Citrus Sinensis ID: 029502

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
Protein Sequence
MVKMEKQEEVVTVKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVISSLFLSLSCIYEFTYGFWWQ
Secondary Structure (PSIPRED)
ccccccccEEEEEEEEEEEcccccccccccEEEEccccccccccccccccccccEEEEEEEEEcccccccEEEcccccccccccccccEEEEEEEcccccccccccccccccEEEccccccccccccccEEEEEEcccEEEEEEccccccccccccccccEEEEEcccccccccccccccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEEEEEccHHHcccccEEEEEccccccccccccEEEccccccEEEEEEEccccccEEEEEEccHHHHHccccccccEEEEEcccccccccccccccccEEEEcccccccccccHHHEEEEEEccccEEEEcccccccccccccccEEEEEEEEcccccccccHHHHHEEEEEEEccccc
Coil and Loop (DISEMBL)
MVKMEKQEEVVTVKLRAIEATAESFKEYGQVIEasadgeefgpqdaqldlsrgiprfyvmhlenrplkfstithHASVTQClgsigghvwylgvakpsildstetegdmgtnivrshcghfyvppaiedVRVFKIagpkflklnrgtwhagplfkaddmdfynlelsntnvISSLFLSLSCIyeftygfwwq
Flexible Loop (DISEMBL)
mvkmekqeevVTVKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVISSLFLSLSCIYEFTYGFWWQ
Low Complexity Region (SEG)
MVKMEKQEEVVTVKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVISSLFLSLSCIYEFTYGFWWQ
Disordered region (IsUnstruct)
**********VTVKLRAIEATAESFKEYGQVI***************LDLSRGIPRFYVMHLENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVISSLFLSLSCIYEFTYGFWW*
Disordered Region (DISOPRED)
**************LRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDS********TNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVISSLFLSLSCIYEFTYGFWWQ
Disordered Region (DISEMBL)
*********VVTVKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVISSLFLSLSCIYEFTYGFWWQ
Disordered Region (DISPRO)
*******EEVVTVKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILD**E***DMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVISSLFLSLSCIYEFTYGFWWQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVKMEKQEEVVTVKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVISSLFLSLSCIYEFTYGFWWQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
147819145	319	hypothetical protein VITISV_021301 [Viti	0.869	0.523	0.782	6e-75
357443405	186	hypothetical protein MTR_1g095890 [Medic	0.859	0.887	0.777	3e-73
225449156	192	PREDICTED: uncharacterized protein LOC10	0.833	0.833	0.8	3e-73
388497408	185	unknown [Lotus japonicus]	0.859	0.891	0.751	2e-70
351724593	185	uncharacterized protein LOC100526980 [Gl	0.833	0.864	0.775	8e-69
129594025	185	putative ureidoglycolate hydrolase [Phas	0.859	0.891	0.733	1e-68
226490954	244	uncharacterized protein LOC100279019 [Ze	0.890	0.700	0.697	8e-68
195643516	189	hypothetical protein [Zea mays] gi|19565	0.880	0.894	0.705	4e-67
351723905	187	uncharacterized protein LOC100306085 [Gl	0.822	0.844	0.753	1e-65
242054885	279	hypothetical protein SORBIDRAFT_03g03892	0.890	0.612	0.680	1e-64

>gi|147819145|emb|CAN78082.1| hypothetical protein VITISV_021301 [Vitis vinifera]

 Score =  285 bits (729), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 133/170 (78%), Positives = 150/170 (88%), Gaps = 3/170 (1%)

Query: 13  VKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTI 72
           +KL  IEAT E+FKE+GQVI  S DGE+FGPQDAQLDLSRGIPRFY+MHLE++PLKFS+I
Sbjct: 14  LKLTPIEATPETFKEFGQVIGVSPDGEKFGPQDAQLDLSRGIPRFYIMHLEDQPLKFSSI 73

Query: 73  THHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRV 132
           THHASVTQCLGSIGGHVWYLGVAKPSILD  E  GD G NIV+S  GHFY+PPA+EDVR+
Sbjct: 74  THHASVTQCLGSIGGHVWYLGVAKPSILDPDEINGDAGMNIVKSRRGHFYMPPAVEDVRI 133

Query: 133 FKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVISSLFLSLSCI 182
           F+I+GPKFLKLNRGTWHAGPLFKAD MDFYNLELS+TN+I   FL+L  I
Sbjct: 134 FRISGPKFLKLNRGTWHAGPLFKADTMDFYNLELSDTNLI---FLTLIVI 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443405|ref|XP_003591980.1| hypothetical protein MTR_1g095890 [Medicago truncatula] gi|355481028|gb|AES62231.1| hypothetical protein MTR_1g095890 [Medicago truncatula]

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 129/166 (77%), Positives = 148/166 (89%), Gaps = 1/166 (0%)

Query: 8   EEVVTVKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRG-IPRFYVMHLENRP 66
           E V  VK++AIEAT  +FK+YGQVIEAS+DGE FGP DAQLDLS+G IPRFY+MHLENRP
Sbjct: 2   ESVKVVKVKAIEATPATFKDYGQVIEASSDGEGFGPNDAQLDLSKGGIPRFYIMHLENRP 61

Query: 67  LKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPA 126
           L+FS ITHHASVTQCLGSIGG+VWYLGVAKPSI+DS E + D+G  +V+S  GHFYVPPA
Sbjct: 62  LEFSNITHHASVTQCLGSIGGNVWYLGVAKPSIVDSNEIKDDLGKTVVKSRSGHFYVPPA 121

Query: 127 IEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVI 172
           IEDV+VFK++G KFLKLNRGTWHAGPLFK+D MDFYNLELSNTNV+
Sbjct: 122 IEDVQVFKVSGSKFLKLNRGTWHAGPLFKSDTMDFYNLELSNTNVV 167

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449156|ref|XP_002278214.1| PREDICTED: uncharacterized protein LOC100263359 [Vitis vinifera] gi|296086072|emb|CBI31513.3| unnamed protein product [Vitis vinifera]

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 128/160 (80%), Positives = 144/160 (90%)

Query: 13  VKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTI 72
           +KL  IEAT E+FKE+GQVI  S DGE+FGPQDAQLDLSRGIPRFY+MHLE++PLKFS+I
Sbjct: 14  LKLTPIEATPETFKEFGQVIGVSPDGEKFGPQDAQLDLSRGIPRFYIMHLEDQPLKFSSI 73

Query: 73  THHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRV 132
           THHASVTQCLGSIGGHVWYLGVAKPSIL+  E  GD G NIV+S  GHFYVPPA+EDVR+
Sbjct: 74  THHASVTQCLGSIGGHVWYLGVAKPSILEPDEINGDAGMNIVKSRRGHFYVPPAVEDVRI 133

Query: 133 FKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVI 172
           F+I+GPKFLKLN GTWHAGPLFKAD MDFYNLELS+TNV+
Sbjct: 134 FRISGPKFLKLNHGTWHAGPLFKADTMDFYNLELSDTNVV 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497408|gb|AFK36770.1| unknown [Lotus japonicus]

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 124/165 (75%), Positives = 139/165 (84%)

Query: 8   EEVVTVKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPL 67
           EE   +KL+ IEAT  +FK+YGQVI+AS DG  FGP DAQLDL+RGIPRFY+MHLENRPL
Sbjct: 2   EEPKLLKLKPIEATPATFKDYGQVIQASPDGHGFGPHDAQLDLTRGIPRFYIMHLENRPL 61

Query: 68  KFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAI 127
           KFS ITHHASVTQCLGSIGGH WYLGVAKPSI+DS+E + D    +V+S  GH YVPPAI
Sbjct: 62  KFSNITHHASVTQCLGSIGGHAWYLGVAKPSIVDSSEIKDDTDRKVVQSRSGHLYVPPAI 121

Query: 128 EDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVI 172
           ED+ VFK+ G KFLKLNRGTWHAGP+FKAD MDFYNLELSNTN I
Sbjct: 122 EDIHVFKVTGSKFLKLNRGTWHAGPIFKADSMDFYNLELSNTNEI 166

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724593|ref|NP_001236807.1| uncharacterized protein LOC100526980 [Glycine max] gi|255631298|gb|ACU16016.1| unknown [Glycine max]

 Score =  265 bits (676), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 124/160 (77%), Positives = 138/160 (86%)

Query: 13  VKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTI 72
           V L+AIEAT  +FK+YGQVIEAS DG+EFG  DAQLDLS+G PRFY+MH+ENRPLKFS+I
Sbjct: 7   VTLKAIEATPSTFKDYGQVIEASPDGQEFGSHDAQLDLSQGTPRFYIMHIENRPLKFSSI 66

Query: 73  THHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRV 132
           THHASVTQCLGSIGGHVWYLGVAK SI+DS E +      IV+S  GH YVPPAIEDV+V
Sbjct: 67  THHASVTQCLGSIGGHVWYLGVAKSSIVDSNEIKDGTSKKIVQSPSGHSYVPPAIEDVQV 126

Query: 133 FKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVI 172
           FK+AG KFLKLNRGTWHAGPLFKA  +DFYNLELSNTNVI
Sbjct: 127 FKVAGSKFLKLNRGTWHAGPLFKAAAIDFYNLELSNTNVI 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|129594025|gb|ABO31123.1| putative ureidoglycolate hydrolase [Phaseolus vulgaris]

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 121/165 (73%), Positives = 140/165 (84%)

Query: 8   EEVVTVKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPL 67
           E    V L+A+EAT  +FK+YGQVIEAS DG+EFG  DAQLDL+ G PRFY+MH+ENRPL
Sbjct: 2   ETTKVVTLKAMEATPLTFKDYGQVIEASPDGQEFGLHDAQLDLTHGTPRFYIMHIENRPL 61

Query: 68  KFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAI 127
           KFS+ITHHA+VTQCLGS+GGH WYLGVAK SI+DS E + D G  IV+S CGH YVPP I
Sbjct: 62  KFSSITHHANVTQCLGSVGGHAWYLGVAKSSIVDSNEIKDDTGKKIVQSRCGHSYVPPDI 121

Query: 128 EDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVI 172
           ++V+VFK+AG KFLKL+RGTWHAGPLFKAD MDFYNLELSNTNVI
Sbjct: 122 DEVQVFKVAGSKFLKLDRGTWHAGPLFKADAMDFYNLELSNTNVI 166

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226490954|ref|NP_001145559.1| uncharacterized protein LOC100279019 [Zea mays] gi|223975745|gb|ACN32060.1| unknown [Zea mays] gi|414879855|tpg|DAA56986.1| TPA: hypothetical protein ZEAMMB73_252388 [Zea mays]

 Score =  261 bits (668), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 120/172 (69%), Positives = 144/172 (83%), Gaps = 1/172 (0%)

Query: 2   VKMEKQEEVVTVKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMH 61
            +ME+++E   VKLRA+EAT ESF  +GQVI AS DG+EFGP DAQLDLSRGIPRFY+M 
Sbjct: 54  AQMERRQEAKVVKLRAVEATPESFASFGQVIGASPDGDEFGPHDAQLDLSRGIPRFYIMR 113

Query: 62  LENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILD-STETEGDMGTNIVRSHCGH 120
           L+NRPLKFSTITHHASVTQCLGS+GG  WYLGVAKPSI+D ++E  G  G   ++S  GH
Sbjct: 114 LQNRPLKFSTITHHASVTQCLGSVGGQDWYLGVAKPSIVDGASEQSGPEGRKFLQSAAGH 173

Query: 121 FYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVI 172
           +Y+PP   +V VF+++GPKFLKLN+GTWHAGPLFKAD +DFYNLELSNTNV+
Sbjct: 174 YYLPPDPAEVCVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVV 225

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195643516|gb|ACG41226.1| hypothetical protein [Zea mays] gi|195658017|gb|ACG48476.1| hypothetical protein [Zea mays]

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 120/170 (70%), Positives = 143/170 (84%), Gaps = 1/170 (0%)

Query: 4   MEKQEEVVTVKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLE 63
           ME+++E   VKLRA+EAT ESF  +GQVI AS DG+EFGP DAQLDLSRGIPRFY+M L+
Sbjct: 1   MERRQEAKVVKLRAVEATPESFASFGQVIGASPDGDEFGPHDAQLDLSRGIPRFYIMRLQ 60

Query: 64  NRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILD-STETEGDMGTNIVRSHCGHFY 122
           NRPLKFSTITHHASVTQCLGS+GG  WYLGVAKPSI+D ++E  G  G   ++S  GH+Y
Sbjct: 61  NRPLKFSTITHHASVTQCLGSVGGQDWYLGVAKPSIVDGASEQSGPEGRKFLQSAAGHYY 120

Query: 123 VPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVI 172
           +PP   +V VF+++GPKFLKLN+GTWHAGPLFKAD +DFYNLELSNTNV+
Sbjct: 121 LPPDPAEVCVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVV 170

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723905|ref|NP_001237295.1| uncharacterized protein LOC100306085 [Glycine max] gi|255627489|gb|ACU14089.1| unknown [Glycine max]

 Score =  254 bits (649), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 119/158 (75%), Positives = 134/158 (84%)

Query: 13  VKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTI 72
           V L+AIEAT  +FKE+GQV+EAS DG+EFGP DAQLDLS+G PRFY++ LE  PLKFS+I
Sbjct: 9   VTLKAIEATPSTFKEFGQVVEASRDGQEFGPHDAQLDLSQGTPRFYIIKLEKCPLKFSSI 68

Query: 73  THHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRV 132
           THHA VTQCLGSIGGHVWYLGVAK S++DS E + D G  IV+S  GH YVPPAIEDV+V
Sbjct: 69  THHAIVTQCLGSIGGHVWYLGVAKSSVVDSNEIKDDTGKKIVQSRSGHSYVPPAIEDVQV 128

Query: 133 FKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTN 170
           FKI+G KFLK NRGTWHAGPLFKA  MDFYNLELSNTN
Sbjct: 129 FKISGSKFLKPNRGTWHAGPLFKAAAMDFYNLELSNTN 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242054885|ref|XP_002456588.1| hypothetical protein SORBIDRAFT_03g038920 [Sorghum bicolor] gi|241928563|gb|EES01708.1| hypothetical protein SORBIDRAFT_03g038920 [Sorghum bicolor]

 Score =  251 bits (640), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 117/172 (68%), Positives = 142/172 (82%), Gaps = 1/172 (0%)

Query: 2   VKMEKQEEVVTVKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMH 61
            +ME++ EV  VKLRA+EAT ESF  +GQVI AS DG+EFGP DAQLDLS GIPRFY+M 
Sbjct: 89  AQMERKGEVKVVKLRAVEATPESFAPFGQVITASPDGDEFGPHDAQLDLSSGIPRFYIMR 148

Query: 62  LENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILD-STETEGDMGTNIVRSHCGH 120
           L++RPL+FSTITHHASVTQCLG+IGG  WYLGVAKPSI+D ++E  G  G  +++S  GH
Sbjct: 149 LQDRPLEFSTITHHASVTQCLGAIGGQDWYLGVAKPSIVDGASEQSGPEGRKLLQSAAGH 208

Query: 121 FYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVI 172
            Y+PP   +V VF+++G KFLKLN+GTWHAGPLFKAD +DFYNLELSNTNV+
Sbjct: 209 CYLPPDPAEVCVFRVSGSKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVV 260

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
TAIR|locus:2039190	192	AT2G35820 [Arabidopsis thalian	0.833	0.833	0.654	7.5e-57
TAIR|locus:2039205	199	AT2G35810 "AT2G35810" [Arabido	0.880	0.849	0.598	2.4e-53

TAIR|locus:2039190 AT2G35820 [Arabidopsis thaliana (taxid:3702)]

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 106/162 (65%), Positives = 129/162 (79%)

Query:    11 VTVKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFS 70
             V VKL  IEAT E+F +YGQVIEAS DG  FGP DAQLDLSRGIPRFY+M + + P  FS
Sbjct:     6 VEVKLIPIEATPENFADYGQVIEASRDGAGFGPNDAQLDLSRGIPRFYIMRIRDTPFDFS 65

Query:    71 TITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDV 130
              +THHASVTQCLGSIGGHVWYLGVAKP++++  + +G M  + ++S  GH Y PPA+E++
Sbjct:    66 VLTHHASVTQCLGSIGGHVWYLGVAKPTLIEDGD-DGKM-VDKLKSRSGHLYAPPAVEEI 123

Query:   131 RVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVI 172
             RVF+++GPKF+KLN GTWH GPLF    MDFYNLELSNTN +
Sbjct:   124 RVFRVSGPKFIKLNHGTWHVGPLFSDSYMDFYNLELSNTNAV 165

GO:0000256 "allantoin catabolic process" evidence=IEA

GO:0004848 "ureidoglycolate hydrolase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2039205 AT2G35810 "AT2G35810" [Arabidopsis thaliana (taxid:3702)]

 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 103/172 (59%), Positives = 128/172 (74%)

Query:     2 VKMEKQEEVVTVKLRAIEATAESFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMH 61
             VK    +  V V L  IEAT E+F EYGQVIEAS DG  +GP DAQLDLS+GIPR Y++ 
Sbjct:    11 VKSTMAKSPVEVNLIPIEATPETFAEYGQVIEASRDGAGYGPNDAQLDLSKGIPRLYILR 70

Query:    62 LENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHF 121
             L+  PL F  ITHHA VTQCLGSIGG +WY+GVAKPS+++  +    + T  V++  GH 
Sbjct:    71 LKETPLGFFKITHHAKVTQCLGSIGGDIWYMGVAKPSLIEDDDDGRRVDT--VKAKSGHL 128

Query:   122 YVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADD-MDFYNLELSNTNVI 172
             Y+PP +E++RVF+ +GPKF+KL+RGTWHAGPLF     MDFYNLELSNTNV+
Sbjct:   129 YIPPEVEEIRVFRFSGPKFVKLHRGTWHAGPLFSGSSIMDFYNLELSNTNVV 180


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.423    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      192       192   0.00096  110 3  11 22  0.44    32
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  169 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.64u 0.07s 16.71t   Elapsed:  00:00:01
  Total cpu time:  16.64u 0.07s 16.71t   Elapsed:  00:00:01
  Start:  Fri May 10 23:40:18 2013   End:  Fri May 10 23:40:19 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00018265001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (192 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00024786001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (114 aa)			•						0.502
	GSVIVG00000626001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (260 aa)			•						0.502
	GSVIVG00024783001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (133 aa)			•						0.500
	GSVIVG00007992001	SubName- Full=Chromosome undetermined scaffold_1173, whole genome shotgun sequence; Flags- Frag [...] (120 aa)			•						0.500
	GSVIVG00034387001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (146 aa)			•						0.492
	GSVIVG00006111001	SubName- Full=Chromosome chr14 scaffold_164, whole genome shotgun sequence; (332 aa)			•						0.490
	GSVIVG00021037001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (452 aa)			•						0.477
	GSVIVG00011540001	SubName- Full=Chromosome undetermined scaffold_314, whole genome shotgun sequence; (338 aa)			•						0.468
	GSVIVG00011351001	SubName- Full=Chromosome undetermined scaffold_2548, whole genome shotgun sequence; (212 aa)			•						0.463
	GSVIVG00018092001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (239 aa)			•						0.457

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	192
PF04115	165	Ureidogly_hydro: Ureidoglycolate hydrolase ; Inter	100.0
PRK03606	162	ureidoglycolate hydrolase; Provisional	100.0
COG3194	168	DAL3 Ureidoglycolate hydrolase [Nucleotide transpo	100.0
PRK13395	171	ureidoglycolate hydrolase; Provisional	100.0
COG3822	225	ABC-type sugar transport system, auxiliary compone	82.39
PF05523	131	FdtA: WxcM-like, C-terminal ; InterPro: IPR008894	80.81

>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3

Probab=100.00  E-value=2.9e-43  Score=287.81  Aligned_cols=145  Identities=26%  Similarity=0.347  Sum_probs=106.4

Q ss_pred             eeeEEeeeCChhhccCCcceEeeCCC-------CC-CCCCCCceeecC---CCeeeEEEEeecC--CCceeeeeecCCCC
Q 029502           12 TVKLRAIEATAESFKEYGQVIEASAD-------GE-EFGPQDAQLDLS---RGIPRFYVMHLEN--RPLKFSTITHHASV   78 (192)
Q Consensus        12 ~~~l~a~pLT~eaFAPfG~VI~~~~~-------~~-~~~~~~a~~~~~---~G~~~f~i~~~~~--~p~~v~~lERHp~t   78 (192)
                      |++|+++|||+|||||||+||+..+.       |. ...++.+.++.+   +|.+++++++++.  .|++|++|||||++
T Consensus         1 m~~i~~~pLT~eaFaPyG~vi~~~~~~~~~~n~g~a~r~~~~~~~~~~~~~~~~~~~si~~~~~~~~p~~v~~lERHp~t   80 (165)
T PF04115_consen    1 MKTIKAEPLTPEAFAPYGDVIELDDAEPFPINQGTAERFHDLAPLDFSGGEGGRPGISIFRAQPRELPFEVSMLERHPLT   80 (165)
T ss_dssp             -EEEEEEE--HHHHTTTEEEE-STT--EEEETTTTEEEEEEEEEE-BSS-TTSCEEEEEEEEEBE-SSEEEEEEEE-TTB
T ss_pred             CceeeeeECCHHHhccceeEEccCCCCceeccCCcceEEeccceeecccCCCCcEEEEEEEeeccCCccccceeccCCCe
Confidence            57899999999999999999998421       11 112345666664   4678999998754  58999999999999


Q ss_pred             eeeeeeccCCe-EEEEEeCCCCCCCCcccCCCCcceeeccCCCcCCCCCcCCeEEEEEeCCeeEEecCCCcCCCcccCCC
Q 029502           79 TQCLGSIGGHV-WYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKAD  157 (192)
Q Consensus        79 SQaFiPl~~~~-~lvvVA~~~~~~~~e~~~~~~~~~~~~~~g~~~~~Pdl~~lrAFi~~~gQgV~y~~GtWHa~pl~~~~  157 (192)
                      ||+|+||++.+ |+||||+++.                        .||++++|||+++++|||+|++||||++++..++
T Consensus        81 sQ~fiPl~~~~~~lvvVA~~~~------------------------~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~~  136 (165)
T PF04115_consen   81 SQAFIPLDGSPWYLVVVAPDDD------------------------GPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLDE  136 (165)
T ss_dssp             -EEEEESBS---EEEEEEESSS------------------------S-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESSS
T ss_pred             eEEEEECCCCccEEEEEcCCCC------------------------CCCccceEEEEEcCCEEEEECCCceeCCccccCC
Confidence            99999999999 9999998652                        7999999999999999999999999997777788


Q ss_pred             cccEEEEEecCCccccccccccc
Q 029502          158 DMDFYNLELSNTNVISSLFLSLS  180 (192)
Q Consensus       158 ~~dF~vle~~~t~~~d~~~~~~~  180 (192)
                      +++|+++++.+++..||+...++
T Consensus       137 ~~~f~vv~~~~~~~~dce~~~~~  159 (165)
T PF04115_consen  137 PADFLVVDRIDGPGDDCEEVELD  159 (165)
T ss_dssp             EEEEEEEEEESSTS-T-EEEEEE
T ss_pred             cceEEEEeCCcCCCCCcEEEeCC
Confidence            99999999999988888877654

5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.

>PRK03606 ureidoglycolate hydrolase; Provisional

Probab=100.00  E-value=6.8e-42  Score=280.26  Aligned_cols=142  Identities=21%  Similarity=0.269  Sum_probs=116.3

Q ss_pred             eeEEeeeCChhhccCCcceEeeCCC-------CC-CCCCCCceeecC--CCeeeEEEEeecCC--CceeeeeecCCCCee
Q 029502           13 VKLRAIEATAESFKEYGQVIEASAD-------GE-EFGPQDAQLDLS--RGIPRFYVMHLENR--PLKFSTITHHASVTQ   80 (192)
Q Consensus        13 ~~l~a~pLT~eaFAPfG~VI~~~~~-------~~-~~~~~~a~~~~~--~G~~~f~i~~~~~~--p~~v~~lERHp~tSQ   80 (192)
                      ++|+++|||+|||||||+||+..+.       |. ...++.|+++..  +|+++++++|++.+  |+++++|||||++||
T Consensus         2 ~~l~~~pLT~eaFaPfG~VI~~~~~~~~~iN~G~~~r~~~la~~~~~~~~g~~~isifr~~~~~~p~~~~~mERHp~~sQ   81 (162)
T PRK03606          2 RTLQIEPLTKEAFAPFGDVIETDGADFFHINNGTTERYHDLARVEVAGEGGRALISIFRAQPRALPLEIRMLERHPLGSQ   81 (162)
T ss_pred             CceeeeECCHHHcCccccEEccCCCCceeccCcceeEeecceeccccCCCCceEEEEEeCcccCCCcceeeEEeCCCceE
Confidence            4699999999999999999997632       11 123567888764  45889999999765  899999999999999


Q ss_pred             eeeeccCCeEEEEEeCCCCCCCCcccCCCCcceeeccCCCcCCCCCcCCeEEEEEeCCeeEEecCCCcCCCcccCCCccc
Q 029502           81 CLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMD  160 (192)
Q Consensus        81 aFiPl~~~~~lvvVA~~~~~~~~e~~~~~~~~~~~~~~g~~~~~Pdl~~lrAFi~~~gQgV~y~~GtWHa~pl~~~~~~d  160 (192)
                      ||+||++.+|+|+||+++.                         +|++++|||+++|+|||+|++||||++++.++++.|
T Consensus        82 afiPl~~~~~lvvVA~~~~-------------------------~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l~~~~d  136 (162)
T PRK03606         82 AFIPLNGRPFLVVVAPDGD-------------------------GDPGTPRAFVTNGRQGVNYHRGVWHHPLLALGEVSD  136 (162)
T ss_pred             EEEECCCCEEEEEEeCCCC-------------------------CCccceEEEEecCCcEEEeCCCcccccccccCCCce
Confidence            9999999999999998764                         266899999999999999999999964444477899


Q ss_pred             EEEEEecCCccccccccccc
Q 029502          161 FYNLELSNTNVISSLFLSLS  180 (192)
Q Consensus       161 F~vle~~~t~~~d~~~~~~~  180 (192)
                      |+|+++. +.+.||+.+.++
T Consensus       137 F~vvdr~-g~g~ncee~~~~  155 (162)
T PRK03606        137 FLVVDRG-GPGDNLEEHFFP  155 (162)
T ss_pred             EEEEeCC-cCCCCceEEECC
Confidence            9999974 456666665553

>COG3194 DAL3 Ureidoglycolate hydrolase [Nucleotide transport and metabolism]

Probab=100.00  E-value=2.5e-41  Score=275.71  Aligned_cols=131  Identities=23%  Similarity=0.322  Sum_probs=108.9

Q ss_pred             eeeEEeeeCChhhccCCcceEeeCCCCC--------CCCCCCceeecCC-C-eeeEEEEeecC--CCceeeeeecCCCCe
Q 029502           12 TVKLRAIEATAESFKEYGQVIEASADGE--------EFGPQDAQLDLSR-G-IPRFYVMHLEN--RPLKFSTITHHASVT   79 (192)
Q Consensus        12 ~~~l~a~pLT~eaFAPfG~VI~~~~~~~--------~~~~~~a~~~~~~-G-~~~f~i~~~~~--~p~~v~~lERHp~tS   79 (192)
                      |++|+++|||+|||||||+||+..+...        ...++.++++.++ + ++.+.++|.++  .|++|++|||||++|
T Consensus         1 m~~l~~~pLT~EaFapfGdVIe~~~~~~~~iN~G~~~ryh~la~vE~~g~~~r~linifr~~p~~~p~~I~~lERHP~gS   80 (168)
T COG3194           1 MKTLTARPLTKEAFAPFGDVIETDQAKMFHINGGTAERYHDLARVEAAGEDARTLINIFRAQPAVHPLTISMLERHPLGS   80 (168)
T ss_pred             CceeeeeccchhhhccccccccccccceeeecCchhhhhhhhhhhhhcCCCcceEEEEeecccCcCCceeeEEeecCCcc
Confidence            4689999999999999999999764211        1224555555432 2 56788888765  489999999999999


Q ss_pred             eeeeeccCCeEEEEEeCCCCCCCCcccCCCCcceeeccCCCcCCCCCcCCeEEEEEeCCeeEEecCCCcCCCcccC-CCc
Q 029502           80 QCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFK-ADD  158 (192)
Q Consensus        80 QaFiPl~~~~~lvvVA~~~~~~~~e~~~~~~~~~~~~~~g~~~~~Pdl~~lrAFi~~~gQgV~y~~GtWHa~pl~~-~~~  158 (192)
                      |+|+||++.+||||||+.+.                        .||++++|||++.|+|||||++||||| ||+. ++.
T Consensus        81 QaFiPl~~~~fLVVVA~~~~------------------------~pd~~~~rAF~a~g~QgVnY~rnvWH~-pl~~l~~~  135 (168)
T COG3194          81 QAFIPLSGRPFLVVVAPDGG------------------------KPDPSTPRAFIANGRQGVNYHRNVWHH-PLTPLGKV  135 (168)
T ss_pred             eeeeecCCCeEEEEEEcCCC------------------------CCCCCceeEEEecCccceeeccceecc-ceeccccc
Confidence            99999999999999998752                        799999999999999999999999997 5555 788


Q ss_pred             ccEEEEEec
Q 029502          159 MDFYNLELS  167 (192)
Q Consensus       159 ~dF~vle~~  167 (192)
                      .||+++++.
T Consensus       136 ~dF~vvdr~  144 (168)
T COG3194         136 TDFLVVDRE  144 (168)
T ss_pred             ceEEEEEec
Confidence            999999987

>PRK13395 ureidoglycolate hydrolase; Provisional

Probab=100.00  E-value=1.2e-40  Score=275.06  Aligned_cols=142  Identities=22%  Similarity=0.281  Sum_probs=111.6

Q ss_pred             eeEEeeeCChhhccCCcceEeeCCCC-------C-CCCCCCceeecC--CCeeeEEEEeecCC--CceeeeeecCCCCee
Q 029502           13 VKLRAIEATAESFKEYGQVIEASADG-------E-EFGPQDAQLDLS--RGIPRFYVMHLENR--PLKFSTITHHASVTQ   80 (192)
Q Consensus        13 ~~l~a~pLT~eaFAPfG~VI~~~~~~-------~-~~~~~~a~~~~~--~G~~~f~i~~~~~~--p~~v~~lERHp~tSQ   80 (192)
                      .+|+++|||+|||||||+||+..+..       . ...++.++++..  +|.+++++||++++  |++|++|||||++||
T Consensus         2 ~~i~~~pLT~eaFaPfG~VI~~~~~~~~~iN~G~~~r~h~la~~d~~~~~g~~~isifr~~p~~~p~~i~~mERHp~~sQ   81 (171)
T PRK13395          2 KTLRAERLTREAFAPFGDVIELDGARHFPINGGTTERFHDLATIDVTGDGGRPLVSLFRAQPRALPVAITMMERHPLGSQ   81 (171)
T ss_pred             CceeeeECCHHHcCccceeEecCCCCcceecCcceEEeccceeeeccCCCCceEEEEEeccccCCCcceeeEEECCCceE
Confidence            46999999999999999999976321       1 123567888764  45889999999765  899999999999999


Q ss_pred             eeeeccC-CeEEEEEeCCCCCCCCcccCCCCcceeeccCCCcCCCCCcCCeEEEEEeCCeeEEecCCCcCCCcccCCCcc
Q 029502           81 CLGSIGG-HVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDM  159 (192)
Q Consensus        81 aFiPl~~-~~~lvvVA~~~~~~~~e~~~~~~~~~~~~~~g~~~~~Pdl~~lrAFi~~~gQgV~y~~GtWHa~pl~~~~~~  159 (192)
                      ||+||++ .+|+||||+++                         .++++++|||+++|+|||||++|||||+++.++++.
T Consensus        82 afiPl~~~~~~lvVvap~~-------------------------~~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~~~~  136 (171)
T PRK13395         82 AFIPLAAVSRYAVVVAPAG-------------------------EFRPDEMRAFLAEGWQGVNYAKGVWHHPLLALDAVS  136 (171)
T ss_pred             EEEECCCCCCEEEEEccCC-------------------------CCCCCceEEEEecCCcEEEeCCCcccccccccCCCc
Confidence            9999999 55656555432                         123457999999999999999999998555557789


Q ss_pred             cEEEEEecCCccccccccccc
Q 029502          160 DFYNLELSNTNVISSLFLSLS  180 (192)
Q Consensus       160 dF~vle~~~t~~~d~~~~~~~  180 (192)
                      ||+|+++. +.+.||+.+.++
T Consensus       137 dF~vvdr~-g~~~nc~e~~~~  156 (171)
T PRK13395        137 DFVVVDRG-GPQPNCDEIPLD  156 (171)
T ss_pred             cEEEEeCC-cCCCCceEEECC
Confidence            99999854 456677666654

>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]

Probab=82.39  E-value=5.1  Score=34.70  Aligned_cols=102  Identities=16%  Similarity=0.139  Sum_probs=59.2

Q ss_pred             CceeeeeecCCCCeeeeeeccCCeEEEEEeCCCCCCCCcccCCCCcceeeccCCCcCCCCCcCCeEEEEEeCCeeEEecC
Q 029502           66 PLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNR  145 (192)
Q Consensus        66 p~~v~~lERHp~tSQaFiPl~~~~~lvvVA~~~~~~~~e~~~~~~~~~~~~~~g~~~~~Pdl~~lrAFi~~~gQgV~y~~  145 (192)
                      +-.++.|-||+.-..-.+--++..+++=.-..+.+ .++++.++  -.|+.- |.   .-....=--.+..|||-|++-+
T Consensus        95 ~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~-~~~~~ks~--vtv~~d-g~---r~~~~ag~~lkL~PGesitL~P  167 (225)
T COG3822          95 PGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLV-EGQDEKSD--VTVPVD-GC---RQTHTAGSQLKLSPGESITLPP  167 (225)
T ss_pred             cCCcCcccccccchhhhhhcCCceEEEEEeccccc-cCcCCCCC--eEecCC-Cc---EEEeccceeEEECCCCcEecCC
Confidence            44677899999888887777777655544433321 11211111  111111 10   1001111224689999999999


Q ss_pred             CCcCCCcccCCCcccEEEEEecCCcccccccc
Q 029502          146 GTWHAGPLFKADDMDFYNLELSNTNVISSLFL  177 (192)
Q Consensus       146 GtWHa~pl~~~~~~dF~vle~~~t~~~d~~~~  177 (192)
                      |+||+   +-.+..+-++-|.|.+|-.+|...
T Consensus       168 g~~Hs---Fwae~g~vlvgEvSsvndD~hDn~  196 (225)
T COG3822         168 GLYHS---FWAEEGGVLVGEVSSVNDDLHDNI  196 (225)
T ss_pred             Cceee---eeecCCcEEEEEEeeccCccccch
Confidence            99997   444445666778888877777644

>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []

Probab=80.81  E-value=3.3  Score=32.55  Aligned_cols=52  Identities=21%  Similarity=0.268  Sum_probs=29.7

Q ss_pred             eeeeeecCCCCeeeeeeccCCeEEEEEeCCCCCCCCcccCCCCcceeeccCCCcCCCCCcCCeEEEE-EeCCeeEEecCC
Q 029502           68 KFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFK-IAGPKFLKLNRG  146 (192)
Q Consensus        68 ~v~~lERHp~tSQaFiPl~~~~~lvvVA~~~~~~~~e~~~~~~~~~~~~~~g~~~~~Pdl~~lrAFi-~~~gQgV~y~~G  146 (192)
                      .++-.=+|...+|.|+.+.|+ +.|.+- ++.                            +. +-|+ -.+.+|+.+-+|
T Consensus        44 ~~RG~H~Hk~~~~~~~~l~Gs-~~v~~~-d~~----------------------------~~-~~~~L~~~~~~L~Ippg   92 (131)
T PF05523_consen   44 VIRGWHAHKKTTQWFIVLSGS-FKVVLD-DGR----------------------------EE-EEFILDEPNKGLYIPPG   92 (131)
T ss_dssp             --EEEEEESS--EEEEEEES--EEEEEE--SS-----------------------------E-EEEEE--TTEEEEE-TT
T ss_pred             CcccccccccccEEEEEEeCE-EEEEEe-cCC----------------------------Cc-EEEEECCCCeEEEECCc
Confidence            347788999999999999875 344422 211                            12 4444 455589999999


Q ss_pred             CcCC
Q 029502          147 TWHA  150 (192)
Q Consensus       147 tWHa  150 (192)
                      +||.
T Consensus        93 ~w~~   96 (131)
T PF05523_consen   93 VWHG   96 (131)
T ss_dssp             -EEE
T ss_pred             hhhH
Confidence            9996

It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	192
2bdr_A	175	Ureidoglycolate hydrolase; all beta protein, struc	3e-17
1xsq_A	168	Ureidoglycolate hydrolase; northeast structural ge	3e-15

>2bdr_A Ureidoglycolate hydrolase; all beta protein, structural genomics, PSI, protein structur initiative, northeast structural genomics consortium; 1.60A {Pseudomonas putida} SCOP: b.82.1.14 Length = 175

 Score = 74.4 bits (182), Expect = 3e-17
 Identities = 30/169 (17%), Positives = 53/169 (31%), Gaps = 36/169 (21%)

Query: 14  KLRAIEATAESFKEYGQVIEASADGEEFGPQ--------DAQLDLS----RGIPRFYVMH 61
            L     T E+F ++G VIE                    A ++ +    + I   +   
Sbjct: 3   TLMIEPLTKEAFAQFGDVIETDGSDHFMINNGSTMRFHKLATVETAEPEDKAIISIFRAD 62

Query: 62  LENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHF 121
            ++ PL    +  H   +Q    + G+ + + VA                          
Sbjct: 63  AQDMPLTVRMLERHPLGSQAFIPLLGNPFLIVVAPVGD---------------------- 100

Query: 122 YVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTN 170
              P    VR F+  G + +  +RG WH   L      DF  ++ S + 
Sbjct: 101 --APVSGLVRAFRSNGRQGVNYHRGVWHHPVLTIEKRDDFLVVDRSGSG 147

>1xsq_A Ureidoglycolate hydrolase; northeast structural genomics consortium, NESG, structural genomics, protein structure initiative, PSI, ET81, X-RAY; 1.60A {Escherichia coli} SCOP: b.82.1.14 PDB: 1xsr_A 1yqc_A Length = 168

 Score = 69.1 bits (168), Expect = 3e-15
 Identities = 29/169 (17%), Positives = 51/169 (30%), Gaps = 35/169 (20%)

Query: 13  VKLRAIEATAESFKEYGQVIEASADGEEFGPQD--------AQLDLSRG---IPRFYVMH 61
           +KL+ +  + E+F  YG VIE                    A +++      +       
Sbjct: 1   MKLQVLPLSQEAFSAYGDVIETQQRDFFHINNGLVERYHDLALVEILEQDCTLISINRAQ 60

Query: 62  LENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHF 121
             N PL    +  H   TQ    + G V+ + VA                          
Sbjct: 61  PANLPLTIHELERHPLGTQAFIPMKGEVFVVVVALGDD---------------------- 98

Query: 122 YVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTN 170
              P +  +R F   G + +  +R  WH          DF  ++   ++
Sbjct: 99  --KPDLSTLRAFITNGEQGVNYHRNVWHHPLFAWQRVTDFLTIDRGGSD 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	192
2bdr_A	175	Ureidoglycolate hydrolase; all beta protein, struc	100.0
1xsq_A	168	Ureidoglycolate hydrolase; northeast structural ge	100.0
3d0j_A	140	Uncharacterized protein CA_C3497; beta-barrel, str	95.0
2pa7_A	141	DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug	90.59
3ejk_A	174	DTDP sugar isomerase; YP_390184.1, structural geno	80.2

>2bdr_A Ureidoglycolate hydrolase; all beta protein, structural genomics, PSI, protein structur initiative, northeast structural genomics consortium; 1.60A {Pseudomonas putida} SCOP: b.82.1.14

Probab=100.00  E-value=1.8e-43  Score=291.33  Aligned_cols=142  Identities=20%  Similarity=0.282  Sum_probs=116.3

Q ss_pred             eeeEEeeeCChhhccCCcceEeeCCCC--------CCCCCCCceeecCCC--eeeEEEEeecCC--CceeeeeecCCCCe
Q 029502           12 TVKLRAIEATAESFKEYGQVIEASADG--------EEFGPQDAQLDLSRG--IPRFYVMHLENR--PLKFSTITHHASVT   79 (192)
Q Consensus        12 ~~~l~a~pLT~eaFAPfG~VI~~~~~~--------~~~~~~~a~~~~~~G--~~~f~i~~~~~~--p~~v~~lERHp~tS   79 (192)
                      |++|+++|||+|||||||+||+..+..        +.+.+++|+++++++  ++.+++||++.+  |++|++|||||++|
T Consensus         1 m~~l~~~pLT~eaFaPfG~VI~~~~~~~~~~N~G~~~r~~~~a~ld~~~~~~r~~isifr~~~r~~p~~v~~lERHp~~s   80 (175)
T 2bdr_A            1 MRTLMIEPLTKEAFAQFGDVIETDGSDHFMINNGSTMRFHKLATVETAEPEDKAIISIFRADAQDMPLTVRMLERHPLGS   80 (175)
T ss_dssp             CEECCEEECCHHHHTTTEEEECSTTCCCEEEGGGTEEEEEEEEEECBSSTTCEEEEEEEEEECCCSSEEECEEEECTTBC
T ss_pred             CCceeeeECCHHHhCCcceEEccCCCCcccccCcceeEecccceEEecCCCcccEEEEEEccccCCCceeeEEeeCCCCc
Confidence            356999999999999999999976321        112345788888665  557999999554  99999999999999


Q ss_pred             eeeeeccCCeEEEEEeCCCCCCCCcccCCCCcceeeccCCCcCCCCCcCCeEEEEEeCCeeEEecCCCcCCCcccC-CCc
Q 029502           80 QCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFK-ADD  158 (192)
Q Consensus        80 QaFiPl~~~~~lvvVA~~~~~~~~e~~~~~~~~~~~~~~g~~~~~Pdl~~lrAFi~~~gQgV~y~~GtWHa~pl~~-~~~  158 (192)
                      |||+||++.+|+||||+++                        +.||++++|||+++|+|||||++||||+ |++. ++.
T Consensus        81 QafiPl~~~~~lVvVAp~~------------------------~~Pd~~~lrAF~~~ggqgV~y~~GtWH~-pl~~l~~~  135 (175)
T 2bdr_A           81 QAFIPLLGNPFLIVVAPVG------------------------DAPVSGLVRAFRSNGRQGVNYHRGVWHH-PVLTIEKR  135 (175)
T ss_dssp             EEEEESSCCCEEEEEECSS------------------------SSCCGGGCEEEEECSSCEEEECTTCEEC-SCEESSSE
T ss_pred             eEEEECCCCEEEEEEeCCC------------------------CCCCccceEEEEeCCCeEEEeCCCceec-ccccCCCC
Confidence            9999999999999999643                        2799999999999999999999999996 6665 678


Q ss_pred             ccEEEEEecCCcccccccccc
Q 029502          159 MDFYNLELSNTNVISSLFLSL  179 (192)
Q Consensus       159 ~dF~vle~~~t~~~d~~~~~~  179 (192)
                      +||+|+++++. ..||+.+.+
T Consensus       136 ~dF~vvdr~g~-~~dc~e~~~  155 (175)
T 2bdr_A          136 DDFLVVDRSGS-GNNCDEHYF  155 (175)
T ss_dssp             EEEEEEEEECS-SCCCEEEEC
T ss_pred             ceEEEEEcCCC-CCCCEEEEC
Confidence            99999999853 355554444

>1xsq_A Ureidoglycolate hydrolase; northeast structural genomics consortium, NESG, structural genomics, protein structure initiative, PSI, ET81, X-RAY; 1.60A {Escherichia coli} SCOP: b.82.1.14 PDB: 1xsr_A 1yqc_A

Probab=100.00  E-value=1.7e-43  Score=289.68  Aligned_cols=138  Identities=24%  Similarity=0.379  Sum_probs=115.4

Q ss_pred             eEEeeeCChhhccCCcceEeeCCCC--------CCCCCCCceeecCCC-eeeEEEEeecCC--CceeeeeecCCCCeeee
Q 029502           14 KLRAIEATAESFKEYGQVIEASADG--------EEFGPQDAQLDLSRG-IPRFYVMHLENR--PLKFSTITHHASVTQCL   82 (192)
Q Consensus        14 ~l~a~pLT~eaFAPfG~VI~~~~~~--------~~~~~~~a~~~~~~G-~~~f~i~~~~~~--p~~v~~lERHp~tSQaF   82 (192)
                      +|+++|||+|||||||+||+..+..        ..+.++.|++++++| ++++++||++++  |++|++|||||++||||
T Consensus         2 ~l~~~pLT~eaFapfG~vI~~~~~~~~~~N~G~~~r~~~~a~ld~~~~~~~~i~ifr~~~r~~p~~v~~lERHp~~sQaf   81 (168)
T 1xsq_A            2 KLQVLPLSQEAFSAYGDVIETQQRDFFHINNGLVERYHDLALVEILEQDCTLISINRAQPANLPLTIHELERHPLGTQAF   81 (168)
T ss_dssp             EEEEEECCHHHHTTTEEEECCTTCCCEEC----CEEEEEEEEECBSSCSCEEEEEEEECBCCSSCEEEEEEECTTBCEEE
T ss_pred             ceeeeECCHHHcCCceeEEccCCCCcccccCCcceEeccceeEecCCCCceEEEEEEecCCCCCceeeEEeeCCCCceEE
Confidence            6899999999999999999985321        112246788888765 889999999988  99999999999999999


Q ss_pred             eeccCCeEEEEEeCCCCCCCCcccCCCCcceeeccCCCcCCCCCcCCeEEEEEeCCeeEEecCCCcCCCcccC-CCcccE
Q 029502           83 GSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFK-ADDMDF  161 (192)
Q Consensus        83 iPl~~~~~lvvVA~~~~~~~~e~~~~~~~~~~~~~~g~~~~~Pdl~~lrAFi~~~gQgV~y~~GtWHa~pl~~-~~~~dF  161 (192)
                      +||++.+|+||||+++                        +.||++++|||+++|+|||||++||||+ |+++ ++.+||
T Consensus        82 iPl~~~~~lVvVA~~~------------------------~~Pd~~~lrAF~~~ggqgV~y~~GtWH~-pl~~l~~~~~F  136 (168)
T 1xsq_A           82 IPMKGEVFVVVVALGD------------------------DKPDLSTLRAFITNGEQGVNYHRNVWHH-PLFAWQRVTDF  136 (168)
T ss_dssp             EESBCCCCEEEEEECS------------------------SSCEEEEEEEEECCSSCEEEECTTCEEC-CCCBSSSCEEE
T ss_pred             EECCCCEEEEEEeCCC------------------------CCCChhheEEEEecCCeEEEeCCCceec-ccccCCCcceE
Confidence            9999999999999663                        2799999999999999999999999998 6555 678999


Q ss_pred             EEEEecCCccccccccc
Q 029502          162 YNLELSNTNVISSLFLS  178 (192)
Q Consensus       162 ~vle~~~t~~~d~~~~~  178 (192)
                      +|+++.+.+  ||+.+.
T Consensus       137 ~vvdr~g~~--dc~e~~  151 (168)
T 1xsq_A          137 LTIDRGGSD--NCDVES  151 (168)
T ss_dssp             EEEECC--C--CCEEEE
T ss_pred             EEEeccCCC--CcEEEE
Confidence            999886443  554443

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}

Probab=95.00  E-value=0.036  Score=43.92  Aligned_cols=80  Identities=14%  Similarity=0.101  Sum_probs=59.9

Q ss_pred             CceeeeeecCCCCeeeeeeccCCeEEEEEeCCCCCCCCcccCCCCcceeeccCCCcCCCCCcCCeEEEEEeCCeeEEecC
Q 029502           66 PLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNR  145 (192)
Q Consensus        66 p~~v~~lERHp~tSQaFiPl~~~~~lvvVA~~~~~~~~e~~~~~~~~~~~~~~g~~~~~Pdl~~lrAFi~~~gQgV~y~~  145 (192)
                      .-.++.|++|+-+-..|+-+.+. ..+..+..+.                          +....++....+|+..+..+
T Consensus        38 ~~~i~~~h~H~~tDE~Fivl~G~-l~i~~rd~~~--------------------------~~~~d~~V~l~~Ge~yvVPk   90 (140)
T 3d0j_A           38 IEGIAHLEIHHSTDEQFILSAGK-AILITAEKEN--------------------------DKFNIELTLMEKGKVYNVPA   90 (140)
T ss_dssp             TTTCCEEEEESSCCEEEEEEESC-EEEEEEEEET--------------------------TEEEEEEEECCTTCCEEECT
T ss_pred             cccCHhhccCCCCCeEEEEEecE-EEEEEecCcC--------------------------CCCccceEEecCCCEEEeCC
Confidence            44689999999999999999876 3555553211                          12456889999999999999


Q ss_pred             CCcCCCcccCCCcccEEEEEecCCccccc
Q 029502          146 GTWHAGPLFKADDMDFYNLELSNTNVISS  174 (192)
Q Consensus       146 GtWHa~pl~~~~~~dF~vle~~~t~~~d~  174 (192)
                      ||||- |.+ ...+..+.+|-++|.-.+.
T Consensus        91 GveH~-p~a-~~e~~vLLiEp~nTGd~~s  117 (140)
T 3d0j_A           91 ECWFY-SIT-QKDTKMMYVQDSNCSMDNS  117 (140)
T ss_dssp             TCEEE-EEE-CTTCEEEEEEESCCCGGGE
T ss_pred             CccCc-ccC-CCceEEEEEEeCCCCCCCC
Confidence            99994 655 4457889999986644443

>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*

Probab=90.59  E-value=0.46  Score=37.04  Aligned_cols=69  Identities=13%  Similarity=0.067  Sum_probs=44.6

Q ss_pred             eeeeeecCCCCeeeeeeccCCeEEEEEeCCCCCCCCcccCCCCcceeeccCCCcCCCCCcCCeEEEEEeCCeeEEecCCC
Q 029502           68 KFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGT  147 (192)
Q Consensus        68 ~v~~lERHp~tSQaFiPl~~~~~lvvVA~~~~~~~~e~~~~~~~~~~~~~~g~~~~~Pdl~~lrAFi~~~gQgV~y~~Gt  147 (192)
                      .++--=||....|.|+.+.+. +-|++ .++                         ..   .-+.++-.+.+|+.+-+|+
T Consensus        46 ~~RG~H~Hk~~~q~li~l~Gs-~~v~l-dDg-------------------------~~---~~~~~L~~~~~gL~Ippgv   95 (141)
T 2pa7_A           46 EPRGFHAHKKLEQVLVCLNGS-CRVIL-DDG-------------------------NI---IQEITLDSPAVGLYVGPAV   95 (141)
T ss_dssp             CCEEEEEESSCCEEEEEEESC-EEEEE-ECS-------------------------SC---EEEEEECCTTEEEEECTTC
T ss_pred             CEECcCcCCCceEEEEEEccE-EEEEE-ECC-------------------------cE---EEEEEECCCCcEEEeCCCE
Confidence            456677899999999999875 34444 111                         11   2344566788999999999


Q ss_pred             cCCCcccCCCcccEEEEEecCC
Q 029502          148 WHAGPLFKADDMDFYNLELSNT  169 (192)
Q Consensus       148 WHa~pl~~~~~~dF~vle~~~t  169 (192)
                      ||. ....+..+  +.+++++.
T Consensus        96 Wh~-~~~~s~~a--vllvlas~  114 (141)
T 2pa7_A           96 WHE-MHDFSSDC--VMMVLASD  114 (141)
T ss_dssp             EEE-EECCCTTC--EEEEEESS
T ss_pred             EEE-EEEcCCCe--EEEEECCC
Confidence            995 44444323  44455433

>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}

Probab=80.20  E-value=7.3  Score=31.20  Aligned_cols=74  Identities=14%  Similarity=0.149  Sum_probs=52.1

Q ss_pred             CceeeeeecCCCCeeeeeeccCCeEEEEEeCCCCCCCCcccCCCCcceeeccCCCcCCCCCcCCeEEEEEe---CCeeEE
Q 029502           66 PLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIA---GPKFLK  142 (192)
Q Consensus        66 p~~v~~lERHp~tSQaFiPl~~~~~lvvVA~~~~~~~~e~~~~~~~~~~~~~~g~~~~~Pdl~~lrAFi~~---~gQgV~  142 (192)
                      +=.++-+=+|....|.++-+.++-+.++|=.- .                       +.|.-.....|...   ..+++-
T Consensus        62 ~GvlRG~H~h~~q~klv~~v~G~v~dv~vD~R-~-----------------------~SpTfg~~~~v~Ls~~~n~~~L~  117 (174)
T 3ejk_A           62 PRRVKAWKRHSLMTQLFAVPVGCIHVVLYDGR-E-----------------------KSPTSGRLAQVTLGRPDNYRLLR  117 (174)
T ss_dssp             BTCEEEEEEESSCCEEEEEEESEEEEEEECCC-T-----------------------TCTTTTCEEEEEEETTTBCEEEE
T ss_pred             CCCEECcEecCCCceEEEEEeeEEEEEEEeCC-C-----------------------CCCCCCeEEEEEECCccCceEEE
Confidence            34678888888788888888776544443211 1                       25777789999998   679999


Q ss_pred             ecCCCcCCCcccCCC-cccEEEE
Q 029502          143 LNRGTWHAGPLFKAD-DMDFYNL  164 (192)
Q Consensus       143 y~~GtWHa~pl~~~~-~~dF~vl  164 (192)
                      +-+|+||. -....+ .+.++++
T Consensus       118 IP~G~aHg-f~~lsd~~av~ly~  139 (174)
T 3ejk_A          118 IPPQVWYG-FAATGDTPALVANC  139 (174)
T ss_dssp             ECTTCEEE-EEECTTSCEEEEEE
T ss_pred             eCCCcEEE-EEEccCCCEEEEEE
Confidence            99999995 555544 4555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	192
d2bdra1	166	b.82.1.14 (A:1-166) Ureidoglycolate hydrolase AllA	1e-20
d1xsqa_	160	b.82.1.14 (A:) Ureidoglycolate hydrolase AllA {Shi	1e-19

>d2bdra1 b.82.1.14 (A:1-166) Ureidoglycolate hydrolase AllA {Pseudomonas putida [TaxId: 303]} Length = 166

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Ureidoglycolate hydrolase AllA
domain: Ureidoglycolate hydrolase AllA
species: Pseudomonas putida [TaxId: 303]

 Score = 81.9 bits (202), Expect = 1e-20
 Identities = 29/168 (17%), Positives = 50/168 (29%), Gaps = 36/168 (21%)

Query: 14  KLRAIEATAESFKEYGQVIEASADGEEFGPQ------------DAQLDLSRGIPRFYVMH 61
            L     T E+F ++G VIE                       +      + I   +   
Sbjct: 3   TLMIEPLTKEAFAQFGDVIETDGSDHFMINNGSTMRFHKLATVETAEPEDKAIISIFRAD 62

Query: 62  LENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHF 121
            ++ PL    +  H   +Q    + G+ + + VA                          
Sbjct: 63  AQDMPLTVRMLERHPLGSQAFIPLLGNPFLIVVAPVGD---------------------- 100

Query: 122 YVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNT 169
              P    VR F+  G + +  +RG WH   L      DF  ++ S +
Sbjct: 101 --APVSGLVRAFRSNGRQGVNYHRGVWHHPVLTIEKRDDFLVVDRSGS 146

>d1xsqa_ b.82.1.14 (A:) Ureidoglycolate hydrolase AllA {Shigella flexneri [TaxId: 623]} Length = 160

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Ureidoglycolate hydrolase AllA
domain: Ureidoglycolate hydrolase AllA
species: Shigella flexneri [TaxId: 623]

 Score = 79.2 bits (195), Expect = 1e-19
 Identities = 30/160 (18%), Positives = 48/160 (30%), Gaps = 35/160 (21%)

Query: 13  VKLRAIEATAESFKEYGQVIEASADG---------EEFGPQDAQLDLSRGIPRFYVMHLE 63
           +KL+ +  + E+F  YG VIE              E +        L +      +   +
Sbjct: 1   MKLQVLPLSQEAFSAYGDVIETQQRDFFHINNGLVERYHDLALVEILEQDCTLISINRAQ 60

Query: 64  --NRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHF 121
             N PL    +  H   TQ    + G V+ + VA                          
Sbjct: 61  PANLPLTIHELERHPLGTQAFIPMKGEVFVVVVALGDD---------------------- 98

Query: 122 YVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDF 161
              P +  +R F   G + +  +R  WH          DF
Sbjct: 99  --KPDLSTLRAFITNGEQGVNYHRNVWHHPLFAWQRVTDF 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	192
d2bdra1	166	Ureidoglycolate hydrolase AllA {Pseudomonas putida	100.0
d1xsqa_	160	Ureidoglycolate hydrolase AllA {Shigella flexneri	100.0

>d2bdra1 b.82.1.14 (A:1-166) Ureidoglycolate hydrolase AllA {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Ureidoglycolate hydrolase AllA
domain: Ureidoglycolate hydrolase AllA
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=3.5e-42  Score=278.77  Aligned_cols=143  Identities=20%  Similarity=0.233  Sum_probs=114.4

Q ss_pred             eeeEEeeeCChhhccCCcceEeeCCCCCC--------CCCCCceeec--CCCeeeEEEEeecC--CCceeeeeecCCCCe
Q 029502           12 TVKLRAIEATAESFKEYGQVIEASADGEE--------FGPQDAQLDL--SRGIPRFYVMHLEN--RPLKFSTITHHASVT   79 (192)
Q Consensus        12 ~~~l~a~pLT~eaFAPfG~VI~~~~~~~~--------~~~~~a~~~~--~~G~~~f~i~~~~~--~p~~v~~lERHp~tS   79 (192)
                      |++|+++|||+|||||||+||+..+....        ..++.+.++.  .+|.+.+++++++.  +|+++++|||||++|
T Consensus         1 M~~i~~epLT~eaFapfG~vi~~~~~~~~~iN~G~~~r~~~~~~~d~~~~~~~~~~~~~~~~~~~~p~~i~~lErHp~~s   80 (166)
T d2bdra1           1 MRTLMIEPLTKEAFAQFGDVIETDGSDHFMINNGSTMRFHKLATVETAEPEDKAIISIFRADAQDMPLTVRMLERHPLGS   80 (166)
T ss_dssp             CEECCEEECCHHHHTTTEEEECSTTCCCEEEGGGTEEEEEEEEEECBSSTTCEEEEEEEEEECCCSSEEECEEEECTTBC
T ss_pred             CCceeceECCHHHhcccccEEecCCCCceeecCcccEEecccccccccCCCCcEEEEEEEeccccCccceeeeeecCCCc
Confidence            56899999999999999999997542110        1133455665  35678888888754  488999999999999


Q ss_pred             eeeeeccCCeEEEEEeCCCCCCCCcccCCCCcceeeccCCCcCCCCCcCCeEEEEEeCCeeEEecCCCcCCCcccCCCcc
Q 029502           80 QCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDM  159 (192)
Q Consensus        80 QaFiPl~~~~~lvvVA~~~~~~~~e~~~~~~~~~~~~~~g~~~~~Pdl~~lrAFi~~~gQgV~y~~GtWHa~pl~~~~~~  159 (192)
                      |+|+||++.+|+||||+++.                        .||++++|||+++|+|||+|++||||++++++++.+
T Consensus        81 Q~FiPl~~~~~lvvVA~~~~------------------------~Pd~~~~rAF~~~~~qgV~~~~G~WH~pl~~l~~~~  136 (166)
T d2bdra1          81 QAFIPLLGNPFLIVVAPVGD------------------------APVSGLVRAFRSNGRQGVNYHRGVWHHPVLTIEKRD  136 (166)
T ss_dssp             EEEEESSCCCEEEEEECSSS------------------------SCCGGGCEEEEECSSCEEEECTTCEECSCEESSSEE
T ss_pred             eEEEecCCCcEEEEEeCCcc------------------------CCChhheEEEEeCCCcEEEeCCCceeCCccccCCCc
Confidence            99999999999999997653                        699999999999999999999999998555567789


Q ss_pred             cEEEEEecCCcccccccccc
Q 029502          160 DFYNLELSNTNVISSLFLSL  179 (192)
Q Consensus       160 dF~vle~~~t~~~d~~~~~~  179 (192)
                      ||+|+++.+ ...||+.+.+
T Consensus       137 ~F~vidr~~-~~~n~~~~~f  155 (166)
T d2bdra1         137 DFLVVDRSG-SGNNCDEHYF  155 (166)
T ss_dssp             EEEEEEEEC-SSCCCEEEEC
T ss_pred             eEEEEeCCC-CCCCeeEEEC
Confidence            999999764 3445554443

>d1xsqa_ b.82.1.14 (A:) Ureidoglycolate hydrolase AllA {Shigella flexneri [TaxId: 623]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Ureidoglycolate hydrolase AllA
domain: Ureidoglycolate hydrolase AllA
species: Shigella flexneri [TaxId: 623]

Probab=100.00  E-value=4.1e-42  Score=276.74  Aligned_cols=142  Identities=20%  Similarity=0.300  Sum_probs=114.0

Q ss_pred             eeEEeeeCChhhccCCcceEeeCCCCC-------C-CCCCCceeecC-CCeeeEEEEeecC--CCceeeeeecCCCCeee
Q 029502           13 VKLRAIEATAESFKEYGQVIEASADGE-------E-FGPQDAQLDLS-RGIPRFYVMHLEN--RPLKFSTITHHASVTQC   81 (192)
Q Consensus        13 ~~l~a~pLT~eaFAPfG~VI~~~~~~~-------~-~~~~~a~~~~~-~G~~~f~i~~~~~--~p~~v~~lERHp~tSQa   81 (192)
                      ++|+++|||+|+|||||+||+..++..       . +.++.+.++.+ +|.+++++++++.  .|+++++|||||++||+
T Consensus         1 ~~l~~~pLT~e~FapfG~vI~~~~~~~~~in~G~~~~~~~~a~~~~~~~g~~~~~i~~~~~~~~p~~i~~lErHp~~sQ~   80 (160)
T d1xsqa_           1 MKLQVLPLSQEAFSAYGDVIETQQRDFFHINNGLVERYHDLALVEILEQDCTLISINRAQPANLPLTIHELERHPLGTQA   80 (160)
T ss_dssp             CEEEEEECCHHHHTTTEEEECCTTCCCEEC----CEEEEEEEEECBSSCSCEEEEEEEECBCCSSCEEEEEEECTTBCEE
T ss_pred             CceeeEECCHHHcCccceEEecCCCCceeccCccceEEcchhhcccccCCCceEeEeeecccccccceeeeecCCCceeE
Confidence            378999999999999999999764321       1 12334666664 5677888888754  58999999999999999


Q ss_pred             eeeccCCeEEEEEeCCCCCCCCcccCCCCcceeeccCCCcCCCCCcCCeEEEEEeCCeeEEecCCCcCCCcccCCCcccE
Q 029502           82 LGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDF  161 (192)
Q Consensus        82 FiPl~~~~~lvvVA~~~~~~~~e~~~~~~~~~~~~~~g~~~~~Pdl~~lrAFi~~~gQgV~y~~GtWHa~pl~~~~~~dF  161 (192)
                      |+||++.+|+|+||+++.                        .||++++|||+++|+|||+|++||||+++++.++.+||
T Consensus        81 FiPl~~~~~lvvVA~~~~------------------------~Pd~~~iraF~~~~~qgV~~~~g~WH~pl~~l~~~~dF  136 (160)
T d1xsqa_          81 FIPMKGEVFVVVVALGDD------------------------KPDLSTLRAFITNGEQGVNYHRNVWHHPLFAWQRVTDF  136 (160)
T ss_dssp             EEESBCCCCEEEEEECSS------------------------SCEEEEEEEEECCSSCEEEECTTCEECCCCBSSSCEEE
T ss_pred             EEEcCCCcEEEEEECCCC------------------------CCCccceEEEEeCCCcEEEEcCCeEEcccccCCCCceE
Confidence            999999999999998753                        68999999999999999999999999755555778999


Q ss_pred             EEEEecCCccccccccccc
Q 029502          162 YNLELSNTNVISSLFLSLS  180 (192)
Q Consensus       162 ~vle~~~t~~~d~~~~~~~  180 (192)
                      +++++.+.+  |++...++
T Consensus       137 ~vidr~~~~--d~~~~~~~  153 (160)
T d1xsqa_         137 LTIDRGGSD--NCDVESIP  153 (160)
T ss_dssp             EEEECC--C--CCEEEEEE
T ss_pred             EEEEccCCC--CceEEEcC
Confidence            999987543  66555443