Citrus Sinensis ID: 029494

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
Protein Sequence
MASTSAFTAQISSIHWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSLRVYGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGLSEGLK
Secondary Structure (PSIPRED)
cccccccHHcccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccEEEEEEEEcccEEEEEEcHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHccccccccccccccccccccccccccccEccccccccccccccEEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEcccccEEEEEEEcccccEEEEEcHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
MASTSAFTAQISsihwkkptsssnfsnnlnlnsnlagkemlsfssqqksghqfRSLRVYglfggkkdnnekgddapskagiLGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTlsgnqqpvRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQslgmpqglseglk
Flexible Loop (DISEMBL)
mastsaftaqissihwkkptsssnfsNNLNLNSNLAGKEMLSFssqqksghqfRSLRVYGLFggkkdnnekgddapskAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKvtlsgnqqpVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLaqslgmpqglseglk
Low Complexity Region (SEG)
MASTSAFTAQISSIHWKKPTsssnfsnnlnlnsnlAGKEMLSFSSQQKSGHQFRSLRVYGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGLSEGLK
Disordered region (IsUnstruct)
*******************************************************LRVYGLF******************ILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAY*********************************
Disordered Region (DISOPRED)
*********QISSIHWKKP****************AGKEM*****************VY**********************************************************YCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDA**********************QGLS****
Disordered Region (DISEMBL)
***********SSIHWKKPTSSSNFSNNLNLNSNLAGKEMLS***********RSLRVYGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSL***********
Disordered Region (DISPRO)
***********SSI******SSSNFSNNLNLNSNLAGKEMLSFSSQ*K*GHQFRSLRVYGLFGGKK**********SKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKER**DL**SLGMPQ*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASTSAFTAQISSIHWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSLRVYGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGLSEGLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	192	2.2.26 [Sep-21-2011]
Q8GMT0	113	Nucleoid-associated prote	no	no	0.531	0.902	0.504	1e-17
Q5N376	113	Nucleoid-associated prote	yes	no	0.531	0.902	0.504	1e-17
Q8YM73	115	Nucleoid-associated prote	yes	no	0.531	0.886	0.504	4e-17
Q3MAP6	115	Nucleoid-associated prote	yes	no	0.531	0.886	0.504	1e-16
B2J719	115	Nucleoid-associated prote	yes	no	0.531	0.886	0.485	2e-15
B8HWY2	114	Nucleoid-associated prote	yes	no	0.520	0.877	0.435	1e-13
Q8DKX6	115	Nucleoid-associated prote	yes	no	0.520	0.869	0.425	5e-13
A2BTV8	116	Nucleoid-associated prote	yes	no	0.526	0.870	0.401	2e-12
Q7V3Q0	116	Nucleoid-associated prote	yes	no	0.526	0.870	0.401	3e-12
A9B9L9	115	Nucleoid-associated prote	yes	no	0.526	0.878	0.411	4e-12

>sp|Q8GMT0|Y464_SYNE7 Nucleoid-associated protein Synpcc7942_0464 OS=Synechococcus elongatus (strain PCC 7942) GN=Synpcc7942_0464 PE=3 SV=2

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 67/103 (65%), Gaps = 1/103 (0%)

Query: 82  LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
           LG M+ L +  KKAQ V Q  A +VQ++L   E +G  +G L+KV +SGNQ+P+R EI  
Sbjct: 10  LGKMKELADAFKKAQQV-QEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAP 68

Query: 142 AAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMP 184
            A+  GAE LS LV  A KDA+QKS  AMKE+M  L   LG+P
Sbjct: 69  EALNEGAEVLSELVAAAMKDAYQKSTAAMKEKMEALTAGLGIP 111

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

>sp|Q5N376|Y1054_SYNP6 Nucleoid-associated protein syc1054_d OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc1054_d PE=3 SV=1

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 67/103 (65%), Gaps = 1/103 (0%)

Query: 82  LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
           LG M+ L +  KKAQ V Q  A +VQ++L   E +G  +G L+KV +SGNQ+P+R EI  
Sbjct: 10  LGKMKELADAFKKAQQV-QEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAP 68

Query: 142 AAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMP 184
            A+  GAE LS LV  A KDA+QKS  AMKE+M  L   LG+P
Sbjct: 69  EALNEGAEVLSELVAAAMKDAYQKSTAAMKEKMEALTAGLGIP 111

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

>sp|Q8YM73|Y5067_NOSS1 Nucleoid-associated protein alr5067 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr5067 PE=3 SV=1

 Score = 87.8 bits (216), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 64/103 (62%), Gaps = 1/103 (0%)

Query: 82  LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
           LG M+ L E  KKAQ V Q  A R+Q+EL   E  G   G L+KV +SGNQ+P R EI+ 
Sbjct: 12  LGKMKELAEAFKKAQQV-QEGAKRLQEELEQMEIQGEAGGGLVKVIVSGNQEPKRVEISP 70

Query: 142 AAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMP 184
            A+  GA+ LS LVT A KDA+ KS   M+ERM DL   L +P
Sbjct: 71  DALAQGADLLSDLVTAAMKDAYIKSTATMRERMEDLTSGLELP 113

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q3MAP6|Y2322_ANAVT Nucleoid-associated protein Ava_2322 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_2322 PE=3 SV=1

 Score = 86.3 bits (212), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 64/103 (62%), Gaps = 1/103 (0%)

Query: 82  LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
           LG M+ L E  KKAQ V Q  A R+Q+EL   E  G   G L+KV +SGNQ+P R EI+ 
Sbjct: 12  LGKMKELAEAFKKAQQV-QEGAKRLQEELEQMEILGEAGGGLVKVIVSGNQEPKRVEISP 70

Query: 142 AAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMP 184
            A+  GA+ LS LVT A KDA+ KS   M+ERM DL   L +P
Sbjct: 71  DALAQGADLLSDLVTAAMKDAYIKSTATMRERMEDLTSGLELP 113

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

>sp|B2J719|Y448_NOSP7 Nucleoid-associated protein Npun_F0448 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=Npun_F0448 PE=3 SV=1

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 64/103 (62%), Gaps = 1/103 (0%)

Query: 82  LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
           LG M+ L +  KKAQ V Q  A R+Q+EL   E  G   G L+KV +SGNQ+P R EI+ 
Sbjct: 12  LGKMKELADAFKKAQQV-QEGAKRLQEELEQMEILGESGGGLVKVIVSGNQEPKRVEISP 70

Query: 142 AAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMP 184
            A+  GAE LS LVT A K+A+ KS   M+ERM +L   L +P
Sbjct: 71  DALAEGAEVLSDLVTVAMKEAYNKSTATMRERMEELTSGLELP 113

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

>sp|B8HWY2|Y899_CYAP4 Nucleoid-associated protein Cyan7425_0899 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=Cyan7425_0899 PE=3 SV=1

 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 62/101 (61%), Gaps = 1/101 (0%)

Query: 84  NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAA 143
            M+ L   ++KAQ V Q  A ++Q++L   E +G   G L+KV +SGNQ+P R EI+   
Sbjct: 13  KMKELAAAIQKAQQV-QEGAKKLQEDLEKMEIEGVAAGGLVKVIMSGNQEPRRVEISPDL 71

Query: 144 MELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMP 184
           M  GAE ++ LVT A KDA+ KS   M+ERM +L   L +P
Sbjct: 72  MSEGAEVVADLVTAAMKDAYLKSTTTMRERMEELTGGLSLP 112

Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961)

>sp|Q8DKX6|Y723_THEEB Nucleoid-associated protein tlr0723 OS=Thermosynechococcus elongatus (strain BP-1) GN=tlr0723 PE=3 SV=1

 Score = 73.9 bits (180), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 1/101 (0%)

Query: 84  NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAA 143
            M+ L   ++KAQ V Q  A ++Q++L   + +G   G  +KV +SG Q+P R EI+   
Sbjct: 13  KMKELAAAIQKAQQV-QEGAKKLQEDLERMDIEGQAAGGAVKVIMSGTQEPRRVEISPDL 71

Query: 144 MELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMP 184
           +  GAE LS LVT A +DA+QKS   M+ERM +L  SL +P
Sbjct: 72  LSEGAEVLSDLVTAAMRDAYQKSTATMRERMEELTGSLNVP 112

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

>sp|A2BTV8|Y019_PROM5 Nucleoid-associated protein P9515_00191 OS=Prochlorococcus marinus (strain MIT 9515) GN=P9515_00191 PE=3 SV=1

 Score = 72.4 bits (176), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 59/102 (57%), Gaps = 1/102 (0%)

Query: 82  LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
           L N   L E  KKA+  +Q  A ++Q EL + E +G  + E+IKV +SGNQ P+R E+ +
Sbjct: 6   LPNFGQLTEAFKKAK-EIQQNAQKLQDELESMEIEGKSDDEMIKVWISGNQLPLRVEVKD 64

Query: 142 AAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGM 183
              E   E++   + EA K AH+ S   MKERM+DL   L +
Sbjct: 65  TIAESNKEEIEKNILEAIKKAHETSTTTMKERMNDLTGGLNL 106

Prochlorococcus marinus (strain MIT 9515) (taxid: 167542)

>sp|Q7V3Q0|Y020_PROMP Nucleoid-associated protein PMM0020 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=PMM0020 PE=3 SV=1

 Score = 71.6 bits (174), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 1/102 (0%)

Query: 82  LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
           L N   L E  KKA+  +Q  A ++Q EL + E +G  + E+IKV +SGNQ P+R E+ E
Sbjct: 6   LPNFGQLTEAFKKAK-EIQQNAQKLQDELESMEIEGKSDDEMIKVWISGNQLPLRVEVNE 64

Query: 142 AAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGM 183
                  E++   + EA K AH+ S   MKERM+DL   L +
Sbjct: 65  NISTANKEEIEKNILEAIKKAHESSTTTMKERMNDLTGGLNL 106

Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) (taxid: 59919)

>sp|A9B9L9|Y020_PROM4 Nucleoid-associated protein P9211_00201 OS=Prochlorococcus marinus (strain MIT 9211) GN=P9211_00201 PE=3 SV=1

 Score = 70.9 bits (172), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/102 (41%), Positives = 59/102 (57%), Gaps = 1/102 (0%)

Query: 82  LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
           L N   L E  KKAQ + Q +A ++Q+EL A E +G  +   + + LSGNQ P+R EI  
Sbjct: 6   LPNFGQLTEAFKKAQQIQQ-DAQKLQEELDAMELEGKNQDGRVSICLSGNQLPLRIEIDP 64

Query: 142 AAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGM 183
           + +  G EK  + + EA KDAH+ S   MKERM +L   L +
Sbjct: 65  SILLEGKEKAEIAILEALKDAHELSTSTMKERMQELTGGLNL 106

Prochlorococcus marinus (strain MIT 9211) (taxid: 93059)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
224142377	196	predicted protein [Populus trichocarpa]	1.0	0.979	0.775	3e-82
255577037	195	conserved hypothetical protein [Ricinus	0.994	0.979	0.775	3e-78
225445842	196	PREDICTED: UPF0133 protein Synpcc7942_04	1.0	0.979	0.765	1e-76
356543329	196	PREDICTED: UPF0133 protein Synpcc7942_04	1.0	0.979	0.729	1e-73
351724105	195	uncharacterized protein LOC100305795 [Gl	0.994	0.979	0.709	4e-70
449457887	187	PREDICTED: nucleoid-associated protein S	0.963	0.989	0.737	1e-68
388500608	188	unknown [Lotus japonicus]	0.979	1.0	0.692	1e-67
388507246	188	unknown [Lotus japonicus]	0.979	1.0	0.687	4e-67
223948417	186	unknown [Zea mays] gi|413926357|gb|AFW66	0.963	0.994	0.689	1e-66
413935880	265	hypothetical protein ZEAMMB73_296576 [Ze	0.968	0.701	0.666	9e-66

>gi|224142377|ref|XP_002324535.1| predicted protein [Populus trichocarpa] gi|222865969|gb|EEF03100.1| predicted protein [Populus trichocarpa]

 Score =  309 bits (792), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 152/196 (77%), Positives = 173/196 (88%), Gaps = 4/196 (2%)

Query: 1   MASTSAFTAQISSIH----WKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSL 56
           MAST+A TAQ+++++    WK+P  +S    NLNLN+N+ GK++LS+S +QKS   +RS 
Sbjct: 1   MASTTAVTAQVTNLNGLGDWKRPFPASLPLGNLNLNANVVGKQLLSWSGKQKSERNYRSF 60

Query: 57  RVYGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 116
           RV GLFGGKK+N+EK DDAPSKAGI GNMQNLYETVKKAQMVVQVEAVRVQKELA+AEFD
Sbjct: 61  RVIGLFGGKKENSEKSDDAPSKAGIFGNMQNLYETVKKAQMVVQVEAVRVQKELASAEFD 120

Query: 117 GYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSD 176
           GYCEGELIKVTL+GNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSV AMKERM+D
Sbjct: 121 GYCEGELIKVTLTGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVQAMKERMND 180

Query: 177 LAQSLGMPQGLSEGLK 192
           LAQSLGMP G+ EGLK
Sbjct: 181 LAQSLGMPPGVGEGLK 196

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577037|ref|XP_002529403.1| conserved hypothetical protein [Ricinus communis] gi|223531151|gb|EEF32999.1| conserved hypothetical protein [Ricinus communis]

 Score =  296 bits (758), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 152/196 (77%), Positives = 169/196 (86%), Gaps = 5/196 (2%)

Query: 1   MASTSAFTAQISSIH----WKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSL 56
           MASTSA  A++S+++    WKKP  SS    NL+LN+NL G++++S+   QKS    RSL
Sbjct: 1   MASTSAVAARVSNLNGLADWKKPNHSSFPIGNLSLNANLVGQQLVSWPGHQKSRRCSRSL 60

Query: 57  RVYGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 116
           RV+GLFGGKKDNNEK D+  SKAGILGNMQNLYETVKKAQMVVQVEAV+VQKELA AEFD
Sbjct: 61  RVHGLFGGKKDNNEKSDEQ-SKAGILGNMQNLYETVKKAQMVVQVEAVKVQKELALAEFD 119

Query: 117 GYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSD 176
           GYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLV EAYKDAHQKSV AMKERMSD
Sbjct: 120 GYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVNEAYKDAHQKSVQAMKERMSD 179

Query: 177 LAQSLGMPQGLSEGLK 192
           LAQSLGMP G+S+GLK
Sbjct: 180 LAQSLGMPPGMSDGLK 195

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445842|ref|XP_002277907.1| PREDICTED: UPF0133 protein Synpcc7942_0464 [Vitis vinifera] gi|297743656|emb|CBI36539.3| unnamed protein product [Vitis vinifera]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 150/196 (76%), Positives = 162/196 (82%), Gaps = 4/196 (2%)

Query: 1   MASTSAFTAQISSI----HWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSL 56
           MASTSA T QIS++      K  TSSS F   L+ N+NL    M    +  + G+  RS+
Sbjct: 1   MASTSALTTQISNLCGFTDCKNTTSSSLFFCKLSPNTNLVSTRMFCQYADSRMGNNRRSV 60

Query: 57  RVYGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 116
           RVYGLFGG K+N+EKGDDA SKAG LGNMQNLYETVKKAQMVVQVEAV+VQKELA AEFD
Sbjct: 61  RVYGLFGGNKENSEKGDDARSKAGFLGNMQNLYETVKKAQMVVQVEAVKVQKELAEAEFD 120

Query: 117 GYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSD 176
           GYCEGELIKVTLSGNQQPVRTEITEAAMELG EKLSLLVTEAYKDAHQKSV AMKERM+D
Sbjct: 121 GYCEGELIKVTLSGNQQPVRTEITEAAMELGPEKLSLLVTEAYKDAHQKSVQAMKERMND 180

Query: 177 LAQSLGMPQGLSEGLK 192
           LAQSLGMPQGLSEGLK
Sbjct: 181 LAQSLGMPQGLSEGLK 196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543329|ref|XP_003540114.1| PREDICTED: UPF0133 protein Synpcc7942_0464-like [Glycine max]

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 143/196 (72%), Positives = 156/196 (79%), Gaps = 4/196 (2%)

Query: 1   MASTSAFTAQISSI----HWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSL 56
           M +T   T  +S+      WKK    S     L+ NSN+   ++LS    QK G+  R  
Sbjct: 1   MTTTPCVTGALSNAVGFRDWKKHVPLSASLCKLSFNSNIVDMKILSRCGCQKVGNDQRCF 60

Query: 57  RVYGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 116
           R+Y LFGGKKDN+ K DDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD
Sbjct: 61  RLYALFGGKKDNSGKSDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 120

Query: 117 GYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSD 176
           GYCEGEL+KVTLSGNQQPVRTEITEAAMELG EKLSLL+TEAYKDAHQKSV AMKERM+D
Sbjct: 121 GYCEGELVKVTLSGNQQPVRTEITEAAMELGPEKLSLLITEAYKDAHQKSVQAMKERMND 180

Query: 177 LAQSLGMPQGLSEGLK 192
           LAQSLGMP GLSEGLK
Sbjct: 181 LAQSLGMPPGLSEGLK 196

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724105|ref|NP_001236790.1| uncharacterized protein LOC100305795 [Glycine max] gi|255626621|gb|ACU13655.1| unknown [Glycine max]

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 139/196 (70%), Positives = 154/196 (78%), Gaps = 5/196 (2%)

Query: 1   MASTSAFTAQISSI----HWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSL 56
           M +  + T  +S+      WKK    S     L+ +SN+   + +S    +K GH  R  
Sbjct: 1   MTTAPSLTGPLSNAVGFSDWKKHAPLSASLCKLSSSSNIVDMK-ISRCGCRKVGHGQRCF 59

Query: 57  RVYGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 116
           R+Y LFGGKKDNN K DD PSKAGILGNMQNLYETVKKAQMVVQVEA RVQKELAAAEFD
Sbjct: 60  RLYALFGGKKDNNGKSDDVPSKAGILGNMQNLYETVKKAQMVVQVEAARVQKELAAAEFD 119

Query: 117 GYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSD 176
           GYCEGEL+KVTLSGNQQPVRTEITEAAMELG+EKLSLL+TEAYKDAHQKSV AMKERM+D
Sbjct: 120 GYCEGELVKVTLSGNQQPVRTEITEAAMELGSEKLSLLITEAYKDAHQKSVQAMKERMND 179

Query: 177 LAQSLGMPQGLSEGLK 192
           LAQSLGMP GLSEGLK
Sbjct: 180 LAQSLGMPPGLSEGLK 195

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457887|ref|XP_004146679.1| PREDICTED: nucleoid-associated protein Synpcc7942_0464-like [Cucumis sativus] gi|449503169|ref|XP_004161868.1| PREDICTED: nucleoid-associated protein Synpcc7942_0464-like [Cucumis sativus]

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 143/194 (73%), Positives = 154/194 (79%), Gaps = 9/194 (4%)

Query: 1   MASTSAFTAQISSIHWKKPTSSSNFSNNLNLNS--NLAGKEMLSFSSQQKSGHQFRSLRV 58
           MAST + +AQ+ ++        S+F    NLNS  N+ G   LS     K     RSL V
Sbjct: 1   MASTISLSAQLPNLR-----GISDFKKRSNLNSMSNIVGTR-LSPYGPWKVEKNNRSLCV 54

Query: 59  YGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGY 118
           YGLFGGKKD  EK DDAPSKAGI GNMQ LYETV+ AQ VVQVEAVRVQKELAAAEFDGY
Sbjct: 55  YGLFGGKKDE-EKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGY 113

Query: 119 CEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLA 178
           CEGELIKVTLSGNQQP+RTEITEAAMELG EKLSLLVTEAY+DAHQKSVLAMK+RMSDLA
Sbjct: 114 CEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLA 173

Query: 179 QSLGMPQGLSEGLK 192
           QSLGMPQGLSEGLK
Sbjct: 174 QSLGMPQGLSEGLK 187

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500608|gb|AFK38370.1| unknown [Lotus japonicus]

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 133/192 (69%), Positives = 154/192 (80%), Gaps = 4/192 (2%)

Query: 1   MASTSAFTAQISSIHWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSLRVYG 60
           MAST +    I        T SS     LN +S++   ++L  S  +K+GH  R LR+YG
Sbjct: 1   MASTVSLPNAIGLCPRNNHTLSSTSHCKLNSSSSIVDMKILPQSGSRKAGHGQRHLRLYG 60

Query: 61  LFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCE 120
           LFGGKKD    GDD+ +K GILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCE
Sbjct: 61  LFGGKKD----GDDSSNKGGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCE 116

Query: 121 GELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQS 180
           GEL+KVTLSGNQQP+RTEITEAAME G+EKLSLL+TEAYKDAHQKSV AMKER+SDLAQS
Sbjct: 117 GELVKVTLSGNQQPLRTEITEAAMEFGSEKLSLLITEAYKDAHQKSVQAMKERISDLAQS 176

Query: 181 LGMPQGLSEGLK 192
           LG+P+G++EG+K
Sbjct: 177 LGVPEGINEGMK 188

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507246|gb|AFK41689.1| unknown [Lotus japonicus]

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 132/192 (68%), Positives = 152/192 (79%), Gaps = 4/192 (2%)

Query: 1   MASTSAFTAQISSIHWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSLRVYG 60
           MAST +    I        T SS     LN +S++   ++L  S  +K GH  R LR+YG
Sbjct: 1   MASTVSLPNAIGLCPRNNHTLSSTSHCKLNSSSSIVDMKILPQSGSRKVGHGQRHLRLYG 60

Query: 61  LFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCE 120
           LFGGKKD    GDD+P+K  ILGNMQNLYETVKKAQMVVQVEAVRVQKELAA EFDGYCE
Sbjct: 61  LFGGKKD----GDDSPNKGRILGNMQNLYETVKKAQMVVQVEAVRVQKELAATEFDGYCE 116

Query: 121 GELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQS 180
           GEL+KVTLSGNQQP+RTEITEAAME G+EKLSLL+TEAY+DAHQKSV AMKERMSDLAQS
Sbjct: 117 GELVKVTLSGNQQPLRTEITEAAMEFGSEKLSLLITEAYRDAHQKSVQAMKERMSDLAQS 176

Query: 181 LGMPQGLSEGLK 192
           LG+P+G++EG+K
Sbjct: 177 LGVPEGINEGMK 188

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223948417|gb|ACN28292.1| unknown [Zea mays] gi|413926357|gb|AFW66289.1| hypothetical protein ZEAMMB73_706905 [Zea mays]

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 129/187 (68%), Positives = 149/187 (79%), Gaps = 2/187 (1%)

Query: 6   AFTAQISSIHWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSLRVYGLFGGK 65
           A +A ++ + ++   S+   SN      N+ G   L  S+++++   +RS RVY LFGGK
Sbjct: 2   APSAALAPVAFRSAFSTPLASNPTRNRINIEGTFCLPCSARKRA--SYRSFRVYSLFGGK 59

Query: 66  KDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIK 125
           KD +E GD+APSKAGI GNMQNLYETVKKAQMVVQVEAVRVQKELAA E DGYCEGELIK
Sbjct: 60  KDKDENGDEAPSKAGIFGNMQNLYETVKKAQMVVQVEAVRVQKELAATEIDGYCEGELIK 119

Query: 126 VTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQ 185
           VTLSGNQQP+R EITEAAMELGAEKLS LV +AYKDAHQ+SV AMKERMSDLAQSLGMP 
Sbjct: 120 VTLSGNQQPIRVEITEAAMELGAEKLSELVNDAYKDAHQRSVQAMKERMSDLAQSLGMPA 179

Query: 186 GLSEGLK 192
           GL +GLK
Sbjct: 180 GLGDGLK 186

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413935880|gb|AFW70431.1| hypothetical protein ZEAMMB73_296576 [Zea mays]

 Score =  254 bits (650), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 128/192 (66%), Positives = 147/192 (76%), Gaps = 6/192 (3%)

Query: 1   MASTSAFTAQISSIHWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSLRVYG 60
           MA ++A         +  P +S    N +N+     G   L  S+++++   +R  RVY 
Sbjct: 80  MAPSTALAPVAFRSAFSTPLASKPTRNRMNIE----GAFCLPCSTRKRA--SYRPFRVYS 133

Query: 61  LFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCE 120
           LFGGKKD +E GD+APSKAGI GNMQNLYETVKKAQMVVQVEAVRVQKELAA E DGYCE
Sbjct: 134 LFGGKKDKDENGDEAPSKAGIFGNMQNLYETVKKAQMVVQVEAVRVQKELAATEIDGYCE 193

Query: 121 GELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQS 180
           GELIKVTLSGNQQP+R EITEAAMELGAEKLS LV +AYKDAHQ+SV AMKERM+DLAQS
Sbjct: 194 GELIKVTLSGNQQPIRVEITEAAMELGAEKLSGLVNDAYKDAHQRSVQAMKERMADLAQS 253

Query: 181 LGMPQGLSEGLK 192
           LGMP GL +GLK
Sbjct: 254 LGMPAGLGDGLK 265

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
TAIR|locus:2061471	182	AT2G24020 "AT2G24020" [Arabido	0.776	0.818	0.802	6.6e-58
TAIR|locus:2118721	180	AT4G30620 "AT4G30620" [Arabido	0.796	0.85	0.778	1.1e-57
UNIPROTKB|Q9KT50	109	VC_1055 "Nucleoid-associated p	0.526	0.926	0.323	1.2e-08
TIGR_CMR|VC_1055	109	VC_1055 "conserved hypothetica	0.526	0.926	0.323	1.2e-08
UNIPROTKB|P0A8B5	109	ybaB [Escherichia coli K-12 (t	0.520	0.917	0.317	6.8e-08
UNIPROTKB|Q609A8	107	MCA1327 "Nucleoid-associated p	0.520	0.934	0.269	2.3e-07
UNIPROTKB|Q47XR0	108	CPS_3743 "Nucleoid-associated	0.526	0.935	0.285	7.8e-07
TIGR_CMR|CPS_3743	108	CPS_3743 "conserved hypothetic	0.526	0.935	0.285	7.8e-07
UNIPROTKB|Q8EFF9	109	SO_2014 "Nucleoid-associated p	0.526	0.926	0.314	1e-06
TIGR_CMR|SO_2014	109	SO_2014 "conserved hypothetica	0.526	0.926	0.314	1e-06

TAIR|locus:2061471 AT2G24020 "AT2G24020" [Arabidopsis thaliana (taxid:3702)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 122/152 (80%), Positives = 134/152 (88%)

Query:    42 SFSSQQKSGHQFRSLRVYGLFGG-KKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQ 100
             ++  Q KS + +RSLRV GLFGG  KDNN   +D  SKAGI GNMQN+YETVKKAQMVVQ
Sbjct:    33 TWPKQYKSKNGYRSLRVNGLFGGGNKDNNS--EDGQSKAGIFGNMQNMYETVKKAQMVVQ 90

Query:   101 VEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYK 160
             VEAVRVQKELAAAEFDGYC GEL+KVTLSGNQQP+RT+ITEAAMELG+EKLS LVTEAYK
Sbjct:    91 VEAVRVQKELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYK 150

Query:   161 DAHQKSVLAMKERMSDLAQSLGMPQGLSEGLK 192
             DAH KSV+AMKERMSDLAQSLGMP GLSEG+K
Sbjct:   151 DAHAKSVVAMKERMSDLAQSLGMPPGLSEGMK 182

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

TAIR|locus:2118721 AT4G30620 "AT4G30620" [Arabidopsis thaliana (taxid:3702)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 123/158 (77%), Positives = 140/158 (88%)

Query:    36 AGKEMLSFSSQQKSGHQFRSLRVYGLFGG-KKDNNEKGDDAPSKAGILGNMQNLYETVKK 94
             + ++ + + ++++SG+  RSLRV GLFGG KKDN E G    SKAGILGNMQNLYETVKK
Sbjct:    27 SSRQNIVWLNRKQSGNNNRSLRVNGLFGGGKKDNKEDGQ---SKAGILGNMQNLYETVKK 83

Query:    95 AQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLL 154
             AQMVVQVEAVRVQKELA AEFDGYC+GEL+KVTLSGNQQP+RT+IT+AAMELG+EKLSLL
Sbjct:    84 AQMVVQVEAVRVQKELAVAEFDGYCQGELVKVTLSGNQQPIRTDITDAAMELGSEKLSLL 143

Query:   155 VTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGLSEGLK 192
             VTEAYKDAH KSVLAMKERMSDLAQSLGMP GL +GLK
Sbjct:   144 VTEAYKDAHSKSVLAMKERMSDLAQSLGMPPGL-DGLK 180

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

UNIPROTKB|Q9KT50 VC_1055 "Nucleoid-associated protein VC_1055" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 34/105 (32%), Positives = 56/105 (53%)

Query:    83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
             G M NL   +K+AQ + Q    ++Q+E+A  E  G     L+KVT++G+    R  I E+
Sbjct:     5 GGMGNL---MKQAQQM-QERMQKLQEEIANMEVTGESGAGLVKVTVTGSHSVRRVNIDES 60

Query:   143 AMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGL 187
              ME   E L  L+  A+ DA ++     KE+M+ +   + +P G+
Sbjct:    61 LMEDDKEMLEDLIAAAFNDAARRIEETQKEKMASITGGMQLPPGM 105

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_1055 VC_1055 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 34/105 (32%), Positives = 56/105 (53%)

Query:    83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
             G M NL   +K+AQ + Q    ++Q+E+A  E  G     L+KVT++G+    R  I E+
Sbjct:     5 GGMGNL---MKQAQQM-QERMQKLQEEIANMEVTGESGAGLVKVTVTGSHSVRRVNIDES 60

Query:   143 AMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGL 187
              ME   E L  L+  A+ DA ++     KE+M+ +   + +P G+
Sbjct:    61 LMEDDKEMLEDLIAAAFNDAARRIEETQKEKMASITGGMQLPPGM 105

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|P0A8B5 ybaB [Escherichia coli K-12 (taxid:83333)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 33/104 (31%), Positives = 56/104 (53%)

Query:    83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
             G + NL   +K+AQ + Q +  ++Q+E+A  E  G     L+KVT++G     R EI  +
Sbjct:     5 GGLGNL---MKQAQQM-QEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPS 60

Query:   143 AMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQG 186
              +E   E L  LV  A+ DA ++     KE+M+ ++  + +P G
Sbjct:    61 LLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPG 104

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0009295 "nucleoid" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006950 "response to stress" evidence=IEP

UNIPROTKB|Q609A8 MCA1327 "Nucleoid-associated protein MCA1327" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 28/104 (26%), Positives = 54/104 (51%)

Query:    85 MQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAM 144
             + NL +  ++ Q   Q    + Q+E+AA E      G L+K+ ++G ++ ++ EI  +  
Sbjct:     5 LANLMQQAQRFQETFQ----KTQEEIAATEIQAESGGGLVKIRMNGKREVLKVEIDPSLR 60

Query:   145 ELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGLS 188
             +   E L  L+  A+ D  ++     +E+M+ L  SLG+P G +
Sbjct:    61 QEEHEVLEDLIAAAFNDGVRRVAKLKQEKMAGLTGSLGIPPGFN 104

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q47XR0 CPS_3743 "Nucleoid-associated protein CPS_3743" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 30/105 (28%), Positives = 55/105 (52%)

Query:    83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
             G M NL   +K+AQ + Q +  + Q+ELA  E  G     ++KVT++G+    + E+ ++
Sbjct:     4 GGMGNL---MKQAQQM-QAKMAKAQEELAQMEVVGEAGAGMVKVTMTGSHSVRKVELDDS 59

Query:   143 AMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGL 187
              ME   + +  L+  A  DA ++     K++M  L   + +P G+
Sbjct:    60 LMEDDKDMIEDLLAAAVNDAVRRVEEQNKDKMGALTGGMQLPPGM 104

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_3743 CPS_3743 "conserved hypothetical protein TIGR00103" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 30/105 (28%), Positives = 55/105 (52%)

Query:    83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
             G M NL   +K+AQ + Q +  + Q+ELA  E  G     ++KVT++G+    + E+ ++
Sbjct:     4 GGMGNL---MKQAQQM-QAKMAKAQEELAQMEVVGEAGAGMVKVTMTGSHSVRKVELDDS 59

Query:   143 AMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGL 187
              ME   + +  L+  A  DA ++     K++M  L   + +P G+
Sbjct:    60 LMEDDKDMIEDLLAAAVNDAVRRVEEQNKDKMGALTGGMQLPPGM 104

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8EFF9 SO_2014 "Nucleoid-associated protein SO_2014" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 33/105 (31%), Positives = 54/105 (51%)

Query:    83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
             G M NL   +K+AQM+ Q    ++Q+E+A  E  G     L+KVT++G     + EI  +
Sbjct:     5 GGMGNL---MKQAQMM-QERMAKMQEEIARMEMVGESGAGLVKVTMTGAHTVRKVEIYPS 60

Query:   143 AMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGL 187
              ME   E L  L+  A  DA +      K +M+++   + +P G+
Sbjct:    61 LMEDDKEMLEDLIAAACNDAARIIEENQKAKMAEVTGGMQLPPGM 105

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_2014 SO_2014 "conserved hypothetical protein TIGR00103" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 33/105 (31%), Positives = 54/105 (51%)

Query:    83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
             G M NL   +K+AQM+ Q    ++Q+E+A  E  G     L+KVT++G     + EI  +
Sbjct:     5 GGMGNL---MKQAQMM-QERMAKMQEEIARMEMVGESGAGLVKVTMTGAHTVRKVEIYPS 60

Query:   143 AMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGL 187
              ME   E L  L+  A  DA +      K +M+++   + +P G+
Sbjct:    61 LMEDDKEMLEDLIAAACNDAARIIEENQKAKMAEVTGGMQLPPGM 105

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XVIII0915 hypothetical protein (196 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	192
pfam02575	92	pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding fami	8e-20
PRK00153	104	PRK00153, PRK00153, hypothetical protein; Validate	6e-19
COG0718	105	COG0718, COG0718, Uncharacterized protein conserve	3e-12
TIGR00103	101	TIGR00103, DNA_YbaB_EbfC, DNA-binding protein, Yba	2e-09
PRK14625	109	PRK14625, PRK14625, hypothetical protein; Provisio	3e-04

>gnl|CDD|217115 pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding family

 Score = 79.1 bits (196), Expect = 8e-20
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 93  KKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLS 152
           K+AQ + Q +  + Q+ELA  E +G   G L+KVT++G  +    EI    ++   E L 
Sbjct: 2   KQAQQM-QEKMEKAQEELANKEVEGTSGGGLVKVTVNGKGEVKDVEIDPELLDEDKEMLE 60

Query: 153 LLVTEAYKDAHQKSVLAMKERMSDLAQSLGMP 184
            L+  A  DA +K+    KE M  L   L +P
Sbjct: 61  DLIVAAINDALKKAEELAKEEMGKLTGGLNLP 92

This is a family of DNA-binding proteins. Members of this family form homodimers which bind DNA via a tweezer-like structure. The conformation of the DNA is changed when bound to these proteins. In bacteria, these proteins may play a role in DNA replication-recovery following DNA damage. Length = 92

>gnl|CDD|234669 PRK00153, PRK00153, hypothetical protein; Validated

 Score = 77.5 bits (192), Expect = 6e-19
 Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 5/103 (4%)

Query: 83  GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
           GNMQNL   +K+AQ + Q +  ++Q+ELA  E +G   G L+KVT++G ++  R +I  +
Sbjct: 3   GNMQNL---MKQAQQM-QEKMQKMQEELAQMEVEGEAGGGLVKVTMTGKKEVKRVKIDPS 58

Query: 143 AM-ELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMP 184
            +     E L  L+  A+ DA +K+   MKE+M  L   L  P
Sbjct: 59  LVDPEDVEMLEDLILAAFNDALRKAEETMKEKMGKLTGGLLPP 101

Length = 104

>gnl|CDD|223790 COG0718, COG0718, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 60.0 bits (146), Expect = 3e-12
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 4/107 (3%)

Query: 82  LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
           +G M ++ + +K+AQ + Q +  ++Q+ELA  E  G   G L+ VT++G  +    EI  
Sbjct: 1   MGGMMDMQKLMKQAQQM-QKKMQKMQEELAQKEVTGKAGGGLVTVTINGKGEVKSVEIDP 59

Query: 142 AAME-LGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGL 187
           + ++    E L  L+  A+ DA +K     KE+M  L    GMP G 
Sbjct: 60  SLLDPEDKEMLEDLILAAFNDAKKKVEETRKEKMGALTG--GMPPGF 104

Length = 105

>gnl|CDD|211546 TIGR00103, DNA_YbaB_EbfC, DNA-binding protein, YbaB/EbfC family

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 4/102 (3%)

Query: 86  QNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME 145
           +NL E +K+AQ + Q +  ++Q+E+A  E  G     L+KVT++GN +    EI  + +E
Sbjct: 4   KNLGELMKQAQQM-QEKMKKLQEEIAQFEVTGKSGAGLVKVTINGNLELKSIEIDPSLLE 62

Query: 146 LGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGL 187
              E L  ++TEA  DA +K     KE M+     + +P GL
Sbjct: 63  EDKEALEDMITEALNDAVKKVEETYKELMT---SGMPLPPGL 101

The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium [Unknown function, General]. Length = 101

>gnl|CDD|184772 PRK14625, PRK14625, hypothetical protein; Provisional

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 3/105 (2%)

Query: 85  MQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAM 144
           M++L   +K+AQ  +Q +    Q  LA    +G   G ++ VTL GN + VR  + E+ +
Sbjct: 1   MKDLGGLMKQAQ-AMQQKLADAQARLAETTVEGTSGGGMVTVTLMGNGELVRVLMDESLV 59

Query: 145 ELG-AEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSL-GMPQGL 187
           + G  E ++ L+  A+ DA +K      + M + A  + G+  GL
Sbjct: 60  QPGEGEVIADLIVAAHADAKKKLDAKQAQLMQEAAGPMAGLMGGL 104

Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	192
PRK14624	115	hypothetical protein; Provisional	100.0
PRK14625	109	hypothetical protein; Provisional	100.0
PRK14622	103	hypothetical protein; Provisional	100.0
PRK14621	111	hypothetical protein; Provisional	99.98
PRK14626	110	hypothetical protein; Provisional	99.98
PRK00153	104	hypothetical protein; Validated	99.97
PRK14628	118	hypothetical protein; Provisional	99.97
PRK14623	106	hypothetical protein; Provisional	99.97
COG0718	105	Uncharacterized protein conserved in bacteria [Fun	99.97
PRK14627	100	hypothetical protein; Provisional	99.97
TIGR00103	102	DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC famil	99.97
PRK03762	103	hypothetical protein; Provisional	99.96
PRK00587	99	hypothetical protein; Provisional	99.96
PRK14629	99	hypothetical protein; Provisional	99.95
PF02575	93	YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPr	99.94
PF10921	109	DUF2710: Protein of unknown function (DUF2710); In	96.73
PRK14624	115	hypothetical protein; Provisional	96.28
PRK03762	103	hypothetical protein; Provisional	96.26
PRK14626	110	hypothetical protein; Provisional	95.91
TIGR00103	102	DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC famil	95.49
COG0718	105	Uncharacterized protein conserved in bacteria [Fun	95.21
PRK00153	104	hypothetical protein; Validated	94.47
PRK14628	118	hypothetical protein; Provisional	94.23
PRK14627	100	hypothetical protein; Provisional	93.9
PF10904	101	DUF2694: Protein of unknown function (DUF2694); In	93.45
PRK14625	109	hypothetical protein; Provisional	93.43
PRK14623	106	hypothetical protein; Provisional	93.14
PRK14621	111	hypothetical protein; Provisional	93.09
PF02575	93	YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPr	91.21
PRK14622	103	hypothetical protein; Provisional	91.13
PRK00587	99	hypothetical protein; Provisional	86.37
PF10437	86	Lip_prot_lig_C: Bacterial lipoate protein ligase C	82.97
PF13103	85	TonB_2: TonB C terminal; PDB: 1LR0_A.	80.97

>PRK14624 hypothetical protein; Provisional

Probab=100.00  E-value=8e-34  Score=221.84  Aligned_cols=106  Identities=20%  Similarity=0.264  Sum_probs=102.2

Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccC-CHHHHHHHHHHHH
Q 029494           81 ILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMEL-GAEKLSLLVTEAY  159 (192)
Q Consensus        81 m~gnm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~-D~E~LedLI~aAv  159 (192)
                      ||.+|++|.+++||||+ ||++++++|++|++++|+|+|+||+|+||+||+++|++|+|||+++++ |+|+|||||++|+
T Consensus         1 ~~~~~~nm~~~mkqAq~-mQ~km~~~QeeL~~~~v~g~sGgG~VkV~~nG~~~i~~i~Idp~lld~eD~E~LeDLI~aAv   79 (115)
T PRK14624          1 MFDKIKNMSEALSNMGN-IREKMEEVKKRIASIRVVGDAGAGMVTVTATGEGQITNVFINKQLFDADDNKMLEDLVMAAT   79 (115)
T ss_pred             CcchHHhHHHHHHHHHH-HHHHHHHHHHHHhccEEEEEECCcEEEEEEEcCccEEEEEECHHHcCcccHHHHHHHHHHHH
Confidence            67788888899999999 899999999999999999999999999999999999999999999986 9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 029494          160 KDAHQKSVLAMKERMSDLAQSLGMPQGLS  188 (192)
Q Consensus       160 NdA~~Ka~e~~~e~m~~ltGGl~lP~Gl~  188 (192)
                      |+|++++++..+++|++++|||+|| ||+
T Consensus        80 NdA~~k~~e~~~e~m~~~tgGm~lP-Gl~  107 (115)
T PRK14624         80 NDALKKAKEATAYEFQNASGGLDFS-EIS  107 (115)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCC-chH
Confidence            9999999999999999999999999 864

>PRK14625 hypothetical protein; Provisional

Probab=100.00  E-value=2.3e-32  Score=211.91  Aligned_cols=101  Identities=29%  Similarity=0.377  Sum_probs=95.2

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccC-CHHHHHHHHHHHHHH
Q 029494           83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMEL-GAEKLSLLVTEAYKD  161 (192)
Q Consensus        83 gnm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~-D~E~LedLI~aAvNd  161 (192)
                      +||++|+   +|||+ ||++++++|++|++++|+|+|+||+|+||+||+++|++|+|||+++++ |+|+|||||++|+|+
T Consensus         2 ~nm~~mm---kqaq~-mQ~km~~~Q~el~~~~v~g~sggG~VkV~~~G~~~v~~I~Idp~ll~~eD~e~LeDLI~aA~Nd   77 (109)
T PRK14625          2 KDLGGLM---KQAQA-MQQKLADAQARLAETTVEGTSGGGMVTVTLMGNGELVRVLMDESLVQPGEGEVIADLIVAAHAD   77 (109)
T ss_pred             ccHHHHH---HHHHH-HHHHHHHHHHHHhccEEEEEECCCeEEEEEecCceEEEEEECHHHcCCccHHHHHHHHHHHHHH
Confidence            4666665   88888 799999999999999999999999999999999999999999999996 999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCC--CCCCCC
Q 029494          162 AHQKSVLAMKERMSDLAQSLG--MPQGLS  188 (192)
Q Consensus       162 A~~Ka~e~~~e~m~~ltGGl~--lP~Gl~  188 (192)
                      |++++++..+++|++++|||+  || ||.
T Consensus        78 A~~k~~~~~~~~m~~~tgg~~~~lP-G~~  105 (109)
T PRK14625         78 AKKKLDAKQAQLMQEAAGPMAGLMG-GLP  105 (109)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCC-CCC
Confidence            999999999999999999998  88 885

>PRK14622 hypothetical protein; Provisional

Probab=100.00  E-value=2.6e-32  Score=209.41  Aligned_cols=100  Identities=25%  Similarity=0.376  Sum_probs=95.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccC-CHHHHHHHHHHHHHHH
Q 029494           84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMEL-GAEKLSLLVTEAYKDA  162 (192)
Q Consensus        84 nm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~-D~E~LedLI~aAvNdA  162 (192)
                      ||++|+   +|||+ ||++|+++|++|++++|+|+|+||+|+||+||+++|++|+|||+++++ |+|+|||||++|||+|
T Consensus         2 ~~~~lm---kqaq~-mQ~~m~~~q~el~~~~v~g~sggG~VkV~~nG~~~v~~i~Idp~~l~~ed~e~LeDLI~aA~N~A   77 (103)
T PRK14622          2 DIQYLM---RQAKK-LEKAMADAKEKLAEIAVEAESGGGLVKVAMNGKCEVTRLTVDPKAVDPNDKAMLEDLVTAAVNAA   77 (103)
T ss_pred             CHHHHH---HHHHH-HHHHHHHHHHHHhccEEEEEECCceEEEEEEcCceEEEEEECHHHcCcccHHHHHHHHHHHHHHH
Confidence            566666   78888 799999999999999999999999999999999999999999999986 9999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCC
Q 029494          163 HQKSVLAMKERMSDLAQSLGMPQGLS  188 (192)
Q Consensus       163 ~~Ka~e~~~e~m~~ltGGl~lP~Gl~  188 (192)
                      ++++++..+++|++++|||+|| ||.
T Consensus        78 ~~k~~~~~~~~m~~~tgg~~lP-G~~  102 (103)
T PRK14622         78 VEKARTAADESMSKATGGIKIP-GIA  102 (103)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCC-CCC
Confidence            9999999999999999999999 885

>PRK14621 hypothetical protein; Provisional

Probab=99.98  E-value=7.3e-32  Score=209.57  Aligned_cols=100  Identities=24%  Similarity=0.321  Sum_probs=93.8

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHH
Q 029494           83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDA  162 (192)
Q Consensus        83 gnm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA  162 (192)
                      +||++|+   +|||+ ||++|+++|++|++++|+|+|+||+|+||+||+++|++|+|||++++ |+|+|||||++|||+|
T Consensus         4 ~nm~~mm---kqaq~-mQ~km~~~Q~eL~~~~v~g~sGgG~VkV~~~G~~~i~~i~Idp~lld-D~e~LeDLI~aA~NdA   78 (111)
T PRK14621          4 PNLGDMM---KQIQQ-AGEKMQDVQKQLEKLVAHGEAGGGMVKASVNGKQKLLSLAIDPEIMD-DVEMVQDLVVAAVNSA   78 (111)
T ss_pred             hhHHHHH---HHHHH-HHHHHHHHHHHHHccEEEEEECCceEEEEEEcCceEEEEEECHHHcC-CHHHHHHHHHHHHHHH
Confidence            4566665   88888 79999999999999999999999999999999999999999999997 9999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCC
Q 029494          163 HQKSVLAMKERMSDLAQSLGMPQGL  187 (192)
Q Consensus       163 ~~Ka~e~~~e~m~~ltGGl~lP~Gl  187 (192)
                      ++++++..+++|++++|||++|+.|
T Consensus        79 ~~ka~~~~~e~m~~~tgGm~~p~~~  103 (111)
T PRK14621         79 LEESAKLAQEEISKVAGGMMNPADI  103 (111)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCHHH
Confidence            9999999999999999999999534

>PRK14626 hypothetical protein; Provisional

Probab=99.98  E-value=1.7e-31  Score=207.14  Aligned_cols=104  Identities=24%  Similarity=0.290  Sum_probs=94.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccC-CHHHHHHHHHHHHHHH
Q 029494           84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMEL-GAEKLSLLVTEAYKDA  162 (192)
Q Consensus        84 nm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~-D~E~LedLI~aAvNdA  162 (192)
                      +|.+|.++++|||+ ||++++++|++|++++|+|+|+||+|+||+||+++|++|+|||+++++ |+|+|||||++|+|+|
T Consensus         3 ~~gn~~~mmkqaq~-mQ~km~~~qeeL~~~~v~g~sggG~VkV~~nG~~ev~~i~Id~~ll~~ed~e~LeDLI~aA~N~A   81 (110)
T PRK14626          3 NFGNLAELMKQMQS-IKENVEKAKEELKKEEIVVEVGGGMVKVVSNGLGEIKDVEIDKSLLNEDEYEVLKDLLIAAFNEA   81 (110)
T ss_pred             CcHhHHHHHHHHHH-HHHHHHHHHHHHhccEEEEEecCcEEEEEEECCccEEEEEECHHHcCcccHHHHHHHHHHHHHHH
Confidence            34445555688888 799999999999999999999999999999999999999999999986 9999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcC-CCCCCCCCC
Q 029494          163 HQKSVLAMKERMSDLAQS-LGMPQGLSE  189 (192)
Q Consensus       163 ~~Ka~e~~~e~m~~ltGG-l~lP~Gl~~  189 (192)
                      ++++++..+++|++++|+ +++| |+++
T Consensus        82 ~~k~~~~~~e~m~~~tg~p~~~p-~~~~  108 (110)
T PRK14626         82 SRRSKEVMGEKMTQAAGLPSNIS-KFGG  108 (110)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCC-CCCC
Confidence            999999999999999987 6777 8754

>PRK00153 hypothetical protein; Validated

Probab=99.97  E-value=2.6e-31  Score=202.78  Aligned_cols=102  Identities=38%  Similarity=0.542  Sum_probs=95.7

Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccC-CHHHHHHHHHHHH
Q 029494           81 ILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMEL-GAEKLSLLVTEAY  159 (192)
Q Consensus        81 m~gnm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~-D~E~LedLI~aAv  159 (192)
                      ||+||++|+   ++||+ ||++++++|++|++++|+|+|+||+|+||+||+|+|++|+|||+++++ |+|.|+|+|++|+
T Consensus         1 ~~~~~~~m~---~qaq~-~q~~~~~~q~~l~~~~~~~~s~~G~V~V~v~G~~~v~~i~Id~~ll~~~d~e~LedlI~~A~   76 (104)
T PRK00153          1 GMGNMQNLM---KQAQQ-MQEKMQKMQEELAQMEVEGEAGGGLVKVTMTGKKEVKRVKIDPSLVDPEDVEMLEDLILAAF   76 (104)
T ss_pred             CcccHHHHH---HHHHH-HHHHHHHHHHHHhccEEEEEECCCeEEEEEecCceEEEEEECHHHcCCcCHHHHHHHHHHHH
Confidence            356777776   77777 799999999999999999999999999999999999999999999975 9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 029494          160 KDAHQKSVLAMKERMSDLAQSLGMPQGL  187 (192)
Q Consensus       160 NdA~~Ka~e~~~e~m~~ltGGl~lP~Gl  187 (192)
                      |+|++++++.++++|.+++|||++| ||
T Consensus        77 n~A~~~~~~~~~e~m~~~~gg~~~p-gl  103 (104)
T PRK00153         77 NDALRKAEETMKEKMGKLTGGLLPP-GF  103 (104)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCC-CC
Confidence            9999999999999999999999887 87

>PRK14628 hypothetical protein; Provisional

Probab=99.97  E-value=3.4e-31  Score=207.84  Aligned_cols=102  Identities=22%  Similarity=0.329  Sum_probs=95.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHH
Q 029494           84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAH  163 (192)
Q Consensus        84 nm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~  163 (192)
                      +|++|+++++++|+.||++++++|++|++++|+|+|+||+|+||+||+++|++|+|||++++ |+|+|||||++|||+|+
T Consensus        16 ~~~~lm~q~~k~qq~mq~k~~elqe~l~~~~v~g~sggG~VkV~~nG~~ei~~I~Idp~~l~-D~E~LeDLIiaA~NdA~   94 (118)
T PRK14628         16 KQEKLLKDFAKMQEELQKKIQELEESFSQIEVEASVGGGAVRIVATCDRRVKDIEIDEDLKE-DFETLKDLLIAGMNEVM   94 (118)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHceEEEEEecCceEEEEEEcCceEEEEEECHHHcC-CHHHHHHHHHHHHHHHH
Confidence            46676776666666689999999999999999999999999999999999999999999996 99999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCC
Q 029494          164 QKSVLAMKERMSDLAQSLGMPQGL  187 (192)
Q Consensus       164 ~Ka~e~~~e~m~~ltGGl~lP~Gl  187 (192)
                      +++++..+++|+++++||+|| |+
T Consensus        95 ~ka~~~~~~~m~~~tggm~lP-Gl  117 (118)
T PRK14628         95 EKIEKRREEEMSKITQQFGIP-GL  117 (118)
T ss_pred             HHHHHHHHHHHHHHhCCCCCC-CC
Confidence            999999999999999999999 64

>PRK14623 hypothetical protein; Provisional

Probab=99.97  E-value=4e-31  Score=204.05  Aligned_cols=101  Identities=20%  Similarity=0.292  Sum_probs=93.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHH
Q 029494           84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAH  163 (192)
Q Consensus        84 nm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~  163 (192)
                      ||++|+   ++||+ ||++++++|++|++++|+|+|+||+|+||+||+++|++|+|||++++ |+|+|||||++|+|+|+
T Consensus         2 ~~~~~m---kqaqk-mQ~km~~~Qeel~~~~v~g~sggG~VkVt~~G~~~i~~i~Idp~~l~-D~E~LeDLI~aAvn~A~   76 (106)
T PRK14623          2 DMMGMM---GKLKE-AQQKVEATKKRLDTVLIDEQSSDGLLKVTVTANREIKSISIDDELLE-DKEQLEDYLVLTLNKAI   76 (106)
T ss_pred             CHHHHH---HHHHH-HHHHHHHHHHHHhccEEEEEECCceEEEEEEcCccEEEEEECHHHcC-CHHHHHHHHHHHHHHHH
Confidence            566666   77777 79999999999999999999999999999999999999999999996 99999999999999999


Q ss_pred             HHHHHHHHHHHHhhh-cCCC-CCCCCCCC
Q 029494          164 QKSVLAMKERMSDLA-QSLG-MPQGLSEG  190 (192)
Q Consensus       164 ~Ka~e~~~e~m~~lt-GGl~-lP~Gl~~g  190 (192)
                      +++++..+++|++++ +||+ +| ||+.=
T Consensus        77 ~k~~~~~~~~m~~~t~~g~~~~P-G~~~~  104 (106)
T PRK14623         77 EKATEINEAELGAVAKEGMPDIP-GMDNM  104 (106)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCC-Cchhh
Confidence            999999999999999 6997 66 98753

>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.97  E-value=4.1e-31  Score=203.74  Aligned_cols=100  Identities=33%  Similarity=0.470  Sum_probs=93.7

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccC-CHHHHHHHHHHHHHH
Q 029494           83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMEL-GAEKLSLLVTEAYKD  161 (192)
Q Consensus        83 gnm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~-D~E~LedLI~aAvNd  161 (192)
                      +||+.|+   ++||+ ||++++++|+||++++|+|++++|+|+||++|+++|++|+|||+++++ |+|+|||||++|+||
T Consensus         5 ~~~~~l~---kqaqq-mQ~~~~~~Q~ela~~ev~g~aggGlVtV~~~G~~ev~~v~Idp~l~dpeD~E~LeDLi~aA~nd   80 (105)
T COG0718           5 MDMQKLM---KQAQQ-MQKKMQKMQEELAQKEVTGKAGGGLVTVTINGKGEVKSVEIDPSLLDPEDKEMLEDLILAAFND   80 (105)
T ss_pred             hhHHHHH---HHHHH-HHHHHHHHHHHHHhcEEeeecCCcEEEEEEeCCCcEEEEEeCHHHcCcccHHHHHHHHHHHHHH
Confidence            3666666   77777 699999999999999999999999999999999999999999999997 999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 029494          162 AHQKSVLAMKERMSDLAQSLGMPQGLS  188 (192)
Q Consensus       162 A~~Ka~e~~~e~m~~ltGGl~lP~Gl~  188 (192)
                      |.+++++..+++|+.+++||+ | ||+
T Consensus        81 A~~kv~e~~~e~m~~~t~gm~-P-G~~  105 (105)
T COG0718          81 AKKKVEETRKEKMGALTGGMP-P-GFK  105 (105)
T ss_pred             HHHHHHHHHHHHHHHhhccCC-C-CCC
Confidence            999999999999999999998 7 874

>PRK14627 hypothetical protein; Provisional

Probab=99.97  E-value=5.8e-30  Score=195.48  Aligned_cols=95  Identities=31%  Similarity=0.379  Sum_probs=90.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccC-CHHHHHHHHHHHHHHH
Q 029494           84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMEL-GAEKLSLLVTEAYKDA  162 (192)
Q Consensus        84 nm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~-D~E~LedLI~aAvNdA  162 (192)
                      ||++|+   ++||+ ||++++++|++|++++|+|+|+||+|+||+||+++|++|+|||+++++ |+|+|||||++|||+|
T Consensus         2 n~~~~m---kqaq~-mQ~km~~~Q~el~~~~veg~sggG~VkV~~~G~~~v~~i~Idp~ll~~ed~e~LeDLI~aA~N~A   77 (100)
T PRK14627          2 NQRQLM---QMAQQ-MQRQMQKVQEELAATIVEGTAGGGAITVKMNGHREVQSITISPEVVDPDDVEMLQDLLLVAINDA   77 (100)
T ss_pred             CHHHHH---HHHHH-HHHHHHHHHHHHhccEEEEEEcCCeEEEEEEcCccEEEEEECHHHcCcccHHHHHHHHHHHHHHH
Confidence            777776   77777 799999999999999999999999999999999999999999999987 9999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCC
Q 029494          163 HQKSVLAMKERMSDLAQSLG  182 (192)
Q Consensus       163 ~~Ka~e~~~e~m~~ltGGl~  182 (192)
                      ++++++..+++|++++|||+
T Consensus        78 ~~k~~~~~~~~m~~~tgg~~   97 (100)
T PRK14627         78 SRKAQQLAEERMQPLTGGLK   97 (100)
T ss_pred             HHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999863

>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family

Probab=99.97  E-value=5.3e-30  Score=195.87  Aligned_cols=98  Identities=34%  Similarity=0.455  Sum_probs=90.5

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHH
Q 029494           83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDA  162 (192)
Q Consensus        83 gnm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA  162 (192)
                      +||++|+   ++||+ ||++++++|+||++++|+|+|+||+|+||++|+++|++|+|||+++++|+|.|||+|++|+|+|
T Consensus         5 ~n~~~m~---kqaq~-mQ~k~~~~q~eL~~~~v~g~sggGlV~V~~~G~~~v~~v~Id~~~l~~d~e~LedlI~~A~N~A   80 (102)
T TIGR00103         5 GNLGELM---KQAQQ-MQEKMKKLQEEIAQFEVTGKSGAGLVTVTINGNLELKSIEIDPSLLEEDKEALEDMITEALNDA   80 (102)
T ss_pred             hhHHHHH---HHHHH-HHHHHHHHHHHHhccEEEEEECCCEEEEEEEcCceEEEEEECHHHHhCCHHHHHHHHHHHHHHH
Confidence            3555554   78888 7999999999999999999999999999999999999999999999889999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCC
Q 029494          163 HQKSVLAMKERMSDLAQSLGMPQGL  187 (192)
Q Consensus       163 ~~Ka~e~~~e~m~~ltGGl~lP~Gl  187 (192)
                      ++++++.+++   .+++||++||||
T Consensus        81 ~~k~~~~~~e---~~t~gl~~~pGl  102 (102)
T TIGR00103        81 VKKVEETYKE---LMTSGMPLPPGL  102 (102)
T ss_pred             HHHHHHHHHH---HHhCCCCCCCCC
Confidence            9999999999   888999996576

The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.

>PRK03762 hypothetical protein; Provisional

Probab=99.96  E-value=2.7e-29  Score=192.95  Aligned_cols=94  Identities=21%  Similarity=0.318  Sum_probs=88.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHH
Q 029494           84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAH  163 (192)
Q Consensus        84 nm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~  163 (192)
                      ||++|+   +++|+ ||++++++|++|++++|+|+|+||+|+||+||+++|++|+|||++++ |+|+|||||++|||+|+
T Consensus         6 ~~~~m~---kqaqk-mQ~km~~~Q~el~~~~v~g~sggGlVkV~~nG~~~i~~i~Id~~ll~-D~e~LeDLI~aAiNdA~   80 (103)
T PRK03762          6 DFSKLG---EMLEQ-MQKKAKQLEEENANKEFTAKSGGGLVSVSANGKGEVIDISIDDSLLE-DKESLQILLISAINDVY   80 (103)
T ss_pred             CHHHHH---HHHHH-HHHHHHHHHHHHhccEEEEEEcCceEEEEEEcCceEEEEEECHHHcC-CHHHHHHHHHHHHHHHH
Confidence            677777   55666 69999999999999999999999999999999999999999999996 99999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCC
Q 029494          164 QKSVLAMKERMSDLAQSLG  182 (192)
Q Consensus       164 ~Ka~e~~~e~m~~ltGGl~  182 (192)
                      +++++..+++|++++|||+
T Consensus        81 ~k~~~~~~~~m~~~tggm~   99 (103)
T PRK03762         81 KMVEENKKNLALNMLGGFG   99 (103)
T ss_pred             HHHHHHHHHHHHHHhcccC
Confidence            9999999999999999883

>PRK00587 hypothetical protein; Provisional

Probab=99.96  E-value=2e-28  Score=187.08  Aligned_cols=96  Identities=24%  Similarity=0.272  Sum_probs=89.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccC-CHHHHHHHHHHHHHHH
Q 029494           84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMEL-GAEKLSLLVTEAYKDA  162 (192)
Q Consensus        84 nm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~-D~E~LedLI~aAvNdA  162 (192)
                      ||++|+   ++||+ ||++++++|++|++++|+|++ ||+|+||+||+++|++|+|||+++++ |+|+|||||++|+|+|
T Consensus         2 ~~~~lm---kqaqk-mQ~km~~~QeeL~~~~v~g~~-gGlVkV~~nG~~~i~~i~Idp~lld~eD~E~LeDLI~aA~NdA   76 (99)
T PRK00587          2 NFQKLA---QQLKK-MQNTMEKKQKEFEEKEFDFDY-KKYILIKIKGNLNIEKIEINKELIDPEDKETLQDMLREAINEA   76 (99)
T ss_pred             CHHHHH---HHHHH-HHHHHHHHHHHHhccEEEEEc-CCeEEEEEEcCccEEEEEECHHHcCCccHHHHHHHHHHHHHHH
Confidence            677776   77777 699999999999999999999 99999999999999999999999986 9999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCC
Q 029494          163 HQKSVLAMKERMSDLAQSLGMPQGL  187 (192)
Q Consensus       163 ~~Ka~e~~~e~m~~ltGGl~lP~Gl  187 (192)
                      ++++++..+++|.+++||+  | |+
T Consensus        77 ~~k~~e~~~e~m~~~~~~~--~-~~   98 (99)
T PRK00587         77 ISITCKERDAIMNSTIPKG--T-GL   98 (99)
T ss_pred             HHHHHHHHHHHHHHhcCCC--C-CC
Confidence            9999999999999999875  4 65

>PRK14629 hypothetical protein; Provisional

Probab=99.95  E-value=6.1e-27  Score=178.93  Aligned_cols=89  Identities=19%  Similarity=0.239  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccC-CHHHHHHHHHHHHHHHHHHHH
Q 029494           89 YETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMEL-GAEKLSLLVTEAYKDAHQKSV  167 (192)
Q Consensus        89 ~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~-D~E~LedLI~aAvNdA~~Ka~  167 (192)
                      +++|+|||+ ||++++++|++|++++|+|++|||+|+||+||+++|++|+|||+++++ |+|+|||||++|+|+|+++++
T Consensus         6 ~~~mkqaq~-mQ~km~~~Q~eL~~~~veg~aggGlVkV~~nG~~~v~~i~Idp~lld~eD~e~LeDLI~aAvNdA~~k~~   84 (99)
T PRK14629          6 LDFLKNMSS-FKDNIDNIKKEISQIVVCGRAGSDVVVVEMNGEFNVKKVSIKEEFFDDLDNEALEHMIKSAFNDAVSKVK   84 (99)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHhccEEEEEecCCEEEEEEEcCccEEEEEECHHHcCcccHHHHHHHHHHHHHHHHHHHH
Confidence            455688888 799999999999999999999999999999999999999999999997 999999999999999999999


Q ss_pred             HHHHHHHHhhhcCC
Q 029494          168 LAMKERMSDLAQSL  181 (192)
Q Consensus       168 e~~~e~m~~ltGGl  181 (192)
                      +.   .+++++|+|
T Consensus        85 e~---~~~~~~~~~   95 (99)
T PRK14629         85 EE---IKSKTMGSL   95 (99)
T ss_pred             HH---HHHhhccCC
Confidence            97   344555654

>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown

Probab=99.94  E-value=6.6e-26  Score=167.77  Aligned_cols=92  Identities=37%  Similarity=0.513  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCccccc-CCHHHHHHHHHHHHHHHHHHHHHHH
Q 029494           92 VKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME-LGAEKLSLLVTEAYKDAHQKSVLAM  170 (192)
Q Consensus        92 ~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~-~D~E~LedLI~aAvNdA~~Ka~e~~  170 (192)
                      |+++|+ ||++++++|++|++++|+++|+||+|+|||||+|+|++|+|||++++ .|++.|+++|++|+|+|.+++.+.+
T Consensus         1 m~~~~~-~~~~~~~~~~~l~~~~~~~~s~~g~V~V~v~g~g~v~~i~i~~~~~~~~~~~~L~~~I~~A~n~A~~~a~~~~   79 (93)
T PF02575_consen    1 MKQAQE-MQEKMEEAQEELAEIEVTGTSGDGLVTVTVNGNGEVVDIEIDPSALRPLDPEELEDLIVEAVNDAQKKAREKA   79 (93)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHSEEEEEETCCTEEEEEETTS-EEEEEE-GGGGCTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHH-HHHHHHHHHHHHhcCEEEEEECCCEEEEEEecCceEEEEEEehHhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478888 79999999999999999999999999999999999999999999999 4999999999999999999999999


Q ss_pred             HHHHHhhhcCCCCC
Q 029494          171 KERMSDLAQSLGMP  184 (192)
Q Consensus       171 ~e~m~~ltGGl~lP  184 (192)
                      ++.|.+++|||+||
T Consensus        80 ~~~~~~~~g~~~~P   93 (93)
T PF02575_consen   80 QEEMAELTGGLGLP   93 (93)
T ss_dssp             HHHHHHHHHTT-S-
T ss_pred             HHHHHHHhcCCCCC
Confidence            99999999999998

It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.

>PF10921 DUF2710: Protein of unknown function (DUF2710); InterPro: IPR024296 This family of uncharacterised proteins appears to be restricted to Mycobacteriaceae

Probab=96.73  E-value=0.028  Score=43.54  Aligned_cols=78  Identities=6%  Similarity=0.044  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccC-CHHHHHHHHHHHHHHHHHHHHHHHH
Q 029494           93 KKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMEL-GAEKLSLLVTEAYKDAHQKSVLAMK  171 (192)
Q Consensus        93 KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~-D~E~LedLI~aAvNdA~~Ka~e~~~  171 (192)
                      +.+.+ ...+.+++-+|.+.++++.  +.|-|..++|.+|+++++.+-|.++.. ..-.|.|.|--||..+...|+....
T Consensus        25 r~lse-aa~kweaLvaeae~itysv--dlGDv~avaNSdGrL~~LtLhpgv~t~YshgeLaerlN~ai~alr~eAeaen~  101 (109)
T PF10921_consen   25 RELSE-AADKWEALVAEAETITYSV--DLGDVRAVANSDGRLLELTLHPGVMTGYSHGELAERLNTAITALREEAEAENR  101 (109)
T ss_pred             HHHHH-HHHHHHHHHHHhhcceeec--cCCcEEEEecCCCcEEEEEeccchhcCcchHHHHHHHHHHHHHHHHHHhhhhh
Confidence            44444 3678888888888888776  677799999999999999999999987 8889999999999888877766544


Q ss_pred             HH
Q 029494          172 ER  173 (192)
Q Consensus       172 e~  173 (192)
                      ..
T Consensus       102 A~  103 (109)
T PF10921_consen  102 AR  103 (109)
T ss_pred             hh
Confidence            43

>PRK14624 hypothetical protein; Provisional

Probab=96.28  E-value=0.025  Score=44.65  Aligned_cols=96  Identities=10%  Similarity=0.156  Sum_probs=68.8

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHH
Q 029494           82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAA-------AEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLL  154 (192)
Q Consensus        82 ~gnm~~L~~~~KkaQe~mQ~km~klQeeL~~-------~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedL  154 (192)
                      +.||++|+++++++|+.|++--+++.+.--.       ++|+.+.....++|+++..-  ++ .=|++.|   .+.|-..
T Consensus         5 ~~nm~~~mkqAq~mQ~km~~~QeeL~~~~v~g~sGgG~VkV~~nG~~~i~~i~Idp~l--ld-~eD~E~L---eDLI~aA   78 (115)
T PRK14624          5 IKNMSEALSNMGNIREKMEEVKKRIASIRVVGDAGAGMVTVTATGEGQITNVFINKQL--FD-ADDNKML---EDLVMAA   78 (115)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCcEEEEEEEcCccEEEEEECHHH--cC-cccHHHH---HHHHHHH
Confidence            4689999999999988777666666554322       66777777888999998742  10 0134445   3477889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh-cCCCC
Q 029494          155 VTEAYKDAHQKSVLAMKERMSDLA-QSLGM  183 (192)
Q Consensus       155 I~aAvNdA~~Ka~e~~~e~m~~lt-GGl~l  183 (192)
                      |-+|+.++.+..++.+.+..+.+- .||.+
T Consensus        79 vNdA~~k~~e~~~e~m~~~tgGm~lPGl~~  108 (115)
T PRK14624         79 TNDALKKAKEATAYEFQNASGGLDFSEISK  108 (115)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCchHH
Confidence            999999999999999999887662 35544

>PRK03762 hypothetical protein; Provisional

Probab=96.26  E-value=0.045  Score=42.33  Aligned_cols=92  Identities=14%  Similarity=0.264  Sum_probs=65.2

Q ss_pred             cccHHHHHHHH-HHHHHHHHHHHHHHHHHHh----ccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHH
Q 029494           82 LGNMQNLYETV-KKAQMVVQVEAVRVQKELA----AAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVT  156 (192)
Q Consensus        82 ~gnm~~L~~~~-KkaQe~mQ~km~klQeeL~----~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~  156 (192)
                      |++|..+++.| +++++ +|+++++..-+-.    -++|+.......++|+++..--    + |++.++   +.|-..|-
T Consensus         7 ~~~m~kqaqkmQ~km~~-~Q~el~~~~v~g~sggGlVkV~~nG~~~i~~i~Id~~ll----~-D~e~Le---DLI~aAiN   77 (103)
T PRK03762          7 FSKLGEMLEQMQKKAKQ-LEEENANKEFTAKSGGGLVSVSANGKGEVIDISIDDSLL----E-DKESLQ---ILLISAIN   77 (103)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHhccEEEEEEcCceEEEEEEcCceEEEEEECHHHc----C-CHHHHH---HHHHHHHH
Confidence            56666666433 34444 4666654432222    3777778778889999988752    3 888884   47889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 029494          157 EAYKDAHQKSVLAMKERMSDLAQSLGM  183 (192)
Q Consensus       157 aAvNdA~~Ka~e~~~e~m~~ltGGl~l  183 (192)
                      +|+.++-+..++.+.+..+.+ +||++
T Consensus        78 dA~~k~~~~~~~~m~~~tggm-~~~~~  103 (103)
T PRK03762         78 DVYKMVEENKKNLALNMLGGF-GGFGL  103 (103)
T ss_pred             HHHHHHHHHHHHHHHHHhccc-CCCCC
Confidence            999999999999999998887 66764

>PRK14626 hypothetical protein; Provisional

Probab=95.91  E-value=0.077  Score=41.38  Aligned_cols=96  Identities=16%  Similarity=0.157  Sum_probs=69.9

Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHH-------hccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHH
Q 029494           81 ILGNMQNLYETVKKAQMVVQVEAVRVQKEL-------AAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSL  153 (192)
Q Consensus        81 m~gnm~~L~~~~KkaQe~mQ~km~klQeeL-------~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~Led  153 (192)
                      +|+||++|+++++++|+.|++--+++...-       ..++|+.+..+..++|+++..-  ++ .=|++.|   .+.|-.
T Consensus         3 ~~gn~~~mmkqaq~mQ~km~~~qeeL~~~~v~g~sggG~VkV~~nG~~ev~~i~Id~~l--l~-~ed~e~L---eDLI~a   76 (110)
T PRK14626          3 NFGNLAELMKQMQSIKENVEKAKEELKKEEIVVEVGGGMVKVVSNGLGEIKDVEIDKSL--LN-EDEYEVL---KDLLIA   76 (110)
T ss_pred             CcHhHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCcEEEEEEECCccEEEEEECHHH--cC-cccHHHH---HHHHHH
Confidence            357999999999999887666666665554       3377888888889999998762  21 0123445   347789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh--hhcCCC
Q 029494          154 LVTEAYKDAHQKSVLAMKERMSD--LAQSLG  182 (192)
Q Consensus       154 LI~aAvNdA~~Ka~e~~~e~m~~--ltGGl~  182 (192)
                      .|-+|+.++-+.+++.+.+.+.-  -.+||+
T Consensus        77 A~N~A~~k~~~~~~e~m~~~tg~p~~~p~~~  107 (110)
T PRK14626         77 AFNEASRRSKEVMGEKMTQAAGLPSNISKFG  107 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence            99999999999999999888764  234664

>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family

Probab=95.49  E-value=0.072  Score=40.76  Aligned_cols=37  Identities=16%  Similarity=0.083  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeC
Q 029494          100 QVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEIT  140 (192)
Q Consensus       100 Q~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Id  140 (192)
                      -++++++|++++++.-+=..    .+|+....+-++.|.++
T Consensus        11 ~kqaq~mQ~k~~~~q~eL~~----~~v~g~sggGlV~V~~~   47 (102)
T TIGR00103        11 MKQAQQMQEKMKKLQEEIAQ----FEVTGKSGAGLVTVTIN   47 (102)
T ss_pred             HHHHHHHHHHHHHHHHHHhc----cEEEEEECCCEEEEEEE
Confidence            34444555555544433322    33444444444444443

The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.

>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.21  E-value=0.21  Score=38.89  Aligned_cols=87  Identities=16%  Similarity=0.139  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeC--ccccc-C-CHHHHH----HHHHHHHHHHHHHHHHHHH
Q 029494          100 QVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEIT--EAAME-L-GAEKLS----LLVTEAYKDAHQKSVLAMK  171 (192)
Q Consensus       100 Q~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Id--p~~l~-~-D~E~Le----dLI~aAvNdA~~Ka~e~~~  171 (192)
                      -++++++|+++.++.-+-..    .+|+-+..+-++.|.|+  -++.+ . |++.|.    +.+-.=+-.|+..|.+.++
T Consensus        11 ~kqaqqmQ~~~~~~Q~ela~----~ev~g~aggGlVtV~~~G~~ev~~v~Idp~l~dpeD~E~LeDLi~aA~ndA~~kv~   86 (105)
T COG0718          11 MKQAQQMQKKMQKMQEELAQ----KEVTGKAGGGLVTVTINGKGEVKSVEIDPSLLDPEDKEMLEDLILAAFNDAKKKVE   86 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHh----cEEeeecCCcEEEEEEeCCCcEEEEEeCHHHcCcccHHHHHHHHHHHHHHHHHHHH
Confidence            35666666666665544332    45555666666666663  33333 2 666665    4566666677777777777


Q ss_pred             HHHHhhhcCCCCCCCCCCCCC
Q 029494          172 ERMSDLAQSLGMPQGLSEGLK  192 (192)
Q Consensus       172 e~m~~ltGGl~lP~Gl~~g~~  192 (192)
                      +...+..+.+  ++||.-|++
T Consensus        87 e~~~e~m~~~--t~gm~PG~~  105 (105)
T COG0718          87 ETRKEKMGAL--TGGMPPGFK  105 (105)
T ss_pred             HHHHHHHHHh--hccCCCCCC
Confidence            7777766643  446632443

>PRK00153 hypothetical protein; Validated

Probab=94.47  E-value=0.16  Score=38.63  Aligned_cols=84  Identities=13%  Similarity=0.122  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccc--c-C-CHHHH----HHHHHHHHHHHHHHHHHHH
Q 029494           99 VQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAM--E-L-GAEKL----SLLVTEAYKDAHQKSVLAM  170 (192)
Q Consensus        99 mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l--~-~-D~E~L----edLI~aAvNdA~~Ka~e~~  170 (192)
                      |-++++++|++++++.-+-..    ++|+....+-.+.|.|+-.--  + . |++.|    .+.|-+.|-.|+.+|.+.+
T Consensus         8 m~~qaq~~q~~~~~~q~~l~~----~~~~~~s~~G~V~V~v~G~~~v~~i~Id~~ll~~~d~e~LedlI~~A~n~A~~~~   83 (104)
T PRK00153          8 LMKQAQQMQEKMQKMQEELAQ----MEVEGEAGGGLVKVTMTGKKEVKRVKIDPSLVDPEDVEMLEDLILAAFNDALRKA   83 (104)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc----cEEEEEECCCeEEEEEecCceEEEEEECHHHcCCcCHHHHHHHHHHHHHHHHHHH
Confidence            466788888888877655443    566666666778888865542  2 2 77777    5678888888888888888


Q ss_pred             HHHHHhhhcCCCCCCCCC
Q 029494          171 KERMSDLAQSLGMPQGLS  188 (192)
Q Consensus       171 ~e~m~~ltGGl~lP~Gl~  188 (192)
                      ++.+.+....+  .+||+
T Consensus        84 ~~~~~e~m~~~--~gg~~   99 (104)
T PRK00153         84 EETMKEKMGKL--TGGLL   99 (104)
T ss_pred             HHHHHHHHHHH--hCCCC
Confidence            88888887654  34664

>PRK14628 hypothetical protein; Provisional

Probab=94.23  E-value=0.76  Score=36.35  Aligned_cols=57  Identities=9%  Similarity=0.170  Sum_probs=31.5

Q ss_pred             cEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029494          113 AEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDL  177 (192)
Q Consensus       113 ~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~~Ka~e~~~e~m~~l  177 (192)
                      ++|+.+..+..+.|+++..-  +  + |++.|+   +.|-..|-+|+.+|-+..++.+.+....+
T Consensus        56 VkV~~nG~~ei~~I~Idp~~--l--~-D~E~Le---DLIiaA~NdA~~ka~~~~~~~m~~~tggm  112 (118)
T PRK14628         56 VRIVATCDRRVKDIEIDEDL--K--E-DFETLK---DLLIAGMNEVMEKIEKRREEEMSKITQQF  112 (118)
T ss_pred             EEEEEEcCceEEEEEECHHH--c--C-CHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            45555555556666666543  2  2 555553   35555666666666666666666555443

>PRK14627 hypothetical protein; Provisional

Probab=93.90  E-value=0.28  Score=37.57  Aligned_cols=83  Identities=11%  Similarity=0.094  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeC--ccccc-C-CHHHH----HHHHHHHHHHHHHHHHHHHH
Q 029494          100 QVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEIT--EAAME-L-GAEKL----SLLVTEAYKDAHQKSVLAMK  171 (192)
Q Consensus       100 Q~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Id--p~~l~-~-D~E~L----edLI~aAvNdA~~Ka~e~~~  171 (192)
                      -++++++|++++++.-+-..    .+|+....+-.+.|.++  -.+++ . |++.|    .+.+-..+-.|+..|.+..+
T Consensus         7 mkqaq~mQ~km~~~Q~el~~----~~veg~sggG~VkV~~~G~~~v~~i~Idp~ll~~ed~e~LeDLI~aA~N~A~~k~~   82 (100)
T PRK14627          7 MQMAQQMQRQMQKVQEELAA----TIVEGTAGGGAITVKMNGHREVQSITISPEVVDPDDVEMLQDLLLVAINDASRKAQ   82 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHhc----cEEEEEEcCCeEEEEEEcCccEEEEEECHHHcCcccHHHHHHHHHHHHHHHHHHHH
Confidence            45666677777665544332    34555544556666663  33333 2 67766    33567777777777777777


Q ss_pred             HHHHhhhcCCCCCCCCC
Q 029494          172 ERMSDLAQSLGMPQGLS  188 (192)
Q Consensus       172 e~m~~ltGGl~lP~Gl~  188 (192)
                      +.+.+..+.+  .+||+
T Consensus        83 ~~~~~~m~~~--tgg~~   97 (100)
T PRK14627         83 QLAEERMQPL--TGGLK   97 (100)
T ss_pred             HHHHHHHHHH--hcCCC
Confidence            7777666543  34555

>PF10904 DUF2694: Protein of unknown function (DUF2694); InterPro: IPR024426 This family of proteins with unknown function appears to be restricted to Mycobacterium spp

Probab=93.45  E-value=0.41  Score=37.07  Aligned_cols=64  Identities=20%  Similarity=0.167  Sum_probs=55.4

Q ss_pred             cEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029494          113 AEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSD  176 (192)
Q Consensus       113 ~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~~Ka~e~~~e~m~~  176 (192)
                      -.|+....+|.|-|..-..|-+.+|.|+|.+++.|...|.+-|+..-.=|.=++.=.+.++|..
T Consensus         6 ~aF~~~~psg~IlVrs~rgG~~~~V~L~e~am~~d~~~LAq~Il~~AdVa~Lra~levR~eiva   69 (101)
T PF10904_consen    6 PAFDTVHPSGHILVRSCRGGYIHGVALSEAAMQTDAQTLAQEILLTADVAYLRAQLEVREEIVA   69 (101)
T ss_pred             ccccccCCCCCEEEEeeccccceeeEecHHHhcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            4588889999999999999999999999999988999999999888777777777666666654

>PRK14625 hypothetical protein; Provisional

Probab=93.43  E-value=0.35  Score=37.80  Aligned_cols=88  Identities=20%  Similarity=0.244  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHh----ccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHH
Q 029494           92 VKKAQMVVQVEAVRVQKELA----AAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSV  167 (192)
Q Consensus        92 ~KkaQe~mQ~km~klQeeL~----~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~~Ka~  167 (192)
                      -+++++ +|+++....-+-.    -++|+.+..+..++|+++..-      |||+=.+-=-+.+-..+-+|+.++-+..+
T Consensus        15 Q~km~~-~Q~el~~~~v~g~sggG~VkV~~~G~~~v~~I~Idp~l------l~~eD~e~LeDLI~aA~NdA~~k~~~~~~   87 (109)
T PRK14625         15 QQKLAD-AQARLAETTVEGTSGGGMVTVTLMGNGELVRVLMDESL------VQPGEGEVIADLIVAAHADAKKKLDAKQA   87 (109)
T ss_pred             HHHHHH-HHHHHhccEEEEEECCCeEEEEEecCceEEEEEECHHH------cCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355555 4667665543332    377778888888899988742      24332211134677889999999999999


Q ss_pred             HHHHHHHHhhhc--CCCCCCCCC
Q 029494          168 LAMKERMSDLAQ--SLGMPQGLS  188 (192)
Q Consensus       168 e~~~e~m~~ltG--Gl~lP~Gl~  188 (192)
                      +.+.+....+.+  . ++| |++
T Consensus        88 ~~m~~~tgg~~~~lP-G~~-~~~  108 (109)
T PRK14625         88 QLMQEAAGPMAGLMG-GLP-GMK  108 (109)
T ss_pred             HHHHHHhcCCCCCCC-CCC-CCC
Confidence            999988888841  2 567 765

>PRK14623 hypothetical protein; Provisional

Probab=93.14  E-value=0.31  Score=37.94  Aligned_cols=82  Identities=10%  Similarity=0.132  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHh----ccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHH
Q 029494           92 VKKAQMVVQVEAVRVQKELA----AAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSV  167 (192)
Q Consensus        92 ~KkaQe~mQ~km~klQeeL~----~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~~Ka~  167 (192)
                      -+++++ +|+++.+..-+-.    -++|+.+..+..++|.++..-  ++   |++.|+   +.|-..|-+|+.+|-+.++
T Consensus        14 Q~km~~-~Qeel~~~~v~g~sggG~VkVt~~G~~~i~~i~Idp~~--l~---D~E~Le---DLI~aAvn~A~~k~~~~~~   84 (106)
T PRK14623         14 QQKVEA-TKKRLDTVLIDEQSSDGLLKVTVTANREIKSISIDDEL--LE---DKEQLE---DYLVLTLNKAIEKATEINE   84 (106)
T ss_pred             HHHHHH-HHHHHhccEEEEEECCceEEEEEEcCccEEEEEECHHH--cC---CHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            355555 4667775553333    377888888889999998743  33   888884   4778889999999999999


Q ss_pred             HHHHHHHH-hh--hcCCC
Q 029494          168 LAMKERMS-DL--AQSLG  182 (192)
Q Consensus       168 e~~~e~m~-~l--tGGl~  182 (192)
                      +.+.+... .+  ..||+
T Consensus        85 ~~m~~~t~~g~~~~PG~~  102 (106)
T PRK14623         85 AELGAVAKEGMPDIPGMD  102 (106)
T ss_pred             HHHHHHHhcCCCCCCCch
Confidence            99999884 55  24664

>PRK14621 hypothetical protein; Provisional

Probab=93.09  E-value=0.21  Score=39.03  Aligned_cols=86  Identities=10%  Similarity=0.111  Sum_probs=62.1

Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHH
Q 029494           81 ILGNMQNLYETVKKAQMVVQVEAVRVQKELAA----AEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVT  156 (192)
Q Consensus        81 m~gnm~~L~~~~KkaQe~mQ~km~klQeeL~~----~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~  156 (192)
                      ||...+.|-   +++++ +|+++++..-+-..    ++|+.+..+..+.|+++..  +.+   |++.++   +.+-..+-
T Consensus         9 mmkqaq~mQ---~km~~-~Q~eL~~~~v~g~sGgG~VkV~~~G~~~i~~i~Idp~--lld---D~e~Le---DLI~aA~N   76 (111)
T PRK14621          9 MMKQIQQAG---EKMQD-VQKQLEKLVAHGEAGGGMVKASVNGKQKLLSLAIDPE--IMD---DVEMVQ---DLVVAAVN   76 (111)
T ss_pred             HHHHHHHHH---HHHHH-HHHHHHccEEEEEECCceEEEEEEcCceEEEEEECHH--HcC---CHHHHH---HHHHHHHH
Confidence            334444444   45555 46677654433332    7888888888999999986  333   888874   46788899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Q 029494          157 EAYKDAHQKSVLAMKERMSDLA  178 (192)
Q Consensus       157 aAvNdA~~Ka~e~~~e~m~~lt  178 (192)
                      +|+.+|-+.+++.+.+....+-
T Consensus        77 dA~~ka~~~~~e~m~~~tgGm~   98 (111)
T PRK14621         77 SALEESAKLAQEEISKVAGGMM   98 (111)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999998764

>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown

Probab=91.21  E-value=1  Score=32.96  Aligned_cols=78  Identities=17%  Similarity=0.198  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHHHHHh----ccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHH
Q 029494           93 KKAQMVVQVEAVRVQKELA----AAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVL  168 (192)
Q Consensus        93 KkaQe~mQ~km~klQeeL~----~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~~Ka~e  168 (192)
                      +++++ +|+++.+..-+-.    .++|+....|..+.|+++...-=   ..||+.|   .+.|-+.+-+|..+|.++..+
T Consensus         9 ~~~~~-~~~~l~~~~~~~~s~~g~V~V~v~g~g~v~~i~i~~~~~~---~~~~~~L---~~~I~~A~n~A~~~a~~~~~~   81 (93)
T PF02575_consen    9 EKMEE-AQEELAEIEVTGTSGDGLVTVTVNGNGEVVDIEIDPSALR---PLDPEEL---EDLIVEAVNDAQKKAREKAQE   81 (93)
T ss_dssp             HHHHH-HHHHHHHSEEEEEETCCTEEEEEETTS-EEEEEE-GGGGC---TS-HHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHhcCEEEEEECCCEEEEEEecCceEEEEEEehHhhc---cCCHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            44444 4666665443332    36777777777888888876431   2566666   356778888888888888888


Q ss_pred             HHHHHHHhh
Q 029494          169 AMKERMSDL  177 (192)
Q Consensus       169 ~~~e~m~~l  177 (192)
                      .+.+.++.+
T Consensus        82 ~~~~~~g~~   90 (93)
T PF02575_consen   82 EMAELTGGL   90 (93)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHhcCC
Confidence            888887765

It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.

>PRK14622 hypothetical protein; Provisional

Probab=91.13  E-value=1.2  Score=34.40  Aligned_cols=83  Identities=12%  Similarity=0.118  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeC--ccccc-C-CHHHH----HHHHHHHHHHHHHHHHHHHH
Q 029494          100 QVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEIT--EAAME-L-GAEKL----SLLVTEAYKDAHQKSVLAMK  171 (192)
Q Consensus       100 Q~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Id--p~~l~-~-D~E~L----edLI~aAvNdA~~Ka~e~~~  171 (192)
                      -++++++|++++++.-+=.    ..+|+....|-.+.|.++  -.+.+ . |++.|    .+.+-..+-.|+..|.+..+
T Consensus         7 mkqaq~mQ~~m~~~q~el~----~~~v~g~sggG~VkV~~nG~~~v~~i~Idp~~l~~ed~e~LeDLI~aA~N~A~~k~~   82 (103)
T PRK14622          7 MRQAKKLEKAMADAKEKLA----EIAVEAESGGGLVKVAMNGKCEVTRLTVDPKAVDPNDKAMLEDLVTAAVNAAVEKAR   82 (103)
T ss_pred             HHHHHHHHHHHHHHHHHHh----ccEEEEEECCceEEEEEEcCceEEEEEECHHHcCcccHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666665543332    244555545556666663  23333 2 66666    34666667777777777777


Q ss_pred             HHHHhhhcCCCCCCCCC
Q 029494          172 ERMSDLAQSLGMPQGLS  188 (192)
Q Consensus       172 e~m~~ltGGl~lP~Gl~  188 (192)
                      +.+.+..+.+  .+||+
T Consensus        83 ~~~~~~m~~~--tgg~~   97 (103)
T PRK14622         83 TAADESMSKA--TGGIK   97 (103)
T ss_pred             HHHHHHHHHH--hCCCC
Confidence            7666665543  33554

>PRK00587 hypothetical protein; Provisional

Probab=86.37  E-value=4.8  Score=30.93  Aligned_cols=80  Identities=9%  Similarity=0.020  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHH---hccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHH
Q 029494           93 KKAQMVVQVEAVRVQKEL---AAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLA  169 (192)
Q Consensus        93 KkaQe~mQ~km~klQeeL---~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~~Ka~e~  169 (192)
                      +++++ +|+++.+..-+-   --++|+.+..+..++|+++..-  ++ .=|++.+   -+.|-..+-+|+..+-+..++.
T Consensus        15 ~km~~-~QeeL~~~~v~g~~gGlVkV~~nG~~~i~~i~Idp~l--ld-~eD~E~L---eDLI~aA~NdA~~k~~e~~~e~   87 (99)
T PRK00587         15 NTMEK-KQKEFEEKEFDFDYKKYILIKIKGNLNIEKIEINKEL--ID-PEDKETL---QDMLREAINEAISITCKERDAI   87 (99)
T ss_pred             HHHHH-HHHHHhccEEEEEcCCeEEEEEEcCccEEEEEECHHH--cC-CccHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            34444 355555443221   1256666666677777777532  10 0123333   2355667777777777777777


Q ss_pred             HHHHHHhhhc
Q 029494          170 MKERMSDLAQ  179 (192)
Q Consensus       170 ~~e~m~~ltG  179 (192)
                      +.+.|..++|
T Consensus        88 m~~~~~~~~~   97 (99)
T PRK00587         88 MNSTIPKGTG   97 (99)
T ss_pred             HHHhcCCCCC
Confidence            7777777665

>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase

Probab=82.97  E-value=4.3  Score=29.25  Aligned_cols=43  Identities=14%  Similarity=0.004  Sum_probs=35.4

Q ss_pred             EEEEEECCCeEEEEEe-cCcceEEEEeCcccccC-CHHHHHHHHH
Q 029494          114 EFDGYCEGELIKVTLS-GNQQPVRTEITEAAMEL-GAEKLSLLVT  156 (192)
Q Consensus       114 ~vtgsSggGlVkVtvn-G~gev~~V~Idp~~l~~-D~E~LedLI~  156 (192)
                      +.+..-.+|.|.|.++ -+|.|++|+|.-+++.. +.+.|++.++
T Consensus         8 ~~~~rf~~G~v~v~~~V~~G~I~~i~i~gDf~~~~~i~~le~~L~   52 (86)
T PF10437_consen    8 SKERRFPWGTVEVHLNVKNGIIKDIKIYGDFFGPEDIEELEEALI   52 (86)
T ss_dssp             EEEEEETTEEEEEEEEEETTEEEEEEEEECBS-CCCHHHHHHHHT
T ss_pred             eeeeEcCCceEEEEEEEECCEEEEEEEECCCCCchHHHHHHHHHH
Confidence            4556677899999888 68999999999999986 8999988774

There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.

>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A

Probab=80.97  E-value=4.9  Score=28.28  Aligned_cols=36  Identities=14%  Similarity=0.325  Sum_probs=23.0

Q ss_pred             CeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHH
Q 029494          122 ELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYK  160 (192)
Q Consensus       122 GlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvN  160 (192)
                      -.|+|+++.+|.|.+++|..+-   .-+.+-+.++.|+.
T Consensus        28 ~~V~i~i~~dG~v~~~~i~~sS---G~~~~D~av~~ai~   63 (85)
T PF13103_consen   28 VTVRITIDPDGRVISVRIVKSS---GNPAFDAAVRRAIR   63 (85)
T ss_dssp             EEEEEEE-TTSBEEEEEEEE-----S-HHHHHHHHHHHH
T ss_pred             EEEEEEECCCCCEEEEEEecCC---CCHHHHHHHHHHHH
Confidence            3588899999999999887654   33445555555555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	192
1pug_A	109	Structure Of E. Coli Ybab Length = 109		2e-05

>pdb|1PUG|A Chain A, Structure Of E. Coli Ybab Length = 109

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 83  GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
           G + NL +  ++ Q  +Q    ++Q+E+A  E  G     L+KVT++G     R EI  +
Sbjct: 5   GGLGNLMKQAQQMQEKMQ----KMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPS 60
Query: 143 AMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGL 187
            +E   E L  LV  A+ DA ++     KE+M+ ++  + +P G 
Sbjct: 61  LLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPGF 105

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	192
1j8b_A	112	YBAB; hypothetical protein, structural genomics, s	2e-13
1ybx_A	143	Conserved hypothetical protein; ST genomics, PSI,	6e-13
3f42_A	99	Protein HP0035; helicobacter pylori unknown-functi	1e-09

>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A Length = 112

 Score = 63.1 bits (154), Expect = 2e-13
 Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 4/105 (3%)

Query: 83  GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
           G +  L   +K+AQ + Q +  ++Q+E+A  E  G     L+K+T++G     R +I  +
Sbjct: 8   GGLGGL---MKQAQQM-QEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPS 63

Query: 143 AMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGL 187
            ME   E L  L+  A+ DA +++    KE+M+ +   + +P G+
Sbjct: 64  LMEDDKEMLEDLIAAAFNDAVRRAEELQKEKMASVTAGMPLPPGM 108

>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum} Length = 143

 Score = 62.1 bits (151), Expect = 6e-13
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 5/109 (4%)

Query: 80  GILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEI 139
           G  GN+ NL   VK+AQ + Q +  RVQ+EL     +    G  + V  +G +      I
Sbjct: 38  GFGGNINNL---VKQAQKM-QRDMERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITI 93

Query: 140 TEAAMELG-AEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGL 187
               ++    E L  L+  A  +A +K+   +   +S +   LG   GL
Sbjct: 94  KPEVVDPDDVEMLQDLILAAVNEALRKADEMVTAEISKITGGLGGIPGL 142

>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, P protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori} Length = 99

 Score = 52.3 bits (126), Expect = 1e-09
 Identities = 12/99 (12%), Positives = 37/99 (37%), Gaps = 5/99 (5%)

Query: 84  NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAA 143
           +   L         + + E  +++++           G ++ V+ +G  + V  +I ++ 
Sbjct: 4   DFSQL---GGLLDGM-KKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSL 59

Query: 144 MELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLG 182
           +E   E + + +  A  D ++      K    ++  +  
Sbjct: 60  LE-DKEAMQIYLMSALNDGYKAVEENRKNLAFNMLGNFA 97

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	192
1j8b_A	112	YBAB; hypothetical protein, structural genomics, s	100.0
1ybx_A	143	Conserved hypothetical protein; ST genomics, PSI,	100.0
3f42_A	99	Protein HP0035; helicobacter pylori unknown-functi	99.96
1ybx_A	143	Conserved hypothetical protein; ST genomics, PSI,	96.95
1j8b_A	112	YBAB; hypothetical protein, structural genomics, s	94.74
3f42_A	99	Protein HP0035; helicobacter pylori unknown-functi	82.85

>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A

Probab=100.00  E-value=3.4e-35  Score=226.96  Aligned_cols=104  Identities=28%  Similarity=0.426  Sum_probs=88.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHH
Q 029494           84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAH  163 (192)
Q Consensus        84 nm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~  163 (192)
                      ||++|+   +|||+ ||++++++|+||++++|+|+|+||+|+||+||+++|++|+|||+++++|+|+|||||++|+|+|+
T Consensus         9 nm~~mm---kqaq~-mQ~~m~~~QeeL~~~~v~g~sggG~V~Vt~~G~~ev~~i~Idp~~~~~d~E~LedlI~aA~ndA~   84 (112)
T 1j8b_A            9 GLGGLM---KQAQQ-MQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLMEDDKEMLEDLIAAAFNDAV   84 (112)
T ss_dssp             -CCCHH---HHHHH-HHHHHHHHHHHHTTSEEEEEEGGGTEEEEEETTCCEEEEEECGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHH---HHHHH-HHHHHHHHHHHHhccEEEEEECCCEEEEEEecCceEEEEEECHHHHhCCHHHHHHHHHHHHHHHH
Confidence            566665   77787 79999999999999999999999999999999999999999999998899999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCCCCCC
Q 029494          164 QKSVLAMKERMSDLAQSLGMPQGLSEGL  191 (192)
Q Consensus       164 ~Ka~e~~~e~m~~ltGGl~lP~Gl~~g~  191 (192)
                      +++++.++++|++++|||+|||||+.++
T Consensus        85 ~ka~~~~~e~m~~~tgGl~lppG~~~pf  112 (112)
T 1j8b_A           85 RRAEELQKEKMASVTAGMPLPPGMKFPF  112 (112)
T ss_dssp             HHHHHHHHHHHHHHTCC-----------
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence            9999999999999999999988997653

>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}

Probab=100.00  E-value=2.6e-34  Score=230.76  Aligned_cols=101  Identities=26%  Similarity=0.318  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccC-CHHHHHHHHHHHHHHHHHH
Q 029494           87 NLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMEL-GAEKLSLLVTEAYKDAHQK  165 (192)
Q Consensus        87 ~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~-D~E~LedLI~aAvNdA~~K  165 (192)
                      ||.+++||||+ ||++++++|+||++++|+|+|+||+|+||+||+++|++|+|||+++++ |+|+|||||++|+|||+++
T Consensus        42 nm~~mmkQAQk-mQ~km~k~QeeL~~~eveg~sGgGlVkVtvnG~~ev~~I~Idp~lldpeD~E~LeDLI~aAvNdA~~k  120 (143)
T 1ybx_A           42 NINNLVKQAQK-MQRDMERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVEMLQDLILAAVNEALRK  120 (143)
T ss_dssp             -CHHHHHHHHH-HHHHHHHHHHHHHHCEEEEEETTTTEEEEEETTCCEEEEEECGGGCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHH-HHHHHHHHHHHHhcCEEEEEECCCEEEEEEecCceEEEEEECHHHcCCcCHHHHHHHHHHHHHHHHHH
Confidence            44444588888 799999999999999999999999999999999999999999999996 9999999999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCC
Q 029494          166 SVLAMKERMSDLAQSLGMPQGLS  188 (192)
Q Consensus       166 a~e~~~e~m~~ltGGl~lP~Gl~  188 (192)
                      +++.++++|.+++|||+|||||+
T Consensus       121 a~e~~~e~M~~ltgGl~lpPG~f  143 (143)
T 1ybx_A          121 ADEMVTAEISKITGGLGGIPGLF  143 (143)
T ss_dssp             HHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHhCCCCCCCCCC
Confidence            99999999999999999977973

>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, P protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}

Probab=99.96  E-value=2.1e-29  Score=191.09  Aligned_cols=92  Identities=12%  Similarity=0.188  Sum_probs=85.1

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHH
Q 029494           83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDA  162 (192)
Q Consensus        83 gnm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA  162 (192)
                      +||++||      |+ ||++|+++|++|++++|+|+|+||+|+||+||+++|++|+|||+++ +|+|+|||||++|+|+|
T Consensus         6 gnm~~lm------q~-mQ~~m~~~QeeL~~~~v~g~sggG~V~Vt~~G~~ev~~i~Idp~~~-eD~E~LeDLI~aA~ndA   77 (99)
T 3f42_A            6 SQLGGLL------DG-MKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLL-EDKEAMQIYLMSALNDG   77 (99)
T ss_dssp             HHHHHHH------HH-HHHHHHHHHHHHHTCEEEEEEGGGTEEEEEETTSCEEEEEECGGGG-GCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHH------HH-HHHHHHHHHHHHhcCEEEEEECCCEEEEEEecCceEEEEEECHHHh-CCHHHHHHHHHHHHHHH
Confidence            4788887      44 6999999999999999999999999999999999999999999999 79999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCC
Q 029494          163 HQKSVLAMKERMSDLAQSLG  182 (192)
Q Consensus       163 ~~Ka~e~~~e~m~~ltGGl~  182 (192)
                      ++++++.++++|++++|||+
T Consensus        78 ~~k~~~~~~e~m~~ltgGl~   97 (99)
T 3f42_A           78 YKAVEENRKNLAFNMLGNFA   97 (99)
T ss_dssp             HHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999884

>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}

Probab=96.95  E-value=0.0035  Score=50.00  Aligned_cols=90  Identities=16%  Similarity=0.172  Sum_probs=64.3

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHH-------hccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHH
Q 029494           82 LGNMQNLYETVKKAQMVVQVEAVRVQKEL-------AAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLL  154 (192)
Q Consensus        82 ~gnm~~L~~~~KkaQe~mQ~km~klQeeL-------~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedL  154 (192)
                      ++||++|+++++++|+.|++--+++.+.-       .-++|+.+..+..+.|+++..-  ++= -|.+.|   .+.|-..
T Consensus        40 ~gnm~~mmkQAQkmQ~km~k~QeeL~~~eveg~sGgGlVkVtvnG~~ev~~I~Idp~l--ldp-eD~E~L---eDLI~aA  113 (143)
T 1ybx_A           40 GGNINNLVKQAQKMQRDMERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEV--VDP-DDVEML---QDLILAA  113 (143)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHCEEEEEETTTTEEEEEETTCCEEEEEECGGG--CCT-TCHHHH---HHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhcCEEEEEECCCEEEEEEecCceEEEEEECHHH--cCC-cCHHHH---HHHHHHH
Confidence            35899999999999987665555555432       2378888888999999998763  210 244555   3478899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Q 029494          155 VTEAYKDAHQKSVLAMKERMSDL  177 (192)
Q Consensus       155 I~aAvNdA~~Ka~e~~~e~m~~l  177 (192)
                      |-+|+.+|.+.+++.+.+....+
T Consensus       114 vNdA~~ka~e~~~e~M~~ltgGl  136 (143)
T 1ybx_A          114 VNEALRKADEMVTAEISKITGGL  136 (143)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999988766

>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A

Probab=94.74  E-value=0.024  Score=43.07  Aligned_cols=94  Identities=12%  Similarity=0.174  Sum_probs=62.6

Q ss_pred             CccccHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHH
Q 029494           80 GILGNMQNLYETVKKAQMVVQVEAVRVQKELA----AAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLV  155 (192)
Q Consensus        80 Gm~gnm~~L~~~~KkaQe~mQ~km~klQeeL~----~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI  155 (192)
                      .|+...+.|-   +++++ +|+++++..-+-.    -++|+.+..+..+.|+++..  +++  -|++.|+   +.|-..|
T Consensus        12 ~mmkqaq~mQ---~~m~~-~QeeL~~~~v~g~sggG~V~Vt~~G~~ev~~i~Idp~--~~~--~d~E~Le---dlI~aA~   80 (112)
T 1j8b_A           12 GLMKQAQQMQ---EKMQK-MQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPS--LME--DDKEMLE---DLIAAAF   80 (112)
T ss_dssp             CHHHHHHHHH---HHHHH-HHHHHTTSEEEEEEGGGTEEEEEETTCCEEEEEECGG--GGG--SCHHHHH---HHHHHHH
T ss_pred             HHHHHHHHHH---HHHHH-HHHHHhccEEEEEECCCEEEEEEecCceEEEEEECHH--HHh--CCHHHHH---HHHHHHH
Confidence            3434444444   45555 4667765543333    37888888899999999875  444  4777774   4788999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh--hcCCCCC
Q 029494          156 TEAYKDAHQKSVLAMKERMSDL--AQSLGMP  184 (192)
Q Consensus       156 ~aAvNdA~~Ka~e~~~e~m~~l--tGGl~lP  184 (192)
                      -+|+.+|.+.+++.+.+....+  ..||++|
T Consensus        81 ndA~~ka~~~~~e~m~~~tgGl~lppG~~~p  111 (112)
T 1j8b_A           81 NDAVRRAEELQKEKMASVTAGMPLPPGMKFP  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCC----------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence            9999999999999999998866  2478877

>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, P protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}

Probab=82.85  E-value=2.3  Score=31.45  Aligned_cols=81  Identities=10%  Similarity=0.117  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh----ccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHH
Q 029494           85 MQNLYETVKKAQMVVQVEAVRVQKELA----AAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYK  160 (192)
Q Consensus        85 m~~L~~~~KkaQe~mQ~km~klQeeL~----~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvN  160 (192)
                      |+.|-+.|+++    |+++++..-+-.    -++|+.+..+..+.|+++..--     =|++.|+   +.+-..|-+|+.
T Consensus        12 mq~mQ~~m~~~----QeeL~~~~v~g~sggG~V~Vt~~G~~ev~~i~Idp~~~-----eD~E~Le---DLI~aA~ndA~~   79 (99)
T 3f42_A           12 LDGMKKEFSQL----EEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLL-----EDKEAMQ---IYLMSALNDGYK   79 (99)
T ss_dssp             HHHHHHHHHHH----HHHHHTCEEEEEEGGGTEEEEEETTSCEEEEEECGGGG-----GCHHHHH---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH----HHHHhcCEEEEEECCCEEEEEEecCceEEEEEECHHHh-----CCHHHHH---HHHHHHHHHHHH
Confidence            58888666665    667775544433    3788888889999999998743     3777774   578899999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 029494          161 DAHQKSVLAMKERMSDL  177 (192)
Q Consensus       161 dA~~Ka~e~~~e~m~~l  177 (192)
                      ++.+..++.+.+..+.+
T Consensus        80 k~~~~~~e~m~~ltgGl   96 (99)
T 3f42_A           80 AVEENRKNLAFNMLGNF   96 (99)
T ss_dssp             HHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            99999999999888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	192
d1j8ba_	92	d.222.1.1 (A:) Hypothetical protein HI0442 {Haemop	3e-14

>d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus influenzae [TaxId: 727]} Length = 92

class: Alpha and beta proteins (a+b)
fold: YbaB-like
superfamily: YbaB-like
family: YbaB-like
domain: Hypothetical protein HI0442
species: Haemophilus influenzae [TaxId: 727]

 Score = 63.1 bits (154), Expect = 3e-14
 Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 85  MQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAM 144
           +  L   +K+AQ + Q +  ++Q+E+A  E  G     L+K+T++G     R +I  + M
Sbjct: 1   LGGL---MKQAQQM-QEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLM 56

Query: 145 ELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQ 179
           E   E L  L+  A+ DA +++    KE+M+ +  
Sbjct: 57  EDDKEMLEDLIAAAFNDAVRRAEELQKEKMASVTA 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	192
d1j8ba_	92	Hypothetical protein HI0442 {Haemophilus influenza	99.95
d1j8ba_	92	Hypothetical protein HI0442 {Haemophilus influenza	93.19

>d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: YbaB-like
superfamily: YbaB-like
family: YbaB-like
domain: Hypothetical protein HI0442
species: Haemophilus influenzae [TaxId: 727]

Probab=99.95  E-value=1.7e-28  Score=181.20  Aligned_cols=88  Identities=30%  Similarity=0.419  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 029494           92 VKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMK  171 (192)
Q Consensus        92 ~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~~Ka~e~~~  171 (192)
                      |+|||+ ||++++++|++|++++|+|++++|+|+||+||+++|++|+|||+++++|+|+|+|||++|||+|++++++..+
T Consensus         5 mkqaq~-mq~~m~~~q~eL~~~~v~~~sg~g~V~V~~~G~~~v~~i~Id~~~l~~d~e~LedlI~~A~N~A~~k~~~~~~   83 (92)
T d1j8ba_           5 MKQAQQ-MQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLMEDDKEMLEDLIAAAFNDAVRRAEELQK   83 (92)
T ss_dssp             HHHHHH-HHHHHHHHHHHHTTSEEEEEEGGGTEEEEEETTCCEEEEEECGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHhCeEEEEEECCCEEEEEEECCeEEEEEEECHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            488888 7999999999999999999999999999999999999999999999889999999999999999999999999


Q ss_pred             HHHHhhhcC
Q 029494          172 ERMSDLAQS  180 (192)
Q Consensus       172 e~m~~ltGG  180 (192)
                      ++|++++||
T Consensus        84 ~~m~~~tGG   92 (92)
T d1j8ba_          84 EKMASVTAG   92 (92)
T ss_dssp             HHHHHHTCC
T ss_pred             HHHHhhcCC
Confidence            999999987

>d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: YbaB-like
superfamily: YbaB-like
family: YbaB-like
domain: Hypothetical protein HI0442
species: Haemophilus influenzae [TaxId: 727]

Probab=93.19  E-value=0.043  Score=38.25  Aligned_cols=55  Identities=7%  Similarity=0.095  Sum_probs=43.9

Q ss_pred             cEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029494          113 AEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERM  174 (192)
Q Consensus       113 ~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~~Ka~e~~~e~m  174 (192)
                      ++|+....+-.+.|.++.  ++.+ + |++.|+   +.|-..+-.|+.+|.+.+++.+.+.+
T Consensus        36 V~V~~~G~~~v~~i~Id~--~~l~-~-d~e~Le---dlI~~A~N~A~~k~~~~~~~~m~~~t   90 (92)
T d1j8ba_          36 VKITINGAHNCRRIDIDP--SLME-D-DKEMLE---DLIAAAFNDAVRRAEELQKEKMASVT   90 (92)
T ss_dssp             EEEEEETTCCEEEEEECG--GGGG-S-CHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEECCeEEEEEEECH--HHhc-C-cHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            778888888899999986  4444 3 777774   47778999999999999999888764