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      +.|-.+| +-|.|.+-|+.+-..
T Consensus       123 ~lyRl~g-~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  123 LLYRLLG-NDDAARADFEAAAQL  144 (175)
T ss_pred             HHHHHhC-chHHHHHhHHHHHHh
Confidence            9998888 889999999988776

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.49  E-value=2.7e-07  Score=61.48  Aligned_cols=64  Identities=25%  Similarity=0.253  Sum_probs=58.7

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCH   64 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lah   64 (192)
                      .|++++|+..+++++..+|+++.+...+|.++.+.|++++|++..++++..+|+++..+..++-
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            4889999999999999999999999999999999999999999999999999999877766653

...

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.49  E-value=2.2e-07  Score=63.84  Aligned_cols=67  Identities=18%  Similarity=0.208  Sum_probs=51.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhh
Q 029491           19 QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN-------KHDCWSQHALCHVLQHDCCFKEAVQFMEECSST   85 (192)
Q Consensus        19 p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~-------P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~   85 (192)
                      |+-+.++..+|.++.++|++++|+..+++|+.+.       |.-+.+++++|.++..+|++++|+.++++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3445677888888888888888888888888763       334677888888888888888888888888765

...

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.47  E-value=3.6e-07  Score=56.83  Aligned_cols=43  Identities=26%  Similarity=0.264  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHH
Q 029491           22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCH   64 (192)
Q Consensus        22 ~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lah   64 (192)
                      |.++.++|.++.+.|++++|++.++++|+++|+|+.++..+|.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            3577899999999999999999999999999999999999875

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.41  E-value=8.7e-07  Score=77.78  Aligned_cols=155  Identities=15%  Similarity=0.121  Sum_probs=124.4

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      .+...|+-.+...+...|.+...+.-.|-++++++++++|.+.+++++.++|.+..+...+|..+++.|+++=|+.+|++
T Consensus       270 dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRR  349 (478)
T KOG1129|consen  270 DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRR  349 (478)
T ss_pred             ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHH
Confidence            35678889999999999999998888999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHH------------HHHHHHHHHhh
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVY------------LNALGLLLRVY  149 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~------------~da~sLL~Rl~  149 (192)
                      -+..-..+|.     ..-++|++.+-.+ ++|-++..|.+++..-..+.  .-++..            .+.+.--|||.
T Consensus       350 iLqmG~~spe-----Lf~NigLCC~yaq-Q~D~~L~sf~RAlstat~~~--~aaDvWYNlg~vaV~iGD~nlA~rcfrla  421 (478)
T KOG1129|consen  350 ILQMGAQSPE-----LFCNIGLCCLYAQ-QIDLVLPSFQRALSTATQPG--QAADVWYNLGFVAVTIGDFNLAKRCFRLA  421 (478)
T ss_pred             HHHhcCCChH-----HHhhHHHHHHhhc-chhhhHHHHHHHHhhccCcc--hhhhhhhccceeEEeccchHHHHHHHHHH
Confidence            9988766543     3446999999987 99999999999998742111  111110            25566678888


Q ss_pred             hcCcccchhchHHHHH
Q 029491          150 VRGELDVFGNRLKVLA  165 (192)
Q Consensus       150 l~g~~~~~~~rw~~l~  165 (192)
                      +.... +-++-...|+
T Consensus       422 L~~d~-~h~ealnNLa  436 (478)
T KOG1129|consen  422 LTSDA-QHGEALNNLA  436 (478)
T ss_pred             hccCc-chHHHHHhHH
Confidence            87654 3455554444

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.41  E-value=5.8e-06  Score=77.39  Aligned_cols=143  Identities=13%  Similarity=0.118  Sum_probs=98.4

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      ||+..+|.+.+++++..++....-+-.+|.......+|++|+.+++.||.+.|+|-..+..++......|+.+--...-.
T Consensus        54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~  133 (700)
T KOG1156|consen   54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRN  133 (700)
T ss_pred             ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            46667777777777776666666666666666667777777777777777777777777777777766666666555555


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcC
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRG  152 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g  152 (192)
                      +-+.+.|...     -+|--.|+++...| +|..|..+.+.-+....   .+++..++.-.-++|+|-...-
T Consensus       134 ~LLql~~~~r-----a~w~~~Avs~~L~g-~y~~A~~il~ef~~t~~---~~~s~~~~e~se~~Ly~n~i~~  196 (700)
T KOG1156|consen  134 QLLQLRPSQR-----ASWIGFAVAQHLLG-EYKMALEILEEFEKTQN---TSPSKEDYEHSELLLYQNQILI  196 (700)
T ss_pred             HHHHhhhhhH-----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhc---cCCCHHHHHHHHHHHHHHHHHH
Confidence            5555554421     14557899998888 99999999988776631   2345567777778888866543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.40  E-value=2.7e-06  Score=72.60  Aligned_cols=89  Identities=10%  Similarity=-0.015  Sum_probs=82.1

Q ss_pred             CChHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---HHHHHHHHHHHHhcCCHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEA   75 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~---~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---a~A~h~lahvl~~~Gr~~ea   75 (192)
                      |++++|+..+++.+..+|+++   .++..+|.++...|++++|...+++.+...|++   +.++..+|.++..+|+.++|
T Consensus       157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A  236 (263)
T PRK10803        157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKA  236 (263)
T ss_pred             CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHH
Confidence            789999999999999999984   699999999999999999999999999988885   67777789999999999999


Q ss_pred             HHHHHHhHhhccCCC
Q 029491           76 VQFMEECSSTWSSCS   90 (192)
Q Consensus        76 i~~~~~a~~~~p~~~   90 (192)
                      +..+++.++.+|+..
T Consensus       237 ~~~~~~vi~~yP~s~  251 (263)
T PRK10803        237 KAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHHHHCcCCH
Confidence            999999999999853

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.39  E-value=7.4e-06  Score=73.76  Aligned_cols=110  Identities=16%  Similarity=0.229  Sum_probs=98.2

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      ++.+.|+..+++....+|+   +...++-++..+++-.+|.+...++|..+|+|+..++..+..+..+++.+.|+...++
T Consensus       183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~  259 (395)
T PF09295_consen  183 QRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKK  259 (395)
T ss_pred             ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            6788999999998888876   4556788888899999999999999999999999999999999999999999999999


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHH
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD  120 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd  120 (192)
                      +....|..     .-.|-.||.+|+.+| ++++|+....
T Consensus       260 av~lsP~~-----f~~W~~La~~Yi~~~-d~e~ALlaLN  292 (395)
T PF09295_consen  260 AVELSPSE-----FETWYQLAECYIQLG-DFENALLALN  292 (395)
T ss_pred             HHHhCchh-----HHHHHHHHHHHHhcC-CHHHHHHHHh
Confidence            99999984     236668999999999 9999997663

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=4.2e-06  Score=72.11  Aligned_cols=91  Identities=13%  Similarity=0.065  Sum_probs=83.6

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG---QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ   77 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g---~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~   77 (192)
                      +|+...|...+++|+.+.|+++..++-+|-+|..+.   .-.++..++++||+++|+|+-+..-+|....++|++++|+.
T Consensus       169 ~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~  248 (287)
T COG4235         169 LGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAA  248 (287)
T ss_pred             hcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHH
Confidence            488999999999999999999999999999886654   45679999999999999999999999999999999999999


Q ss_pred             HHHHhHhhccCCCC
Q 029491           78 FMEECSSTWSSCSS   91 (192)
Q Consensus        78 ~~~~a~~~~p~~~~   91 (192)
                      ..+.-++..|.+.+
T Consensus       249 ~Wq~lL~~lp~~~~  262 (287)
T COG4235         249 AWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHHHhcCCCCCc
Confidence            99999999888643

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.34  E-value=3.6e-06  Score=77.85  Aligned_cols=126  Identities=17%  Similarity=0.237  Sum_probs=104.2

Q ss_pred             CCChHHHHHHHHhhcCC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc--------CCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPY--------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN--------KHDCWSQHALCH   64 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~--------~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~--------P~da~A~h~lah   64 (192)
                      +|++.+|...+++|+..        +|.-+.++.++|..+...|+|++|+..+++|+.+-        |.-+-.+-+++-
T Consensus       254 ~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~  333 (508)
T KOG1840|consen  254 LGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAA  333 (508)
T ss_pred             hccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence            46788899999998874        45667899999999999999999999999999865        556677889999


Q ss_pred             HHHhcCCHHHHHHHHHHhHhhccCCCC---cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhh
Q 029491           65 VLQHDCCFKEAVQFMEECSSTWSSCSS---FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL  127 (192)
Q Consensus        65 vl~~~Gr~~eai~~~~~a~~~~p~~~~---~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~  127 (192)
                      ++..++++++++..+.+++.+.-+-++   .+..+..=++|-.++..| +|++|..+|+++|....
T Consensus       334 ~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~g-k~~ea~~~~k~ai~~~~  398 (508)
T KOG1840|consen  334 ILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMG-KYKEAEELYKKAIQILR  398 (508)
T ss_pred             HHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHH
Confidence            999999999999999999976543221   112334446999999999 99999999999999863

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.33  E-value=3.3e-06  Score=77.17  Aligned_cols=120  Identities=10%  Similarity=0.108  Sum_probs=99.6

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      ++++++|..-+++++.++|++.+.+..+++++..++++++++..++.+..-=|+-+....-.|.++..+++|+.|+..|+
T Consensus       407 L~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD  486 (606)
T KOG0547|consen  407 LQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYD  486 (606)
T ss_pred             HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccC------CCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           81 ECSSTWSS------CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        81 ~a~~~~p~------~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      .++++-|.      +.. ...    |.|+..+.=.+++.+|+.+.+++|..
T Consensus       487 ~ai~LE~~~~~~~v~~~-plV----~Ka~l~~qwk~d~~~a~~Ll~KA~e~  532 (606)
T KOG0547|consen  487 KAIELEPREHLIIVNAA-PLV----HKALLVLQWKEDINQAENLLRKAIEL  532 (606)
T ss_pred             HHHhhccccccccccch-hhh----hhhHhhhchhhhHHHHHHHHHHHHcc
Confidence            99999998      322 122    34444333112566666666666554

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.32  E-value=1.1e-05  Score=72.04  Aligned_cols=117  Identities=9%  Similarity=0.043  Sum_probs=94.0

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHH-HHHHHhcCCHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGIL-AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHAL-CHVLQHDCCFKEAVQFM   79 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~l-af~L~e~g~~~eAe~~~rrALaL~P~da~A~h~l-ahvl~~~Gr~~eai~~~   79 (192)
                      |++..|.....+.-.. ++.+..+..+ +.+-.+.|++++|.+.+++|.+.+|++..+...+ +.++..+|++++|++.+
T Consensus        98 Gd~~~A~k~l~~~~~~-~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l  176 (398)
T PRK10747         98 GDYQQVEKLMTRNADH-AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV  176 (398)
T ss_pred             CCHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            8888888766664333 3345555555 4455899999999999999999999998776544 89999999999999999


Q ss_pred             HHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        80 ~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      +++.+..|+++.   ...  .++..++..| ++++|++++++....
T Consensus       177 ~~~~~~~P~~~~---al~--ll~~~~~~~g-dw~~a~~~l~~l~k~  216 (398)
T PRK10747        177 DKLLEVAPRHPE---VLR--LAEQAYIRTG-AWSSLLDILPSMAKA  216 (398)
T ss_pred             HHHHhcCCCCHH---HHH--HHHHHHHHHH-hHHHHHHHHHHHHHc
Confidence            999999999653   333  3888889998 999999999877755

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=2.7e-06  Score=78.07  Aligned_cols=91  Identities=14%  Similarity=0.115  Sum_probs=87.6

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++..|+..+.+++..+|+|+-++++.|.++...|.+.+|.+-+..+++|||+..-++..-|+++...-+++++++.|+
T Consensus       371 ~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~  450 (539)
T KOG0548|consen  371 KGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQ  450 (539)
T ss_pred             ccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCC
Q 029491           81 ECSSTWSSCSS   91 (192)
Q Consensus        81 ~a~~~~p~~~~   91 (192)
                      +++..+|.+..
T Consensus       451 eale~dp~~~e  461 (539)
T KOG0548|consen  451 EALELDPSNAE  461 (539)
T ss_pred             HHHhcCchhHH
Confidence            99999988654

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.31  E-value=1.7e-05  Score=73.52  Aligned_cols=125  Identities=14%  Similarity=0.075  Sum_probs=101.1

Q ss_pred             CCChHHHHHHHHhhcCCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc--------CCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYN--------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN--------KHDCWSQHALCH   64 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~--------p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~--------P~da~A~h~lah   64 (192)
                      .|++++|...+++|+.+.        |+-+..++.++.+++.++++++|+..+++++++-        |+-+--..++|.
T Consensus       296 ~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~  375 (508)
T KOG1840|consen  296 QGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAE  375 (508)
T ss_pred             cCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence            388999999999998752        3446788889999999999999999999999864        344667789999


Q ss_pred             HHHhcCCHHHHHHHHHHhHhhccCCCC---cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           65 VLQHDCCFKEAVQFMEECSSTWSSCSS---FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        65 vl~~~Gr~~eai~~~~~a~~~~p~~~~---~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .+.++|+++||.+++++++...-....   ....-.-||+|..+.+++ ++++|-.+|++.+...
T Consensus       376 l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k-~~~~a~~l~~~~~~i~  439 (508)
T KOG1840|consen  376 LYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELK-KYEEAEQLFEEAKDIM  439 (508)
T ss_pred             HHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhc-ccchHHHHHHHHHHHH
Confidence            999999999999999999976532111   012335689999999988 9999999999887664

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.30  E-value=1.1e-05  Score=68.48  Aligned_cols=119  Identities=18%  Similarity=0.159  Sum_probs=96.1

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |+..-|..++.+.-...|.+.-+..+.|.-|+-+|.+++|++.+.+-|+=||+|.-.+-..--++-.+|+.-++|.-+..
T Consensus        66 ~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~  145 (289)
T KOG3060|consen   66 GRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNE  145 (289)
T ss_pred             cchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            55666777777766666899999999999999999999999999999999988888888777788888888888888888


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      -++..+.++     ..||-+|-.|+..| +|+.|.=+|+..+-..
T Consensus       146 YL~~F~~D~-----EAW~eLaeiY~~~~-~f~kA~fClEE~ll~~  184 (289)
T KOG3060|consen  146 YLDKFMNDQ-----EAWHELAEIYLSEG-DFEKAAFCLEELLLIQ  184 (289)
T ss_pred             HHHHhcCcH-----HHHHHHHHHHHhHh-HHHHHHHHHHHHHHcC
Confidence            888877753     36777888888887 7888888888877653

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.30  E-value=5.7e-07  Score=53.30  Aligned_cols=34  Identities=18%  Similarity=0.326  Sum_probs=30.6

Q ss_pred             HHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491           44 AAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ   77 (192)
Q Consensus        44 ~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~   77 (192)
                      ++++||+++|+|+.+++++|.++..+|+.++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3689999999999999999999999999999863

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.28  E-value=1.2e-05  Score=77.38  Aligned_cols=88  Identities=15%  Similarity=0.118  Sum_probs=51.9

Q ss_pred             HHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCC
Q 029491           32 LLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSP  111 (192)
Q Consensus        32 L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~  111 (192)
                      +.-.|++++|++++...+..+|.++.++.+||.|++.+|+.++++-+.--|.-++|.+..     .|-++|-...++| .
T Consensus       149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e-----~W~~ladls~~~~-~  222 (895)
T KOG2076|consen  149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE-----LWKRLADLSEQLG-N  222 (895)
T ss_pred             HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH-----HHHHHHHHHHhcc-c
Confidence            344466666666666666666666666666666666666666666666666666655432     4445555555555 5


Q ss_pred             HHHHHHHHHHhhhh
Q 029491          112 MRKVLEIYDNHIWK  125 (192)
Q Consensus       112 ~deAl~~yd~~i~~  125 (192)
                      +++|.-+|.++|..
T Consensus       223 i~qA~~cy~rAI~~  236 (895)
T KOG2076|consen  223 INQARYCYSRAIQA  236 (895)
T ss_pred             HHHHHHHHHHHHhc
Confidence            66666666666655

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.28  E-value=4.1e-05  Score=64.49  Aligned_cols=124  Identities=8%  Similarity=-0.035  Sum_probs=100.8

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHhcccCCCH---HHHHHHHHHHHhcC-----
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIF---GILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDC-----   70 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~---~~laf~L~e~g~~~eAe~~~rrALaL~P~da---~A~h~lahvl~~~G-----   70 (192)
                      |++.+|...++++++..|+.+++.   .++|.++...++|++|...+++.+.+.|+++   ++..-+|.+....+     
T Consensus        46 g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~  125 (243)
T PRK10866         46 GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQ  125 (243)
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhh
Confidence            899999999999999999988665   8899999999999999999999999999886   55566665543333     


Q ss_pred             -------------CHHHHHHHHHHhHhhccCCCCcch------------hhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           71 -------------CFKEAVQFMEECSSTWSSCSSFMY------------THNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        71 -------------r~~eai~~~~~a~~~~p~~~~~~~------------~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                                   ...+|+..+++.++..|++.-...            +..-++.|-+|+..| .|..|+..++..|..
T Consensus       126 ~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~-~y~AA~~r~~~v~~~  204 (243)
T PRK10866        126 GFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG-AYVAVVNRVEQMLRD  204 (243)
T ss_pred             hccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-chHHHHHHHHHHHHH
Confidence                         146889999999999999642100            112346888999998 999999999999988


Q ss_pred             h
Q 029491          126 E  126 (192)
Q Consensus       126 ~  126 (192)
                      -
T Consensus       205 Y  205 (243)
T PRK10866        205 Y  205 (243)
T ss_pred             C
Confidence            6

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=1e-05  Score=74.77  Aligned_cols=142  Identities=13%  Similarity=0.109  Sum_probs=100.3

Q ss_pred             ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491            3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC   82 (192)
Q Consensus         3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a   82 (192)
                      .+++++..+.+|-.+-|+..--...+|.-+..++.+..|+..+.+|++++|+||-..|-+|.|-+..+.+.+|+.+++.+
T Consensus       361 EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~  440 (611)
T KOG1173|consen  361 EHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKA  440 (611)
T ss_pred             hHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHH
Confidence            34444444444444444443333445555666788888888999999999999999999999999999999999999999


Q ss_pred             HhhccCCC---CcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcCcc
Q 029491           83 SSTWSSCS---SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGEL  154 (192)
Q Consensus        83 ~~~~p~~~---~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g~~  154 (192)
                      +.-=+...   .+ +.-.+-++|..+-.++ .+++|+..|++++...  |      .+..-.+|+=|.-.+.|-.
T Consensus       441 l~~ik~~~~e~~~-w~p~~~NLGH~~Rkl~-~~~eAI~~~q~aL~l~--~------k~~~~~asig~iy~llgnl  505 (611)
T KOG1173|consen  441 LEVIKSVLNEKIF-WEPTLNNLGHAYRKLN-KYEEAIDYYQKALLLS--P------KDASTHASIGYIYHLLGNL  505 (611)
T ss_pred             HHHhhhccccccc-hhHHHHhHHHHHHHHh-hHHHHHHHHHHHHHcC--C------CchhHHHHHHHHHHHhcCh
Confidence            92211111   11 2112336999999998 9999999999999884  2      2344466666666666653

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.25  E-value=6.1e-06  Score=80.02  Aligned_cols=139  Identities=14%  Similarity=0.141  Sum_probs=111.3

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      +....|+.++.+||..+|-+-|+-+=.|-+|.+.|++.+|..++.+..+---+++.++-|+|||+..+|++..||..|+.
T Consensus       626 k~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~  705 (1018)
T KOG2002|consen  626 KHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYEN  705 (1018)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999998887778999999999999999999999999999


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhh
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVY  149 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~  149 (192)
                      +++..-..+.   .++--=||-++++.| .+.++....-.++...  |++   +...-|-+-.+.++.
T Consensus       706 ~lkkf~~~~~---~~vl~~Lara~y~~~-~~~eak~~ll~a~~~~--p~~---~~v~FN~a~v~kkla  764 (1018)
T KOG2002|consen  706 CLKKFYKKNR---SEVLHYLARAWYEAG-KLQEAKEALLKARHLA--PSN---TSVKFNLALVLKKLA  764 (1018)
T ss_pred             HHHHhcccCC---HHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhC--Ccc---chHHhHHHHHHHHHH
Confidence            9965443222   233333999999998 8999999888877763  332   123335444455443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.22  E-value=5.3e-05  Score=73.15  Aligned_cols=120  Identities=11%  Similarity=0.070  Sum_probs=112.3

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|+.++|...+..++..+|..+.++.++|-+++++|+.+.+....--|--|||+|..-|..++--...+|..++|+-.|.
T Consensus       152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~  231 (895)
T KOG2076|consen  152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS  231 (895)
T ss_pred             hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +|+...|.+-.     .-|..+..+...| ++-+|..-|.+.+...
T Consensus       232 rAI~~~p~n~~-----~~~ers~L~~~~G-~~~~Am~~f~~l~~~~  271 (895)
T KOG2076|consen  232 RAIQANPSNWE-----LIYERSSLYQKTG-DLKRAMETFLQLLQLD  271 (895)
T ss_pred             HHHhcCCcchH-----HHHHHHHHHHHhC-hHHHHHHHHHHHHhhC
Confidence            99999998532     6678899899999 8999999998888763

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.22  E-value=6.9e-06  Score=78.06  Aligned_cols=89  Identities=19%  Similarity=0.102  Sum_probs=84.0

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEE--AAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM   79 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~--~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~   79 (192)
                      |...+|...+.-++.++|+++-....+|-.+.+.|+-.-|+.  +.+-|+.++|.++.||..+|+|+..+|+.++|.+.|
T Consensus       698 ~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf  777 (799)
T KOG4162|consen  698 GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECF  777 (799)
T ss_pred             HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHH
Confidence            678899999999999999999999999999999997766777  999999999999999999999999999999999999


Q ss_pred             HHhHhhccCCC
Q 029491           80 EECSSTWSSCS   90 (192)
Q Consensus        80 ~~a~~~~p~~~   90 (192)
                      ..++.+.+.+|
T Consensus       778 ~aa~qLe~S~P  788 (799)
T KOG4162|consen  778 QAALQLEESNP  788 (799)
T ss_pred             HHHHhhccCCC
Confidence            99999988875

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.18  E-value=7.3e-06  Score=72.45  Aligned_cols=103  Identities=16%  Similarity=0.040  Sum_probs=93.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhh
Q 029491           18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN   97 (192)
Q Consensus        18 ~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~   97 (192)
                      +|.+..-|.-+|-.+...|++..|...+..|+++||++-.|....|.|+...|+.+.|+.-+++.+.+-|+.   +.+..
T Consensus        34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF---~~ARi  110 (504)
T KOG0624|consen   34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF---MAARI  110 (504)
T ss_pred             CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH---HHHHH
Confidence            567788888899999999999999999999999999999999999999999999999999999999998874   45555


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           98 WWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        98 ~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .  .|..+|..| ++|+|.+-|+..+.-+
T Consensus       111 Q--Rg~vllK~G-ele~A~~DF~~vl~~~  136 (504)
T KOG0624|consen  111 Q--RGVVLLKQG-ELEQAEADFDQVLQHE  136 (504)
T ss_pred             H--hchhhhhcc-cHHHHHHHHHHHHhcC
Confidence            4  888999999 9999999999998875

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=1.9e-05  Score=71.03  Aligned_cols=119  Identities=17%  Similarity=0.079  Sum_probs=99.2

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHH------------HHHHHHHHHcCCHHHHHHHHHHHhcccCCCH----HHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIF------------GILAFSLLELGQMSDAEEAAKKGLKINKHDC----WSQHALCHV   65 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~------------~~laf~L~e~g~~~eAe~~~rrALaL~P~da----~A~h~lahv   65 (192)
                      ++.+.+...++++|.++|+....-            -.-|.-+...|.|..|.+.+-.||.++|++.    --+.++|.|
T Consensus       217 ~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v  296 (486)
T KOG0550|consen  217 DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALV  296 (486)
T ss_pred             cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhh
Confidence            456778888999999999875333            2335556679999999999999999999864    457899999


Q ss_pred             HHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           66 LQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        66 l~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ....||.+|||..++.++.++|..   +.+.  --.|.+|+.++ ++++|++-|++++...
T Consensus       297 ~~rLgrl~eaisdc~~Al~iD~sy---ikal--l~ra~c~l~le-~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  297 NIRLGRLREAISDCNEALKIDSSY---IKAL--LRRANCHLALE-KWEEAVEDYEKAMQLE  351 (486)
T ss_pred             hcccCCchhhhhhhhhhhhcCHHH---HHHH--HHHHHHHHHHH-HHHHHHHHHHHHHhhc
Confidence            999999999999999999998774   2332  24899999998 9999999999999885

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.16  E-value=5.1e-05  Score=69.17  Aligned_cols=102  Identities=12%  Similarity=0.058  Sum_probs=90.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhH
Q 029491           19 QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNW   98 (192)
Q Consensus        19 p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~   98 (192)
                      |....+..-.|....+.|.+++|+...+.-++..|+|+|.+-..+.++...++.++|++.+++++.+.|..+-     .+
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~-----l~  377 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPL-----LQ  377 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccH-----HH
Confidence            4555666666778889999999999999999999999999999999999999999999999999999999642     44


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           99 WHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        99 WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      -.+|..++..| ++.+|+.+..+.+...
T Consensus       378 ~~~a~all~~g-~~~eai~~L~~~~~~~  404 (484)
T COG4783         378 LNLAQALLKGG-KPQEAIRILNRYLFND  404 (484)
T ss_pred             HHHHHHHHhcC-ChHHHHHHHHHHhhcC
Confidence            46999999998 9999999999888775

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=1.1e-05  Score=71.95  Aligned_cols=120  Identities=14%  Similarity=0.018  Sum_probs=96.0

Q ss_pred             CChHHHHHHHHhhcCCCC----CC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQ----QE-----------DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVL   66 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p----~~-----------~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl   66 (192)
                      |++..|...++||+..-+    .+           --+|.++|.++...++|.+|+..+.++|+++|+|+-|+...|.++
T Consensus       222 gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~  301 (397)
T KOG0543|consen  222 GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQAL  301 (397)
T ss_pred             chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence            788889999999877422    11           267899999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           67 QHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        67 ~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ..+|+++.|+..+++++.+.|.+.   ..++.  +..+.-......+..-++|.+...+.
T Consensus       302 l~~~e~~~A~~df~ka~k~~P~Nk---a~~~e--l~~l~~k~~~~~~kekk~y~~mF~k~  356 (397)
T KOG0543|consen  302 LALGEYDLARDDFQKALKLEPSNK---AARAE--LIKLKQKIREYEEKEKKMYANMFAKL  356 (397)
T ss_pred             HhhccHHHHHHHHHHHHHhCCCcH---HHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999964   34433  33332222213455578888888774

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.14  E-value=7.8e-06  Score=66.13  Aligned_cols=86  Identities=17%  Similarity=0.125  Sum_probs=71.1

Q ss_pred             hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCC--
Q 029491            4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQM----------SDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC--   71 (192)
Q Consensus         4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~----------~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr--   71 (192)
                      ++.++..++.....+|.|+..+..-|.+|.|..++          ++|+.-+++||.|||+...|+.++|.++..+|.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            56788889999999999999999999999987544          568888999999999999999999999998887  


Q ss_pred             ---------HHHHHHHHHHhHhhccCC
Q 029491           72 ---------FKEAVQFMEECSSTWSSC   89 (192)
Q Consensus        72 ---------~~eai~~~~~a~~~~p~~   89 (192)
                               +++|...+++|.+..|.+
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~n  113 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNN  113 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence                     778888888899999885

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.11  E-value=5.2e-05  Score=73.56  Aligned_cols=125  Identities=11%  Similarity=-0.006  Sum_probs=96.8

Q ss_pred             CCChHHHHHHHHhhcCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC------CHHHHHHHHHHHHhc
Q 029491            1 MGRPDLCFDIIHQVLPYNQQE-----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKH------DCWSQHALCHVLQHD   69 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~-----~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~------da~A~h~lahvl~~~   69 (192)
                      .|+++++....++++...|..     ..+..++|.++...|++++|+..+++++++.+.      ..++...+|.++..+
T Consensus       465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~  544 (903)
T PRK04841        465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ  544 (903)
T ss_pred             CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence            488999999999998854432     246678899999999999999999999987543      246778899999999


Q ss_pred             CCHHHHHHHHHHhHhhccCCCC---cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           70 CCFKEAVQFMEECSSTWSSCSS---FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        70 Gr~~eai~~~~~a~~~~p~~~~---~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      |++++|...+++++..-.....   .......+.+|..++..| ++++|.+.+++.+...
T Consensus       545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G-~~~~A~~~~~~al~~~  603 (903)
T PRK04841        545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA-RLDEAEQCARKGLEVL  603 (903)
T ss_pred             CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc-CHHHHHHHHHHhHHhh
Confidence            9999999999999976433210   011223345788888888 9999999999987753

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=1.3e-05  Score=73.54  Aligned_cols=89  Identities=13%  Similarity=0.081  Sum_probs=86.8

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |+++.+...+..++.++|.+...+++.+-++...|+|++|..-+.+.+.|+|+=+-++...|.++.-.|++++|+..|.+
T Consensus        16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~   95 (539)
T KOG0548|consen   16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSE   95 (539)
T ss_pred             ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhccCCC
Q 029491           82 CSSTWSSCS   90 (192)
Q Consensus        82 a~~~~p~~~   90 (192)
                      -+...|++.
T Consensus        96 GL~~d~~n~  104 (539)
T KOG0548|consen   96 GLEKDPSNK  104 (539)
T ss_pred             HhhcCCchH
Confidence            999999864

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.08  E-value=3.6e-05  Score=75.41  Aligned_cols=117  Identities=13%  Similarity=0.036  Sum_probs=103.2

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH-------------------HHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC-------------------WSQHA   61 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da-------------------~A~h~   61 (192)
                      .|+++++.+.++.++...|+...++.++|+.+.+.+++.+|..+  +++.+-|.+.                   .|+.+
T Consensus        44 ~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~  121 (906)
T PRK14720         44 ENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRT  121 (906)
T ss_pred             cCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHH
Confidence            37889999999999999999999999999999999999998888  8888888888                   99999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           62 LCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        62 lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +|.++...|+.+++.+.|+++++.+|+++.   +-|  ++|-++-+.  +.++|...|.+++..-
T Consensus       122 LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~---aLN--n~AY~~ae~--dL~KA~~m~~KAV~~~  179 (906)
T PRK14720        122 LAEAYAKLNENKKLKGVWERLVKADRDNPE---IVK--KLATSYEEE--DKEKAITYLKKAIYRF  179 (906)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCcccHH---HHH--HHHHHHHHh--hHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999753   233  388877665  7999999999998874

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.08  E-value=7.5e-05  Score=63.51  Aligned_cols=120  Identities=13%  Similarity=0.055  Sum_probs=104.8

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      +|++.+|++.+++.++.+|.|...+--.=-++..+|+--+|++..-.=|..=|+|..|||-++.++...|.++.|+=.++
T Consensus        99 ~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClE  178 (289)
T KOG3060|consen   99 TGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLE  178 (289)
T ss_pred             hhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence            47899999999999999999988887776778889999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCC--CHHHHHHHHHHhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHS--PMRKVLEIYDNHIWK  125 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~--~~deAl~~yd~~i~~  125 (192)
                      +.+=++|.++   ..|-.  +|-.++..||  +++-+...|.+++-.
T Consensus       179 E~ll~~P~n~---l~f~r--lae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  179 ELLLIQPFNP---LYFQR--LAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             HHHHcCCCcH---HHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            9999999864   34443  7777766664  567788889888876

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.07  E-value=5.6e-05  Score=73.32  Aligned_cols=124  Identities=12%  Similarity=0.019  Sum_probs=96.2

Q ss_pred             CCChHHHHHHHHhhcCCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC--------CHHHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQ------EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH--------DCWSQHALCHVL   66 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~------~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~--------da~A~h~lahvl   66 (192)
                      .|++++++..+++++.....      ...++..+|.++...|++++|++.+++++++...        ....+..+|.++
T Consensus       504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  583 (903)
T PRK04841        504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL  583 (903)
T ss_pred             cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence            48999999999998875321      2356778899999999999999999999997432        244566889999


Q ss_pred             HhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           67 QHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        67 ~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      ..+|++++|.+.++++++......+.........+|..++..| ++++|.+.+++....
T Consensus       584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G-~~~~A~~~l~~a~~~  641 (903)
T PRK04841        584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARG-DLDNARRYLNRLENL  641 (903)
T ss_pred             HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence            9999999999999999876543221112333344788888998 999999999998765

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.05  E-value=3.8e-05  Score=59.04  Aligned_cols=82  Identities=16%  Similarity=0.117  Sum_probs=73.0

Q ss_pred             CCChHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ   77 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~---~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~   77 (192)
                      .|++++|...+++++...|+.   +.+...+|.++...|++++|....+. +.-++-.+.+...+|.++..+|+.++|+.
T Consensus        61 ~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~  139 (145)
T PF09976_consen   61 QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARA  139 (145)
T ss_pred             CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHH
Confidence            389999999999999987765   46788899999999999999999866 56677788999999999999999999999


Q ss_pred             HHHHhH
Q 029491           78 FMEECS   83 (192)
Q Consensus        78 ~~~~a~   83 (192)
                      .|++++
T Consensus       140 ~y~~Al  145 (145)
T PF09976_consen  140 AYQKAL  145 (145)
T ss_pred             HHHHhC
Confidence            999874

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=2.7e-05  Score=70.25  Aligned_cols=118  Identities=17%  Similarity=0.192  Sum_probs=97.8

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHH-HHHHHcCCHHH-HHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILA-FSLLELGQMSD-AEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM   79 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~la-f~L~e~g~~~e-Ae~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~   79 (192)
                      |++.||+....-++..-|.++..+..+| .++.+.-...| |...++++|.++|.-.-|+..++..+.+.|+.+++|..+
T Consensus       382 ~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL  461 (564)
T KOG1174|consen  382 KRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLL  461 (564)
T ss_pred             chHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence            4556666666666666677777777775 56666665544 999999999999999999999999999999999999999


Q ss_pred             HHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        80 ~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ++++...|++.    .|+  |+|.+..... .+++++..|-.+++..
T Consensus       462 e~~L~~~~D~~----LH~--~Lgd~~~A~N-e~Q~am~~y~~ALr~d  501 (564)
T KOG1174|consen  462 EKHLIIFPDVN----LHN--HLGDIMRAQN-EPQKAMEYYYKALRQD  501 (564)
T ss_pred             HHHHhhccccH----HHH--HHHHHHHHhh-hHHHHHHHHHHHHhcC
Confidence            99999999974    344  5999988887 8999999999998874

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.04  E-value=7.8e-05  Score=72.58  Aligned_cols=122  Identities=10%  Similarity=0.121  Sum_probs=65.9

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG---QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ   77 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g---~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~   77 (192)
                      ||+...|+..++||+.++|.+..++--||.+.....   -+..|.....+|..+||+||.+..-|+.-++..|+++.++.
T Consensus       212 l~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~  291 (1018)
T KOG2002|consen  212 LGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWH  291 (1018)
T ss_pred             ccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHH
Confidence            355566666666666666666555555555444333   33446666666666666666666666555555555555555


Q ss_pred             HHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        78 ~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      .++.++...-.. + +.++....+|-++-..| +||+|...|-.++..
T Consensus       292 la~~ai~~t~~~-~-~~aes~Y~~gRs~Ha~G-d~ekA~~yY~~s~k~  336 (1018)
T KOG2002|consen  292 LAEHAIKNTENK-S-IKAESFYQLGRSYHAQG-DFEKAFKYYMESLKA  336 (1018)
T ss_pred             HHHHHHHhhhhh-H-HHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHcc
Confidence            555555433221 1 23444444555555555 555555555444433

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.03  E-value=0.00011  Score=68.47  Aligned_cols=123  Identities=15%  Similarity=0.147  Sum_probs=103.6

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      +|++.+|+..+.+|+.+.|..+..+...|-+|...|++.+|.+..+.|-.||+.|-..-.-.+-.+...|+.++|...+.
T Consensus       207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~  286 (517)
T PF12569_consen  207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTAS  286 (517)
T ss_pred             hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HhHhhccC-CCCcchhhhHH---HHHHHHHhCCCCHHHHHHHHHHhhh
Q 029491           81 ECSSTWSS-CSSFMYTHNWW---HVALCYLEGHSPMRKVLEIYDNHIW  124 (192)
Q Consensus        81 ~a~~~~p~-~~~~~~~h~~W---hlAl~~l~~G~~~deAl~~yd~~i~  124 (192)
                      .-.+..-+ ..........|   -.|.+|+..| ++..|+..|.....
T Consensus       287 ~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~-~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  287 LFTREDVDPLSNLNDMQCMWFETECAEAYLRQG-DYGLALKRFHAVLK  333 (517)
T ss_pred             hhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence            88765521 11111122334   3678888888 89999998865443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.01  E-value=3.9e-05  Score=69.09  Aligned_cols=82  Identities=18%  Similarity=0.193  Sum_probs=77.6

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      ++..+|.+.+.+++...|.++..+...|-.|...++++.|.+.+++|+.+.|++-..|..|+.++...|++++|+..+..
T Consensus       214 ~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  214 NEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            56778999999999999999999999999999999999999999999999999999999999999999999999998885


Q ss_pred             hH
Q 029491           82 CS   83 (192)
Q Consensus        82 a~   83 (192)
                      +-
T Consensus       294 ~P  295 (395)
T PF09295_consen  294 CP  295 (395)
T ss_pred             Cc
Confidence            54

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.99  E-value=0.00028  Score=57.49  Aligned_cols=125  Identities=11%  Similarity=0.105  Sum_probs=97.3

Q ss_pred             CCChHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH---HHHHHHHHHHHhcC----
Q 029491            1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDC----   70 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~---~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da---~A~h~lahvl~~~G----   70 (192)
                      .|++.+|...+++++...|..   +.+..++|.++...|++++|...+++-+...|+++   +|..-+|.+...+.    
T Consensus        18 ~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~   97 (203)
T PF13525_consen   18 QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGIL   97 (203)
T ss_dssp             CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccch
Confidence            388999999999999988865   47788999999999999999999999999999987   47777788766654    


Q ss_pred             -------CHHHHHHHHHHhHhhccCCCCcchh------------hhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           71 -------CFKEAVQFMEECSSTWSSCSSFMYT------------HNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        71 -------r~~eai~~~~~a~~~~p~~~~~~~~------------h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                             ...+|+..++..+...|+++-...+            ..-+..|.+++..| .|..|+..|+..|..-
T Consensus        98 ~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~-~y~aA~~r~~~v~~~y  171 (203)
T PF13525_consen   98 RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRG-KYKAAIIRFQYVIENY  171 (203)
T ss_dssp             -TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--HHHHHHHHHHHHHHS
T ss_pred             hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHC
Confidence                   3458999999999999997531001            12356899999998 9999999999999885

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=0.0002  Score=64.75  Aligned_cols=120  Identities=10%  Similarity=0.063  Sum_probs=102.1

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      .++..|+...++++..+|.+..++-+.|..|...||.++|.-++|.|.-|.|-+-..+--+-|.+..+|+++||......
T Consensus       314 K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~  393 (564)
T KOG1174|consen  314 KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANW  393 (564)
T ss_pred             hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhccCCCCcchhhhHHHH-HHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           82 CSSTWSSCSSFMYTHNWWHV-ALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~Whl-Al~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++.-|.+..   .---  + +..++..-.--|+|-+.||+.+..+
T Consensus       394 ~~~~~~~sA~---~LtL--~g~~V~~~dp~~rEKAKkf~ek~L~~~  434 (564)
T KOG1174|consen  394 TIRLFQNSAR---SLTL--FGTLVLFPDPRMREKAKKFAEKSLKIN  434 (564)
T ss_pred             HHHHhhcchh---hhhh--hcceeeccCchhHHHHHHHHHhhhccC
Confidence            9999888532   1111  2 2333332112489999999999885

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.96  E-value=7.5e-05  Score=66.21  Aligned_cols=124  Identities=10%  Similarity=0.030  Sum_probs=103.8

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++..|+..+-.|++.+|++..+..-.|.++..+|+-.-|..-..|.|++.|+..-|.-..|+|+..+|..++|++-++
T Consensus        51 ~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~  130 (504)
T KOG0624|consen   51 RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFD  130 (504)
T ss_pred             hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHH
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhh-------hHH---HHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           81 ECSSTWSSCSSFMYTH-------NWW---HVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h-------~~W---hlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      ..+...|+........       -.|   +........| ++..|++..+..+..
T Consensus       131 ~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~G-D~~~ai~~i~~llEi  184 (504)
T KOG0624|consen  131 QVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSG-DCQNAIEMITHLLEI  184 (504)
T ss_pred             HHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCC-chhhHHHHHHHHHhc
Confidence            9999998754311111       122   3444455566 788888777665544

>PRK15331 chaperone protein SicA; Provisional

Probab=97.95  E-value=4.8e-05  Score=60.71  Aligned_cols=84  Identities=15%  Similarity=-0.052  Sum_probs=80.7

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |+..+|...++-..-.+|.++..+.-+|-++...++|++|+..+-.|..++++||-..+-.|-++.+.|+.++|+..++.
T Consensus        51 Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~  130 (165)
T PRK15331         51 GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFEL  130 (165)
T ss_pred             CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHH
Confidence            89999999999999999999988888999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhh
Q 029491           82 CSST   85 (192)
Q Consensus        82 a~~~   85 (192)
                      ++..
T Consensus       131 a~~~  134 (165)
T PRK15331        131 VNER  134 (165)
T ss_pred             HHhC
Confidence            9983

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=7.8e-05  Score=67.12  Aligned_cols=124  Identities=10%  Similarity=0.064  Sum_probs=108.7

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHH------------HHHHHHHHHh
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS------------QHALCHVLQH   68 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A------------~h~lahvl~~   68 (192)
                      +|+.+++.+..-+++.+++.+.+++...|.++.-++..+.|..++.++|.++|+.-.+            +-.-|.-...
T Consensus       182 ~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk  261 (486)
T KOG0550|consen  182 LGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK  261 (486)
T ss_pred             cccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh
Confidence            4788899999999999999999999999999999999999999999999999887544            4455777788


Q ss_pred             cCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           69 DCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        69 ~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .|+..+|-+.|..++.+.|++-. .-+|.+|+.|+..+.+| +.++|+.-.+.++..+
T Consensus       262 ~G~y~~A~E~Yteal~idP~n~~-~naklY~nra~v~~rLg-rl~eaisdc~~Al~iD  317 (486)
T KOG0550|consen  262 NGNYRKAYECYTEALNIDPSNKK-TNAKLYGNRALVNIRLG-RLREAISDCNEALKID  317 (486)
T ss_pred             ccchhHHHHHHHHhhcCCccccc-hhHHHHHHhHhhhcccC-CchhhhhhhhhhhhcC
Confidence            99999999999999999999654 36788999999999999 9999999999888773

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.94  E-value=3.3e-05  Score=52.82  Aligned_cols=72  Identities=14%  Similarity=0.151  Sum_probs=56.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCc--chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           53 KHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSF--MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        53 P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~--~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      |+-+.++.++|.++..+|++++|+..+++++++....+.-  ..+....++|.++...| ++++|+..|++++..
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG-DYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhh
Confidence            4556789999999999999999999999999774332210  01335567999999999 999999999998865

...

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.92  E-value=2.4e-05  Score=44.99  Aligned_cols=34  Identities=21%  Similarity=0.289  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC
Q 029491           22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD   55 (192)
Q Consensus        22 ~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d   55 (192)
                      +.++..+|.++..+|++++|++.+++|++++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3567778888888888888888888888888875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.91  E-value=0.00022  Score=60.93  Aligned_cols=99  Identities=11%  Similarity=0.043  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHH
Q 029491           25 FGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHV  101 (192)
Q Consensus        25 ~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~Whl  101 (192)
                      ....|+-+...|+|.+|+..++.-+.-=|++   +.|+..||.+++.+|++++|...+..+.+.+|+++-  ....-.-+
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~K--ApdallKl  221 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPK--APDALLKL  221 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCC--ChHHHHHH
Confidence            6788999999999999999999999999986   479999999999999999999999999999999875  44566779


Q ss_pred             HHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491          102 ALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus       102 Al~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      |.+..++| +.|+|.+.|++.+...
T Consensus       222 g~~~~~l~-~~d~A~atl~qv~k~Y  245 (262)
T COG1729         222 GVSLGRLG-NTDEACATLQQVIKRY  245 (262)
T ss_pred             HHHHHHhc-CHHHHHHHHHHHHHHC
Confidence            99999999 9999999999999886

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.89  E-value=2.8e-05  Score=65.09  Aligned_cols=89  Identities=17%  Similarity=0.089  Sum_probs=83.5

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |-.+-|+--+.+++++.|+-|.+.+.+|.-|.+.|+|+.|.+.+.-.++|+|..-.|+-|.|-.++.-||+.=|.+-+.+
T Consensus        79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~  158 (297)
T COG4785          79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLA  158 (297)
T ss_pred             hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHH
Confidence            55667777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhccCCC
Q 029491           82 CSSTWSSCS   90 (192)
Q Consensus        82 a~~~~p~~~   90 (192)
                      .-..+|++|
T Consensus       159 fYQ~D~~DP  167 (297)
T COG4785         159 FYQDDPNDP  167 (297)
T ss_pred             HHhcCCCCh
Confidence            888888865

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.89  E-value=8.5e-05  Score=60.16  Aligned_cols=85  Identities=15%  Similarity=0.159  Sum_probs=62.8

Q ss_pred             CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHH
Q 029491           37 QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF----------KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYL  106 (192)
Q Consensus        37 ~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~----------~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l  106 (192)
                      -|+.|.+.++...+.||+|+.++++-|.+|.++.++          ++||.=+++|+.++|+.     ....|.+|.+|.
T Consensus         6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~-----hdAlw~lGnA~t   80 (186)
T PF06552_consen    6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK-----HDALWCLGNAYT   80 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch-----HHHHHHHHHHHH
Confidence            367899999999999999999999999999998666          56788888899999884     346777888776


Q ss_pred             hCC---CC-------HHHHHHHHHHhhhhh
Q 029491          107 EGH---SP-------MRKVLEIYDNHIWKE  126 (192)
Q Consensus       107 ~~G---~~-------~deAl~~yd~~i~~~  126 (192)
                      .+|   .+       |++|...|++++..+
T Consensus        81 s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~  110 (186)
T PF06552_consen   81 SLAFLTPDTAEAEEYFEKATEYFQKAVDED  110 (186)
T ss_dssp             HHHHH---HHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHhhcCChHHHHHHHHHHHHHHHHHHhcC
Confidence            654   02       566666677666664

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.88  E-value=9.1e-05  Score=70.37  Aligned_cols=119  Identities=12%  Similarity=0.020  Sum_probs=105.9

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      +++.++....++.++.+|-....+..+|.+-.+.+++..|...|-+.+.++|++..++.|++-.+...|+-.+|...+.+
T Consensus       499 ~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~E  578 (777)
T KOG1128|consen  499 KDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKE  578 (777)
T ss_pred             hhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHH
Confidence            67899999999999999999988889999889999999999999999999999999999999999999999999999999


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ++.-+-++.     .+|-|.-+....-| .+|+|++.|.+.+.-+
T Consensus       579 AlKcn~~~w-----~iWENymlvsvdvg-e~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  579 ALKCNYQHW-----QIWENYMLVSVDVG-EFEDAIKAYHRLLDLR  617 (777)
T ss_pred             HhhcCCCCC-----eeeechhhhhhhcc-cHHHHHHHHHHHHHhh
Confidence            998763322     24556666778898 9999999998887765

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.88  E-value=0.00042  Score=56.97  Aligned_cols=113  Identities=19%  Similarity=0.024  Sum_probs=88.5

Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-ccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcc
Q 029491            9 DIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK-INKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWS   87 (192)
Q Consensus         9 ~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALa-L~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p   87 (192)
                      +-..+.+...|.. .-+.-+|.++.|.|++.||+.++.+|++ +--+|+..+-.++.++...+++.++...++...+.+|
T Consensus        77 Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p  155 (251)
T COG4700          77 REATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP  155 (251)
T ss_pred             HHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC
Confidence            3334444444433 2345678899999999999999999997 7788999999999999999999999999999999988


Q ss_pred             CCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           88 SCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        88 ~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ...+ ...|.-  +|-.+-.+| .++.|...++.++.-.
T Consensus       156 a~r~-pd~~Ll--~aR~laa~g-~~a~Aesafe~a~~~y  190 (251)
T COG4700         156 AFRS-PDGHLL--FARTLAAQG-KYADAESAFEVAISYY  190 (251)
T ss_pred             ccCC-CCchHH--HHHHHHhcC-CchhHHHHHHHHHHhC
Confidence            8654 355544  666666677 8999999999888764

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.87  E-value=0.00089  Score=56.38  Aligned_cols=104  Identities=10%  Similarity=-0.049  Sum_probs=85.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhh
Q 029491           21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ---HALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN   97 (192)
Q Consensus        21 ~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~---h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~   97 (192)
                      ++......|..+.+.|+|++|++.+++.+...|+.+++.   ..+|.++..+|+.++|+..+++.++.+|+++..  ...
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~--~~a  108 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI--DYV  108 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch--HHH
Confidence            455666788888999999999999999999999999887   888999999999999999999999999998763  334


Q ss_pred             HHHHHHHHHhCCC-----------------CHHHHHHHHHHhhhhh
Q 029491           98 WWHVALCYLEGHS-----------------PMRKVLEIYDNHIWKE  126 (192)
Q Consensus        98 ~WhlAl~~l~~G~-----------------~~deAl~~yd~~i~~~  126 (192)
                      ..-+|+++..++.                 ...+|+..+++-|..-
T Consensus       109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y  154 (243)
T PRK10866        109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY  154 (243)
T ss_pred             HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC
Confidence            4457776544320                 1356888898988885

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.84  E-value=0.0005  Score=56.56  Aligned_cols=114  Identities=13%  Similarity=0.098  Sum_probs=101.1

Q ss_pred             CCChHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLP-YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH--DCWSQHALCHVLQHDCCFKEAVQ   77 (192)
Q Consensus         1 ~G~~~~al~~~~ral~-~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~--da~A~h~lahvl~~~Gr~~eai~   77 (192)
                      +||+.|+...+++++. ...+|+..+--++.++.+.+++.+|....+.-.+-+|.  .|..+-.+|.++..+|+.++|..
T Consensus       102 lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aes  181 (251)
T COG4700         102 LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAES  181 (251)
T ss_pred             hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHH
Confidence            5999999999999998 78899999999999999999999999999999999986  78899999999999999999999


Q ss_pred             HHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHH
Q 029491           78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDN  121 (192)
Q Consensus        78 ~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~  121 (192)
                      .++.++.-.|+.    .+-..  .+.++...| +.+++-+-|..
T Consensus       182 afe~a~~~ypg~----~ar~~--Y~e~La~qg-r~~ea~aq~~~  218 (251)
T COG4700         182 AFEVAISYYPGP----QARIY--YAEMLAKQG-RLREANAQYVA  218 (251)
T ss_pred             HHHHHHHhCCCH----HHHHH--HHHHHHHhc-chhHHHHHHHH
Confidence            999999999883    33444  677788888 88888877644

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.82  E-value=0.00088  Score=52.31  Aligned_cols=102  Identities=12%  Similarity=0.076  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhH
Q 029491           22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNW   98 (192)
Q Consensus        22 ~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da---~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~   98 (192)
                      +..+..-|....+.|+|++|++.++.-..--|..+   .|.-.++.+++.+|++++|++.+++-++++|.++..  .-..
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v--dYa~   87 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV--DYAY   87 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc--cHHH
Confidence            46677889999999999999999999988887755   678889999999999999999999999999998763  3455


Q ss_pred             HHHHHHHHhCCCC---------------HHHHHHHHHHhhhhh
Q 029491           99 WHVALCYLEGHSP---------------MRKVLEIYDNHIWKE  126 (192)
Q Consensus        99 WhlAl~~l~~G~~---------------~deAl~~yd~~i~~~  126 (192)
                      ...||+++... +               ..+|+.-|++.|..-
T Consensus        88 Y~~gL~~~~~~-~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y  129 (142)
T PF13512_consen   88 YMRGLSYYEQD-EGSLQSFFRSDRDPTPARQAFRDFEQLVRRY  129 (142)
T ss_pred             HHHHHHHHHHh-hhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence            67888888875 5               677777777777764

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.81  E-value=5.2e-05  Score=71.19  Aligned_cols=118  Identities=15%  Similarity=0.133  Sum_probs=103.1

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      +++...+..++++|.-.|+.+.-+.|.|..|.-.|+-++|-...|.++..+|.+.--||.+|-++-...+++|||.+|+.
T Consensus        21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~n  100 (700)
T KOG1156|consen   21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRN  100 (700)
T ss_pred             HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHH
Confidence            45667788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      |+.+.|++..     ++-.+++....+| +|+-....-.+.+..
T Consensus       101 Al~~~~dN~q-----ilrDlslLQ~QmR-d~~~~~~tr~~LLql  138 (700)
T KOG1156|consen  101 ALKIEKDNLQ-----ILRDLSLLQIQMR-DYEGYLETRNQLLQL  138 (700)
T ss_pred             HHhcCCCcHH-----HHHHHHHHHHHHH-hhhhHHHHHHHHHHh
Confidence            9999999633     6667899888888 787665444343433

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.80  E-value=0.0001  Score=61.15  Aligned_cols=87  Identities=14%  Similarity=0.109  Sum_probs=81.2

Q ss_pred             CChHHHHHHHHhhcCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQE-----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAV   76 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~-----~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai   76 (192)
                      |++.+|...+++||..-|.-     +..+++.|.++...+..+.|+..+-+||+|+|..--|+-..|.+++..-.+++|+
T Consensus       109 gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eeal  188 (271)
T KOG4234|consen  109 GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEAL  188 (271)
T ss_pred             ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHH
Confidence            88999999999999988853     5788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHhhccC
Q 029491           77 QFMEECSSTWSS   88 (192)
Q Consensus        77 ~~~~~a~~~~p~   88 (192)
                      .-|.+.+...|.
T Consensus       189 eDyKki~E~dPs  200 (271)
T KOG4234|consen  189 EDYKKILESDPS  200 (271)
T ss_pred             HHHHHHHHhCcc
Confidence            999999999877

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.79  E-value=0.00035  Score=66.19  Aligned_cols=117  Identities=10%  Similarity=0.062  Sum_probs=106.2

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      +|..++|++..++++...|+.+-++-|+|-+++.+++.+.|.+.|...+...|+.+-.+-.++..-+..|..-.|...++
T Consensus       664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ild  743 (913)
T KOG0495|consen  664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILD  743 (913)
T ss_pred             hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHH--HhCCCCHHHHHHHHHHhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCY--LEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~--l~~G~~~deAl~~yd~~i~~  125 (192)
                      ++.-.+|.+..     .|  ++...  +..| ..+.|-.+..++++.
T Consensus       744 rarlkNPk~~~-----lw--le~Ir~ElR~g-n~~~a~~lmakALQe  782 (913)
T KOG0495|consen  744 RARLKNPKNAL-----LW--LESIRMELRAG-NKEQAELLMAKALQE  782 (913)
T ss_pred             HHHhcCCCcch-----hH--HHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence            99999999643     44  55555  4578 899999999888875

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.78  E-value=0.00042  Score=60.87  Aligned_cols=117  Identities=14%  Similarity=0.053  Sum_probs=87.6

Q ss_pred             ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD-CWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d-a~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      +.+.|+..+.||+..+|...-+--++|-+....|+|+.|.+..++.++-||.- +...-.+.+++..+|+.++++.|+.+
T Consensus       195 ~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~  274 (389)
T COG2956         195 DVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR  274 (389)
T ss_pred             hHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            45678888888888888888888888888888888888888888888888884 57778888888888888888888888


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++..+...    ..+-  ++-.-....| .++|.....+.+.+.
T Consensus       275 ~~~~~~g~~----~~l~--l~~lie~~~G-~~~Aq~~l~~Ql~r~  312 (389)
T COG2956         275 AMETNTGAD----AELM--LADLIELQEG-IDAAQAYLTRQLRRK  312 (389)
T ss_pred             HHHccCCcc----HHHH--HHHHHHHhhC-hHHHHHHHHHHHhhC
Confidence            888877742    1211  3322222222 567777777777663

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.77  E-value=0.00044  Score=52.79  Aligned_cols=84  Identities=20%  Similarity=0.274  Sum_probs=62.4

Q ss_pred             CChHHHHHHHHhhcCCCCCC--------H--------------HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQE--------D--------------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ   59 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~--------~--------------~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~   59 (192)
                      |+...+...+++++.++.++        .              .+...++-.+.+.|++++|+..++++++++|.|-.++
T Consensus        20 ~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~   99 (146)
T PF03704_consen   20 GDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAY   99 (146)
T ss_dssp             T-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            56777888888888876321        1              2233345566779999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhHhh
Q 029491           60 HALCHVLQHDCCFKEAVQFMEECSST   85 (192)
Q Consensus        60 h~lahvl~~~Gr~~eai~~~~~a~~~   85 (192)
                      ..+-.++..+|+..+|+..|++..+.
T Consensus       100 ~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen  100 RLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            99999999999999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.75  E-value=0.0004  Score=54.20  Aligned_cols=89  Identities=9%  Similarity=0.043  Sum_probs=79.0

Q ss_pred             CChHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH---HHHHHHHHHHHhcCC----
Q 029491            2 GRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDCC----   71 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~---~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da---~A~h~lahvl~~~Gr----   71 (192)
                      |++.+|...++.+....|..+   .+.-.++.++-..|++++|.+.++|-+.|+|+++   +|+.-.|.+...+..    
T Consensus        24 ~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~  103 (142)
T PF13512_consen   24 GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQ  103 (142)
T ss_pred             CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHh
Confidence            788999999999988888654   6778999999999999999999999999999987   677788888888877    


Q ss_pred             -----------HHHHHHHHHHhHhhccCCC
Q 029491           72 -----------FKEAVQFMEECSSTWSSCS   90 (192)
Q Consensus        72 -----------~~eai~~~~~a~~~~p~~~   90 (192)
                                 ..+|...+++.++.+|++.
T Consensus       104 ~~~~~drD~~~~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen  104 SFFRSDRDPTPARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             hhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence                       8999999999999999853

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.74  E-value=0.00015  Score=64.06  Aligned_cols=118  Identities=11%  Similarity=0.046  Sum_probs=100.4

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC---CHHHHHHHHHHHHhcCCHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH---DCWSQHALCHVLQHDCCFKEAVQF   78 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~---da~A~h~lahvl~~~Gr~~eai~~   78 (192)
                      |+.+.|+..++|.|..--.+|....++|....-.+++|-+...+.||++..-+   -+..|.++|+|....|++.-|...
T Consensus       338 ~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rc  417 (478)
T KOG1129|consen  338 NNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRC  417 (478)
T ss_pred             CChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHH
Confidence            56788899999999998899999999999999999999999999999987653   357899999999999999999999


Q ss_pred             HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      ++-++..+|+..   .+-|  ++|......| +.++|..+|..+-..
T Consensus       418 frlaL~~d~~h~---ealn--NLavL~~r~G-~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  418 FRLALTSDAQHG---EALN--NLAVLAARSG-DILGARSLLNAAKSV  458 (478)
T ss_pred             HHHHhccCcchH---HHHH--hHHHHHhhcC-chHHHHHHHHHhhhh
Confidence            999998887743   3334  4999888888 899999999775443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.73  E-value=5.4e-05  Score=43.85  Aligned_cols=33  Identities=18%  Similarity=0.302  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC
Q 029491           23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD   55 (192)
Q Consensus        23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d   55 (192)
                      .++..+|.++..+|++++|+..+++||+++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            456677777777777777777777777777763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.73  E-value=7.4e-05  Score=66.28  Aligned_cols=89  Identities=12%  Similarity=0.022  Sum_probs=84.2

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |.+++|++++.+.+..+|-++..+.+.|.++....+|..||.-+..|++||..-.-|+...+.+-...|...||-.-++.
T Consensus       111 gKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~  190 (536)
T KOG4648|consen  111 GKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCET  190 (536)
T ss_pred             cchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhccCCC
Q 029491           82 CSSTWSSCS   90 (192)
Q Consensus        82 a~~~~p~~~   90 (192)
                      ++++-|...
T Consensus       191 vL~LEP~~~  199 (536)
T KOG4648|consen  191 VLALEPKNI  199 (536)
T ss_pred             HHhhCcccH
Confidence            999998854

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.72  E-value=0.00067  Score=59.66  Aligned_cols=119  Identities=17%  Similarity=0.127  Sum_probs=103.4

Q ss_pred             ChHHHHHHHHhhcCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491            3 RPDLCFDIIHQVLPYNQQE-----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ   77 (192)
Q Consensus         3 ~~~~al~~~~ral~~~p~~-----~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~   77 (192)
                      ++..|++..++...+.|+.     +.++.-+|-......++++|.....+|++-||+..-|-.-+|.+...+|+++.|++
T Consensus       156 eW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~  235 (389)
T COG2956         156 EWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVE  235 (389)
T ss_pred             HHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHH
Confidence            5678899999888888765     57777888888889999999999999999999999999999999999999999999


Q ss_pred             HHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        78 ~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .+++.++.+|..-+    ..---+.-+|-.+| +.++.+....+.+...
T Consensus       236 ~~e~v~eQn~~yl~----evl~~L~~~Y~~lg-~~~~~~~fL~~~~~~~  279 (389)
T COG2956         236 ALERVLEQNPEYLS----EVLEMLYECYAQLG-KPAEGLNFLRRAMETN  279 (389)
T ss_pred             HHHHHHHhChHHHH----HHHHHHHHHHHHhC-CHHHHHHHHHHHHHcc
Confidence            99999999988643    23334777888898 8999999998888774

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=0.00012  Score=61.91  Aligned_cols=84  Identities=18%  Similarity=0.197  Sum_probs=79.6

Q ss_pred             ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491            3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC   82 (192)
Q Consensus         3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a   82 (192)
                      ++..+.+.+.|++..+|.-+..+.+.+..+....+++..+.-++||+++.||.+-++..+|.++.....+.+||..+.++
T Consensus        25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra  104 (284)
T KOG4642|consen   25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA  104 (284)
T ss_pred             hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhc
Q 029491           83 SSTW   86 (192)
Q Consensus        83 ~~~~   86 (192)
                      ..+.
T Consensus       105 ~sl~  108 (284)
T KOG4642|consen  105 YSLL  108 (284)
T ss_pred             HHHH
Confidence            6543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.70  E-value=0.00046  Score=67.85  Aligned_cols=75  Identities=9%  Similarity=0.131  Sum_probs=66.1

Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc
Q 029491           11 IHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTW   86 (192)
Q Consensus        11 ~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~   86 (192)
                      +-+.+-..|++-+++..+|.++..+|+.++|.+.++++|.++|+|+.++.++|..+... +.++|+..+.+|+...
T Consensus       105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~  179 (906)
T PRK14720        105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF  179 (906)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            33344445566699999999999999999999999999999999999999999999999 9999999999998543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.65  E-value=0.0006  Score=63.51  Aligned_cols=134  Identities=16%  Similarity=0.036  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHH
Q 029491           23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVA  102 (192)
Q Consensus        23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlA  102 (192)
                      +++..+|--+-..|++++|.+..++||+.+|..+..+...|.++-..|++++|..+++.+..+++.+.    .-|. -.+
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR----yiNs-K~a  269 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR----YINS-KCA  269 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH----HHHH-HHH
Confidence            66777888899999999999999999999999999999999999999999999999999999998863    2233 477


Q ss_pred             HHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHH---------HHHHHHHHhhhcCcccchhchHHHHHHHHhh
Q 029491          103 LCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYL---------NALGLLLRVYVRGELDVFGNRLKVLADCVAD  170 (192)
Q Consensus       103 l~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~---------da~sLL~Rl~l~g~~~~~~~rw~~l~~~~~~  170 (192)
                      -+.|..| ++++|..+.-.=...+    . .+..++.         ..+.-.+|..-.|.   .=.|+..|.....+
T Consensus       270 Ky~LRa~-~~e~A~~~~~~Ftr~~----~-~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~---ALk~~~~v~k~f~~  337 (517)
T PF12569_consen  270 KYLLRAG-RIEEAEKTASLFTRED----V-DPLSNLNDMQCMWFETECAEAYLRQGDYGL---ALKRFHAVLKHFDD  337 (517)
T ss_pred             HHHHHCC-CHHHHHHHHHhhcCCC----C-CcccCHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHH
Confidence            7778888 9999998875443332    1 1222332         23333445444343   23566666666655

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.63  E-value=0.00028  Score=61.04  Aligned_cols=86  Identities=17%  Similarity=0.125  Sum_probs=64.1

Q ss_pred             hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHh
Q 029491            4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF-KEAVQFMEEC   82 (192)
Q Consensus         4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~-~eai~~~~~a   82 (192)
                      ..+|.-.++......|..+..++.+|.+.+.+|+|++|++...+|+..+|+|+.+..|+..+...+|+. ++.-+++.+.
T Consensus       183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL  262 (290)
T PF04733_consen  183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL  262 (290)
T ss_dssp             CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence            456666777766666778888888888888899999999999999999999999888988888888888 4455667776


Q ss_pred             HhhccCC
Q 029491           83 SSTWSSC   89 (192)
Q Consensus        83 ~~~~p~~   89 (192)
                      ....|..
T Consensus       263 ~~~~p~h  269 (290)
T PF04733_consen  263 KQSNPNH  269 (290)
T ss_dssp             HHHTTTS
T ss_pred             HHhCCCC
Confidence            6676663

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.63  E-value=4.6e-05  Score=45.01  Aligned_cols=33  Identities=18%  Similarity=0.215  Sum_probs=31.1

Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 029491           11 IHQVLPYNQQEDFIFGILAFSLLELGQMSDAEE   43 (192)
Q Consensus        11 ~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~   43 (192)
                      ++|+++++|+++.++.++|.++...|++++|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            689999999999999999999999999999973

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.61  E-value=0.003  Score=51.43  Aligned_cols=110  Identities=15%  Similarity=0.138  Sum_probs=82.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhh
Q 029491           21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN   97 (192)
Q Consensus        21 ~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da---~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~   97 (192)
                      ++..+...|..+.+.|+|++|...+++.+...|+++   .|...+|.++..+|++++|+..+++.++..|+++.  ....
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~--~~~A   81 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK--ADYA   81 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT--HHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc--hhhH
Confidence            456677888899999999999999999999998876   56788999999999999999999999999999875  3445


Q ss_pred             HHHHHHHHHhCC----------CCHHHHHHHHHHhhhhhhCCCCCCCh
Q 029491           98 WWHVALCYLEGH----------SPMRKVLEIYDNHIWKELEKPDAVHP  135 (192)
Q Consensus        98 ~WhlAl~~l~~G----------~~~deAl~~yd~~i~~~~~~~~~~~~  135 (192)
                      ...+|++++...          ....+|+..|+.-|..-  | +|...
T Consensus        82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y--P-~S~y~  126 (203)
T PF13525_consen   82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY--P-NSEYA  126 (203)
T ss_dssp             HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH---T-TSTTH
T ss_pred             HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC--c-CchHH
Confidence            556777765432          03458899999998875  4 44444

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.61  E-value=0.00047  Score=63.19  Aligned_cols=112  Identities=11%  Similarity=0.047  Sum_probs=93.1

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |+.+.+...+..+|.-+..-..++.+.|.+.+..|++++|.+++-+--++=.+++..+..++.+++...++..||+++-+
T Consensus       504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q  583 (840)
T KOG2003|consen  504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ  583 (840)
T ss_pred             CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            88899999999999988888899999999999999999999999998888889999999999999999999999999999


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHH
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIY  119 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~y  119 (192)
                      +..+-|.+|..     ---+|-.|-..| +-..|.+.|
T Consensus       584 ~~slip~dp~i-----lskl~dlydqeg-dksqafq~~  615 (840)
T KOG2003|consen  584 ANSLIPNDPAI-----LSKLADLYDQEG-DKSQAFQCH  615 (840)
T ss_pred             hcccCCCCHHH-----HHHHHHHhhccc-chhhhhhhh
Confidence            99888887642     113555554455 556666554

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.60  E-value=0.00037  Score=54.30  Aligned_cols=85  Identities=15%  Similarity=0.071  Sum_probs=79.3

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC----CHHHHHHHHHHHHhcCCHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH----DCWSQHALCHVLQHDCCFKEAVQ   77 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~----da~A~h~lahvl~~~Gr~~eai~   77 (192)
                      |+.++++..+.+++.+-|..+.++++.|-++.-+|+.++|..-..+||+|.-.    -+.++...|.++-.+|+-+.|..
T Consensus        57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~  136 (175)
T KOG4555|consen   57 GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARA  136 (175)
T ss_pred             cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHH
Confidence            78999999999999999999999999999999999999999999999999743    45778889999999999999999


Q ss_pred             HHHHhHhhc
Q 029491           78 FMEECSSTW   86 (192)
Q Consensus        78 ~~~~a~~~~   86 (192)
                      -++++.++-
T Consensus       137 DFe~AA~LG  145 (175)
T KOG4555|consen  137 DFEAAAQLG  145 (175)
T ss_pred             hHHHHHHhC
Confidence            999999884

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.57  E-value=0.0065  Score=61.14  Aligned_cols=20  Identities=20%  Similarity=0.155  Sum_probs=7.9

Q ss_pred             HHHHcCCHHHHHHHHHHHhc
Q 029491           31 SLLELGQMSDAEEAAKKGLK   50 (192)
Q Consensus        31 ~L~e~g~~~eAe~~~rrALa   50 (192)
                      ++...|++++|++.+++...
T Consensus       588 ay~k~G~ldeA~elf~~M~e  607 (1060)
T PLN03218        588 ACANAGQVDRAKEVYQMIHE  607 (1060)
T ss_pred             HHHHCCCHHHHHHHHHHHHH
Confidence            33333444444444333333

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.53  E-value=0.00048  Score=58.82  Aligned_cols=123  Identities=12%  Similarity=0.088  Sum_probs=87.6

Q ss_pred             CChHHHHHHHHhhcCCC-----CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccc--CCC----HHHHHHHHHHHHhc
Q 029491            2 GRPDLCFDIIHQVLPYN-----QQE-DFIFGILAFSLLELGQMSDAEEAAKKGLKIN--KHD----CWSQHALCHVLQHD   69 (192)
Q Consensus         2 G~~~~al~~~~ral~~~-----p~~-~~~~~~laf~L~e~g~~~eAe~~~rrALaL~--P~d----a~A~h~lahvl~~~   69 (192)
                      |++.+|...+.++....     +.. +..+...+.++.+. ++++|+..+++|+.+-  -++    +..+..+|.+++..
T Consensus        49 ~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~  127 (282)
T PF14938_consen   49 KDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQ  127 (282)
T ss_dssp             T-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCT
T ss_pred             hccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence            56777888888776532     111 34444555555555 9999999999999973  222    56788999999999


Q ss_pred             -CCHHHHHHHHHHhHhhccCCCCc-chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           70 -CCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        70 -Gr~~eai~~~~~a~~~~p~~~~~-~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                       |++++|+..|++|.......... ......-.+|.++..+| +|++|+.+|++.+...
T Consensus       128 ~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~-~y~~A~~~~e~~~~~~  185 (282)
T PF14938_consen  128 LGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG-RYEEAIEIYEEVAKKC  185 (282)
T ss_dssp             T--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTC
T ss_pred             cCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHh
Confidence             99999999999999887664421 12224457899999999 9999999999987753

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.48  E-value=0.00099  Score=57.62  Aligned_cols=121  Identities=19%  Similarity=0.218  Sum_probs=91.5

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhHhhccCCCCcchhhh
Q 029491           20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC--CFKEAVQFMEECSSTWSSCSSFMYTHN   97 (192)
Q Consensus        20 ~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~G--r~~eai~~~~~a~~~~p~~~~~~~~h~   97 (192)
                      ++.....+.-.++...+|++.|++..+..-..+.++.-..-+-++|...+|  ...+|.-+|++.....+..+   ...+
T Consensus       129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~---~~ln  205 (290)
T PF04733_consen  129 GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTP---KLLN  205 (290)
T ss_dssp             TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SH---HHHH
T ss_pred             CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCH---HHHH
Confidence            567777788889999999999999999999999999999999999999988  48999999999777655532   2334


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcCcc
Q 029491           98 WWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGEL  154 (192)
Q Consensus        98 ~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g~~  154 (192)
                        .+|.+++.+| +|++|..++.+++...  + +  .+..+   +++.-.-.+.|.+
T Consensus       206 --g~A~~~l~~~-~~~eAe~~L~~al~~~--~-~--~~d~L---aNliv~~~~~gk~  251 (290)
T PF04733_consen  206 --GLAVCHLQLG-HYEEAEELLEEALEKD--P-N--DPDTL---ANLIVCSLHLGKP  251 (290)
T ss_dssp             --HHHHHHHHCT--HHHHHHHHHHHCCC---C-C--HHHHH---HHHHHHHHHTT-T
T ss_pred             --HHHHHHHHhC-CHHHHHHHHHHHHHhc--c-C--CHHHH---HHHHHHHHHhCCC
Confidence              4999999999 9999999999988764  2 1  22333   3444445566664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.46  E-value=0.00046  Score=61.34  Aligned_cols=93  Identities=9%  Similarity=-0.013  Sum_probs=81.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHh
Q 029491           28 LAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE  107 (192)
Q Consensus        28 laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~  107 (192)
                      .|..+-.+|.|+||+.+|-+++++.|.|+--+.+.+.++..+.+|.-|..-++.++.++..     ..-.+-..+.+..+
T Consensus       103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-----Y~KAYSRR~~AR~~  177 (536)
T KOG4648|consen  103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-----YVKAYSRRMQARES  177 (536)
T ss_pred             hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-----HHHHHHHHHHHHHH
Confidence            4566778999999999999999999999999999999999999999999999999998644     23334457777889


Q ss_pred             CCCCHHHHHHHHHHhhhhh
Q 029491          108 GHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus       108 ~G~~~deAl~~yd~~i~~~  126 (192)
                      +| ...||-.-|++.++.+
T Consensus       178 Lg-~~~EAKkD~E~vL~LE  195 (536)
T KOG4648|consen  178 LG-NNMEAKKDCETVLALE  195 (536)
T ss_pred             Hh-hHHHHHHhHHHHHhhC
Confidence            98 8999999999999885

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.45  E-value=0.0071  Score=44.88  Aligned_cols=119  Identities=20%  Similarity=0.308  Sum_probs=89.6

Q ss_pred             ChHHHHHHHHhhcCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHhcccC---CCHHHHHHHHHHHHhcCCHHHHHHH
Q 029491            3 RPDLCFDIIHQVLPYNQQEDFIFGILAF-SLLELGQMSDAEEAAKKGLKINK---HDCWSQHALCHVLQHDCCFKEAVQF   78 (192)
Q Consensus         3 ~~~~al~~~~ral~~~p~~~~~~~~laf-~L~e~g~~~eAe~~~rrALaL~P---~da~A~h~lahvl~~~Gr~~eai~~   78 (192)
                      ....+.....+++...+.+.......+. ++...|++++|...+.+++.++|   .........+..+...|+.++++..
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  189 (291)
T COG0457         110 KYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALEL  189 (291)
T ss_pred             hHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHH
Confidence            4556777778888877776655666666 78888888888888888888877   4667777777778888888888888


Q ss_pred             HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +.+.+...+...    ......++..+...| +++++...+...+...
T Consensus       190 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~  232 (291)
T COG0457         190 LEKALKLNPDDD----AEALLNLGLLYLKLG-KYEEALEYYEKALELD  232 (291)
T ss_pred             HHHHHhhCcccc----hHHHHHhhHHHHHcc-cHHHHHHHHHHHHhhC
Confidence            888888877721    113334777777777 7888888888888774

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.44  E-value=0.00093  Score=65.66  Aligned_cols=77  Identities=14%  Similarity=0.215  Sum_probs=58.9

Q ss_pred             ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 029491            3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM   79 (192)
Q Consensus         3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~   79 (192)
                      +...++..+-|++.++|..+-++..+|..+.+-.++-+|..++++|.+|+|.|+.+.-+.+.++......++|....
T Consensus       473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~  549 (1238)
T KOG1127|consen  473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC  549 (1238)
T ss_pred             hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence            34566777888888888888888888888888888888888888888888888877777766666555555554443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.40  E-value=0.0026  Score=60.67  Aligned_cols=26  Identities=12%  Similarity=0.120  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491           56 CWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus        56 a~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      .....++...+...|+.++|...+++
T Consensus       360 ~~~~~~Li~~y~k~G~~~~A~~vf~~  385 (697)
T PLN03081        360 IVANTALVDLYSKWGRMEDARNVFDR  385 (697)
T ss_pred             eeehHHHHHHHHHCCCHHHHHHHHHh
Confidence            33334444444444444444444443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.39  E-value=0.0018  Score=59.74  Aligned_cols=113  Identities=15%  Similarity=0.221  Sum_probs=83.9

Q ss_pred             hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc-------C--------------CC----HHH
Q 029491            4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN-------K--------------HD----CWS   58 (192)
Q Consensus         4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~-------P--------------~d----a~A   58 (192)
                      ...-.....+||+.+|+-+.++..+|-  ++..-..||++.++||++..       .              .+    ..+
T Consensus       184 p~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~  261 (539)
T PF04184_consen  184 PQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYA  261 (539)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhh
Confidence            344566788899999999999888753  23444566666666665433       1              11    456


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHh
Q 029491           59 QHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNH  122 (192)
Q Consensus        59 ~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~  122 (192)
                      ...+|.+.-..|+.+|||+.++..++..|..+. +..|.  ++-.++|+++ +|+++-++..+-
T Consensus       262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~-l~Ire--nLie~LLelq-~Yad~q~lL~kY  321 (539)
T PF04184_consen  262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN-LNIRE--NLIEALLELQ-AYADVQALLAKY  321 (539)
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhhCCccch-hhHHH--HHHHHHHhcC-CHHHHHHHHHHh
Confidence            677899999999999999999999999887543 34554  4899999998 899998877663

The molecular function of this protein is uncertain.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.39  E-value=0.003  Score=60.24  Aligned_cols=115  Identities=13%  Similarity=0.008  Sum_probs=78.0

Q ss_pred             CChHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYN-QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         2 G~~~~al~~~~ral~~~-p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      |+.+++.......+... +.+..+++.+..++..+|++++|++.+++...   .|...+.++...+...|+.++|+..++
T Consensus       339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~  415 (697)
T PLN03081        339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFE  415 (697)
T ss_pred             cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence            45556666666555543 45666677777788888888888888887653   366788888888888888888888888


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW  124 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~  124 (192)
                      +....... |.. .+  +-.+-.++...| .+++|+.+|+....
T Consensus       416 ~M~~~g~~-Pd~-~T--~~~ll~a~~~~g-~~~~a~~~f~~m~~  454 (697)
T PLN03081        416 RMIAEGVA-PNH-VT--FLAVLSACRYSG-LSEQGWEIFQSMSE  454 (697)
T ss_pred             HHHHhCCC-CCH-HH--HHHHHHHHhcCC-cHHHHHHHHHHHHH
Confidence            87754332 210 11  112334445666 78888888887765

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.38  E-value=0.00049  Score=67.55  Aligned_cols=116  Identities=10%  Similarity=0.071  Sum_probs=71.6

Q ss_pred             hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHH------------------------------------HHHHHHH
Q 029491            4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSD------------------------------------AEEAAKK   47 (192)
Q Consensus         4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~e------------------------------------Ae~~~rr   47 (192)
                      .-.|..++++|.++||.++.+....+-++.+....++                                    |...++.
T Consensus       508 m~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQs  587 (1238)
T KOG1127|consen  508 MKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQS  587 (1238)
T ss_pred             HHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHH
Confidence            3456777888888888776665555555555555544                                    4555666


Q ss_pred             HhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           48 GLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        48 ALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      ||..+|+|-..+-.+|.++...||...|+..+.++..+.|.+-   .  ..+..|...-..| .|.+++..+...|..
T Consensus       588 ALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~---y--~~fk~A~~ecd~G-kYkeald~l~~ii~~  659 (1238)
T KOG1127|consen  588 ALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK---Y--GRFKEAVMECDNG-KYKEALDALGLIIYA  659 (1238)
T ss_pred             HhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH---H--HHHHHHHHHHHhh-hHHHHHHHHHHHHHH
Confidence            6666666666666666666666666666666666666665532   1  2223555555566 666666666665554

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.37  E-value=0.00049  Score=39.36  Aligned_cols=33  Identities=12%  Similarity=0.075  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491           56 CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS   88 (192)
Q Consensus        56 a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~   88 (192)
                      |.+++.+|.++..+|++++|+..+++++.+.|+
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            467899999999999999999999999999887

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.35  E-value=0.0084  Score=60.32  Aligned_cols=117  Identities=13%  Similarity=0.037  Sum_probs=67.1

Q ss_pred             CChHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----ccCCCHHHHHHHHHHHHhcCCHHHH
Q 029491            2 GRPDLCFDIIHQVLPY--NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK----INKHDCWSQHALCHVLQHDCCFKEA   75 (192)
Q Consensus         2 G~~~~al~~~~ral~~--~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALa----L~P~da~A~h~lahvl~~~Gr~~ea   75 (192)
                      |+.++|+..+.+....  .|+ ...++.+-.++...|++++|.+.+++...    +.|+ ...+.++-.++...|+.++|
T Consensus       521 G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA  598 (1060)
T PLN03218        521 GQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRA  598 (1060)
T ss_pred             cCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHH
Confidence            6666777766666442  343 45566666666777777777777776654    3443 45666666777777777777


Q ss_pred             HHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           76 VQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        76 i~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      ++.+++..+.......  ...+  -+-..+...| ++++|+.+|+.....
T Consensus       599 ~elf~~M~e~gi~p~~--~tyn--sLI~ay~k~G-~~deAl~lf~eM~~~  643 (1060)
T PLN03218        599 KEVYQMIHEYNIKGTP--EVYT--IAVNSCSQKG-DWDFALSIYDDMKKK  643 (1060)
T ss_pred             HHHHHHHHHcCCCCCh--HHHH--HHHHHHHhcC-CHHHHHHHHHHHHHc
Confidence            7777766655322111  1111  1333334455 566666666655544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.34  E-value=0.0014  Score=55.98  Aligned_cols=90  Identities=13%  Similarity=0.002  Sum_probs=81.3

Q ss_pred             CCChHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH---HHHHHHHHHHHhcCCHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDCCFKE   74 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~---~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da---~A~h~lahvl~~~Gr~~e   74 (192)
                      .|++.+|.+.+..-+...|++   +.++.-||-++..+|+|++|...+.+++.-.|+++   .++.-||.++...|+.++
T Consensus       154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~  233 (262)
T COG1729         154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE  233 (262)
T ss_pred             cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence            378899999999999888876   46788899999999999999999999999887765   669999999999999999


Q ss_pred             HHHHHHHhHhhccCCC
Q 029491           75 AVQFMEECSSTWSSCS   90 (192)
Q Consensus        75 ai~~~~~a~~~~p~~~   90 (192)
                      |.+.+++....+|..+
T Consensus       234 A~atl~qv~k~YP~t~  249 (262)
T COG1729         234 ACATLQQVIKRYPGTD  249 (262)
T ss_pred             HHHHHHHHHHHCCCCH
Confidence            9999999999999964

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.0013  Score=58.95  Aligned_cols=83  Identities=16%  Similarity=0.140  Sum_probs=72.6

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHH-HHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEA-VQFM   79 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~ea-i~~~   79 (192)
                      ++++.+|+.++.+||+.+|.+.=++.-.|-++...|+|+.|+..+++|++++|+|-.+...+......-.+..+- ...|
T Consensus       270 l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y  349 (397)
T KOG0543|consen  270 LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMY  349 (397)
T ss_pred             hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999999999999999999999999999999999999999999999888888877766666655 4555


Q ss_pred             HHhH
Q 029491           80 EECS   83 (192)
Q Consensus        80 ~~a~   83 (192)
                      .+.+
T Consensus       350 ~~mF  353 (397)
T KOG0543|consen  350 ANMF  353 (397)
T ss_pred             HHHh
Confidence            5554

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.32  E-value=0.007  Score=55.72  Aligned_cols=133  Identities=16%  Similarity=0.159  Sum_probs=79.7

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcC-----------
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC-----------   70 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~G-----------   70 (192)
                      |+.+++++++-+.-.+--+++.++..+|.+++-..+..+|++.+-++..+=|+||..+.-++..+-..|           
T Consensus       538 ~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~yd  617 (840)
T KOG2003|consen  538 GNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYD  617 (840)
T ss_pred             cCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhh
Confidence            555555555555544444555555555555555555555555555555555555555555555554444           


Q ss_pred             -----------------------CHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhh
Q 029491           71 -----------------------CFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL  127 (192)
Q Consensus        71 -----------------------r~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~  127 (192)
                                             =.+.+|.+++++.-+.|...     ....-.|.|+-..| +|.+|+..|...-+.- 
T Consensus       618 syryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~-----kwqlmiasc~rrsg-nyqka~d~yk~~hrkf-  690 (840)
T KOG2003|consen  618 SYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS-----KWQLMIASCFRRSG-NYQKAFDLYKDIHRKF-  690 (840)
T ss_pred             cccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH-----HHHHHHHHHHHhcc-cHHHHHHHHHHHHHhC-
Confidence                                   45666777777766666521     12223677777777 9999999996644432 


Q ss_pred             CCCCCCChHHHHHHHHHHHHhh
Q 029491          128 EKPDAVHPEVYLNALGLLLRVY  149 (192)
Q Consensus       128 ~~~~~~~~~~~~da~sLL~Rl~  149 (192)
                              .+-+|..-+|-|+.
T Consensus       691 --------pedldclkflvri~  704 (840)
T KOG2003|consen  691 --------PEDLDCLKFLVRIA  704 (840)
T ss_pred             --------ccchHHHHHHHHHh
Confidence                    24567888887764

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.24  E-value=0.024  Score=42.01  Aligned_cols=122  Identities=15%  Similarity=0.146  Sum_probs=96.7

Q ss_pred             CChHHHHHHHHhhcC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHH-HHHhcCCHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLP--YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCH-VLQHDCCFKEAVQF   78 (192)
Q Consensus         2 G~~~~al~~~~ral~--~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lah-vl~~~Gr~~eai~~   78 (192)
                      |+...+.......+.  ..+.....+...+......+.+.++.+....++..++.+......... ++...|++++++..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  152 (291)
T COG0457          73 GRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALEL  152 (291)
T ss_pred             ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence            556677777777776  678888889999999999999999999999999999998777777777 89999999999999


Q ss_pred             HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++++...|....  ........+..+...| ++++++..+++.+...
T Consensus       153 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~  197 (291)
T COG0457         153 YEKALELDPELNE--LAEALLALGALLEALG-RYEEALELLEKALKLN  197 (291)
T ss_pred             HHHHHhcCCCccc--hHHHHHHhhhHHHHhc-CHHHHHHHHHHHHhhC
Confidence            9999876552011  2233333444456677 8999999999988874

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.21  E-value=0.0037  Score=59.46  Aligned_cols=117  Identities=15%  Similarity=0.082  Sum_probs=87.8

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      ||..+++..+.+++..+|.+-..+..---...++.++++|...+.+|....|. .-.+.--++..-.+|..+||+.++++
T Consensus       598 gdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe  676 (913)
T KOG0495|consen  598 GDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEE  676 (913)
T ss_pred             CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHH
Confidence            77788888888888888876555433333556677888888888888887665 44667777888889999999999999


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      ++...|+++-     +|.-+|..+=..+ +.+.|...|...+..
T Consensus       677 ~lk~fp~f~K-----l~lmlGQi~e~~~-~ie~aR~aY~~G~k~  714 (913)
T KOG0495|consen  677 ALKSFPDFHK-----LWLMLGQIEEQME-NIEMAREAYLQGTKK  714 (913)
T ss_pred             HHHhCCchHH-----HHHHHhHHHHHHH-HHHHHHHHHHhcccc
Confidence            9999888542     5556777776677 788888888776654

>PLN03077 Protein ECB2; Provisional

Probab=97.16  E-value=0.025  Score=55.26  Aligned_cols=51  Identities=16%  Similarity=0.004  Sum_probs=28.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 029491           30 FSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSS   84 (192)
Q Consensus        30 f~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~   84 (192)
                      .++..+|++++|...+.+.    +.|..++.++...+.+.|+.++|+..+++..+
T Consensus       532 ~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~  582 (857)
T PLN03077        532 DLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE  582 (857)
T ss_pred             HHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3445555666665555553    44555566666666666666666666665543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.15  E-value=0.0011  Score=38.16  Aligned_cols=33  Identities=9%  Similarity=0.019  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491           56 CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS   88 (192)
Q Consensus        56 a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~   88 (192)
                      |.++..+|.++..+|++++|+..+++++.++|+
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            467899999999999999999999999999886

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.14  E-value=0.0033  Score=58.88  Aligned_cols=114  Identities=12%  Similarity=0.072  Sum_probs=89.5

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |++++++..+.+++...|++..+.-..=.++...++|++|....+.=.++.-.+.-- +-.+.+++.+++.+|++..++.
T Consensus        26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~-fEKAYc~Yrlnk~Dealk~~~~  104 (652)
T KOG2376|consen   26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFF-FEKAYCEYRLNKLDEALKTLKG  104 (652)
T ss_pred             hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhh-HHHHHHHHHcccHHHHHHHHhc
Confidence            678999999999999999999999999999999999999996665544433333322 5789999999999999999995


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      +-++.+.     .-|.   .|..++.+| +|++++.+|..-+.-
T Consensus       105 ~~~~~~~-----ll~L---~AQvlYrl~-~ydealdiY~~L~kn  139 (652)
T KOG2376|consen  105 LDRLDDK-----LLEL---RAQVLYRLE-RYDEALDIYQHLAKN  139 (652)
T ss_pred             ccccchH-----HHHH---HHHHHHHHh-hHHHHHHHHHHHHhc
Confidence            5444321     2344   677888898 999999999665544

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.09  E-value=0.0011  Score=40.84  Aligned_cols=35  Identities=11%  Similarity=-0.091  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCC
Q 029491           56 CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS   90 (192)
Q Consensus        56 a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~   90 (192)
                      |.++..+|.++..+|++++|++.++++++..|+++
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~   35 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDP   35 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            46889999999999999999999999999999964

>PLN03077 Protein ECB2; Provisional

Probab=97.08  E-value=0.013  Score=57.24  Aligned_cols=112  Identities=12%  Similarity=0.161  Sum_probs=84.1

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--ccCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK--INKHDCWSQHALCHVLQHDCCFKEAVQFM   79 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALa--L~P~da~A~h~lahvl~~~Gr~~eai~~~   79 (192)
                      |+.++|+..+.+.    +.|...++.+-.++...|+.++|++.+++...  +.|+. .....+-.++...|+.+||+..+
T Consensus       538 G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f  612 (857)
T PLN03077        538 GRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYF  612 (857)
T ss_pred             CCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHH
Confidence            6777888777765    55677888888899999999999999998776  45654 45667777888899999999999


Q ss_pred             HHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHh
Q 029491           80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNH  122 (192)
Q Consensus        80 ~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~  122 (192)
                      ++..+..+-.|.  ..|+. -+...+-..| ++++|..++++.
T Consensus       613 ~~M~~~~gi~P~--~~~y~-~lv~~l~r~G-~~~eA~~~~~~m  651 (857)
T PLN03077        613 HSMEEKYSITPN--LKHYA-CVVDLLGRAG-KLTEAYNFINKM  651 (857)
T ss_pred             HHHHHHhCCCCc--hHHHH-HHHHHHHhCC-CHHHHHHHHHHC
Confidence            988865554443  22322 2555566777 899999999875

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.05  E-value=0.0044  Score=54.38  Aligned_cols=118  Identities=16%  Similarity=0.044  Sum_probs=96.5

Q ss_pred             ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------hccc--------------------
Q 029491            3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKG----------LKIN--------------------   52 (192)
Q Consensus         3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrA----------LaL~--------------------   52 (192)
                      ++.+|-+++++.-...|........+|-.|...+.+..|.++...-          +.|.                    
T Consensus        59 ~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl  138 (459)
T KOG4340|consen   59 EFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL  138 (459)
T ss_pred             HHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhc
Confidence            4667888889888889999988889999999999999887764433          2222                    


Q ss_pred             C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           53 K--HDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        53 P--~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      |  +++....+.|-+++..|++++|+.-+..+++...-.|.     ...++|++|+..| +|+.|++....-|.+.
T Consensus       139 p~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl-----lAYniALaHy~~~-qyasALk~iSEIieRG  208 (459)
T KOG4340|consen  139 PSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL-----LAYNLALAHYSSR-QYASALKHISEIIERG  208 (459)
T ss_pred             cCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch-----hHHHHHHHHHhhh-hHHHHHHHHHHHHHhh
Confidence            5  79999999999999999999999999999987544332     4456999999998 8999999887777664

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.03  E-value=0.0013  Score=37.66  Aligned_cols=31  Identities=26%  Similarity=0.273  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhcccCC
Q 029491           24 IFGILAFSLLELGQMSDAEEAAKKGLKINKH   54 (192)
Q Consensus        24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~   54 (192)
                      ++.++|-++.+.|++++|.+.++++++++|+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4566677777777777777777777777774

...

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.03  E-value=0.0053  Score=55.84  Aligned_cols=124  Identities=17%  Similarity=0.102  Sum_probs=99.8

Q ss_pred             CCChHHHHHHHHhhcCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccC------CCHHHHHHHHHHHHh
Q 029491            1 MGRPDLCFDIIHQVLPYNQQE------DFIFGILAFSLLELGQMSDAEEAAKKGLKINK------HDCWSQHALCHVLQH   68 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~------~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P------~da~A~h~lahvl~~   68 (192)
                      +|+++.++..-+.-|.+..++      --+++++|.++.-.|.++.|.+.|.+++.|.-      -.+.....+|.++.-
T Consensus       208 LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl  287 (639)
T KOG1130|consen  208 LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL  287 (639)
T ss_pred             eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH
Confidence            588888888777666654322      37899999999999999999999999887652      246777899999999


Q ss_pred             cCCHHHHHHHHHHhHhh----ccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhC
Q 029491           69 DCCFKEAVQFMEECSST----WSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELE  128 (192)
Q Consensus        69 ~Gr~~eai~~~~~a~~~----~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~  128 (192)
                      ...++.||.+..+.+.+    .....   .....|-+|.++-.+| ..++|+...+.++....+
T Consensus       288 l~e~~kAI~Yh~rHLaIAqeL~DriG---e~RacwSLgna~~alg-~h~kAl~fae~hl~~s~e  347 (639)
T KOG1130|consen  288 LKEVQKAITYHQRHLAIAQELEDRIG---ELRACWSLGNAFNALG-EHRKALYFAELHLRSSLE  347 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHH
Confidence            99999999999998754    33322   3457899999999999 899999999999888653

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=96.99  E-value=0.0051  Score=58.80  Aligned_cols=117  Identities=15%  Similarity=0.189  Sum_probs=93.7

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHH----------------------------HHHcCCHHHHHHHHHHHhcccC
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFS----------------------------LLELGQMSDAEEAAKKGLKINK   53 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~----------------------------L~e~g~~~eAe~~~rrALaL~P   53 (192)
                      |+...|....+|-++ .|.++..|..+|.+                            ...+++|+++..+.++++++||
T Consensus       438 g~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np  516 (777)
T KOG1128|consen  438 GQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINP  516 (777)
T ss_pred             cccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCc
Confidence            556666666777777 44444444444332                            2235899999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           54 HDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        54 ~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      -....+..+|-+-...++...+...|.+++.+.|+..     ..|-+++-+|+..| +--+|.....+++--
T Consensus       517 lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~-----eaWnNls~ayi~~~-~k~ra~~~l~EAlKc  582 (777)
T KOG1128|consen  517 LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNA-----EAWNNLSTAYIRLK-KKKRAFRKLKEALKC  582 (777)
T ss_pred             cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCch-----hhhhhhhHHHHHHh-hhHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999942     24556999999998 889999999888754

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.98  E-value=0.013  Score=50.60  Aligned_cols=143  Identities=18%  Similarity=0.206  Sum_probs=108.9

Q ss_pred             CChHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH----Hhccc--CCCHHHHHHHHHHHHhcCCHHH
Q 029491            2 GRPDLCFDIIHQVLPYN-QQEDFIFGILAFSLLELGQMSDAEEAAKK----GLKIN--KHDCWSQHALCHVLQHDCCFKE   74 (192)
Q Consensus         2 G~~~~al~~~~ral~~~-p~~~~~~~~laf~L~e~g~~~eAe~~~rr----ALaL~--P~da~A~h~lahvl~~~Gr~~e   74 (192)
                      |.+.-.++.+.+++..+ |.++....-++-+-++.|+...|+..+++    +=.|+  .+..-.+.+.+.++.-+.++.+
T Consensus       191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~  270 (366)
T KOG2796|consen  191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAE  270 (366)
T ss_pred             hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHH
Confidence            45555677788888877 78999999999999999999999999983    33333  3456678899999999999999


Q ss_pred             HHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcCc
Q 029491           75 AVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGE  153 (192)
Q Consensus        75 ai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g~  153 (192)
                      +..++++.++.+|+++   .+.|+  .|++++-+| +.-.|++..+..+...  |.....-..+++-++ .+-|.+...
T Consensus       271 a~r~~~~i~~~D~~~~---~a~Nn--KALcllYlg-~l~DAiK~~e~~~~~~--P~~~l~es~~~nL~t-myEL~Ys~~  340 (366)
T KOG2796|consen  271 AHRFFTEILRMDPRNA---VANNN--KALCLLYLG-KLKDALKQLEAMVQQD--PRHYLHESVLFNLTT-MYELEYSRS  340 (366)
T ss_pred             HHHHHhhccccCCCch---hhhch--HHHHHHHHH-HHHHHHHHHHHHhccC--CccchhhhHHHHHHH-HHHHHhhhh
Confidence            9999999999999865   34454  999999999 8999999999988774  432222223445555 345555443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.95  E-value=0.0067  Score=54.37  Aligned_cols=117  Identities=16%  Similarity=0.093  Sum_probs=96.6

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      +|++++|..++..+++..-|.- ....+  ....-++...=++.+++.++..|++|..+.++|..+...+.+.+|-.+++
T Consensus       276 l~~~~~A~~~i~~~Lk~~~D~~-L~~~~--~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~le  352 (400)
T COG3071         276 LGDHDEAQEIIEDALKRQWDPR-LCRLI--PRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALE  352 (400)
T ss_pred             cCChHHHHHHHHHHHHhccChh-HHHHH--hhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            5899999999999999644333 22222  33456788888899999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL  127 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~  127 (192)
                      .++...|+..    .-++  +|..+..+| +.++|-+.++..+.-..
T Consensus       353 aAl~~~~s~~----~~~~--la~~~~~~g-~~~~A~~~r~e~L~~~~  392 (400)
T COG3071         353 AALKLRPSAS----DYAE--LADALDQLG-EPEEAEQVRREALLLTR  392 (400)
T ss_pred             HHHhcCCChh----hHHH--HHHHHHHcC-ChHHHHHHHHHHHHHhc
Confidence            9999987742    1233  899999999 89999999999988754

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.92  E-value=0.011  Score=54.50  Aligned_cols=118  Identities=9%  Similarity=0.039  Sum_probs=93.7

Q ss_pred             ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 029491            3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC----WSQHALCHVLQHDCCFKEAVQF   78 (192)
Q Consensus         3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da----~A~h~lahvl~~~Gr~~eai~~   78 (192)
                      ....+...+.+.....|+.+.++...|-.+.-.|+.++|++.+.+|+.....-.    -..+.++.++..++++++|...
T Consensus       248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~  327 (468)
T PF10300_consen  248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY  327 (468)
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence            456788888888999999999999999999999999999999999996443333    3456789999999999999999


Q ss_pred             HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCH-------HHHHHHHHHhhhh
Q 029491           79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPM-------RKVLEIYDNHIWK  125 (192)
Q Consensus        79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~-------deAl~~yd~~i~~  125 (192)
                      +.+..+.+.-+..    -+..-.|.+++++| +.       ++|..++.+.-.-
T Consensus       328 f~~L~~~s~WSka----~Y~Y~~a~c~~~l~-~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  328 FLRLLKESKWSKA----FYAYLAAACLLMLG-REEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HHHHHhccccHHH----HHHHHHHHHHHhhc-cchhhhhhHHHHHHHHHHHHHH
Confidence            9999976433222    23445899999998 78       7888888765443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.91  E-value=0.083  Score=45.02  Aligned_cols=123  Identities=9%  Similarity=0.014  Sum_probs=98.2

Q ss_pred             CChHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHH---HHHHHHHHHh-------
Q 029491            2 GRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS---QHALCHVLQH-------   68 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~---~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A---~h~lahvl~~-------   68 (192)
                      |++.+|.+.++++....|..+   .+.-+++++....++|++|+..++|=+.+.|+++.+   ..-.|-+..+       
T Consensus        48 gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~r  127 (254)
T COG4105          48 GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTR  127 (254)
T ss_pred             CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcccc
Confidence            889999999999988888665   678999999999999999999999999999998743   3444444332       


Q ss_pred             -cCCHHHHHHHHHHhHhhccCCCCc-------------chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           69 -DCCFKEAVQFMEECSSTWSSCSSF-------------MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        69 -~Gr~~eai~~~~~a~~~~p~~~~~-------------~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                       +....+|+.-+...+..+|++.-.             +..| --..|.+|+..| .+..|...+++.+..-
T Consensus       128 Dq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~-Em~IaryY~kr~-~~~AA~nR~~~v~e~y  197 (254)
T COG4105         128 DQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH-EMAIARYYLKRG-AYVAAINRFEEVLENY  197 (254)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH-HHHHHHHHHHhc-ChHHHHHHHHHHHhcc
Confidence             345678999999999999996420             1122 235889999998 9999999999999874

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.90  E-value=0.018  Score=51.72  Aligned_cols=83  Identities=19%  Similarity=0.161  Sum_probs=74.6

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |+.......+++.+...|++|..+..+|..+..++.+.+|...++.|++..|. +..+.-+||++..+|++++|-...++
T Consensus       308 ~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e  386 (400)
T COG3071         308 GDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRRE  386 (400)
T ss_pred             CCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHH
Confidence            56677788889999999999999999999999999999999999999999886 56788899999999999999999999


Q ss_pred             hHhh
Q 029491           82 CSST   85 (192)
Q Consensus        82 a~~~   85 (192)
                      ++..
T Consensus       387 ~L~~  390 (400)
T COG3071         387 ALLL  390 (400)
T ss_pred             HHHH
Confidence            8844

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.86  E-value=0.016  Score=49.52  Aligned_cols=122  Identities=14%  Similarity=0.130  Sum_probs=89.3

Q ss_pred             CChHHHHHHHHhhcCCC--CCC----HHHHHHHHHHHHHc-CCHHHHHHHHHHHhcccCCC------HHHHHHHHHHHHh
Q 029491            2 GRPDLCFDIIHQVLPYN--QQE----DFIFGILAFSLLEL-GQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQH   68 (192)
Q Consensus         2 G~~~~al~~~~ral~~~--p~~----~~~~~~laf~L~e~-g~~~eAe~~~rrALaL~P~d------a~A~h~lahvl~~   68 (192)
                      +++.++...+++|+...  .++    +..+..+|-++++. |++++|.+.+++|+.+-..+      ......+|.++..
T Consensus        88 ~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~  167 (282)
T PF14938_consen   88 GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR  167 (282)
T ss_dssp             TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence            36778899999998863  222    46788889999998 99999999999999984322      2345688999999


Q ss_pred             cCCHHHHHHHHHHhHhhccCCCCcch--hh-hHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           69 DCCFKEAVQFMEECSSTWSSCSSFMY--TH-NWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        69 ~Gr~~eai~~~~~a~~~~p~~~~~~~--~h-~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      .|++++|+..+++.....-+.+. +.  .. ......+++|..| |+-.|...+++....
T Consensus       168 l~~y~~A~~~~e~~~~~~l~~~l-~~~~~~~~~l~a~l~~L~~~-D~v~A~~~~~~~~~~  225 (282)
T PF14938_consen  168 LGRYEEAIEIYEEVAKKCLENNL-LKYSAKEYFLKAILCHLAMG-DYVAARKALERYCSQ  225 (282)
T ss_dssp             TT-HHHHHHHHHHHHHTCCCHCT-TGHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHGTT
T ss_pred             hCCHHHHHHHHHHHHHHhhcccc-cchhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhh
Confidence            99999999999998875433221 11  11 2335778999998 899999999987755

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.86  E-value=0.0085  Score=58.37  Aligned_cols=112  Identities=17%  Similarity=0.244  Sum_probs=91.7

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |++..|+.-+.+.+...|+-.++...-|.++...|++++|..+.+.-=.+-|+|--.+-.+-+|+..+|..+++..+|++
T Consensus        23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~  102 (932)
T KOG2053|consen   23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYER  102 (932)
T ss_pred             HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            57888999999999999999999999999999999999999776666667788999999999999999999999999999


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHhCCCCH----HHHHHHHH
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPM----RKVLEIYD  120 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~----deAl~~yd  120 (192)
                      +...+|..      |+--|+=.+|..-+ .|    ..|+++|.
T Consensus       103 ~~~~~P~e------ell~~lFmayvR~~-~yk~qQkaa~~LyK  138 (932)
T KOG2053|consen  103 ANQKYPSE------ELLYHLFMAYVREK-SYKKQQKAALQLYK  138 (932)
T ss_pred             HHhhCCcH------HHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            99999883      23223333343333 33    45677775

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.84  E-value=0.016  Score=52.05  Aligned_cols=154  Identities=18%  Similarity=0.152  Sum_probs=108.4

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh--------------ccc------------CC
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGL--------------KIN------------KH   54 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrAL--------------aL~------------P~   54 (192)
                      +|++.+|+..+.-+...+..++.+..++|-..--.|.|.+|+..+.+|-              .+|            .+
T Consensus        70 LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD  149 (557)
T KOG3785|consen   70 LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD  149 (557)
T ss_pred             hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh
Confidence            5899999999998888777778888899999999999999999877652              222            22


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCC
Q 029491           55 DCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVH  134 (192)
Q Consensus        55 da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~  134 (192)
                      ...-.-.++.+++|+--..|||+.|.+.+..+|..-.     .+-.+|+++..+. -||-+-...+.-++.-  | +|+.
T Consensus       150 ~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a-----lNVy~ALCyyKlD-Yydvsqevl~vYL~q~--p-dSti  220 (557)
T KOG3785|consen  150 TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA-----LNVYMALCYYKLD-YYDVSQEVLKVYLRQF--P-DSTI  220 (557)
T ss_pred             hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh-----hHHHHHHHHHhcc-hhhhHHHHHHHHHHhC--C-CcHH
Confidence            2344557888999999999999999999999988532     2334999999985 7777776666666663  3 3333


Q ss_pred             hHHHHHHHHHHHHhhhcCcccchhchHHHHHHHH
Q 029491          135 PEVYLNALGLLLRVYVRGELDVFGNRLKVLADCV  168 (192)
Q Consensus       135 ~~~~~da~sLL~Rl~l~g~~~~~~~rw~~l~~~~  168 (192)
                      +..+ - ++-+||+--.-.   ..+--+.|++-.
T Consensus       221 A~NL-k-acn~fRl~ngr~---ae~E~k~ladN~  249 (557)
T KOG3785|consen  221 AKNL-K-ACNLFRLINGRT---AEDEKKELADNI  249 (557)
T ss_pred             HHHH-H-HHHHhhhhccch---hHHHHHHHHhcc
Confidence            3222 2 334777754333   234445555543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.84  E-value=0.012  Score=51.17  Aligned_cols=121  Identities=14%  Similarity=-0.033  Sum_probs=66.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHH------------------------------
Q 029491           29 AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQF------------------------------   78 (192)
Q Consensus        29 af~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~------------------------------   78 (192)
                      +..+.+.|++.+|...+..+++.+|++..+...++.+|...|+.++|.+.                              
T Consensus       141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence            44445555555555555555555555555555555555555555433222                              


Q ss_pred             ----HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcCcc
Q 029491           79 ----MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGEL  154 (192)
Q Consensus        79 ----~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g~~  154 (192)
                          +++....+|++..     ...-+|..+...| ++++|+..+=..+.+...-      .+-.-.-.|+=-+++-|..
T Consensus       221 ~~~~l~~~~aadPdd~~-----aa~~lA~~~~~~g-~~e~Ale~Ll~~l~~d~~~------~d~~~Rk~lle~f~~~g~~  288 (304)
T COG3118         221 EIQDLQRRLAADPDDVE-----AALALADQLHLVG-RNEAALEHLLALLRRDRGF------EDGEARKTLLELFEAFGPA  288 (304)
T ss_pred             CHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcC-CHHHHHHHHHHHHHhcccc------cCcHHHHHHHHHHHhcCCC
Confidence                2233455665432     3345888888888 8899988888888775521      1122234444445666655


Q ss_pred             cchhchH
Q 029491          155 DVFGNRL  161 (192)
Q Consensus       155 ~~~~~rw  161 (192)
                      +|+...+
T Consensus       289 Dp~~~~~  295 (304)
T COG3118         289 DPLVLAY  295 (304)
T ss_pred             CHHHHHH
Confidence            4544443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.80  E-value=0.011  Score=49.37  Aligned_cols=94  Identities=12%  Similarity=0.044  Sum_probs=77.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhcccCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHH
Q 029491           27 ILAFSLLELGQMSDAEEAAKKGLKINKHDCW-----SQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHV  101 (192)
Q Consensus        27 ~laf~L~e~g~~~eAe~~~rrALaL~P~da~-----A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~Whl  101 (192)
                      .-|.-+-.+|+|++|..-|.+||++.|.-+.     -+-+.|.++..++..+.||.-+.+++.+||.+.   .+-.  ..
T Consensus       100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~---kAl~--RR  174 (271)
T KOG4234|consen  100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE---KALE--RR  174 (271)
T ss_pred             HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH---HHHH--HH
Confidence            3455677899999999999999999998654     456788999999999999999999999999854   2222  25


Q ss_pred             HHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491          102 ALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus       102 Al~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      |-+|-..- .|++|+.-|.+.+...
T Consensus       175 Aeayek~e-k~eealeDyKki~E~d  198 (271)
T KOG4234|consen  175 AEAYEKME-KYEEALEDYKKILESD  198 (271)
T ss_pred             HHHHHhhh-hHHHHHHHHHHHHHhC
Confidence            77775565 8999999998888764

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.74  E-value=0.0072  Score=46.25  Aligned_cols=62  Identities=16%  Similarity=0.193  Sum_probs=33.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-------ccCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491           21 EDFIFGILAFSLLELGQMSDAEEAAKKGLK-------INKHDC----WSQHALCHVLQHDCCFKEAVQFMEEC   82 (192)
Q Consensus        21 ~~~~~~~laf~L~e~g~~~eAe~~~rrALa-------L~P~da----~A~h~lahvl~~~Gr~~eai~~~~~a   82 (192)
                      |+..|..++-++...|+|+++...+.+||-       |+.+..    -++.+.+.++..+||.+||+..++.+
T Consensus        54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a  126 (144)
T PF12968_consen   54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA  126 (144)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence            456666777777777777777777766663       333322    23444455555555555555555444

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PRK10941 hypothetical protein; Provisional

Probab=96.69  E-value=0.01  Score=50.95  Aligned_cols=69  Identities=16%  Similarity=0.082  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCC
Q 029491           23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSS   91 (192)
Q Consensus        23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~   91 (192)
                      -.+.++=.++.+.+++++|.++.++.|.++|+|+.-+-..|-++...|++..|+.-++..++..|++|.
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~  250 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI  250 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence            456777779999999999999999999999999999999999999999999999999999999999763

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.65  E-value=0.00077  Score=59.51  Aligned_cols=87  Identities=13%  Similarity=0.071  Sum_probs=76.4

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |.++.+++.+.++++++|..+..|...+-++.+.+....|++-+..|+.+||+.+..+-..+.+...+|..+++-..++.
T Consensus       128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~  207 (377)
T KOG1308|consen  128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLAL  207 (377)
T ss_pred             cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHH
Confidence            67788888889999999999999999999999999999999999999999999998888888888889999999999888


Q ss_pred             hHhhccC
Q 029491           82 CSSTWSS   88 (192)
Q Consensus        82 a~~~~p~   88 (192)
                      +..+.-+
T Consensus       208 a~kld~d  214 (377)
T KOG1308|consen  208 ACKLDYD  214 (377)
T ss_pred             HHhcccc
Confidence            8876544

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.63  E-value=0.038  Score=50.89  Aligned_cols=122  Identities=13%  Similarity=0.122  Sum_probs=92.5

Q ss_pred             CChHHHHHHHHhhcCCCC-CCH----HHHHHHHHHHH------HcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcC
Q 029491            2 GRPDLCFDIIHQVLPYNQ-QED----FIFGILAFSLL------ELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC   70 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p-~~~----~~~~~laf~L~------e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~G   70 (192)
                      |+-+..++...++..... ..+    ..+..+.++..      .....++|++...+.++.-|+.+.-....|.++..+|
T Consensus       202 gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g  281 (468)
T PF10300_consen  202 GDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKG  281 (468)
T ss_pred             CcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence            778888888888877332 122    11222222222      3456788999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           71 CFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        71 r~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      +.++|++.++++......-+. +..-..|-+|.+++.++ +|++|...+++.+..
T Consensus       282 ~~~~Ai~~~~~a~~~q~~~~Q-l~~l~~~El~w~~~~~~-~w~~A~~~f~~L~~~  334 (468)
T PF10300_consen  282 NLEEAIESFERAIESQSEWKQ-LHHLCYFELAWCHMFQH-DWEEAAEYFLRLLKE  334 (468)
T ss_pred             CHHHHHHHHHHhccchhhHHh-HHHHHHHHHHHHHHHHc-hHHHHHHHHHHHHhc
Confidence            999999999988843333222 23336888999999998 999999999888765

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.60  E-value=0.024  Score=48.54  Aligned_cols=119  Identities=10%  Similarity=-0.040  Sum_probs=71.9

Q ss_pred             hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491            4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLE-LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC   82 (192)
Q Consensus         4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e-~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a   82 (192)
                      ..+++..+.+|+...+....++...|..-.. .++.+.|..++++++..-|++..-+..-..-+...|+.+.+...++++
T Consensus        17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~   96 (280)
T PF05843_consen   17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERA   96 (280)
T ss_dssp             HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            4567777777775545555555544444334 345555888888888888888777777777777788888888888887


Q ss_pred             HhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        83 ~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      +..-|....  .-.+|=-+.-+-..-| +.+.+..++++....
T Consensus        97 i~~l~~~~~--~~~iw~~~i~fE~~~G-dl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   97 ISSLPKEKQ--SKKIWKKFIEFESKYG-DLESVRKVEKRAEEL  136 (280)
T ss_dssp             CCTSSCHHH--CHHHHHHHHHHHHHHS--HHHHHHHHHHHHHH
T ss_pred             HHhcCchhH--HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence            765443210  0113323444455566 777777777766665

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.59  E-value=0.015  Score=49.40  Aligned_cols=86  Identities=7%  Similarity=-0.023  Sum_probs=75.4

Q ss_pred             cCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHH
Q 029491           35 LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRK  114 (192)
Q Consensus        35 ~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~de  114 (192)
                      ..+|+.|+.++-|||.+||+.+-=+.+.+..+....+++-.....++++++.|+.   ...|+.  ++.+.++.. .|++
T Consensus        23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~---vk~h~f--lg~~~l~s~-~~~e   96 (284)
T KOG4642|consen   23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL---VKAHYF--LGQWLLQSK-GYDE   96 (284)
T ss_pred             hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH---HHHHHH--HHHHHHhhc-cccH
Confidence            3478999999999999999999999999999999999999999999999999884   367876  888888876 6999


Q ss_pred             HHHHHHHhhhhh
Q 029491          115 VLEIYDNHIWKE  126 (192)
Q Consensus       115 Al~~yd~~i~~~  126 (192)
                      |+....++....
T Consensus        97 aI~~Lqra~sl~  108 (284)
T KOG4642|consen   97 AIKVLQRAYSLL  108 (284)
T ss_pred             HHHHHHHHHHHH
Confidence            999999885543

>smart00028 TPR Tetratricopeptide repeats

Probab=96.58  E-value=0.0048  Score=32.77  Aligned_cols=31  Identities=26%  Similarity=0.336  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhcccCC
Q 029491           24 IFGILAFSLLELGQMSDAEEAAKKGLKINKH   54 (192)
Q Consensus        24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~   54 (192)
                      ++..+|..+.+.|++++|+..+++++.++|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4456666677777777777777777776665

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.58  E-value=0.049  Score=41.77  Aligned_cols=93  Identities=12%  Similarity=0.147  Sum_probs=65.8

Q ss_pred             HHHHcCCHHHHHHHHHHHhcccCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCC------c
Q 029491           31 SLLELGQMSDAEEAAKKGLKINKH------------DCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSS------F   92 (192)
Q Consensus        31 ~L~e~g~~~eAe~~~rrALaL~P~------------da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~------~   92 (192)
                      -..+-|-|++|.+.+++|+.....            |+-.|..|+-++...||++|++...++++....+-..      -
T Consensus        18 ~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGk   97 (144)
T PF12968_consen   18 RQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGK   97 (144)
T ss_dssp             HHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccch
Confidence            345678999999999999987643            4566778888999999999999999999864333111      0


Q ss_pred             chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhh
Q 029491           93 MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW  124 (192)
Q Consensus        93 ~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~  124 (192)
                      ++.-.-...|+++-.+| +.++|+..|+.+..
T Consensus        98 lWIaaVfsra~Al~~~G-r~~eA~~~fr~agE  128 (144)
T PF12968_consen   98 LWIAAVFSRAVALEGLG-RKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Confidence            12112235777777898 99999999987644

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.55  E-value=0.0029  Score=53.48  Aligned_cols=62  Identities=19%  Similarity=0.104  Sum_probs=56.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCC
Q 029491           29 AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS   90 (192)
Q Consensus        29 af~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~   90 (192)
                      +..+.+.|+.+.|.+.+.|||++.|+.+..|..+|...+..|+++.|.+.|+++++++|.+.
T Consensus         2 a~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           2 AYMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             cchhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            44577889999999999999999999999999999999999999999999999999999864

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.54  E-value=0.069  Score=50.30  Aligned_cols=121  Identities=12%  Similarity=0.089  Sum_probs=88.9

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------------------------------
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI------------------------------   51 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL------------------------------   51 (192)
                      +..++++..+.   -.++++...+-..|-++...|+|++|...|+.-+.-                              
T Consensus        93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~  169 (652)
T KOG2376|consen   93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPE  169 (652)
T ss_pred             ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccC
Confidence            45666776666   457777888888999999999999999888776332                              


Q ss_pred             cCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc-----cCCCC--cch---hhhHHHHHHHHHhCCCCHHHHHHHHH
Q 029491           52 NKH-DCWSQHALCHVLQHDCCFKEAVQFMEECSSTW-----SSCSS--FMY---THNWWHVALCYLEGHSPMRKVLEIYD  120 (192)
Q Consensus        52 ~P~-da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~-----p~~~~--~~~---~h~~WhlAl~~l~~G~~~deAl~~yd  120 (192)
                      .|. +-...+|.+-++...|+..+|++.++.++++-     ..+..  -..   .-+.-.+|..+...| +.+||..+|.
T Consensus       170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G-qt~ea~~iy~  248 (652)
T KOG2376|consen  170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG-QTAEASSIYV  248 (652)
T ss_pred             CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc-chHHHHHHHH
Confidence            244 55678999999999999999999999994321     11100  000   013335888888898 8999999999


Q ss_pred             Hhhhhh
Q 029491          121 NHIWKE  126 (192)
Q Consensus       121 ~~i~~~  126 (192)
                      ..|...
T Consensus       249 ~~i~~~  254 (652)
T KOG2376|consen  249 DIIKRN  254 (652)
T ss_pred             HHHHhc
Confidence            999886

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.51  E-value=0.0019  Score=59.12  Aligned_cols=90  Identities=13%  Similarity=0.092  Sum_probs=86.0

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      ..++.|.+.+.+|+.++|+.+.+.++.+++....+.|..|..-+.+|++++|...-+++..|.+....|++.+|...++.
T Consensus        18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~   97 (476)
T KOG0376|consen   18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEK   97 (476)
T ss_pred             chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhccCCCC
Q 029491           82 CSSTWSSCSS   91 (192)
Q Consensus        82 a~~~~p~~~~   91 (192)
                      +..+-|+.+.
T Consensus        98 ~~~l~Pnd~~  107 (476)
T KOG0376|consen   98 VKKLAPNDPD  107 (476)
T ss_pred             hhhcCcCcHH
Confidence            9999999753

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.50  E-value=0.014  Score=49.23  Aligned_cols=100  Identities=12%  Similarity=-0.004  Sum_probs=82.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHH
Q 029491           21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWH  100 (192)
Q Consensus        21 ~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~Wh  100 (192)
                      .+..|.-.|.-+--.|-.+-|.--+.++|+++|+-|.+..-+|--+...|+++.|.+.++..++++|...   .+|.+  
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~---Ya~lN--  138 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---YAHLN--  138 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch---HHHhc--
Confidence            3555666666666677777888889999999999999999999999999999999999999999999975   46655  


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491          101 VALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus       101 lAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .|+.++-.| +|.-|.+-+-+....+
T Consensus       139 Rgi~~YY~g-R~~LAq~d~~~fYQ~D  163 (297)
T COG4785         139 RGIALYYGG-RYKLAQDDLLAFYQDD  163 (297)
T ss_pred             cceeeeecC-chHhhHHHHHHHHhcC
Confidence            666666666 9999988887777664

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.39  E-value=0.041  Score=39.50  Aligned_cols=80  Identities=16%  Similarity=0.081  Sum_probs=54.4

Q ss_pred             HHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHH
Q 029491           41 AEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD  120 (192)
Q Consensus        41 Ae~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd  120 (192)
                      ..+..+++++-||+|..+.+.+|-++...|++++|++.+-..++..++...- .+.-. =+.++-+ +| .-+....-|+
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~-~ar~~-ll~~f~~-lg-~~~plv~~~R   82 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDD-AARKR-LLDIFEL-LG-PGDPLVSEYR   82 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCC-HHHHH-HHHHHHH-H--TT-HHHHHHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccccc-HHHHH-HHHHHHH-cC-CCChHHHHHH
Confidence            3466789999999999999999999999999999999999999887765321 22221 1444433 35 4566777777


Q ss_pred             Hhhh
Q 029491          121 NHIW  124 (192)
Q Consensus       121 ~~i~  124 (192)
                      +.+.
T Consensus        83 RkL~   86 (90)
T PF14561_consen   83 RKLA   86 (90)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.32  E-value=0.035  Score=39.85  Aligned_cols=77  Identities=13%  Similarity=-0.017  Sum_probs=60.9

Q ss_pred             HHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 029491            7 CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD--CWSQHALCHVLQHDCCFKEAVQFMEECS   83 (192)
Q Consensus         7 al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d--a~A~h~lahvl~~~Gr~~eai~~~~~a~   83 (192)
                      -++.+++.+..+|+|..+...+|-.+...|++++|.+..-..+..+|+.  ..+.-.+--++...|.-..-+.-+++-+
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL   85 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL   85 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            4566788999999999999999999999999999999999999999876  7788888888888888665555555543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.32  E-value=0.0078  Score=35.49  Aligned_cols=27  Identities=19%  Similarity=0.169  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 029491           25 FGILAFSLLELGQMSDAEEAAKKGLKI   51 (192)
Q Consensus        25 ~~~laf~L~e~g~~~eAe~~~rrALaL   51 (192)
                      +.++|.++...|++++|++.++++|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            455666666666666666666664443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.29  E-value=0.011  Score=33.72  Aligned_cols=33  Identities=12%  Similarity=0.148  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491           56 CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS   88 (192)
Q Consensus        56 a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~   88 (192)
                      +.+++.+|.++..+|++++|+..++++++..|+
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            357889999999999999999999999999874

...

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.29  E-value=0.026  Score=50.71  Aligned_cols=126  Identities=12%  Similarity=0.068  Sum_probs=94.1

Q ss_pred             CCChHHHHHHHHhhcCC--CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC----------CHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPY--NQQED----FIFGILAFSLLELGQMSDAEEAAKKGLKINKH----------DCWSQHALCH   64 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~--~p~~~----~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~----------da~A~h~lah   64 (192)
                      ||.+..+++++++|+..  +-+|+    .+..-+|-......++++|.-..++|++|-..          .+-++.-++.
T Consensus       135 ls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaV  214 (518)
T KOG1941|consen  135 LSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAV  214 (518)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHH
Confidence            35678889999998875  33444    45666777788889999999999999987632          2356667889


Q ss_pred             HHHhcCCHHHHHHHHHHhHhhccCCCCc-chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhh
Q 029491           65 VLQHDCCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL  127 (192)
Q Consensus        65 vl~~~Gr~~eai~~~~~a~~~~p~~~~~-~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~  127 (192)
                      ++-++|+..+|.+..+++..+--....- .++..---+|-.|-+.| +.|.|++.|+.++....
T Consensus       215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~g-d~e~af~rYe~Am~~m~  277 (518)
T KOG1941|consen  215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRG-DLERAFRRYEQAMGTMA  277 (518)
T ss_pred             HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcc-cHhHHHHHHHHHHHHHh
Confidence            9999999999999999998654332210 12222224788888998 89999999999988753

>PRK10941 hypothetical protein; Provisional

Probab=96.21  E-value=0.024  Score=48.70  Aligned_cols=68  Identities=9%  Similarity=0.043  Sum_probs=62.0

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhc
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHD   69 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~   69 (192)
                      ++++.|+.++++.+...|++++-.--.|+.+.+.|.+..|..-.+.-|+..|+|+.+.--...+..+.
T Consensus       195 ~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~  262 (269)
T PRK10941        195 KQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE  262 (269)
T ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence            68899999999999999999999999999999999999999999999999999998877666655444

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.15  E-value=0.037  Score=52.37  Aligned_cols=141  Identities=16%  Similarity=0.107  Sum_probs=107.9

Q ss_pred             CChHHHHHH-HHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH--HHHHHHHHHHHhcCCHHHHHHH
Q 029491            2 GRPDLCFDI-IHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC--WSQHALCHVLQHDCCFKEAVQF   78 (192)
Q Consensus         2 G~~~~al~~-~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da--~A~h~lahvl~~~Gr~~eai~~   78 (192)
                      |++-+++.. +-.++...|.++++|.+-+|-....|..-+|..++++|+-+-|...  -+.-.+|.++...|+..+|--.
T Consensus       192 ~r~~~~~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iI  271 (886)
T KOG4507|consen  192 GRSIDDIGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVI  271 (886)
T ss_pred             hhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhhe
Confidence            455555544 4458889999999999999999999999999999999999988755  4677899999999999999999


Q ss_pred             HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhh
Q 029491           79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYV  150 (192)
Q Consensus        79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l  150 (192)
                      +..|+..-|...+     +..-++..+..+| +|..-+..|+.+...+  |+--...+..-...|-+-||+-
T Consensus       272 LhAA~~dA~~~t~-----n~y~l~~i~aml~-~~N~S~~~ydha~k~~--p~f~q~~~q~~~~ISC~~~L~~  335 (886)
T KOG4507|consen  272 LHAALDDADFFTS-----NYYTLGNIYAMLG-EYNHSVLCYDHALQAR--PGFEQAIKQRKHAISCQQKLEQ  335 (886)
T ss_pred             eehhccCCccccc-----cceeHHHHHHHHh-hhhhhhhhhhhhhccC--cchhHHHHHHHHHHHHHHHHHH
Confidence            9888877655432     3344888898998 8999999999777664  3222222333455666655543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.09  E-value=0.091  Score=39.82  Aligned_cols=91  Identities=13%  Similarity=0.172  Sum_probs=65.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhcccC--------CCHH--------------HHHHHHHHHHhcCCHHHHHHHHHHhHhhc
Q 029491           29 AFSLLELGQMSDAEEAAKKGLKINK--------HDCW--------------SQHALCHVLQHDCCFKEAVQFMEECSSTW   86 (192)
Q Consensus        29 af~L~e~g~~~eAe~~~rrALaL~P--------~da~--------------A~h~lahvl~~~Gr~~eai~~~~~a~~~~   86 (192)
                      |-.....|+.+++.+.+++|+++=.        ...|              +...++..+...|++++++..+++++..+
T Consensus        13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d   92 (146)
T PF03704_consen   13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD   92 (146)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence            4445677888999999999998762        2233              34556777888999999999999999999


Q ss_pred             cCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           87 SSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        87 p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      |-+-   ..|.  .+-.++...| +..+|++.|++....
T Consensus        93 P~~E---~~~~--~lm~~~~~~g-~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   93 PYDE---EAYR--LLMRALAAQG-RRAEALRVYERYRRR  125 (146)
T ss_dssp             TT-H---HHHH--HHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred             CCCH---HHHH--HHHHHHHHCc-CHHHHHHHHHHHHHH
Confidence            8853   2333  3666778888 999999999877554

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.05  E-value=0.29  Score=42.64  Aligned_cols=87  Identities=16%  Similarity=0.053  Sum_probs=78.3

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----------------------------------
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKK----------------------------------   47 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rr----------------------------------   47 (192)
                      |++.++...+..++..+|+.+.+...++-++.++|+.++|.+....                                  
T Consensus       148 e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~  227 (304)
T COG3118         148 EDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQR  227 (304)
T ss_pred             cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            7888999999999999999999999999999999999999998654                                  


Q ss_pred             HhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491           48 GLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS   88 (192)
Q Consensus        48 ALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~   88 (192)
                      .++-||+|..+-+.++.++...||.++|.+.+-..++.+-.
T Consensus       228 ~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~  268 (304)
T COG3118         228 RLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG  268 (304)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            13345999999999999999999999999999999998544

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.98  E-value=0.015  Score=34.19  Aligned_cols=28  Identities=11%  Similarity=0.330  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhHhh
Q 029491           58 SQHALCHVLQHDCCFKEAVQFMEECSST   85 (192)
Q Consensus        58 A~h~lahvl~~~Gr~~eai~~~~~a~~~   85 (192)
                      ++.++|.++..+|++++|+.++++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3556666677777777777777665533

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.92  E-value=0.092  Score=48.71  Aligned_cols=88  Identities=9%  Similarity=-0.100  Sum_probs=82.2

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      ++...|++.++|||..+..+.-.+.-++-.-+.+.....|..+..||+.+=|.--.-+.-..++-++.|+.+-+...+++
T Consensus        87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqifer  166 (677)
T KOG1915|consen   87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFER  166 (677)
T ss_pred             HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            45788999999999999888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhccCC
Q 029491           82 CSSTWSSC   89 (192)
Q Consensus        82 a~~~~p~~   89 (192)
                      ++.-.|+.
T Consensus       167 W~~w~P~e  174 (677)
T KOG1915|consen  167 WMEWEPDE  174 (677)
T ss_pred             HHcCCCcH
Confidence            99888773

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.91  E-value=0.19  Score=42.92  Aligned_cols=96  Identities=10%  Similarity=0.044  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHH
Q 029491           24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH-DCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVA  102 (192)
Q Consensus        24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~-~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlA  102 (192)
                      ++..+.-.....+..++|..++.+|+.-.+-....+-+.|..-.. .++.+-|...++..+...|.+.     .+|++..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~-----~~~~~Y~   77 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP-----DFWLEYL   77 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H-----HHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH-----HHHHHHH
Confidence            444455555566669999999999997666677777777877555 4555559999999999998853     3788888


Q ss_pred             HHHHhCCCCHHHHHHHHHHhhhh
Q 029491          103 LCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus       103 l~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      -+++..| +.+.+..+|++.+..
T Consensus        78 ~~l~~~~-d~~~aR~lfer~i~~   99 (280)
T PF05843_consen   78 DFLIKLN-DINNARALFERAISS   99 (280)
T ss_dssp             HHHHHTT--HHHHHHHHHHHCCT
T ss_pred             HHHHHhC-cHHHHHHHHHHHHHh
Confidence            9999998 899999999999764

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.78  E-value=0.0042  Score=54.96  Aligned_cols=87  Identities=7%  Similarity=-0.131  Sum_probs=73.3

Q ss_pred             HcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHH
Q 029491           34 ELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR  113 (192)
Q Consensus        34 e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~d  113 (192)
                      -.|.++.|++.+-+|+.+||..+..+...+.|+...++...+|+-+..++.++|+..   ...-+  .+.++..+| +++
T Consensus       126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa---~~ykf--rg~A~rllg-~~e  199 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA---KGYKF--RGYAERLLG-NWE  199 (377)
T ss_pred             cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccc---cccch--hhHHHHHhh-chH
Confidence            467899999999999999999999999999999999999999999999999999964   22233  455566667 788


Q ss_pred             HHHHHHHHhhhhh
Q 029491          114 KVLEIYDNHIWKE  126 (192)
Q Consensus       114 eAl~~yd~~i~~~  126 (192)
                      ++-..++.+...+
T Consensus       200 ~aa~dl~~a~kld  212 (377)
T KOG1308|consen  200 EAAHDLALACKLD  212 (377)
T ss_pred             HHHHHHHHHHhcc
Confidence            8888877777664

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.76  E-value=0.3  Score=42.22  Aligned_cols=141  Identities=19%  Similarity=0.160  Sum_probs=94.1

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcC--CHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC--CFKEAVQFM   79 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~G--r~~eai~~~   79 (192)
                      |++++|++...+     .+.-.+..+--+++....+++-|+...++...++-+-.-..-+-++|-..+|  ...+|.-.|
T Consensus       122 ~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyif  196 (299)
T KOG3081|consen  122 GDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIF  196 (299)
T ss_pred             CChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            445555554443     2222344444457777888888888888888888776655566666666655  466777778


Q ss_pred             HHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcCcccchhc
Q 029491           80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGN  159 (192)
Q Consensus        80 ~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g~~~~~~~  159 (192)
                      ++--...|..+.   .-+  +.|.+++.+| +|+||..+.+.++...  +  + .+..   -++|.-.-.+.|.+.+|.+
T Consensus       197 eE~s~k~~~T~~---lln--G~Av~~l~~~-~~eeAe~lL~eaL~kd--~--~-dpet---L~Nliv~a~~~Gkd~~~~~  262 (299)
T KOG3081|consen  197 EELSEKTPPTPL---LLN--GQAVCHLQLG-RYEEAESLLEEALDKD--A--K-DPET---LANLIVLALHLGKDAEVTE  262 (299)
T ss_pred             HHHhcccCCChH---HHc--cHHHHHHHhc-CHHHHHHHHHHHHhcc--C--C-CHHH---HHHHHHHHHHhCCChHHHH
Confidence            887775555432   223  5999999999 9999999999999885  2  1 2333   3455556677888766666


Q ss_pred             hH
Q 029491          160 RL  161 (192)
Q Consensus       160 rw  161 (192)
                      |-
T Consensus       263 r~  264 (299)
T KOG3081|consen  263 RN  264 (299)
T ss_pred             HH
Confidence            64

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.66  E-value=0.18  Score=41.53  Aligned_cols=94  Identities=15%  Similarity=0.164  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhHhh-ccCCCCcchhhhHHH
Q 029491           25 FGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFMEECSST-WSSCSSFMYTHNWWH  100 (192)
Q Consensus        25 ~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---a~A~h~lahvl~~~Gr~~eai~~~~~a~~~-~p~~~~~~~~h~~Wh  100 (192)
                      .-.+|-+..|+|++++|+...+.++..-.+.   +-+--.++.|+..+|.+++|+..++.-... |..    +..+.   
T Consensus        92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~----~~~el---  164 (207)
T COG2976          92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA----IVAEL---  164 (207)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH----HHHHH---
Confidence            3456778899999999999999999865553   356678999999999999999999876533 211    12333   


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491          101 VALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus       101 lAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .|-.++..| +-++|...|.+++...
T Consensus       165 rGDill~kg-~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         165 RGDILLAKG-DKQEARAAYEKALESD  189 (207)
T ss_pred             hhhHHHHcC-chHHHHHHHHHHHHcc
Confidence            678889999 8999999999999874

>smart00028 TPR Tetratricopeptide repeats

Probab=95.65  E-value=0.023  Score=29.92  Aligned_cols=32  Identities=13%  Similarity=0.044  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491           57 WSQHALCHVLQHDCCFKEAVQFMEECSSTWSS   88 (192)
Q Consensus        57 ~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~   88 (192)
                      .++..+|.++..+|++++|+..+++++...|.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            45678888888888888888888888877664

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.56  E-value=0.044  Score=47.45  Aligned_cols=88  Identities=14%  Similarity=0.083  Sum_probs=75.2

Q ss_pred             CChHHHHHHHHhhcCC----C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHH
Q 029491            2 GRPDLCFDIIHQVLPY----N--QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEA   75 (192)
Q Consensus         2 G~~~~al~~~~ral~~----~--p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~ea   75 (192)
                      ||...|-..++++-..    +  ...-.++-+.++++.-.++|.+|-..+.+.+..+|.++.+..+.|-++.+.|+..+|
T Consensus       226 GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DA  305 (366)
T KOG2796|consen  226 GDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDA  305 (366)
T ss_pred             ccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHH
Confidence            6666676666654332    1  234577888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHhhccCC
Q 029491           76 VQFMEECSSTWSSC   89 (192)
Q Consensus        76 i~~~~~a~~~~p~~   89 (192)
                      +..++++++..|..
T Consensus       306 iK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  306 LKQLEAMVQQDPRH  319 (366)
T ss_pred             HHHHHHHhccCCcc
Confidence            99999999999883

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.53  E-value=0.042  Score=47.22  Aligned_cols=68  Identities=16%  Similarity=0.104  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCC
Q 029491           23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS   90 (192)
Q Consensus        23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~   90 (192)
                      -...++=..+.++++++.|.....|.+.++|.|+.-+-..|+++...|...-|+.-++..++.-|+.+
T Consensus       182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~  249 (269)
T COG2912         182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP  249 (269)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence            44455556889999999999999999999999999999999999999999999999999999988864

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.50  E-value=0.29  Score=44.00  Aligned_cols=119  Identities=17%  Similarity=0.190  Sum_probs=86.6

Q ss_pred             CChHHHHHHHHhhc-CCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCC
Q 029491            2 GRPDLCFDIIHQVL-PYNQQEDFIFGILAFSLLE---------LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC   71 (192)
Q Consensus         2 G~~~~al~~~~ral-~~~p~~~~~~~~laf~L~e---------~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr   71 (192)
                      |+.++|++.+..++ +..+.++..++++|-++-.         ...+++|++.|++|.+++| |-+.=-|++..+...|.
T Consensus       196 gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~  274 (374)
T PF13281_consen  196 GDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGH  274 (374)
T ss_pred             CCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCC
Confidence            88999999999954 4677899999999987643         2357889999999999995 66777888888888887


Q ss_pred             HHHHHHHHHHhH--------hhccCCCCcchhhhHHHHHHH---HHhCCCCHHHHHHHHHHhhhhh
Q 029491           72 FKEAVQFMEECS--------STWSSCSSFMYTHNWWHVALC---YLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        72 ~~eai~~~~~a~--------~~~p~~~~~~~~h~~WhlAl~---~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ..+...-+++..        +.....+    .-.+|-.|-+   .+-.| ++++|.+.+++.+...
T Consensus       275 ~~~~~~el~~i~~~l~~llg~kg~~~~----~~dYWd~ATl~Ea~vL~~-d~~ka~~a~e~~~~l~  335 (374)
T PF13281_consen  275 DFETSEELRKIGVKLSSLLGRKGSLEK----MQDYWDVATLLEASVLAG-DYEKAIQAAEKAFKLK  335 (374)
T ss_pred             cccchHHHHHHHHHHHHHHHhhccccc----cccHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhcC
Confidence            555543333322        2221111    2267765543   35577 8999999999999773

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.45  E-value=0.033  Score=32.72  Aligned_cols=29  Identities=17%  Similarity=0.321  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhHhhc
Q 029491           58 SQHALCHVLQHDCCFKEAVQFMEECSSTW   86 (192)
Q Consensus        58 A~h~lahvl~~~Gr~~eai~~~~~a~~~~   86 (192)
                      +++++|.++..+|++++|+.++++++.+.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            45555555555555555555555555443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.44  E-value=0.031  Score=31.29  Aligned_cols=31  Identities=10%  Similarity=0.199  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491           58 SQHALCHVLQHDCCFKEAVQFMEECSSTWSS   88 (192)
Q Consensus        58 A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~   88 (192)
                      |+..+|.++..+|++++|+..+++.+...|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            3444555555555555555555555555443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.42  E-value=0.046  Score=35.54  Aligned_cols=40  Identities=20%  Similarity=0.150  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHH
Q 029491           24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALC   63 (192)
Q Consensus        24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~la   63 (192)
                      .+..+|.+....|+|++|....++.|.++|+|..|.--..
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~   42 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE   42 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            3567899999999999999999999999999998765443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.38  E-value=0.033  Score=31.15  Aligned_cols=33  Identities=21%  Similarity=0.107  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC
Q 029491           23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD   55 (192)
Q Consensus        23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d   55 (192)
                      +++..+|.++.+.|++++|.+.+++.+...|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            357789999999999999999999999999985

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.35  E-value=0.24  Score=44.56  Aligned_cols=105  Identities=10%  Similarity=-0.002  Sum_probs=80.1

Q ss_pred             ChHHHHHHHHhhcCC----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HhcccCCCHHHHHHHHHHHHh------
Q 029491            3 RPDLCFDIIHQVLPY----NQQEDFIFGILAFSLLE---LGQMSDAEEAAKK-GLKINKHDCWSQHALCHVLQH------   68 (192)
Q Consensus         3 ~~~~al~~~~ral~~----~p~~~~~~~~laf~L~e---~g~~~eAe~~~rr-ALaL~P~da~A~h~lahvl~~------   68 (192)
                      +++.|...++..-+.    -++.+.+...+||+|-.   .|+.++|+..... ...-++.++..+--+|-++-.      
T Consensus       156 dydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~  235 (374)
T PF13281_consen  156 DYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESN  235 (374)
T ss_pred             hHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcC
Confidence            567788887765444    45678899999999999   9999999999999 555677899988888887632      


Q ss_pred             ---cCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHH
Q 029491           69 ---DCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR  113 (192)
Q Consensus        69 ---~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~d  113 (192)
                         ....++||.+|.++.+..|+.      |..=|+|..+...|.+++
T Consensus       236 ~~d~~~ldkAi~~Y~kgFe~~~~~------Y~GIN~AtLL~~~g~~~~  277 (374)
T PF13281_consen  236 FTDRESLDKAIEWYRKGFEIEPDY------YSGINAATLLMLAGHDFE  277 (374)
T ss_pred             ccchHHHHHHHHHHHHHHcCCccc------cchHHHHHHHHHcCCccc
Confidence               335789999999999998663      234457777766673333

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.30  E-value=0.3  Score=42.16  Aligned_cols=79  Identities=16%  Similarity=0.095  Sum_probs=65.0

Q ss_pred             HHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhh
Q 029491            7 CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSST   85 (192)
Q Consensus         7 al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~   85 (192)
                      |.-.++.--...|-.+..+.-.|.+.+.+|+|++|+...+.||.-+|++|..+.|+-..-.++|...|...-+-.-+..
T Consensus       192 AfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~  270 (299)
T KOG3081|consen  192 AFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL  270 (299)
T ss_pred             HHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence            3334444444456667778888899999999999999999999999999999999999999999999988776666654

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=95.26  E-value=0.025  Score=30.97  Aligned_cols=24  Identities=21%  Similarity=0.162  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHH
Q 029491           57 WSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus        57 ~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      +++.++|.++..+|++++|.+.++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            344444555555555555544443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.20  E-value=0.038  Score=48.82  Aligned_cols=64  Identities=11%  Similarity=0.101  Sum_probs=53.5

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHV   65 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahv   65 (192)
                      |..+.|...++-|+.++|+++.++.-+|-..++.++.-+|-.++-+||.+.|.+..|+.+.+.+
T Consensus       130 Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  130 GKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             cchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            6777888888888888888888888888888888888888888888888888888888776644

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.18  E-value=0.05  Score=31.90  Aligned_cols=25  Identities=16%  Similarity=0.209  Sum_probs=15.4

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491          101 VALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus       101 lAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +|.++...| ++++|..++++++...
T Consensus         8 la~~~~~~g-~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    8 LANAYRAQG-RYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHCT--HHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhh-hcchhhHHHHHHHHHH
Confidence            666666666 6666666666666554

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.09  E-value=0.039  Score=46.74  Aligned_cols=56  Identities=16%  Similarity=0.122  Sum_probs=53.0

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW   57 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~   57 (192)
                      |+.+.+.+.+.|++++.|+...-+.-+|+..+..|+++.|.+.+++.|+++|.|--
T Consensus         9 ~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           9 GDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             CChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            78889999999999999999999999999999999999999999999999998753

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.82  E-value=1  Score=35.82  Aligned_cols=85  Identities=15%  Similarity=0.125  Sum_probs=69.7

Q ss_pred             HHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCH
Q 029491           33 LELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPM  112 (192)
Q Consensus        33 ~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~  112 (192)
                      ...++.++++.+....-.|.|+.+.....-|..+..+|++.||+..+++....-|..+   .+-.-  +|+|+..+|   
T Consensus        21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p---~~kAL--lA~CL~~~~---   92 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP---YAKAL--LALCLYALG---   92 (160)
T ss_pred             HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh---HHHHH--HHHHHHHcC---
Confidence            4567999999999999999999999999999999999999999999999877766543   22222  788887877   


Q ss_pred             HHHHHHHHHhhhh
Q 029491          113 RKVLEIYDNHIWK  125 (192)
Q Consensus       113 deAl~~yd~~i~~  125 (192)
                      |..|+.|-..+-.
T Consensus        93 D~~Wr~~A~evle  105 (160)
T PF09613_consen   93 DPSWRRYADEVLE  105 (160)
T ss_pred             ChHHHHHHHHHHh
Confidence            4779988775554

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.80  E-value=0.27  Score=39.14  Aligned_cols=72  Identities=11%  Similarity=-0.052  Sum_probs=62.4

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFK   73 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~   73 (192)
                      ++.+++...+...--+.|..+.+...-|..+..+|++.+|+...|...+-.|..+.+-.-++.++..+|+++
T Consensus        24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~   95 (160)
T PF09613_consen   24 GDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS   95 (160)
T ss_pred             CChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence            456666666665555789999999999999999999999999999999999999999999999998888764

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.75  E-value=0.6  Score=43.52  Aligned_cols=116  Identities=9%  Similarity=-0.019  Sum_probs=86.2

Q ss_pred             ChHHHHHHHHhhcCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 029491            3 RPDLCFDIIHQVLPYNQ----QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQF   78 (192)
Q Consensus         3 ~~~~al~~~~ral~~~p----~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~   78 (192)
                      +.+..++.++.++.+.|    ..+-.+.|+|--...+-++..|....-.|+.+.|.+-- .-..-..-...+.++.....
T Consensus       381 d~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl-Fk~YIelElqL~efDRcRkL  459 (677)
T KOG1915|consen  381 DVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL-FKGYIELELQLREFDRCRKL  459 (677)
T ss_pred             hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH-HHHHHHHHHHHhhHHHHHHH
Confidence            45667778888888777    44666777777777788888888888888888888652 22222334466888888888


Q ss_pred             HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      |++.+.-.|.+     +..|-..|-+-..+| +.|.|.++|+-+|..
T Consensus       460 YEkfle~~Pe~-----c~~W~kyaElE~~Lg-dtdRaRaifelAi~q  500 (677)
T KOG1915|consen  460 YEKFLEFSPEN-----CYAWSKYAELETSLG-DTDRARAIFELAISQ  500 (677)
T ss_pred             HHHHHhcChHh-----hHHHHHHHHHHHHhh-hHHHHHHHHHHHhcC
Confidence            88888888773     335656777777788 899999999888877

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.71  E-value=0.046  Score=29.90  Aligned_cols=26  Identities=27%  Similarity=0.198  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 029491           22 DFIFGILAFSLLELGQMSDAEEAAKK   47 (192)
Q Consensus        22 ~~~~~~laf~L~e~g~~~eAe~~~rr   47 (192)
                      |.++.++|.++..+|++++|+..+++
T Consensus         1 ~~a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    1 PRARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            46788999999999999999998874

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=94.70  E-value=0.12  Score=45.80  Aligned_cols=86  Identities=19%  Similarity=0.100  Sum_probs=68.1

Q ss_pred             ChHHHHHHHHhhcCCC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 029491            3 RPDLCFDIIHQVLPYN---QQ-EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQF   78 (192)
Q Consensus         3 ~~~~al~~~~ral~~~---p~-~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~   78 (192)
                      ++..|..++...|...   |+ ++..+++.|-+....|.|..|+.-+.+|+.++|.+.-|...=|-++....++++|+.|
T Consensus        96 ryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw  175 (390)
T KOG0551|consen   96 RYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNW  175 (390)
T ss_pred             hHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHH
Confidence            5667788888877754   32 3577788888888888888888888888888888888888888888888888888888


Q ss_pred             HHHhHhhccC
Q 029491           79 MEECSSTWSS   88 (192)
Q Consensus        79 ~~~a~~~~p~   88 (192)
                      +++-+.+...
T Consensus       176 ~ee~~~~d~e  185 (390)
T KOG0551|consen  176 CEEGLQIDDE  185 (390)
T ss_pred             HhhhhhhhHH
Confidence            8887765433

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.69  E-value=0.51  Score=40.30  Aligned_cols=104  Identities=9%  Similarity=0.088  Sum_probs=81.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhh
Q 029491           21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW---SQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN   97 (192)
Q Consensus        21 ~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~---A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~   97 (192)
                      .+..+..-|......|++++|...+++.....|.++|   +.-.++-++.+.|++++|+...++-+++.|.+++.  ...
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~--dY~  110 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA--DYA  110 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh--hHH
Confidence            3567778888899999999999999999999999886   56778999999999999999999999999998873  233


Q ss_pred             HHHHHHHHHhCCC-------CHHHHHHHHHHhhhhh
Q 029491           98 WWHVALCYLEGHS-------PMRKVLEIYDNHIWKE  126 (192)
Q Consensus        98 ~WhlAl~~l~~G~-------~~deAl~~yd~~i~~~  126 (192)
                      ..-.+++++..=+       ...+|..-+.+-|..-
T Consensus       111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry  146 (254)
T COG4105         111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY  146 (254)
T ss_pred             HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC
Confidence            3346666554211       2346667777777775

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=94.66  E-value=0.94  Score=41.33  Aligned_cols=86  Identities=14%  Similarity=0.141  Sum_probs=56.8

Q ss_pred             CChHHHHHHHHhhcCC---CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHH
Q 029491            2 GRPDLCFDIIHQVLPY---NQQ-----EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFK   73 (192)
Q Consensus         2 G~~~~al~~~~ral~~---~p~-----~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~   73 (192)
                      |+++.++..+.+....   .++     -+..+...+..+... +...|...+.+++.|.|+.+-+...-+..+...|+..
T Consensus       202 gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda-dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~r  280 (531)
T COG3898         202 GDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA-DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLR  280 (531)
T ss_pred             CChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchh
Confidence            5566666655543331   222     123334444444333 3555666777888888998888888889999999999


Q ss_pred             HHHHHHHHhHhhccC
Q 029491           74 EAVQFMEECSSTWSS   88 (192)
Q Consensus        74 eai~~~~~a~~~~p~   88 (192)
                      +|-..+|.+-+..|+
T Consensus       281 Kg~~ilE~aWK~ePH  295 (531)
T COG3898         281 KGSKILETAWKAEPH  295 (531)
T ss_pred             hhhhHHHHHHhcCCC
Confidence            999998888777666

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=93.88  E-value=0.21  Score=44.31  Aligned_cols=61  Identities=11%  Similarity=-0.047  Sum_probs=56.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCC
Q 029491           29 AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC   89 (192)
Q Consensus        29 af~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~   89 (192)
                      |--....|..++|...++.||+++|+++.++..+|...+|..+.-+|-..|-+|+.+.|.+
T Consensus       123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~n  183 (472)
T KOG3824|consen  123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGN  183 (472)
T ss_pred             HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCc
Confidence            4445678999999999999999999999999999999999999999999999999998874

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=93.84  E-value=0.74  Score=47.53  Aligned_cols=119  Identities=14%  Similarity=0.093  Sum_probs=97.1

Q ss_pred             ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC--CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH--DCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~--da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      ..++|-..+++-+....+..-++.+++-.|..+++-++|.+...|||.--|.  +....---|...+..|+.+.|...++
T Consensus      1545 k~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfE 1624 (1710)
T KOG1070|consen 1545 KNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFE 1624 (1710)
T ss_pred             cchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHH
Confidence            3456666666666666677888899999999999999999999999999998  88888888999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL  127 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~  127 (192)
                      ..+..+|.-.     ..|--+.-.-+..| +.+-+..+|++.|....
T Consensus      1625 gll~ayPKRt-----DlW~VYid~eik~~-~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1625 GLLSAYPKRT-----DLWSVYIDMEIKHG-DIKYVRDLFERVIELKL 1665 (1710)
T ss_pred             HHHhhCccch-----hHHHHHHHHHHccC-CHHHHHHHHHHHHhcCC
Confidence            9999998843     35533444455677 78899999999998864

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.75  E-value=1.4  Score=38.27  Aligned_cols=118  Identities=10%  Similarity=0.042  Sum_probs=98.2

Q ss_pred             ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHH-HHHHHHH
Q 029491            3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFK-EAVQFME   80 (192)
Q Consensus         3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g-~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~-eai~~~~   80 (192)
                      +.++|++..+-++.++|.+-.++...=.+|.+.+ ++.+=.+...+.++-||.|-..+|-.-.+.++.|.+. .-+++..
T Consensus        58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~  137 (318)
T KOG0530|consen   58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTK  137 (318)
T ss_pred             cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHH
Confidence            4578888999999999999888877777888777 7777788889999999999999999999999999998 8899999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ..++....+     .|.|-|.-=+...-+ .++.-++..+..|..+
T Consensus       138 ~~l~~DaKN-----YHaWshRqW~~r~F~-~~~~EL~y~~~Lle~D  177 (318)
T KOG0530|consen  138 LMLDDDAKN-----YHAWSHRQWVLRFFK-DYEDELAYADELLEED  177 (318)
T ss_pred             HHHhccccc-----hhhhHHHHHHHHHHh-hHHHHHHHHHHHHHHh
Confidence            999976663     566666555556667 6999898888877764

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=93.71  E-value=0.22  Score=46.84  Aligned_cols=85  Identities=12%  Similarity=0.081  Sum_probs=76.3

Q ss_pred             hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG---QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g---~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      ...++..+.+++...|+..+.+.+.|-+++..+   +.-.|..-+-.|+.+||-.--||..|+.+|.+.+|..||+.+..
T Consensus       390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~  469 (758)
T KOG1310|consen  390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHW  469 (758)
T ss_pred             HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHH
Confidence            456778888999999999999999999998754   55568888999999999999999999999999999999999999


Q ss_pred             HhHhhccC
Q 029491           81 ECSSTWSS   88 (192)
Q Consensus        81 ~a~~~~p~   88 (192)
                      ...-..|.
T Consensus       470 alq~~~Pt  477 (758)
T KOG1310|consen  470 ALQMSFPT  477 (758)
T ss_pred             HHhhcCch
Confidence            88888775

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=93.69  E-value=0.15  Score=46.87  Aligned_cols=111  Identities=7%  Similarity=-0.088  Sum_probs=86.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhC
Q 029491           29 AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEG  108 (192)
Q Consensus        29 af~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~  108 (192)
                      +......+.|+.|...|-+|+.|+||.+.-..+.+-++...+.+.+|+.-..+++++.|...   .+..  --|.+.+.+
T Consensus        11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~---K~Y~--rrg~a~m~l   85 (476)
T KOG0376|consen   11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYI---KAYV--RRGTAVMAL   85 (476)
T ss_pred             HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhh---heee--eccHHHHhH
Confidence            44455678999999999999999999999999999999999999999999999999998854   2222  267778888


Q ss_pred             CCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHh
Q 029491          109 HSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRV  148 (192)
Q Consensus       109 G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl  148 (192)
                      | .+-+|+..|+......  | +-+...-.++-+..+=+.
T Consensus        86 ~-~~~~A~~~l~~~~~l~--P-nd~~~~r~~~Ec~~~vs~  121 (476)
T KOG0376|consen   86 G-EFKKALLDLEKVKKLA--P-NDPDATRKIDECNKIVSE  121 (476)
T ss_pred             H-HHHHHHHHHHHhhhcC--c-CcHHHHHHHHHHHHHHHH
Confidence            7 8999999998766553  3 222234445666655544

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.59  E-value=0.51  Score=42.61  Aligned_cols=122  Identities=13%  Similarity=0.108  Sum_probs=87.4

Q ss_pred             ChHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            3 RPDLCFDIIHQVLPYNQQ-EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         3 ~~~~al~~~~ral~~~p~-~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      ++..|+...+-.+-.+.+ .....--+|+..-..|+|++|...+.-+..-+--++....+++-++...|...||....++
T Consensus        37 DytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k  116 (557)
T KOG3785|consen   37 DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK  116 (557)
T ss_pred             cchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence            456666666666654432 2355566788899999999999999999887777888899999999999999999999888


Q ss_pred             hHhhccCCCC--------------cchhhh--------HHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           82 CSSTWSSCSS--------------FMYTHN--------WWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        82 a~~~~p~~~~--------------~~~~h~--------~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +-.. |-+..              .+..|.        ..-+|-.++..- .|.+|+.+|.+.+...
T Consensus       117 a~k~-pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~-HYQeAIdvYkrvL~dn  181 (557)
T KOG3785|consen  117 APKT-PLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRM-HYQEAIDVYKRVLQDN  181 (557)
T ss_pred             CCCC-hHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHH-HHHHHHHHHHHHHhcC
Confidence            7521 10000              011111        112666677765 8999999999888763

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=93.57  E-value=0.74  Score=42.94  Aligned_cols=85  Identities=2%  Similarity=-0.220  Sum_probs=73.2

Q ss_pred             HHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhHhh
Q 029491            7 CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC-FKEAVQFMEECSST   85 (192)
Q Consensus         7 al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr-~~eai~~~~~a~~~   85 (192)
                      -...+++|+...+.|.-.+.++.--....+-+.+--..+.++|..+|++|..|--.|-=.+..++ ++.+.+.+.+.++.
T Consensus        90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~  169 (568)
T KOG2396|consen   90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF  169 (568)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence            45678889998998988887776555566668888899999999999999999988888888887 99999999999999


Q ss_pred             ccCCCC
Q 029491           86 WSSCSS   91 (192)
Q Consensus        86 ~p~~~~   91 (192)
                      +|++|.
T Consensus       170 npdsp~  175 (568)
T KOG2396|consen  170 NPDSPK  175 (568)
T ss_pred             CCCChH
Confidence            999874

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=93.51  E-value=0.11  Score=47.47  Aligned_cols=109  Identities=15%  Similarity=0.130  Sum_probs=81.5

Q ss_pred             CCChHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHh------cccCCCHHHHHHHHHHHHhcC
Q 029491            1 MGRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGL------KINKHDCWSQHALCHVLQHDC   70 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~----~~~~~~laf~L~e~g~~~eAe~~~rrAL------aL~P~da~A~h~lahvl~~~G   70 (192)
                      +|+.....+.++.|+..-.+|    +..++.+|.++...++|++|.+.-..=|      .=.-..+-+..++|.++-+.|
T Consensus        30 ~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G  109 (639)
T KOG1130|consen   30 MGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKG  109 (639)
T ss_pred             ccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhc
Confidence            588888999999999986655    5778899999999999999998644333      333456778889999999999


Q ss_pred             CHHHHHHHHHHhHhhccCCCC-cchhhhHHHHHHHHHhCC
Q 029491           71 CFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGH  109 (192)
Q Consensus        71 r~~eai~~~~~a~~~~p~~~~-~~~~h~~WhlAl~~l~~G  109 (192)
                      +++||+-++.+.+..--..+. +......+++|..|-+.|
T Consensus       110 ~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakG  149 (639)
T KOG1130|consen  110 AFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKG  149 (639)
T ss_pred             ccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcc
Confidence            999999999998854322111 123344556777776655

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=93.47  E-value=2.2  Score=33.73  Aligned_cols=84  Identities=13%  Similarity=0.055  Sum_probs=69.2

Q ss_pred             HcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHH
Q 029491           34 ELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR  113 (192)
Q Consensus        34 e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~d  113 (192)
                      ..++.++++.+....=-|.|+.+....--|..+...|+..||+..+++..+.-+..|   .+-.-  +|.|+..+|   |
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p---~~kAL--~A~CL~al~---D   93 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP---YGKAL--LALCLNAKG---D   93 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch---HHHHH--HHHHHHhcC---C
Confidence            488999999999999999999999999999999999999999999999887765533   12222  777877877   4


Q ss_pred             HHHHHHHHhhhh
Q 029491          114 KVLEIYDNHIWK  125 (192)
Q Consensus       114 eAl~~yd~~i~~  125 (192)
                      ..|+.|-..+-.
T Consensus        94 p~Wr~~A~~~le  105 (153)
T TIGR02561        94 AEWHVHADEVLA  105 (153)
T ss_pred             hHHHHHHHHHHH
Confidence            778888776665

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=92.92  E-value=5.1  Score=34.94  Aligned_cols=122  Identities=8%  Similarity=-0.011  Sum_probs=91.4

Q ss_pred             HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh---cCCHHHHHHHHHH
Q 029491            5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH---DCCFKEAVQFMEE   81 (192)
Q Consensus         5 ~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~---~Gr~~eai~~~~~   81 (192)
                      +.-+..++|||..+|++...+-.+=-...+...-++-.+..++++..+|+++..+...-.....   ...+.+-...|.+
T Consensus        48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~  127 (321)
T PF08424_consen   48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK  127 (321)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence            4567789999999999988877776666777788888899999999999999887665544443   2356788888888


Q ss_pred             hHhhccCCCC-------------cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhh
Q 029491           82 CSSTWSSCSS-------------FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL  127 (192)
Q Consensus        82 a~~~~p~~~~-------------~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~  127 (192)
                      +++.-.....             ....++.++++.+..+.| -.+.|++++...+.-..
T Consensus       128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG-~~E~Ava~~Qa~lE~n~  185 (321)
T PF08424_consen  128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAG-YTERAVALWQALLEFNF  185 (321)
T ss_pred             HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCC-chHHHHHHHHHHHHHHc
Confidence            7743222110             012346778999999999 99999999988887753

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.74  E-value=0.77  Score=39.55  Aligned_cols=89  Identities=11%  Similarity=-0.028  Sum_probs=76.8

Q ss_pred             CCChHHHHHHHHhhcCC--------CCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPY--------NQQED----------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHAL   62 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~--------~p~~~----------~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~l   62 (192)
                      .|++.+|.+.++.|+..        .|.++          -.+.+++-.+...|+|=++++.+-..|...|++.-|++..
T Consensus       191 ~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frR  270 (329)
T KOG0545|consen  191 LGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRR  270 (329)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            37788888887776642        46554          3567888899999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHhHhhccCC
Q 029491           63 CHVLQHDCCFKEAVQFMEECSSTWSSC   89 (192)
Q Consensus        63 ahvl~~~Gr~~eai~~~~~a~~~~p~~   89 (192)
                      |-++..-=+.+||.+-+..++++.|.-
T Consensus       271 akAhaa~Wn~~eA~~D~~~vL~ldpsl  297 (329)
T KOG0545|consen  271 AKAHAAVWNEAEAKADLQKVLELDPSL  297 (329)
T ss_pred             HHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence            999999999999999999999998773

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.65  E-value=0.5  Score=33.65  Aligned_cols=56  Identities=21%  Similarity=0.256  Sum_probs=36.3

Q ss_pred             HHcCCHHHHHHHHHHHhcccCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491           33 LELGQMSDAEEAAKKGLKINKHD---------CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS   88 (192)
Q Consensus        33 ~e~g~~~eAe~~~rrALaL~P~d---------a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~   88 (192)
                      ...|+|.+|.+...+.+......         ..+..++|-+....|++++|+..+++++++-..
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            46788888877777776654332         345566666666667777776666666655443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=92.43  E-value=3.3  Score=38.48  Aligned_cols=103  Identities=13%  Similarity=0.060  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhc---------------------------------------ccCCCHHHHHHHH
Q 029491           23 FIFGILAFSLLELGQMSDAEEAAKKGLK---------------------------------------INKHDCWSQHALC   63 (192)
Q Consensus        23 ~~~~~laf~L~e~g~~~eAe~~~rrALa---------------------------------------L~P~da~A~h~la   63 (192)
                      +.+..-||+|..++++.+|++.+-|...                                       -.|+.+|..--.|
T Consensus         7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~   86 (549)
T PF07079_consen    7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKA   86 (549)
T ss_pred             HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            4556667777777777777776554332                                       1299999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHhHhhccCCCC-cchhh---------hHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           64 HVLQHDCCFKEAVQFMEECSSTWSSCSS-FMYTH---------NWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        64 hvl~~~Gr~~eai~~~~~a~~~~p~~~~-~~~~h---------~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .+.+.++.+.+|+..+..+...-.+..+ .|...         .--|.|.++++.| +|+|+..+..+.+..-
T Consensus        87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g-~f~EgR~iLn~i~~~l  158 (549)
T PF07079_consen   87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETG-RFSEGRAILNRIIERL  158 (549)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHH
Confidence            9999999999999999888754222111 01111         1227899999999 9999999998887664

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=92.39  E-value=0.5  Score=45.02  Aligned_cols=90  Identities=16%  Similarity=0.168  Sum_probs=81.4

Q ss_pred             CCChHHHHHHHHhhcCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQED-FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM   79 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~-~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~   79 (192)
                      .|+...|..+.++|+-..|... .-..++|.++...|-.-.|-....++|+++-..|-.+..+|.++....+.+.|+..+
T Consensus       620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~  699 (886)
T KOG4507|consen  620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAF  699 (886)
T ss_pred             cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHH
Confidence            3788889999999999998655 345788999999998899999999999999999999999999999999999999999


Q ss_pred             HHhHhhccCCC
Q 029491           80 EECSSTWSSCS   90 (192)
Q Consensus        80 ~~a~~~~p~~~   90 (192)
                      ++|+...|.++
T Consensus       700 ~~a~~~~~~~~  710 (886)
T KOG4507|consen  700 RQALKLTTKCP  710 (886)
T ss_pred             HHHHhcCCCCh
Confidence            99999999975

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=91.90  E-value=0.35  Score=42.87  Aligned_cols=79  Identities=6%  Similarity=-0.104  Sum_probs=70.2

Q ss_pred             hhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHhHhhccCCCC
Q 029491           13 QVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-LCHVLQHDCCFKEAVQFMEECSSTWSSCSS   91 (192)
Q Consensus        13 ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~-lahvl~~~Gr~~eai~~~~~a~~~~p~~~~   91 (192)
                      |+.-..|+|+-.+.+++.--...|-|.+--..+-++|..+|+|+..|-. .+|-+..-++++.+.+.+.+.+|.+|+.|-
T Consensus        98 R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~  177 (435)
T COG5191          98 RSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR  177 (435)
T ss_pred             hhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch
Confidence            3444568999999999887778889999999999999999999998877 889999999999999999999999999764

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=91.65  E-value=1.2  Score=35.24  Aligned_cols=96  Identities=11%  Similarity=0.084  Sum_probs=72.8

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      ++++++...+...--+.|+.+.+...-|..+...|++++|....|+..+-.|+.+.+..-++.++..+|+++        
T Consensus        24 ~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~--------   95 (153)
T TIGR02561        24 ADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE--------   95 (153)
T ss_pred             CCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH--------
Confidence            345555555554444678888888889999999999999999999999999999999888888888877653        


Q ss_pred             hHhhccCCCCcchhhhHHH-HHHHHHhCCCCHHHHHHHHHHhh
Q 029491           82 CSSTWSSCSSFMYTHNWWH-VALCYLEGHSPMRKVLEIYDNHI  123 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~Wh-lAl~~l~~G~~~deAl~~yd~~i  123 (192)
                                       || .|...++.| .-.+++.+.+.-.
T Consensus        96 -----------------Wr~~A~~~le~~-~~~~a~~Lv~al~  120 (153)
T TIGR02561        96 -----------------WHVHADEVLARD-ADADAVALVRALL  120 (153)
T ss_pred             -----------------HHHHHHHHHHhC-CCHhHHHHHHHHh
Confidence                             22 344456766 5678887775544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=91.54  E-value=0.56  Score=40.35  Aligned_cols=66  Identities=14%  Similarity=0.108  Sum_probs=60.0

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQ   67 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~   67 (192)
                      ++.+.|+.+++|.+.++|++++-.--.|.++.+.|.+.-|.+-..+.++..|+++.+-....+...
T Consensus       195 ~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~~  260 (269)
T COG2912         195 LQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLLE  260 (269)
T ss_pred             hchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            467889999999999999999999999999999999999999999999999999988776666554

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=91.40  E-value=1.9  Score=42.63  Aligned_cols=54  Identities=13%  Similarity=0.288  Sum_probs=48.2

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH   54 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~   54 (192)
                      +|+.+++..+.+..-..-++|-..+..+-+++.+.|++++|..+++||+.-+|+
T Consensus        56 ~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   56 LGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS  109 (932)
T ss_pred             hcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence            588999997666555567788899999999999999999999999999999999

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=91.30  E-value=0.98  Score=33.85  Aligned_cols=64  Identities=11%  Similarity=0.264  Sum_probs=37.6

Q ss_pred             CCChHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHhcccCCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQ-----------MSDAEEAAKKGLKINKHDCWSQHALCH   64 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~---~~~~~laf~L~e~g~-----------~~eAe~~~rrALaL~P~da~A~h~lah   64 (192)
                      .|++..|+..++..+...+++.   ..|...|.++.+...           +-.+.+++.++..|.|+.+..++.+|.
T Consensus         9 rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~   86 (111)
T PF04781_consen    9 RGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELAS   86 (111)
T ss_pred             ccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHH
Confidence            3677777777777777665443   555555655543221           122667777777777776444444433

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=90.99  E-value=5.3  Score=34.82  Aligned_cols=111  Identities=11%  Similarity=-0.037  Sum_probs=80.8

Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491           10 IIHQVLPYNQQEDFIFGILAFSLLELG------------QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ   77 (192)
Q Consensus        10 ~~~ral~~~p~~~~~~~~laf~L~e~g------------~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~   77 (192)
                      .+.+.+..+|.|...+--+.--..+.-            -.+.-...+++||+.||++..-+-.+-.........++-..
T Consensus         7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~   86 (321)
T PF08424_consen    7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAK   86 (321)
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            466778888988766655543222221            24567788999999999999999999999999999999999


Q ss_pred             HHHHhHhhccCCCCcchhhhHHHHHHHH---HhCCCCHHHHHHHHHHhhhhh
Q 029491           78 FMEECSSTWSSCSSFMYTHNWWHVALCY---LEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        78 ~~~~a~~~~p~~~~~~~~h~~WhlAl~~---l~~G~~~deAl~~yd~~i~~~  126 (192)
                      -.++.+..+|.+..     .|..+=.+.   ...- .+++....|.+++..-
T Consensus        87 ~we~~l~~~~~~~~-----LW~~yL~~~q~~~~~f-~v~~~~~~y~~~l~~L  132 (321)
T PF08424_consen   87 KWEELLFKNPGSPE-----LWREYLDFRQSNFASF-TVSDVRDVYEKCLRAL  132 (321)
T ss_pred             HHHHHHHHCCCChH-----HHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHH
Confidence            99999999888543     443222211   1222 5889999999988773

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=90.58  E-value=1.9  Score=40.89  Aligned_cols=80  Identities=14%  Similarity=-0.101  Sum_probs=36.2

Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHhcccCCCHHHHHHH------HHHHHhcCCHHHHHHHHHH
Q 029491            9 DIIHQVLPYNQQEDFIFGILAFSLLELGQMSD-AEEAAKKGLKINKHDCWSQHAL------CHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         9 ~~~~ral~~~p~~~~~~~~laf~L~e~g~~~e-Ae~~~rrALaL~P~da~A~h~l------ahvl~~~Gr~~eai~~~~~   81 (192)
                      -....++..+|+++-+..+++.+++..|..-. +......+..+.|++.....-+      +..+...|+.+|+...+++
T Consensus        88 ~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~  167 (620)
T COG3914          88 LAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALER  167 (620)
T ss_pred             HHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            33444444444444444455444444442222 2333333444555554444444      4444444444554444444


Q ss_pred             hHhhccC
Q 029491           82 CSSTWSS   88 (192)
Q Consensus        82 a~~~~p~   88 (192)
                      +.+..|.
T Consensus       168 ~~d~~p~  174 (620)
T COG3914         168 AVDLLPK  174 (620)
T ss_pred             HHHhhhh
Confidence            4444444

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=90.39  E-value=2  Score=42.43  Aligned_cols=87  Identities=14%  Similarity=0.099  Sum_probs=71.4

Q ss_pred             CChHHHHHHHHhhcCCCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHH-----HHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQ---------EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW-----SQHALCHVLQ   67 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~---------~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~-----A~h~lahvl~   67 (192)
                      ++++++-+.+.++-...|.         .+.+....|.+....|++++|++.+++++..=|.+.+     +.-++|.+..
T Consensus       429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~  508 (894)
T COG2909         429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAH  508 (894)
T ss_pred             cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHH
Confidence            4677777777777665543         3567778888999999999999999999999888765     5667888999


Q ss_pred             hcCCHHHHHHHHHHhHhhccC
Q 029491           68 HDCCFKEAVQFMEECSSTWSS   88 (192)
Q Consensus        68 ~~Gr~~eai~~~~~a~~~~p~   88 (192)
                      -+|+.++|...+.++.+..-.
T Consensus       509 ~~G~~~~Al~~~~~a~~~a~~  529 (894)
T COG2909         509 IRGELTQALALMQQAEQMARQ  529 (894)
T ss_pred             HhchHHHHHHHHHHHHHHHHH
Confidence            999999999999999987433

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=90.31  E-value=2.5  Score=38.63  Aligned_cols=81  Identities=14%  Similarity=0.182  Sum_probs=63.1

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSL--LELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM   79 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L--~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~   79 (192)
                      |++++++.-++--+ -+|+ --.+|..|.-+  ...|..+.|...+++|-+..|+-+||.-+.-...+..|+.++|+...
T Consensus       134 G~~~~Ar~kfeAMl-~dPE-tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLv  211 (531)
T COG3898         134 GDYEDARKKFEAML-DDPE-TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLV  211 (531)
T ss_pred             CchHHHHHHHHHHh-cChH-HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHH
Confidence            66666666665322 2332 24456666655  45789999999999999999999999999999999999999999999


Q ss_pred             HHhHh
Q 029491           80 EECSS   84 (192)
Q Consensus        80 ~~a~~   84 (192)
                      ++...
T Consensus       212 d~~~~  216 (531)
T COG3898         212 DAQRA  216 (531)
T ss_pred             HHHHH
Confidence            87663

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=89.92  E-value=1.4  Score=39.33  Aligned_cols=61  Identities=11%  Similarity=0.117  Sum_probs=46.9

Q ss_pred             HHHHHHHhhcCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHH
Q 029491            6 LCFDIIHQVLPY--NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVL   66 (192)
Q Consensus         6 ~al~~~~ral~~--~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl   66 (192)
                      .++..++.....  -.++..+|+..|-.|...|+.+||.+.|+||++|.++.+...+-..+.=
T Consensus       347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~~  409 (415)
T COG4941         347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRLD  409 (415)
T ss_pred             hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence            345555544443  3467788999999999999999999999999999999988776665543

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=89.88  E-value=1.7  Score=38.73  Aligned_cols=94  Identities=13%  Similarity=0.039  Sum_probs=79.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhcccCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHH
Q 029491           27 ILAFSLLELGQMSDAEEAAKKGLKINKHDC----WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVA  102 (192)
Q Consensus        27 ~laf~L~e~g~~~eAe~~~rrALaL~P~da----~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlA  102 (192)
                      -.|.-+....+|..|+..|-.+|+-+-.|+    --+.|.|-+....|++..+|.-+.+++...|..     .-..|--|
T Consensus        86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h-----~Ka~~R~A  160 (390)
T KOG0551|consen   86 EEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH-----LKAYIRGA  160 (390)
T ss_pred             HHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch-----hhhhhhhh
Confidence            346667778899999999999999875554    567899999999999999999999999999884     23667799


Q ss_pred             HHHHhCCCCHHHHHHHHHHhhhhh
Q 029491          103 LCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus       103 l~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .+++++. ++++|+.+.+..+...
T Consensus       161 kc~~eLe-~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  161 KCLLELE-RFAEAVNWCEEGLQID  183 (390)
T ss_pred             HHHHHHH-HHHHHHHHHhhhhhhh
Confidence            9999998 8999999988776653

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=89.78  E-value=1  Score=26.75  Aligned_cols=29  Identities=17%  Similarity=0.167  Sum_probs=18.2

Q ss_pred             HHHHHHHHcCCHHHHHHH--HHHHhcccCCC
Q 029491           27 ILAFSLLELGQMSDAEEA--AKKGLKINKHD   55 (192)
Q Consensus        27 ~laf~L~e~g~~~eAe~~--~rrALaL~P~d   55 (192)
                      -+|..+...|++++|+..  ++-+..++|.|
T Consensus         6 ~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    6 GLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            346667777777777777  55676666654

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.44  E-value=2.6  Score=37.46  Aligned_cols=85  Identities=12%  Similarity=-0.019  Sum_probs=64.9

Q ss_pred             HHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCC
Q 029491           31 SLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHS  110 (192)
Q Consensus        31 ~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~  110 (192)
                      .|..-.+|+.|+++..--.+.+|.+--++..+||+++..-++.+|...|++.-.+.|...   ....+  .|..++..| 
T Consensus        19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~---qYrlY--~AQSLY~A~-   92 (459)
T KOG4340|consen   19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE---QYRLY--QAQSLYKAC-   92 (459)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH---HHHHH--HHHHHHHhc-
Confidence            356677888888888888888888888888888888888888888888888888887743   22233  566666777 


Q ss_pred             CHHHHHHHHHH
Q 029491          111 PMRKVLEIYDN  121 (192)
Q Consensus       111 ~~deAl~~yd~  121 (192)
                      .+..|++....
T Consensus        93 i~ADALrV~~~  103 (459)
T KOG4340|consen   93 IYADALRVAFL  103 (459)
T ss_pred             ccHHHHHHHHH
Confidence            78887776644

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=88.69  E-value=1.7  Score=27.06  Aligned_cols=40  Identities=20%  Similarity=0.188  Sum_probs=30.1

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHH
Q 029491           99 WHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLL  146 (192)
Q Consensus        99 WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~  146 (192)
                      .|+|-.|++.| +++.|..+.+..+...       .......|-+||=
T Consensus         3 LdLA~ayie~G-d~e~Ar~lL~evl~~~-------~~~q~~eA~~LL~   42 (44)
T TIGR03504         3 LDLARAYIEMG-DLEGARELLEEVIEEG-------DEAQRQEARALLA   42 (44)
T ss_pred             hHHHHHHHHcC-ChHHHHHHHHHHHHcC-------CHHHHHHHHHHHh
Confidence            36999999999 9999999999999542       1344556666653

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=88.64  E-value=4.1  Score=28.85  Aligned_cols=60  Identities=8%  Similarity=-0.038  Sum_probs=45.0

Q ss_pred             HhcCCHHHHHHHHHHhHhhccCCCCcc----hhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhh
Q 029491           67 QHDCCFKEAVQFMEECSSTWSSCSSFM----YTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL  127 (192)
Q Consensus        67 ~~~Gr~~eai~~~~~a~~~~p~~~~~~----~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~  127 (192)
                      ...|++.+|++.+.+..+.-.......    .....-++|..+...| ++++|+..++++|..-.
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G-~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFG-HYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHH
Confidence            467999999999988886655543210    1233456888899999 99999999999998853

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.33  E-value=4.6  Score=33.41  Aligned_cols=83  Identities=18%  Similarity=0.098  Sum_probs=65.5

Q ss_pred             CChHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHH---HHHHHHHHHhcCCHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS---QHALCHVLQHDCCFKEA   75 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~---~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A---~h~lahvl~~~Gr~~ea   75 (192)
                      |++++|......++..-.|.   +.+--.+|-++.+.|.+|+|.....    -.-++.|+   .+..|.++..+|+-++|
T Consensus       103 ~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~----t~~~~~w~~~~~elrGDill~kg~k~~A  178 (207)
T COG2976         103 NNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLD----TIKEESWAAIVAELRGDILLAKGDKQEA  178 (207)
T ss_pred             ccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHh----ccccccHHHHHHHHhhhHHHHcCchHHH
Confidence            67888888888888654443   4556678889999999999887643    34444444   58899999999999999


Q ss_pred             HHHHHHhHhhccC
Q 029491           76 VQFMEECSSTWSS   88 (192)
Q Consensus        76 i~~~~~a~~~~p~   88 (192)
                      ++.|++++...++
T Consensus       179 r~ay~kAl~~~~s  191 (207)
T COG2976         179 RAAYEKALESDAS  191 (207)
T ss_pred             HHHHHHHHHccCC
Confidence            9999999988754

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=88.26  E-value=7.7  Score=36.94  Aligned_cols=113  Identities=13%  Similarity=0.042  Sum_probs=81.6

Q ss_pred             HHhhcCCCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-hHhhcc
Q 029491           11 IHQVLPYNQQEDFIFGIL--AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE-CSSTWS   87 (192)
Q Consensus        11 ~~ral~~~p~~~~~~~~l--af~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~-a~~~~p   87 (192)
                      ...-++.+|.++.++.+.  +..+...+....+.-..+.++..||+++-++.+++.+++..|....++.-+.+ +...-|
T Consensus        54 ~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~  133 (620)
T COG3914          54 LLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSP  133 (620)
T ss_pred             HHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc
Confidence            333445678888776554  66667788888899999999999999999999999999999888777666555 888877


Q ss_pred             CCCCcchhhh--HHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           88 SCSSFMYTHN--WWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        88 ~~~~~~~~h~--~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      ++..+ ..|.  ...++-..-.+| +.+++.....+.+..
T Consensus       134 ~~~~~-~~~~~~~~~~~~~~~~l~-~~~~~~~~l~~~~d~  171 (620)
T COG3914         134 DNAEF-LGHLIRFYQLGRYLKLLG-RTAEAELALERAVDL  171 (620)
T ss_pred             chHHH-HhhHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHh
Confidence            75432 2331  111355555666 777777776666655

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=88.19  E-value=4.7  Score=36.67  Aligned_cols=102  Identities=11%  Similarity=-0.056  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC--CCCcchh
Q 029491           23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC-----WSQHALCHVLQHDCCFKEAVQFMEECSSTWSS--CSSFMYT   95 (192)
Q Consensus        23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da-----~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~--~~~~~~~   95 (192)
                      .++-+++-+.+..-++.+++.....-+++-..++     .++-.++.++.-.|.++.+++.+++|++.--.  ++. +..
T Consensus        84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~-LEl  162 (518)
T KOG1941|consen   84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAM-LEL  162 (518)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCce-eee
Confidence            4455666666666677777777777777765554     67788888888888888888888888864322  222 233


Q ss_pred             hhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           96 HNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        96 h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .+.--++-.+-.+. |+++++-.-.++....
T Consensus       163 qvcv~Lgslf~~l~-D~~Kal~f~~kA~~lv  192 (518)
T KOG1941|consen  163 QVCVSLGSLFAQLK-DYEKALFFPCKAAELV  192 (518)
T ss_pred             ehhhhHHHHHHHHH-hhhHHhhhhHhHHHHH
Confidence            34434666666666 7888887766666653

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.29  E-value=8.7  Score=34.67  Aligned_cols=114  Identities=9%  Similarity=-0.032  Sum_probs=79.7

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-cCCC---HHHHHHHHHHHHhcCCHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI-NKHD---CWSQHALCHVLQHDCCFKEAVQ   77 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL-~P~d---a~A~h~lahvl~~~Gr~~eai~   77 (192)
                      |.+.+|-..-.+.|...|.|-.+...--.++--+|+.+.-....++.+-- ||+-   .+.+--.+-.+++.|-.++|..
T Consensus       117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk  196 (491)
T KOG2610|consen  117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEK  196 (491)
T ss_pred             ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHH
Confidence            56666666677777778877655544444666788888888888888877 7776   6777788888888888888888


Q ss_pred             HHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHH
Q 029491           78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDN  121 (192)
Q Consensus        78 ~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~  121 (192)
                      ..+++++++|.+.   ++|-  -.|..+-..| ++.|+.+...+
T Consensus       197 ~A~ralqiN~~D~---Wa~H--a~aHVlem~~-r~Keg~eFM~~  234 (491)
T KOG2610|consen  197 QADRALQINRFDC---WASH--AKAHVLEMNG-RHKEGKEFMYK  234 (491)
T ss_pred             HHHhhccCCCcch---HHHH--HHHHHHHhcc-hhhhHHHHHHh
Confidence            8888888887742   2221  1333333345 88888876533

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=86.46  E-value=6.8  Score=35.75  Aligned_cols=97  Identities=16%  Similarity=0.122  Sum_probs=79.5

Q ss_pred             HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCH----HHHHHH
Q 029491            5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ--MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF----KEAVQF   78 (192)
Q Consensus         5 ~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~--~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~----~eai~~   78 (192)
                      ++-+..+..++..+|++-.++.....+|..++.  +..=.+.+.++|.+||.|-.++|-.=.|..+.-+.    .+=+++
T Consensus        92 d~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~f  171 (421)
T KOG0529|consen   92 DEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEF  171 (421)
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHH
Confidence            456777888999999999999999999998884  57788899999999999999999999999888876    677889


Q ss_pred             HHHhHhhccCCCCcchhhhHHHHHHHHHh
Q 029491           79 MEECSSTWSSCSSFMYTHNWWHVALCYLE  107 (192)
Q Consensus        79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~  107 (192)
                      .++.+..++.+     .| .||.=...+.
T Consensus       172 tt~~I~~nfSN-----Ys-aWhyRs~lL~  194 (421)
T KOG0529|consen  172 TTKLINDNFSN-----YS-AWHYRSLLLS  194 (421)
T ss_pred             HHHHHhccchh-----hh-HHHHHHHHHH
Confidence            99999886663     23 4555444454

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=86.38  E-value=8.2  Score=34.66  Aligned_cols=119  Identities=13%  Similarity=0.036  Sum_probs=74.6

Q ss_pred             hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc--------------------------CCHHHHHHHHHHHhccc-----
Q 029491            4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL--------------------------GQMSDAEEAAKKGLKIN-----   52 (192)
Q Consensus         4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e~--------------------------g~~~eAe~~~rrALaL~-----   52 (192)
                      .+|+++.-+-.+.+-|+.|.++|.++..+...                          +-.+++.....||+..+     
T Consensus       212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPY  291 (415)
T COG4941         212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPY  291 (415)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChH
Confidence            35667766666667888888888887765441                          22455666777777665     


Q ss_pred             ----------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhH
Q 029491           53 ----------------------------------KHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNW   98 (192)
Q Consensus        53 ----------------------------------P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~   98 (192)
                                                        -.+|-.--|.+.++.|.-=++.|++..+..... |...++...|. 
T Consensus       292 qlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~-~~L~gy~~~h~-  369 (415)
T COG4941         292 QLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAMVEALLAR-PRLDGYHLYHA-  369 (415)
T ss_pred             HHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhcc-cccccccccHH-
Confidence                                              222333345556666666666777666654432 33333212222 


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           99 WHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        99 WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                       -.|-.+..+| +.+||-+.||++|...
T Consensus       370 -~RadlL~rLg-r~~eAr~aydrAi~La  395 (415)
T COG4941         370 -ARADLLARLG-RVEEARAAYDRAIALA  395 (415)
T ss_pred             -HHHHHHHHhC-ChHHHHHHHHHHHHhc
Confidence             2566677888 9999999999999884

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=86.06  E-value=15  Score=36.69  Aligned_cols=105  Identities=10%  Similarity=-0.086  Sum_probs=77.9

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCC
Q 029491           20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH---------DCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS   90 (192)
Q Consensus        20 ~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~---------da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~   90 (192)
                      .+|..--..++.+.-.+++++|+....++-.--|.         -+....-.|-|...+|+++++++..+.++..=|...
T Consensus       413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~  492 (894)
T COG2909         413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA  492 (894)
T ss_pred             hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence            45677778899999999999999998887665444         234555678899999999999999999997766643


Q ss_pred             CcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           91 SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        91 ~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      .+...-..--++.++.-.| ++++|+.+....-..
T Consensus       493 ~~~r~~~~sv~~~a~~~~G-~~~~Al~~~~~a~~~  526 (894)
T COG2909         493 YRSRIVALSVLGEAAHIRG-ELTQALALMQQAEQM  526 (894)
T ss_pred             chhhhhhhhhhhHHHHHhc-hHHHHHHHHHHHHHH
Confidence            3222222334777777788 899999877655443

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.85  E-value=20  Score=33.83  Aligned_cols=124  Identities=10%  Similarity=-0.022  Sum_probs=89.2

Q ss_pred             CCChHHHHHHHHhhcC---CCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc-CCCHHHH--HHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLP---YNQQ-------EDFIFGILAFSLLELGQMSDAEEAAKKGLKIN-KHDCWSQ--HALCHVLQ   67 (192)
Q Consensus         1 ~G~~~~al~~~~ral~---~~p~-------~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~-P~da~A~--h~lahvl~   67 (192)
                      +|+..+++..+..+..   ..|.       .+..|..+|.-..-.|.|+.||..+..|+.+- ..|-||.  .++|-++.
T Consensus       336 ~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL  415 (629)
T KOG2300|consen  336 RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYL  415 (629)
T ss_pred             hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHH
Confidence            4777777777666554   3454       46788888888889999999999999999864 4566664  57889999


Q ss_pred             hcCCHHHHHHHHHHhHhhccCCCC--cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           68 HDCCFKEAVQFMEECSSTWSSCSS--FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        68 ~~Gr~~eai~~~~~a~~~~p~~~~--~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      .+|+-+.--..++..-+.+....+  .+.+-+..-.|++.+..+ ++.||.....+.+.-
T Consensus       416 ~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn-~lnEaK~~l~e~Lkm  474 (629)
T KOG2300|consen  416 RIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQN-DLNEAKRFLRETLKM  474 (629)
T ss_pred             HhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhh
Confidence            999888777766665544322111  111224445788888888 899999988887765

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=85.39  E-value=9.4  Score=37.02  Aligned_cols=86  Identities=15%  Similarity=0.208  Sum_probs=59.4

Q ss_pred             HHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh----------------------------
Q 029491           33 LELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSS----------------------------   84 (192)
Q Consensus        33 ~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~----------------------------   84 (192)
                      .+.|-.+=+...+||=|.++|..   .-.---.+...+|.+|+..-++..+.                            
T Consensus       149 ~~~~lPets~rvyrRYLk~~P~~---~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~  225 (835)
T KOG2047|consen  149 ESHGLPETSIRVYRRYLKVAPEA---REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPD  225 (835)
T ss_pred             HhCCChHHHHHHHHHHHhcCHHH---HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcc
Confidence            45555566777777777777765   33444556667777777666665542                            


Q ss_pred             ----------------hccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           85 ----------------TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        85 ----------------~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                                      ..++.    .++.|--||-+|+..| ++|.|..+|+.+|..-
T Consensus       226 ~~~slnvdaiiR~gi~rftDq----~g~Lw~SLAdYYIr~g-~~ekarDvyeeai~~v  278 (835)
T KOG2047|consen  226 KVQSLNVDAIIRGGIRRFTDQ----LGFLWCSLADYYIRSG-LFEKARDVYEEAIQTV  278 (835)
T ss_pred             hhcccCHHHHHHhhcccCcHH----HHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHhh
Confidence                            22221    2345556999999999 9999999999999984

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=85.23  E-value=2  Score=35.67  Aligned_cols=62  Identities=11%  Similarity=-0.013  Sum_probs=36.0

Q ss_pred             HHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh
Q 029491            7 CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH   68 (192)
Q Consensus         7 al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~   68 (192)
                      |+..+.+|....|+.+..++.+|......|+.=+|.=.+-|++...--.+-|.-++...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            34556666666666666666666666666666666666666665554446666666666655

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=84.40  E-value=19  Score=36.18  Aligned_cols=61  Identities=16%  Similarity=0.165  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH---------------------hcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491           23 FIFGILAFSLLELGQMSDAEEAAKKG---------------------LKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus        23 ~~~~~laf~L~e~g~~~eAe~~~rrA---------------------LaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      ..+.--|--++-.|++|.|...|..|                     |+-...|--|..-+|.-++-.|++.+|+.||.+
T Consensus       913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr  992 (1416)
T KOG3617|consen  913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR  992 (1416)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            33333444577888888888877654                     455578889999999999999999999999998


Q ss_pred             hH
Q 029491           82 CS   83 (192)
Q Consensus        82 a~   83 (192)
                      |.
T Consensus       993 Aq  994 (1416)
T KOG3617|consen  993 AQ  994 (1416)
T ss_pred             HH
Confidence            76

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=84.08  E-value=5.3  Score=37.40  Aligned_cols=62  Identities=15%  Similarity=0.140  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 029491           22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKH--DCWSQHALCHVLQHDCCFKEAVQFMEECS   83 (192)
Q Consensus        22 ~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~--da~A~h~lahvl~~~Gr~~eai~~~~~a~   83 (192)
                      .++..-+|..+.+.|+.+||+++++.-+..+|.  +-..+-+|..++...++.+|+-+.+.+--
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd  322 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD  322 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence            567777889999999999999999999998887  45688899999999999999999998854

The molecular function of this protein is uncertain.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=83.86  E-value=5.3  Score=31.28  Aligned_cols=67  Identities=16%  Similarity=0.083  Sum_probs=52.3

Q ss_pred             CHHHHHHHHHHHHhcC---CHHHHHHHHHHhHh-hccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           55 DCWSQHALCHVLQHDC---CFKEAVQFMEECSS-TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        55 da~A~h~lahvl~~~G---r~~eai~~~~~a~~-~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ......+++|++...-   +..+||..++..++ ..|...  ..+-++  +|+.|..+| +|+++++..+..+..+
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~r--Re~lyY--LAvg~yRlk-eY~~s~~yvd~ll~~e  101 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERR--RECLYY--LAVGHYRLK-EYSKSLRYVDALLETE  101 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccc--hhhhhh--hHHHHHHHh-hHHHHHHHHHHHHhhC
Confidence            4567889999998765   46789999999997 444432  133334  999999999 9999999999999885

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=83.56  E-value=4.4  Score=32.34  Aligned_cols=51  Identities=16%  Similarity=0.037  Sum_probs=43.2

Q ss_pred             CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491           37 QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS   88 (192)
Q Consensus        37 ~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~   88 (192)
                      ..+..++.+++.+.-.| ++.....++-++..+|+.+||..+++++..+.|.
T Consensus       126 ~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~  176 (193)
T PF11846_consen  126 MLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA  176 (193)
T ss_pred             HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence            34456677888888888 6888899999999999999999999999999985

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=83.45  E-value=4.8  Score=32.12  Aligned_cols=46  Identities=7%  Similarity=-0.047  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhh
Q 029491           72 FKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW  124 (192)
Q Consensus        72 ~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~  124 (192)
                      .++-+++.++.++.+|+. .     ..-.++.++...| +.++|..+..+...
T Consensus       127 l~~~~~~a~~~l~~~P~~-~-----~~~~~a~~l~~~G-~~~eA~~~~~~~~~  172 (193)
T PF11846_consen  127 LEAYIEWAERLLRRRPDP-N-----VYQRYALALALLG-DPEEARQWLARARR  172 (193)
T ss_pred             HHHHHHHHHHHHHhCCCH-H-----HHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence            445566667777777662 2     1223566666666 77777777666543

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PF12854 PPR_1: PPR repeat

Probab=82.77  E-value=3.1  Score=23.98  Aligned_cols=26  Identities=15%  Similarity=0.143  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491           56 CWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus        56 a~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      ...+..+-+.+...|+.++|++.+++
T Consensus         7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    7 VVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            44566666666666666666666654

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=82.65  E-value=32  Score=30.68  Aligned_cols=106  Identities=10%  Similarity=0.082  Sum_probs=81.2

Q ss_pred             cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----cc------------------------CCCHHHHHHHHHH
Q 029491           15 LPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK-----IN------------------------KHDCWSQHALCHV   65 (192)
Q Consensus        15 l~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALa-----L~------------------------P~da~A~h~lahv   65 (192)
                      +..+|-....+-.++-++..+|+++.|.+..+|||=     +.                        ...--+.+...+.
T Consensus        33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~  112 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS  112 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence            445677888889999999999999999999999862     11                        1223577888899


Q ss_pred             HHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhh
Q 029491           66 LQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW  124 (192)
Q Consensus        66 l~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~  124 (192)
                      +.++|.+.-|+++..=-+.++|...+   .+.-.++=.+.+..+ +|+--+..++....
T Consensus       113 L~~RG~~rTAlE~~KlLlsLdp~~DP---~g~ll~ID~~ALrs~-~y~~Li~~~~~~~~  167 (360)
T PF04910_consen  113 LGRRGCWRTALEWCKLLLSLDPDEDP---LGVLLFIDYYALRSR-QYQWLIDFSESPLA  167 (360)
T ss_pred             HHhcCcHHHHHHHHHHHHhcCCCCCc---chhHHHHHHHHHhcC-CHHHHHHHHHhHhh
Confidence            99999999999999999999999433   123333555556777 89988888886554

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=82.63  E-value=5.2  Score=35.25  Aligned_cols=61  Identities=18%  Similarity=0.181  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 029491           23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECS   83 (192)
Q Consensus        23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~   83 (192)
                      -.++..+-.+.++|.+.+|..+.+|++.++|-+-....-+-.++...|+-=+++..|++-.
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            3456667788899999999999999999999999999999999999999777777776544

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=82.45  E-value=9.6  Score=34.78  Aligned_cols=85  Identities=14%  Similarity=0.127  Sum_probs=68.8

Q ss_pred             HHHHHHHHhhcCCCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCH
Q 029491            5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLE------------LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF   72 (192)
Q Consensus         5 ~~al~~~~ral~~~p~~~~~~~~laf~L~e------------~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~   72 (192)
                      .+++....+.+..+|+...+++..=-+..+            +..+++=...-..+|..||++-+++|-+.+++...+..
T Consensus        46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~  125 (421)
T KOG0529|consen   46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS  125 (421)
T ss_pred             hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence            456777778888899998888776554433            22455666778899999999999999999999988876


Q ss_pred             --HHHHHHHHHhHhhccCC
Q 029491           73 --KEAVQFMEECSSTWSSC   89 (192)
Q Consensus        73 --~eai~~~~~a~~~~p~~   89 (192)
                        ..=+..++++++.+|++
T Consensus       126 ~~~~EL~lcek~L~~D~RN  144 (421)
T KOG0529|consen  126 DWNTELQLCEKALKQDPRN  144 (421)
T ss_pred             hHHHHHHHHHHHHhcCccc
Confidence              67789999999999884

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=81.97  E-value=8.9  Score=33.25  Aligned_cols=85  Identities=13%  Similarity=0.117  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHH
Q 029491           24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL  103 (192)
Q Consensus        24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl  103 (192)
                      ++.-++-.+..+|+++.+++...+-+.++|.|-.++-.+=-++...|+...+|..|++.........+            
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg------------  222 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG------------  222 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC------------
Confidence            33445556667899999999999999999999999999999999999999999999988765322111            


Q ss_pred             HHHhCCCCHHHHHHHHHHhhhh
Q 029491          104 CYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus       104 ~~l~~G~~~deAl~~yd~~i~~  125 (192)
                          -. .-.++..+|.+.+..
T Consensus       223 ----i~-P~~~~~~~y~~~~~~  239 (280)
T COG3629         223 ----ID-PAPELRALYEEILRQ  239 (280)
T ss_pred             ----CC-ccHHHHHHHHHHhcc
Confidence                12 346777788777555

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.12  E-value=16  Score=31.40  Aligned_cols=94  Identities=14%  Similarity=0.149  Sum_probs=64.3

Q ss_pred             HHHcCCHHHHHHHHHHHhcccCCCHHH------HHHHHHHHHhc-CCHHHHHHHHHHhHhhccCCCCc-chhhhHHHHHH
Q 029491           32 LLELGQMSDAEEAAKKGLKINKHDCWS------QHALCHVLQHD-CCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVAL  103 (192)
Q Consensus        32 L~e~g~~~eAe~~~rrALaL~P~da~A------~h~lahvl~~~-Gr~~eai~~~~~a~~~~p~~~~~-~~~h~~WhlAl  103 (192)
                      ....++..+|..+.++|+++--+-..-      +..+|.+++.. -+++.+|..|+++-+-.....+. ...-..--.|.
T Consensus        83 cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~  162 (288)
T KOG1586|consen   83 CYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ  162 (288)
T ss_pred             HhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH
Confidence            334557788888888888876443332      33778888876 89999999999998766553221 01112233555


Q ss_pred             HHHhCCCCHHHHHHHHHHhhhhh
Q 029491          104 CYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus       104 ~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +--.+| +|.+|+.+|++....+
T Consensus       163 yaa~le-qY~~Ai~iyeqva~~s  184 (288)
T KOG1586|consen  163 YAAQLE-QYSKAIDIYEQVARSS  184 (288)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHh
Confidence            555677 8999999999988765

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=81.10  E-value=37  Score=35.86  Aligned_cols=91  Identities=8%  Similarity=-0.056  Sum_probs=46.0

Q ss_pred             HHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCC
Q 029491           31 SLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHS  110 (192)
Q Consensus        31 ~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~  110 (192)
                      .|...+.+++|.+.+++-+.--.+-.-.|.-.+..+..+.+.++|-..+.+|+.--|...   +..+---.|..-+..| 
T Consensus      1539 iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e---Hv~~IskfAqLEFk~G- 1614 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE---HVEFISKFAQLEFKYG- 1614 (1710)
T ss_pred             HHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh---hHHHHHHHHHHHhhcC-
Confidence            344445555555555555555555555555555555555555555555555555544411   0111112344444555 


Q ss_pred             CHHHHHHHHHHhhhh
Q 029491          111 PMRKVLEIYDNHIWK  125 (192)
Q Consensus       111 ~~deAl~~yd~~i~~  125 (192)
                      +-+++..+|+..+..
T Consensus      1615 DaeRGRtlfEgll~a 1629 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSA 1629 (1710)
T ss_pred             CchhhHHHHHHHHhh
Confidence            556666666665554

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=80.99  E-value=3.1  Score=25.08  Aligned_cols=28  Identities=29%  Similarity=0.357  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 029491           24 IFGILAFSLLELGQMSDAEEAAKKGLKI   51 (192)
Q Consensus        24 ~~~~laf~L~e~g~~~eAe~~~rrALaL   51 (192)
                      ++..+|-+-.++++|++|..-++++|.+
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3444555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=80.63  E-value=35  Score=30.42  Aligned_cols=97  Identities=15%  Similarity=0.035  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC-CHHHHHH-HHHHHHhcCCHHHHHHHHHHhHhhcc-----CCCCcchh
Q 029491           23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKH-DCWSQHA-LCHVLQHDCCFKEAVQFMEECSSTWS-----SCSSFMYT   95 (192)
Q Consensus        23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~-da~A~h~-lahvl~~~Gr~~eai~~~~~a~~~~p-----~~~~~~~~   95 (192)
                      -++..+.-.|.+.|.+.-|.+.++--+.|||. ||-+.-- +=+.-.+.++++-=+.++++......     ..|+    
T Consensus       104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn----  179 (360)
T PF04910_consen  104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN----  179 (360)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc----
Confidence            44556666899999999999999999999999 9976554 44555667778778888888765211     1233    


Q ss_pred             hhHHHHHHHHHhCCCCH---------------HHHHHHHHHhhhh
Q 029491           96 HNWWHVALCYLEGHSPM---------------RKVLEIYDNHIWK  125 (192)
Q Consensus        96 h~~WhlAl~~l~~G~~~---------------deAl~~yd~~i~~  125 (192)
                       ...-.||+++.++ +-               ++|-....++|..
T Consensus       180 -~a~S~aLA~~~l~-~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~  222 (360)
T PF04910_consen  180 -FAFSIALAYFRLE-KEESSQSSAQSGRSENSESADEALQKAILR  222 (360)
T ss_pred             -HHHHHHHHHHHhc-CccccccccccccccchhHHHHHHHHHHHH
Confidence             2334777777777 55               6777776666654

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	192
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-05

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 11/82 (13%), Positives = 26/82 (31%)

Query: 1   MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
             R      ++ Q      +   I   L  +L + GQ   A  A  +  ++   + +   
Sbjct: 70  QQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITA 129

Query: 61  ALCHVLQHDCCFKEAVQFMEEC 82
            L +  +  C ++       + 
Sbjct: 130 QLLNWRRRLCDWRALDVLSAQV 151

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	192
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.76
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.74
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.74
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.71
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.71
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.69
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.68
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.68
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.67
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.63
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.62
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.62
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.61
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.59
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.59
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.58
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.58
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.57
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.57
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.56
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.56
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.55
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.55
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.55
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.55
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.54
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.54
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.53
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.53
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.53
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.53
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.53
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.53
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.53
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.53
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.52
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.51
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.51
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.51
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.51
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.51
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.5
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.5
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.5
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.5
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.5
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.5
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.49
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.49
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.49
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.49
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.49
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.48
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.48
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.48
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.48
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.48
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.48
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.48
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.48
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.47
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.47
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.46
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.46
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.46
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.46
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.46
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.46
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.45
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.45
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.45
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.44
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.44
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.44
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.44
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.43
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.43
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.42
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.41
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.41
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.41
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.4
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.4
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.4
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.4
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.39
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.39
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.39
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.39
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.38
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.38
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.37
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.37
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.37
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.37
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.37
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.37
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.37
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.37
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.36
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.36
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.36
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.35
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.35
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.35
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.34
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.34
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.34
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.33
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.33
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.33
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.33
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.32
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.32
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.32
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.32
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.31
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.31
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.31
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.31
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.3
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.29
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.28
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.28
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.28
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.28
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.25
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.25
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.24
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.24
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.23
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.23
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.22
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.21
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.21
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.2
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.2
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.19
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.19
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.19
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.19
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.18
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.17
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.16
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.15
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.14
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.13
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.13
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.13
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.13
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.13
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.12
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.12
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.12
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.12
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.11
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.1
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.1
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.09
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.08
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.08
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.08
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.05
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.05
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.03
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.01
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.01
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.0
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.99
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.98
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.98
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.98
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.98
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.96
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.95
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.95
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.95
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.95
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.93
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.93
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.9
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.87
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.87
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.84
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.82
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.79
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.78
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.76
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.65
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.64
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.63
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.61
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.58
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.55
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.55
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.48
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.47
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.4
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.4
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.36
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.35
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.34
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.28
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.25
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.2
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.08
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.08
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.03
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.01
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.93
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.85
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.85
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.84
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.81
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.64
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.56
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.53
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.37
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.16
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.99
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.83
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.57
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.42
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.28
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.2
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.06
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.97
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	94.92
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.47
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	94.46
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.2
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	93.31
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	92.83
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	92.81
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	92.54
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	92.49
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	91.4
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	89.71
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	89.4
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	86.88
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	86.22
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	83.37
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	82.24

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.76  E-value=8.4e-18  Score=129.78  Aligned_cols=111  Identities=13%  Similarity=0.035  Sum_probs=104.5

Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCC
Q 029491           10 IIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC   89 (192)
Q Consensus        10 ~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~   89 (192)
                      .+++++..+|+++.++..+|.++.+.|++++|+..+++++.++|+++.++.++|.++..+|++++|+..+++++.+.|++
T Consensus        24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~  103 (151)
T 3gyz_A           24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND  103 (151)
T ss_dssp             CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred             CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           90 SSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        90 ~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +   .  .+.++|.+++.+| ++++|+..|++++...
T Consensus       104 ~---~--~~~~lg~~~~~lg-~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          104 Y---T--PVFHTGQCQLRLK-APLKAKECFELVIQHS  134 (151)
T ss_dssp             C---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred             c---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence            5   3  4456999999999 9999999999999984

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.74  E-value=5.3e-17  Score=153.39  Aligned_cols=156  Identities=16%  Similarity=0.163  Sum_probs=131.4

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      +|++++|+..+++|+.++|+++.++.++|.++.+.|++++|++.+++||+++|+++.++.++|.++..+|++++|+..++
T Consensus        22 ~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~  101 (723)
T 4gyw_A           22 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYT  101 (723)
T ss_dssp             TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcCcccchhch
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR  160 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g~~~~~~~r  160 (192)
                      ++++++|++.   .+++  ++|.++..+| ++++|++.|++++...  |.   ....+.+-+.++   ...|......+.
T Consensus       102 kAl~l~P~~~---~a~~--~Lg~~~~~~g-~~~eAi~~~~~Al~l~--P~---~~~a~~~L~~~l---~~~g~~~~A~~~  167 (723)
T 4gyw_A          102 RAIQINPAFA---DAHS--NLASIHKDSG-NIPEAIASYRTALKLK--PD---FPDAYCNLAHCL---QIVCDWTDYDER  167 (723)
T ss_dssp             HHHHHCTTCH---HHHH--HHHHHHHHTT-CHHHHHHHHHHHHHHC--SC---CHHHHHHHHHHH---HHTTCCTTHHHH
T ss_pred             HHHHhCCCCH---HHHH--HHHHHHHHcC-CHHHHHHHHHHHHHhC--CC---ChHHHhhhhhHH---HhcccHHHHHHH
Confidence            9999999853   4444  5999999999 9999999999999885  42   233344444444   444444334566


Q ss_pred             HHHHHHHHhh
Q 029491          161 LKVLADCVAD  170 (192)
Q Consensus       161 w~~l~~~~~~  170 (192)
                      ++.+.....+
T Consensus       168 ~~kal~l~~~  177 (723)
T 4gyw_A          168 MKKLVSIVAD  177 (723)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHhChh
Confidence            6666666555

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.74  E-value=9.8e-17  Score=128.27  Aligned_cols=120  Identities=17%  Similarity=0.098  Sum_probs=110.9

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhc-----------
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHD-----------   69 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~-----------   69 (192)
                      .|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++++|+++.++.++|.++..+           
T Consensus        18 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~   97 (217)
T 2pl2_A           18 LGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGK   97 (217)
T ss_dssp             TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccc
Confidence            489999999999999999999999999999999999999999999999999999999999999999999           


Q ss_pred             CCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           70 CCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        70 Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      |++++|+..+++++++.|+++   .  .+..+|.++...| ++++|+..|++++...
T Consensus        98 g~~~~A~~~~~~al~~~P~~~---~--~~~~lg~~~~~~g-~~~~A~~~~~~al~~~  148 (217)
T 2pl2_A           98 GYLEQALSVLKDAERVNPRYA---P--LHLQRGLVYALLG-ERDKAEASLKQALALE  148 (217)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHHhCcccH---H--HHHHHHHHHHHcC-ChHHHHHHHHHHHhcc
Confidence            999999999999999999853   3  4446999999998 8999999999999873

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.71  E-value=1.1e-16  Score=121.70  Aligned_cols=112  Identities=13%  Similarity=-0.044  Sum_probs=105.2

Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491            9 DIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS   88 (192)
Q Consensus         9 ~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~   88 (192)
                      ..+++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..+++++.+.|+
T Consensus         8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   87 (148)
T 2vgx_A            8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX   87 (148)
T ss_dssp             CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           89 CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        89 ~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ++.     .++++|.+++..| ++++|+..|++++...
T Consensus        88 ~~~-----~~~~lg~~~~~~g-~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A           88 EPR-----FPFHAAECLLQXG-ELAEAESGLFLAQELI  119 (148)
T ss_dssp             CTH-----HHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             Cch-----HHHHHHHHHHHcC-CHHHHHHHHHHHHHHC
Confidence            653     4456999999999 9999999999999875

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.71  E-value=1.5e-16  Score=127.15  Aligned_cols=119  Identities=12%  Similarity=0.010  Sum_probs=111.7

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhc
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL-----------GQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHD   69 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~-----------g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~   69 (192)
                      .|++++|+..+++++..+|+++.++.++|.++...           |++++|+..+++|++++|+++.++..+|.++..+
T Consensus        52 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~  131 (217)
T 2pl2_A           52 LGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL  131 (217)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence            58999999999999999999999999999999999           9999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           70 CCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        70 Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      |++++|+..+++++++. +++   .  .+.++|.++...| ++++|+..|++.+...
T Consensus       132 g~~~~A~~~~~~al~~~-~~~---~--~~~~la~~~~~~g-~~~~A~~~~~~al~~~  181 (217)
T 2pl2_A          132 GERDKAEASLKQALALE-DTP---E--IRSALAELYLSMG-RLDEALAQYAKALEQA  181 (217)
T ss_dssp             TCHHHHHHHHHHHHHHC-CCH---H--HHHHHHHHHHHHT-CHHHHHHHHHHHHHHS
T ss_pred             CChHHHHHHHHHHHhcc-cch---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence            99999999999999998 532   3  4556999999999 9999999999999874

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.69  E-value=5.2e-16  Score=115.84  Aligned_cols=112  Identities=13%  Similarity=0.000  Sum_probs=102.3

Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491            9 DIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS   88 (192)
Q Consensus         9 ~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~   88 (192)
                      ..+++++..+|+++..+..+|..+...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..+++++.+.|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           89 CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        89 ~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ++.     .++++|.+++..| ++++|+..|++.+...
T Consensus        85 ~~~-----~~~~lg~~~~~~g-~~~~A~~~~~~al~~~  116 (142)
T 2xcb_A           85 EPR-----FPFHAAECHLQLG-DLDGAESGFYSARALA  116 (142)
T ss_dssp             CTH-----HHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             CcH-----HHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence            653     4567999999999 9999999999999875

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.68  E-value=1.8e-16  Score=120.34  Aligned_cols=119  Identities=8%  Similarity=-0.064  Sum_probs=109.1

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |+.++++..++++++..|+++..+..+|.++.+.|+|++|++.++++|+++|+++.++..+|.++..+|++++|+..+++
T Consensus        11 ~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~   90 (150)
T 4ga2_A           11 ADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRR   90 (150)
T ss_dssp             HHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHH-HHHhhhhh
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEI-YDNHIWKE  126 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~-yd~~i~~~  126 (192)
                      ++++.|+++   .  .+..+|.+++..| +++++... +++++...
T Consensus        91 al~~~p~~~---~--~~~~la~~~~~~~-~~~~aa~~~~~~al~l~  130 (150)
T 4ga2_A           91 SVELNPTQK---D--LVLKIAELLCKND-VTDGRAKYWVERAAKLF  130 (150)
T ss_dssp             HHHHCTTCH---H--HHHHHHHHHHHHC-SSSSHHHHHHHHHHHHS
T ss_pred             HHHhCCCCH---H--HHHHHHHHHHHcC-ChHHHHHHHHHHHHHhC
Confidence            999999864   3  4445999999998 88887766 48888874

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.68  E-value=6.6e-16  Score=114.48  Aligned_cols=110  Identities=12%  Similarity=0.067  Sum_probs=99.1

Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCC
Q 029491           11 IHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS   90 (192)
Q Consensus        11 ~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~   90 (192)
                      ..|+..++|+.+..+...|..+...|+|++|+..+++||+++|+++.++.++|.++..+|++++|+..+++++.++|++.
T Consensus         2 ~ar~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   81 (126)
T 4gco_A            2 NARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI   81 (126)
T ss_dssp             -----CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hhHHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh
Confidence            35677899999999999999999999999999999999999999999999999999999999999999999999998853


Q ss_pred             CcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           91 SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        91 ~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                         .  .+.++|.++..+| ++++|+..|++++...
T Consensus        82 ---~--a~~~lg~~~~~~~-~~~~A~~~~~~al~l~  111 (126)
T 4gco_A           82 ---K--GYIRKAACLVAMR-EWSKAQRAYEDALQVD  111 (126)
T ss_dssp             ---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred             ---H--HHHHHHHHHHHCC-CHHHHHHHHHHHHHHC
Confidence               3  4456999999999 9999999999999885

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.67  E-value=6.2e-16  Score=135.77  Aligned_cols=136  Identities=10%  Similarity=0.094  Sum_probs=120.7

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ-MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM   79 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~-~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~   79 (192)
                      .|++++|+..+++++.++|+++.++.++|.++...|+ +++|++.+++||+++|+++.+++++|.++..+|++++|+..+
T Consensus       110 ~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~  189 (382)
T 2h6f_A          110 DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFI  189 (382)
T ss_dssp             TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred             CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHH
Confidence            4889999999999999999999999999999999997 999999999999999999999999999999999999999999


Q ss_pred             HHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHH
Q 029491           80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLR  147 (192)
Q Consensus        80 ~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~R  147 (192)
                      ++++.++|++     .+.|.++|.++..+| ++++|+..|+++|...  |.   ..........++.+
T Consensus       190 ~kal~ldP~~-----~~a~~~lg~~~~~~g-~~~eAl~~~~~al~l~--P~---~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          190 ADILNQDAKN-----YHAWQHRQWVIQEFK-LWDNELQYVDQLLKED--VR---NNSVWNQRYFVISN  246 (382)
T ss_dssp             HHHHHHCTTC-----HHHHHHHHHHHHHHT-CCTTHHHHHHHHHHHC--TT---CHHHHHHHHHHHHH
T ss_pred             HHHHHhCccC-----HHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhC--CC---CHHHHHHHHHHHHH
Confidence            9999999984     356778999999999 9999999999999985  42   23344455555444

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.63  E-value=1.3e-15  Score=143.91  Aligned_cols=120  Identities=10%  Similarity=0.049  Sum_probs=112.9

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      +|++++|+..+++++.++|+++.++.++|.++.+.|++++|++.+++||+++|+++.++.++|.++..+|++++|+..++
T Consensus        56 ~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~  135 (723)
T 4gyw_A           56 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR  135 (723)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++++.|+++   .  .+.++|.++...| ++++|.+.|++.+...
T Consensus       136 ~Al~l~P~~~---~--a~~~L~~~l~~~g-~~~~A~~~~~kal~l~  175 (723)
T 4gyw_A          136 TALKLKPDFP---D--AYCNLAHCLQIVC-DWTDYDERMKKLVSIV  175 (723)
T ss_dssp             HHHHHCSCCH---H--HHHHHHHHHHHTT-CCTTHHHHHHHHHHHH
T ss_pred             HHHHhCCCCh---H--HHhhhhhHHHhcc-cHHHHHHHHHHHHHhC
Confidence            9999999853   3  4456999999999 9999999999988763

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.62  E-value=2.1e-15  Score=119.69  Aligned_cols=122  Identities=13%  Similarity=0.036  Sum_probs=106.0

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGI----------------LAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCH   64 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~----------------laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lah   64 (192)
                      .|++++|+..+++++..+|+++.++..                +|.++...|++++|+..++++++++|+++.++.++|.
T Consensus        17 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   96 (208)
T 3urz_A           17 AGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAE   96 (208)
T ss_dssp             TTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            489999999999999999999999999                9999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHhHhhccCCCCcchhhh---------------------------------HHHHHHHHHhCCCC
Q 029491           65 VLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN---------------------------------WWHVALCYLEGHSP  111 (192)
Q Consensus        65 vl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~---------------------------------~WhlAl~~l~~G~~  111 (192)
                      ++..+|++++|+..+++++.+.|+++.   +++                                 +++.|++++..| +
T Consensus        97 ~~~~~g~~~~A~~~~~~al~~~P~~~~---a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~-~  172 (208)
T 3urz_A           97 MQVCRGQEKDALRMYEKILQLEADNLA---ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTT-R  172 (208)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHH-T
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHcc-C
Confidence            999999999999999999999998642   221                                 123445555566 6


Q ss_pred             HHHHHHHHHHhhhhh
Q 029491          112 MRKVLEIYDNHIWKE  126 (192)
Q Consensus       112 ~deAl~~yd~~i~~~  126 (192)
                      |++|+..|++++...
T Consensus       173 ~~~A~~~~~~al~l~  187 (208)
T 3urz_A          173 YEKARNSLQKVILRF  187 (208)
T ss_dssp             HHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHhC
Confidence            888888888888764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.62  E-value=3.6e-14  Score=108.54  Aligned_cols=120  Identities=16%  Similarity=0.108  Sum_probs=109.8

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...+++++++..++
T Consensus        18 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   97 (184)
T 3vtx_A           18 KGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQ   97 (184)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++...|.+.   .  .+..+|.++...| ++++|+..|++.+...
T Consensus        98 ~a~~~~~~~~---~--~~~~lg~~~~~~g-~~~~A~~~~~~~l~~~  137 (184)
T 3vtx_A           98 RAIALNTVYA---D--AYYKLGLVYDSMG-EHDKAIEAYEKTISIK  137 (184)
T ss_dssp             HHHHHCTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred             HHHHhCccch---H--HHHHHHHHHHHhC-CchhHHHHHHHHHHhc
Confidence            9999988853   2  4456899999998 8999999999999874

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.61  E-value=1.6e-14  Score=110.54  Aligned_cols=120  Identities=13%  Similarity=0.143  Sum_probs=113.0

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      +|++++++..+.+++...|+++.++..+|..+...+++++|...+.+++.++|+++.++..+|.++..+|++++|+..++
T Consensus        52 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  131 (184)
T 3vtx_A           52 IGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE  131 (184)
T ss_dssp             TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++...|.++   .  .+.++|.++..+| ++++|+..|++++...
T Consensus       132 ~~l~~~p~~~---~--~~~~lg~~~~~~g-~~~~A~~~~~~al~~~  171 (184)
T 3vtx_A          132 KTISIKPGFI---R--AYQSIGLAYEGKG-LRDEAVKYFKKALEKE  171 (184)
T ss_dssp             HHHHHCTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHTT
T ss_pred             HHHHhcchhh---h--HHHHHHHHHHHCC-CHHHHHHHHHHHHhCC
Confidence            9999999853   3  4456999999999 9999999999999874

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.59  E-value=3.3e-14  Score=112.51  Aligned_cols=125  Identities=10%  Similarity=0.024  Sum_probs=113.2

Q ss_pred             CCChHHHHHHHHhhcCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQ-QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM   79 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p-~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~   79 (192)
                      .|++++|+..+++++..+| .++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..+
T Consensus        20 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~   99 (228)
T 4i17_A           20 AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATL   99 (228)
T ss_dssp             TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHH
Confidence            4899999999999999998 899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHhhccCCCCcc--hhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           80 EECSSTWSSCSSFM--YTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        80 ~~a~~~~p~~~~~~--~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ++++...|+++.+.  ....+.++|.++...| ++++|+..|++++...
T Consensus       100 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~  147 (228)
T 4i17_A          100 TEGIKAVPGNATIEKLYAIYYLKEGQKFQQAG-NIEKAEENYKHATDVT  147 (228)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTSS
T ss_pred             HHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhc-cHHHHHHHHHHHHhcC
Confidence            99999999864210  0124567999999999 9999999999999873

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.59  E-value=7.8e-15  Score=113.04  Aligned_cols=89  Identities=12%  Similarity=-0.072  Sum_probs=86.8

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+++++..+|+++.++.++|.++...|+|++|++.+++|++++|+++.++.++|.++..+|++++|+..++
T Consensus        49 ~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~  128 (151)
T 3gyz_A           49 KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFE  128 (151)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCC
Q 029491           81 ECSSTWSSC   89 (192)
Q Consensus        81 ~a~~~~p~~   89 (192)
                      +++.+.|+.
T Consensus       129 ~al~l~~~~  137 (151)
T 3gyz_A          129 LVIQHSNDE  137 (151)
T ss_dssp             HHHHHCCCH
T ss_pred             HHHHhCCCH
Confidence            999998873

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.58  E-value=3e-14  Score=105.90  Aligned_cols=121  Identities=8%  Similarity=0.003  Sum_probs=109.3

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++.+|+..+++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus        26 ~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  105 (166)
T 1a17_A           26 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE  105 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      +++...|.++   ..+.....+..++..| ++++|+..|++....
T Consensus       106 ~a~~~~p~~~---~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~  146 (166)
T 1a17_A          106 TVVKVKPHDK---DAKMKYQECNKIVKQK-AFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHHHSTTCH---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCH---HHHHHHHHHHHHHHHH-HHHHHHHcccchHHH
Confidence            9999998853   3444445666678888 999999999876554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.58  E-value=1.5e-14  Score=107.04  Aligned_cols=90  Identities=10%  Similarity=0.051  Sum_probs=87.8

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+++++..+|+++.++.++|.++...|++++|+..+++||+++|+++.++..+|.++..+|++++|+..++
T Consensus        26 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~  105 (126)
T 4gco_A           26 KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYE  105 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCC
Q 029491           81 ECSSTWSSCS   90 (192)
Q Consensus        81 ~a~~~~p~~~   90 (192)
                      ++++++|+++
T Consensus       106 ~al~l~P~~~  115 (126)
T 4gco_A          106 DALQVDPSNE  115 (126)
T ss_dssp             HHHHHCTTCH
T ss_pred             HHHHHCcCCH
Confidence            9999999964

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.57  E-value=3.5e-14  Score=108.40  Aligned_cols=119  Identities=12%  Similarity=0.081  Sum_probs=108.5

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHH-HHhcCCH--HHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHV-LQHDCCF--KEAVQF   78 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahv-l~~~Gr~--~eai~~   78 (192)
                      |++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.+ +...|++  ++|+..
T Consensus        24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~  103 (177)
T 2e2e_A           24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAM  103 (177)
T ss_dssp             ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            6788899999999999999999999999999999999999999999999999999999999999 7799998  999999


Q ss_pred             HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++++...|.++   .  .+..+|.+++..| ++++|+..|++.+...
T Consensus       104 ~~~al~~~p~~~---~--~~~~la~~~~~~g-~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A          104 IDKALALDSNEI---T--ALMLLASDAFMQA-NYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHCTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhCCCcH---H--HHHHHHHHHHHcc-cHHHHHHHHHHHHhhC
Confidence            999999998853   2  4556999999999 9999999999999874

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.57  E-value=1.2e-14  Score=127.48  Aligned_cols=121  Identities=8%  Similarity=-0.001  Sum_probs=110.4

Q ss_pred             CCC-hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 029491            1 MGR-PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM   79 (192)
Q Consensus         1 ~G~-~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~   79 (192)
                      +|+ +++|+..+++++.++|+++.++..+|.++...|++++|+..+++||+++|+++.++.++|.++..+|++++|+..+
T Consensus       144 ~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~  223 (382)
T 2h6f_A          144 LQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYV  223 (382)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHH
Confidence            476 9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHH-----HHHHHHhhhhh
Q 029491           80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKV-----LEIYDNHIWKE  126 (192)
Q Consensus        80 ~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deA-----l~~yd~~i~~~  126 (192)
                      +++++++|+++     ..|.++|.++..+++.+++|     +..|+++|...
T Consensus       224 ~~al~l~P~~~-----~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~  270 (382)
T 2h6f_A          224 DQLLKEDVRNN-----SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV  270 (382)
T ss_dssp             HHHHHHCTTCH-----HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHhCCCCH-----HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC
Confidence            99999999954     25557999998844365788     58999999874

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.56  E-value=2.2e-13  Score=110.22  Aligned_cols=123  Identities=11%  Similarity=0.042  Sum_probs=111.4

Q ss_pred             CCChHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---HHHHHHHHHHHHh------
Q 029491            1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQH------   68 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~---~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---a~A~h~lahvl~~------   68 (192)
                      .|++++|+..+++++...|++   +.++..+|.++...|++++|+..+++++.++|++   +.++..+|.++..      
T Consensus        28 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~  107 (261)
T 3qky_A           28 QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYE  107 (261)
T ss_dssp             TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTT
T ss_pred             hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccc
Confidence            489999999999999999999   8899999999999999999999999999998865   6789999999999      


Q ss_pred             --cCCHHHHHHHHHHhHhhccCCCCcchhhhH--------------HHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           69 --DCCFKEAVQFMEECSSTWSSCSSFMYTHNW--------------WHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        69 --~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~--------------WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                        +|++++|+..+++++...|+++.  .....              +.+|.+++..| ++++|+..|++.+...
T Consensus       108 ~~~~~~~~A~~~~~~~l~~~p~~~~--~~~a~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~  178 (261)
T 3qky_A          108 LDQTDTRKAIEAFQLFIDRYPNHEL--VDDATQKIRELRAKLARKQYEAARLYERRE-LYEAAAVTYEAVFDAY  178 (261)
T ss_dssp             SCCHHHHHHHHHHHHHHHHCTTCTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred             ccchhHHHHHHHHHHHHHHCcCchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHC
Confidence              99999999999999999999753  22222              67999999999 9999999999999874

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.56  E-value=9.8e-14  Score=98.10  Aligned_cols=119  Identities=13%  Similarity=0.230  Sum_probs=110.4

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |++++|+..+++++...|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..+++
T Consensus        15 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~   94 (136)
T 2fo7_A           15 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK   94 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ++...|..+   .  .+..+|.++...| ++++|...|++.+...
T Consensus        95 ~~~~~~~~~---~--~~~~la~~~~~~~-~~~~A~~~~~~~~~~~  133 (136)
T 2fo7_A           95 ALELDPRSA---E--AWYNLGNAYYKQG-DYDEAIEYYQKALELD  133 (136)
T ss_dssp             HHHHCTTCH---H--HHHHHHHHHHTTT-CHHHHHHHHHHHHHHS
T ss_pred             HHHhCCCCh---H--HHHHHHHHHHHHc-cHHHHHHHHHHHHccC
Confidence            999988743   2  4556999999998 9999999999988763

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.55  E-value=5e-13  Score=99.75  Aligned_cols=119  Identities=9%  Similarity=0.049  Sum_probs=111.1

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |++++++..+++++...|+++.++..+|.++...|++++|...+++++.++|+++.++..+|.++...|++++|+..+++
T Consensus        22 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  101 (186)
T 3as5_A           22 GRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIK  101 (186)
T ss_dssp             TCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ++...|..+   .  .+..+|.++...| ++++|+..|++.+...
T Consensus       102 ~~~~~~~~~---~--~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~  140 (186)
T 3as5_A          102 VAEANPINF---N--VRFRLGVALDNLG-RFDEAIDSFKIALGLR  140 (186)
T ss_dssp             HHHHCTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred             HHhcCcHhH---H--HHHHHHHHHHHcC-cHHHHHHHHHHHHhcC
Confidence            999988743   2  4456999999998 9999999999999874

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.55  E-value=5.2e-13  Score=103.11  Aligned_cols=122  Identities=9%  Similarity=0.025  Sum_probs=105.3

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhc-CCHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHD-CCFKEAVQFM   79 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~-Gr~~eai~~~   79 (192)
                      .|++++|+..+++++..+|+++.++..+|.++...|++++|.+.+++++.++|+++.++..+|.++... |++++|+..+
T Consensus        21 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~  100 (225)
T 2vq2_A           21 GQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYF  100 (225)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            488899999999999999999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             HHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        80 ~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ++++. .|..+.  ....+..+|.++...| ++++|+..|++.+...
T Consensus       101 ~~~~~-~~~~~~--~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~  143 (225)
T 2vq2_A          101 DKALA-DPTYPT--PYIANLNKGICSAKQG-QFGLAEAYLKRSLAAQ  143 (225)
T ss_dssp             HHHHT-STTCSC--HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHS
T ss_pred             HHHHc-CcCCcc--hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence            99998 444332  2345566888888988 8999999999988764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.55  E-value=1.4e-13  Score=116.60  Aligned_cols=119  Identities=13%  Similarity=0.109  Sum_probs=95.5

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+++++..+|+++.++..+|.++...|++++|++.++++++++|+++.++.++|.++..+|++++|+..++
T Consensus       216 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  295 (388)
T 1w3b_A          216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN  295 (388)
T ss_dssp             TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            37778888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      +++...|.++   .  .+..+|.++...| ++++|+..|++++..
T Consensus       296 ~al~~~p~~~---~--~~~~l~~~~~~~g-~~~~A~~~~~~al~~  334 (388)
T 1w3b_A          296 TALRLCPTHA---D--SLNNLANIKREQG-NIEEAVRLYRKALEV  334 (388)
T ss_dssp             HHHHHCTTCH---H--HHHHHHHHHHTTT-CHHHHHHHHHHHTTS
T ss_pred             HHHhhCcccH---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHhc
Confidence            8888877642   2  3445788877887 788888888887765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.55  E-value=1.5e-13  Score=102.69  Aligned_cols=120  Identities=13%  Similarity=0.074  Sum_probs=112.3

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus        55 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  134 (186)
T 3as5_A           55 TGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFK  134 (186)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++...|..+     ..+..+|.++...| ++++|+..|++.+...
T Consensus       135 ~~~~~~~~~~-----~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~  174 (186)
T 3as5_A          135 IALGLRPNEG-----KVHRAIAFSYEQMG-RHEEALPHFKKANELD  174 (186)
T ss_dssp             HHHHHCTTCH-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             HHHhcCccch-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHcC
Confidence            9999988742     35556999999999 9999999999998875

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.54  E-value=6.7e-14  Score=107.69  Aligned_cols=118  Identities=14%  Similarity=-0.007  Sum_probs=71.1

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHH-hcCCHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQ-HDCCFKEAVQFM   79 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~-~~Gr~~eai~~~   79 (192)
                      .|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++++| ++.....++.+.. .+++..+++..+
T Consensus        19 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~   97 (176)
T 2r5s_A           19 QGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRL   97 (176)
T ss_dssp             TTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHH
Confidence            37778888888888888888888888888888888888877776666666665 5544444443322 122233345555


Q ss_pred             HHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        80 ~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      ++++...|+++   ..  +..+|.++...| ++++|+..|++.+..
T Consensus        98 ~~al~~~P~~~---~~--~~~la~~~~~~g-~~~~A~~~~~~~l~~  137 (176)
T 2r5s_A           98 EQELAANPDNF---EL--ACELAVQYNQVG-RDEEALELLWNILKV  137 (176)
T ss_dssp             HHHHHHSTTCH---HH--HHHHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCCCH---HH--HHHHHHHHHHcc-cHHHHHHHHHHHHHh
Confidence            55555555532   22  223555555555 555555555555543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.54  E-value=1e-13  Score=100.34  Aligned_cols=102  Identities=13%  Similarity=0.022  Sum_probs=93.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhH
Q 029491           19 QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNW   98 (192)
Q Consensus        19 p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~   98 (192)
                      |..+..+...|..+...|++++|+..+++++.++|+++.++.++|.++..+|++++|+..+++++.+.|+++   .  .+
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~--~~   75 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV---R--AY   75 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---H--HH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH---H--HH
Confidence            456778889999999999999999999999999999999999999999999999999999999999998853   3  45


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           99 WHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        99 WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ..+|.++..+| ++++|+..|++.+...
T Consensus        76 ~~lg~~~~~~~-~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           76 IRKATAQIAVK-EYASALETLDAARTKD  102 (126)
T ss_dssp             HHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-CHHHHHHHHHHHHHhC
Confidence            56999999999 9999999999998874

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.53  E-value=6e-14  Score=111.00  Aligned_cols=120  Identities=7%  Similarity=0.026  Sum_probs=110.5

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH-------HHHHHHHHHHHhcCCHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC-------WSQHALCHVLQHDCCFK   73 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da-------~A~h~lahvl~~~Gr~~   73 (192)
                      +|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++++|+++       .++..+|.++..+|+++
T Consensus        55 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~  134 (228)
T 4i17_A           55 IKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIE  134 (228)
T ss_dssp             TTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHH
Confidence            58999999999999999999999999999999999999999999999999999999       77999999999999999


Q ss_pred             HHHHHHHHhHhhccC--CCCcchhhhHHHHHHHHHhCCCCH---------------------------HHHHHHHHHhhh
Q 029491           74 EAVQFMEECSSTWSS--CSSFMYTHNWWHVALCYLEGHSPM---------------------------RKVLEIYDNHIW  124 (192)
Q Consensus        74 eai~~~~~a~~~~p~--~~~~~~~h~~WhlAl~~l~~G~~~---------------------------deAl~~yd~~i~  124 (192)
                      +|+..++++++..|+  .+     ..+.++|.+++..| +.                           ++|+..|++++.
T Consensus       135 ~A~~~~~~al~~~p~~~~~-----~~~~~l~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  208 (228)
T 4i17_A          135 KAEENYKHATDVTSKKWKT-----DALYSLGVLFYNNG-ADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVT  208 (228)
T ss_dssp             HHHHHHHHHTTSSCHHHHH-----HHHHHHHHHHHHHH-HHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCcccH-----HHHHHHHHHHHHHH-HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999887  43     24456999998888 77                           899999999998


Q ss_pred             hh
Q 029491          125 KE  126 (192)
Q Consensus       125 ~~  126 (192)
                      ..
T Consensus       209 l~  210 (228)
T 4i17_A          209 LS  210 (228)
T ss_dssp             HC
T ss_pred             cC
Confidence            74

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.53  E-value=8.9e-14  Score=102.70  Aligned_cols=106  Identities=9%  Similarity=0.068  Sum_probs=93.9

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCc--chhhh
Q 029491           20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSF--MYTHN   97 (192)
Q Consensus        20 ~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~--~~~h~   97 (192)
                      +.+.++..+|.++...|+|++|+..+++||+++|+++.++.++|.++..+|++++|+..+++++.+.|..+..  ..+..
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~   85 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA   85 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence            4567888999999999999999999999999999999999999999999999999999999999999886431  11234


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           98 WWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        98 ~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +..+|.++...| ++++|+..|++++...
T Consensus        86 ~~~lg~~~~~~~-~~~~A~~~~~kal~~~  113 (127)
T 4gcn_A           86 MSRAGNAFQKQN-DLSLAVQWFHRSLSEF  113 (127)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcC-CHHHHHHHHHHHHhhC
Confidence            556999999999 9999999999999863

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.53  E-value=1.4e-14  Score=134.99  Aligned_cols=119  Identities=12%  Similarity=-0.049  Sum_probs=112.1

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      +|++++|+..+++++..+|+++.++.++|.++...|++++|++.+++|++++|+++.++.++|.++..+|++++ +..|+
T Consensus       446 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~  524 (681)
T 2pzi_A          446 LGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQ  524 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHH
T ss_pred             cCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHH
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ++++++|++.   .  .+.++|.+++.+| ++++|++.|++++...
T Consensus       525 ~al~~~P~~~---~--a~~~lg~~~~~~g-~~~~A~~~~~~al~l~  564 (681)
T 2pzi_A          525 TVWSTNDGVI---S--AAFGLARARSAEG-DRVGAVRTLDEVPPTS  564 (681)
T ss_dssp             HHHHHCTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHTSCTTS
T ss_pred             HHHHhCCchH---H--HHHHHHHHHHHcC-CHHHHHHHHHhhcccC
Confidence            9999999853   3  4456999999999 9999999999999774

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.53  E-value=2.4e-13  Score=115.17  Aligned_cols=120  Identities=12%  Similarity=0.044  Sum_probs=101.9

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|+.++|+..+++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++.++|.++..+|++++|+..++
T Consensus       182 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  261 (388)
T 1w3b_A          182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR  261 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            47888888889998888888888888888888889999999999999999999988888999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ++++..|+.+   .  .+..+|.++...| ++++|+..|++++...
T Consensus       262 ~al~~~p~~~---~--~~~~l~~~~~~~g-~~~~A~~~~~~al~~~  301 (388)
T 1w3b_A          262 RAIELQPHFP---D--AYCNLANALKEKG-SVAEAEDCYNTALRLC  301 (388)
T ss_dssp             HHHHTCSSCH---H--HHHHHHHHHHHHS-CHHHHHHHHHHHHHHC
T ss_pred             HHHhhCCCCH---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHhhC
Confidence            9888888753   2  3445888888888 8899999988888763

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.53  E-value=2.9e-14  Score=104.64  Aligned_cols=96  Identities=10%  Similarity=-0.075  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHH
Q 029491           24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL  103 (192)
Q Consensus        24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl  103 (192)
                      .+..+|..+.+.|++++|+..++++++++|+++.++..+|.++..+|++++|+..+++++.+.|+++   .  .+..+|.
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---~--~~~~la~   93 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI---A--VHAALAV   93 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---H--HHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---H--HHHHHHH
Confidence            3567788899999999999999999999999999999999999999999999999999999999853   3  4456999


Q ss_pred             HHHhCCCCHHHHHHHHHHhhhh
Q 029491          104 CYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus       104 ~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      ++...| ++++|+..|++.+..
T Consensus        94 ~~~~~g-~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           94 SHTNEH-NANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHC-
T ss_pred             HHHHcC-CHHHHHHHHHHHHHh
Confidence            999998 899999999998764

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.53  E-value=4.9e-14  Score=118.31  Aligned_cols=120  Identities=11%  Similarity=0.042  Sum_probs=112.3

Q ss_pred             CCChHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQ--EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQF   78 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~--~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~   78 (192)
                      .|++++|+..+++++...|+  ++.++..+|.++...|++++|+..++++++++|+++.++..+|.++..+|++++|+..
T Consensus       190 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  269 (365)
T 4eqf_A          190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEA  269 (365)
T ss_dssp             CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            46789999999999999999  9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++++...|+.+   .  .+.++|.++...| ++++|+..|++++...
T Consensus       270 ~~~al~~~p~~~---~--~~~~l~~~~~~~g-~~~~A~~~~~~al~~~  311 (365)
T 4eqf_A          270 YTRALEIQPGFI---R--SRYNLGISCINLG-AYREAVSNFLTALSLQ  311 (365)
T ss_dssp             HHHHHHHCTTCH---H--HHHHHHHHHHHHT-CCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCch---H--HHHHHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence            999999998853   2  4556999999999 9999999999999875

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.53  E-value=1.7e-13  Score=123.54  Aligned_cols=118  Identities=13%  Similarity=0.042  Sum_probs=60.6

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |+.++|+..+++++..+|+++.++..+|.++...|++++|++.+++|++++|+++.++..+|.++..+|++++|+..+++
T Consensus         3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   82 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ   82 (568)
T ss_dssp             ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            45566666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      ++...|++.   .  .+..+|.++...| ++++|++.|++++..
T Consensus        83 al~~~p~~~---~--~~~~la~~~~~~g-~~~~A~~~~~~al~~  120 (568)
T 2vsy_A           83 ASDAAPEHP---G--IALWLGHALEDAG-QAEAAAAAYTRAHQL  120 (568)
T ss_dssp             HHHHCTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCH---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence            666655532   2  2233666666665 566666666666555

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.53  E-value=3.7e-13  Score=104.74  Aligned_cols=122  Identities=13%  Similarity=0.068  Sum_probs=108.5

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+++++  . .++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus        19 ~~~~~~A~~~~~~a~--~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~   95 (213)
T 1hh8_A           19 KKDWKGALDAFSAVQ--D-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLK   95 (213)
T ss_dssp             TTCHHHHHHHHHTSS--S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHc--C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHH
Confidence            489999999999997  3 3788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCc-----------chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSF-----------MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~-----------~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++...|.++..           -....+.++|.++...| ++++|+..|++++...
T Consensus        96 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           96 EALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE-EWKKAEEQLALATSMK  151 (213)
T ss_dssp             HHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTC
T ss_pred             HHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHcc-CHHHHHHHHHHHHHcC
Confidence            999988875400           01235567999999999 9999999999999874

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.52  E-value=8e-14  Score=105.69  Aligned_cols=91  Identities=11%  Similarity=0.021  Sum_probs=88.1

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+++++..+|+++.++..+|.++...|++++|++.+++|++++|+++.++.++|.++..+|++++|+..++
T Consensus        34 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  113 (148)
T 2vgx_A           34 SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF  113 (148)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCC
Q 029491           81 ECSSTWSSCSS   91 (192)
Q Consensus        81 ~a~~~~p~~~~   91 (192)
                      +++.+.|+++.
T Consensus       114 ~al~~~p~~~~  124 (148)
T 2vgx_A          114 LAQELIANXPE  124 (148)
T ss_dssp             HHHHHHTTCGG
T ss_pred             HHHHHCcCCCc
Confidence            99999998653

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.51  E-value=7.1e-14  Score=105.89  Aligned_cols=104  Identities=9%  Similarity=0.031  Sum_probs=91.9

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH-HH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ-FM   79 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~-~~   79 (192)
                      +|++++|+..+++++..+|+++.++.++|.++...|++++|+..++++++++|+++.++..+|.++..+|+.++++. ++
T Consensus        44 ~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~  123 (150)
T 4ga2_A           44 AKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWV  123 (150)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999988776 56


Q ss_pred             HHhHhhccCCCCcchhhhHHHHHHHHHhCC
Q 029491           80 EECSSTWSSCSSFMYTHNWWHVALCYLEGH  109 (192)
Q Consensus        80 ~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G  109 (192)
                      ++++++.|+++.   ...  -.+..+...|
T Consensus       124 ~~al~l~P~~~~---~~~--l~~~ll~~~G  148 (150)
T 4ga2_A          124 ERAAKLFPGSPA---VYK--LKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHSTTCHH---HHH--HHHHHHHTCC
T ss_pred             HHHHHhCcCCHH---HHH--HHHHHHHHhC
Confidence            999999999642   222  2555555555

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.51  E-value=9.6e-14  Score=103.43  Aligned_cols=90  Identities=11%  Similarity=-0.019  Sum_probs=87.7

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++|+.++|+++.++..+|.++..+|++++|+..++
T Consensus        31 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  110 (142)
T 2xcb_A           31 AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFY  110 (142)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCC
Q 029491           81 ECSSTWSSCS   90 (192)
Q Consensus        81 ~a~~~~p~~~   90 (192)
                      +++.+.|+++
T Consensus       111 ~al~~~p~~~  120 (142)
T 2xcb_A          111 SARALAAAQP  120 (142)
T ss_dssp             HHHHHHHTCG
T ss_pred             HHHHhCCCCc
Confidence            9999999865

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.51  E-value=2.7e-13  Score=102.77  Aligned_cols=101  Identities=13%  Similarity=0.048  Sum_probs=52.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhH
Q 029491           19 QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNW   98 (192)
Q Consensus        19 p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~   98 (192)
                      +.++..+..+|..+...|+|++|+..+++++.++|+++.++.++|.++..+|++++|+..+++++.+.|.+.   .  .+
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~--~~   82 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYS---K--AW   82 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---H--HH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---H--HH
Confidence            334455555555555555555555555555555555555555555555555555555555555555554431   1  23


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           99 WHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        99 WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      ..+|.++..+| ++++|+..|++.+..
T Consensus        83 ~~lg~~~~~~g-~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           83 SRLGLARFDMA-DYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcc-CHHHHHHHHHHHHHh
Confidence            33555555555 555555555555443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.51  E-value=4.2e-13  Score=112.56  Aligned_cols=124  Identities=7%  Similarity=0.069  Sum_probs=105.6

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++++|+++.++..+|.++..+|++++|+..+++
T Consensus        79 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  158 (365)
T 4eqf_A           79 GDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKN  158 (365)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhccCCCCcc-----------------------------------------hhhhHHHHHHHHHhCCCCHHHHHHHHH
Q 029491           82 CSSTWSSCSSFM-----------------------------------------YTHNWWHVALCYLEGHSPMRKVLEIYD  120 (192)
Q Consensus        82 a~~~~p~~~~~~-----------------------------------------~~h~~WhlAl~~l~~G~~~deAl~~yd  120 (192)
                      ++...|..+...                                         ....+..+|.++...| ++++|+..|+
T Consensus       159 al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~  237 (365)
T 4eqf_A          159 WIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG-EFNRAIDAFN  237 (365)
T ss_dssp             HHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT-CHHHHHHHHH
T ss_pred             HHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence            998877632210                                         1223445777777777 7888888887


Q ss_pred             Hhhhhh
Q 029491          121 NHIWKE  126 (192)
Q Consensus       121 ~~i~~~  126 (192)
                      +.+...
T Consensus       238 ~al~~~  243 (365)
T 4eqf_A          238 AALTVR  243 (365)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            777663

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.51  E-value=8.3e-13  Score=100.03  Aligned_cols=91  Identities=15%  Similarity=0.034  Sum_probs=88.4

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+++++..+|+++.++.++|.++...|++++|+..++++++++|+++.++..+|.++..+|++++|+..++
T Consensus        24 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  103 (164)
T 3sz7_A           24 RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYE  103 (164)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCC
Q 029491           81 ECSSTWSSCSS   91 (192)
Q Consensus        81 ~a~~~~p~~~~   91 (192)
                      +++.+.|+++.
T Consensus       104 ~al~~~p~~~~  114 (164)
T 3sz7_A          104 KGIEAEGNGGS  114 (164)
T ss_dssp             HHHHHHSSSCC
T ss_pred             HHHHhCCCchH
Confidence            99999999753

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.50  E-value=1.5e-12  Score=108.36  Aligned_cols=125  Identities=9%  Similarity=0.048  Sum_probs=111.5

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++.+|+..+++++..+|+++.++..+|.++...|++++|++.++++++++|+++.++..+|.++..+|++++|+..++
T Consensus        77 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  156 (368)
T 1fch_A           77 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR  156 (368)
T ss_dssp             TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcc----------------------------------------------hhhhHHHHHHHHHhCCCCHHH
Q 029491           81 ECSSTWSSCSSFM----------------------------------------------YTHNWWHVALCYLEGHSPMRK  114 (192)
Q Consensus        81 ~a~~~~p~~~~~~----------------------------------------------~~h~~WhlAl~~l~~G~~~de  114 (192)
                      +++...|..+...                                              ....+..+|.++...| ++++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g-~~~~  235 (368)
T 1fch_A          157 DWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG-EYDK  235 (368)
T ss_dssp             HHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT-CHHH
T ss_pred             HHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC-CHHH
Confidence            9998887754321                                              1234456888889998 8999


Q ss_pred             HHHHHHHhhhhh
Q 029491          115 VLEIYDNHIWKE  126 (192)
Q Consensus       115 Al~~yd~~i~~~  126 (192)
                      |+..|++.+...
T Consensus       236 A~~~~~~al~~~  247 (368)
T 1fch_A          236 AVDCFTAALSVR  247 (368)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC
Confidence            999999988764

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.50  E-value=3.1e-13  Score=121.78  Aligned_cols=120  Identities=8%  Similarity=-0.072  Sum_probs=112.9

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+++++..+|+++.++.++|.++...|++++|++.++++++++|+++.++.++|.++..+|++++|+..++
T Consensus        36 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  115 (568)
T 2vsy_A           36 MGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT  115 (568)
T ss_dssp             HTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhC---CCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEG---HSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~---G~~~deAl~~yd~~i~~~  126 (192)
                      ++++..|+++   .  .+.++|.++...   | ++++|.+.|++.+...
T Consensus       116 ~al~~~p~~~---~--~~~~l~~~~~~~~~~g-~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A          116 RAHQLLPEEP---Y--ITAQLLNWRRRLCDWR-ALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHCTTCH---H--HHHHHHHHHHHTTCCT-THHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCCH---H--HHHHHHHHHHHhhccc-cHHHHHHHHHHHHhcC
Confidence            9999998853   2  445699999999   8 9999999999999885

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.50  E-value=1.5e-12  Score=103.31  Aligned_cols=120  Identities=14%  Similarity=0.122  Sum_probs=92.1

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+++++...|+++.++..+|.++...|++++|++.+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus        50 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  129 (252)
T 2ho1_A           50 RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLL  129 (252)
T ss_dssp             TTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            36777888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HhHh--hccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSS--TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~--~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++.  ..|.     ....+..+|.+++..| ++++|+..|++.+...
T Consensus       130 ~~~~~~~~~~-----~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~  171 (252)
T 2ho1_A          130 EASQDTLYPE-----RSRVFENLGLVSLQMK-KPAQAKEYFEKSLRLN  171 (252)
T ss_dssp             HHTTCTTCTT-----HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred             HHHhCccCcc-----cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC
Confidence            8877  3333     2234445777777777 7888888888877663

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.50  E-value=9e-13  Score=103.38  Aligned_cols=118  Identities=9%  Similarity=0.058  Sum_probs=71.3

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |++++|+..+++++...|+++.++..+|.++...|++++|++.+++++.++|+++.++..+|.++..+|++++|+..+++
T Consensus        71 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  150 (243)
T 2q7f_A           71 NELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQR  150 (243)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            55566666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      ++...|.++     ..+..+|.+++..| ++++|+..|++.+..
T Consensus       151 ~~~~~~~~~-----~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~  188 (243)
T 2q7f_A          151 AVELNENDT-----EARFQFGMCLANEG-MLDEALSQFAAVTEQ  188 (243)
T ss_dssp             HHHHCTTCH-----HHHHHHHHHHHHHT-CCHHHHHHHHHHHHH
T ss_pred             HHHhCCccH-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence            666655532     13334566666665 566666666665554

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.50  E-value=3.4e-13  Score=106.27  Aligned_cols=116  Identities=12%  Similarity=0.009  Sum_probs=102.0

Q ss_pred             HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 029491            5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSS   84 (192)
Q Consensus         5 ~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~   84 (192)
                      .+++..+++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..++++++
T Consensus       122 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  201 (258)
T 3uq3_A          122 EKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE  201 (258)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            33334444444488999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           85 TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        85 ~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ..|+++   .  .+..+|.++...| ++++|+..|++++...
T Consensus       202 ~~~~~~---~--~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          202 KDPNFV---R--AYIRKATAQIAVK-EYASALETLDAARTKD  237 (258)
T ss_dssp             HCTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             hCHHHH---H--HHHHHHHHHHHHh-hHHHHHHHHHHHHHhC
Confidence            998853   2  4556999999999 9999999999998874

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.50  E-value=1.3e-12  Score=106.47  Aligned_cols=119  Identities=11%  Similarity=0.095  Sum_probs=101.8

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g-~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      |++++++..+++++..+|+++.++..+|.++...| ++++|+..+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus        70 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  149 (330)
T 3hym_B           70 NKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYF  149 (330)
T ss_dssp             TCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            78888888888888888888888889999988998 89999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++...|...   .  .+..+|.++...| ++++|+..|++.+...
T Consensus       150 ~a~~~~~~~~---~--~~~~l~~~~~~~~-~~~~A~~~~~~al~~~  189 (330)
T 3hym_B          150 TAAQLMKGCH---L--PMLYIGLEYGLTN-NSKLAERFFSQALSIA  189 (330)
T ss_dssp             HHHHHTTTCS---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHTTC
T ss_pred             HHHHhccccH---H--HHHHHHHHHHHHh-hHHHHHHHHHHHHHhC
Confidence            9998888753   2  3344888888888 8999999998888764

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.49  E-value=2.2e-13  Score=108.88  Aligned_cols=119  Identities=11%  Similarity=0.034  Sum_probs=94.1

Q ss_pred             CChHHHHHHHHhhcCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPY----NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ   77 (192)
Q Consensus         2 G~~~~al~~~~ral~~----~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~   77 (192)
                      |++++|+..+++++..    .|.++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+.
T Consensus        19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~   98 (275)
T 1xnf_A           19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE   98 (275)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence            5677888888888876    345677888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        78 ~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .+++++...|.++   .  .+..+|.++...| ++++|+..|++.+...
T Consensus        99 ~~~~al~~~~~~~---~--~~~~la~~~~~~g-~~~~A~~~~~~a~~~~  141 (275)
T 1xnf_A           99 AFDSVLELDPTYN---Y--AHLNRGIALYYGG-RDKLAQDDLLAFYQDD  141 (275)
T ss_dssp             HHHHHHHHCTTCT---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcCcccc---H--HHHHHHHHHHHhc-cHHHHHHHHHHHHHhC
Confidence            8888888877753   2  3445888888887 7888888888887763

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.49  E-value=2.8e-13  Score=120.77  Aligned_cols=119  Identities=13%  Similarity=0.029  Sum_probs=103.4

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhc--
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL---------GQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHD--   69 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~---------g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~--   69 (192)
                      +|++++|+..+++++..+|+ +.++..+|.++...         |++++|++.+++|++++|+++.++..+|.++..+  
T Consensus       150 ~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~  228 (474)
T 4abn_A          150 KGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYF  228 (474)
T ss_dssp             HTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            37888899999999998888 68888899998888         9999999999999999999999999999999988  


Q ss_pred             ------CCHHHHHHHHHHhHhhcc---CCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           70 ------CCFKEAVQFMEECSSTWS---SCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        70 ------Gr~~eai~~~~~a~~~~p---~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                            |++++|+..+++++++.|   .++     ..+.++|.++...| ++++|+..|++++...
T Consensus       229 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-----~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~  288 (474)
T 4abn_A          229 NTGQNPKISQQALSAYAQAEKVDRKASSNP-----DLHLNRATLHKYEE-SYGEALEGFSQAAALD  288 (474)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHCGGGGGCH-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred             hhccccchHHHHHHHHHHHHHhCCCcccCH-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence                  999999999999999988   532     24556999999998 8999999999998874

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.49  E-value=7.4e-13  Score=103.88  Aligned_cols=120  Identities=11%  Similarity=0.092  Sum_probs=107.1

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus        36 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  115 (243)
T 2q7f_A           36 FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFE  115 (243)
T ss_dssp             ------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHH
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++...|.++   .  .+..+|.+++..| ++++|+..|++.+...
T Consensus       116 ~~~~~~~~~~---~--~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~  155 (243)
T 2q7f_A          116 KALRAGMENG---D--LFYMLGTVLVKLE-QPKLALPYLQRAVELN  155 (243)
T ss_dssp             HHHHHTCCSH---H--HHHHHHHHHHHTS-CHHHHHHHHHHHHHHC
T ss_pred             HHHHhCCCCH---H--HHHHHHHHHHHhc-cHHHHHHHHHHHHHhC
Confidence            9999998753   2  4556999999999 9999999999999874

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.49  E-value=1.4e-13  Score=122.67  Aligned_cols=119  Identities=13%  Similarity=0.061  Sum_probs=111.2

Q ss_pred             CCCh-HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhc---------C
Q 029491            1 MGRP-DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHD---------C   70 (192)
Q Consensus         1 ~G~~-~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~---------G   70 (192)
                      .|++ ++|+..+++++..+|+++.++..+|.++...|++++|++.+++|++++|+ +.++..+|.++..+         |
T Consensus       115 ~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g  193 (474)
T 4abn_A          115 TPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSR  193 (474)
T ss_dssp             SSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHH
T ss_pred             ccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhh
Confidence            4788 99999999999999999999999999999999999999999999999999 79999999999999         9


Q ss_pred             CHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhC--------CCCHHHHHHHHHHhhhhh
Q 029491           71 CFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEG--------HSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        71 r~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~--------G~~~deAl~~yd~~i~~~  126 (192)
                      ++++|+..+++++++.|+++   .  .+..+|.+++..        | ++++|+..|++++...
T Consensus       194 ~~~~A~~~~~~al~~~p~~~---~--~~~~lg~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~  251 (474)
T 4abn_A          194 HVMDSVRQAKLAVQMDVLDG---R--SWYILGNAYLSLYFNTGQNPK-ISQQALSAYAQAEKVD  251 (474)
T ss_dssp             HHHHHHHHHHHHHHHCTTCH---H--HHHHHHHHHHHHHHHTTCCHH-HHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHhCCCCH---H--HHHHHHHHHHHHHHhhccccc-hHHHHHHHHHHHHHhC
Confidence            99999999999999999853   2  455699999888        8 8999999999999874

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.49  E-value=6e-13  Score=110.83  Aligned_cols=119  Identities=10%  Similarity=0.040  Sum_probs=111.1

Q ss_pred             CChHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQ--EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM   79 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~--~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~   79 (192)
                      |++++|+..+++++..+|+  ++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..+
T Consensus       195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  274 (368)
T 1fch_A          195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY  274 (368)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            6788999999999999999  89999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        80 ~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ++++...|..+   .  .+..+|.++...| ++++|+..|++++...
T Consensus       275 ~~al~~~~~~~---~--~~~~l~~~~~~~g-~~~~A~~~~~~al~~~  315 (368)
T 1fch_A          275 RRALELQPGYI---R--SRYNLGISCINLG-AHREAVEHFLEALNMQ  315 (368)
T ss_dssp             HHHHHHCTTCH---H--HHHHHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcH---H--HHHHHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence            99999988753   3  4456999999999 9999999999999875

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.48  E-value=2.7e-13  Score=126.24  Aligned_cols=119  Identities=10%  Similarity=-0.029  Sum_probs=110.8

Q ss_pred             CCChHHHHHHHHhhc--------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCH
Q 029491            1 MGRPDLCFDIIHQVL--------PYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF   72 (192)
Q Consensus         1 ~G~~~~al~~~~ral--------~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~   72 (192)
                      .|++++|+..+++++        ..+|+++.++..+|.++.+.|++++|++.++++++++|+++.++.++|.++..+|++
T Consensus       404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~  483 (681)
T 2pzi_A          404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY  483 (681)
T ss_dssp             TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH
T ss_pred             ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH
Confidence            488999999999999        899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           73 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        73 ~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ++|+..+++++++.|+++   .  .+.++|.++..+| ++++ ++.|++++...
T Consensus       484 ~~A~~~~~~al~l~P~~~---~--~~~~lg~~~~~~g-~~~~-~~~~~~al~~~  530 (681)
T 2pzi_A          484 DSATKHFTEVLDTFPGEL---A--PKLALAATAELAG-NTDE-HKFYQTVWSTN  530 (681)
T ss_dssp             HHHHHHHHHHHHHSTTCS---H--HHHHHHHHHHHHT-CCCT-TCHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCCCh---H--HHHHHHHHHHHcC-ChHH-HHHHHHHHHhC
Confidence            999999999999999964   3  3446999999999 9999 99999999874

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.48  E-value=2.1e-13  Score=100.06  Aligned_cols=89  Identities=10%  Similarity=-0.019  Sum_probs=82.8

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++|++++|+++.++..+|.++..+|++++|+..++
T Consensus        30 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~  109 (121)
T 1hxi_A           30 LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR  109 (121)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCC
Q 029491           81 ECSSTWSSC   89 (192)
Q Consensus        81 ~a~~~~p~~   89 (192)
                      ++++..|..
T Consensus       110 ~al~~~P~~  118 (121)
T 1hxi_A          110 AWLLSQPQY  118 (121)
T ss_dssp             HHHC-----
T ss_pred             HHHHhCcCC
Confidence            999998874

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.48  E-value=5.4e-14  Score=101.50  Aligned_cols=90  Identities=13%  Similarity=0.090  Sum_probs=83.5

Q ss_pred             CCChHHHHHHHHhhcCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPY---NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ   77 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~---~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~   77 (192)
                      +|++++|+..+++++..   +|+++.++.++|.++...|++++|++.++++++++|+++.++..+|.++..+|++++|+.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            58999999999999999   699999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHhhccCCC
Q 029491           78 FMEECSSTWSSCS   90 (192)
Q Consensus        78 ~~~~a~~~~p~~~   90 (192)
                      .+++++...|+++
T Consensus        83 ~~~~al~~~p~~~   95 (117)
T 3k9i_A           83 LLLKIIAETSDDE   95 (117)
T ss_dssp             HHHHHHHHHCCCH
T ss_pred             HHHHHHHhCCCcH
Confidence            9999999999864

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.48  E-value=3.1e-13  Score=93.57  Aligned_cols=104  Identities=9%  Similarity=-0.028  Sum_probs=96.1

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC--CCCcch
Q 029491           17 YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS--CSSFMY   94 (192)
Q Consensus        17 ~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~--~~~~~~   94 (192)
                      .+|+++.++..+|.++...|++++|+..++++++++|+++.++..+|.++..+|++++|+..+++++...|.  ..    
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----   76 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK----   76 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH----
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH----
Confidence            368889999999999999999999999999999999999999999999999999999999999999999988  42    


Q ss_pred             hhhHHHHHHHHHhC-CCCHHHHHHHHHHhhhhh
Q 029491           95 THNWWHVALCYLEG-HSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        95 ~h~~WhlAl~~l~~-G~~~deAl~~yd~~i~~~  126 (192)
                       ..+..+|.++... | ++++|++.+++.+...
T Consensus        77 -~~~~~l~~~~~~~~~-~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           77 -DVWAAKADALRYIEG-KEVEAEIAEARAKLEH  107 (112)
T ss_dssp             -HHHHHHHHHHTTCSS-CSHHHHHHHHHHGGGC
T ss_pred             -HHHHHHHHHHHHHhC-CHHHHHHHHHHHhhcc
Confidence             3556799999999 9 9999999999999874

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.48  E-value=3.9e-13  Score=112.00  Aligned_cols=120  Identities=13%  Similarity=0.032  Sum_probs=104.7

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+++++..+|+++.++..+|.++...|++++|++.++++++++|++.......+..+..+|+.++|++.++
T Consensus       130 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~  209 (287)
T 3qou_A          130 ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQ  209 (287)
T ss_dssp             TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHH
Confidence            47888999999999999999999999999999999999999999999999999888888888888888888888999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++...|+++   .  .+..+|..++..| ++++|++.|++.+...
T Consensus       210 ~al~~~P~~~---~--~~~~la~~l~~~g-~~~~A~~~l~~~l~~~  249 (287)
T 3qou_A          210 QQVAENPEDA---A--LATQLALQLHQVG-RNEEALELLFGHLRXD  249 (287)
T ss_dssp             HHHHHCTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred             HHHhcCCccH---H--HHHHHHHHHHHcc-cHHHHHHHHHHHHhcc
Confidence            9999998853   3  3445999999998 9999999999999974

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.48  E-value=7.8e-13  Score=95.95  Aligned_cols=104  Identities=7%  Similarity=-0.073  Sum_probs=95.3

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhh
Q 029491           17 YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTH   96 (192)
Q Consensus        17 ~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h   96 (192)
                      ..|.++..+..+|..+...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..+++++.+.|.++   .  
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~--   78 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV---K--   78 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---H--
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH---H--
Confidence            46788999999999999999999999999999999999999999999999999999999999999999998853   2  


Q ss_pred             hHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           97 NWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        97 ~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .+..+|.++...| ++++|+..|++++...
T Consensus        79 ~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~  107 (137)
T 3q49_B           79 AHFFLGQCQLEME-SYDEAIANLQRAYSLA  107 (137)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-hHHHHHHHHHHHHHHC
Confidence            4556999999999 9999999999999875

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.48  E-value=1.1e-13  Score=108.68  Aligned_cols=91  Identities=16%  Similarity=0.080  Sum_probs=86.0

Q ss_pred             CCChHHHHHHHHhhcCCCCC-------CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhcc-------cCCCHHHH--
Q 029491            1 MGRPDLCFDIIHQVLPYNQQ-------ED-----FIFGILAFSLLELGQMSDAEEAAKKGLKI-------NKHDCWSQ--   59 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~-------~~-----~~~~~laf~L~e~g~~~eAe~~~rrALaL-------~P~da~A~--   59 (192)
                      .|++++|+..+++|+.++|+       +.     .++.++|.++...|+|++|+..+++||++       +|+++.++  
T Consensus        24 ~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~  103 (159)
T 2hr2_A           24 AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWIS  103 (159)
T ss_dssp             HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHH
Confidence            38999999999999999999       43     39999999999999999999999999999       99999999  


Q ss_pred             --HHHHHHHHhcCCHHHHHHHHHHhHhhccCCCC
Q 029491           60 --HALCHVLQHDCCFKEAVQFMEECSSTWSSCSS   91 (192)
Q Consensus        60 --h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~   91 (192)
                        .++|.++..+||++||+..|++++.+.|.+..
T Consensus       104 ~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~  137 (159)
T 2hr2_A          104 AVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  137 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence              99999999999999999999999999999765

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.48  E-value=3.6e-13  Score=95.28  Aligned_cols=101  Identities=11%  Similarity=0.028  Sum_probs=59.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhh
Q 029491           18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN   97 (192)
Q Consensus        18 ~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~   97 (192)
                      +|.++..+..+|..+...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..+++++...|.++     ..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~   82 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS-----KA   82 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HH
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH-----HH
Confidence            3445555566666666666666666666666666666666666666666666666666666666666655531     13


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHhhh
Q 029491           98 WWHVALCYLEGHSPMRKVLEIYDNHIW  124 (192)
Q Consensus        98 ~WhlAl~~l~~G~~~deAl~~yd~~i~  124 (192)
                      +..+|.++...| ++++|+..|++.+.
T Consensus        83 ~~~~~~~~~~~~-~~~~A~~~~~~~~~  108 (131)
T 2vyi_A           83 YGRMGLALSSLN-KHVEAVAYYKKALE  108 (131)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CHHHHHHHHHHHHh
Confidence            334566666665 56666666666554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.47  E-value=1e-12  Score=106.98  Aligned_cols=119  Identities=12%  Similarity=0.126  Sum_probs=111.6

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |++++|+..+++++...|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..+++
T Consensus       152 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  231 (327)
T 3cv0_A          152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNR  231 (327)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++..|..+     ..++.+|.+++..| ++++|+..|++.+...
T Consensus       232 a~~~~~~~~-----~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~  270 (327)
T 3cv0_A          232 ALDINPGYV-----RVMYNMAVSYSNMS-QYDLAAKQLVRAIYMQ  270 (327)
T ss_dssp             HHHHCTTCH-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCH-----HHHHHHHHHHHHhc-cHHHHHHHHHHHHHhC
Confidence            999988743     25567999999999 9999999999999875

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.47  E-value=2.3e-12  Score=102.22  Aligned_cols=120  Identities=11%  Similarity=-0.011  Sum_probs=110.8

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--ccCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK--INKHDCWSQHALCHVLQHDCCFKEAVQF   78 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALa--L~P~da~A~h~lahvl~~~Gr~~eai~~   78 (192)
                      .|++++|+..+++++...|+++.++..+|.++...|++++|++.+++++.  .+|.++.++..+|.++..+|++++|+..
T Consensus        84 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  163 (252)
T 2ho1_A           84 EMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY  163 (252)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999  8999999999999999999999999999


Q ss_pred             HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++++...|..+     ..+..+|.++...| ++++|+..|++.+...
T Consensus       164 ~~~~~~~~~~~~-----~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~  205 (252)
T 2ho1_A          164 FEKSLRLNRNQP-----SVALEMADLLYKER-EYVPARQYYDLFAQGG  205 (252)
T ss_dssp             HHHHHHHCSCCH-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTS
T ss_pred             HHHHHhcCcccH-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence            999999988743     24556999999998 9999999999988763

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.46  E-value=4.3e-13  Score=114.59  Aligned_cols=119  Identities=14%  Similarity=0.073  Sum_probs=108.1

Q ss_pred             CCChHHHHHHHHhhcCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQE---------------DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHV   65 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~---------------~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahv   65 (192)
                      .|++++|+..+++++...|++               ..++.++|.++...|++++|+..+++||+++|+++.++..+|.+
T Consensus       160 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~  239 (336)
T 1p5q_A          160 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEA  239 (336)
T ss_dssp             HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            389999999999999999998               69999999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHH-HHHHHHhhhh
Q 029491           66 LQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKV-LEIYDNHIWK  125 (192)
Q Consensus        66 l~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deA-l~~yd~~i~~  125 (192)
                      +..+|++++|+..+++++.+.|++.   .  .+..++.++...| +++++ ...|.+.+..
T Consensus       240 ~~~~g~~~~A~~~~~~al~l~P~~~---~--a~~~l~~~~~~~~-~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          240 HLAVNDFELARADFQKVLQLYPNNK---A--AKTQLAVCQQRIR-RQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSSCH---H--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCH---H--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999853   3  4446999999998 89998 5577776654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.46  E-value=1.2e-12  Score=102.71  Aligned_cols=100  Identities=14%  Similarity=0.155  Sum_probs=90.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC-------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHhHhh---
Q 029491           21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH-------D-----CWSQHALCHVLQHDCCFKEAVQFMEECSST---   85 (192)
Q Consensus        21 ~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~-------d-----a~A~h~lahvl~~~Gr~~eai~~~~~a~~~---   85 (192)
                      .++.+...|..+...|+|++|++.+++||+++|+       +     ++++.++|.++..+||++||+..+++++++   
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            4577888999999999999999999999999999       4     449999999999999999999999999999   


Q ss_pred             ----ccCCCCcchhhhH----HHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           86 ----WSSCSSFMYTHNW----WHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        86 ----~p~~~~~~~~h~~----WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                          .|+..     ..|    .+.|.++..+| ++++|+..|++++...
T Consensus        90 ~~e~~pd~~-----~A~~~~~~~rG~aL~~lg-r~eEAl~~y~kAlel~  132 (159)
T 2hr2_A           90 RGELNQDEG-----KLWISAVYSRALALDGLG-RGAEAMPEFKKVVEMI  132 (159)
T ss_dssp             HCCTTSTHH-----HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             cccCCCchH-----HHHHHHHHhHHHHHHHCC-CHHHHHHHHHHHHhcC
Confidence                98742     344    57999999999 9999999999999885

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.46  E-value=7.8e-13  Score=94.41  Aligned_cols=103  Identities=14%  Similarity=0.097  Sum_probs=81.7

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhh
Q 029491           17 YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTH   96 (192)
Q Consensus        17 ~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h   96 (192)
                      ..|..+..+..+|..+...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..+++++...|.++     .
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~   85 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI-----K   85 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH-----H
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch-----H
Confidence            45667788888888888888888888888888888888888888888888888888888888888888877642     2


Q ss_pred             hHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           97 NWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        97 ~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      .+..+|.++...| ++++|+..|++.+..
T Consensus        86 ~~~~la~~~~~~~-~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           86 GYTRKAAALEAMK-DYTKAMDVYQKALDL  113 (133)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-hHHHHHHHHHHHHHh
Confidence            4455888888887 788888888887664

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.46  E-value=5e-13  Score=96.64  Aligned_cols=87  Identities=7%  Similarity=-0.010  Sum_probs=85.0

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+++++..+|+++.++.++|.++...|++++|+..++++++++|+++.++..+|.++..+|++++|+..++
T Consensus        17 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~   96 (126)
T 3upv_A           17 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD   96 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhcc
Q 029491           81 ECSSTWS   87 (192)
Q Consensus        81 ~a~~~~p   87 (192)
                      +++.+.|
T Consensus        97 ~al~~~p  103 (126)
T 3upv_A           97 AARTKDA  103 (126)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhCc
Confidence            9999993

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.46  E-value=1.1e-12  Score=106.86  Aligned_cols=118  Identities=11%  Similarity=0.080  Sum_probs=62.4

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc---------CCCHHHHHHHHHHHHhcCCH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN---------KHDCWSQHALCHVLQHDCCF   72 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~---------P~da~A~h~lahvl~~~Gr~   72 (192)
                      |++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++.+.         |.++.++..+|.++..+|++
T Consensus       173 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  252 (330)
T 3hym_B          173 NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY  252 (330)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred             hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence            455555555555555555555555555555555555555555555555554         44455555555555555555


Q ss_pred             HHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           73 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        73 ~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      ++|+..+++++...|..+   .  .+..+|.++...| ++++|+..|++.+..
T Consensus       253 ~~A~~~~~~a~~~~~~~~---~--~~~~la~~~~~~g-~~~~A~~~~~~al~~  299 (330)
T 3hym_B          253 AEALDYHRQALVLIPQNA---S--TYSAIGYIHSLMG-NFENAVDYFHTALGL  299 (330)
T ss_dssp             HHHHHHHHHHHHHSTTCS---H--HHHHHHHHHHHHT-CHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHhhCccch---H--HHHHHHHHHHHhc-cHHHHHHHHHHHHcc
Confidence            555555555555554432   1  2233555555555 555555555555544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.46  E-value=9.3e-13  Score=101.66  Aligned_cols=120  Identities=8%  Similarity=-0.010  Sum_probs=110.9

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhc--ccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL-GQMSDAEEAAKKGLK--INKHDCWSQHALCHVLQHDCCFKEAVQ   77 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~-g~~~eAe~~~rrALa--L~P~da~A~h~lahvl~~~Gr~~eai~   77 (192)
                      .|++++|+..+++++...|+++.++..+|.++... |++++|+..+++++.  .+|+++.++..+|.++..+|++++|+.
T Consensus        55 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  134 (225)
T 2vq2_A           55 LKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA  134 (225)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence            48999999999999999999999999999999999 999999999999999  778889999999999999999999999


Q ss_pred             HHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        78 ~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .+++++...|..+     ..+..+|.++...| ++++|+..|++.+...
T Consensus       135 ~~~~~~~~~~~~~-----~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~  177 (225)
T 2vq2_A          135 YLKRSLAAQPQFP-----PAFKELARTKMLAG-QLGDADYYFKKYQSRV  177 (225)
T ss_dssp             HHHHHHHHSTTCH-----HHHHHHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCc-----hHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence            9999999988743     25556999999998 9999999999998874

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.45  E-value=1.2e-12  Score=103.10  Aligned_cols=120  Identities=12%  Similarity=0.093  Sum_probs=110.6

Q ss_pred             CCChHHHHHHHHhhcCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----------------------
Q 029491            1 MGRPDLCFDIIHQVLPYNQQE-------DFIFGILAFSLLELGQMSDAEEAAKKGLK-----------------------   50 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~-------~~~~~~laf~L~e~g~~~eAe~~~rrALa-----------------------   50 (192)
                      +|++++|+..+++++...|++       +.++..+|.++...|++++|+..+++++.                       
T Consensus        51 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~  130 (258)
T 3uq3_A           51 KGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEA  130 (258)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHH
Confidence            589999999999999998876       79999999999999999999999999999                       


Q ss_pred             ---ccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           51 ---INKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        51 ---L~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                         ++|+++.++..+|.++..+|++++|+..+++++...|.++   .  .+..+|.+++..| ++++|+..|++.+...
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~--~~~~l~~~~~~~~-~~~~A~~~~~~al~~~  203 (258)
T 3uq3_A          131 EAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA---R--GYSNRAAALAKLM-SFPEAIADCNKAIEKD  203 (258)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred             HHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccH---H--HHHHHHHHHHHhC-CHHHHHHHHHHHHHhC
Confidence               7888999999999999999999999999999999998853   2  4556999999999 9999999999999874

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.45  E-value=4.7e-12  Score=103.88  Aligned_cols=122  Identities=12%  Similarity=0.070  Sum_probs=109.1

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus        16 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~   95 (359)
T 3ieg_A           16 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFK   95 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhcc---CCCCcchhhh----------HHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWS---SCSSFMYTHN----------WWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p---~~~~~~~~h~----------~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++...|   ..+.   ...          .+.+|..+...| ++++|+..|++.+...
T Consensus        96 ~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~  150 (359)
T 3ieg_A           96 KVLKSNPSEQEEKE---AESQLVKADEMQRLRSQALDAFDGA-DYTAAITFLDKILEVC  150 (359)
T ss_dssp             HHHTSCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred             HHHhcCCcccChHH---HHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhC
Confidence            9999988   5332   111          123378888888 8999999999988764

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.45  E-value=1.2e-12  Score=104.45  Aligned_cols=119  Identities=17%  Similarity=0.130  Sum_probs=106.0

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++++|+++.++..+|.++..+|++++|+..++
T Consensus        56 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  135 (275)
T 1xnf_A           56 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL  135 (275)
T ss_dssp             TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++...|+++   ....+  .++. +..| ++++|+..|++.+...
T Consensus       136 ~a~~~~~~~~---~~~~~--~~~~-~~~~-~~~~A~~~~~~~~~~~  174 (275)
T 1xnf_A          136 AFYQDDPNDP---FRSLW--LYLA-EQKL-DEKQAKEVLKQHFEKS  174 (275)
T ss_dssp             HHHHHCTTCH---HHHHH--HHHH-HHHH-CHHHHHHHHHHHHHHS
T ss_pred             HHHHhCCCCh---HHHHH--HHHH-HHhc-CHHHHHHHHHHHHhcC
Confidence            9999998853   22222  4444 4557 8999999998888763

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.44  E-value=4.6e-13  Score=111.55  Aligned_cols=121  Identities=9%  Similarity=0.020  Sum_probs=109.7

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+++++..+|+..+.....+..+.+.++.++|++.++++++++|+++.++.++|.++..+|++++|++.++
T Consensus       164 ~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~  243 (287)
T 3qou_A          164 LNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLF  243 (287)
T ss_dssp             TTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            48999999999999999998888888888889999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      ++++..|+...   ...+-+++.++...| +.++|...|++.+..
T Consensus       244 ~~l~~~p~~~~---~~a~~~l~~~~~~~g-~~~~a~~~~r~al~~  284 (287)
T 3qou_A          244 GHLRXDLTAAD---GQTRXTFQEILAALG-TGDALASXYRRQLYA  284 (287)
T ss_dssp             HHHHHCTTGGG---GHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHhccccccc---chHHHHHHHHHHHcC-CCCcHHHHHHHHHHH
Confidence            99999998532   234445899988898 899999999998864

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.44  E-value=1.1e-12  Score=105.06  Aligned_cols=116  Identities=14%  Similarity=0.081  Sum_probs=56.2

Q ss_pred             CChHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ   77 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~----~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~   77 (192)
                      |++++|+..+++++. .|++    +.++..+|.++...|++++|+..++++++++|+++.++..+|.++..+|++++|+.
T Consensus        51 ~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  129 (272)
T 3u4t_A           51 AKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQ  129 (272)
T ss_dssp             TCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHH
Confidence            445555555555554 2222    22244555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHhHhhccCCCCcchhhhHHHHH-HHHHhCCCCHHHHHHHHHHhhhh
Q 029491           78 FMEECSSTWSSCSSFMYTHNWWHVA-LCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        78 ~~~~a~~~~p~~~~~~~~h~~WhlA-l~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      .+++++...|..+     ..+.++| .++ ..+ ++++|+..|++.+..
T Consensus       130 ~~~~al~~~~~~~-----~~~~~l~~~~~-~~~-~~~~A~~~~~~a~~~  171 (272)
T 3u4t_A          130 YMEKQIRPTTTDP-----KVFYELGQAYY-YNK-EYVKADSSFVKVLEL  171 (272)
T ss_dssp             HHGGGCCSSCCCH-----HHHHHHHHHHH-HTT-CHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCCcH-----HHHHHHHHHHH-HHH-HHHHHHHHHHHHHHh
Confidence            5555555544421     1223345 332 223 455555555555544

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.44  E-value=2.4e-13  Score=121.95  Aligned_cols=114  Identities=10%  Similarity=0.068  Sum_probs=101.1

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+++++..+|+++.++.++|.++.+.|++++|++.+++|++++|+++.++.++|.++..+|++++|+..++
T Consensus        19 ~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~   98 (477)
T 1wao_1           19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE   98 (477)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHH--HHhCCCCHHHHHHHHH
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALC--YLEGHSPMRKVLEIYD  120 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~--~l~~G~~~deAl~~yd  120 (192)
                      +++++.|+++.   .+.  .++.+  ++..| ++++|++.|+
T Consensus        99 ~al~~~p~~~~---~~~--~l~~~~~~~~~g-~~~~A~~~~~  134 (477)
T 1wao_1           99 TVVKVKPHDKD---AKM--KYQECNKIVKQK-AFERAIAGDE  134 (477)
T ss_dssp             HHHHHSTTCTT---HHH--HHHHHHHHHHHH-HHCCC-----
T ss_pred             HHHHhCCCCHH---HHH--HHHHHHHHHHHH-HHHHHhcccc
Confidence            99999998653   333  36666  78888 9999999999

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.44  E-value=1.6e-12  Score=105.10  Aligned_cols=123  Identities=10%  Similarity=-0.006  Sum_probs=110.1

Q ss_pred             CCChHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHH--------cCCHHHHHHHHHHHhcccCCCHHHH----------
Q 029491            1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLE--------LGQMSDAEEAAKKGLKINKHDCWSQ----------   59 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~---~~~~~~laf~L~e--------~g~~~eAe~~~rrALaL~P~da~A~----------   59 (192)
                      +|++++|+..+++++..+|++   +.++..+|.++..        .|++++|+..+++++.++|+++.+.          
T Consensus        65 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~  144 (261)
T 3qky_A           65 NKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR  144 (261)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred             hCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH
Confidence            589999999999999988854   6789999999999        9999999999999999999998888          


Q ss_pred             -------HHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhC----------CCCHHHHHHHHHHh
Q 029491           60 -------HALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEG----------HSPMRKVLEIYDNH  122 (192)
Q Consensus        60 -------h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~----------G~~~deAl~~yd~~  122 (192)
                             ..+|.++..+|++++|+..+++++...|+++.  ....+..+|.++..+          | ++++|+..|++.
T Consensus       145 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~a~~~l~~~~~~~g~~~~~~~~~~-~~~~A~~~~~~~  221 (261)
T 3qky_A          145 AKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPW--ADDALVGAMRAYIAYAEQSVRARQPE-RYRRAVELYERL  221 (261)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT--HHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCch--HHHHHHHHHHHHHHhcccchhhcccc-hHHHHHHHHHHH
Confidence                   77899999999999999999999999998653  344566799988876          7 899999999999


Q ss_pred             hhhh
Q 029491          123 IWKE  126 (192)
Q Consensus       123 i~~~  126 (192)
                      +...
T Consensus       222 ~~~~  225 (261)
T 3qky_A          222 LQIF  225 (261)
T ss_dssp             HHHC
T ss_pred             HHHC
Confidence            9874

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.43  E-value=8.6e-13  Score=107.43  Aligned_cols=125  Identities=10%  Similarity=0.012  Sum_probs=112.4

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus       185 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  264 (327)
T 3cv0_A          185 SNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLV  264 (327)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCc-------chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSF-------MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~-------~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++...|.....       .....+..+|.++...| ++++|...|++.+...
T Consensus       265 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~  316 (327)
T 3cv0_A          265 RAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN-RPDLVELTYAQNVEPF  316 (327)
T ss_dssp             HHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT-CHHHHHHHTTCCSHHH
T ss_pred             HHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhc
Confidence            999999883110       01235557999999999 9999999999887763

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.43  E-value=1.2e-11  Score=101.48  Aligned_cols=88  Identities=9%  Similarity=0.036  Sum_probs=55.3

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |++++|+..+++++...|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..+++
T Consensus       134 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  213 (359)
T 3ieg_A          134 ADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRE  213 (359)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            55666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hHhhccCC
Q 029491           82 CSSTWSSC   89 (192)
Q Consensus        82 a~~~~p~~   89 (192)
                      ++...|+.
T Consensus       214 a~~~~~~~  221 (359)
T 3ieg_A          214 CLKLDQDH  221 (359)
T ss_dssp             HHHHCTTC
T ss_pred             HHhhCccc
Confidence            66665553

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.42  E-value=2.9e-13  Score=115.61  Aligned_cols=117  Identities=9%  Similarity=-0.092  Sum_probs=104.6

Q ss_pred             hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---------------HHHHHHHHHHHHh
Q 029491            4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---------------CWSQHALCHVLQH   68 (192)
Q Consensus         4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---------------a~A~h~lahvl~~   68 (192)
                      +.+++..+++++...|+++.++..+|..+...|+|++|+..+++|+.++|++               +.++.++|.++..
T Consensus       129 ~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~  208 (336)
T 1p5q_A          129 FEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK  208 (336)
T ss_dssp             EECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666677788899999999999999999999999999999999999               6999999999999


Q ss_pred             cCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           69 DCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        69 ~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +|++++|+..+++++.+.|++.   .  .+..+|.+++.+| ++++|+..|++++...
T Consensus       209 ~g~~~~A~~~~~~al~~~p~~~---~--a~~~lg~~~~~~g-~~~~A~~~~~~al~l~  260 (336)
T 1p5q_A          209 LQAFSAAIESCNKALELDSNNE---K--GLSRRGEAHLAVN-DFELARADFQKVLQLY  260 (336)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHhCCCcH---H--HHHHHHHHHHHCC-CHHHHHHHHHHHHHHC
Confidence            9999999999999999999853   3  4456999999999 9999999999999884

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.41  E-value=1e-11  Score=103.62  Aligned_cols=115  Identities=10%  Similarity=0.059  Sum_probs=97.1

Q ss_pred             hHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            4 PDLCFDIIHQVLP-YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW-SQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         4 ~~~al~~~~ral~-~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~-A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      .++|+..++|++. .+|+++.++..+|..+...|++++|++.++++++++|+++. ++.+++.++..+|++++|+..+++
T Consensus        80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  159 (308)
T 2ond_A           80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            3899999999999 79999999999999999999999999999999999999987 999999999999999999999999


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHh---CCCCHHHHHHHHHHhhhhh
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLE---GHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~---~G~~~deAl~~yd~~i~~~  126 (192)
                      ++...|...     +.+  ++...++   .| ++++|..+|++++...
T Consensus       160 a~~~~p~~~-----~~~--~~~a~~~~~~~~-~~~~A~~~~~~al~~~  199 (308)
T 2ond_A          160 AREDARTRH-----HVY--VTAALMEYYCSK-DKSVAFKIFELGLKKY  199 (308)
T ss_dssp             HHTSTTCCT-----HHH--HHHHHHHHHTSC-CHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCH-----HHH--HHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence            998877632     233  3333343   57 7888888888888764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.41  E-value=8.6e-12  Score=88.92  Aligned_cols=104  Identities=11%  Similarity=0.051  Sum_probs=94.9

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus        29 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  108 (133)
T 2lni_A           29 KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQ  108 (133)
T ss_dssp             TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCC
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGH  109 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G  109 (192)
                      +++...|.+.   .  .+..++.++...|
T Consensus       109 ~~~~~~p~~~---~--~~~~l~~~~~~~~  132 (133)
T 2lni_A          109 KALDLDSSCK---E--AADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHCGGGT---H--HHHHHHHHHHHHT
T ss_pred             HHHHhCCCch---H--HHHHHHHHHHHhc
Confidence            9999998854   2  3334777776655

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.41  E-value=3.1e-12  Score=89.61  Aligned_cols=102  Identities=13%  Similarity=0.211  Sum_probs=83.3

Q ss_pred             CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhh
Q 029491           18 NQQE-DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTH   96 (192)
Q Consensus        18 ~p~~-~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h   96 (192)
                      +|.. +..+..+|..+...|++++|++.+++++.++|+++.++..+|.++...|++++|+..+++++...|.++   .  
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~--   78 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---E--   78 (125)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---H--
T ss_pred             CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH---H--
Confidence            4555 677888888888999999999999999999999999999999999999999999999999988877742   2  


Q ss_pred             hHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           97 NWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        97 ~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      .+..+|.++...| ++++|+..|++.+..
T Consensus        79 ~~~~la~~~~~~~-~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           79 AWYNLGNAYYKQG-DYDEAIEYYQKALEL  106 (125)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Confidence            4446888888888 899999999887764

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.40  E-value=6.5e-12  Score=107.52  Aligned_cols=124  Identities=12%  Similarity=0.051  Sum_probs=109.9

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++.+|+..+++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus        39 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  118 (450)
T 2y4t_A           39 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFK  118 (450)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCC---Ccchhh--------hHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCS---SFMYTH--------NWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~---~~~~~h--------~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++...|..+   .. ...        ..+.+|..+...| ++++|+..|++.+...
T Consensus       119 ~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~  173 (450)
T 2y4t_A          119 KVLKSNPSENEEKEA-QSQLIKSDEMQRLRSQALNAFGSG-DYTAAIAFLDKILEVC  173 (450)
T ss_dssp             HHHTSCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHC
T ss_pred             HHHhcCCCChhhHHH-HHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence            9999988743   10 100        1345677888888 8999999999988763

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.40  E-value=3.7e-12  Score=111.26  Aligned_cols=120  Identities=14%  Similarity=0.135  Sum_probs=112.3

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus       289 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  368 (537)
T 3fp2_A          289 KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFN  368 (537)
T ss_dssp             SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++...|.++.     .+..+|.++...| ++++|+..|++++...
T Consensus       369 ~~~~~~~~~~~-----~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~  408 (537)
T 3fp2_A          369 ETKLKFPTLPE-----VPTFFAEILTDRG-DFDTAIKQYDIAKRLE  408 (537)
T ss_dssp             HHHHHCTTCTH-----HHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCChH-----HHHHHHHHHHHhC-CHHHHHHHHHHHHHcC
Confidence            99999988642     3445899999999 9999999999998875

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.40  E-value=1.2e-12  Score=96.64  Aligned_cols=88  Identities=9%  Similarity=0.091  Sum_probs=83.8

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH-------HHHHHHHHHHHhcCCHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC-------WSQHALCHVLQHDCCFK   73 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da-------~A~h~lahvl~~~Gr~~   73 (192)
                      .|++++|+..+.+++.++|+++.++.++|.++.+.|+|++|++.+++||+++|++.       .++..+|.++..+|+++
T Consensus        21 ~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~  100 (127)
T 4gcn_A           21 QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLS  100 (127)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHH
Confidence            48999999999999999999999999999999999999999999999999999874       58899999999999999


Q ss_pred             HHHHHHHHhHhhccC
Q 029491           74 EAVQFMEECSSTWSS   88 (192)
Q Consensus        74 eai~~~~~a~~~~p~   88 (192)
                      +|+..+++++...|+
T Consensus       101 ~A~~~~~kal~~~~~  115 (127)
T 4gcn_A          101 LAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHhhCcC
Confidence            999999999998776

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.40  E-value=7.9e-12  Score=99.98  Aligned_cols=119  Identities=8%  Similarity=0.060  Sum_probs=107.8

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHH----HHHHHHHHHHhcCCHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW----SQHALCHVLQHDCCFKEAV   76 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~----A~h~lahvl~~~Gr~~eai   76 (192)
                      .|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++. .|.++.    ++..+|.++..+|++++|+
T Consensus        16 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~   94 (272)
T 3u4t_A           16 NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAI   94 (272)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHH
Confidence            48999999999999999999999999999999999999999999999999 555544    4899999999999999999


Q ss_pred             HHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           77 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        77 ~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ..+++++...|..+.     .+..+|.++...| ++++|+..|++.+...
T Consensus        95 ~~~~~a~~~~~~~~~-----~~~~l~~~~~~~~-~~~~A~~~~~~al~~~  138 (272)
T 3u4t_A           95 QQYQAAVDRDTTRLD-----MYGQIGSYFYNKG-NFPLAIQYMEKQIRPT  138 (272)
T ss_dssp             HHHHHHHHHSTTCTH-----HHHHHHHHHHHTT-CHHHHHHHHGGGCCSS
T ss_pred             HHHHHHHhcCcccHH-----HHHHHHHHHHHcc-CHHHHHHHHHHHhhcC
Confidence            999999999998642     4456999999999 9999999999999873

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.39  E-value=2.2e-12  Score=93.56  Aligned_cols=89  Identities=11%  Similarity=0.068  Sum_probs=86.8

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+.+++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus        22 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~  101 (137)
T 3q49_B           22 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQ  101 (137)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCC
Q 029491           81 ECSSTWSSC   89 (192)
Q Consensus        81 ~a~~~~p~~   89 (192)
                      +++...|+.
T Consensus       102 ~a~~~~p~~  110 (137)
T 3q49_B          102 RAYSLAKEQ  110 (137)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHChhH
Confidence            999999884

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.39  E-value=4.7e-12  Score=106.07  Aligned_cols=119  Identities=8%  Similarity=-0.078  Sum_probs=66.7

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAF--SLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQF   78 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf--~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~   78 (192)
                      +|+.++|...+++++..+|++.......++  .+...|++++|+..++++++.+|+++.++.++|.++..+|++++|+..
T Consensus       143 ~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~  222 (291)
T 3mkr_A          143 LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGV  222 (291)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence            356666666666666666665433332222  122335666666666666666666666666666666666666666666


Q ss_pred             HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHH-HHHHHHHhhhh
Q 029491           79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRK-VLEIYDNHIWK  125 (192)
Q Consensus        79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~de-Al~~yd~~i~~  125 (192)
                      +++++...|+++   .  .+.+++.++...| ++++ +.+.+++.+..
T Consensus       223 l~~al~~~p~~~---~--~l~~l~~~~~~~g-~~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          223 LQEALDKDSGHP---E--TLINLVVLSQHLG-KPPEVTNRYLSQLKDA  264 (291)
T ss_dssp             HHHHHHHCTTCH---H--HHHHHHHHHHHTT-CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCH---H--HHHHHHHHHHHcC-CCHHHHHHHHHHHHHh
Confidence            666666666542   1  2334666666665 4543 34555555544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.39  E-value=3.2e-12  Score=106.25  Aligned_cols=125  Identities=10%  Similarity=-0.033  Sum_probs=104.7

Q ss_pred             CCChHHHHHHHHhhcCCCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHhcccCCC------HHHHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQE------DFIFGILAFSLLEL-GQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQ   67 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~------~~~~~~laf~L~e~-g~~~eAe~~~rrALaL~P~d------a~A~h~lahvl~   67 (192)
                      +|++++|+..+++++.+.|..      +.++..+|.++... |++++|++.+++|+++.|++      +.++.++|.++.
T Consensus        90 ~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~  169 (292)
T 1qqe_A           90 GGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA  169 (292)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence            489999999999999987643      46888999999996 99999999999999999876      567899999999


Q ss_pred             hcCCHHHHHHHHHHhHhhccCCCCc--chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           68 HDCCFKEAVQFMEECSSTWSSCSSF--MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        68 ~~Gr~~eai~~~~~a~~~~p~~~~~--~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .+|++++|+..+++++.+.|+.+..  .....+..+|++++.+| ++++|+..|++.+...
T Consensus       170 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~  229 (292)
T 1qqe_A          170 LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT-DAVAAARTLQEGQSED  229 (292)
T ss_dssp             HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTT-CHHHHHHHHHGGGCC-
T ss_pred             HhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhC
Confidence            9999999999999999998886431  00113446899999998 8999999999998764

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.39  E-value=1.3e-11  Score=87.01  Aligned_cols=106  Identities=11%  Similarity=0.050  Sum_probs=97.7

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus        25 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  104 (131)
T 2vyi_A           25 VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYK  104 (131)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCH
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPM  112 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~  112 (192)
                      +++...|.++   .  .+..++.++...| ++
T Consensus       105 ~~~~~~p~~~---~--~~~~l~~~~~~~~-~~  130 (131)
T 2vyi_A          105 KALELDPDNE---T--YKSNLKIAELKLR-EA  130 (131)
T ss_dssp             HHHHHSTTCH---H--HHHHHHHHHHHHT-TC
T ss_pred             HHHhcCccch---H--HHHHHHHHHHHHh-cC
Confidence            9999998753   2  4446888888877 54

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.38  E-value=3.2e-13  Score=105.95  Aligned_cols=88  Identities=15%  Similarity=0.033  Sum_probs=83.1

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHhcccCCCHHHHHHHHHHHHhcC-
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQM----------SDAEEAAKKGLKINKHDCWSQHALCHVLQHDC-   70 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~----------~eAe~~~rrALaL~P~da~A~h~lahvl~~~G-   70 (192)
                      +++++|+..+++++..+|+++.++.++|.+|.+.|++          ++|+..+++||+++|+++.++.++|.++..+| 
T Consensus        16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~   95 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF   95 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence            4678999999999999999999999999999999876          59999999999999999999999999999985 


Q ss_pred             ----------CHHHHHHHHHHhHhhccCC
Q 029491           71 ----------CFKEAVQFMEECSSTWSSC   89 (192)
Q Consensus        71 ----------r~~eai~~~~~a~~~~p~~   89 (192)
                                ++++|+..|++|+.++|++
T Consensus        96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           96 LTPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             cCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence                      8999999999999999985

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.38  E-value=2e-11  Score=102.17  Aligned_cols=131  Identities=18%  Similarity=0.166  Sum_probs=91.3

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHH--HHhcCCHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHV--LQHDCCFKEAVQF   78 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahv--l~~~Gr~~eai~~   78 (192)
                      .|++++|+..+++     |+++.++..+|.++...|++++|++.++++++++|++.......+++  +...|++++|+..
T Consensus       114 ~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~  188 (291)
T 3mkr_A          114 DQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYI  188 (291)
T ss_dssp             TTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred             CCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHH
Confidence            3677777777776     67777777777777777777777777788777777776555444433  3334777888888


Q ss_pred             HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHH
Q 029491           79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLR  147 (192)
Q Consensus        79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~R  147 (192)
                      +++++...|+++   .  .++.+|.+++..| ++++|.+.|++++...  |.   .+..+.+-+.+++.
T Consensus       189 ~~~~l~~~p~~~---~--~~~~la~~~~~~g-~~~eA~~~l~~al~~~--p~---~~~~l~~l~~~~~~  246 (291)
T 3mkr_A          189 FQEMADKCSPTL---L--LLNGQAACHMAQG-RWEAAEGVLQEALDKD--SG---HPETLINLVVLSQH  246 (291)
T ss_dssp             HHHHHHHSCCCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC--TT---CHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcH---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHHhC--CC---CHHHHHHHHHHHHH
Confidence            888777777642   2  4556999999998 9999999999999874  42   23444444444433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.37  E-value=4.3e-11  Score=83.70  Aligned_cols=104  Identities=12%  Similarity=0.105  Sum_probs=94.0

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++...|++++|+..++
T Consensus        22 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  101 (125)
T 1na0_A           22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ  101 (125)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCC
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGH  109 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G  109 (192)
                      +++...|..+   .  ....++.++...|
T Consensus       102 ~~~~~~~~~~---~--~~~~l~~~~~~~g  125 (125)
T 1na0_A          102 KALELDPNNA---E--AKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHCTTCH---H--HHHHHHHHHHHHC
T ss_pred             HHHHhCCCcH---H--HHHHHHHHHHhcc
Confidence            9999998853   2  3345777665543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.37  E-value=9.2e-12  Score=99.36  Aligned_cols=125  Identities=9%  Similarity=-0.050  Sum_probs=107.7

Q ss_pred             CCChHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHH---HHHHHHHHHHh------
Q 029491            1 MGRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW---SQHALCHVLQH------   68 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~---~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~---A~h~lahvl~~------   68 (192)
                      .|++++|+..+++++...|+++   .++..+|.++...|++++|++.+++++.++|+++.   ++..+|.++..      
T Consensus        17 ~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~   96 (225)
T 2yhc_A           17 DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSAL   96 (225)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC---
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhh
Confidence            3899999999999999888775   68899999999999999999999999999999986   78899998876      


Q ss_pred             ------------cCCHHHHHHHHHHhHhhccCCCCcchh------------hhHHHHHHHHHhCCCCHHHHHHHHHHhhh
Q 029491           69 ------------DCCFKEAVQFMEECSSTWSSCSSFMYT------------HNWWHVALCYLEGHSPMRKVLEIYDNHIW  124 (192)
Q Consensus        69 ------------~Gr~~eai~~~~~a~~~~p~~~~~~~~------------h~~WhlAl~~l~~G~~~deAl~~yd~~i~  124 (192)
                                  +|++++|+..+++++...|+++.....            .....+|.+++..| ++++|+..|++.+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~  175 (225)
T 2yhc_A           97 QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG-AWVAVVNRVEGMLR  175 (225)
T ss_dssp             -----------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHH
T ss_pred             hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHH
Confidence                        689999999999999999997531000            01145888899998 99999999999998


Q ss_pred             hh
Q 029491          125 KE  126 (192)
Q Consensus       125 ~~  126 (192)
                      ..
T Consensus       176 ~~  177 (225)
T 2yhc_A          176 DY  177 (225)
T ss_dssp             HS
T ss_pred             HC
Confidence            74

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.37  E-value=1.8e-12  Score=98.01  Aligned_cols=90  Identities=12%  Similarity=0.118  Sum_probs=85.8

Q ss_pred             CCChHHHHHHHHhhcCC------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPY------------------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHAL   62 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~------------------~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~l   62 (192)
                      .|++.+|+..+.+++..                  +|.++.++.++|.++...|++++|+..+++||.++|+++.++..+
T Consensus        24 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~  103 (162)
T 3rkv_A           24 QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRR  103 (162)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            48999999999999998                  777789999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHhHhhccCCC
Q 029491           63 CHVLQHDCCFKEAVQFMEECSSTWSSCS   90 (192)
Q Consensus        63 ahvl~~~Gr~~eai~~~~~a~~~~p~~~   90 (192)
                      |.++..+|++++|+..+++++.+.|+++
T Consensus       104 g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A          104 AKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence            9999999999999999999999998853

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.37  E-value=1.5e-11  Score=105.33  Aligned_cols=122  Identities=11%  Similarity=0.147  Sum_probs=63.0

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHH------------HHHHHhc
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHAL------------CHVLQHD   69 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~l------------ahvl~~~   69 (192)
                      |++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++.++|+++..+..+            |.++..+
T Consensus       191 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (450)
T 2y4t_A          191 GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD  270 (450)
T ss_dssp             TCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4555555555555555555555555555555555555555555555555555555554444            5555555


Q ss_pred             CCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           70 CCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        70 Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      |++++|+..+++++...|.++.+ ....+..+|.++...| ++++|+..|++++..
T Consensus       271 g~~~~A~~~~~~~l~~~p~~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~  324 (450)
T 2y4t_A          271 GRYTDATSKYESVMKTEPSIAEY-TVRSKERICHCFSKDE-KPVEAIRVCSEVLQM  324 (450)
T ss_dssp             TCHHHHHHHHHHHHHHCCSSHHH-HHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence            55555555555555555543210 1122333555555555 555555555555543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.37  E-value=2.4e-11  Score=107.80  Aligned_cols=123  Identities=11%  Similarity=0.137  Sum_probs=95.0

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |++++|+..+++++...|+++.++..++.++...|++++|++.++++++++|+++.++..++.++...|++++|+..+++
T Consensus       421 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  500 (597)
T 2xpi_A          421 GEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQN  500 (597)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            67788888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hHhhccC---CCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           82 CSSTWSS---CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        82 a~~~~p~---~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ++...|+   .|. -....+..++.++...| ++++|+..|++.+...
T Consensus       501 ~~~~~~~~~~~p~-~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~  546 (597)
T 2xpi_A          501 ALLLVKKTQSNEK-PWAATWANLGHAYRKLK-MYDAAIDALNQGLLLS  546 (597)
T ss_dssp             HHHHHHHSCCCSG-GGHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHS
T ss_pred             HHHhhhccccchh-hHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC
Confidence            8877543   221 01334556788888887 7888888888877763

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.37  E-value=8.5e-12  Score=98.73  Aligned_cols=100  Identities=13%  Similarity=0.006  Sum_probs=91.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHhHh
Q 029491           21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA----------------LCHVLQHDCCFKEAVQFMEECSS   84 (192)
Q Consensus        21 ~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~----------------lahvl~~~Gr~~eai~~~~~a~~   84 (192)
                      .+..+...|..+...|++++|+..++++++++|+++.++..                +|.++..+|++++|+..+++++.
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            45566788999999999999999999999999999999999                99999999999999999999999


Q ss_pred             hccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           85 TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        85 ~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +.|+++   .  .+..+|.+++..| ++++|+..|++.+...
T Consensus        83 ~~p~~~---~--~~~~lg~~~~~~g-~~~~A~~~~~~al~~~  118 (208)
T 3urz_A           83 KAPNNV---D--CLEACAEMQVCRG-QEKDALRMYEKILQLE  118 (208)
T ss_dssp             HCTTCH---H--HHHHHHHHHHHHT-CHHHHHHHHHHHHHHC
T ss_pred             HCCCCH---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHHcC
Confidence            999863   3  4445999999999 9999999999999985

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.37  E-value=9.3e-12  Score=103.81  Aligned_cols=119  Identities=5%  Similarity=-0.090  Sum_probs=106.2

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh-cCCHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDF-IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH-DCCFKEAVQF   78 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~-~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~-~Gr~~eai~~   78 (192)
                      .|+.++|+..+++++...|+++. ++..+|..+...|++++|++.+++|++++|.++.++...+..... +|++++|+..
T Consensus       112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~  191 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI  191 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            48899999999999999999986 899999999999999999999999999999998888776666443 7999999999


Q ss_pred             HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      +++++...|+++     ..|-.++.++...| ++++|..+|++++..
T Consensus       192 ~~~al~~~p~~~-----~~~~~~~~~~~~~g-~~~~A~~~~~~al~~  232 (308)
T 2ond_A          192 FELGLKKYGDIP-----EYVLAYIDYLSHLN-EDNNTRVLFERVLTS  232 (308)
T ss_dssp             HHHHHHHHTTCH-----HHHHHHHHHHHTTC-CHHHHHHHHHHHHHS
T ss_pred             HHHHHHhCCCcH-----HHHHHHHHHHHHCC-CHHHHHHHHHHHHhc
Confidence            999999999853     25556888888898 999999999999984

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.37  E-value=2.6e-12  Score=106.80  Aligned_cols=123  Identities=10%  Similarity=-0.010  Sum_probs=104.7

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+++++..+|+++.++.++|.++...|++++|+..+++|++++|+++.++..+|.++..+|++++|+..++
T Consensus        17 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   96 (281)
T 2c2l_A           17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQ   96 (281)
T ss_dssp             TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhh--------------------------HHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHN--------------------------WWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~--------------------------~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++.+.|+++..+....                          .-+++.+  ..| ++++|++.|++++...
T Consensus        97 ~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~-~~~~A~~~~~~al~~~  165 (281)
T 2c2l_A           97 RAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAA-ERERELEECQRNHEGH  165 (281)
T ss_dssp             HHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHH-HHHHHHTTTSGGGTTT
T ss_pred             HHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHH-HHHHHHHHHHhhhccc
Confidence            99999997642111001                          1122222  346 7899999998888764

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.36  E-value=1.4e-11  Score=87.12  Aligned_cols=107  Identities=7%  Similarity=0.069  Sum_probs=94.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcc--hhh
Q 029491           19 QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFM--YTH   96 (192)
Q Consensus        19 p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~--~~h   96 (192)
                      |+.+..+..+|..+...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..+++++...|..+...  ...
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~   80 (131)
T 1elr_A            1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK   80 (131)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence            345677889999999999999999999999999999999999999999999999999999999999988753210  044


Q ss_pred             hHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           97 NWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        97 ~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .+..+|.++...| ++++|...|++.+...
T Consensus        81 ~~~~la~~~~~~~-~~~~A~~~~~~~~~~~  109 (131)
T 1elr_A           81 AYARIGNSYFKEE-KYKDAIHFYNKSLAEH  109 (131)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhc-cHHHHHHHHHHHHHhC
Confidence            6677999999998 9999999999999873

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.36  E-value=4.1e-12  Score=98.98  Aligned_cols=116  Identities=16%  Similarity=-0.015  Sum_probs=98.3

Q ss_pred             CCChHHHHHHHHhhcCCCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQED----------------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCH   64 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~----------------~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lah   64 (192)
                      .|++.+|+..+.+++...|.++                .++.++|.++...|++++|+..+++++.++|+++.++..+|.
T Consensus        51 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  130 (198)
T 2fbn_A           51 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGV  130 (198)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            4899999999999999999887                899999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHH-HHHHHh
Q 029491           65 VLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVL-EIYDNH  122 (192)
Q Consensus        65 vl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl-~~yd~~  122 (192)
                      ++..+|++++|+..+++++.+.|.++   .  .+..++.++...| +++++. ..|.+.
T Consensus       131 ~~~~~~~~~~A~~~~~~al~~~p~~~---~--~~~~l~~~~~~~~-~~~~~~~~~~~~~  183 (198)
T 2fbn_A          131 ANMYFGFLEEAKENLYKAASLNPNNL---D--IRNSYELCVNKLK-EARKKDKLTFGGM  183 (198)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSTTCH---H--HHHHHHHHHHHHH-HHHC---------
T ss_pred             HHHHcccHHHHHHHHHHHHHHCCCcH---H--HHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            99999999999999999999999853   2  3345888887777 777776 444443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.36  E-value=6.6e-12  Score=86.70  Aligned_cols=90  Identities=11%  Similarity=0.021  Sum_probs=86.8

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC--CHHHHHHHHHHHHhc-CCHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH--DCWSQHALCHVLQHD-CCFKEAVQ   77 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~--da~A~h~lahvl~~~-Gr~~eai~   77 (192)
                      .|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++.++|+  ++.++..+|.++..+ |++++|+.
T Consensus        19 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~   98 (112)
T 2kck_A           19 AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEI   98 (112)
T ss_dssp             SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHH
Confidence            489999999999999999999999999999999999999999999999999999  999999999999999 99999999


Q ss_pred             HHHHhHhhccCCC
Q 029491           78 FMEECSSTWSSCS   90 (192)
Q Consensus        78 ~~~~a~~~~p~~~   90 (192)
                      .+++++...|..+
T Consensus        99 ~~~~~~~~~p~~~  111 (112)
T 2kck_A           99 AEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHGGGCCCCC
T ss_pred             HHHHHhhcccCCC
Confidence            9999999998753

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=9.7e-12  Score=90.41  Aligned_cols=106  Identities=7%  Similarity=-0.087  Sum_probs=96.6

Q ss_pred             cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCC
Q 029491           15 LPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSS   91 (192)
Q Consensus        15 l~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~   91 (192)
                      ....|.++..+..+|..+...|++++|+..+++++.++|++   +.++..+|.++..+|++++|+..+++++...|.++ 
T Consensus        21 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-   99 (148)
T 2dba_A           21 ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV-   99 (148)
T ss_dssp             CCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH-
T ss_pred             CccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH-
Confidence            44567889999999999999999999999999999999998   99999999999999999999999999999988752 


Q ss_pred             cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           92 FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        92 ~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                        .  .++.+|.++...| ++++|+..|++.+...
T Consensus       100 --~--~~~~~a~~~~~~~-~~~~A~~~~~~al~~~  129 (148)
T 2dba_A          100 --K--ALYRRSQALEKLG-RLDQAVLDLQRCVSLE  129 (148)
T ss_dssp             --H--HHHHHHHHHHHHT-CHHHHHHHHHHHHHHC
T ss_pred             --H--HHHHHHHHHHHcC-CHHHHHHHHHHHHHcC
Confidence              2  4556999999998 9999999999999874

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.35  E-value=1.1e-11  Score=86.05  Aligned_cols=98  Identities=9%  Similarity=0.028  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHH
Q 029491           22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHV  101 (192)
Q Consensus        22 ~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~Whl  101 (192)
                      +..+..+|..+...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..+++++...|..+     ..+..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~   78 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG-----KGYSRK   78 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-----HHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH-----HHHHHH
Confidence            345556666666677777777777777777777777777777777777777777777777766666532     133446


Q ss_pred             HHHHHhCCCCHHHHHHHHHHhhhh
Q 029491          102 ALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus       102 Al~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      |.++...| ++++|...|++.+..
T Consensus        79 a~~~~~~~-~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           79 AAALEFLN-RFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred             HHHHHHHh-hHHHHHHHHHHHHHc
Confidence            66666666 677777776666543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.35  E-value=4.4e-12  Score=100.69  Aligned_cols=123  Identities=11%  Similarity=0.093  Sum_probs=107.8

Q ss_pred             CCChHHHHHHHHhhcCC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------cCCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPY--------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI--------NKHDCWSQHALCH   64 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~--------~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL--------~P~da~A~h~lah   64 (192)
                      +|++++|+..+++++..        .|....++..+|.++...|++++|+..+++++.+        +|..+.++..+|.
T Consensus        98 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  177 (283)
T 3edt_B           98 RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS  177 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            48999999999999987        5777899999999999999999999999999999        8889999999999


Q ss_pred             HHHhcCCHHHHHHHHHHhHhhccC---------------------------------------------CCCcchhhhHH
Q 029491           65 VLQHDCCFKEAVQFMEECSSTWSS---------------------------------------------CSSFMYTHNWW   99 (192)
Q Consensus        65 vl~~~Gr~~eai~~~~~a~~~~p~---------------------------------------------~~~~~~~h~~W   99 (192)
                      ++..+|++++|+..+++++...+.                                             ..+ -....+.
T Consensus       178 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  256 (283)
T 3edt_B          178 CYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP-TVNTTLR  256 (283)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH-HHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH-HHHHHHH
Confidence            999999999999999999987432                                             111 1233566


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491          100 HVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus       100 hlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      .+|.++...| ++++|...|++++..
T Consensus       257 ~la~~~~~~g-~~~~A~~~~~~al~~  281 (283)
T 3edt_B          257 SLGALYRRQG-KLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence            7999999999 999999999998864

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.34  E-value=2e-11  Score=84.76  Aligned_cols=90  Identities=13%  Similarity=0.104  Sum_probs=86.8

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|...+++++..+|+++.++..+|.++...|++++|...+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus        17 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~   96 (118)
T 1elw_A           17 VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYE   96 (118)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCC
Q 029491           81 ECSSTWSSCS   90 (192)
Q Consensus        81 ~a~~~~p~~~   90 (192)
                      +++...|.++
T Consensus        97 ~~~~~~~~~~  106 (118)
T 1elw_A           97 EGLKHEANNP  106 (118)
T ss_dssp             HHHTTCTTCH
T ss_pred             HHHHcCCCCH
Confidence            9999988853

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.34  E-value=4.9e-11  Score=85.44  Aligned_cols=100  Identities=12%  Similarity=0.020  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHH
Q 029491           24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWH  100 (192)
Q Consensus        24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da---~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~Wh  100 (192)
                      .+..+|..+...|++++|+..+++++..+|+++   .++..+|.++..+|++++|+..+++++...|+++.  .......
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~~~~~   81 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK--AAGGLLK   81 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT--HHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc--cHHHHHH
Confidence            456788999999999999999999999999999   79999999999999999999999999999998642  2335567


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491          101 VALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus       101 lAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +|.++...| ++++|+..|++.+...
T Consensus        82 la~~~~~~g-~~~~A~~~~~~~~~~~  106 (129)
T 2xev_A           82 LGLSQYGEG-KNTEAQQTLQQVATQY  106 (129)
T ss_dssp             HHHHHHHTT-CHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcC-CHHHHHHHHHHHHHHC
Confidence            999999999 9999999999999874

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.34  E-value=6.1e-12  Score=104.51  Aligned_cols=125  Identities=14%  Similarity=0.120  Sum_probs=107.4

Q ss_pred             CCChHHHHHHHHhhcCCCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC------HHHHHHHHHHHHh
Q 029491            1 MGRPDLCFDIIHQVLPYNQ------QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQH   68 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p------~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d------a~A~h~lahvl~~   68 (192)
                      .|++++|+..+++++...+      ..+.++..+|.++...|++++|+..+++|+.+.|..      +.++.++|.++..
T Consensus        50 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~  129 (292)
T 1qqe_A           50 RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN  129 (292)
T ss_dssp             TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            4899999999999998743      236789999999999999999999999999999875      6789999999999


Q ss_pred             c-CCHHHHHHHHHHhHhhccCCCCc-chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           69 D-CCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        69 ~-Gr~~eai~~~~~a~~~~p~~~~~-~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      + |++++|+..+++++.+.|..+.. .....+-++|.++..+| +|++|+..|++.+...
T Consensus       130 ~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~  188 (292)
T 1qqe_A          130 DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG-QYIEASDIYSKLIKSS  188 (292)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTT
T ss_pred             hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHH
Confidence            6 99999999999999999875321 01223456999999999 9999999999999874

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.33  E-value=4.2e-11  Score=106.31  Aligned_cols=118  Identities=8%  Similarity=0.073  Sum_probs=80.1

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |+.++++..+++++...|+++.++..+|.++..+|++++|++.++++++++|+++.++..++.++...|++++|+..+++
T Consensus       353 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  432 (597)
T 2xpi_A          353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT  432 (597)
T ss_dssp             TCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            55556666666666666666777777777777777777777777777777777777777777777777777777777777


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      ++...|.+.   .  .+..++.++...| ++++|+..|++.+..
T Consensus       433 ~~~~~~~~~---~--~~~~l~~~~~~~g-~~~~A~~~~~~~~~~  470 (597)
T 2xpi_A          433 AARLFQGTH---L--PYLFLGMQHMQLG-NILLANEYLQSSYAL  470 (597)
T ss_dssp             HHHTTTTCS---H--HHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred             HHHhCccch---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence            777666532   2  2334666666666 677777777776654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.33  E-value=9.3e-12  Score=95.37  Aligned_cols=125  Identities=9%  Similarity=-0.087  Sum_probs=101.4

Q ss_pred             CCChHHHHHHHHhhcC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---cC----CCHHHHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLP------YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI---NK----HDCWSQHALCHVLQ   67 (192)
Q Consensus         1 ~G~~~~al~~~~ral~------~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL---~P----~da~A~h~lahvl~   67 (192)
                      .|++++|+..+++++.      ..|..+.++.++|.++...|++++|++.+++++++   .|    ..+.++.++|.++.
T Consensus        39 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~  118 (203)
T 3gw4_A           39 MDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL  118 (203)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred             hCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence            4888999999999988      45566788999999999999999999999999998   44    34577899999999


Q ss_pred             hcCCHHHHHHHHHHhHhhccCCCCc-chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           68 HDCCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        68 ~~Gr~~eai~~~~~a~~~~p~~~~~-~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .+|++++|+..++++++..+..+.. ........+|.++...| ++++|...+++++...
T Consensus       119 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          119 HFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK-NLLEAQQHWLRARDIF  177 (203)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHHH
Confidence            9999999999999999776553321 12233457899999998 8999999999988774

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.33  E-value=1.4e-11  Score=98.33  Aligned_cols=122  Identities=7%  Similarity=-0.009  Sum_probs=106.9

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHH---HHHHHHHHHHH------------------cCCHHHHHHHHHHHhcccCCCHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDF---IFGILAFSLLE------------------LGQMSDAEEAAKKGLKINKHDCWSQ   59 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~---~~~~laf~L~e------------------~g~~~eAe~~~rrALaL~P~da~A~   59 (192)
                      +|++++|+..+++++..+|+++.   ++.++|.++.+                  .|++++|+..+++++...|+++.+.
T Consensus        54 ~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~  133 (225)
T 2yhc_A           54 NADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTT  133 (225)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHH
T ss_pred             cCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence            58999999999999999998864   78888988876                  5799999999999999999999876


Q ss_pred             -----------------HHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHh
Q 029491           60 -----------------HALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNH  122 (192)
Q Consensus        60 -----------------h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~  122 (192)
                                       ..+|.++..+|++++|+..+++++...|+++.  .......+|.++..+| ++++|+..+++.
T Consensus       134 ~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~--~~~a~~~l~~~~~~~g-~~~~A~~~~~~l  210 (225)
T 2yhc_A          134 DATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQA--TRDALPLMENAYRQMQ-MNAQAEKVAKII  210 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHH--HHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCc--cHHHHHHHHHHHHHcC-CcHHHHHHHHHH
Confidence                             57889999999999999999999999999642  2335556999999999 999999999877


Q ss_pred             hhh
Q 029491          123 IWK  125 (192)
Q Consensus       123 i~~  125 (192)
                      +..
T Consensus       211 ~~~  213 (225)
T 2yhc_A          211 AAN  213 (225)
T ss_dssp             HHC
T ss_pred             Hhh
Confidence            665

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.33  E-value=8.3e-12  Score=110.99  Aligned_cols=119  Identities=16%  Similarity=0.103  Sum_probs=102.5

Q ss_pred             CCChHHHHHHHHhhcCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQE---------------DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHV   65 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~---------------~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahv   65 (192)
                      .|++.+|+..+.+++..+|.+               ..++.++|.++...|+|++|+..+++||.++|+++.++..+|.+
T Consensus       281 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a  360 (457)
T 1kt0_A          281 GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEA  360 (457)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            489999999999999999998               69999999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHH-HHHHhhhh
Q 029491           66 LQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLE-IYDNHIWK  125 (192)
Q Consensus        66 l~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~-~yd~~i~~  125 (192)
                      +..+|++++|+..+++++.+.|++..     .+..++.++..+| +++++.+ .|.+.+..
T Consensus       361 ~~~~g~~~~A~~~~~~al~l~P~~~~-----a~~~l~~~~~~~~-~~~~a~~~~~~~~f~k  415 (457)
T 1kt0_A          361 QLLMNEFESAKGDFEKVLEVNPQNKA-----ARLQISMCQKKAK-EHNERDRRIYANMFKK  415 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTC----C-----HHHHHHHHHHHHH-HHHHHHHHHHHHC---
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence            99999999999999999999998653     4556999998888 8888764 55555443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.32  E-value=2.6e-11  Score=105.89  Aligned_cols=119  Identities=9%  Similarity=0.005  Sum_probs=111.4

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+++++..+|+ +.++..+|.++...|++++|++.+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus       256 ~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  334 (537)
T 3fp2_A          256 KNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ  334 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            47899999999999999999 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++...|.++   .  .+..+|.++...| ++++|+..|++.+...
T Consensus       335 ~a~~~~~~~~---~--~~~~la~~~~~~g-~~~~A~~~~~~~~~~~  374 (537)
T 3fp2_A          335 KAQSLNPENV---Y--PYIQLACLLYKQG-KFTESEAFFNETKLKF  374 (537)
T ss_dssp             HHHHHCTTCS---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred             HHHHhCCCCH---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence            9999998864   2  4556999999999 9999999999999874

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.32  E-value=1.7e-11  Score=101.78  Aligned_cols=102  Identities=7%  Similarity=-0.077  Sum_probs=94.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhH
Q 029491           19 QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNW   98 (192)
Q Consensus        19 p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~   98 (192)
                      |.++..+..+|..+...|++++|+..+++|++++|+++.++.++|.++..+|++++|+..+++++.+.|++.   .  .+
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~--~~   75 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV---K--AH   75 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH---H--HH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---H--HH
Confidence            677889999999999999999999999999999999999999999999999999999999999999998853   3  34


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           99 WHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        99 WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ..+|.++..+| ++++|+..|++++...
T Consensus        76 ~~lg~~~~~~g-~~~~A~~~~~~al~l~  102 (281)
T 2c2l_A           76 FFLGQCQLEME-SYDEAIANLQRAYSLA  102 (281)
T ss_dssp             HHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence            45999999999 9999999999998774

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=2.6e-11  Score=88.11  Aligned_cols=90  Identities=18%  Similarity=0.127  Sum_probs=86.5

Q ss_pred             CCChHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ   77 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~---~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~   77 (192)
                      .|++.+|+..+++++..+|++   +.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+.
T Consensus        41 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~  120 (148)
T 2dba_A           41 CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVL  120 (148)
T ss_dssp             TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHH
Confidence            489999999999999999998   89999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHhhccCCC
Q 029491           78 FMEECSSTWSSCS   90 (192)
Q Consensus        78 ~~~~a~~~~p~~~   90 (192)
                      .+++++...|+++
T Consensus       121 ~~~~al~~~p~~~  133 (148)
T 2dba_A          121 DLQRCVSLEPKNK  133 (148)
T ss_dssp             HHHHHHHHCSSCH
T ss_pred             HHHHHHHcCCCcH
Confidence            9999999998853

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.32  E-value=1.3e-11  Score=87.99  Aligned_cols=86  Identities=15%  Similarity=0.003  Sum_probs=81.3

Q ss_pred             HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 029491            5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSS   84 (192)
Q Consensus         5 ~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~   84 (192)
                      .+++..+++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..+++++.
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCC
Q 029491           85 TWSSCS   90 (192)
Q Consensus        85 ~~p~~~   90 (192)
                      +.|...
T Consensus        82 ~~~~~~   87 (115)
T 2kat_A           82 AAQSRG   87 (115)
T ss_dssp             HHHHHT
T ss_pred             hccccc
Confidence            988743

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.31  E-value=7.7e-12  Score=99.25  Aligned_cols=122  Identities=14%  Similarity=0.178  Sum_probs=106.8

Q ss_pred             CCChHHHHHHHHhhcCC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------cCCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPY--------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI--------NKHDCWSQHALCH   64 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~--------~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL--------~P~da~A~h~lah   64 (192)
                      +|++++|+..+++++..        .|..+.++..+|.++...|++++|++.+++++.+        +|..+.++.++|.
T Consensus        56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  135 (283)
T 3edt_B           56 QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLAL  135 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            58999999999999976        4677889999999999999999999999999999        6888999999999


Q ss_pred             HHHhcCCHHHHHHHHHHhHhhc-----cCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           65 VLQHDCCFKEAVQFMEECSSTW-----SSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        65 vl~~~Gr~~eai~~~~~a~~~~-----p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      ++..+|++++|+..+++++...     ++.+.  ....+..+|.++...| ++++|+..|++.+..
T Consensus       136 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          136 LCQNQGKAEEVEYYYRRALEIYATRLGPDDPN--VAKTKNNLASCYLKQG-KYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH--HHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence            9999999999999999999872     11111  2345557999999999 999999999999975

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.31  E-value=1.1e-11  Score=107.13  Aligned_cols=120  Identities=12%  Similarity=0.122  Sum_probs=111.9

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++...|++++|+..++
T Consensus       283 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  362 (514)
T 2gw1_A          283 RNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS  362 (514)
T ss_dssp             SSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++...|.++   .  .+..+|.++...| ++++|+..|++.+...
T Consensus       363 ~~~~~~~~~~---~--~~~~la~~~~~~~-~~~~A~~~~~~a~~~~  402 (514)
T 2gw1_A          363 EAKRKFPEAP---E--VPNFFAEILTDKN-DFDKALKQYDLAIELE  402 (514)
T ss_dssp             HHHHHSTTCS---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHcccCH---H--HHHHHHHHHHHCC-CHHHHHHHHHHHHHhh
Confidence            9999998854   2  4456999999999 9999999999998875

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.31  E-value=2e-11  Score=87.52  Aligned_cols=90  Identities=12%  Similarity=-0.008  Sum_probs=85.9

Q ss_pred             CCChHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---HHHHHHHHHHHHhcCCHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKE   74 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~---~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---a~A~h~lahvl~~~Gr~~e   74 (192)
                      .|++++|+..+++++..+|+++   .++..+|.++...|++++|+..+++++.++|++   +.++..+|.++..+|++++
T Consensus        15 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~   94 (129)
T 2xev_A           15 NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTE   94 (129)
T ss_dssp             TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHH
T ss_pred             hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHH
Confidence            4899999999999999999998   799999999999999999999999999999999   8999999999999999999


Q ss_pred             HHHHHHHhHhhccCCC
Q 029491           75 AVQFMEECSSTWSSCS   90 (192)
Q Consensus        75 ai~~~~~a~~~~p~~~   90 (192)
                      |+..+++++...|+++
T Consensus        95 A~~~~~~~~~~~p~~~  110 (129)
T 2xev_A           95 AQQTLQQVATQYPGSD  110 (129)
T ss_dssp             HHHHHHHHHHHSTTSH
T ss_pred             HHHHHHHHHHHCCCCh
Confidence            9999999999998853

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.31  E-value=4.1e-11  Score=103.61  Aligned_cols=125  Identities=8%  Similarity=-0.025  Sum_probs=113.5

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      +|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus       317 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  396 (514)
T 2gw1_A          317 LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYD  396 (514)
T ss_dssp             TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcc-hhhhHHHHHHHHHh---CCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFM-YTHNWWHVALCYLE---GHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~-~~h~~WhlAl~~l~---~G~~~deAl~~yd~~i~~~  126 (192)
                      +++...|..+... ....+..+|.+++.   .| ++++|+..|++.+...
T Consensus       397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~A~~~~~~a~~~~  445 (514)
T 2gw1_A          397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVE-NFIEATNLLEKASKLD  445 (514)
T ss_dssp             HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT-HHHHHHHHHHHHHHHC
T ss_pred             HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC-CHHHHHHHHHHHHHhC
Confidence            9999999865310 01245569999999   98 9999999999999874

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.30  E-value=4.8e-11  Score=88.32  Aligned_cols=100  Identities=9%  Similarity=0.034  Sum_probs=91.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHH
Q 029491           21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWH  100 (192)
Q Consensus        21 ~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~Wh  100 (192)
                      .+..+..+|..+...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..+++++...|..+   .  .+..
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~---~--~~~~   86 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI---K--GYYR   86 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---H--HHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---H--HHHH
Confidence            3577889999999999999999999999999999999999999999999999999999999999998753   2  4556


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491          101 VALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus       101 lAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +|.++...| ++++|+..|++.+...
T Consensus        87 ~a~~~~~~~-~~~~A~~~~~~a~~~~  111 (166)
T 1a17_A           87 RAASNMALG-KFRAALRDYETVVKVK  111 (166)
T ss_dssp             HHHHHHHTT-CHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhc-cHHHHHHHHHHHHHhC
Confidence            999999999 9999999999999874

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.29  E-value=9.7e-12  Score=96.84  Aligned_cols=101  Identities=9%  Similarity=0.010  Sum_probs=92.0

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 029491           20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC----------------WSQHALCHVLQHDCCFKEAVQFMEECS   83 (192)
Q Consensus        20 ~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da----------------~A~h~lahvl~~~Gr~~eai~~~~~a~   83 (192)
                      ..+..+..+|..+...|+|++|+..+++++.+.|+++                .++.++|.++..+|++++|+..+++++
T Consensus        36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  115 (198)
T 2fbn_A           36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL  115 (198)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            4567788999999999999999999999999999998                999999999999999999999999999


Q ss_pred             hhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           84 STWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        84 ~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ...|.+.   .  .+..+|.++..+| ++++|+..|++++...
T Consensus       116 ~~~p~~~---~--~~~~lg~~~~~~~-~~~~A~~~~~~al~~~  152 (198)
T 2fbn_A          116 KIDKNNV---K--ALYKLGVANMYFG-FLEEAKENLYKAASLN  152 (198)
T ss_dssp             HHSTTCH---H--HHHHHHHHHHHHT-CHHHHHHHHHHHHHHS
T ss_pred             HhCcccH---H--HHHHHHHHHHHcc-cHHHHHHHHHHHHHHC
Confidence            9998753   3  4456999999999 9999999999999874

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.28  E-value=2.7e-11  Score=91.39  Aligned_cols=100  Identities=9%  Similarity=-0.022  Sum_probs=91.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------------------cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491           21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKI------------------NKHDCWSQHALCHVLQHDCCFKEAVQFMEEC   82 (192)
Q Consensus        21 ~~~~~~~laf~L~e~g~~~eAe~~~rrALaL------------------~P~da~A~h~lahvl~~~Gr~~eai~~~~~a   82 (192)
                      .+..+...|..+...|+|++|+..+++|+.+                  +|.++.++.++|.++..+|++++|+..++++
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3567788999999999999999999999999                  8888899999999999999999999999999


Q ss_pred             HhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        83 ~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +.+.|.+.   .  .+..+|.++..+| ++++|+..|++++...
T Consensus        90 l~~~p~~~---~--a~~~~g~~~~~~g-~~~~A~~~~~~al~l~  127 (162)
T 3rkv_A           90 LKREETNE---K--ALFRRAKARIAAW-KLDEAEEDLKLLLRNH  127 (162)
T ss_dssp             HHHSTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred             HhcCCcch---H--HHHHHHHHHHHHh-cHHHHHHHHHHHHhcC
Confidence            99998853   3  4456999999999 9999999999999884

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.28  E-value=2.9e-12  Score=113.97  Aligned_cols=116  Identities=8%  Similarity=-0.076  Sum_probs=103.1

Q ss_pred             HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---------------HHHHHHHHHHHHhc
Q 029491            5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---------------CWSQHALCHVLQHD   69 (192)
Q Consensus         5 ~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---------------a~A~h~lahvl~~~   69 (192)
                      .+++..+++++...|+.+..+..+|..+...|+|++|+..+++|++++|++               +.++.++|.++..+
T Consensus       251 ~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~  330 (457)
T 1kt0_A          251 EKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL  330 (457)
T ss_dssp             ECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344455556666678889999999999999999999999999999999999               79999999999999


Q ss_pred             CCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           70 CCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        70 Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      |++++|+..+++++.+.|++.   .  .+.++|.+++.+| ++++|+..|++++...
T Consensus       331 g~~~~A~~~~~~al~~~p~~~---~--a~~~~g~a~~~~g-~~~~A~~~~~~al~l~  381 (457)
T 1kt0_A          331 REYTKAVECCDKALGLDSANE---K--GLYRRGEAQLLMN-EFESAKGDFEKVLEVN  381 (457)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHTTC
T ss_pred             cCHHHHHHHHHHHHhcCCccH---H--HHHHHHHHHHHcc-CHHHHHHHHHHHHHhC
Confidence            999999999999999999853   3  4456999999999 9999999999999874

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.28  E-value=4.3e-12  Score=91.37  Aligned_cols=87  Identities=11%  Similarity=0.014  Sum_probs=76.0

Q ss_pred             HcCCHHHHHHHHHHHhcc---cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCC
Q 029491           34 ELGQMSDAEEAAKKGLKI---NKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHS  110 (192)
Q Consensus        34 e~g~~~eAe~~~rrALaL---~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~  110 (192)
                      ..|++++|+..+++|+++   +|+++.++..+|.++..+|++++|+..++++++..|+++   .  .+..+|.++...| 
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~--~~~~l~~~~~~~g-   75 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ---A--LRVFYAMVLYNLG-   75 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---H--HHHHHHHHHHHHT-
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch---H--HHHHHHHHHHHcC-
Confidence            468999999999999999   699999999999999999999999999999999999863   3  4445999999999 


Q ss_pred             CHHHHHHHHHHhhhhh
Q 029491          111 PMRKVLEIYDNHIWKE  126 (192)
Q Consensus       111 ~~deAl~~yd~~i~~~  126 (192)
                      ++++|+..|++++...
T Consensus        76 ~~~~A~~~~~~al~~~   91 (117)
T 3k9i_A           76 RYEQGVELLLKIIAET   91 (117)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            9999999999999885

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.28  E-value=2.2e-11  Score=88.47  Aligned_cols=125  Identities=14%  Similarity=0.104  Sum_probs=105.6

Q ss_pred             CCChHHHHHHHHhhcCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC------HHHHHHHHHHHHh
Q 029491            1 MGRPDLCFDIIHQVLPYNQQE------DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQH   68 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~------~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d------a~A~h~lahvl~~   68 (192)
                      .|++++++..+++++...+..      ..++..+|.++...|++++|+..+++++++.|..      +.++..+|.++..
T Consensus        22 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  101 (164)
T 3ro3_A           22 LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL  101 (164)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            488999999999999876532      2588899999999999999999999999998765      7899999999999


Q ss_pred             cCCHHHHHHHHHHhHhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           69 DCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        69 ~Gr~~eai~~~~~a~~~~p~~~~-~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +|++++|+..+++++...+..+. .........+|.+++..| ++++|+..|++++...
T Consensus       102 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~  159 (164)
T 3ro3_A          102 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG-NHDQAMHFAEKHLEIS  159 (164)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHH
Confidence            99999999999999987655322 112345567999999998 9999999999998764

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.25  E-value=2.8e-12  Score=89.54  Aligned_cols=100  Identities=10%  Similarity=-0.018  Sum_probs=83.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCc-chhhhHH
Q 029491           21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSF-MYTHNWW   99 (192)
Q Consensus        21 ~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~-~~~h~~W   99 (192)
                      ++..+..+|.++...|++++|++.+++|++++|+++.++.++|.++..+|++++|+..+++++.+.|+++.. ......+
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            456788999999999999999999999999999999999999999999999999999999999999986320 0122445


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHH
Q 029491          100 HVALCYLEGHSPMRKVLEIYDN  121 (192)
Q Consensus       100 hlAl~~l~~G~~~deAl~~yd~  121 (192)
                      .+|.++..+| ++++++..|++
T Consensus        83 ~~~~~~~~~~-~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVG-SVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHH-CCCCCSSSSSS
T ss_pred             HHHHHHHHHH-hHhhhHhHHHH
Confidence            6777777777 77777665543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.25  E-value=1.9e-11  Score=98.79  Aligned_cols=124  Identities=13%  Similarity=0.103  Sum_probs=107.8

Q ss_pred             CCChHHHHHHHHhhcCCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------cCCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYN--------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI--------NKHDCWSQHALCH   64 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~--------p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL--------~P~da~A~h~lah   64 (192)
                      +|++++|+..+++++...        |....++..+|.++...|++++|++.+++++.+        +|..+.++..+|.
T Consensus       124 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~  203 (311)
T 3nf1_A          124 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLAS  203 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            589999999999999763        667889999999999999999999999999999        8889999999999


Q ss_pred             HHHhcCCHHHHHHHHHHhHhhccC---------------------------------------------CCCcchhhhHH
Q 029491           65 VLQHDCCFKEAVQFMEECSSTWSS---------------------------------------------CSSFMYTHNWW   99 (192)
Q Consensus        65 vl~~~Gr~~eai~~~~~a~~~~p~---------------------------------------------~~~~~~~h~~W   99 (192)
                      ++..+|++++|+..+++++...|.                                             ..+ .....+.
T Consensus       204 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~  282 (311)
T 3nf1_A          204 CYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSP-TVTTTLK  282 (311)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CH-HHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc-hHHHHHH
Confidence            999999999999999999976443                                             111 1234566


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491          100 HVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus       100 hlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .+|.++...| ++++|+..|++++...
T Consensus       283 ~la~~~~~~g-~~~~A~~~~~~al~l~  308 (311)
T 3nf1_A          283 NLGALYRRQG-KFEAAETLEEAAMRSR  308 (311)
T ss_dssp             HHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCC-CHHHHHHHHHHHHHHh
Confidence            7999999999 9999999999998874

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.24  E-value=2.4e-11  Score=105.61  Aligned_cols=111  Identities=7%  Similarity=-0.056  Sum_probs=99.2

Q ss_pred             CCChHHHHHHHHhhcC----------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLP----------------YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCH   64 (192)
Q Consensus         1 ~G~~~~al~~~~ral~----------------~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lah   64 (192)
                      .|++++|+..+++++.                .+|.++.++.++|.++...|++++|++.+++||+++|+++.++..+|.
T Consensus       236 ~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~  315 (370)
T 1ihg_A          236 SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQ  315 (370)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            4889999999999998                788889999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHH
Q 029491           65 VLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLE  117 (192)
Q Consensus        65 vl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~  117 (192)
                      ++..+|++++|+..+++++++.|+++   .  .+..++.++...| +++++.+
T Consensus       316 ~~~~~g~~~eA~~~l~~Al~l~P~~~---~--~~~~l~~~~~~~~-~~~~a~k  362 (370)
T 1ihg_A          316 GWQGLKEYDQALADLKKAQEIAPEDK---A--IQAELLKVKQKIK-AQKDKEK  362 (370)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCH---H--HHHHHHHHHHHHH-HHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCH---H--HHHHHHHHHHHHH-HHHHHHH
Confidence            99999999999999999999999853   2  3345777777776 6776653

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.24  E-value=1.1e-11  Score=105.99  Aligned_cols=120  Identities=9%  Similarity=-0.021  Sum_probs=81.0

Q ss_pred             CCChHHHHHHHHhhcCCCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQED-----------------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALC   63 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~-----------------~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~la   63 (192)
                      .|++.+|+..+++++...|++.                 .++.++|.++...|+|++|+..+++||+++|+++.++.++|
T Consensus       192 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg  271 (338)
T 2if4_A          192 EEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRG  271 (338)
T ss_dssp             SSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4889999999999999999887                 38999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHH-HhCCCCHHHHHHHHHHhhhhh
Q 029491           64 HVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCY-LEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        64 hvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~-l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .++..+|++++|+..+++++.+.|+++.   .+.  .++.+. ...+ ..+++...|.+.+...
T Consensus       272 ~a~~~~g~~~~A~~~l~~al~l~p~~~~---a~~--~L~~l~~~~~~-~~~~a~~~~~~~l~~~  329 (338)
T 2if4_A          272 KAKAELGQMDSARDDFRKAQKYAPDDKA---IRR--ELRALAEQEKA-LYQKQKEMYKGIFKGK  329 (338)
T ss_dssp             HHHHTTTCHHHHHHHHHHTTC-------------------------------------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCCHH---HHH--HHHHHHHHHHH-HHHHHHHHHHHhhCCC
Confidence            9999999999999999999999998653   233  355553 3445 7889999999888764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.23  E-value=5.9e-11  Score=95.81  Aligned_cols=122  Identities=16%  Similarity=0.153  Sum_probs=108.0

Q ss_pred             CCChHHHHHHHHhhcC--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------cCCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLP--------YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI--------NKHDCWSQHALCH   64 (192)
Q Consensus         1 ~G~~~~al~~~~ral~--------~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL--------~P~da~A~h~lah   64 (192)
                      .|++++|+..+++++.        ..|..+.++..+|.++...|++++|+..+++++.+        +|..+.++..+|.
T Consensus        40 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~  119 (311)
T 3nf1_A           40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAV  119 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            4899999999999998        46778899999999999999999999999999998        5778899999999


Q ss_pred             HHHhcCCHHHHHHHHHHhHhhc-----cCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           65 VLQHDCCFKEAVQFMEECSSTW-----SSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        65 vl~~~Gr~~eai~~~~~a~~~~-----p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      ++..+|++++|+..+++++...     ++.+.  ....+..+|.++...| ++++|+..|++.+..
T Consensus       120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~  182 (311)
T 3nf1_A          120 LYGKRGKYKEAEPLCKRALEIREKVLGKDHPD--VAKQLNNLALLCQNQG-KYEEVEYYYQRALEI  182 (311)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHH
T ss_pred             HHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence            9999999999999999999886     33222  3445567999999998 999999999999886

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.23  E-value=3.8e-10  Score=86.26  Aligned_cols=125  Identities=11%  Similarity=0.007  Sum_probs=102.3

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc------ccCCCHHHHHHHHHHHHhcCCHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK------INKHDCWSQHALCHVLQHDCCFKE   74 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALa------L~P~da~A~h~lahvl~~~Gr~~e   74 (192)
                      .|++.+|...++.+....+..+.++..+|.++...|++++|+..++++++      ..|..+.++.++|.++..+|++++
T Consensus         5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~   84 (203)
T 3gw4_A            5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA   84 (203)
T ss_dssp             --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence            37888998844444333337789999999999999999999999999999      677889999999999999999999


Q ss_pred             HHHHHHHhHhhccCCCCc--chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           75 AVQFMEECSSTWSSCSSF--MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        75 ai~~~~~a~~~~p~~~~~--~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      |+..++++++.....+..  .......++|.++...| ++++|+..+++.+...
T Consensus        85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~  137 (203)
T 3gw4_A           85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFG-DLAGARQEYEKSLVYA  137 (203)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHH
Confidence            999999999884433210  13445667999999999 9999999999998753

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.22  E-value=6.2e-10  Score=78.18  Aligned_cols=98  Identities=13%  Similarity=0.219  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHH
Q 029491           23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVA  102 (192)
Q Consensus        23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlA  102 (192)
                      .++..+|..+...|++++|+..+++++.++|+++.++..+|.++...|++++|+..+++++...|..+   .  .+..+|
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~--~~~~l~   76 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA---E--AWYNLG   76 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---H--HHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch---H--HHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999988742   2  445699


Q ss_pred             HHHHhCCCCHHHHHHHHHHhhhhh
Q 029491          103 LCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus       103 l~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .++...| ++++|+..+++.+...
T Consensus        77 ~~~~~~~-~~~~A~~~~~~~~~~~   99 (136)
T 2fo7_A           77 NAYYKQG-DYDEAIEYYQKALELD   99 (136)
T ss_dssp             HHHHTTT-CHHHHHHHHHHHHHHC
T ss_pred             HHHHHhc-CHHHHHHHHHHHHHhC
Confidence            9999998 9999999999998874

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.21  E-value=1.4e-11  Score=96.53  Aligned_cols=90  Identities=14%  Similarity=0.111  Sum_probs=80.6

Q ss_pred             HHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHhHhhccCCCCcchhhhHHHH
Q 029491           32 LLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF----------KEAVQFMEECSSTWSSCSSFMYTHNWWHV  101 (192)
Q Consensus        32 L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~----------~eai~~~~~a~~~~p~~~~~~~~h~~Whl  101 (192)
                      ....++|++|++.+++|++++|+++.++.++|.++..+|++          ++||..+++++.++|+..     ..+|++
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~-----~A~~~L   86 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD-----EAVWCI   86 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH-----HHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH-----HHHHHH
Confidence            45678899999999999999999999999999999999986          599999999999999953     367889


Q ss_pred             HHHHHhCC----------CCHHHHHHHHHHhhhhh
Q 029491          102 ALCYLEGH----------SPMRKVLEIYDNHIWKE  126 (192)
Q Consensus       102 Al~~l~~G----------~~~deAl~~yd~~i~~~  126 (192)
                      |.+|..+|          +++++|+..|++++...
T Consensus        87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~  121 (158)
T 1zu2_A           87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ  121 (158)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence            99998763          27999999999999985

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.21  E-value=7.2e-11  Score=83.25  Aligned_cols=74  Identities=11%  Similarity=-0.036  Sum_probs=68.1

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCC
Q 029491           17 YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS   90 (192)
Q Consensus        17 ~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~   90 (192)
                      .+|+++.++..+|.++...|++++|+..++++++++|+++.++..+|.++..+|++++|+..+++++++.|..+
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~   75 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG   75 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999987643

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.20  E-value=1.6e-10  Score=99.76  Aligned_cols=119  Identities=10%  Similarity=-0.007  Sum_probs=85.9

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhc------------
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHD------------   69 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~------------   69 (192)
                      |+..++...+++++..+|+++.++..+|.++...|++++|+..+++|++++|+++.+++.+|.++..+            
T Consensus       227 ~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~  306 (472)
T 4g1t_A          227 EEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM  306 (472)
T ss_dssp             ---CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             hHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            45567777777777777777777777777777777777777777777777777777777777765433            


Q ss_pred             -------CCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           70 -------CCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        70 -------Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                             +..++|+..+++++...|....     .+..+|.++...| ++++|+..|++++...
T Consensus       307 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~lg~~~~~~~-~~~~A~~~~~kaL~~~  364 (472)
T 4g1t_A          307 YGKRKLLELIGHAVAHLKKADEANDNLFR-----VCSILASLHALAD-QYEEAEYYFQKEFSKE  364 (472)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHCTTTCC-----CHHHHHHHHHHTT-CHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHhhHHHHHHHHHHHhhcCCchhh-----hhhhHHHHHHHhc-cHHHHHHHHHHHHhcC
Confidence                   3356677777777777766432     3345888888998 8999999999988764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.20  E-value=1.5e-10  Score=98.44  Aligned_cols=124  Identities=9%  Similarity=0.061  Sum_probs=102.7

Q ss_pred             CCChHHHHHHHHhhcCC---CC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccC-------CCHHHHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPY---NQ---QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINK-------HDCWSQHALCHVLQ   67 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~---~p---~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P-------~da~A~h~lahvl~   67 (192)
                      .|++++|+..+++++..   .|   ..+.++..+|.++...|++++|+..+++|+++.+       ..+.++.++|.++.
T Consensus       116 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~  195 (383)
T 3ulq_A          116 QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL  195 (383)
T ss_dssp             TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence            48899999999999886   23   3568899999999999999999999999999844       44568999999999


Q ss_pred             hcCCHHHHHHHHHHhHhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           68 HDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        68 ~~Gr~~eai~~~~~a~~~~p~~~~-~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      .+|++++|+..+++++++.+..+. ........++|.++...| ++++|+..|++++..
T Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~  253 (383)
T 3ulq_A          196 DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS-QYEDAIPYFKRAIAV  253 (383)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Confidence            999999999999999988766432 112335557999999998 899999999999884

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.19  E-value=1e-10  Score=82.58  Aligned_cols=88  Identities=10%  Similarity=0.148  Sum_probs=84.8

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC-------HHHHHHHHHHHHhcCCHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD-------CWSQHALCHVLQHDCCFK   73 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d-------a~A~h~lahvl~~~Gr~~   73 (192)
                      .|++.+|+..+.+++..+|+++.++..+|.++...|++++|+..+++++.++|++       +.++..+|.++...|+++
T Consensus        17 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~   96 (131)
T 1elr_A           17 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYK   96 (131)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHH
Confidence            4899999999999999999999999999999999999999999999999999988       999999999999999999


Q ss_pred             HHHHHHHHhHhhccC
Q 029491           74 EAVQFMEECSSTWSS   88 (192)
Q Consensus        74 eai~~~~~a~~~~p~   88 (192)
                      +|+..+++++...|+
T Consensus        97 ~A~~~~~~~~~~~~~  111 (131)
T 1elr_A           97 DAIHFYNKSLAEHRT  111 (131)
T ss_dssp             HHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHhCCC
Confidence            999999999999774

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.19  E-value=7.5e-11  Score=98.55  Aligned_cols=123  Identities=9%  Similarity=0.021  Sum_probs=103.7

Q ss_pred             CCChHHHHHHHHhhcCCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC------HHHHHHHHHHHHh
Q 029491            1 MGRPDLCFDIIHQVLPYNQQ------EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQH   68 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~------~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d------a~A~h~lahvl~~   68 (192)
                      +|++++|+..+++++.+.+.      .+.++..+|.++.. |++++|++.+++|+++.|.+      +.++.++|.++..
T Consensus        89 ~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~  167 (307)
T 2ifu_A           89 LQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR  167 (307)
T ss_dssp             TTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence            48999999999999987432      24788899999988 99999999999999999875      6889999999999


Q ss_pred             cCCHHHHHHHHHHhHhhccCCCCc-chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           69 DCCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        69 ~Gr~~eai~~~~~a~~~~p~~~~~-~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +|++++|+..+++++.+.|..+.. .....+..++++++..| ++++|+..|++.+ ..
T Consensus       168 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al-~~  224 (307)
T 2ifu_A          168 QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRA-DYVAAQKCVRESY-SI  224 (307)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHT-TS
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHh-CC
Confidence            999999999999999998875421 01224456888999998 9999999999999 53

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.19  E-value=1.4e-10  Score=78.09  Aligned_cols=85  Identities=11%  Similarity=0.085  Sum_probs=74.7

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHH
Q 029491           20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWW   99 (192)
Q Consensus        20 ~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~W   99 (192)
                      .++.++..+|..+...|++++|+..++++++++|+++.++..+|.++..+|++++|+..+++++...|..+   ..+  .
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~--~   81 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---EAK--Q   81 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHH--H
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH---HHH--H
Confidence            46788999999999999999999999999999999999999999999999999999999999999998853   333  3


Q ss_pred             HHHHHHHhCC
Q 029491          100 HVALCYLEGH  109 (192)
Q Consensus       100 hlAl~~l~~G  109 (192)
                      .+|.++...|
T Consensus        82 ~l~~~~~~~g   91 (91)
T 1na3_A           82 NLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhcC
Confidence            4777665543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.19  E-value=1e-10  Score=88.92  Aligned_cols=90  Identities=11%  Similarity=0.095  Sum_probs=86.6

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHH-HHHcCCH--HHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFS-LLELGQM--SDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ   77 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~-L~e~g~~--~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~   77 (192)
                      +|++++|+..+++++..+|+++.++..+|.+ +...|++  ++|+..++++++++|+++.++..+|.++..+|++++|+.
T Consensus        57 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  136 (177)
T 2e2e_A           57 QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIE  136 (177)
T ss_dssp             TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHH
Confidence            4899999999999999999999999999999 7799999  999999999999999999999999999999999999999


Q ss_pred             HHHHhHhhccCCC
Q 029491           78 FMEECSSTWSSCS   90 (192)
Q Consensus        78 ~~~~a~~~~p~~~   90 (192)
                      .+++++...|.++
T Consensus       137 ~~~~al~~~p~~~  149 (177)
T 2e2e_A          137 LWQKVMDLNSPRI  149 (177)
T ss_dssp             HHHHHHHTCCTTS
T ss_pred             HHHHHHhhCCCCc
Confidence            9999999999864

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.18  E-value=1.2e-10  Score=99.17  Aligned_cols=125  Identities=10%  Similarity=0.124  Sum_probs=105.4

Q ss_pred             CCChHHHHHHHHhhcCCCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH------HHHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQ-------QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC------WSQHALCHVLQ   67 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p-------~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da------~A~h~lahvl~   67 (192)
                      +|++.+|+..+.+++...+       ..+.++.++|.++...|++++|+..+++|+.+.|...      .+++++|.++.
T Consensus       156 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  235 (383)
T 3ulq_A          156 MKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN  235 (383)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            5899999999999998743       3357899999999999999999999999999977654      59999999999


Q ss_pred             hcCCHHHHHHHHHHhHhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           68 HDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        68 ~~Gr~~eai~~~~~a~~~~p~~~~-~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .+|++++|+..+++++.+.+.... ........++|.+++..| ++++|...|++++...
T Consensus       236 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~  294 (383)
T 3ulq_A          236 SQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLG-KIDKAHEYHSKGMAYS  294 (383)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
Confidence            999999999999999985433211 013445567999999999 9999999999999874

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.17  E-value=1.9e-10  Score=89.15  Aligned_cols=89  Identities=8%  Similarity=-0.041  Sum_probs=85.5

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH----------------HHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC----------------WSQHALCH   64 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da----------------~A~h~lah   64 (192)
                      +|++++|+..+++++..+|+++.++..+|.++...|++++|++.+++++.+.|++.                .++.++|.
T Consensus        50 ~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (213)
T 1hh8_A           50 LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF  129 (213)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999888877                99999999


Q ss_pred             HHHhcCCHHHHHHHHHHhHhhccCC
Q 029491           65 VLQHDCCFKEAVQFMEECSSTWSSC   89 (192)
Q Consensus        65 vl~~~Gr~~eai~~~~~a~~~~p~~   89 (192)
                      ++..+|++++|+..+++++...|..
T Consensus       130 ~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A          130 MYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHccCHHHHHHHHHHHHHcCccc
Confidence            9999999999999999999998873

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.16  E-value=1.3e-10  Score=98.48  Aligned_cols=124  Identities=15%  Similarity=0.163  Sum_probs=108.4

Q ss_pred             CCChHHHHHHHHhhcCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcc------cCCCHHHHHHHHHHHHhcC
Q 029491            1 MGRPDLCFDIIHQVLPYNQQED----FIFGILAFSLLELGQMSDAEEAAKKGLKI------NKHDCWSQHALCHVLQHDC   70 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~----~~~~~laf~L~e~g~~~eAe~~~rrALaL------~P~da~A~h~lahvl~~~G   70 (192)
                      .|++++|+..+++++...|+++    .++..+|.++...|++++|+..+++++++      +|..+.++..+|.++..+|
T Consensus        61 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g  140 (411)
T 4a1s_A           61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG  140 (411)
T ss_dssp             TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence            4899999999999999999987    68899999999999999999999999999      7999999999999999999


Q ss_pred             CHHHHHHHHHHhHhhccCCCC-cchhhhHHHHHHHHHhCCCC-----------------HHHHHHHHHHhhhh
Q 029491           71 CFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSP-----------------MRKVLEIYDNHIWK  125 (192)
Q Consensus        71 r~~eai~~~~~a~~~~p~~~~-~~~~h~~WhlAl~~l~~G~~-----------------~deAl~~yd~~i~~  125 (192)
                      ++++|+..+++++...+.... ......+..+|.++...| +                 +++|+..|++++..
T Consensus       141 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~  212 (411)
T 4a1s_A          141 RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG-KHLGQRNPGKFGDDVKEALTRAVEFYQENLKL  212 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC-cccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence            999999999999988543211 012335567999999998 9                 99999999998775

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.15  E-value=1.3e-09  Score=89.92  Aligned_cols=125  Identities=10%  Similarity=0.060  Sum_probs=100.8

Q ss_pred             CCChHHHHHHHHhhcCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHh---cccCCCH----HHHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQE------DFIFGILAFSLLELGQMSDAEEAAKKGL---KINKHDC----WSQHALCHVLQ   67 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~------~~~~~~laf~L~e~g~~~eAe~~~rrAL---aL~P~da----~A~h~lahvl~   67 (192)
                      .|++++|+..+.+++...+..      ..++..+|.++...|++++|+..+++|+   ...|++.    .++.++|.++.
T Consensus       128 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~  207 (293)
T 2qfc_A          128 KVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY  207 (293)
T ss_dssp             SSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH
Confidence            378899999999998765432      5688899999999999999999999999   5566643    68899999999


Q ss_pred             hcCCHHHHHHHHHHhHhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHH-HHHHHHhhhhh
Q 029491           68 HDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKV-LEIYDNHIWKE  126 (192)
Q Consensus        68 ~~Gr~~eai~~~~~a~~~~p~~~~-~~~~h~~WhlAl~~l~~G~~~deA-l~~yd~~i~~~  126 (192)
                      .+|++++|+..+++++.+.+.... ...+..+.++|.++..+| ++++| ...|++++...
T Consensus       208 ~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          208 LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE-YEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHH
Confidence            999999999999999987654221 123445667999999998 89999 77788887664

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.14  E-value=3.2e-10  Score=96.34  Aligned_cols=122  Identities=10%  Similarity=-0.029  Sum_probs=104.8

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD--CWSQHALCHVLQHDCCFKEAVQF   78 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d--a~A~h~lahvl~~~Gr~~eai~~   78 (192)
                      .|++++|...+++++...|++. ++.++|.++.+.|++++|+..+++++...++.  ..++..+|.++..+|+++||+.+
T Consensus       115 ~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~  193 (282)
T 4f3v_A          115 QGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERR  193 (282)
T ss_dssp             HTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            3899999999999999999999 99999999999999999999999998864332  45899999999999999999999


Q ss_pred             HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ++++.... ..|. ......+.+|+++..+| +.++|..+|++.+...
T Consensus       194 l~~a~~g~-~~P~-~~~da~~~~glaL~~lG-r~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          194 LTEANDSP-AGEA-CARAIAWYLAMARRSQG-NESAAVALLEWLQTTH  238 (282)
T ss_dssp             HHHHHTST-TTTT-THHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHS
T ss_pred             HHHHhcCC-CCcc-ccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC
Confidence            99998543 2122 12345567999999999 9999999999999985

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.13  E-value=2.7e-10  Score=91.80  Aligned_cols=124  Identities=11%  Similarity=0.139  Sum_probs=108.8

Q ss_pred             CCChHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------cCCCHHHHHHHHHHHHhcC
Q 029491            1 MGRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGLKI------NKHDCWSQHALCHVLQHDC   70 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~----~~~~~~laf~L~e~g~~~eAe~~~rrALaL------~P~da~A~h~lahvl~~~G   70 (192)
                      .|++++|+..+++++...|++    +.++..+|.++...|++++|++.+++++.+      .|..+.++..+|.++..+|
T Consensus        18 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g   97 (338)
T 3ro2_A           18 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG   97 (338)
T ss_dssp             TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc
Confidence            489999999999999999998    477889999999999999999999999999      6778899999999999999


Q ss_pred             CHHHHHHHHHHhHhhccCCCCc-chhhhHHHHHHHHHhCCCC--------------------HHHHHHHHHHhhhh
Q 029491           71 CFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSP--------------------MRKVLEIYDNHIWK  125 (192)
Q Consensus        71 r~~eai~~~~~a~~~~p~~~~~-~~~h~~WhlAl~~l~~G~~--------------------~deAl~~yd~~i~~  125 (192)
                      ++++|+..++++++..|..+.. .....+..+|.++...| +                    +++|+..|++.+..
T Consensus        98 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~  172 (338)
T 3ro2_A           98 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL  172 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC-cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999887764321 12335567999999998 9                    99999999988765

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.13  E-value=2.7e-10  Score=95.96  Aligned_cols=123  Identities=12%  Similarity=0.020  Sum_probs=89.6

Q ss_pred             CChHHHHHHHHhhcCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccc--------CCCHHHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQE------DFIFGILAFSLLELGQMSDAEEAAKKGLKIN--------KHDCWSQHALCHVLQ   67 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~------~~~~~~laf~L~e~g~~~eAe~~~rrALaL~--------P~da~A~h~lahvl~   67 (192)
                      |++++++..+++++...|..      ..++.++|.++...|++++|++.+++++++.        |..+.++.++|.++.
T Consensus        67 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  146 (373)
T 1hz4_A           67 GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW  146 (373)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH
Confidence            67778888888877765432      2446677888888888888888888888876        345567777888888


Q ss_pred             hcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           68 HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        68 ~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      .+|++++|+..++++++..+..........+..+|..++..| ++++|...+++.+..
T Consensus       147 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~l~~a~~~  203 (373)
T 1hz4_A          147 AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARG-DLDNARSQLNRLENL  203 (373)
T ss_dssp             HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence            888888888888888887765432111234456788888888 888888888888765

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.13  E-value=5.8e-10  Score=92.06  Aligned_cols=125  Identities=12%  Similarity=0.126  Sum_probs=101.1

Q ss_pred             CChHHHHHHHHhhcCCCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHhc-------ccCCCHHHHHHHHHHHHh
Q 029491            2 GRPDLCFDIIHQVLPYNQQ--E----DFIFGILAFSLLELGQMSDAEEAAKKGLK-------INKHDCWSQHALCHVLQH   68 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~--~----~~~~~~laf~L~e~g~~~eAe~~~rrALa-------L~P~da~A~h~lahvl~~   68 (192)
                      |++++|+..+++++...+.  +    ..++.++|.++.+.|++++|+..+++|+.       ..|..+.++.++|.++..
T Consensus       129 ~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~  208 (293)
T 3u3w_A          129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL  208 (293)
T ss_dssp             SCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence            6789999999999985432  2    34789999999999999999999999994       445556788999999999


Q ss_pred             cCCHHHHHHHHHHhHhhccCCCCc-chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           69 DCCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        69 ~Gr~~eai~~~~~a~~~~p~~~~~-~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +|++++|+.++++++.+.+..... ..+..+.++|.++..+|.++++|+..|++++...
T Consensus       209 ~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            999999999999999887664321 1245667799999999833699999999988764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.13  E-value=1.4e-09  Score=91.58  Aligned_cols=125  Identities=12%  Similarity=-0.014  Sum_probs=103.8

Q ss_pred             CCChHHHHHHHHhhcCCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH------HHHHHHHHHHHhc
Q 029491            1 MGRPDLCFDIIHQVLPYNQQED-----FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC------WSQHALCHVLQHD   69 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~-----~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da------~A~h~lahvl~~~   69 (192)
                      .|++++++..+++++...|.+.     .++.++|.++...|++++|++.+++|+++.|...      +++.++|.++..+
T Consensus        27 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  106 (373)
T 1hz4_A           27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ  106 (373)
T ss_dssp             TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence            4899999999999999877542     3678899999999999999999999999987653      4578999999999


Q ss_pred             CCHHHHHHHHHHhHhhccCCCC---cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           70 CCFKEAVQFMEECSSTWSSCSS---FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        70 Gr~~eai~~~~~a~~~~p~~~~---~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      |++++|+..+++++...+..+.   ........++|..+...| ++++|...|++.+...
T Consensus       107 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~  165 (373)
T 1hz4_A          107 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA-RLDEAEASARSGIEVL  165 (373)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHh
Confidence            9999999999999988754321   012234445899999999 9999999999998774

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.13  E-value=1.1e-10  Score=98.78  Aligned_cols=125  Identities=15%  Similarity=0.103  Sum_probs=97.6

Q ss_pred             CCChHHHHHHHHhhcCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC------HHHHHHHHHHHHh
Q 029491            1 MGRPDLCFDIIHQVLPYNQQED------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQH   68 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~------~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d------a~A~h~lahvl~~   68 (192)
                      +|++++|+..+++++...|...      .++..+|.++...|++++|+..+++++.+.|..      +.++..+|.++..
T Consensus       236 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  315 (411)
T 4a1s_A          236 LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTL  315 (411)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            4788888888888888766433      377888888888888888888888888888865      7788888888888


Q ss_pred             cCCHHHHHHHHHHhHhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           69 DCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        69 ~Gr~~eai~~~~~a~~~~p~~~~-~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +|++++|+..+++++...+..+. ......++.+|.++...| ++++|+..|++++...
T Consensus       316 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~  373 (411)
T 4a1s_A          316 LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIG-GHERALKYAEQHLQLA  373 (411)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHH
Confidence            88888888888888877665321 012335667888888888 8888888888888773

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.12  E-value=3.6e-10  Score=97.56  Aligned_cols=119  Identities=13%  Similarity=0.078  Sum_probs=101.1

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh----cCCHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFS---LLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCFKE   74 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~---L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~----~Gr~~e   74 (192)
                      +++++|+..+++++..+|+++.++..++.+   +...+++++|.+.+++|++++|+++.++..+|.++..    .|+.++
T Consensus       152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~  231 (472)
T 4g1t_A          152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE  231 (472)
T ss_dssp             THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHH
Confidence            467899999999999999999988887766   5567888999999999999999999999999987765    467889


Q ss_pred             HHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           75 AVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        75 ai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      |+..+++++...|..+   .  .+.++|.++...| ++++|+..|++++...
T Consensus       232 a~~~~~~al~~~~~~~---~--~~~~lg~~~~~~~-~~~~A~~~~~~al~~~  277 (472)
T 4g1t_A          232 GEKLVEEALEKAPGVT---D--VLRSAAKFYRRKD-EPDKAIELLKKALEYI  277 (472)
T ss_dssp             HHHHHHHHHHHCSSCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhCccHH---H--HHHHHHHHHHHcC-chHHHHHHHHHHHHhC
Confidence            9999999999998853   2  3446999999999 9999999999999874

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.12  E-value=1.8e-10  Score=96.36  Aligned_cols=125  Identities=14%  Similarity=0.084  Sum_probs=107.5

Q ss_pred             CCChHHHHHHHHhhcCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC------HHHHHHHHHHHHh
Q 029491            1 MGRPDLCFDIIHQVLPYNQQED------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQH   68 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~------~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d------a~A~h~lahvl~~   68 (192)
                      +|++++|+..+++++...|...      .++..+|.++...|++++|+..+++++.+.|..      +.++..+|.++..
T Consensus       200 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  279 (406)
T 3sf4_A          200 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL  279 (406)
T ss_dssp             HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH
Confidence            3889999999999998765443      488999999999999999999999999999887      8899999999999


Q ss_pred             cCCHHHHHHHHHHhHhhccCCCCc-chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           69 DCCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        69 ~Gr~~eai~~~~~a~~~~p~~~~~-~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +|++++|+..+++++...+..+.. .....+..+|.++...| ++++|+..|++++...
T Consensus       280 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~  337 (406)
T 3sf4_A          280 LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALG-NHDQAMHFAEKHLEIS  337 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred             hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHH
Confidence            999999999999999887764321 12335667999999999 9999999999998774

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.12  E-value=1.8e-11  Score=85.36  Aligned_cols=83  Identities=17%  Similarity=0.144  Sum_probs=77.2

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC------HHHHHHHHHHHHhcCCHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQHDCCFKE   74 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d------a~A~h~lahvl~~~Gr~~e   74 (192)
                      .|++++|+..+++++..+|+++.++.++|.++...|++++|++.++++++++|++      +.++..+|.++...|++++
T Consensus        17 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (111)
T 2l6j_A           17 QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQI   96 (111)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhh
Confidence            4899999999999999999999999999999999999999999999999999999      9999999999999999888


Q ss_pred             HHHHHHHhH
Q 029491           75 AVQFMEECS   83 (192)
Q Consensus        75 ai~~~~~a~   83 (192)
                      ++..+++..
T Consensus        97 a~~~~~~~~  105 (111)
T 2l6j_A           97 PVVEVDELP  105 (111)
T ss_dssp             CSSSSSSCS
T ss_pred             hHhHHHHhH
Confidence            877665543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.12  E-value=2.1e-09  Score=86.80  Aligned_cols=112  Identities=11%  Similarity=0.009  Sum_probs=75.1

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh----cCCHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE----LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCFK   73 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e----~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~----~Gr~~   73 (192)
                      |++++|+..+++++.  |+++.++..+|..+..    .|++++|+..+++|++++  ++.++..+|.++..    .|+++
T Consensus        20 ~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~   95 (273)
T 1ouv_A           20 KDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTN   95 (273)
T ss_dssp             TCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             CCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHH
Confidence            566777777777766  6666677777777777    777777777777777664  67777777777777    77777


Q ss_pred             HHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHh----CCCCHHHHHHHHHHhhhh
Q 029491           74 EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        74 eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~----~G~~~deAl~~yd~~i~~  125 (192)
                      +|+.++++++...  +   ..  .+..+|.++..    .| ++++|+..|++++..
T Consensus        96 ~A~~~~~~a~~~~--~---~~--a~~~lg~~~~~~~~~~~-~~~~A~~~~~~a~~~  143 (273)
T 1ouv_A           96 KALQYYSKACDLK--Y---AE--GCASLGGIYHDGKVVTR-DFKKAVEYFTKACDL  143 (273)
T ss_dssp             HHHHHHHHHHHTT--C---HH--HHHHHHHHHHHCSSSCC-CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcC--C---cc--HHHHHHHHHHcCCCccc-CHHHHHHHHHHHHhc
Confidence            7777777777652  1   12  23346666666    66 677777777776654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.11  E-value=1.9e-10  Score=92.75  Aligned_cols=123  Identities=14%  Similarity=0.086  Sum_probs=92.8

Q ss_pred             CChHHHHHHHHhhcCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC------HHHHHHHHHHHHhc
Q 029491            2 GRPDLCFDIIHQVLPYNQQE------DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQHD   69 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~------~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d------a~A~h~lahvl~~~   69 (192)
                      |++++|+..+++++...|..      +.++..+|.++...|++++|+..+++++.+.|..      +.++..+|.++..+
T Consensus       197 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  276 (338)
T 3ro2_A          197 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL  276 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Confidence            67788888888887765432      3477888888888888888888888888887776      77888888888888


Q ss_pred             CCHHHHHHHHHHhHhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           70 CCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        70 Gr~~eai~~~~~a~~~~p~~~~-~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      |++++|+..+++++...+..+. ......++.+|.++...| ++++|...|++++..
T Consensus       277 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          277 QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG-NHDQAMHFAEKHLEI  332 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHH
Confidence            8888888888888877655321 012335566888888887 788888888888765

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.10  E-value=2e-09  Score=88.85  Aligned_cols=124  Identities=10%  Similarity=0.036  Sum_probs=102.1

Q ss_pred             CCChHHHHHHHHhhcCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC------HHHHHHHHHHHHh
Q 029491            1 MGRPDLCFDIIHQVLPYNQQED------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQH   68 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~------~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d------a~A~h~lahvl~~   68 (192)
                      .|++++|+..+.+++...|...      ..+..+|..+...|++++|+..+++|+.+.+..      +.++.++|.++..
T Consensus        88 ~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  167 (293)
T 2qfc_A           88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE  167 (293)
T ss_dssp             TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence            4789999999999998777543      334567778888999999999999999987655      6699999999999


Q ss_pred             cCCHHHHHHHHHHhHhh---ccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           69 DCCFKEAVQFMEECSST---WSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        69 ~Gr~~eai~~~~~a~~~---~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +|++++|+..+++++..   .|..+. .......++|.++...| +|++|+..|++++...
T Consensus       168 ~~~~~~A~~~~~kal~~~~~~~~~~~-~~~~~~~nlg~~y~~~~-~y~~Al~~~~kal~~~  226 (293)
T 2qfc_A          168 NGYLKKGIDLFEQILKQLEALHDNEE-FDVKVRYNHAKALYLDS-RYEESLYQVNKAIEIS  226 (293)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSCCCHH-HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCcccc-chHHHHHhHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            99999999999999944   443221 12246678999999999 9999999999998764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.10  E-value=3.5e-10  Score=94.47  Aligned_cols=124  Identities=8%  Similarity=0.032  Sum_probs=104.4

Q ss_pred             CCChHHHHHHHHhhcCCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC------CHHHHHHHHHHHHh
Q 029491            1 MGRPDLCFDIIHQVLPYNQQ------EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH------DCWSQHALCHVLQH   68 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~------~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~------da~A~h~lahvl~~   68 (192)
                      .|++++|+..+.+++...+.      -+.++..+|.++...|++++|+..+++|+++.+.      -+.++.++|.++..
T Consensus        49 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~  128 (307)
T 2ifu_A           49 AKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP  128 (307)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc
Confidence            48899999999999987642      2568889999999999999999999999999643      25788999999999


Q ss_pred             cCCHHHHHHHHHHhHhhccCCCCc-chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           69 DCCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        69 ~Gr~~eai~~~~~a~~~~p~~~~~-~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                       |++++|+..+++++.+.|..... .......++|.++..+| +|++|+..|++++...
T Consensus       129 -g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~  185 (307)
T 2ifu_A          129 -LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ-KFDEAAASLQKEKSMY  185 (307)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHH
Confidence             99999999999999998875321 11234557999999999 9999999999999864

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.09  E-value=3.7e-10  Score=80.38  Aligned_cols=82  Identities=9%  Similarity=0.051  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHH
Q 029491           39 SDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEI  118 (192)
Q Consensus        39 ~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~  118 (192)
                      ++|++.++++++++|+++.++..+|.++..+|++++|+..+++++...|...   .  .+..+|.++...| ++++|+..
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~--~~~~la~~~~~~g-~~~~A~~~   75 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS---V--AWKWLGKTLQGQG-DRAGARQA   75 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---H--HHHHHHHHHHHHT-CHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH---H--HHHHHHHHHHHcC-CHHHHHHH
Confidence            3588999999999999999999999999999999999999999999998853   2  4556999999999 99999999


Q ss_pred             HHHhhhhh
Q 029491          119 YDNHIWKE  126 (192)
Q Consensus       119 yd~~i~~~  126 (192)
                      |++++...
T Consensus        76 ~~~al~~~   83 (115)
T 2kat_A           76 WESGLAAA   83 (115)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99998864

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.08  E-value=4.2e-10  Score=94.12  Aligned_cols=125  Identities=11%  Similarity=0.125  Sum_probs=109.2

Q ss_pred             CCChHHHHHHHHhhcCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcc------cCCCHHHHHHHHHHHHhcC
Q 029491            1 MGRPDLCFDIIHQVLPYNQQED----FIFGILAFSLLELGQMSDAEEAAKKGLKI------NKHDCWSQHALCHVLQHDC   70 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~----~~~~~laf~L~e~g~~~eAe~~~rrALaL------~P~da~A~h~lahvl~~~G   70 (192)
                      .|++++|+..+++++...|+++    .++..+|.++...|++++|+..+++|+.+      .|..+.++..+|.++..+|
T Consensus        22 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  101 (406)
T 3sf4_A           22 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG  101 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC
Confidence            4899999999999999999884    67889999999999999999999999998      6777899999999999999


Q ss_pred             CHHHHHHHHHHhHhhccCCCC-cchhhhHHHHHHHHHhCCCC--------------------HHHHHHHHHHhhhhh
Q 029491           71 CFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSP--------------------MRKVLEIYDNHIWKE  126 (192)
Q Consensus        71 r~~eai~~~~~a~~~~p~~~~-~~~~h~~WhlAl~~l~~G~~--------------------~deAl~~yd~~i~~~  126 (192)
                      ++++|+..+++++...|..+. ......+..+|.++...| +                    +++|+..|++++...
T Consensus       102 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~  177 (406)
T 3sf4_A          102 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLV  177 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC-CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988776432 012335667999999998 9                    999999999988763

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.08  E-value=3.7e-09  Score=94.12  Aligned_cols=115  Identities=10%  Similarity=0.046  Sum_probs=94.3

Q ss_pred             HHHHHHHhhcC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 029491            6 LCFDIIHQVLP-YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC-WSQHALCHVLQHDCCFKEAVQFMEECS   83 (192)
Q Consensus         6 ~al~~~~ral~-~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da-~A~h~lahvl~~~Gr~~eai~~~~~a~   83 (192)
                      +|+..+++++. ..|+++.++..++..+...|++++|++.++++++++|+++ .++...+.++..+|+.++|+..+++++
T Consensus       304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al  383 (530)
T 2ooe_A          304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR  383 (530)
T ss_dssp             HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            89999999997 8999999999999999999999999999999999999996 688999988888888888888888888


Q ss_pred             hhccCCCCcchhhhHHHHHHH-HHhCCCCHHHHHHHHHHhhhhh
Q 029491           84 STWSSCSSFMYTHNWWHVALC-YLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        84 ~~~p~~~~~~~~h~~WhlAl~-~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ...|..     .+.++..|.. +...| ++++|..+|++++...
T Consensus       384 ~~~~~~-----~~~~~~~a~~~~~~~~-~~~~A~~~~e~al~~~  421 (530)
T 2ooe_A          384 EDARTR-----HHVYVTAALMEYYCSK-DKSVAFKIFELGLKKY  421 (530)
T ss_dssp             TCTTCC-----THHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHH
T ss_pred             hccCCc-----hHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHC
Confidence            875542     2333333333 22467 7888888888888764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.08  E-value=1.4e-09  Score=93.15  Aligned_cols=117  Identities=12%  Similarity=-0.041  Sum_probs=108.9

Q ss_pred             hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcccCCCHHHHHHHHHHH----Hhc---CCHHH
Q 029491            4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG--QMSDAEEAAKKGLKINKHDCWSQHALCHVL----QHD---CCFKE   74 (192)
Q Consensus         4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g--~~~eAe~~~rrALaL~P~da~A~h~lahvl----~~~---Gr~~e   74 (192)
                      .++|+....++|..+|++..++...+.+|...|  +++++.+.+.++|.+||.+.++++..+.++    ...   ++.++
T Consensus        49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~  128 (306)
T 3dra_A           49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR  128 (306)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred             CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence            468999999999999999999999999999999  999999999999999999999999999999    776   89999


Q ss_pred             HHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHH--HHHHHHHHhhhhh
Q 029491           75 AVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR--KVLEIYDNHIWKE  126 (192)
Q Consensus        75 ai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~d--eAl~~yd~~i~~~  126 (192)
                      ++.++++++..+|.+     .|.|-|.+.+.-.+| .++  ++++.+++.|...
T Consensus       129 EL~~~~~~l~~~pkn-----y~aW~~R~~vl~~l~-~~~~~~EL~~~~~~i~~d  176 (306)
T 3dra_A          129 EFDILEAMLSSDPKN-----HHVWSYRKWLVDTFD-LHNDAKELSFVDKVIDTD  176 (306)
T ss_dssp             HHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhc-ccChHHHHHHHHHHHHhC
Confidence            999999999999984     578888988888888 888  9999999999874

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.07  E-value=9.4e-09  Score=82.98  Aligned_cols=112  Identities=13%  Similarity=0.034  Sum_probs=83.0

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh----cCCHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE----LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCFK   73 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e----~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~----~Gr~~   73 (192)
                      |+.++|+..+++++...  ++.++..+|.++..    .+++++|+..+++|+.+  +++.++..+|.++..    .|+++
T Consensus        56 ~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~  131 (273)
T 1ouv_A           56 KNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFK  131 (273)
T ss_dssp             CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred             CCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHH
Confidence            67777888888877763  67777788888877    88888888888888776  377888888888887    88888


Q ss_pred             HHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHh----CCCCHHHHHHHHHHhhhh
Q 029491           74 EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        74 eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~----~G~~~deAl~~yd~~i~~  125 (192)
                      +|+.+++++++..+.     .  ....+|.++..    .| ++++|+..|++++..
T Consensus       132 ~A~~~~~~a~~~~~~-----~--a~~~lg~~~~~~~~~~~-~~~~A~~~~~~a~~~  179 (273)
T 1ouv_A          132 KAVEYFTKACDLNDG-----D--GCTILGSLYDAGRGTPK-DLKKALASYDKACDL  179 (273)
T ss_dssp             HHHHHHHHHHHTTCH-----H--HHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCcH-----H--HHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHC
Confidence            888888888776421     2  23347777766    66 788888888777765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.05  E-value=5.1e-09  Score=96.13  Aligned_cols=135  Identities=13%  Similarity=0.101  Sum_probs=117.2

Q ss_pred             hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcC--C
Q 029491            4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ----------MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC--C   71 (192)
Q Consensus         4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~----------~~eAe~~~rrALaL~P~da~A~h~lahvl~~~G--r   71 (192)
                      .++|+..+.+++..+|++..++...+.++...|+          +++|.+.+.+++..+|++.++++..+.++...|  +
T Consensus        45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~  124 (567)
T 1dce_A           45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN  124 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence            4688999999999999999999999999999998          999999999999999999999999999999999  7


Q ss_pred             HHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHh
Q 029491           72 FKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRV  148 (192)
Q Consensus        72 ~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl  148 (192)
                      +++++++++++++.+|++     .|.|-|.+.+....|..++++++.+++.|...  ++   ..........+|.++
T Consensus       125 ~~~el~~~~k~l~~d~~N-----~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~---n~saW~~r~~ll~~l  191 (567)
T 1dce_A          125 WARELELCARFLEADERN-----FHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FS---NYSSWHYRSCLLPQL  191 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CC---CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccc-----ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CC---CccHHHHHHHHHHhh
Confidence            799999999999999884     46777888877777646999999999999875  42   233445666666665

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.05  E-value=1.7e-09  Score=96.32  Aligned_cols=119  Identities=5%  Similarity=-0.075  Sum_probs=105.8

Q ss_pred             CCChHHHHHHHHhhcCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHH-HhcCCHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQED-FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVL-QHDCCFKEAVQF   78 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~-~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl-~~~Gr~~eai~~   78 (192)
                      .|+.++++..+++++...|.++ .++..++..+...|++++|++.+++|++..|.+...+...+.+. ...|+.++|+..
T Consensus       334 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~  413 (530)
T 2ooe_A          334 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI  413 (530)
T ss_dssp             TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHH
Confidence            4899999999999999999986 68999999999999999999999999999999888777777663 359999999999


Q ss_pred             HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      +++++...|+++     ..|.+++.++...| ++++|..+|++++..
T Consensus       414 ~e~al~~~p~~~-----~~~~~~~~~~~~~g-~~~~Ar~~~~~al~~  454 (530)
T 2ooe_A          414 FELGLKKYGDIP-----EYVLAYIDYLSHLN-EDNNTRVLFERVLTS  454 (530)
T ss_dssp             HHHHHHHHTTCH-----HHHHHHHHHHTTTT-CHHHHHHHHHHHHHS
T ss_pred             HHHHHHHCCCCH-----HHHHHHHHHHHhCC-CHhhHHHHHHHHHhc
Confidence            999999998853     36667888888898 999999999999986

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.03  E-value=1.9e-10  Score=102.95  Aligned_cols=99  Identities=9%  Similarity=0.033  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHH
Q 029491           22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHV  101 (192)
Q Consensus        22 ~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~Whl  101 (192)
                      +..+..+|..+...|++++|++.+++|++++|+++.++.++|.++..+|++++|+..+++++++.|...   .  .+..+
T Consensus         6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~--~~~~l   80 (477)
T 1wao_1            6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI---K--GYYRR   80 (477)
T ss_dssp             HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH---H--HHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---H--HHHHH
Confidence            344455667778899999999999999999999999999999999999999999999999999998853   3  44569


Q ss_pred             HHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491          102 ALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus       102 Al~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      |.++..+| ++++|++.|++++...
T Consensus        81 g~~~~~~g-~~~eA~~~~~~al~~~  104 (477)
T 1wao_1           81 AASNMALG-KFRAALRDYETVVKVK  104 (477)
T ss_dssp             HHHHHHHT-CHHHHHHHHHHHHHHS
T ss_pred             HHHHHHcC-CHHHHHHHHHHHHHhC
Confidence            99999999 9999999999999874

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.01  E-value=1.5e-09  Score=72.92  Aligned_cols=70  Identities=16%  Similarity=0.199  Sum_probs=67.3

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcC
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC   70 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~G   70 (192)
                      .|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++++|+++.++..+|.++..+|
T Consensus        22 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence            4899999999999999999999999999999999999999999999999999999999999999998765

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.01  E-value=2.6e-09  Score=73.64  Aligned_cols=87  Identities=9%  Similarity=0.098  Sum_probs=76.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhcccCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHH
Q 029491           26 GILAFSLLELGQMSDAEEAAKKGLKINKHDCW-SQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALC  104 (192)
Q Consensus        26 ~~laf~L~e~g~~~eAe~~~rrALaL~P~da~-A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~  104 (192)
                      ...|..+...|++++|+..++++++++|+++. ++..+|.++..+|++++|+..+++++.+.|+++.   .+.+      
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~------   74 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA---LQAR------   74 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH---HHHH------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH---HHHH------
Confidence            35678899999999999999999999999999 9999999999999999999999999999998642   2211      


Q ss_pred             HHhCCCCHHHHHHHHHHhhhhh
Q 029491          105 YLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus       105 ~l~~G~~~deAl~~yd~~i~~~  126 (192)
                          + .+++++..|++.+...
T Consensus        75 ----~-~~~~a~~~~~~~~~~~   91 (99)
T 2kc7_A           75 ----K-MVMDILNFYNKDMYNQ   91 (99)
T ss_dssp             ----H-HHHHHHHHHCCTTHHH
T ss_pred             ----H-HHHHHHHHHHHHhccC
Confidence                5 6889999998887765

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.00  E-value=4.7e-09  Score=91.12  Aligned_cols=99  Identities=9%  Similarity=-0.091  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhc----------------ccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhh
Q 029491           22 DFIFGILAFSLLELGQMSDAEEAAKKGLK----------------INKHDCWSQHALCHVLQHDCCFKEAVQFMEECSST   85 (192)
Q Consensus        22 ~~~~~~laf~L~e~g~~~eAe~~~rrALa----------------L~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~   85 (192)
                      +..+..+|..+...|+|++|++.+++|++                ++|.++.++.++|.++..+|++++|+..+++++.+
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            45678899999999999999999999999                89999999999999999999999999999999999


Q ss_pred             ccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           86 WSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        86 ~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .|+..   .  .+..+|.++..+| ++++|+..|++++...
T Consensus       303 ~p~~~---~--a~~~lg~~~~~~g-~~~eA~~~l~~Al~l~  337 (370)
T 1ihg_A          303 DPSNT---K--ALYRRAQGWQGLK-EYDQALADLKKAQEIA  337 (370)
T ss_dssp             CTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred             CchhH---H--HHHHHHHHHHHcc-CHHHHHHHHHHHHHhC
Confidence            98853   3  4456999999999 9999999999999884

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.99  E-value=2e-09  Score=91.61  Aligned_cols=123  Identities=10%  Similarity=0.030  Sum_probs=102.8

Q ss_pred             CCChHHHHHHHHhhcCCCC---C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccC------CCHHHHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQ---Q----EDFIFGILAFSLLELGQMSDAEEAAKKGLKINK------HDCWSQHALCHVLQ   67 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p---~----~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P------~da~A~h~lahvl~   67 (192)
                      +|++..|+..+.+++...+   +    .+.++.++|.++...|++++|++.+++|+.+.+      ..+.+++++|.++.
T Consensus       154 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  233 (378)
T 3q15_A          154 MKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD  233 (378)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            5889999999999998643   2    356888999999999999999999999999854      23578999999999


Q ss_pred             hcCCHHHHHHHHHHhHhhccC--CCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           68 HDCCFKEAVQFMEECSSTWSS--CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        68 ~~Gr~~eai~~~~~a~~~~p~--~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .+|++++|+..+++++.+...  ++.  ......++|.++...| ++++|+..|++++...
T Consensus       234 ~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~  291 (378)
T 3q15_A          234 RSGDDQMAVEHFQKAAKVSREKVPDL--LPKVLFGLSWTLCKAG-QTQKAFQFIEEGLDHI  291 (378)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHCGGG--HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred             HCCCHHHHHHHHHHHHHHHHhhCChh--HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
Confidence            999999999999999984331  111  2345567999999999 9999999999999874

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.98  E-value=6.1e-09  Score=89.05  Aligned_cols=118  Identities=9%  Similarity=-0.005  Sum_probs=108.1

Q ss_pred             ChHHHHHHHHhhcCCCCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHH--
Q 029491            3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSL----LEL---GQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFK--   73 (192)
Q Consensus         3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L----~e~---g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~--   73 (192)
                      +..+++..+.+++..+|.+..++...+.++    ...   ++++++.+.+.++|.++|.+.++++..+.++...|+.+  
T Consensus        84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~  163 (306)
T 3dra_A           84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDA  163 (306)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCH
T ss_pred             cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChH
Confidence            889999999999999999999999999999    666   89999999999999999999999999999999999998  


Q ss_pred             HHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCC------HHHHHHHHHHhhhhh
Q 029491           74 EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSP------MRKVLEIYDNHIWKE  126 (192)
Q Consensus        74 eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~------~deAl~~yd~~i~~~  126 (192)
                      +.++++++++..+|.+     .|.|-|.+......| +      +++++..+++.|...
T Consensus       164 ~EL~~~~~~i~~d~~N-----~sAW~~R~~ll~~l~-~~~~~~~~~eEl~~~~~aI~~~  216 (306)
T 3dra_A          164 KELSFVDKVIDTDLKN-----NSAWSHRFFLLFSKK-HLATDNTIDEELNYVKDKIVKC  216 (306)
T ss_dssp             HHHHHHHHHHHHCTTC-----HHHHHHHHHHHHSSG-GGCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhcc-ccchhhhHHHHHHHHHHHHHhC
Confidence            9999999999999884     356667777777777 6      999999999999885

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.98  E-value=8.1e-10  Score=76.20  Aligned_cols=81  Identities=10%  Similarity=0.091  Sum_probs=75.8

Q ss_pred             CChHHHHHHHHhhcCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDF-IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~-~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      |++++|+..+++++..+|+++. ++..+|.++...|++++|++.++++++++|+++.++..        +.+.+++..++
T Consensus        14 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~   85 (99)
T 2kc7_A           14 GDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYN   85 (99)
T ss_dssp             TCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHH
Confidence            8899999999999999999999 99999999999999999999999999999999988744        88899999999


Q ss_pred             HhHhhccCCC
Q 029491           81 ECSSTWSSCS   90 (192)
Q Consensus        81 ~a~~~~p~~~   90 (192)
                      +.....|+.+
T Consensus        86 ~~~~~~p~~~   95 (99)
T 2kc7_A           86 KDMYNQLEHH   95 (99)
T ss_dssp             CTTHHHHCCS
T ss_pred             HHhccCcccc
Confidence            9999988854

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.98  E-value=3.6e-09  Score=93.02  Aligned_cols=115  Identities=7%  Similarity=-0.088  Sum_probs=93.2

Q ss_pred             hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCH
Q 029491            4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ-----------MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF   72 (192)
Q Consensus         4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~-----------~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~   72 (192)
                      ..++++.++||++.+|++++++..+++++....-           ..+|.+ ...++.++|+++.++.+++.++..+|++
T Consensus       215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~-a~~a~~~~~~~a~~~~alal~~l~~gd~  293 (372)
T 3ly7_A          215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID-NIVTLPELNNLSIIYQIKAVSALVKGKT  293 (372)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HHHTCGGGTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH-HHHhcccCCcCHHHHHHHHHHHHhCCCH
Confidence            4789999999999999999999999887753211           112222 2245688999999999999999999999


Q ss_pred             HHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           73 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        73 ~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ++|+..+++++.++|+    ...+..  +|..+...| ++++|++.|++++...
T Consensus       294 d~A~~~l~rAl~Ln~s----~~a~~l--lG~~~~~~G-~~~eA~e~~~~AlrL~  340 (372)
T 3ly7_A          294 DESYQAINTGIDLEMS----WLNYVL--LGKVYEMKG-MNREAADAYLTAFNLR  340 (372)
T ss_dssp             HHHHHHHHHHHHHCCC----HHHHHH--HHHHHHHTT-CHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhcCCC----HHHHHH--HHHHHHHCC-CHHHHHHHHHHHHhcC
Confidence            9999999999999854    123333  788888888 9999999999999985

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.98  E-value=1.1e-09  Score=83.83  Aligned_cols=120  Identities=9%  Similarity=-0.021  Sum_probs=103.6

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFS-LLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM   79 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~-L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~   79 (192)
                      .|++++|+..+++++...| ++.++..++.. +.+.+...+|++.++++++++|+++.++.++|.++..+|++++|+..+
T Consensus        53 ~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~  131 (176)
T 2r5s_A           53 TKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL  131 (176)
T ss_dssp             TTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence            5899999999999999999 88877776644 334445556899999999999999999999999999999999999999


Q ss_pred             HHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        80 ~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      +++++..|+...   ...+.+++.++..+| ++++|+..|++.+..
T Consensus       132 ~~~l~~~p~~~~---~~a~~~l~~~~~~~g-~~~~A~~~y~~al~~  173 (176)
T 2r5s_A          132 WNILKVNLGAQD---GEVKKTFMDILSALG-QGNAIASKYRRQLYS  173 (176)
T ss_dssp             HHHHTTCTTTTT---THHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred             HHHHHhCcccCh---HHHHHHHHHHHHHhC-CCCcHHHHHHHHHHH
Confidence            999999987532   234456999999999 999999999999875

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.96  E-value=7.6e-09  Score=82.06  Aligned_cols=115  Identities=12%  Similarity=0.069  Sum_probs=73.6

Q ss_pred             ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccC--CCHHHHHHHHHHHHh----cCCH
Q 029491            3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE----LGQMSDAEEAAKKGLKINK--HDCWSQHALCHVLQH----DCCF   72 (192)
Q Consensus         3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e----~g~~~eAe~~~rrALaL~P--~da~A~h~lahvl~~----~Gr~   72 (192)
                      +..+|+..+++++  .++++.++.++|..+..    .+++++|+..+++|+++.|  +++.++.++|.++..    .++.
T Consensus        68 ~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~  145 (212)
T 3rjv_A           68 DYPQARQLAEKAV--EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDD  145 (212)
T ss_dssp             CHHHHHHHHHHHH--HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCH
T ss_pred             CHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCH
Confidence            5666667777663  34666677777776665    6677777777777777766  346777777777776    6677


Q ss_pred             HHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCC-----CHHHHHHHHHHhhhh
Q 029491           73 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHS-----PMRKVLEIYDNHIWK  125 (192)
Q Consensus        73 ~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~-----~~deAl~~yd~~i~~  125 (192)
                      ++|+.+++++... |.++   .  ...++|.++....+     ++++|+.+|++++..
T Consensus       146 ~~A~~~~~~A~~~-~~~~---~--a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          146 VKASEYFKGSSSL-SRTG---Y--AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             HHHHHHHHHHHHT-SCTT---H--HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCCH---H--HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence            7777777777666 3322   2  22346666654322     567777777776665

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.95  E-value=3.4e-09  Score=90.19  Aligned_cols=124  Identities=8%  Similarity=-0.046  Sum_probs=104.7

Q ss_pred             CCChHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC-------CHHHHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYN------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH-------DCWSQHALCHVLQ   67 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~------p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~-------da~A~h~lahvl~   67 (192)
                      .|++.+|+..+++++...      |..+.++..+|.++...|++++|...+++|+++.+.       .+.++.++|.++.
T Consensus       114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~  193 (378)
T 3q15_A          114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD  193 (378)
T ss_dssp             TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred             HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence            489999999999999863      235688999999999999999999999999998654       3568889999999


Q ss_pred             hcCCHHHHHHHHHHhHhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           68 HDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        68 ~~Gr~~eai~~~~~a~~~~p~~~~-~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      .+|++++|+..+++++++.+..+. ........++|.++...| ++++|+..|++++..
T Consensus       194 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~-~~~~A~~~~~~al~~  251 (378)
T 3q15_A          194 DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG-DDQMAVEHFQKAAKV  251 (378)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Confidence            999999999999999987654322 112345557999999999 999999999999984

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.95  E-value=7e-09  Score=74.95  Aligned_cols=104  Identities=16%  Similarity=0.097  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCc-ch
Q 029491           22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC------WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSF-MY   94 (192)
Q Consensus        22 ~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da------~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~-~~   94 (192)
                      +.++..+|..+...|++++|+..+++++.+.|...      .++..+|.++..+|++++|+..++++++..+..+.. ..
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            56788999999999999999999999999987654      589999999999999999999999999887764321 12


Q ss_pred             hhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           95 THNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        95 ~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ......+|.++...| ++++|+..+++.+...
T Consensus        89 ~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~  119 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQ-DYEKAIDYHLKHLAIA  119 (164)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            334557999999999 9999999999998764

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.95  E-value=7.2e-10  Score=94.63  Aligned_cols=102  Identities=9%  Similarity=-0.053  Sum_probs=90.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH-----------------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491           19 QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC-----------------WSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus        19 p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da-----------------~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      +..+..+..+|..+...|+|++|+..+++|+.++|++.                 .++.++|.++..+|++++|+..+++
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~  255 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI  255 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34567788999999999999999999999999999988                 4999999999999999999999999


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ++.+.|++.   .  .+..+|.+++.+| ++++|+..|++++...
T Consensus       256 al~~~p~~~---~--a~~~lg~a~~~~g-~~~~A~~~l~~al~l~  294 (338)
T 2if4_A          256 VLTEEEKNP---K--ALFRRGKAKAELG-QMDSARDDFRKAQKYA  294 (338)
T ss_dssp             HHHHCTTCH---H--HHHHHHHHHHTTT-CHHHHHHHHHHTTC--
T ss_pred             HHHhCCCCH---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHHHC
Confidence            999998853   3  4456999999999 9999999999998774

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.95  E-value=2.4e-09  Score=98.35  Aligned_cols=117  Identities=14%  Similarity=0.098  Sum_probs=105.3

Q ss_pred             hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcC-CHHHHHHHHH
Q 029491            4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG--QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC-CFKEAVQFME   80 (192)
Q Consensus         4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g--~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~G-r~~eai~~~~   80 (192)
                      +.+++..+.+++..+|.+..++...++++...|  ++++|.+.+.++++++|+|..|++..+.++...| +.++++++++
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~  168 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD  168 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHH
Confidence            789999999999999999999999999999999  7799999999999999999999999999999999 9999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhC--------------CCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEG--------------HSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~--------------G~~~deAl~~yd~~i~~~  126 (192)
                      ++++.+|.+.+     .|-|.+..+..+              + .++++++.|+++|...
T Consensus       169 ~~I~~~p~n~s-----aW~~r~~ll~~l~~~~~~~~~~~~~~~-~~~eel~~~~~ai~~~  222 (567)
T 1dce_A          169 SLITRNFSNYS-----SWHYRSCLLPQLHPQPDSGPQGRLPEN-VLLKELELVQNAFFTD  222 (567)
T ss_dssp             TTTTTTCCCHH-----HHHHHHHHHHHHSCCCCSSSCCSSCHH-HHHHHHHHHHHHHHHC
T ss_pred             HHHHHCCCCcc-----HHHHHHHHHHhhcccccccccccccHH-HHHHHHHHHHHHHhhC
Confidence            99999998643     444566655443              4 6899999999999875

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.93  E-value=4.9e-08  Score=84.48  Aligned_cols=133  Identities=13%  Similarity=0.098  Sum_probs=115.4

Q ss_pred             HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCC--H
Q 029491            5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ----------MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC--F   72 (192)
Q Consensus         5 ~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~----------~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr--~   72 (192)
                      ++|+....+++..+|++..++...+.++...|.          ++++.+.+.++|..+|.+.++++..+.++...|+  .
T Consensus        47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~  126 (331)
T 3dss_A           47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW  126 (331)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence            479999999999999999999999999988876          7899999999999999999999999999999995  8


Q ss_pred             HHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCC-HHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHh
Q 029491           73 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSP-MRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRV  148 (192)
Q Consensus        73 ~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~-~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl  148 (192)
                      +++++++++++..+|.+     .|.|-|.+.+.-..| . ++++++.+++.|...  |+   ..........+|.++
T Consensus       127 ~~EL~~~~k~l~~dprN-----y~AW~~R~~vl~~l~-~~~~eel~~~~~~I~~~--p~---N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          127 ARELELCARFLEADERN-----FHCWDYRRFVAAQAA-VAPAEELAFTDSLITRN--FS---NYSSWHYRSCLLPQL  192 (331)
T ss_dssp             HHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHC--SC---CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhC-cCHHHHHHHHHHHHHHC--CC---CHHHHHHHHHHHHHh
Confidence            99999999999999884     467778888877787 7 699999999999875  43   233445666666666

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.93  E-value=1.6e-08  Score=83.40  Aligned_cols=123  Identities=11%  Similarity=0.040  Sum_probs=99.5

Q ss_pred             CChHHHHHHHHhhcCCCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH------HHHHHHHHHHHhc
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDF------IFGILAFSLLELGQMSDAEEAAKKGLKINKHDC------WSQHALCHVLQHD   69 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~------~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da------~A~h~lahvl~~~   69 (192)
                      |+++++...+++++...+..+.      .+..+|..+...|++++|+..+++|+.+.+...      .++.++|.++..+
T Consensus        89 ~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~  168 (293)
T 3u3w_A           89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAEN  168 (293)
T ss_dssp             TCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHc
Confidence            7899999999999997776654      333467777778899999999999999765433      3799999999999


Q ss_pred             CCHHHHHHHHHHhHhhccCC---CCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           70 CCFKEAVQFMEECSSTWSSC---SSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        70 Gr~~eai~~~~~a~~~~p~~---~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      |++++|+..+++++......   .. .......++|.++..+| +|++|+..|++++...
T Consensus       169 g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~nlg~~y~~~~-~y~~A~~~~~~al~~~  226 (293)
T 3u3w_A          169 GYLKKGIDLFEQILKQLEALHDNEE-FDVKVRYNHAKALYLDS-RYEESLYQVNKAIEIS  226 (293)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSSCCHH-HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHH
Confidence            99999999999999644322   11 13335667999999999 9999999999999874

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.90  E-value=8.2e-09  Score=90.06  Aligned_cols=119  Identities=9%  Similarity=0.058  Sum_probs=108.0

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhc-C-CHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHD-C-CFKEAVQF   78 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g-~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~-G-r~~eai~~   78 (192)
                      +..++++....+++..+|++..++...+.++...| .++++.+.+.++|..||++.++++..+.++... + ++++++++
T Consensus        68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~  147 (349)
T 3q7a_A           68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY  147 (349)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            35578999999999999999999999999999999 599999999999999999999999999999998 8 99999999


Q ss_pred             HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHH--------HHHHHHHHhhhhh
Q 029491           79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR--------KVLEIYDNHIWKE  126 (192)
Q Consensus        79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~d--------eAl~~yd~~i~~~  126 (192)
                      +++++..+|.+     .|.|-|.+.+.-..| .++        ++++.+++.|...
T Consensus       148 ~~k~L~~dpkN-----y~AW~~R~wvl~~l~-~~~~~~~~~~~eELe~~~k~I~~d  197 (349)
T 3q7a_A          148 IHGSLLPDPKN-----YHTWAYLHWLYSHFS-TLGRISEAQWGSELDWCNEMLRVD  197 (349)
T ss_dssp             HHHHTSSCTTC-----HHHHHHHHHHHHHHH-HTTCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhCCCC-----HHHHHHHHHHHHHhc-cccccchhhHHHHHHHHHHHHHhC
Confidence            99999999884     467777777776666 677        9999999999874

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.87  E-value=2e-08  Score=79.54  Aligned_cols=115  Identities=13%  Similarity=0.087  Sum_probs=98.4

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh----cCCHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG----QMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCFK   73 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g----~~~eAe~~~rrALaL~P~da~A~h~lahvl~~----~Gr~~   73 (192)
                      |+.++|+.++++++..  +++.++.++|..+.. +    ++++|+..+++|  .+++++.++.++|.++..    .++++
T Consensus        32 ~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A--~~~g~~~a~~~Lg~~y~~g~g~~~d~~  106 (212)
T 3rjv_A           32 GDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKA--VEAGSKSGEIVLARVLVNRQAGATDVA  106 (212)
T ss_dssp             TCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH--HHTTCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH--HHCCCHHHHHHHHHHHHcCCCCccCHH
Confidence            6889999999999764  789999999999988 7    899999999999  567899999999999998    89999


Q ss_pred             HHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHh----CCCCHHHHHHHHHHhhhh
Q 029491           74 EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        74 eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~----~G~~~deAl~~yd~~i~~  125 (192)
                      +|+.+++++....|.. .  ......++|.++..    .+ ++++|+.+|++++..
T Consensus       107 ~A~~~~~~A~~~~~~~-~--~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A          107 HAITLLQDAARDSESD-A--AVDAQMLLGLIYASGVHGPE-DDVKASEYFKGSSSL  158 (212)
T ss_dssp             HHHHHHHHHTSSTTSH-H--HHHHHHHHHHHHHHTSSSSC-CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCc-c--hHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHc
Confidence            9999999999887621 0  01234459999988    76 899999999999876

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.87  E-value=1.1e-08  Score=71.88  Aligned_cols=70  Identities=16%  Similarity=0.148  Sum_probs=61.6

Q ss_pred             ccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           51 INKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        51 L~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .+|+++.++..+|.++..+|++++|+..+++++++.|+.+   .  .+..+|.++...| ++++|+..|++++...
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~--a~~~lg~~~~~~g-~~~~A~~~~~~al~l~   71 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYV---G--TYYHLGKLYERLD-RTDDAIDTYAQGIEVA   71 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHhhh
Confidence            4899999999999999999999999999999999999864   2  4556999999999 9999999999999874

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.84  E-value=1.8e-08  Score=71.49  Aligned_cols=72  Identities=11%  Similarity=0.013  Sum_probs=68.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCC
Q 029491           18 NQQEDFIFGILAFSLLELGQ---MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC   89 (192)
Q Consensus        18 ~p~~~~~~~~laf~L~e~g~---~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~   89 (192)
                      +|+++.+++.+|-++...+.   .++|...+++||+++|+++.+...+|.++..+|++++|+..+++.++..|..
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            68999999999999976665   7999999999999999999999999999999999999999999999999884

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.82  E-value=6.5e-09  Score=94.18  Aligned_cols=122  Identities=10%  Similarity=-0.079  Sum_probs=98.6

Q ss_pred             CCChHHHHHHHHhhcCC-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccc--------CCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPY-----NQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKIN--------KHDCWSQHALCH   64 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~-----~p~~---~~~~~~laf~L~e~g~~~eAe~~~rrALaL~--------P~da~A~h~lah   64 (192)
                      .|++++|+..+++++..     -|++   ...+.++|.++..+|+|++|+..++++|++.        |+-+.+++++|.
T Consensus       322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  401 (490)
T 3n71_A          322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL  401 (490)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            38899999999998874     2444   4678899999999999999999999999875        555678999999


Q ss_pred             HHHhcCCHHHHHHHHHHhHhhc-----cCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           65 VLQHDCCFKEAVQFMEECSSTW-----SSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        65 vl~~~Gr~~eai~~~~~a~~~~-----p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      ++..+|+++||+..+++++.+.     |+.|..  ....=.++.++.++| .|.+|...|.++...
T Consensus       402 ~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~--~~~~~~l~~~~~e~~-~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          402 TNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT--KDLEAMRMQTEMELR-MFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHH--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            9999999999999999999654     332221  112224888999998 899999999887544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.79  E-value=3.9e-08  Score=85.77  Aligned_cols=120  Identities=8%  Similarity=-0.002  Sum_probs=108.4

Q ss_pred             CC-ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHH----
Q 029491            1 MG-RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL-G-QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFK----   73 (192)
Q Consensus         1 ~G-~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~-g-~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~----   73 (192)
                      +| +..+++..+.+++..+|.+..++...+.++... + +++++.+.+.++|.++|+|..|++..+.++...|+.+    
T Consensus       101 l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~  180 (349)
T 3q7a_A          101 LNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISE  180 (349)
T ss_dssp             TTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCH
T ss_pred             hhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccch
Confidence            35 488999999999999999999999999999998 8 9999999999999999999999999999999999998    


Q ss_pred             ----HHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCC-------HHHHHHHHHHhhhhh
Q 029491           74 ----EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSP-------MRKVLEIYDNHIWKE  126 (192)
Q Consensus        74 ----eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~-------~deAl~~yd~~i~~~  126 (192)
                          ++++++++++..+|.+.     +.|-|.+.....+| +       ++++++.+++.|...
T Consensus       181 ~~~~eELe~~~k~I~~dp~N~-----SAW~~R~~lL~~l~-~~~~~~~~~~eELe~~~~aI~~~  238 (349)
T 3q7a_A          181 AQWGSELDWCNEMLRVDGRNN-----SAWGWRWYLRVSRP-GAETSSRSLQDELIYILKSIHLI  238 (349)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHTTST-TCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHhC
Confidence                99999999999998853     46667777776676 5       799999999999874

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.78  E-value=6.2e-08  Score=83.88  Aligned_cols=117  Identities=14%  Similarity=0.099  Sum_probs=103.0

Q ss_pred             hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCC-HHHHHHHHH
Q 029491            4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ--MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC-FKEAVQFME   80 (192)
Q Consensus         4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~--~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr-~~eai~~~~   80 (192)
                      ..+.+..+.+++..+|.+..++...+.++...|+  ++++.+.+.++++++|.|..|++..+.|+...|+ .++++++++
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~  169 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD  169 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence            4678999999999999999999999999999994  9999999999999999999999999999999999 699999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhC--------------CCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEG--------------HSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~--------------G~~~deAl~~yd~~i~~~  126 (192)
                      +++..+|.+.+     .|-|.+..+..+              + .+++++..++++|...
T Consensus       170 ~~I~~~p~N~S-----AW~~R~~ll~~l~~~~~~~~~~~~~~~-~~~eEle~~~~ai~~~  223 (331)
T 3dss_A          170 SLITRNFSNYS-----SWHYRSCLLPQLHPQPDSGPQGRLPEN-VLLKELELVQNAFFTD  223 (331)
T ss_dssp             HHHHHCSCCHH-----HHHHHHHHHHHHSCCC------CCCHH-HHHHHHHHHHHHHHHS
T ss_pred             HHHHHCCCCHH-----HHHHHHHHHHHhhhccccccccccchH-HHHHHHHHHHHHHHhC
Confidence            99999998643     444555554433              4 5899999999999875

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.76  E-value=2.3e-09  Score=91.12  Aligned_cols=93  Identities=9%  Similarity=-0.036  Sum_probs=77.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHh
Q 029491           28 LAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE  107 (192)
Q Consensus        28 laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~  107 (192)
                      +|..|.+.|+|++|.+.+++.+..+|++. +++.+|.++...||+++++..++++... |+ + +.....+..+|.++-.
T Consensus       108 yA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~d-~-~~~~~a~~~LG~al~~  183 (282)
T 4f3v_A          108 FAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW-PD-K-FLAGAAGVAHGVAAAN  183 (282)
T ss_dssp             HHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC-SC-H-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc-CC-c-ccHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999 9999999999999999999999977653 32 1 1112234459999999


Q ss_pred             CCCCHHHHHHHHHHhhhh
Q 029491          108 GHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus       108 ~G~~~deAl~~yd~~i~~  125 (192)
                      +| ++++|+..|++++..
T Consensus       184 LG-~~~eAl~~l~~a~~g  200 (282)
T 4f3v_A          184 LA-LFTEAERRLTEANDS  200 (282)
T ss_dssp             TT-CHHHHHHHHHHHHTS
T ss_pred             CC-CHHHHHHHHHHHhcC
Confidence            99 999999999998855

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.65  E-value=3.6e-08  Score=84.27  Aligned_cols=87  Identities=8%  Similarity=-0.033  Sum_probs=78.6

Q ss_pred             ChHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHhcccCCC-HHHHHHHHHHHHhc-CCHH
Q 029491            3 RPDLCFDIIHQVLPYNQQ--EDFIFGILAFSLLEL-----GQMSDAEEAAKKGLKINKHD-CWSQHALCHVLQHD-CCFK   73 (192)
Q Consensus         3 ~~~~al~~~~ral~~~p~--~~~~~~~laf~L~e~-----g~~~eAe~~~rrALaL~P~d-a~A~h~lahvl~~~-Gr~~   73 (192)
                      ....+.+.++||++++|+  ++.+|..+|..+...     |+.++|+++++|||+|||+. +.+....|..+..+ |+.+
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence            356788999999999999  678999999999884     99999999999999999975 99999999999884 9999


Q ss_pred             HHHHHHHHhHhhccCC
Q 029491           74 EAVQFMEECSSTWSSC   89 (192)
Q Consensus        74 eai~~~~~a~~~~p~~   89 (192)
                      ++.+.++++++..|+.
T Consensus       258 ~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          258 GFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHHcCCCCC
Confidence            9999999999998874

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.64  E-value=1.6e-07  Score=82.53  Aligned_cols=76  Identities=18%  Similarity=0.180  Sum_probs=70.5

Q ss_pred             hhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCC
Q 029491           13 QVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC   89 (192)
Q Consensus        13 ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~   89 (192)
                      .+++.+|.++.++..+|.++.-.|++++|++.++||+++|| ++.++..+|.++++.|++++|++.+++|++++|..
T Consensus       268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            35678899999999999999989999999999999999997 47788899999999999999999999999999874

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.63  E-value=3.9e-07  Score=80.40  Aligned_cols=110  Identities=12%  Similarity=0.016  Sum_probs=85.4

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcC-----CHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFS-L--LELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC-----CFK   73 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~-L--~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~G-----r~~   73 (192)
                      ++..+|+.+++++.   |+++.++..+|.. +  ...+++++|+..+++|++  ++++.++.++|.++. .|     +.+
T Consensus       231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~-~G~g~~~d~~  304 (452)
T 3e4b_A          231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA--ADQPRAELLLGKLYY-EGKWVPADAK  304 (452)
T ss_dssp             CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred             CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCCCCCHH
Confidence            46788888888887   8888888888887 4  568888899999988874  558888899998887 67     889


Q ss_pred             HHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHh----CCCCHHHHHHHHHHhhhhh
Q 029491           74 EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        74 eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~----~G~~~deAl~~yd~~i~~~  126 (192)
                      +|+.+++++.   |.++   .  ...++|.+|..    .. ++++|+.+|+++....
T Consensus       305 ~A~~~~~~Aa---~g~~---~--A~~~Lg~~y~~G~g~~~-d~~~A~~~~~~Aa~~g  352 (452)
T 3e4b_A          305 AAEAHFEKAV---GREV---A--ADYYLGQIYRRGYLGKV-YPQKALDHLLTAARNG  352 (452)
T ss_dssp             HHHHHHHTTT---TTCH---H--HHHHHHHHHHTTTTSSC-CHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHh---CCCH---H--HHHHHHHHHHCCCCCCc-CHHHHHHHHHHHHhhC
Confidence            9999998888   4432   3  33458887766    22 7889999998887763

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.61  E-value=6.5e-07  Score=66.71  Aligned_cols=110  Identities=5%  Similarity=-0.042  Sum_probs=94.1

Q ss_pred             ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 029491            3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCFKEAVQF   78 (192)
Q Consensus         3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~----~Gr~~eai~~   78 (192)
                      +..+|+..++++....+..+.    +|..+...+.+++|...+++|.+.  +++.+..++|.++..    .+++++|+.+
T Consensus        10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~   83 (138)
T 1klx_A           10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY   83 (138)
T ss_dssp             HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            578899999999988644444    888888888999999999999987  899999999999998    8999999999


Q ss_pred             HHHhHhhccCCCCcchhhhHHHHHHHHHh----CCCCHHHHHHHHHHhhhhh
Q 029491           79 MEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~----~G~~~deAl~~yd~~i~~~  126 (192)
                      ++++.+..  +   ..  ...++|.++..    .+ ++++|+.+|+++....
T Consensus        84 ~~~Aa~~g--~---~~--a~~~Lg~~y~~G~g~~~-d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           84 YSKACGLN--D---QD--GCLILGYKQYAGKGVVK-NEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHTT--C---HH--HHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCC--C---HH--HHHHHHHHHHCCCCCCc-CHHHHHHHHHHHHHCC
Confidence            99999872  1   12  34459999988    77 8999999999998874

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.58  E-value=7.7e-07  Score=78.30  Aligned_cols=113  Identities=12%  Similarity=0.040  Sum_probs=95.3

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh----cCCHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG---QMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCFKE   74 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g---~~~eAe~~~rrALaL~P~da~A~h~lahvl~~----~Gr~~e   74 (192)
                      ++.++|+..+++++..  +++.++..+|..+...|   ++++|++.+++|++.  +++.++.++|.++..    .+++++
T Consensus       310 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~  385 (490)
T 2xm6_A          310 KNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQ  385 (490)
T ss_dssp             CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence            5788888888888775  56778888898888866   889999999999887  789999999999999    899999


Q ss_pred             HHHHHHHhHhhccCCCCcchhhhHHHHHHHHHh----CCCCHHHHHHHHHHhhhhh
Q 029491           75 AVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        75 ai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~----~G~~~deAl~~yd~~i~~~  126 (192)
                      |+.+++++.+..+       ...+.++|.++..    .+ ++++|..+|++++...
T Consensus       386 A~~~~~~A~~~~~-------~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          386 AAIWMRKAAEQGL-------SAAQVQLGEIYYYGLGVER-DYVQAWAWFDTASTND  433 (490)
T ss_dssp             HHHHHHHHHHTTC-------HHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCC-------HHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHCC
Confidence            9999999997631       2245569999887    67 8999999999999875

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.55  E-value=4.2e-07  Score=82.28  Aligned_cols=114  Identities=8%  Similarity=-0.001  Sum_probs=84.1

Q ss_pred             HHHcCCHHHHHHHHHHHhccc-----CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc-----cCCCCcchhhhH
Q 029491           32 LLELGQMSDAEEAAKKGLKIN-----KH---DCWSQHALCHVLQHDCCFKEAVQFMEECSSTW-----SSCSSFMYTHNW   98 (192)
Q Consensus        32 L~e~g~~~eAe~~~rrALaL~-----P~---da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~-----p~~~~~~~~h~~   98 (192)
                      +..+|+|++|+..++++|++.     |+   -+.+++++|.++..+|++++|+..+++++.+.     |+.|.  .+...
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~--~a~~l  396 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ--LGMAV  396 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH--HHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH--HHHHH
Confidence            667999999999999999864     44   45788999999999999999999999999654     23232  22234


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhh
Q 029491           99 WHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVY  149 (192)
Q Consensus        99 WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~  149 (192)
                      -++|..|..+| +|++|..+|++++......-+... ....+.-.+|-...
T Consensus       397 ~nLa~~~~~~G-~~~eA~~~~~~Al~i~~~~lG~~H-p~~~~~~~~l~~~~  445 (490)
T 3n71_A          397 MRAGLTNWHAG-HIEVGHGMICKAYAILLVTHGPSH-PITKDLEAMRMQTE  445 (490)
T ss_dssp             HHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCTTS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHH
Confidence            46999999999 999999999999987531112122 23444445554444

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.55  E-value=1.1e-06  Score=77.50  Aligned_cols=111  Identities=8%  Similarity=0.008  Sum_probs=91.7

Q ss_pred             ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcccCCCHHHHHHHHHH-H--HhcCCHHHH
Q 029491            3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL----GQMSDAEEAAKKGLKINKHDCWSQHALCHV-L--QHDCCFKEA   75 (192)
Q Consensus         3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~----g~~~eAe~~~rrALaL~P~da~A~h~lahv-l--~~~Gr~~ea   75 (192)
                      +..+++.+++++....|.++..+..+|..+...    +++++|+..+++|.   |+++.++.++|.+ +  ...|++++|
T Consensus       194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A  270 (452)
T 3e4b_A          194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQM  270 (452)
T ss_dssp             HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHH
Confidence            778899999999999999999888999988665    69999999999988   9999999999998 5  578999999


Q ss_pred             HHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCC---CCHHHHHHHHHHhh
Q 029491           76 VQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGH---SPMRKVLEIYDNHI  123 (192)
Q Consensus        76 i~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G---~~~deAl~~yd~~i  123 (192)
                      +.+++++.+..  +   ..++  .++|.++....   .++++|+.+|++++
T Consensus       271 ~~~~~~Aa~~g--~---~~A~--~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa  314 (452)
T 3e4b_A          271 MKYLDNGRAAD--Q---PRAE--LLLGKLYYEGKWVPADAKAAEAHFEKAV  314 (452)
T ss_dssp             HHHHHHHHHTT--C---HHHH--HHHHHHHHHCSSSCCCHHHHHHHHHTTT
T ss_pred             HHHHHHHHHCC--C---HHHH--HHHHHHHHcCCCCCCCHHHHHHHHHHHh
Confidence            99999998653  1   1333  35888887520   17999999999988

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.48  E-value=3.6e-06  Score=74.01  Aligned_cols=80  Identities=11%  Similarity=-0.023  Sum_probs=43.2

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh----cCCHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE----LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCFK   73 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e----~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~----~Gr~~   73 (192)
                      ++..+|+..+++++..  +++.++..+|..+..    .+++++|+..+++|++.  +++.++..+|.++..    .++++
T Consensus        57 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~  132 (490)
T 2xm6_A           57 KDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKA  132 (490)
T ss_dssp             CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             cCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHH
Confidence            3455555555555543  445555555555555    55555555555555432  355555555555555    55555


Q ss_pred             HHHHHHHHhHhh
Q 029491           74 EAVQFMEECSST   85 (192)
Q Consensus        74 eai~~~~~a~~~   85 (192)
                      +|+.+++++...
T Consensus       133 ~A~~~~~~a~~~  144 (490)
T 2xm6_A          133 ESVKWFRLAAEQ  144 (490)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHC
Confidence            555555555443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.47  E-value=2.2e-07  Score=82.87  Aligned_cols=87  Identities=8%  Similarity=-0.006  Sum_probs=54.6

Q ss_pred             CHHHHHHHHHHHhcc-----cCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhHhhc-----cCCCCcchhhhHHHHHH
Q 029491           37 QMSDAEEAAKKGLKI-----NKHDC---WSQHALCHVLQHDCCFKEAVQFMEECSSTW-----SSCSSFMYTHNWWHVAL  103 (192)
Q Consensus        37 ~~~eAe~~~rrALaL-----~P~da---~A~h~lahvl~~~Gr~~eai~~~~~a~~~~-----p~~~~~~~~h~~WhlAl  103 (192)
                      +|++|+..++++|++     -|+++   ..+.++|.++..+|+++||+..+++++.+.     |+.|.  .+...-++|.
T Consensus       313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~--~a~~l~nLa~  390 (433)
T 3qww_A          313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN--VASMWLKLGR  390 (433)
T ss_dssp             CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH--HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH--HHHHHHHHHH
Confidence            577777777777764     24443   455667777777777777777777777432     23332  2333335777


Q ss_pred             HHHhCCCCHHHHHHHHHHhhhhh
Q 029491          104 CYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus       104 ~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .|..+| +|++|...|++++...
T Consensus       391 ~~~~qg-~~~eA~~~~~~Al~i~  412 (433)
T 3qww_A          391 LYMGLE-NKAAGEKALKKAIAIM  412 (433)
T ss_dssp             HHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             HHHhcc-CHHHHHHHHHHHHHHH
Confidence            777776 6777777777777665

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.40  E-value=7.9e-07  Score=79.30  Aligned_cols=88  Identities=8%  Similarity=-0.097  Sum_probs=76.5

Q ss_pred             CCChHHHHHHHHhhcCC-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhccc--------CCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPY-----NQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKIN--------KHDCWSQHALCH   64 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~-----~p~~~---~~~~~laf~L~e~g~~~eAe~~~rrALaL~--------P~da~A~h~lah   64 (192)
                      .|++++|+..+++++..     -|+++   ..+.++|.++..+|+|++|+..++++|++.        |+-+..++++|.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            37899999999999874     35655   557888999999999999999999999873        556678999999


Q ss_pred             HHHhcCCHHHHHHHHHHhHhhccC
Q 029491           65 VLQHDCCFKEAVQFMEECSSTWSS   88 (192)
Q Consensus        65 vl~~~Gr~~eai~~~~~a~~~~p~   88 (192)
                      ++..+|+++||+..+++++.+.-.
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~i~~~  414 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIAIMEV  414 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988644

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.40  E-value=1e-06  Score=78.23  Aligned_cols=92  Identities=7%  Similarity=-0.107  Sum_probs=76.4

Q ss_pred             HHHcCCHHHHHHHHHHHhcc-----cCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc-----cCCCCcchhhhH
Q 029491           32 LLELGQMSDAEEAAKKGLKI-----NKHD---CWSQHALCHVLQHDCCFKEAVQFMEECSSTW-----SSCSSFMYTHNW   98 (192)
Q Consensus        32 L~e~g~~~eAe~~~rrALaL-----~P~d---a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~-----p~~~~~~~~h~~   98 (192)
                      +...|+|++|++.++++|++     -|++   +..+.+++.++..+|++++|+..+++++++.     |..|.  .+...
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~--~a~~l  374 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV--RGVQV  374 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH--HHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH--HHHHH
Confidence            45689999999999999986     3555   4678899999999999999999999999654     33332  34455


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           99 WHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        99 WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .++|..|..+| ++++|+..|++++...
T Consensus       375 ~nLa~~~~~~g-~~~eA~~~~~~Al~i~  401 (429)
T 3qwp_A          375 MKVGKLQLHQG-MFPQAMKNLRLAFDIM  401 (429)
T ss_dssp             HHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence            67999999999 9999999999999875

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.36  E-value=5.3e-06  Score=70.47  Aligned_cols=146  Identities=9%  Similarity=0.005  Sum_probs=112.9

Q ss_pred             CChHHHHHHHHhhcCCCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHH------
Q 029491            2 GRPDLCFDIIHQVLPYNQQED-----------------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS------   58 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~-----------------~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A------   58 (192)
                      |++.+|++.+.+++...|...                 .++..+|.++...|++++|.+.+.+++.+.+....+      
T Consensus        18 ~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   97 (434)
T 4b4t_Q           18 KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVL   97 (434)
T ss_dssp             TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence            789999999999999877543                 257889999999999999999999999988776543      


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHH
Q 029491           59 QHALCHVLQHDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEV  137 (192)
Q Consensus        59 ~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~-~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~  137 (192)
                      ...++.+....|+.++++..+++++...+.... +......-.+|..+.+.| +|++|+.++.+.+....   ..+....
T Consensus        98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~l~~~~~~~~---~~~~~~~  173 (434)
T 4b4t_Q           98 KTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKK-QYKDSLALINDLLREFK---KLDDKPS  173 (434)
T ss_dssp             HHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHT---TSSCSTH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHHH---hcccchh
Confidence            456788999999999999999999976554321 234445567999999999 99999999998876642   1222234


Q ss_pred             HHHHHHHHHHhhhc
Q 029491          138 YLNALGLLLRVYVR  151 (192)
Q Consensus       138 ~~da~sLL~Rl~l~  151 (192)
                      .+..-..+.|+.+.
T Consensus       174 ~~~~~~~~~~~~~~  187 (434)
T 4b4t_Q          174 LVDVHLLESKVYHK  187 (434)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            55666666666654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.35  E-value=4.3e-06  Score=71.39  Aligned_cols=105  Identities=9%  Similarity=-0.086  Sum_probs=84.6

Q ss_pred             CCCCCHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHhcccCC--CHHHHHHHHHHHHhc-----CCHHHHHHH
Q 029491           17 YNQQEDFIFGILAFSLLE-----LG------QMSDAEEAAKKGLKINKH--DCWSQHALCHVLQHD-----CCFKEAVQF   78 (192)
Q Consensus        17 ~~p~~~~~~~~laf~L~e-----~g------~~~eAe~~~rrALaL~P~--da~A~h~lahvl~~~-----Gr~~eai~~   78 (192)
                      .+|+++.++.-.|.++..     .|      ...+|+...+||++|+|+  +.-++..+|..+...     |+.++|...
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            567777666666555433     12      356799999999999999  888999999998884     999999999


Q ss_pred             HHHhHhhccCCCCcchhhhHHHHHHHHHhC-CCCHHHHHHHHHHhhhhh
Q 029491           79 MEECSSTWSSCSSFMYTHNWWHVALCYLEG-HSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~-G~~~deAl~~yd~~i~~~  126 (192)
                      ++++++++|+.+  +..++.  +|-++... | +++++.+.+++++...
T Consensus       227 ferAL~LnP~~~--id~~v~--YA~~l~~~~g-d~~~a~~~L~kAL~a~  270 (301)
T 3u64_A          227 FEHLTRYCSAHD--PDHHIT--YADALCIPLN-NRAGFDEALDRALAID  270 (301)
T ss_dssp             HHHHHHHCCTTC--SHHHHH--HHHHTTTTTT-CHHHHHHHHHHHHHCC
T ss_pred             HHHHHHhCCCCC--chHHHH--HHHHHHHhcC-CHHHHHHHHHHHHcCC
Confidence            999999999743  255555  78877664 7 8999999999999975

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.34  E-value=2.9e-06  Score=72.87  Aligned_cols=117  Identities=10%  Similarity=0.012  Sum_probs=96.5

Q ss_pred             CChHHHHHHHHhhcCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccC------CCHHHHHHHHHHHHhcC--C
Q 029491            2 GRPDLCFDIIHQVLPYNQ--QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINK------HDCWSQHALCHVLQHDC--C   71 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p--~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P------~da~A~h~lahvl~~~G--r   71 (192)
                      |+.++|+..+.+++...|  ++..+..+.+.++..+|+.+.|.+.+++..+.+|      +.....-+-++|...+|  +
T Consensus       114 g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~  193 (310)
T 3mv2_B          114 GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKET  193 (310)
T ss_dssp             TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCST
T ss_pred             CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCcc
Confidence            899999999999999887  8889999999999999999999999999999999      44455555577788888  9


Q ss_pred             HHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           72 FKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        72 ~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      ..+|...|++.....|+..   .....|+   +++.+| ++++|.+.++..+..
T Consensus       194 ~q~A~~~f~El~~~~p~~~---~~~lLln---~~~~~g-~~~eAe~~L~~l~~~  240 (310)
T 3mv2_B          194 ATSNFYYYEELSQTFPTWK---TQLGLLN---LHLQQR-NIAEAQGIVELLLSD  240 (310)
T ss_dssp             TTHHHHHHHHHHTTSCSHH---HHHHHHH---HHHHHT-CHHHHHHHHHHHHSH
T ss_pred             HHHHHHHHHHHHHhCCCcc---cHHHHHH---HHHHcC-CHHHHHHHHHHHHHh
Confidence            9999999999988776511   1223333   678888 999999999866553

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.28  E-value=5.8e-06  Score=58.29  Aligned_cols=69  Identities=9%  Similarity=-0.095  Sum_probs=62.2

Q ss_pred             cCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           52 NKHDCWSQHALCHVLQHDCC---FKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        52 ~P~da~A~h~lahvl~~~Gr---~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +|+|+..+..+|.++.+.+.   .++|...+++++..+|+++   .  ..+-+|..++..| +|++|+..|++.+...
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~---r--A~~~lg~~~~~~g-~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNE---A--ALSLIANDHFISF-RFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHTCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCH---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHhhC
Confidence            69999999999999998887   7999999999999999974   3  4455999999998 9999999999998875

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.25  E-value=1.9e-06  Score=76.61  Aligned_cols=88  Identities=7%  Similarity=0.018  Sum_probs=74.9

Q ss_pred             CCChHHHHHHHHhhcCC-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhccc--------CCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPY-----NQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKIN--------KHDCWSQHALCH   64 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~-----~p~~~---~~~~~laf~L~e~g~~~eAe~~~rrALaL~--------P~da~A~h~lah   64 (192)
                      .|++++|+..+++++..     -|+++   ..+.++|.++..+|+|++|+..++++|++.        |+-+..+.++|.
T Consensus       300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~  379 (429)
T 3qwp_A          300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK  379 (429)
T ss_dssp             TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence            37889999999999875     24554   567888999999999999999999999864        445567889999


Q ss_pred             HHHhcCCHHHHHHHHHHhHhhccC
Q 029491           65 VLQHDCCFKEAVQFMEECSSTWSS   88 (192)
Q Consensus        65 vl~~~Gr~~eai~~~~~a~~~~p~   88 (192)
                      ++..+|+++||+..+++++++.-.
T Consensus       380 ~~~~~g~~~eA~~~~~~Al~i~~~  403 (429)
T 3qwp_A          380 LQLHQGMFPQAMKNLRLAFDIMRV  403 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999976533

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.20  E-value=1.4e-05  Score=80.41  Aligned_cols=110  Identities=15%  Similarity=0.197  Sum_probs=83.0

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |++++|.+.++|+     +.+.++..+|.+++..|++++|+..+.+|     +|+.++..++.++...|+++|+++++..
T Consensus      1090 ~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~m 1159 (1630)
T 1xi4_A         1090 GNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQM 1159 (1630)
T ss_pred             hhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4455555555544     67899999999999999999999999887     9999999999999999999999999988


Q ss_pred             hHhhccCC-------------CC------c---chhhhHHHHHHHHHhCCCCHHHHHHHHHHh
Q 029491           82 CSSTWSSC-------------SS------F---MYTHNWWHVALCYLEGHSPMRKVLEIYDNH  122 (192)
Q Consensus        82 a~~~~p~~-------------~~------~---~~~h~~WhlAl~~l~~G~~~deAl~~yd~~  122 (192)
                      +....+..             ..      |   ...-.+..+|..+.+.| +|++|...|..+
T Consensus      1160 Ark~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg-~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A         1160 ARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEK-MYDAAKLLYNNV 1221 (1630)
T ss_pred             HHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhh
Confidence            87655331             00      0   00012345777777777 777777777663

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.08  E-value=1.2e-05  Score=62.37  Aligned_cols=83  Identities=8%  Similarity=-0.111  Sum_probs=57.3

Q ss_pred             HHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccc-C-CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            6 LCFDIIHQVLPYNQQEDFIFGILAFSLLELG---QMSDAEEAAKKGLKIN-K-HDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         6 ~al~~~~ral~~~p~~~~~~~~laf~L~e~g---~~~eAe~~~rrALaL~-P-~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .+++.+.+.++..|.+..+...+|++|...+   ++++++...+..+..+ | ++...+..+|-.+...|++++|+.+++
T Consensus        16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~   95 (152)
T 1pc2_A           16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR   95 (152)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            4455566666666667777777777777766   5557777777777776 6 556777777777777777777777777


Q ss_pred             HhHhhccC
Q 029491           81 ECSSTWSS   88 (192)
Q Consensus        81 ~a~~~~p~   88 (192)
                      ++++..|+
T Consensus        96 ~lL~ieP~  103 (152)
T 1pc2_A           96 GLLQTEPQ  103 (152)
T ss_dssp             HHHHHCTT
T ss_pred             HHHhcCCC
Confidence            77777766

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.08  E-value=4.1e-05  Score=56.73  Aligned_cols=79  Identities=13%  Similarity=-0.037  Sum_probs=73.0

Q ss_pred             ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh----cCCHHH
Q 029491            3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE----LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCFKE   74 (192)
Q Consensus         3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e----~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~----~Gr~~e   74 (192)
                      ..++|+.+++++...  +++.++.++|..+..    .+++++|...+++|.+.  +++.+..++|.++..    .++.++
T Consensus        40 ~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~  115 (138)
T 1klx_A           40 NKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQ  115 (138)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             CHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHH
Confidence            456688999999876  889999999999999    89999999999999987  899999999999999    999999


Q ss_pred             HHHHHHHhHhh
Q 029491           75 AVQFMEECSST   85 (192)
Q Consensus        75 ai~~~~~a~~~   85 (192)
                      |+.+++++.+.
T Consensus       116 A~~~~~~Aa~~  126 (138)
T 1klx_A          116 AVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHC
Confidence            99999999987

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.03  E-value=1.2e-05  Score=56.98  Aligned_cols=65  Identities=14%  Similarity=0.062  Sum_probs=48.5

Q ss_pred             CCChHHHHHHHHhhcCCC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYN-------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHV   65 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~-------p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahv   65 (192)
                      .|++..|..++++|+...       +..+.++..+|+++.+.|++++|...+++|+.++|+++.+.+++...
T Consensus        18 ~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~~   89 (104)
T 2v5f_A           18 EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYF   89 (104)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHHHH
Confidence            367777888888777643       23467777888888888888888888888888888888887777633

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.01  E-value=3.7e-05  Score=59.58  Aligned_cols=85  Identities=11%  Similarity=0.028  Sum_probs=73.5

Q ss_pred             CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhHhhc-cCCCCcchhhhHHHHHHHHHhCCCCH
Q 029491           37 QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC---CFKEAVQFMEECSSTW-SSCSSFMYTHNWWHVALCYLEGHSPM  112 (192)
Q Consensus        37 ~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~G---r~~eai~~~~~a~~~~-p~~~~~~~~h~~WhlAl~~l~~G~~~  112 (192)
                      ....+++.+.+.++.+|.+..+..++|++|....   ..++||..++..++.+ |..    ......++|+.++.+| +|
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~----~rd~lY~LAv~~~kl~-~Y   87 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE----QRDYVFYLAVGNYRLK-EY   87 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH----HHHHHHHHHHHHHHTS-CH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc----hHHHHHHHHHHHHHcc-CH
Confidence            3567889999999999999999999999999998   6669999999999988 632    1234456999999999 99


Q ss_pred             HHHHHHHHHhhhhh
Q 029491          113 RKVLEIYDNHIWKE  126 (192)
Q Consensus       113 deAl~~yd~~i~~~  126 (192)
                      ++|++.+++.+..+
T Consensus        88 ~~A~~y~~~lL~ie  101 (152)
T 1pc2_A           88 EKALKYVRGLLQTE  101 (152)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999999985

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.93  E-value=0.00011  Score=73.95  Aligned_cols=106  Identities=7%  Similarity=-0.022  Sum_probs=86.8

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC--------------------------
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH--------------------------   54 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~--------------------------   54 (192)
                      .|++.+|++++.++     +++..+...+.++.+.|+|++|.+.+..|...+|.                          
T Consensus      1118 ~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~ 1192 (1630)
T 1xi4_A         1118 KGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFING 1192 (1630)
T ss_pred             CCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhC
Confidence            48888999999876     77888888899999999999999888887765533                          


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           55 -DCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        55 -da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                       +...+..+|..++..|++++|+.+|.++             .+|..+|.++..+| ++++|++.|+++..+
T Consensus      1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------------~ny~rLA~tLvkLg-e~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A         1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------------SNFGRLASTLVHLG-EYQAAVDGARKANST 1250 (1630)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------------hHHHHHHHHHHHhC-CHHHHHHHHHHhCCH
Confidence             2345667899999999999999999885             15667999999999 899999999988655

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.85  E-value=0.00011  Score=51.87  Aligned_cols=69  Identities=7%  Similarity=-0.137  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhccc-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCC
Q 029491           22 DFIFGILAFSLLELGQMSDAEEAAKKGLKIN-------KHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS   90 (192)
Q Consensus        22 ~~~~~~laf~L~e~g~~~eAe~~~rrALaL~-------P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~   90 (192)
                      +.-+..+|..+.+.|+|.+|+.-+++|+.+.       +..+..+..+|.++..+|++++|+..+++++.+.|+++
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~   80 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence            3445567778889999999999999999974       34578899999999999999999999999999998864

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.85  E-value=0.00016  Score=61.23  Aligned_cols=124  Identities=7%  Similarity=-0.101  Sum_probs=99.0

Q ss_pred             CChHHHHHHHHhhcCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------cCCCHHHHHHHHHHHHhc
Q 029491            2 GRPDLCFDIIHQVLPY------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI------NKHDCWSQHALCHVLQHD   69 (192)
Q Consensus         2 G~~~~al~~~~ral~~------~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL------~P~da~A~h~lahvl~~~   69 (192)
                      |+.+.+...+++++..      .+....++..+|.++.+.|+|++|....++++..      +|..+.++..++.++..+
T Consensus       109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (434)
T 4b4t_Q          109 DSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKL  188 (434)
T ss_dssp             SCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHh
Confidence            5667777777776654      2344678889999999999999999999999886      456678999999999999


Q ss_pred             CCHHHHHHHHHHhHhhccCCCCc--chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           70 CCFKEAVQFMEECSSTWSSCSSF--MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        70 Gr~~eai~~~~~a~~~~p~~~~~--~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      |++++|...+++++...+..+..  ......-..+..+...| +|++|...|..++...
T Consensus       189 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~y~~A~~~~~~a~~~~  246 (434)
T 4b4t_Q          189 RNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDK-DYKTAFSYFFESFESY  246 (434)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHh
Confidence            99999999999999887664321  12334456788888888 9999999998887653

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.84  E-value=0.00015  Score=62.11  Aligned_cols=113  Identities=11%  Similarity=0.090  Sum_probs=89.8

Q ss_pred             HHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 029491            7 CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINK--HDCWSQHALCHVLQHDCCFKEAVQFMEECSS   84 (192)
Q Consensus         7 al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P--~da~A~h~lahvl~~~Gr~~eai~~~~~a~~   84 (192)
                      ++..+++.+...+.+...+.++|.++...|++++|.+.+.++|..+|  ++..+...++.++..+||+++|...+++..+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            34556667766566677778999999999999999999999999997  9999999999999999999999999999988


Q ss_pred             hcc-----CCCCcchhhhHHHHHHH--HH-hCCCCHHHHHHHHHHhhhh
Q 029491           85 TWS-----SCSSFMYTHNWWHVALC--YL-EGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        85 ~~p-----~~~~~~~~h~~WhlAl~--~l-~~G~~~deAl~~yd~~i~~  125 (192)
                      ..|     ++..  .  .  .++.+  .+ ..|+++.+|..+|++....
T Consensus       165 ~~~d~~~~~d~~--l--~--~Laea~v~l~~g~~~~q~A~~~f~El~~~  207 (310)
T 3mv2_B          165 AIEDTVSGDNEM--I--L--NLAESYIKFATNKETATSNFYYYEELSQT  207 (310)
T ss_dssp             HSCHHHHHHHHH--H--H--HHHHHHHHHHHTCSTTTHHHHHHHHHHTT
T ss_pred             cCccccccchHH--H--H--HHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence            877     2221  1  2  24433  32 2334899999999996544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.81  E-value=6.7e-06  Score=73.87  Aligned_cols=104  Identities=9%  Similarity=0.073  Sum_probs=43.4

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      +|++++++...+.+...-++ +.+...+++++..+|+++++++.++     .|+. .++..+|..+...|++++|+.+|.
T Consensus        74 ~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~-~a~~~IGd~~~~~g~yeeA~~~Y~  146 (449)
T 1b89_A           74 SGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GPNN-AHIQQVGDRCYDEKMYDAAKLLYN  146 (449)
T ss_dssp             ------------------------------------CHHHHTTTTT-----CC-----------------CTTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CCcH-HHHHHHHHHHHHcCCHHHHHHHHH
Confidence            36777777777777764333 6777778888888888888777764     2544 499999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      ++             .+|..+|.++..+| +|++|++.|+++-.+
T Consensus       147 ~a-------------~n~~~LA~~L~~Lg-~yq~AVea~~KA~~~  177 (449)
T 1b89_A          147 NV-------------SNFGRLASTLVHLG-EYQAAVDGARKANST  177 (449)
T ss_dssp             HT-------------TCHHHHHHHHHTTT-CHHHHHHHHHHHTCH
T ss_pred             Hh-------------hhHHHHHHHHHHhc-cHHHHHHHHHHcCCc
Confidence            66             15567999999999 999999999998544

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.64  E-value=0.001  Score=62.37  Aligned_cols=74  Identities=14%  Similarity=-0.041  Sum_probs=33.7

Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 029491           10 IIHQVLPYNQQEDFIFGILAFSLLELGQMSDAE-EAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECS   83 (192)
Q Consensus        10 ~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe-~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~   83 (192)
                      .+++++...|.++.++.+++--+...|+.++|. ..+.+|+..+|.+...+...+...+..|+++++...|++++
T Consensus       331 ~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l  405 (679)
T 4e6h_A          331 VYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI  405 (679)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            344444444444444444444444444444443 44444444444444444444444444444444444444444

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.56  E-value=0.00076  Score=63.24  Aligned_cols=153  Identities=8%  Similarity=0.016  Sum_probs=111.6

Q ss_pred             CChHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----------cCC-----------CHHH
Q 029491            2 GRPDLCF-DIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI-----------NKH-----------DCWS   58 (192)
Q Consensus         2 G~~~~al-~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL-----------~P~-----------da~A   58 (192)
                      |+.++++ ..++|++...|.+..++..++...+..|++++|.+.+++++..           .|.           .+.+
T Consensus       357 ~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v  436 (679)
T 4e6h_A          357 NTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV  436 (679)
T ss_dssp             SCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence            5566786 9999999999999999999999999999999999999999985           253           3557


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHH
Q 029491           59 QHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVY  138 (192)
Q Consensus        59 ~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~  138 (192)
                      +-..+......|..++|...+.+|+..   .+. ...+.+...|......|++++.|..+|++.+..-  +.   .....
T Consensus       437 Wi~y~~~erR~~~l~~AR~vf~~A~~~---~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~---~~~~w  507 (679)
T 4e6h_A          437 YCVYMNTMKRIQGLAASRKIFGKCRRL---KKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--AT---DGEYI  507 (679)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHT---GGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TT---CHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh---cCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CC---chHHH
Confidence            888888888999999999999999876   243 2345554455555555536999999999999984  32   12333


Q ss_pred             HHHHHHHHHhhhcCcccchhchHHHHHHHHhh
Q 029491          139 LNALGLLLRVYVRGELDVFGNRLKVLADCVAD  170 (192)
Q Consensus       139 ~da~sLL~Rl~l~g~~~~~~~rw~~l~~~~~~  170 (192)
                      +.-+.+++.+   |.    .++=..+.+....
T Consensus       508 ~~y~~fe~~~---~~----~~~AR~lferal~  532 (679)
T 4e6h_A          508 NKYLDFLIYV---NE----ESQVKSLFESSID  532 (679)
T ss_dssp             HHHHHHHHHH---TC----HHHHHHHHHHHTT
T ss_pred             HHHHHHHHhC---CC----HHHHHHHHHHHHH
Confidence            4455555543   32    2344455554444

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.53  E-value=0.00036  Score=62.62  Aligned_cols=101  Identities=16%  Similarity=0.146  Sum_probs=53.0

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |++++|...+.++        ..+..+|.+|...|+|++|++++++|     +++.++..++.++...|+++.|......
T Consensus       136 g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~  202 (449)
T 1b89_A          136 KMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH  202 (449)
T ss_dssp             -CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT
T ss_pred             CCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH
Confidence            4555555555554        23455666666666666666666666     3555666666666666666555443332


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                       +-..|+.        ..-+..+|...| ++++++.++++++..
T Consensus       203 -L~~~ad~--------l~~lv~~Yek~G-~~eEai~lLe~aL~l  236 (449)
T 1b89_A          203 -IVVHADE--------LEELINYYQDRG-YFEELITMLEAALGL  236 (449)
T ss_dssp             -TTTCHHH--------HHHHHHHHHHTT-CHHHHHHHHHHHTTS
T ss_pred             -HHhCHhh--------HHHHHHHHHHCC-CHHHHHHHHHHHhCC
Confidence             2222221        111333445555 666666666666554

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.37  E-value=0.00085  Score=50.30  Aligned_cols=85  Identities=11%  Similarity=0.020  Sum_probs=72.6

Q ss_pred             CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhHhhc-cCCCCcchhhhHHHHHHHHHhCCCCH
Q 029491           37 QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKE---AVQFMEECSSTW-SSCSSFMYTHNWWHVALCYLEGHSPM  112 (192)
Q Consensus        37 ~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~e---ai~~~~~a~~~~-p~~~~~~~~h~~WhlAl~~l~~G~~~  112 (192)
                      ....++..+.++++.++.+..+.+++|+++.......+   ||..++..++.. |..    .-..-..+|+.++.+| +|
T Consensus        16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~----~Rd~lY~LAvg~yklg-~Y   90 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE----QRDYVFYLAVGNYRLK-EY   90 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH----HHHHHHHHHHHHHHTT-CH
T ss_pred             HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcch----HHHHHHHHHHHHHHhh-hH
Confidence            45668888999999999999999999999999999988   999999999876 421    2223446999999999 99


Q ss_pred             HHHHHHHHHhhhhh
Q 029491          113 RKVLEIYDNHIWKE  126 (192)
Q Consensus       113 deAl~~yd~~i~~~  126 (192)
                      ++|+...+..+..+
T Consensus        91 ~~A~~~~~~lL~~e  104 (126)
T 1nzn_A           91 EKALKYVRGLLQTE  104 (126)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999999885

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.16  E-value=0.003  Score=49.47  Aligned_cols=98  Identities=14%  Similarity=0.015  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHhHhhcc---CCC-
Q 029491           24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW---------SQHALCHVLQHDCCFKEAVQFMEECSSTWS---SCS-   90 (192)
Q Consensus        24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~---------A~h~lahvl~~~Gr~~eai~~~~~a~~~~p---~~~-   90 (192)
                      ++.--.-.+.+.|.|+-|+-.+..++++..+++.         +...+|.+++.+|.+..|...|++++..-.   ..+ 
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            3333444678999999999999999998877776         889999999999999999999999874322   111 


Q ss_pred             ----------------CcchhhhHHHHHHHHHhCCCCHHHHHHHHHHh
Q 029491           91 ----------------SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNH  122 (192)
Q Consensus        91 ----------------~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~  122 (192)
                                      .+-....-+.+|.||+++| ++++|+...+..
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~-~~~~Ai~~Le~I  148 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLK-QDKDAIAILDGI  148 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTT-CHHHHHHHHHTS
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHC-CHHHHHHHHhcC
Confidence                            0112345567999999999 999999998664

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.99  E-value=0.0073  Score=54.01  Aligned_cols=115  Identities=11%  Similarity=0.089  Sum_probs=87.5

Q ss_pred             HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHH-------------------
Q 029491            5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHV-------------------   65 (192)
Q Consensus         5 ~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahv-------------------   65 (192)
                      ......+++++...|.++.++.+++--+...|+.++|...++||+.. |++...+...+..                   
T Consensus       196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~  274 (493)
T 2uy1_A          196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEA  274 (493)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhcc
Confidence            34567899999999999999999999999999999999999999999 9987655443332                   


Q ss_pred             ---------------------HHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhh
Q 029491           66 ---------------------LQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW  124 (192)
Q Consensus        66 ---------------------l~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~  124 (192)
                                           ....|..+.|...++++  ..|..    ..|.|.-.|......|++.+.|..+|+..+.
T Consensus       275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A--~~~~~----~~~v~i~~A~lE~~~~~d~~~ar~ife~al~  348 (493)
T 2uy1_A          275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL--GNEGV----GPHVFIYCAFIEYYATGSRATPYNIFSSGLL  348 (493)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH--TTSCC----CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred             chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh--hCCCC----ChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence                                 11256688888889988  33432    3466655565555455369999999999998


Q ss_pred             hh
Q 029491          125 KE  126 (192)
Q Consensus       125 ~~  126 (192)
                      .-
T Consensus       349 ~~  350 (493)
T 2uy1_A          349 KH  350 (493)
T ss_dssp             HC
T ss_pred             HC
Confidence            63

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.83  E-value=0.011  Score=51.44  Aligned_cols=83  Identities=11%  Similarity=-0.073  Sum_probs=54.8

Q ss_pred             CChHHHHHHHHhhcCCCCCCH--------HH--------------HHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQED--------FI--------------FGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ   59 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~--------~~--------------~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~   59 (192)
                      |+.+++.+.+++|+.+|.+..        ++              .-.++-.+.+.|++++|...++++++.+|-+-.++
T Consensus       129 ~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~  208 (388)
T 2ff4_A          129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLW  208 (388)
T ss_dssp             TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            567788888999999874321        11              11233344556777777777777777777777777


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhHh
Q 029491           60 HALCHVLQHDCCFKEAVQFMEECSS   84 (192)
Q Consensus        60 h~lahvl~~~Gr~~eai~~~~~a~~   84 (192)
                      ..+-.++...||..+|++.|++..+
T Consensus       209 ~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          209 TQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            7777777777777777777766654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.57  E-value=0.015  Score=52.05  Aligned_cols=113  Identities=4%  Similarity=-0.092  Sum_probs=81.0

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHH----------------------------------------HHHcCCHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFS----------------------------------------LLELGQMSDA   41 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~----------------------------------------L~e~g~~~eA   41 (192)
                      |+.++++..++|++.. |.+...+..++..                                        +...+..++|
T Consensus       227 ~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~A  305 (493)
T 2uy1_A          227 GQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELF  305 (493)
T ss_dssp             TCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             CCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHH
Confidence            6788888888888888 8775444433322                                        2236678999


Q ss_pred             HHHHHHHhcccCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHH
Q 029491           42 EEAAKKGLKINKHDCWSQHALCHVLQHDC-CFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD  120 (192)
Q Consensus        42 e~~~rrALaL~P~da~A~h~lahvl~~~G-r~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd  120 (192)
                      ...+.+| ...+.....+-..+..-...| +.+.|...+++++...|+.+     ..||-.+-+....| +.+.|..+|+
T Consensus       306 R~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~-----~~~~~yid~e~~~~-~~~~aR~l~e  378 (493)
T 2uy1_A          306 RKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDST-----LLKEEFFLFLLRIG-DEENARALFK  378 (493)
T ss_dssp             HHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHT-CHHHHHHHHH
T ss_pred             HHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHcC-CHHHHHHHHH
Confidence            9999999 433334444444455555555 59999999999999887743     25666777777888 8999999998


Q ss_pred             Hh
Q 029491          121 NH  122 (192)
Q Consensus       121 ~~  122 (192)
                      +.
T Consensus       379 r~  380 (493)
T 2uy1_A          379 RL  380 (493)
T ss_dssp             HS
T ss_pred             HH
Confidence            86

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.42  E-value=0.19  Score=44.92  Aligned_cols=119  Identities=7%  Similarity=-0.023  Sum_probs=56.2

Q ss_pred             CChHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhcc--cCCCHHHHHHHHHHHHh
Q 029491            2 GRPDLCFDIIHQVLPY--NQQEDFIFGILAFSLLEL---------GQMSDAEEAAKKGLKI--NKHDCWSQHALCHVLQH   68 (192)
Q Consensus         2 G~~~~al~~~~ral~~--~p~~~~~~~~laf~L~e~---------g~~~eAe~~~rrALaL--~P~da~A~h~lahvl~~   68 (192)
                      |+.++|+..+.+....  .|+ ...++.+=.++...         +.+++|.+++++-...  .| |...+.++-..+..
T Consensus        40 G~~~~A~~lf~~M~~~Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-d~~tyn~lI~~~~~  117 (501)
T 4g26_A           40 GDVLEALRLYDEARRNGVQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP-NEATFTNGARLAVA  117 (501)
T ss_dssp             CCHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHh
Confidence            5666666666655442  232 22333222222222         2245565555554332  23 44566666666666


Q ss_pred             cCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhh
Q 029491           69 DCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL  127 (192)
Q Consensus        69 ~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~  127 (192)
                      .|+.++|+..+++.....-. |. ....+.  +=..+...| +.++|.++|+.......
T Consensus       118 ~g~~~~A~~l~~~M~~~g~~-Pd-~~tyn~--lI~~~~~~g-~~~~A~~l~~~M~~~G~  171 (501)
T 4g26_A          118 KDDPEMAFDMVKQMKAFGIQ-PR-LRSYGP--ALFGFCRKG-DADKAYEVDAHMVESEV  171 (501)
T ss_dssp             HTCHHHHHHHHHHHHHTTCC-CC-HHHHHH--HHHHHHHTT-CHHHHHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHHHHHcCCC-Cc-cceehH--HHHHHHHCC-CHHHHHHHHHHHHhcCC
Confidence            66666666666665543211 11 011111  222233445 66666666666655543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.28  E-value=0.1  Score=46.74  Aligned_cols=120  Identities=10%  Similarity=-0.103  Sum_probs=88.1

Q ss_pred             hHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--cCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            4 PDLCFDIIHQVLPY-NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI--NKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         4 ~~~al~~~~ral~~-~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL--~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .++|.+.+.+.... -+-|...++.+--++...|++++|++.+++-...  .| |...+..+-..+...|+.++|...++
T Consensus        86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~  164 (501)
T 4g26_A           86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDA  164 (501)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHH
Confidence            45566666654442 1235667788888899999999999999987664  45 57789999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCC
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEK  129 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~  129 (192)
                      +....--. |. ....+.  +=.++...| +.++|.+++++.......|
T Consensus       165 ~M~~~G~~-Pd-~~ty~~--Li~~~~~~g-~~d~A~~ll~~Mr~~g~~p  208 (501)
T 4g26_A          165 HMVESEVV-PE-EPELAA--LLKVSMDTK-NADKVYKTLQRLRDLVRQV  208 (501)
T ss_dssp             HHHHTTCC-CC-HHHHHH--HHHHHHHTT-CHHHHHHHHHHHHHHTSSB
T ss_pred             HHHhcCCC-CC-HHHHHH--HHHHHhhCC-CHHHHHHHHHHHHHhCCCc
Confidence            98865333 22 122222  444556778 9999999999987765434

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.20  E-value=0.019  Score=42.82  Aligned_cols=85  Identities=9%  Similarity=-0.137  Sum_probs=73.8

Q ss_pred             HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHhccc-C-CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 029491            5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSD---AEEAAKKGLKIN-K-HDCWSQHALCHVLQHDCCFKEAVQFM   79 (192)
Q Consensus         5 ~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~e---Ae~~~rrALaL~-P-~da~A~h~lahvl~~~Gr~~eai~~~   79 (192)
                      ..+.+.+.+.++..+........+|++|........   ++.+.+..+.-+ | +.-..+..+|..++..|++++|+.++
T Consensus        18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~   97 (126)
T 1nzn_A           18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV   97 (126)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            345666777777777888999999999999887666   999999999887 6 67889999999999999999999999


Q ss_pred             HHhHhhccCC
Q 029491           80 EECSSTWSSC   89 (192)
Q Consensus        80 ~~a~~~~p~~   89 (192)
                      +..++..|++
T Consensus        98 ~~lL~~eP~n  107 (126)
T 1nzn_A           98 RGLLQTEPQN  107 (126)
T ss_dssp             HHHHHHCTTC
T ss_pred             HHHHHhCCCC
Confidence            9999999885

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.06  E-value=0.015  Score=45.47  Aligned_cols=60  Identities=15%  Similarity=0.036  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhcccC-------------------------CCHHHHHHHHHHHHhcCCHHHHHH
Q 029491           23 FIFGILAFSLLELGQMSDAEEAAKKGLKINK-------------------------HDCWSQHALCHVLQHDCCFKEAVQ   77 (192)
Q Consensus        23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P-------------------------~da~A~h~lahvl~~~Gr~~eai~   77 (192)
                      .++.++|.++...|+|.+|+..+++||.+..                         .+...-.-++.++...|++++||.
T Consensus        64 ~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~  143 (167)
T 3ffl_A           64 QLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIA  143 (167)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHH
Confidence            4889999999999999999999999977652                         122577889999999999999999


Q ss_pred             HHHHh
Q 029491           78 FMEEC   82 (192)
Q Consensus        78 ~~~~a   82 (192)
                      .++..
T Consensus       144 ~Le~I  148 (167)
T 3ffl_A          144 ILDGI  148 (167)
T ss_dssp             HHHTS
T ss_pred             HHhcC
Confidence            99874

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.97  E-value=0.018  Score=44.63  Aligned_cols=98  Identities=12%  Similarity=-0.005  Sum_probs=80.5

Q ss_pred             HHHHHHHHhhcCCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHH
Q 029491            5 DLCFDIIHQVLPYNQ--------QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAV   76 (192)
Q Consensus         5 ~~al~~~~ral~~~p--------~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai   76 (192)
                      .+.++.++||+..-|        .+.+.+-.+|. +.+.++.++|.+.++.++.+....+-.|-..|+--..+|..+.|.
T Consensus        36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kAR  114 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSK  114 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHH
Confidence            778889999887554        34577777774 478899999999999999999999999999999999999999999


Q ss_pred             HHHHHhHhhccCCCCcchhhhHHHHHHHHHhCC
Q 029491           77 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGH  109 (192)
Q Consensus        77 ~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G  109 (192)
                      ..+.+++...|....      -...|+.-|..|
T Consensus       115 kILg~AiG~~~k~~~------~le~a~~nl~~~  141 (161)
T 4h7y_A          115 QLLQKAVERGAVPLE------MLEIALRNLNLQ  141 (161)
T ss_dssp             HHHHHHHHTTCBCHH------HHHHHHHHHHTT
T ss_pred             HHHHHHhccCCCcHH------HHHHHHHhhhcC
Confidence            999999999887321      123677777776

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=94.92  E-value=0.23  Score=37.76  Aligned_cols=80  Identities=8%  Similarity=-0.055  Sum_probs=61.6

Q ss_pred             HHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHH
Q 029491           41 AEEAAKKGLKINKHDCWSQHALCHVLQHDCCFK---EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLE  117 (192)
Q Consensus        41 Ae~~~rrALaL~P~da~A~h~lahvl~~~Gr~~---eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~  117 (192)
                      .++.+.+-+. ++-++.+.++.|++|......+   +||..++...+..|...    -..-..+|+.++.+| +|++|++
T Consensus        25 lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~----RdcLYyLAvg~ykl~-~Y~~Ar~   98 (144)
T 1y8m_A           25 LRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR----RECLYYLTIGCYKLG-EYSMAKR   98 (144)
T ss_dssp             HHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTH----HHHHHHHHHHHHTTT-CHHHHHH
T ss_pred             HHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccch----hHHHHHHHHHHHHhh-hHHHHHH
Confidence            3444444322 3668899999999999988765   79999999999877532    223345999999999 9999999


Q ss_pred             HHHHhhhhh
Q 029491          118 IYDNHIWKE  126 (192)
Q Consensus       118 ~yd~~i~~~  126 (192)
                      ..+..+..+
T Consensus        99 y~d~lL~~e  107 (144)
T 1y8m_A           99 YVDTLFEHE  107 (144)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHhcC
Confidence            999999885

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.47  E-value=0.36  Score=41.67  Aligned_cols=86  Identities=10%  Similarity=0.032  Sum_probs=66.6

Q ss_pred             HHcCCHHHHHHHHHHHhcccC--------CCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHhHhhccCCC
Q 029491           33 LELGQMSDAEEAAKKGLKINK--------HDCWSQ--------------HALCHVLQHDCCFKEAVQFMEECSSTWSSCS   90 (192)
Q Consensus        33 ~e~g~~~eAe~~~rrALaL~P--------~da~A~--------------h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~   90 (192)
                      ...|+.++|.+.+++||++=.        ...|+.              ..++..+...|++++++..+++.+..+|-.-
T Consensus       126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E  205 (388)
T 2ff4_A          126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYRE  205 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            346899999999999999853        233432              3566778899999999999999999988743


Q ss_pred             CcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhh
Q 029491           91 SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW  124 (192)
Q Consensus        91 ~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~  124 (192)
                         .  .+-.+-.++...| +..+|++.|++...
T Consensus       206 ---~--~~~~lm~al~~~G-r~~~Al~~y~~~r~  233 (388)
T 2ff4_A          206 ---P--LWTQLITAYYLSD-RQSDALGAYRRVKT  233 (388)
T ss_dssp             ---H--HHHHHHHHHHTTT-CHHHHHHHHHHHHH
T ss_pred             ---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence               2  3334667777888 99999999987654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=94.46  E-value=0.27  Score=36.92  Aligned_cols=79  Identities=8%  Similarity=-0.045  Sum_probs=60.3

Q ss_pred             HHHHHHHHhcccCC-CHHHHHHHHHHHHhcCCH---HHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHH
Q 029491           41 AEEAAKKGLKINKH-DCWSQHALCHVLQHDCCF---KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVL  116 (192)
Q Consensus        41 Ae~~~rrALaL~P~-da~A~h~lahvl~~~Gr~---~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl  116 (192)
                      .++.+.+=+  +|. ++.+.++.|+++......   .+||..++...+..|..    .-...+.+|+.++.+| +|++|+
T Consensus        26 l~~qy~~E~--~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~----~Rd~LYyLAvg~yklg-dY~~Ar   98 (134)
T 3o48_A           26 LRQQVVSEG--GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR----RRECLYYLTIGCYKLG-EYSMAK   98 (134)
T ss_dssp             HHHHHHHTT--GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHHHHHT-CHHHHH
T ss_pred             HHHHHHHHh--CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch----hHHHHHHHHHHHHHhh-hHHHHH
Confidence            344454433  333 788999999999988776   36999999999877642    2345567999999998 899999


Q ss_pred             HHHHHhhhhh
Q 029491          117 EIYDNHIWKE  126 (192)
Q Consensus       117 ~~yd~~i~~~  126 (192)
                      +..+..+..+
T Consensus        99 ~y~d~lL~~e  108 (134)
T 3o48_A           99 RYVDTLFEHE  108 (134)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHhhC
Confidence            9999988875

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.20  E-value=0.39  Score=37.14  Aligned_cols=103  Identities=11%  Similarity=0.035  Sum_probs=80.4

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHhcccCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491           17 YNQQEDFIFGILAFSLLELGQM------SDAEEAAKKGLKINKHDC--------WSQHALCHVLQHDCCFKEAVQFMEEC   82 (192)
Q Consensus        17 ~~p~~~~~~~~laf~L~e~g~~------~eAe~~~rrALaL~P~da--------~A~h~lahvl~~~Gr~~eai~~~~~a   82 (192)
                      ..|.++..+..+.--++..|+.      ++=.+.++||++--|-+-        ..+-..| .+...++.++|...|+.+
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~a   86 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQMA   86 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHH
Confidence            4577888888888889999998      888999999999887642        2222233 235569999999999999


Q ss_pred             HhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        83 ~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +.+   +..|  +.+|-..|.+.+..| +.+.|..+..++|...
T Consensus        87 ~~~---hKkF--AKiwi~~AqFEiRqg-nl~kARkILg~AiG~~  124 (161)
T 4h7y_A           87 RAN---CKKF--AFVHISFAQFELSQG-NVKKSKQLLQKAVERG  124 (161)
T ss_dssp             HHH---CTTB--HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTT
T ss_pred             HHH---hHHH--HHHHHHHHHHHHHcc-cHHHHHHHHHHHhccC
Confidence            987   4556  566667888889998 8999999999999863

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=93.31  E-value=1.2  Score=40.32  Aligned_cols=45  Identities=20%  Similarity=0.234  Sum_probs=28.3

Q ss_pred             HHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491           33 LELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC   82 (192)
Q Consensus        33 ~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a   82 (192)
                      .+.|++++|.+.++     ..++...+..+|.....+|+++.|+..|.++
T Consensus       663 l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          663 LKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            45666666666643     2355566666666666666666666666664

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=92.83  E-value=0.26  Score=37.05  Aligned_cols=70  Identities=7%  Similarity=-0.165  Sum_probs=56.4

Q ss_pred             CHHHHHHHHHHHHHcCCH---HHHHHHHHHHhcccC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCC
Q 029491           21 EDFIFGILAFSLLELGQM---SDAEEAAKKGLKINK-HDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS   90 (192)
Q Consensus        21 ~~~~~~~laf~L~e~g~~---~eAe~~~rrALaL~P-~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~   90 (192)
                      .+.....+|++|......   .+++.+.+..+.-+| +.-.-+.-+|..+...|++++|..+.+..++..|++.
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~  112 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  112 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence            467778888888887754   358888888888888 4567788888888889999999999999999888864

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=92.81  E-value=1.7  Score=36.25  Aligned_cols=116  Identities=10%  Similarity=0.048  Sum_probs=75.5

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |+.++++..+...+...|.|+.....+---|+-+|++++|....+-+.+++|...-.....-+...       |...=++
T Consensus        11 g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~-------aE~~R~~   83 (273)
T 1zbp_A           11 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK-------AAQARKD   83 (273)
T ss_dssp             TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH-------HHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH-------HHHHHHH
Confidence            677888888888888899998888888888888999999999999999999887655444322211       1111111


Q ss_pred             hHhhccCCCCcchhhhHH----HHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           82 CSSTWSSCSSFMYTHNWW----HVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~W----hlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .+..... |.++....-|    .-|+..+..| +.++|.++-+++....
T Consensus        84 vfaG~~~-P~~~g~~~~w~~~ll~Al~~~~~G-~~~~A~~lr~~A~e~a  130 (273)
T 1zbp_A           84 FAQGAAT-AKVLGENEELTKSLVSFNLSMVSQ-DYEQVSELALQIEELR  130 (273)
T ss_dssp             HTTSCCC-EECCCSCHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHC
T ss_pred             HHcCCCC-CCCCCCCHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHhcC
Confidence            1211100 1111112223    4566666678 8999999988886663

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=92.54  E-value=0.22  Score=37.92  Aligned_cols=72  Identities=7%  Similarity=-0.157  Sum_probs=62.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHhcccC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCC
Q 029491           19 QQEDFIFGILAFSLLELGQMS---DAEEAAKKGLKINK-HDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS   90 (192)
Q Consensus        19 p~~~~~~~~laf~L~e~g~~~---eAe~~~rrALaL~P-~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~   90 (192)
                      .-.+.....+|++|.....-+   +++.+.+..+.-.| +.-.-+.-+|-.++..|++++|..+.+..++..|++.
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~  111 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  111 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence            456788899999999887554   58889999998888 5668899999999999999999999999999999964

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=92.49  E-value=0.3  Score=46.37  Aligned_cols=59  Identities=14%  Similarity=0.075  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491           24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC   82 (192)
Q Consensus        24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a   82 (192)
                      .+..-+--|...|+|+-|.+++++|+.+.|.+-..|..|+.|+..+|+++.|+-.+..+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            34444555667899999999999999999999999999999999999999999999887

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=91.40  E-value=0.61  Score=42.04  Aligned_cols=61  Identities=10%  Similarity=-0.038  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 029491           24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSS   84 (192)
Q Consensus        24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~   84 (192)
                      .+-.+|..-.-...++.|+..|++|+.++|++...+|-+|.+...+|+.-+++-+|.+++-
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~  214 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence            3345666666677788999999999999999999999999999999999999999998874

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=89.71  E-value=1.4  Score=41.78  Aligned_cols=112  Identities=13%  Similarity=0.219  Sum_probs=75.8

Q ss_pred             HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHhc--------ccCCCH----------HHHHHHHH
Q 029491            5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLEL-G-QMSDAEEAAKKGLK--------INKHDC----------WSQHALCH   64 (192)
Q Consensus         5 ~~al~~~~ral~~~p~~~~~~~~laf~L~e~-g-~~~eAe~~~rrALa--------L~P~da----------~A~h~lah   64 (192)
                      +.++..+++....+|.....+...-....+. + +=-+|.....+++.        +++.+.          ..++.-+-
T Consensus       266 ~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~  345 (754)
T 4gns_B          266 DFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTN  345 (754)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHH
Confidence            5577777777777786554333222222222 2 23346666666663        445553          34555566


Q ss_pred             HHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHh
Q 029491           65 VLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNH  122 (192)
Q Consensus        65 vl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~  122 (192)
                      -+..+|+++-|+....++...-|..  |   -.|-.||.+|..+| +|+.|+-.....
T Consensus       346 FLl~K~~~elAL~~Ak~AV~~aPse--F---~tW~~La~vYi~l~-d~e~ALLtLNSc  397 (754)
T 4gns_B          346 FLLNRGDYELALGVSNTSTELALDS--F---ESWYNLARCHIKKE-EYEKALFAINSM  397 (754)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCSSC--H---HHHHHHHHHHHHTT-CHHHHHHHHHHS
T ss_pred             HHhccCcHHHHHHHHHHHHhcCchh--h---HHHHHHHHHHHHhc-cHHHHHHHHhcC
Confidence            6777899999999999999998883  3   36778999999999 999999776443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=89.40  E-value=0.88  Score=38.06  Aligned_cols=59  Identities=19%  Similarity=0.202  Sum_probs=56.0

Q ss_pred             HHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCC
Q 029491           31 SLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC   89 (192)
Q Consensus        31 ~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~   89 (192)
                      .+...|.+++|.+.....|.-+|.|+..-..+-..|+..|+.+.|..-++.+..+.|..
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~   64 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY   64 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence            45678999999999999999999999999999999999999999999999999999884

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=86.88  E-value=1.7  Score=42.65  Aligned_cols=149  Identities=10%  Similarity=-0.034  Sum_probs=90.7

Q ss_pred             hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-ccCC----------------------CHHHHHHHHHHHHhcC
Q 029491           14 VLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK-INKH----------------------DCWSQHALCHVLQHDC   70 (192)
Q Consensus        14 al~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALa-L~P~----------------------da~A~h~lahvl~~~G   70 (192)
                      .++..|.++..-.++|.++..+|++++|...+++|-. +.++                      -+.=+.-+...++..|
T Consensus       834 l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~  913 (1139)
T 4fhn_B          834 LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES  913 (1139)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTS
T ss_pred             HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcC
Confidence            3455677888889999999999999999999999832 1111                      1112344667888999


Q ss_pred             CHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHH----HhhhhhhCCCCCCChHHHH--HHHHH
Q 029491           71 CFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD----NHIWKELEKPDAVHPEVYL--NALGL  144 (192)
Q Consensus        71 r~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd----~~i~~~~~~~~~~~~~~~~--da~sL  144 (192)
                      .++.++.+...|+..-+..+.-+....|-.+=.++++.| +|++|-...-    ..+...+-+   .....++  +..+.
T Consensus       914 ~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~-~ye~Ay~aL~~~pd~~~r~~cLr---~LV~~lce~~~~~~  989 (1139)
T 4fhn_B          914 AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG-KFDAAHVALMVLSTTPLKKSCLL---DFVNQLTKQGKINQ  989 (1139)
T ss_dssp             CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHC-CSGGGGHHHHHHHHSSSCHHHHH---HHHHHHHHHCCHHH
T ss_pred             CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhC-CHHHHHHHHHhCCCHHHHHHHHH---HHHHHHHhCCChhh
Confidence            999999999999976554332112222223444567888 8999865542    222221100   0001111  45677


Q ss_pred             HHHhhhcCcccchhchHHHHHH
Q 029491          145 LLRVYVRGELDVFGNRLKVLAD  166 (192)
Q Consensus       145 L~Rl~l~g~~~~~~~rw~~l~~  166 (192)
                      |..+.+.|--..|.+-....|.
T Consensus       990 L~~lpf~gl~~~Vd~IL~~kAr 1011 (1139)
T 4fhn_B          990 LLNYSMPTLRQDVDNLLERKAF 1011 (1139)
T ss_dssp             HHHHTTTSCHHHHHHHHHHHHH
T ss_pred             hhCCCCccHHHHHHHHHHHHHH
Confidence            8888887764444544444443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=86.22  E-value=14  Score=36.68  Aligned_cols=102  Identities=9%  Similarity=-0.105  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhcc----cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhH
Q 029491           23 FIFGILAFSLLELGQMSDAEEAAKKGLKI----NKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNW   98 (192)
Q Consensus        23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL----~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~   98 (192)
                      ..++.+=.++...|++++|.+++++--..    -.-|...+.++-+.+...|+.+||+..+++....--. |. ..+.+.
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~-PD-vvTYnt  205 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT-PD-LLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC-CC-HHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-Cc-HHHHHH
Confidence            45677777999999999999999654322    1336789999999999999999999999998865333 22 233333


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHhhhhhhC
Q 029491           99 WHVALCYLEGHSPMRKVLEIYDNHIWKELE  128 (192)
Q Consensus        99 WhlAl~~l~~G~~~deAl~~yd~~i~~~~~  128 (192)
                      -=-+++  ..|...++|..+++......+.
T Consensus       206 LI~glc--K~G~~~e~A~~Ll~EM~~kG~~  233 (1134)
T 3spa_A          206 ALQCMG--RQDQDAGTIERCLEQMSQEGLK  233 (1134)
T ss_dssp             HHHHHH--HHTCCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHH--hCCCcHHHHHHHHHHHHHcCCC
Confidence            222333  3452357899999999988653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=83.37  E-value=3.7  Score=37.13  Aligned_cols=73  Identities=16%  Similarity=0.108  Sum_probs=47.8

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--------hcccCCCHHHHHHHHHHHHhcCCHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKG--------LKINKHDCWSQHALCHVLQHDCCFK   73 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrA--------LaL~P~da~A~h~lahvl~~~Gr~~   73 (192)
                      |++++|++.+.     ..++...+..+|-...+.|+++.|+.++.++        |....++...+-.+++.....|++.
T Consensus       666 ~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~  740 (814)
T 3mkq_A          666 GQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFN  740 (814)
T ss_dssp             TCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHH
T ss_pred             CCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchH
Confidence            45555555443     3366788899999999999999999999986        2222444445555555555555555


Q ss_pred             HHHHHH
Q 029491           74 EAVQFM   79 (192)
Q Consensus        74 eai~~~   79 (192)
                      +|...+
T Consensus       741 ~A~~~~  746 (814)
T 3mkq_A          741 LAFNAY  746 (814)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=82.24  E-value=7.1  Score=34.02  Aligned_cols=99  Identities=9%  Similarity=0.001  Sum_probs=74.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhcccCC--C----HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC--CCCcchhhhH
Q 029491           27 ILAFSLLELGQMSDAEEAAKKGLKINKH--D----CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS--CSSFMYTHNW   98 (192)
Q Consensus        27 ~laf~L~e~g~~~eAe~~~rrALaL~P~--d----a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~--~~~~~~~h~~   98 (192)
                      -+|-.+.+.|+|.+|.+...+.+.--..  |    ...+-.-..++..+|+...+.+.+.++...-..  +++.+.+-+.
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            5788899999999999998888773322  2    234445566778899999999999999855422  2232456677


Q ss_pred             HHHHHHHH-hCCCCHHHHHHHHHHhhhhh
Q 029491           99 WHVALCYL-EGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        99 WhlAl~~l-~~G~~~deAl~~yd~~i~~~  126 (192)
                      .--|++++ ..+ +|.+|-..|=.+...-
T Consensus       184 ~~~Gi~~l~~~r-dyk~A~~~F~eaf~~f  211 (394)
T 3txn_A          184 LQSGILHAADER-DFKTAFSYFYEAFEGF  211 (394)
T ss_dssp             HHHHHHHHHTTS-CHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhcc-CHHHHHHHHHHHHhcc
Confidence            77999999 888 9999999988776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	192
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-04

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 5e-04
 Identities = 14/123 (11%), Positives = 35/123 (28%)

Query: 2   GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA 61
           G  +       Q+         +  +L+    +  ++  +   +   +K N     +   
Sbjct: 13  GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSN 72

Query: 62  LCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDN 121
           L +V +     +EA++                       VA   +EG          Y+ 
Sbjct: 73  LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132

Query: 122 HIW 124
            ++
Sbjct: 133 DLY 135

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	192
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.58
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.57
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.56
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.55
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.55
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.53
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.52
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.49
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.49
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.48
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.47
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.47
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.41
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.41
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.36
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.36
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.31
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.3
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.2
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.19
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.18
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.18
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.16
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.12
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.08
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.06
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.05
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.04
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.03
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.01
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.98
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.98
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.93
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.93
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.93
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.91
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.91
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.88
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.88
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.88
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.84
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.78
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.72
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.71
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.68
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.57
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.43
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.32
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.35
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.33
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.29
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.16
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.79
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.54

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=7.6e-15  Score=106.13  Aligned_cols=90  Identities=13%  Similarity=0.104  Sum_probs=77.3

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++.+|+..+.+++..+|+++.++..+|.++...|++++|+..+.+++.++|+++.+++++|.++..+|++++|+..++
T Consensus        16 ~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~   95 (117)
T d1elwa_          16 VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYE   95 (117)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHH
Confidence            47888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HhHhhccCCC
Q 029491           81 ECSSTWSSCS   90 (192)
Q Consensus        81 ~a~~~~p~~~   90 (192)
                      +++...|+++
T Consensus        96 ~a~~~~p~~~  105 (117)
T d1elwa_          96 EGLKHEANNP  105 (117)
T ss_dssp             HHHTTCTTCH
T ss_pred             HHHHhCCCCH
Confidence            8888888854

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.1e-14  Score=115.34  Aligned_cols=118  Identities=18%  Similarity=0.221  Sum_probs=82.7

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |++++|+..+++++..+|+++.++..+|.++...|++++|++.+++++...|+++..+..++.++..+|++++|+..+++
T Consensus       251 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  330 (388)
T d1w3ba_         251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK  330 (388)
T ss_dssp             TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHH
Confidence            66677777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      ++...|+++   .  .+.++|.++...| ++++|+..|++++..
T Consensus       331 al~~~p~~~---~--~~~~la~~~~~~g-~~~~A~~~~~~al~l  368 (388)
T d1w3ba_         331 ALEVFPEFA---A--AHSNLASVLQQQG-KLQEALMHYKEAIRI  368 (388)
T ss_dssp             HTTSCTTCH---H--HHHHHHHHHHTTT-CCHHHHHHHHHHHTT
T ss_pred             HHHhCCCCH---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence            777766642   2  3344777777776 677777777777665

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.7e-14  Score=108.71  Aligned_cols=113  Identities=10%  Similarity=0.050  Sum_probs=97.6

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++.+|+..+++++..+|+++.++.++|.++..+|++++|+..+++||+++|+++.+++.+|.++..+|++++|+..++
T Consensus        23 ~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~  102 (159)
T d1a17a_          23 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE  102 (159)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHH--HHhCCCCHHHHHHHH
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALC--YLEGHSPMRKVLEIY  119 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~--~l~~G~~~deAl~~y  119 (192)
                      +++.+.|+++.     ..++++.+  .+..+ .+++++...
T Consensus       103 ~a~~~~p~~~~-----~~~~l~~~~~~~~~~-~~~~a~~~~  137 (159)
T d1a17a_         103 TVVKVKPHDKD-----AKMKYQECNKIVKQK-AFERAIAGD  137 (159)
T ss_dssp             HHHHHSTTCHH-----HHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHcCCCCHH-----HHHHHHHHHHHHHHH-HHHHHHhCc
Confidence            99999998643     22334433  34444 566666543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=5.7e-14  Score=110.80  Aligned_cols=88  Identities=17%  Similarity=0.075  Sum_probs=82.6

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+.+++.++|+++.++..+|.++...|++++|++.+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus        50 ~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~  129 (259)
T d1xnfa_          50 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL  129 (259)
T ss_dssp             TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccC
Q 029491           81 ECSSTWSS   88 (192)
Q Consensus        81 ~a~~~~p~   88 (192)
                      ++++..|.
T Consensus       130 ~al~~~p~  137 (259)
T d1xnfa_         130 AFYQDDPN  137 (259)
T ss_dssp             HHHHHCTT
T ss_pred             HHHhhccc
Confidence            99887765

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3e-14  Score=119.05  Aligned_cols=119  Identities=11%  Similarity=0.116  Sum_probs=112.4

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ-MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~-~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      +++++|+..+++|+.++|++..++.+.|.++...|+ +++|+..+++++.++|++.++++.+|.++..+|++++|+..++
T Consensus        57 e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~  136 (315)
T d2h6fa1          57 ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIA  136 (315)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHh
Confidence            678999999999999999999999999999999885 9999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ++++++|.+     .|.|-|+|.++...| ++++|+..|+++|...
T Consensus       137 kal~~dp~n-----~~a~~~~~~~~~~~~-~~~~Al~~~~~al~~~  176 (315)
T d2h6fa1         137 DILNQDAKN-----YHAWQHRQWVIQEFK-LWDNELQYVDQLLKED  176 (315)
T ss_dssp             HHHHHCTTC-----HHHHHHHHHHHHHHT-CCTTHHHHHHHHHHHC
T ss_pred             hhhhhhhcc-----hHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHC
Confidence            999999984     457778999999998 9999999999999985

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=9.7e-15  Score=111.60  Aligned_cols=91  Identities=11%  Similarity=0.058  Sum_probs=85.7

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+.+++..+|.++.++.++|.++...|++++|+..+++||.++|+++.++..+|.++..+|++++|+..++
T Consensus        17 ~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~   96 (201)
T d2c2la1          17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQ   96 (201)
T ss_dssp             TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCC
Q 029491           81 ECSSTWSSCSS   91 (192)
Q Consensus        81 ~a~~~~p~~~~   91 (192)
                      +++.+.|....
T Consensus        97 ~al~l~p~~~~  107 (201)
T d2c2la1          97 RAYSLAKEQRL  107 (201)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHhCcccHH
Confidence            99999887543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=3.4e-14  Score=112.14  Aligned_cols=118  Identities=11%  Similarity=0.047  Sum_probs=104.1

Q ss_pred             ChHHHHHHHHhhcCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 029491            3 RPDLCFDIIHQVLPY----NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQF   78 (192)
Q Consensus         3 ~~~~al~~~~ral~~----~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~   78 (192)
                      +.+.++..+.+++..    +|..+.++..+|.++...|++++|+..+++||.++|+++.++..+|.++..+|++++|+..
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~   93 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA   93 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence            345666677777764    3456789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++++.++|..+   .  .+.++|.++...| ++++|+..|++.+...
T Consensus        94 ~~~al~~~p~~~---~--a~~~lg~~~~~~g-~~~~A~~~~~~al~~~  135 (259)
T d1xnfa_          94 FDSVLELDPTYN---Y--AHLNRGIALYYGG-RDKLAQDDLLAFYQDD  135 (259)
T ss_dssp             HHHHHHHCTTCT---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHhhhh---h--hHHHHHHHHHHHh-hHHHHHHHHHHHHhhc
Confidence            999999999864   3  3456999999999 9999999999999874

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.3e-13  Score=106.33  Aligned_cols=122  Identities=13%  Similarity=0.071  Sum_probs=105.6

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++.+|++.+.++   .|.++.++.++|.++..+|++++|++.+.+||+++|+++.++.++|.++..+|++++|+..++
T Consensus        18 ~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~   94 (192)
T d1hh8a_          18 KKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLK   94 (192)
T ss_dssp             TTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHH
Confidence            48899999999876   445678899999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCc-----------chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSF-----------MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~-----------~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++...+.++..           -.....+++|+++..+| ++++|.+.|+.++...
T Consensus        95 kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~-~~~~A~~~l~~A~~~~  150 (192)
T d1hh8a_          95 EALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE-EWKKAEEQLALATSMK  150 (192)
T ss_dssp             HHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTC
T ss_pred             HHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcC
Confidence            999776654320           01234567999999999 9999999999998764

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.5e-13  Score=99.07  Aligned_cols=96  Identities=10%  Similarity=0.061  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHH
Q 029491           25 FGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALC  104 (192)
Q Consensus        25 ~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~  104 (192)
                      +-..|..+...|+|++|+..++++|.++|+++.++.++|.++..+|++++|+..+++++...|+++   .  .+.++|.+
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~--~~~~~g~~   80 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG---K--GYSRKAAA   80 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---H--HHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchh---h--HHHHHHHH
Confidence            346788999999999999999999999999999999999999999999999999999999999864   3  45569999


Q ss_pred             HHhCCCCHHHHHHHHHHhhhhh
Q 029491          105 YLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus       105 ~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +..+| ++++|+..|++++...
T Consensus        81 ~~~~~-~~~~A~~~~~~a~~~~  101 (117)
T d1elwa_          81 LEFLN-RFEEAKRTYEEGLKHE  101 (117)
T ss_dssp             HHHTT-CHHHHHHHHHHHHTTC
T ss_pred             HHHcc-CHHHHHHHHHHHHHhC
Confidence            99999 9999999999999874

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1e-13  Score=112.71  Aligned_cols=118  Identities=10%  Similarity=0.039  Sum_probs=107.4

Q ss_pred             ChHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            3 RPDLCFDIIHQVLPYNQQ--EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         3 ~~~~al~~~~ral~~~p~--~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      ...++...+.+++..+|+  ++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus       151 ~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  230 (323)
T d1fcha_         151 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYR  230 (323)
T ss_dssp             HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHH
Confidence            456788889999998886  478888999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++...|+++   .  .+.++|.++...| ++++|+..|+++|...
T Consensus       231 ~al~~~p~~~---~--a~~~lg~~~~~~g-~~~~A~~~~~~al~l~  270 (323)
T d1fcha_         231 RALELQPGYI---R--SRYNLGISCINLG-AHREAVEHFLEALNMQ  270 (323)
T ss_dssp             HHHHHCTTCH---H--HHHHHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhccH---H--HHHHHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence            9999998853   3  4556999999999 9999999999999874

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.49  E-value=9.6e-14  Score=99.58  Aligned_cols=92  Identities=11%  Similarity=-0.052  Sum_probs=85.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHH
Q 029491           26 GILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCY  105 (192)
Q Consensus        26 ~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~  105 (192)
                      ...|..+...|++++|+..+++++.++|++++++..+|.++...|++++|+..+++++.+.|+++   .  .+..+|.++
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~--a~~~la~~y   94 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI---A--VHAALAVSH   94 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---H--HHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccc---c--chHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999964   3  555699999


Q ss_pred             HhCCCCHHHHHHHHHHhh
Q 029491          106 LEGHSPMRKVLEIYDNHI  123 (192)
Q Consensus       106 l~~G~~~deAl~~yd~~i  123 (192)
                      ...| ++++|++.+++.|
T Consensus        95 ~~~g-~~~~A~~~l~~~l  111 (112)
T d1hxia_          95 TNEH-NANAALASLRAWL  111 (112)
T ss_dssp             HHHH-HHHHHHHHHHHHH
T ss_pred             HHCC-CHHHHHHHHHHHh
Confidence            9999 9999999998865

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=7e-13  Score=107.23  Aligned_cols=120  Identities=13%  Similarity=0.106  Sum_probs=108.8

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+.++....|..+..+..+|.++...|++++|+..+++|++++|+++.++..+|.++..+|++++|+..++
T Consensus       216 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~  295 (388)
T d1w3ba_         216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN  295 (388)
T ss_dssp             TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            47888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ++....|...     ..+..++.++...| ++++|+..|++++...
T Consensus       296 ~~~~~~~~~~-----~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~  335 (388)
T d1w3ba_         296 TALRLCPTHA-----DSLNNLANIKREQG-NIEEAVRLYRKALEVF  335 (388)
T ss_dssp             HHHHHCTTCH-----HHHHHHHHHHHTTT-CHHHHHHHHHHHTTSC
T ss_pred             hhhccCCccc-----hhhhHHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence            9999988743     34556899999998 9999999999998764

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=2.7e-13  Score=103.37  Aligned_cols=99  Identities=7%  Similarity=-0.080  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHH
Q 029491           22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHV  101 (192)
Q Consensus        22 ~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~Whl  101 (192)
                      +..+-..|..+...|+|++|+..+++||.++|+++.++.++|.++...|++++|+..+++++.+.|++.   .  .+.++
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~---~--a~~~l   78 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV---K--AHFFL   78 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH---H--HHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcH---H--HHHHH
Confidence            445667899999999999999999999999999999999999999999999999999999999999853   3  34569


Q ss_pred             HHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491          102 ALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus       102 Al~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      |.+++.+| ++++|+..|++++...
T Consensus        79 g~~~~~l~-~~~~A~~~~~~al~l~  102 (201)
T d2c2la1          79 GQCQLEME-SYDEAIANLQRAYSLA  102 (201)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCC-CHHHHHHHHHHHHHhC
Confidence            99999999 9999999999988754

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.5e-12  Score=104.33  Aligned_cols=125  Identities=9%  Similarity=0.051  Sum_probs=109.1

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++++|+..+++++..+|+++.++..+|.++...|++++|...+.+|++++|+++.++..+|.++..+|++++|+..++
T Consensus        32 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  111 (323)
T d1fcha_          32 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR  111 (323)
T ss_dssp             TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchh
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HhHhhccCCCCc----------------------------------------------chhhhHHHHHHHHHhCCCCHHH
Q 029491           81 ECSSTWSSCSSF----------------------------------------------MYTHNWWHVALCYLEGHSPMRK  114 (192)
Q Consensus        81 ~a~~~~p~~~~~----------------------------------------------~~~h~~WhlAl~~l~~G~~~de  114 (192)
                      +++...|.....                                              .....+..+|.++...| ++++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~-~~~~  190 (323)
T d1fcha_         112 DWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG-EYDK  190 (323)
T ss_dssp             HHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT-CHHH
T ss_pred             hHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH-HHhh
Confidence            887665542110                                              01223456888888998 8999


Q ss_pred             HHHHHHHhhhhh
Q 029491          115 VLEIYDNHIWKE  126 (192)
Q Consensus       115 Al~~yd~~i~~~  126 (192)
                      |+..|++.+...
T Consensus       191 A~~~~~~al~~~  202 (323)
T d1fcha_         191 AVDCFTAALSVR  202 (323)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             hhcccccccccc
Confidence            999999998764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.41  E-value=3.9e-13  Score=96.33  Aligned_cols=83  Identities=11%  Similarity=-0.008  Sum_probs=81.0

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      .|++.+|+..+++++..+|+++.++.++|.++.+.|++++|+..+++|++++|+++.++..+|.++..+|+.++|+..++
T Consensus        29 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~  108 (112)
T d1hxia_          29 LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR  108 (112)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhH
Q 029491           81 ECS   83 (192)
Q Consensus        81 ~a~   83 (192)
                      +++
T Consensus       109 ~~l  111 (112)
T d1hxia_         109 AWL  111 (112)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            875

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.4e-12  Score=96.64  Aligned_cols=97  Identities=9%  Similarity=0.048  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHH
Q 029491           24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL  103 (192)
Q Consensus        24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl  103 (192)
                      -+-..|..+...|+|++|+..+++|+.++|+++.++.++|.++...|++++|+..+++++.++|.+.   .  .+..+|.
T Consensus        12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~---~--a~~~~g~   86 (159)
T d1a17a_          12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI---K--GYYRRAA   86 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---H--HHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccch---H--HHHHHHH
Confidence            3456788899999999999999999999999999999999999999999999999999999999853   3  4455999


Q ss_pred             HHHhCCCCHHHHHHHHHHhhhhh
Q 029491          104 CYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus       104 ~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ++..+| ++++|+..|++.+...
T Consensus        87 ~~~~~g-~~~eA~~~~~~a~~~~  108 (159)
T d1a17a_          87 SNMALG-KFRAALRDYETVVKVK  108 (159)
T ss_dssp             HHHHTT-CHHHHHHHHHHHHHHS
T ss_pred             HHHHcC-CHHHHHHHHHHHHHcC
Confidence            999999 9999999999999885

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.36  E-value=3.5e-13  Score=101.11  Aligned_cols=88  Identities=14%  Similarity=0.021  Sum_probs=81.2

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCC
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL----------GQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC   71 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~----------g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr   71 (192)
                      |++++|+..+++++..+|+++.++..+|.++.+.          +.+++|++.+++||+++|+++.++.++|.++..+|+
T Consensus        11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~   90 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF   90 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHccc
Confidence            5688999999999999999999999999999754          456899999999999999999999999999998875


Q ss_pred             -----------HHHHHHHHHHhHhhccCC
Q 029491           72 -----------FKEAVQFMEECSSTWSSC   89 (192)
Q Consensus        72 -----------~~eai~~~~~a~~~~p~~   89 (192)
                                 +++|+.++++++.+.|++
T Consensus        91 ~~~~~~~~~~~~~~A~~~~~kal~l~P~~  119 (145)
T d1zu2a1          91 LTPDETEAKHNFDLATQFFQQAVDEQPDN  119 (145)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             chhhHHHHHHhHHHhhhhhhcccccCCCH
Confidence                       699999999999999985

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.3e-12  Score=108.91  Aligned_cols=118  Identities=9%  Similarity=0.006  Sum_probs=107.1

Q ss_pred             ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491            3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC   82 (192)
Q Consensus         3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a   82 (192)
                      +..+++..+.+++..+|++..++..+|.++...|++++|++.+++|++++|++..++.++|.++...|++++|+..++++
T Consensus        93 ~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~a  172 (315)
T d2h6fa1          93 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQL  172 (315)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCcchhhhHHHHHHHHHhCCCC------HHHHHHHHHHhhhhh
Q 029491           83 SSTWSSCSSFMYTHNWWHVALCYLEGHSP------MRKVLEIYDNHIWKE  126 (192)
Q Consensus        83 ~~~~p~~~~~~~~h~~WhlAl~~l~~G~~------~deAl~~yd~~i~~~  126 (192)
                      +.++|.+.+     .|-+++.++...| .      +++|+..|.++|...
T Consensus       173 l~~~p~n~~-----a~~~r~~~l~~~~-~~~~~~~~~~ai~~~~~al~~~  216 (315)
T d2h6fa1         173 LKEDVRNNS-----VWNQRYFVISNTT-GYNDRAVLEREVQYTLEMIKLV  216 (315)
T ss_dssp             HHHCTTCHH-----HHHHHHHHHHHTT-CSCSHHHHHHHHHHHHHHHHHS
T ss_pred             HHHCCccHH-----HHHHHHHHHHHcc-ccchhhhhHHhHHHHHHHHHhC
Confidence            999998532     4445777766655 4      689999999999885

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.1e-12  Score=92.46  Aligned_cols=96  Identities=11%  Similarity=0.041  Sum_probs=83.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHhHhhccCCCCcchhhhHHHHHH
Q 029491           27 ILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF---KEAVQFMEECSSTWSSCSSFMYTHNWWHVAL  103 (192)
Q Consensus        27 ~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~---~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl  103 (192)
                      .++..+...+++++|++.|++||+++|+++.++.++|.++...++.   ++|+..+++++...|.. .  ....+.++|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~-~--~~~~~~~Lg~   80 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE-E--QRDYVFYLAV   80 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH-H--HHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCc-h--HHHHHHHHHH
Confidence            4566788999999999999999999999999999999999875554   56999999999887662 1  3346678999


Q ss_pred             HHHhCCCCHHHHHHHHHHhhhhh
Q 029491          104 CYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus       104 ~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +|..+| +|++|+..|++++...
T Consensus        81 ~y~~~g-~~~~A~~~~~~aL~~~  102 (122)
T d1nzna_          81 GNYRLK-EYEKALKYVRGLLQTE  102 (122)
T ss_dssp             HHHHTT-CHHHHHHHHHHHHHHC
T ss_pred             HHHHHh-hhHHHHHHHHHHHHhC
Confidence            999999 9999999999999985

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.6e-11  Score=88.38  Aligned_cols=102  Identities=8%  Similarity=0.091  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchh---hhHH
Q 029491           23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYT---HNWW   99 (192)
Q Consensus        23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~---h~~W   99 (192)
                      ..+-.+|..+...|+|++|+..+++||.++|+++.++.++|.++.++|++++|+..+++++.+.|+.+.. ..   ..+-
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~-~~~~a~~~~   83 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED-YRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHH-HHHHHHHHH
Confidence            3455788999999999999999999999999999999999999999999999999999999999986541 11   1233


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491          100 HVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus       100 hlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .+|..+..++ ++++|+..|++.+...
T Consensus        84 ~lg~~~~~~~-~~~~A~~~~~kal~~~  109 (128)
T d1elra_          84 RIGNSYFKEE-KYKDAIHFYNKSLAEH  109 (128)
T ss_dssp             HHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhC-CHHHHHHHHHHHHhcC
Confidence            5888888998 9999999999999774

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.20  E-value=3.9e-11  Score=90.77  Aligned_cols=90  Identities=9%  Similarity=0.003  Sum_probs=82.3

Q ss_pred             CCChHHHHHHHHhhcC----------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLP----------------YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCH   64 (192)
Q Consensus         1 ~G~~~~al~~~~ral~----------------~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lah   64 (192)
                      .|++.+|+..+.+++.                .+|....++.++|.++.+.|++++|+..+.+||+++|+++.++..+|.
T Consensus        40 ~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~  119 (169)
T d1ihga1          40 SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQ  119 (169)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHH
Confidence            3788889888888874                346677888999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHhHhhccCCC
Q 029491           65 VLQHDCCFKEAVQFMEECSSTWSSCS   90 (192)
Q Consensus        65 vl~~~Gr~~eai~~~~~a~~~~p~~~   90 (192)
                      ++..+|++++|+..+++++.+.|+++
T Consensus       120 ~~~~l~~~~~A~~~~~~al~l~p~n~  145 (169)
T d1ihga1         120 GWQGLKEYDQALADLKKAQEIAPEDK  145 (169)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            99999999999999999999999854

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.6e-11  Score=89.70  Aligned_cols=88  Identities=7%  Similarity=-0.140  Sum_probs=80.3

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcccCCC--HHHHHHHHHHHHhcCCHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG---QMSDAEEAAKKGLKINKHD--CWSQHALCHVLQHDCCFKEAV   76 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g---~~~eAe~~~rrALaL~P~d--a~A~h~lahvl~~~Gr~~eai   76 (192)
                      +++.+|...+++++..+|+++.++.++|.+|...+   ++++|+..++++++.+|++  +.++.++|.++..+|++++|+
T Consensus        13 ~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~   92 (122)
T d1nzna_          13 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   92 (122)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHH
Confidence            46788999999999999999999999999998755   5567999999999999876  458999999999999999999


Q ss_pred             HHHHHhHhhccCC
Q 029491           77 QFMEECSSTWSSC   89 (192)
Q Consensus        77 ~~~~~a~~~~p~~   89 (192)
                      ..+++++.++|++
T Consensus        93 ~~~~~aL~~~P~~  105 (122)
T d1nzna_          93 KYVRGLLQTEPQN  105 (122)
T ss_dssp             HHHHHHHHHCTTC
T ss_pred             HHHHHHHHhCcCC
Confidence            9999999999985

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.18  E-value=1.1e-10  Score=87.52  Aligned_cols=89  Identities=16%  Similarity=-0.035  Sum_probs=81.2

Q ss_pred             CChHHHHHHHHhhcCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQE----------------DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHV   65 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~----------------~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahv   65 (192)
                      |++.+|+..+++++...|..                ...+.++|.++..+|++++|+..+.+||+++|+++.++..+|.+
T Consensus        31 ~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~  110 (153)
T d2fbna1          31 NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVA  110 (153)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHH
Confidence            78999999999999765422                14677899999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHhHhhccCCC
Q 029491           66 LQHDCCFKEAVQFMEECSSTWSSCS   90 (192)
Q Consensus        66 l~~~Gr~~eai~~~~~a~~~~p~~~   90 (192)
                      +..+|++++|+..+++++.+.|++.
T Consensus       111 ~~~lg~~~~A~~~~~~al~l~P~n~  135 (153)
T d2fbna1         111 NMYFGFLEEAKENLYKAASLNPNNL  135 (153)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999864

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=7.7e-11  Score=89.77  Aligned_cols=90  Identities=14%  Similarity=0.081  Sum_probs=82.4

Q ss_pred             CChHHHHHHHHhhcCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQE---------------DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVL   66 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~---------------~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl   66 (192)
                      |++++|+..+++++...|..               ..++.++|.++...|+|++|+..+++||.++|+++.++..+|.++
T Consensus        27 ~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  106 (170)
T d1p5qa1          27 GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAH  106 (170)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHH
Confidence            78999999999999876643               255678999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHhHhhccCCCC
Q 029491           67 QHDCCFKEAVQFMEECSSTWSSCSS   91 (192)
Q Consensus        67 ~~~Gr~~eai~~~~~a~~~~p~~~~   91 (192)
                      ..+|++++|+..+++++.++|+++.
T Consensus       107 ~~~g~~~~A~~~~~~al~l~P~n~~  131 (170)
T d1p5qa1         107 LAVNDFELARADFQKVLQLYPNNKA  131 (170)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred             HHhhhHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999998653

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=6.6e-11  Score=86.15  Aligned_cols=88  Identities=10%  Similarity=0.135  Sum_probs=81.1

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHH-------HHHHHHHHHHhcCCHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW-------SQHALCHVLQHDCCFK   73 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~-------A~h~lahvl~~~Gr~~   73 (192)
                      .|++.+|+..+.+++.++|+++.++.++|.++..+|+|++|+..+++||.++|+++.       ++..+|.++...++++
T Consensus        17 ~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~   96 (128)
T d1elra_          17 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYK   96 (128)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             cCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            489999999999999999999999999999999999999999999999999999864       6667788889999999


Q ss_pred             HHHHHHHHhHhhccC
Q 029491           74 EAVQFMEECSSTWSS   88 (192)
Q Consensus        74 eai~~~~~a~~~~p~   88 (192)
                      +|+.++++++...|.
T Consensus        97 ~A~~~~~kal~~~~~  111 (128)
T d1elra_          97 DAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhcCCC
Confidence            999999999987655

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=5e-10  Score=86.84  Aligned_cols=88  Identities=9%  Similarity=0.023  Sum_probs=83.2

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC----------------HHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD----------------CWSQHALCH   64 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d----------------a~A~h~lah   64 (192)
                      +|++++|+..+.+|+.++|+++.++.++|.++.++|++++|++.+++|+...|.+                +.+++++|.
T Consensus        49 ~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~  128 (192)
T d1hh8a_          49 LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF  128 (192)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHH
T ss_pred             cCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999999999887654                467899999


Q ss_pred             HHHhcCCHHHHHHHHHHhHhhccC
Q 029491           65 VLQHDCCFKEAVQFMEECSSTWSS   88 (192)
Q Consensus        65 vl~~~Gr~~eai~~~~~a~~~~p~   88 (192)
                      ++..+|++++|+..+++++.++|.
T Consensus       129 ~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_         129 MYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999987

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.08  E-value=3.8e-10  Score=85.44  Aligned_cols=120  Identities=14%  Similarity=0.049  Sum_probs=93.0

Q ss_pred             CCChHHHHHHHHhhcCCCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQ---------------EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHV   65 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~---------------~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahv   65 (192)
                      .|++.+|+..+.+|+...|.               ...++.++|.++...|++++|+..+.++|.++|+++.+++.+|.+
T Consensus        28 ~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~  107 (168)
T d1kt1a1          28 GGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEA  107 (168)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHH
Confidence            38899999999998864332               235677899999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           66 LQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        66 l~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      +..+|++++|+..+++++.+.|+++   ..+..  ++.+....+...+.....|.+....
T Consensus       108 ~~~l~~~~~A~~~~~~al~l~P~n~---~~~~~--l~~~~~~~~~~~e~~kk~~~~~f~~  162 (168)
T d1kt1a1         108 QLLMNEFESAKGDFEKVLEVNPQNK---AARLQ--IFMCQKKAKEHNERDRRTYANMFKK  162 (168)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSCTTCH---HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCH---HHHHH--HHHHHHHHHhHHHHHHHHHHHHHhh
Confidence            9999999999999999999999864   33332  4554433331223345555544443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.06  E-value=1.1e-10  Score=87.07  Aligned_cols=90  Identities=13%  Similarity=0.074  Sum_probs=76.3

Q ss_pred             HHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHhHhhccCCCCcchhhhHHHH
Q 029491           32 LLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHD----------CCFKEAVQFMEECSSTWSSCSSFMYTHNWWHV  101 (192)
Q Consensus        32 L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~----------Gr~~eai~~~~~a~~~~p~~~~~~~~h~~Whl  101 (192)
                      +...+.|++|+..+++|++++|+++.+++++|.++...          +++++|+..++++++++|+++   .  .++.+
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~---~--a~~~l   81 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD---E--AVWCI   81 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH---H--HHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhh---H--HHhhH
Confidence            56678899999999999999999999999999999865          556899999999999999963   3  44558


Q ss_pred             HHHHHhCC----------CCHHHHHHHHHHhhhhh
Q 029491          102 ALCYLEGH----------SPMRKVLEIYDNHIWKE  126 (192)
Q Consensus       102 Al~~l~~G----------~~~deAl~~yd~~i~~~  126 (192)
                      |.++.++|          ..|++|...|++++...
T Consensus        82 G~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~  116 (145)
T d1zu2a1          82 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ  116 (145)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence            88887765          03689999999999885

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.05  E-value=1.3e-10  Score=95.52  Aligned_cols=120  Identities=10%  Similarity=-0.004  Sum_probs=101.0

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |+.++|+..+++++..+|+++.++..++..|...|++++|++.++++++++|++..+...++.++...++.+++.....+
T Consensus        10 G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~   89 (264)
T d1zbpa1          10 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAAT   89 (264)
T ss_dssp             TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999888887665554


Q ss_pred             hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .....+.  .  ..-.....|..++..| ++++|.+.+++.....
T Consensus        90 ~~~~~~p--~--~~~~~l~~a~~~~~~g-d~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          90 AKVLGEN--E--ELTKSLVSFNLSMVSQ-DYEQVSELALQIEELR  129 (264)
T ss_dssp             EECCCSC--H--HHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHC
T ss_pred             hhcccCc--h--HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhcC
Confidence            4332211  1  1112334677778888 9999999999988874

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.04  E-value=1.1e-09  Score=81.75  Aligned_cols=103  Identities=13%  Similarity=0.143  Sum_probs=83.1

Q ss_pred             HHHHHH--HHHHHHcCCHHHHHHHHHHHhcccCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491           23 FIFGIL--AFSLLELGQMSDAEEAAKKGLKINKHD------------CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS   88 (192)
Q Consensus        23 ~~~~~l--af~L~e~g~~~eAe~~~rrALaL~P~d------------a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~   88 (192)
                      .++..+  |......|+|++|+..+++||+++|+.            +.++.++|.++..+|++++|+..+++++.+.|.
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            344444  667778899999999999999999986            468999999999999999999999999987664


Q ss_pred             CCCc------chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           89 CSSF------MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        89 ~~~~------~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ....      .....+.++|.++..+| ++++|+..|++++...
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg-~~eeA~~~~~~Al~l~  130 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLG-RGAEAMPEFKKVVEMI  130 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence            3210      01112345899999999 9999999999998774

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=4.6e-09  Score=86.04  Aligned_cols=135  Identities=13%  Similarity=0.082  Sum_probs=109.8

Q ss_pred             hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCC--
Q 029491            4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL----------GQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC--   71 (192)
Q Consensus         4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e~----------g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr--   71 (192)
                      .++|++.+++++..+|+++.++.+.+..+...          |++++|...+++++..+|+++.++..+|.++...|+  
T Consensus        45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~  124 (334)
T d1dcea1          45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN  124 (334)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred             cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcccc
Confidence            47899999999999999998887777665544          458999999999999999999999999999999876  


Q ss_pred             HHHHHHHHHHhHhhccCCCCcchhhhHHH-HHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhh
Q 029491           72 FKEAVQFMEECSSTWSSCSSFMYTHNWWH-VALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVY  149 (192)
Q Consensus        72 ~~eai~~~~~a~~~~p~~~~~~~~h~~Wh-lAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~  149 (192)
                      .++++..+++++..+|..     .+.+++ .+.++...| .+++|+..+++.|...  |+   .......-+.++.++.
T Consensus       125 ~~~a~~~~~~al~~~~~~-----~~~~~~~~~~~~~~~~-~~~~Al~~~~~~i~~~--p~---~~~a~~~l~~~~~~~~  192 (334)
T d1dcea1         125 WARELELCARFLEADERN-----FHCWDYRRFVAAQAAV-APAEELAFTDSLITRN--FS---NYSSWHYRSCLLPQLH  192 (334)
T ss_dssp             HHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTCC-CHHHHHHHHHTTTTTT--CC---CHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhhCchh-----hhhhhhHHHHHHHhcc-ccHHHHHHHHHHHHcC--CC---CHHHHHHHHHHHHHhc
Confidence            899999999999998874     234443 557777777 8999999999999885  32   3444556666666654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.5e-09  Score=81.11  Aligned_cols=99  Identities=11%  Similarity=-0.062  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHhHhhc
Q 029491           22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---------------WSQHALCHVLQHDCCFKEAVQFMEECSSTW   86 (192)
Q Consensus        22 ~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da---------------~A~h~lahvl~~~Gr~~eai~~~~~a~~~~   86 (192)
                      +..+-..|..+...|+|++|+..+++||.+.|.+.               -++.++|.++..+|++++|+..+++++.++
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            34455678899999999999999999999988754               456789999999999999999999999999


Q ss_pred             cCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           87 SSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        87 p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      |.++   .  .+..+|.++..+| ++++|+..|++++...
T Consensus        93 p~~~---~--a~~~~g~~~~~~g-~~~~A~~~~~~al~l~  126 (170)
T d1p5qa1          93 SNNE---K--GLSRRGEAHLAVN-DFELARADFQKVLQLY  126 (170)
T ss_dssp             TTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred             ccch---h--hhHHHHHHHHHhh-hHHHHHHHHHHHHHhC
Confidence            9853   3  4445999999999 9999999999999875

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.98  E-value=3e-10  Score=84.91  Aligned_cols=90  Identities=16%  Similarity=0.028  Sum_probs=79.5

Q ss_pred             CChHHHHHHHHhhcCCCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC-----------CHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQE------------DFIFGILAFSLLELGQMSDAEEAAKKGLKINKH-----------DCWS   58 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~------------~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~-----------da~A   58 (192)
                      |++++|+..+++++.+.|..            +.++.++|.++...|++++|...+.+||.+.|.           .+.+
T Consensus        23 g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a  102 (156)
T d2hr2a1          23 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISA  102 (156)
T ss_dssp             TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHH
Confidence            89999999999999876643            467889999999999999999999999998653           3457


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCC
Q 029491           59 QHALCHVLQHDCCFKEAVQFMEECSSTWSSCSS   91 (192)
Q Consensus        59 ~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~   91 (192)
                      +.++|.++..+|++++|+..+++++++.|....
T Consensus       103 ~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~  135 (156)
T d2hr2a1         103 VYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  135 (156)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence            899999999999999999999999999887543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=1.4e-08  Score=79.95  Aligned_cols=125  Identities=12%  Similarity=-0.009  Sum_probs=105.1

Q ss_pred             CCChHHHHHHHHhhcCCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC------HHHHHHHHHHHHhc
Q 029491            1 MGRPDLCFDIIHQVLPYNQQED-----FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQHD   69 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~-----~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d------a~A~h~lahvl~~~   69 (192)
                      .|++++|+..+++++...|++.     .++.++|.++...|++++|+..+++++++.|..      .++...++.++...
T Consensus        25 ~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (366)
T d1hz4a_          25 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ  104 (366)
T ss_dssp             TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence            4899999999999999998763     578899999999999999999999999987654      57889999999999


Q ss_pred             CCHHHHHHHHHHhHhhccCCCC---cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           70 CCFKEAVQFMEECSSTWSSCSS---FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        70 Gr~~eai~~~~~a~~~~p~~~~---~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      |++.+++..+.+++...+....   .......-.+|..+...| +++++...|++.+...
T Consensus       105 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~a~~~~~~~~~~~  163 (366)
T d1hz4a_         105 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA-RLDEAEASARSGIEVL  163 (366)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhc-chhhhHHHHHHHHHHh
Confidence            9999999999999987654321   011223345888899998 9999999999988774

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.93  E-value=3.5e-09  Score=79.67  Aligned_cols=96  Identities=9%  Similarity=-0.060  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhc----------------ccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491           25 FGILAFSLLELGQMSDAEEAAKKGLK----------------INKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS   88 (192)
Q Consensus        25 ~~~laf~L~e~g~~~eAe~~~rrALa----------------L~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~   88 (192)
                      +-..|..+...|+|++|+..+++||.                ++|.++..+.++|.++..+|++++|+..++++++++|.
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  109 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS  109 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence            45667788899999999999999985                57888999999999999999999999999999999998


Q ss_pred             CCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           89 CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        89 ~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      ++     ..+.++|.++..+| ++++|+..|.+++...
T Consensus       110 ~~-----~a~~~~g~~~~~l~-~~~~A~~~~~~al~l~  141 (169)
T d1ihga1         110 NT-----KALYRRAQGWQGLK-EYDQALADLKKAQEIA  141 (169)
T ss_dssp             CH-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred             hh-----hHHHhHHHHHHHcc-CHHHHHHHHHHHHHhC
Confidence            53     35567999999999 9999999999999985

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.93  E-value=4.3e-09  Score=81.20  Aligned_cols=83  Identities=10%  Similarity=-0.117  Sum_probs=48.8

Q ss_pred             CCChHHHHHHHHhhcCCCCCCHH----------------------HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQEDF----------------------IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS   58 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~~----------------------~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A   58 (192)
                      .|+++++.+.+.+|+.+++++..                      ++..++-++.+.|++++|+..++++|+++|.+..+
T Consensus        24 ~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~  103 (179)
T d2ff4a2          24 AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPL  103 (179)
T ss_dssp             TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             CCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHH
Confidence            38999999999999999986642                      23444444444555555555555555555555555


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhH
Q 029491           59 QHALCHVLQHDCCFKEAVQFMEECS   83 (192)
Q Consensus        59 ~h~lahvl~~~Gr~~eai~~~~~a~   83 (192)
                      +..++.++..+|++++|+..|+++.
T Consensus       104 ~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2         104 WTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            5555555555555555555444443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.93  E-value=6.4e-09  Score=80.22  Aligned_cols=97  Identities=9%  Similarity=-0.003  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH----------------------HHHHHHHHHHHhcCCHHHHHHHH
Q 029491           22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC----------------------WSQHALCHVLQHDCCFKEAVQFM   79 (192)
Q Consensus        22 ~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da----------------------~A~h~lahvl~~~Gr~~eai~~~   79 (192)
                      -..+...|..+...|++++|...+++||++.|+++                      .++..++.++..+|++++++..+
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            35677888999999999999999999999988664                      46899999999999999999999


Q ss_pred             HHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhh
Q 029491           80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW  124 (192)
Q Consensus        80 ~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~  124 (192)
                      ++++..+|.+.     ..|.+++.++...| ++++|++.|++...
T Consensus        91 ~~al~~~P~~e-----~~~~~l~~al~~~G-r~~eAl~~y~~~~~  129 (179)
T d2ff4a2          91 EALTFEHPYRE-----PLWTQLITAYYLSD-RQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHSTTCH-----HHHHHHHHHHHTTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHhCCccH-----HHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence            99999999853     36667999999998 99999999998754

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.91  E-value=3.6e-09  Score=85.81  Aligned_cols=125  Identities=13%  Similarity=0.095  Sum_probs=104.5

Q ss_pred             CCChHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC------HHHHHHHHHHHHh
Q 029491            1 MGRPDLCFDIIHQVLPYN------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQH   68 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~------p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d------a~A~h~lahvl~~   68 (192)
                      .|++++|+..+.+++...      ++.+..+...|.++...|++++|.+.+++++.+.++.      ..++..+|.+++.
T Consensus        50 ~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  129 (290)
T d1qqea_          50 RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN  129 (290)
T ss_dssp             TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhh
Confidence            478999999999999863      3345788899999999999999999999999998887      7789999999977


Q ss_pred             -cCCHHHHHHHHHHhHhhccCCCCc-chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           69 -DCCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        69 -~Gr~~eai~~~~~a~~~~p~~~~~-~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                       .|++++|+.++++++.+.+..+.. ......-++|.++..+| +|++|+..|++.+...
T Consensus       130 ~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g-~y~~A~~~~~~~~~~~  188 (290)
T d1qqea_         130 DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG-QYIEASDIYSKLIKSS  188 (290)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcC-hHHHHHHHHHHHHHhC
Confidence             599999999999999876664331 11223446899999999 9999999999988774

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.91  E-value=6.8e-09  Score=77.33  Aligned_cols=96  Identities=7%  Similarity=-0.010  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491           25 FGILAFSLLELGQMSDAEEAAKKGLKINKHDC----------------WSQHALCHVLQHDCCFKEAVQFMEECSSTWSS   88 (192)
Q Consensus        25 ~~~laf~L~e~g~~~eAe~~~rrALaL~P~da----------------~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~   88 (192)
                      +--.|..+...|+|.+|+..+.+||.+-|...                ..+.++|.++..+|++++|+..+++++.++|.
T Consensus        20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~   99 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN   99 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccch
Confidence            34467788899999999999999998776543                35678999999999999999999999999998


Q ss_pred             CCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           89 CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        89 ~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +.   .  .++++|.++..+| ++++|+..|++++...
T Consensus       100 ~~---k--a~~~~g~~~~~lg-~~~~A~~~~~~al~l~  131 (153)
T d2fbna1         100 NV---K--ALYKLGVANMYFG-FLEEAKENLYKAASLN  131 (153)
T ss_dssp             CH---H--HHHHHHHHHHHHT-CHHHHHHHHHHHHHHS
T ss_pred             hh---h--hhHHhHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence            53   3  5667999999999 9999999999999885

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.88  E-value=8.9e-09  Score=77.61  Aligned_cols=98  Identities=9%  Similarity=-0.059  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcc
Q 029491           23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---------------CWSQHALCHVLQHDCCFKEAVQFMEECSSTWS   87 (192)
Q Consensus        23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---------------a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p   87 (192)
                      ..+--.|..+...|+|.+|...+++||.+-|..               ...+.++|.|+..+|++++|+..+++++.++|
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p   95 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS   95 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence            445567899999999999999999999765543               35577899999999999999999999999999


Q ss_pred             CCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           88 SCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        88 ~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .+.   .  .++.+|.++..+| +|++|+..|.+++...
T Consensus        96 ~~~---~--a~~~~~~~~~~l~-~~~~A~~~~~~al~l~  128 (168)
T d1kt1a1          96 ANE---K--GLYRRGEAQLLMN-EFESAKGDFEKVLEVN  128 (168)
T ss_dssp             TCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHSC
T ss_pred             chH---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence            853   3  4445999999999 9999999999999874

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.5e-09  Score=95.25  Aligned_cols=116  Identities=9%  Similarity=-0.064  Sum_probs=73.2

Q ss_pred             ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491            3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC   82 (192)
Q Consensus         3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a   82 (192)
                      .+..++..+++++..+|++...+..+|.++...|++++|...+++++.++|.  .++..+|.++..+|++++|+.+|+++
T Consensus       101 ~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~~~~~~A~~~y~~A  178 (497)
T d1ya0a1         101 FYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTSQAESYYRHA  178 (497)
T ss_dssp             HHHHHHHHHTC-------------------------------CCHHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            3567777888888899999999999999999999999999999999998886  67888999999999999999999999


Q ss_pred             HhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        83 ~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +.++|+++   ..|+  ++|..+...| ++.+|+..|.+++...
T Consensus       179 ~~l~P~~~---~~~~--~Lg~~~~~~~-~~~~A~~~y~ral~~~  216 (497)
T d1ya0a1         179 AQLVPSNG---QPYN--QLAILASSKG-DHLTTIFYYCRSIAVK  216 (497)
T ss_dssp             HHHCTTBS---HHHH--HHHHHHHHTT-CHHHHHHHHHHHHSSS
T ss_pred             HHHCCCch---HHHH--HHHHHHHHcC-CHHHHHHHHHHHHhCC
Confidence            99999964   3444  5999999998 8999999999999763

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.8e-09  Score=74.67  Aligned_cols=69  Identities=13%  Similarity=0.029  Sum_probs=52.8

Q ss_pred             CCChHHHHHHHHhhcCCCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhc
Q 029491            1 MGRPDLCFDIIHQVLPYNQQ-------EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHD   69 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~-------~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~   69 (192)
                      .|++.+|..++++|+...|.       .+.++.++|+++...|++++|++.+++||+++|+++.++.+++.+....
T Consensus        18 ~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          18 EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            47788888888888766443       3567888888888888888888888888888888888888887765443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.84  E-value=5.4e-10  Score=91.74  Aligned_cols=118  Identities=11%  Similarity=-0.024  Sum_probs=101.3

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhcccCCCHHHH-HHHHHHHHhcCCHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ--MSDAEEAAKKGLKINKHDCWSQ-HALCHVLQHDCCFKEAVQF   78 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~--~~eAe~~~rrALaL~P~da~A~-h~lahvl~~~Gr~~eai~~   78 (192)
                      |+..+++..+++++..+|.++.++..+|.++...++  +++|...+.++++++|++..++ +..+.++...|+.++|+.+
T Consensus        87 ~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~  166 (334)
T d1dcea1          87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF  166 (334)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHH
Confidence            346789999999999999999999999999988875  8999999999999999999986 5677888899999999999


Q ss_pred             HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491           79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~  125 (192)
                      +++++..+|.+.   .  .+.++|.++..+| ++++|...+++.+..
T Consensus       167 ~~~~i~~~p~~~---~--a~~~l~~~~~~~~-~~~~A~~~~~~~~~~  207 (334)
T d1dcea1         167 TDSLITRNFSNY---S--SWHYRSCLLPQLH-PQPDSGPQGRLPENV  207 (334)
T ss_dssp             HHTTTTTTCCCH---H--HHHHHHHHHHHHS-CCCCSSSCCSSCHHH
T ss_pred             HHHHHHcCCCCH---H--HHHHHHHHHHHhc-CHHHHHHHHHHhHHh
Confidence            999999999853   3  4445899998998 888887666555444

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.5e-08  Score=69.85  Aligned_cols=67  Identities=7%  Similarity=-0.119  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCC
Q 029491           24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHD-------CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS   90 (192)
Q Consensus        24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d-------a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~   90 (192)
                      -+..+|.++.+.|+|++|+..+++|+++.|.+       +.++.++|.++..+|++++|+..+++++.++|+++
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~   80 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH
Confidence            34578899999999999999999999998765       67899999999999999999999999999999964

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=1e-07  Score=74.83  Aligned_cols=106  Identities=11%  Similarity=0.032  Sum_probs=88.3

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCc-c
Q 029491           20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD-----CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSF-M   93 (192)
Q Consensus        20 ~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d-----a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~-~   93 (192)
                      -.+.++...|-++...|++++|++.+++||+++|++     +.++..+|.++..+|++++|+..+++++.+.+..+.. .
T Consensus        10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   89 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY   89 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence            346778889999999999999999999999999997     4588899999999999999999999999887765431 1


Q ss_pred             hhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           94 YTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        94 ~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .....-.++..+...| +++++...|.+++...
T Consensus        90 ~~~~~~~~~~~~~~~~-~~~~a~~~~~~al~~~  121 (366)
T d1hz4a_          90 ALWSLIQQSEILFAQG-FLQTAWETQEKAFQLI  121 (366)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence            1223335788888998 9999999999987653

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=1.4e-07  Score=76.75  Aligned_cols=120  Identities=5%  Similarity=-0.077  Sum_probs=99.3

Q ss_pred             CCChHHHHHHHHhhcCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHH-hcCCHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQED-FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQ-HDCCFKEAVQF   78 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~~-~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~-~~Gr~~eai~~   78 (192)
                      .|+.++++..+.+++...|.+. .++..++..+...|.+++|++.+.+|+...|.+...+...+.... ..|+.+.|...
T Consensus       112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i  191 (308)
T d2onda1         112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI  191 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHH
Confidence            3778888999999999888764 466777888888889999999999999999999888888776543 46888999999


Q ss_pred             HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++++...|+++     ..|...+.++...| ++++|..+|++++...
T Consensus       192 ~e~~l~~~p~~~-----~~w~~y~~~~~~~g-~~~~aR~~fe~ai~~~  233 (308)
T d2onda1         192 FELGLKKYGDIP-----EYVLAYIDYLSHLN-EDNNTRVLFERVLTSG  233 (308)
T ss_dssp             HHHHHHHHTTCH-----HHHHHHHHHHHTTC-CHHHHHHHHHHHHHSS
T ss_pred             HHHHHHhhhhhH-----HHHHHHHHHHHHcC-ChHHHHHHHHHHHHhC
Confidence            999999888853     36667888888898 8999999999998863

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.68  E-value=1e-07  Score=76.90  Aligned_cols=124  Identities=10%  Similarity=-0.019  Sum_probs=101.2

Q ss_pred             CCChHHHHHHHHhhcCCCCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHhcccCCC------HHHHHHHHHHHH
Q 029491            1 MGRPDLCFDIIHQVLPYNQQE------DFIFGILAFSLLE-LGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQ   67 (192)
Q Consensus         1 ~G~~~~al~~~~ral~~~p~~------~~~~~~laf~L~e-~g~~~eAe~~~rrALaL~P~d------a~A~h~lahvl~   67 (192)
                      +|++.+|+..+.+++.+.+..      ..++..+|-++.. .|++++|++.+++|+.+.+.+      ..++..+|.++.
T Consensus        90 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~  169 (290)
T d1qqea_          90 GGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA  169 (290)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Confidence            589999999999999876543      4667777777754 699999999999999986543      456889999999


Q ss_pred             hcCCHHHHHHHHHHhHhhccCCCCcchh---hhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           68 HDCCFKEAVQFMEECSSTWSSCSSFMYT---HNWWHVALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        68 ~~Gr~~eai~~~~~a~~~~p~~~~~~~~---h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      .+|++++|+..+++++...|..+. ...   ....+.+++++..| +++.|...+++.+...
T Consensus       170 ~~g~y~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~-d~~~A~~~~~~~~~~~  229 (290)
T d1qqea_         170 LDGQYIEASDIYSKLIKSSMGNRL-SQWSLKDYFLKKGLCQLAAT-DAVAAARTLQEGQSED  229 (290)
T ss_dssp             HTTCHHHHHHHHHHHHHTTSSCTT-TGGGHHHHHHHHHHHHHHTT-CHHHHHHHHHGGGCC-
T ss_pred             HcChHHHHHHHHHHHHHhCccchh-hhhhHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhC
Confidence            999999999999999999888653 121   23346888889998 8999999999988764

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=3e-08  Score=86.77  Aligned_cols=86  Identities=8%  Similarity=-0.071  Sum_probs=69.2

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE   81 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~   81 (192)
                      |+..++....++++..+|  ..++..+|.++...|++++|+..+++|+.++|+++.+++.+|.++..+|++.+|+.+|.+
T Consensus       134 ~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~r  211 (497)
T d1ya0a1         134 THTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR  211 (497)
T ss_dssp             ---------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            455666666666665544  356778999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhccCC
Q 029491           82 CSSTWSSC   89 (192)
Q Consensus        82 a~~~~p~~   89 (192)
                      ++...|..
T Consensus       212 al~~~~~~  219 (497)
T d1ya0a1         212 SIAVKFPF  219 (497)
T ss_dssp             HHSSSBCC
T ss_pred             HHhCCCCC
Confidence            99887764

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.43  E-value=2.3e-06  Score=69.22  Aligned_cols=122  Identities=11%  Similarity=-0.066  Sum_probs=101.5

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLL-ELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME   80 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~-e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~   80 (192)
                      |+.++++..+.+++...|..+..+...|+... ..|+.+.|...+++++..+|+++..+...+..+..+|++++|...++
T Consensus       148 ~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe  227 (308)
T d2onda1         148 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE  227 (308)
T ss_dssp             HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            56788999999999999999988888887543 46899999999999999999999999999999999999999999999


Q ss_pred             HhHhhccCCCCcchhhhHHH-HHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491           81 ECSSTWSSCSSFMYTHNWWH-VALCYLEGHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        81 ~a~~~~p~~~~~~~~h~~Wh-lAl~~l~~G~~~deAl~~yd~~i~~~  126 (192)
                      +++...|..+.  .....|. ...+....| +.+.+..+++++...-
T Consensus       228 ~ai~~~~~~~~--~~~~iw~~~~~fE~~~G-~~~~~~~~~~r~~~~~  271 (308)
T d2onda1         228 RVLTSGSLPPE--KSGEIWARFLAFESNIG-DLASILKVEKRRFTAF  271 (308)
T ss_dssp             HHHHSSSSCGG--GCHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCChH--HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHC
Confidence            99998776542  2223343 344445568 8999999999887653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.32  E-value=3.9e-07  Score=74.14  Aligned_cols=83  Identities=13%  Similarity=0.066  Sum_probs=66.4

Q ss_pred             HHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCC
Q 029491           32 LLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSP  111 (192)
Q Consensus        32 L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~  111 (192)
                      ....|++++|++.++++|+.+|+|+.+...++.++..+|++++|+..+++++++.|+..   .  .+..++..+...+ .
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~---~--~~~~l~~ll~a~~-~   79 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL---P--GASQLRHLVKAAQ-A   79 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH---H--HHHHHHHHHHHHH-H
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH---H--HHHHHHHHHHhcc-c
Confidence            34679999999999999999999999999999999999999999999999999999853   2  2223555554444 4


Q ss_pred             HHHHHHHHH
Q 029491          112 MRKVLEIYD  120 (192)
Q Consensus       112 ~deAl~~yd  120 (192)
                      .+++...+.
T Consensus        80 ~~~a~~~~~   88 (264)
T d1zbpa1          80 RKDFAQGAA   88 (264)
T ss_dssp             HHHHTTSCC
T ss_pred             cHHHHHHhh
Confidence            555554433

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=0.00019  Score=51.90  Aligned_cols=69  Identities=7%  Similarity=-0.188  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHhcccCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCC
Q 029491           22 DFIFGILAFSLLELG---QMSDAEEAAKKGLKINKHDC-WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS   90 (192)
Q Consensus        22 ~~~~~~laf~L~e~g---~~~eAe~~~rrALaL~P~da-~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~   90 (192)
                      ....+.+|++|....   +.++|+.+.+..+..+|.+. ..+..+|.++...|++++|..++++++++.|++.
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~  107 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  107 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence            578899999998765   45679999999999999775 8999999999999999999999999999999964

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.33  E-value=0.0015  Score=46.11  Aligned_cols=110  Identities=6%  Similarity=-0.059  Sum_probs=84.8

Q ss_pred             ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 029491            3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCFKEAVQF   78 (192)
Q Consensus         3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~----~Gr~~eai~~   78 (192)
                      ++.+|+.+++++...  +++.+...++.  ....++++|...+++|.+  .+++.+...+|..+..    .-+.++|+.+
T Consensus         8 d~~~A~~~~~kaa~~--g~~~a~~~l~~--~~~~~~~~a~~~~~~aa~--~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~   81 (133)
T d1klxa_           8 DLKKAIQYYVKACEL--NEMFGCLSLVS--NSQINKQKLFQYLSKACE--LNSGNGCRFLGDFYENGKYVKKDLRKAAQY   81 (133)
T ss_dssp             HHHHHHHHHHHHHHT--TCTTHHHHHHT--CTTSCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHC--CChhhhhhhcc--ccccCHHHHHHHHhhhhc--ccchhhhhhHHHhhhhccccchhhHHHHHH
Confidence            467899999999876  45555555543  345689999999999976  5799999999998875    4568999999


Q ss_pred             HHHhHhhccCCCCcchhhhHHHHHHHHHh----CCCCHHHHHHHHHHhhhhh
Q 029491           79 MEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~----~G~~~deAl~~yd~~i~~~  126 (192)
                      ++++......     .  ....+|..++.    .. ++++|+.+|+++....
T Consensus        82 ~~~aa~~g~~-----~--a~~~Lg~~y~~G~gv~~-d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          82 YSKACGLNDQ-----D--GCLILGYKQYAGKGVVK-NEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHTTCH-----H--HHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT
T ss_pred             HhhhhccCcc-----h--HHHHHHHHHHcCCccCC-CHHHHHHHHHHHHHCC
Confidence            9999876321     2  23358988876    23 7999999999988764

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.29  E-value=0.00069  Score=48.84  Aligned_cols=77  Identities=6%  Similarity=-0.096  Sum_probs=57.0

Q ss_pred             HHHHHHhcccCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHH
Q 029491           43 EAAKKGLKINKHDCWSQHALCHVLQHD---CCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIY  119 (192)
Q Consensus        43 ~~~rrALaL~P~da~A~h~lahvl~~~---Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~y  119 (192)
                      ..+.+.+.-.|. +.+.++.|+++...   .+.++||..+++.++..|..    ....++++|+.|+.+| +|++|.+.+
T Consensus        23 ~q~~~e~~~~~s-~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~----~rd~lY~Lav~yyklg-dy~~A~~~~   96 (124)
T d2pqrb1          23 QQVVSEGGPTAT-IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR----RRECLYYLTIGCYKLG-EYSMAKRYV   96 (124)
T ss_dssp             HHHHHTTGGGSC-HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHHHHHT-CHHHHHHHH
T ss_pred             HHHHHHhCCCCC-cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchh----HHHHHHHHHHHHHHHh-hHHHHHHHH
Confidence            333444333344 78889999999855   44568999999999887653    2345667999999998 899999999


Q ss_pred             HHhhhh
Q 029491          120 DNHIWK  125 (192)
Q Consensus       120 d~~i~~  125 (192)
                      ++.+..
T Consensus        97 ~~~L~i  102 (124)
T d2pqrb1          97 DTLFEH  102 (124)
T ss_dssp             HHHHHH
T ss_pred             HHHHcc
Confidence            998865

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.16  E-value=0.0051  Score=47.09  Aligned_cols=95  Identities=13%  Similarity=0.049  Sum_probs=61.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhHhhccCCCCcchhh
Q 029491           21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCFKEAVQFMEECSSTWSSCSSFMYTH   96 (192)
Q Consensus        21 ~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~----~Gr~~eai~~~~~a~~~~p~~~~~~~~h   96 (192)
                      ||.++..+|..+...|++++|++.+++|..  .+|+.|+..||.++..    ..+...++.+++.+......     ...
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~--~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~-----~a~   73 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS-----NGC   73 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH-----HHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc-----chh
Confidence            456667777777777788888888887754  4577777778877776    55777777777777654311     111


Q ss_pred             hHHHHHHHHHh----CCCCHHHHHHHHHHhhhh
Q 029491           97 NWWHVALCYLE----GHSPMRKVLEIYDNHIWK  125 (192)
Q Consensus        97 ~~WhlAl~~l~----~G~~~deAl~~yd~~i~~  125 (192)
                      .  .++..+..    .. +++.|...|++.+..
T Consensus        74 ~--~l~~~~~~~~~~~~-~~~~a~~~~~~a~~~  103 (265)
T d1ouva_          74 H--LLGNLYYSGQGVSQ-NTNKALQYYSKACDL  103 (265)
T ss_dssp             H--HHHHHHHHTSSSCC-CHHHHHHHHHHHHHT
T ss_pred             h--ccccccccccccch-hhHHHHHHHhhhhhh
Confidence            1  25554432    23 667777777766654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.79  E-value=0.0087  Score=41.90  Aligned_cols=81  Identities=12%  Similarity=-0.071  Sum_probs=67.8

Q ss_pred             CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh----cCCHH
Q 029491            2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE----LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCFK   73 (192)
Q Consensus         2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e----~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~----~Gr~~   73 (192)
                      .+.++++..++++...  +++.+...+|..+..    ..++++|...+++|...  +++.|...||.++..    ..+.+
T Consensus        37 ~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~  112 (133)
T d1klxa_          37 INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEK  112 (133)
T ss_dssp             SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             cCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHH
Confidence            3567888888888764  788999999998865    45789999999999865  789999999998876    45899


Q ss_pred             HHHHHHHHhHhhc
Q 029491           74 EAVQFMEECSSTW   86 (192)
Q Consensus        74 eai~~~~~a~~~~   86 (192)
                      +|+.+++++.+.-
T Consensus       113 ~A~~~~~~Aa~~G  125 (133)
T d1klxa_         113 QAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCC
Confidence            9999999998763

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.54  E-value=0.013  Score=44.58  Aligned_cols=98  Identities=11%  Similarity=0.035  Sum_probs=77.4

Q ss_pred             CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhHhhccCCC
Q 029491           19 QQEDFIFGILAFSLLE----LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCFKEAVQFMEECSSTWSSCS   90 (192)
Q Consensus        19 p~~~~~~~~laf~L~e----~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~----~Gr~~eai~~~~~a~~~~p~~~   90 (192)
                      +.++..+.++|..+..    ..+...+....+++.  +++++.|+..+|.++..    ..++++|+.+++++.+....  
T Consensus       139 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~--~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~--  214 (265)
T d1ouva_         139 LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKAC--DLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENG--  214 (265)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCH--
T ss_pred             ccccchhhhhhhhhccCCCcccccccchhhhhccc--cccccccccchhhhcccCcccccchhhhhhhHhhhhcccCH--
Confidence            4667777888888876    456667777777776  57899999999999887    67899999999999987322  


Q ss_pred             CcchhhhHHHHHHHHHh----CCCCHHHHHHHHHHhhhhh
Q 029491           91 SFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWKE  126 (192)
Q Consensus        91 ~~~~~h~~WhlAl~~l~----~G~~~deAl~~yd~~i~~~  126 (192)
                           -..+++|.++..    .. ++++|..+|++++...
T Consensus       215 -----~a~~~LG~~y~~G~g~~~-n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         215 -----GGCFNLGAMQYNGEGVTR-NEKQAIENFKKGCKLG  248 (265)
T ss_dssp             -----HHHHHHHHHHHTTSSSSC-CSTTHHHHHHHHHHHT
T ss_pred             -----HHHHHHHHHHHcCCCCcc-CHHHHHHHHHHHHHCc
Confidence                 244569998875    23 6899999999998874