Citrus Sinensis ID: 029503

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--

MNLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSNGQWGLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTYPAQKIELSKLKL

ccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHcccccccHHHHHHHHHcccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccccccccccccc

ccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcccEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHEEEHHcccccHHHHHHHHHccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccHcccccccEEcccccc

MNLLEEAKKdidsyskggpisFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYgsngqwglfekqfgrtdaqepdpegrvpqwEKATVQEMKDKfsaiglgprQLAVMSAFLGPDQAATEALLAtdkdvspwvqkyqrsretvsqtDYEVDLITTFTKLSSLGQQINYEAYTYPAQKIELSKLKL

MNLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSNGQWGLFEKQFGRTDaqepdpegrvpqwEKATVQEMKDKFSAIGLGPRQLAVMSAFLGPDQAATEALLatdkdvspwvqkyqrsretvsqtdyEVDLITTFTKLSSLGQQINYEaytypaqkielsklkl

MNLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSNGQWGLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTYPAQKIELSKLKL

******************PISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSNGQWGLFEKQF****************************FSAIGLGPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTYPAQ*********

******A******YSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSNGQWGLFEKQF****************WEKATVQEMKDKFSAIGLGPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTYPAQKIELSKLKL

MNLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSNGQWGLFEKQFGR************PQWEKATVQEMKDKFSAIGLGPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTYPAQKIELSKLKL

MNLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSNGQWGLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTYPAQKIELSKLKL

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

MNLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSNGQWGLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTYPAQKIELSKLKL

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		192	2.2.26 [Sep-21-2011]
P82281		349	Thylakoid lumenal 29 kDa	yes	no	1.0	0.550	0.822	6e-92
Q9THX6		345	Thylakoid lumenal 29 kDa	N/A	no	1.0	0.556	0.812	8e-91

>sp\|P82281\|TL29_ARATH Thylakoid lumenal 29 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=TL29 PE=1 SV=2	Back alignment and function desciption

 Score =  336 bits (861), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 158/192 (82%), Positives = 173/192 (90%)

Query: 1   MNLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAY 60
           ++L+EE KK+IDS SKGGPIS+AD+IQ A QSAVK T+LASAIRKCGGNEEKG LLYTAY
Sbjct: 158 LSLIEEVKKEIDSISKGGPISYADIIQLAGQSAVKFTYLASAIRKCGGNEEKGNLLYTAY 217

Query: 61  GSNGQWGLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSAFLG 120
           GS GQWGLF++ FGR+DA E DPEGRVPQW KATVQEMKDKF A+GLGPRQLAVMSAFLG
Sbjct: 218 GSAGQWGLFDRNFGRSDATEADPEGRVPQWGKATVQEMKDKFIAVGLGPRQLAVMSAFLG 277

Query: 121 PDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTY 180
           PDQAATE LLATD  V+PWVQKYQRSRETVSQTDYEVDLIT FTKLS LGQQIN+EAYTY
Sbjct: 278 PDQAATEQLLATDPQVAPWVQKYQRSRETVSQTDYEVDLITAFTKLSCLGQQINFEAYTY 337

Query: 181 PAQKIELSKLKL 192
           P ++I LSKLKL
Sbjct: 338 PVERINLSKLKL 349

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp\|Q9THX6\|TL29_SOLLC Thylakoid lumenal 29 kDa protein, chloroplastic OS=Solanum lycopersicum GN=CLEB3J9 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		192
380863110		341	APX [Dimocarpus longan]	1.0	0.563	0.901	1e-99
224082097		332	predicted protein [Populus trichocarpa]	1.0	0.578	0.885	1e-97
302141995		344	unnamed protein product [Vitis vinifera]	1.0	0.558	0.869	2e-97
449436992		368	PREDICTED: thylakoid lumenal 29 kDa prot	1.0	0.521	0.843	2e-93
357489751		353	hypothetical protein MTR_5g064610 [Medic	1.0	0.543	0.822	5e-92
357489753		221	hypothetical protein MTR_5g064610 [Medic	1.0	0.868	0.822	8e-92
217073228		353	unknown [Medicago truncatula]	1.0	0.543	0.817	1e-91
312281719		348	unnamed protein product [Thellungiella h	1.0	0.551	0.822	2e-90
15236678		349	ascorbate peroxidase 4 [Arabidopsis thal	1.0	0.550	0.822	3e-90
297808959		337	hypothetical protein ARALYDRAFT_489709 [	1.0	0.569	0.822	2e-89

>gi\|380863110\|gb\|AFF18848.1\| APX [Dimocarpus longan]	Back alignment and taxonomy information

 Score =  367 bits (942), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 173/192 (90%), Positives = 184/192 (95%)

Query: 1   MNLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAY 60
           ++ LEE KK+IDSYSKGGPI++ADLIQYAAQSA K TFLASAIRKCGGNEEKGRLLYTAY
Sbjct: 150 LDSLEEVKKEIDSYSKGGPIAYADLIQYAAQSAAKATFLASAIRKCGGNEEKGRLLYTAY 209

Query: 61  GSNGQWGLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSAFLG 120
           GSNGQWGLF++QFGRTDA EPDPEGR+PQWEKATVQEMKDKF+AIG GPRQLAVMSAFLG
Sbjct: 210 GSNGQWGLFDRQFGRTDALEPDPEGRIPQWEKATVQEMKDKFTAIGFGPRQLAVMSAFLG 269

Query: 121 PDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTY 180
           PDQAATEALLATDKDVSPWV+KYQRSRETVSQTDYEVDLITT TKLSSLGQQINYEAYTY
Sbjct: 270 PDQAATEALLATDKDVSPWVEKYQRSRETVSQTDYEVDLITTLTKLSSLGQQINYEAYTY 329

Query: 181 PAQKIELSKLKL 192
           P +KIELSKLKL
Sbjct: 330 PVRKIELSKLKL 341

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224082097\|ref\|XP_002306565.1\| predicted protein [Populus trichocarpa] gi\|222856014\|gb\|EEE93561.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|302141995\|emb\|CBI19198.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449436992\|ref\|XP_004136276.1\| PREDICTED: thylakoid lumenal 29 kDa protein, chloroplastic-like [Cucumis sativus] gi\|449496987\|ref\|XP_004160282.1\| PREDICTED: thylakoid lumenal 29 kDa protein, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357489751\|ref\|XP_003615163.1\| hypothetical protein MTR_5g064610 [Medicago truncatula] gi\|355516498\|gb\|AES98121.1\| hypothetical protein MTR_5g064610 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357489753\|ref\|XP_003615164.1\| hypothetical protein MTR_5g064610 [Medicago truncatula] gi\|355516499\|gb\|AES98122.1\| hypothetical protein MTR_5g064610 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|217073228\|gb\|ACJ84973.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|312281719\|dbj\|BAJ33725.1\| unnamed protein product [Thellungiella halophila]	Back alignment and taxonomy information

>gi|15236678|ref|NP_192640.1| ascorbate peroxidase 4 [Arabidopsis thaliana] gi|12644689|sp|P82281.2|TL29_ARATH RecName: Full=Thylakoid lumenal 29 kDa protein, chloroplastic; Short=TL29; AltName: Full=AtAPx07; AltName: Full=P29; AltName: Full=Probable L-ascorbate peroxidase 4; Flags: Precursor gi|13899079|gb|AAK48961.1|AF370534_1 Putative L-ascorbate peroxidase [Arabidopsis thaliana] gi|7267543|emb|CAB78025.1| putative protein [Arabidopsis thaliana] gi|18377504|gb|AAL66918.1| putative L-ascorbate peroxidase [Arabidopsis thaliana] gi|332657311|gb|AEE82711.1| ascorbate peroxidase 4 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297808959\|ref\|XP_002872363.1\| hypothetical protein ARALYDRAFT_489709 [Arabidopsis lyrata subsp. lyrata] gi\|297318200\|gb\|EFH48622.1\| hypothetical protein ARALYDRAFT_489709 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		192
TAIR\|locus:2122333		349	TL29 "AT4G09010" [Arabidopsis	1.0	0.550	0.822	1.7e-82
TAIR\|locus:2074914		251	APX2 "ascorbate peroxidase 2"	0.218	0.167	0.418	0.00047

TAIR\|locus:2122333 TL29 "AT4G09010" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 827 (296.2 bits), Expect = 1.7e-82, P = 1.7e-82
 Identities = 158/192 (82%), Positives = 173/192 (90%)

Query:     1 MNLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAY 60
             ++L+EE KK+IDS SKGGPIS+AD+IQ A QSAVK T+LASAIRKCGGNEEKG LLYTAY
Sbjct:   158 LSLIEEVKKEIDSISKGGPISYADIIQLAGQSAVKFTYLASAIRKCGGNEEKGNLLYTAY 217

Query:    61 GSNGQWGLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSAFLG 120
             GS GQWGLF++ FGR+DA E DPEGRVPQW KATVQEMKDKF A+GLGPRQLAVMSAFLG
Sbjct:   218 GSAGQWGLFDRNFGRSDATEADPEGRVPQWGKATVQEMKDKFIAVGLGPRQLAVMSAFLG 277

Query:   121 PDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTY 180
             PDQAATE LLATD  V+PWVQKYQRSRETVSQTDYEVDLIT FTKLS LGQQIN+EAYTY
Sbjct:   278 PDQAATEQLLATDPQVAPWVQKYQRSRETVSQTDYEVDLITAFTKLSCLGQQINFEAYTY 337

Query:   181 PAQKIELSKLKL 192
             P ++I LSKLKL
Sbjct:   338 PVERINLSKLKL 349

GO:0004601 "peroxidase activity" evidence=ISS

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016688 "L-ascorbate peroxidase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0019760 "glucosinolate metabolic process" evidence=RCA

TAIR\|locus:2074914 APX2 "ascorbate peroxidase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P82281	TL29_ARATH	1, ., -, ., -, ., -	0.8229	1.0	0.5501	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.V.4773.1	hypothetical protein (319 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XVI.1375.1	L-gulono-1,4-lactone dehydrogenase (EC-1.3.2.3) (553 aa)		•	0.899
	estExt_fgenesh4_pm.C_280146	SubName- Full=Putative uncharacterized protein; (434 aa)		•	0.899
	estExt_fgenesh4_pg.C_LG_I2142	hypothetical protein (478 aa)		•	0.899
	estExt_Genewise1_v1.C_LG_III1082	SubName- Full=Putative uncharacterized protein; (144 aa)	•		0.404

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		192
cd00314		255	cd00314, plant_peroxidase_like, Heme-dependent per	2e-16
pfam00141		180	pfam00141, peroxidase, Peroxidase	3e-15
PLN02879		251	PLN02879, PLN02879, L-ascorbate peroxidase	4e-04
cd00691		253	cd00691, ascorbate_peroxidase, Ascorbate peroxidas	0.002

>gnl\|CDD\|173823 cd00314, plant_peroxidase_like, Heme-dependent peroxidases similar to plant peroxidases	Back alignment and domain information

 Score = 74.5 bits (183), Expect = 2e-16
 Identities = 48/221 (21%), Positives = 69/221 (31%), Gaps = 61/221 (27%)

Query: 1   MNLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAY 60
           +  LE  K   D    G P+S ADLI  A   AV++TF                      
Sbjct: 64  LRALEPIKSAYD---GGNPVSRADLIALAGAVAVESTF---------------------- 98

Query: 61  GSNGQWGLFEKQFGRTDAQE-----PDPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVM 115
              G   L   +FGR DA E     PDPEG +P  E ++  E++DKF  +GL P +L  +
Sbjct: 99  ---GGGPLIPFRFGRLDATEPDLGVPDPEGLLPN-ETSSATELRDKFKRMGLSPSELVAL 154

Query: 116 SA----FLG-----PDQAATEALLATD-------------KDVSPWVQKYQRS----RET 149
           SA      G             L  +                   W              
Sbjct: 155 SAGAHTLGGKNHGDLLNYEGSGLWTSTPFTFDNAYFKNLLDMNWEWRVGSPDPDGVKGPG 214

Query: 150 VSQTDYEVDL-ITTFTKLSSLGQQINYEAYTYPAQKIELSK 189
           +  +DY +     T   +             +    I++  
Sbjct: 215 LLPSDYALLSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255

Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised of classic extracellular plant peroxidases, like horseradish peroxidase. Length = 255

>gnl\|CDD\|215745 pfam00141, peroxidase, Peroxidase	Back alignment and domain information

>gnl\|CDD\|178467 PLN02879, PLN02879, L-ascorbate peroxidase	Back alignment and domain information

>gnl\|CDD\|173825 cd00691, ascorbate_peroxidase, Ascorbate peroxidases and cytochrome C peroxidases	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		192
PLN03030		324	cationic peroxidase; Provisional	100.0
cd00693		298	secretory_peroxidase Horseradish peroxidase and re	100.0
PLN02879		251	L-ascorbate peroxidase	100.0
PLN02608		289	L-ascorbate peroxidase	100.0
cd00691		253	ascorbate_peroxidase Ascorbate peroxidases and cyt	100.0
PLN02364		250	L-ascorbate peroxidase 1	100.0
cd00692		328	ligninase Ligninase and other manganese-dependent	100.0
cd00314		255	plant_peroxidase_like Heme-dependent peroxidases s	99.96
cd00649		409	catalase_peroxidase_1 N-terminal catalytic domain	99.96
PF00141		230	peroxidase: Peroxidase; InterPro: IPR002016 Peroxi	99.96
TIGR00198		716	cat_per_HPI catalase/peroxidase HPI. Note that the	99.95
PRK15061		726	catalase/hydroperoxidase HPI(I); Provisional	99.93
cd08200		297	catalase_peroxidase_2 C-terminal non-catalytic dom	99.92
TIGR00198		716	cat_per_HPI catalase/peroxidase HPI. Note that the	99.88
PRK15061		726	catalase/hydroperoxidase HPI(I); Provisional	99.87
cd08201		264	plant_peroxidase_like_1 Uncharacterized family of	99.8
COG0376		730	KatG Catalase (peroxidase I) [Inorganic ion transp	99.76
COG0376		730	KatG Catalase (peroxidase I) [Inorganic ion transp	99.24

>PLN03030 cationic peroxidase; Provisional	Back alignment and domain information

Probab=100.00  E-value=1.2e-37  Score=277.21  Aligned_cols=146  Identities=22%  Similarity=0.391  Sum_probs=129.2

Q ss_pred             ChHHHHHHHHHhhcCCCCCccHHHHHHHhHHHHHHHhhHHHHHHHhCCCcccccceecccCCCCCccccccccCCCCCCC
Q 029503            1 MNLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSNGQWGLFEKQFGRTDAQE   80 (192)
Q Consensus         1 l~~id~iK~~~e~~c~~~~VS~ADlialAa~~Av~~~f~~~~i~~~GGp~i~~~~~~~~~g~~~~~~~~~v~~GR~Da~~   80 (192)
                      +|+||.||+++|+.| |++|||||||+||+|+||         ..+|||.                  |+|++||+|+++
T Consensus        96 f~~i~~iK~~~e~~C-Pg~VSCADilalAarDaV---------~~~gGP~------------------~~v~~GRrDg~~  147 (324)
T PLN03030         96 YDVIDDAKTQLEAAC-PGVVSCADILALAARDSV---------VLTNGLT------------------WPVPTGRRDGRV  147 (324)
T ss_pred             HHHHHHHHHHHHhhC-CCcccHHHHHHHHhhccc---------cccCCCc------------------eeeeccccCCCC
Confidence            479999999999999 899999999999999998         8899998                  899999999987


Q ss_pred             C--CCCCCCCCCcCcCHHHHHHHHHHCCCCcccceeeec-----------C-------C------C--------------
Q 029503           81 P--DPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSA-----------F-------L------G--------------  120 (192)
Q Consensus        81 ~--~~~g~lP~~~~~s~~~l~~~F~~~Gl~~~elVaLsG-----------F-------~------g--------------  120 (192)
                      +  ++.++||. |+.++++|++.|+++||+.+|||+|||           |       .      +              
T Consensus       148 s~~~~~~~LP~-p~~~~~~l~~~F~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~  226 (324)
T PLN03030        148 SLASDASNLPG-FTDSIDVQKQKFAAKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQAL  226 (324)
T ss_pred             CCcccccCCcC-CCCCHHHHHHHHHHcCCCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhcc
Confidence            6  44458999 899999999999999999999999999           2       0      0              


Q ss_pred             --------------------------------CCCchhhHhhccCCCcHHHHHHHhhccCccchhhhHHHHHHHHHHHHc
Q 029503          121 --------------------------------PDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSS  168 (192)
Q Consensus       121 --------------------------------p~~l~sD~~L~~d~~t~~~v~~ya~~~~~~~~~~f~~~Fa~Am~KL~~  168 (192)
                                                      .++|+|||+|++|++|+++|++||.|+.. .++.|+++|++||+|||+
T Consensus       227 Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~-~~~~F~~~Fa~AmvKMg~  305 (324)
T PLN03030        227 CPQNGDGSRRIALDTGSSNRFDASFFSNLKNGRGILESDQKLWTDASTRTFVQRFLGVRGL-AGLNFNVEFGRSMVKMSN  305 (324)
T ss_pred             CCCCCCCCccccCCCCCCcccccHHHHHHHhcCCCcCCchHhhcCccHHHHHHHHhccccc-chhhhHHHHHHHHHHHcc
Confidence                                            06899999999999999999999988630 124599999999999999


Q ss_pred             CCCCCCCC
Q 029503          169 LGQQINYE  176 (192)
Q Consensus       169 lg~~~~~~  176 (192)
                      +||.++.+
T Consensus       306 i~VlTG~~  313 (324)
T PLN03030        306 IGVKTGTN  313 (324)
T ss_pred             CCCCCCCC
Confidence            99988753

>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases	Back alignment and domain information

>PLN02879 L-ascorbate peroxidase	Back alignment and domain information

>PLN02608 L-ascorbate peroxidase	Back alignment and domain information

>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases	Back alignment and domain information

>PLN02364 L-ascorbate peroxidase 1	Back alignment and domain information

>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases	Back alignment and domain information

>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases	Back alignment and domain information

>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases	Back alignment and domain information

>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions	Back alignment and domain information

>TIGR00198 cat_per_HPI catalase/peroxidase HPI	Back alignment and domain information

>PRK15061 catalase/hydroperoxidase HPI(I); Provisional	Back alignment and domain information

>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases	Back alignment and domain information

>TIGR00198 cat_per_HPI catalase/peroxidase HPI	Back alignment and domain information

>PRK15061 catalase/hydroperoxidase HPI(I); Provisional	Back alignment and domain information

>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins	Back alignment and domain information

>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		192
3rrw_A		268	Crystal Structure Of The Tl29 Protein From Arabidop		2e-90

>pdb|3RRW|A Chain A, Crystal Structure Of The Tl29 Protein From Arabidopsis Thaliana Length = 268

Back alignment and structure

Iteration: 1

Score = 327 bits (839), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 156/192 (81%), Positives = 171/192 (89%) Query: 1 MNLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAY 60 ++L+EE KK+IDS SKGGPIS+AD+IQ A QSAVK T+LASAIRKCGGNEEKG LLYTAY Sbjct: 77 LSLIEEVKKEIDSISKGGPISYADIIQLAGQSAVKFTYLASAIRKCGGNEEKGNLLYTAY 136 Query: 61 GSNGQWGLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSAFLG 120 GS GQWGLF++ FGR+DA E DPEGRVPQW KATVQE KDKF A+GLGPRQLAV SAFLG Sbjct: 137 GSAGQWGLFDRNFGRSDATEADPEGRVPQWGKATVQEXKDKFIAVGLGPRQLAVXSAFLG 196 Query: 121 PDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTY 180 PDQAATE LLATD V+PWVQKYQRSRETVSQTDYEVDLIT FTKLS LGQQIN+EAYTY Sbjct: 197 PDQAATEQLLATDPQVAPWVQKYQRSRETVSQTDYEVDLITAFTKLSCLGQQINFEAYTY 256 Query: 181 PAQKIELSKLKL 192 P ++I LSKLKL Sbjct: 257 PVERINLSKLKL 268

PyMOL of 3rrw

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		192
3rrw_A		268	Thylakoid lumenal 29 kDa protein, chloroplastic; c	1e-71
3fmu_A		331	VersatIle peroxidase VPL2; class II (fungal) perox	5e-09
2e39_A		344	Peroxidase; heme protein, coordination geometry of	2e-08
3q3u_A		338	Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A	2e-08
1llp_A		343	LIP4.15, lignin peroxidase; heme protein, glyco pr	2e-06
2vcn_A		261	Ascorbate peroxidase; INH, APX, isoniazid, oxidore	3e-05
3m5q_A		357	Manganese peroxidase 1; heme, Mn(II)-binding site,	2e-04
3riv_A		271	Ascorbate peroxidase; alpha helical bundle, heme p	4e-04
3e2o_A		294	CCP, cytochrome C peroxidase; cytochrome C peroxid	5e-04
1iyn_A		295	Chloroplastic ascorbate peroxidase; hydrogen perox	8e-04

>3rrw_A Thylakoid lumenal 29 kDa protein, chloroplastic; chloroplast thylakoid lumen, plant protein; 2.50A {Arabidopsis thaliana} Length = 268	Back alignment and structure

 Score =  217 bits (553), Expect = 1e-71
 Identities = 158/191 (82%), Positives = 172/191 (90%)

Query: 2   NLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYG 61
           +L+EE KK+IDS SKGGPIS+AD+IQ A QSAVK T+LASAIRKCGGNEEKG LLYTAYG
Sbjct: 78  SLIEEVKKEIDSISKGGPISYADIIQLAGQSAVKFTYLASAIRKCGGNEEKGNLLYTAYG 137

Query: 62  SNGQWGLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSAFLGP 121
           S GQWGLF++ FGR+DA E DPEGRVPQW KATVQEMKDKF A+GLGPRQLAVMSAFLGP
Sbjct: 138 SAGQWGLFDRNFGRSDATEADPEGRVPQWGKATVQEMKDKFIAVGLGPRQLAVMSAFLGP 197

Query: 122 DQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTYP 181
           DQAATE LLATD  V+PWVQKYQRSRETVSQTDYEVDLIT FTKLS LGQQIN+EAYTYP
Sbjct: 198 DQAATEQLLATDPQVAPWVQKYQRSRETVSQTDYEVDLITAFTKLSCLGQQINFEAYTYP 257

Query: 182 AQKIELSKLKL 192
            ++I LSKLKL
Sbjct: 258 VERINLSKLKL 268

PyMOL of 3rrw

>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* Length = 331	Back alignment and structure

>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Length = 344	Back alignment and structure

>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} Length = 338	Back alignment and structure

>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Length = 343	Back alignment and structure

>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Length = 261	Back alignment and structure

>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Length = 357	Back alignment and structure

>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* Length = 271	Back alignment and structure

>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} PDB: 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* 1mk8_A* 1mkq_A* ... Length = 294	Back alignment and structure

>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Length = 295	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		192
3rrw_A		268	Thylakoid lumenal 29 kDa protein, chloroplastic; c	100.0
3hdl_A		304	Royal PALM TREE peroxidase; glycosylated, oxidored	100.0
1sch_A		294	PNP, peanut peroxidase, major cationic isozyme; ca	100.0
1fhf_A		304	SEED coat peroxidase; oxidoreductase; HET: HEM; 2.	100.0
1pa2_A		306	Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45	100.0
1gwu_A		309	Peroxidase C1A; oxidoreductase, glycoprotein, heme	100.0
1qgj_A		300	Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A	100.0
1bgp_A		309	Barley grain peroxidase; chromoprotein, oxidoreduc	100.0
3riv_A		271	Ascorbate peroxidase; alpha helical bundle, heme p	100.0
2vcn_A		261	Ascorbate peroxidase; INH, APX, isoniazid, oxidore	100.0
3e2o_A		294	CCP, cytochrome C peroxidase; cytochrome C peroxid	100.0
1iyn_A		295	Chloroplastic ascorbate peroxidase; hydrogen perox	100.0
3m5q_A		357	Manganese peroxidase 1; heme, Mn(II)-binding site,	100.0
3fmu_A		331	VersatIle peroxidase VPL2; class II (fungal) perox	100.0
3q3u_A		338	Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A	100.0
2e39_A		344	Peroxidase; heme protein, coordination geometry of	99.98
1llp_A		343	LIP4.15, lignin peroxidase; heme protein, glyco pr	99.98
1u2k_A		309	Peroxidase/catalase HPI; KATG, catalase-peroxidase	99.97
1itk_A		731	Catalase-peroxidase; heme protein, oxidoreductase;	99.97
3vli_A		737	Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1	99.96
1ub2_A		720	Catalase-peroxidase; KATG, cyanobacteria, oxidored	99.96
2cca_A		740	Peroxidase/catalase T; oxidoreductase, catalase-pe	99.96
2cca_A		740	Peroxidase/catalase T; oxidoreductase, catalase-pe	99.96
1itk_A		731	Catalase-peroxidase; heme protein, oxidoreductase;	99.96
3n3r_A		748	Catalase-peroxidase; E198A variant, tuberclosis, i	99.96
3ut2_A		764	Catalase-peroxidase 2; KATG, fungal, heme enzyme,	99.96
3vli_A		737	Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1	99.96
3n3r_A		748	Catalase-peroxidase; E198A variant, tuberclosis, i	99.96
3ut2_A		764	Catalase-peroxidase 2; KATG, fungal, heme enzyme,	99.95
1ub2_A		720	Catalase-peroxidase; KATG, cyanobacteria, oxidored	99.95

>3rrw_A Thylakoid lumenal 29 kDa protein, chloroplastic; chloroplast thylakoid lumen, plant protein; 2.50A {Arabidopsis thaliana}	Back alignment and structure

Probab=100.00  E-value=8.3e-59  Score=402.22  Aligned_cols=190  Identities=81%  Similarity=1.216  Sum_probs=173.6

Q ss_pred             ChHHHHHHHHHhhcCCCC-CccHHHHHHHhHHHHHHHhhHHHHHHHhCCCcccccceecccCCCCCccccccccCCCCCC
Q 029503            1 MNLLEEAKKDIDSYSKGG-PISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSNGQWGLFEKQFGRTDAQ   79 (192)
Q Consensus         1 l~~id~iK~~~e~~c~~~-~VS~ADlialAa~~Av~~~f~~~~i~~~GGp~i~~~~~~~~~g~~~~~~~~~v~~GR~Da~   79 (192)
                      +++|++||+++|+.| |+ +|||||||+|||++||+.+|++.+|+.||||.+.|++++.+||+||+|+.++|++||+|++
T Consensus        77 ~~~l~~iK~~~e~~c-pg~~VS~ADliaLAa~~AV~~~~~~~ai~~~GGp~i~g~~l~~~~gs~~~w~~~~v~~GR~D~~  155 (268)
T 3rrw_A           77 LSLIEEVKKEIDSIS-KGGPISYADIIQLAGQSAVKFTYLASAIRKCGGNEEKGNLLYTAYGSAGQWGLFDRNFGRSDAT  155 (268)
T ss_dssp             HHHHHHHHHHHHTTC-SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHSCSGGGGHHHHHCCCCCCCS
T ss_pred             HHHHHHHHHHHHhhC-CCCCCCHHHHHHHHHHHHHhhhhhhhHHHhcCCCcccccccccccccccccccCcCcCCCcCCC
Confidence            368999999999999 66 9999999999999999999999999999999999999999999999997778999999999


Q ss_pred             CCCCCCCCCCCcC-cCHHHHHHHHHHCCCCcccceeeecCCCCCCchhhHhhccCCCcHHHHHHHhhccCccchhhhHHH
Q 029503           80 EPDPEGRVPQWEK-ATVQEMKDKFSAIGLGPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVD  158 (192)
Q Consensus        80 ~~~~~g~lP~~~~-~s~~~l~~~F~~~Gl~~~elVaLsGF~gp~~l~sD~~L~~d~~t~~~v~~ya~~~~~~~~~~f~~~  158 (192)
                      .++++++||. |+ .++++|++.|++|||+++|||+||||.||..|+||++|.+||++++||+.||+|+++++|+.||++
T Consensus       156 ~~~~~g~LP~-p~~~~~~~l~~~F~~~Gl~~~dlVaLsGf~gp~~l~sD~~L~~Dp~~~~~V~~YA~d~~t~~q~~Ff~D  234 (268)
T 3rrw_A          156 EADPEGRVPQ-WGKATVQEMKDKFIAVGLGPRQLAVMSAFLGPDQAATEQLLATDPQVAPWVQKYQRSRETVSQTDYEVD  234 (268)
T ss_dssp             SCCCSSCSCC-GGGCCHHHHHHHHHHTTCCHHHHHHTGGGGCSCHHHHHHHHTTSTTTHHHHHHHHHHHHSSSCHHHHHH
T ss_pred             ccCcccCCCC-CCcCCHHHHHHHHHHcCCChhhceeeeccCCCCccHHHHHHHcChhHHHHHHHHhcCcccccHHHHHHH
Confidence            9999999999 76 699999999999999999999999999999999999999999999999999999988889999999


Q ss_pred             HHHHHHHHHcCCCCCCCCcccCcccccccccccC
Q 029503          159 LITTFTKLSSLGQQINYEAYTYPAQKIELSKLKL  192 (192)
Q Consensus       159 Fa~Am~KL~~lg~~~~~~~~~~~~~~~~~~~~~~  192 (192)
                      |++||+||+++|++||+|+|+||++|||++||||
T Consensus       235 Fa~a~~KL~~lG~~~~~~~y~~~~~~~~~~~~~~  268 (268)
T 3rrw_A          235 LITAFTKLSCLGQQINFEAYTYPVERINLSKLKL  268 (268)
T ss_dssp             HHHHHHHHHTTTCCCCTTTTCCCC----------
T ss_pred             HHHHHHHHHHcCCCCCHHHhcCCcccccchhcCC
Confidence            9999999999999999999999999999999997

PyMOL of 3rrw

>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} SCOP: a.93.1.0	Back alignment and structure

>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1	Back alignment and structure

>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1	Back alignment and structure

>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A*	Back alignment and structure

>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ...	Back alignment and structure

>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1	Back alignment and structure

>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1	Back alignment and structure

>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* 4ged_A*	Back alignment and structure

>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ...	Back alignment and structure

>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} SCOP: a.93.1.1 PDB: 4a71_A* 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 4a6z_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* ...	Back alignment and structure

>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1	Back alignment and structure

>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A*	Back alignment and structure

>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* 4fcn_A* 4g05_A* 4fcs_A* 4fef_A* 4fdq_A*	Back alignment and structure

>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} SCOP: a.93.1.0	Back alignment and structure

>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A*	Back alignment and structure

>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A*	Back alignment and structure

>1u2k_A Peroxidase/catalase HPI; KATG, catalase-peroxidase, C-terminal domain, oxidoreductase; 2.00A {Escherichia coli} SCOP: a.93.1.3 PDB: 1u2l_A 1u2j_A	Back alignment and structure

>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3	Back alignment and structure

>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A*	Back alignment and structure

>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3	Back alignment and structure

>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A*	Back alignment and structure

>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A*	Back alignment and structure

>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3	Back alignment and structure

>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A*	Back alignment and structure

>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15}	Back alignment and structure

>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A*	Back alignment and structure

>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A*	Back alignment and structure

>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15}	Back alignment and structure

>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		192
d1llpa_		343	a.93.1.1 (A:) Fungal peroxidase (ligninase) {White	2e-05
d1oafa_		250	a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glyci	0.001
d1yyda1		357	a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {	0.002

>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 343	Back information, alignment and structure


class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Fungal peroxidase (ligninase)
species: White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 30/199 (15%), Positives = 55/199 (27%), Gaps = 33/199 (16%)

Query: 4   LEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEK------GRLLY 57
           L+E       + +   ++  D I +A   A+     A  +    G +        G +  
Sbjct: 87  LDEVVAMQKPFVQKHGVTPGDFIAFAGAVALSNCPGAPQMNFFTGRKPATQPAPDGLVPE 146

Query: 58  TAYGSNGQWGLFEKQFGRTDA--------------QEPDPEGRVPQWEKATVQEMKDKFS 103
             +  +             +                + DP  +   ++          F 
Sbjct: 147 PFHTVDQIIARVNDAGEFDELELVWMLSAHSVAAVNDVDPTVQGLPFDSTPGIFDSQFFV 206

Query: 104 AI--------GLGPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDY 155
                     G G  Q  V S   G  +  T+  LA D   +   Q +  ++  +     
Sbjct: 207 ETQFRGTLFPGSGGNQGEVESGMAGEIRIQTDHTLARDSRTACEWQSFVGNQSKLVD--- 263

Query: 156 EVDLITTFTKLSSLGQQIN 174
             D    F  L+ LGQ  N
Sbjct: 264 --DFQFIFLALTQLGQDPN 280

PyMOL of d1llpa_

>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 250	Back information, alignment and structure

>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 357	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		192
d1fhfa_		304	Plant peroxidase {Soybean (Glycine max) [TaxId: 38	100.0
d1bgpa_		309	Plant peroxidase {Barley (Hordeum vulgare), peroxi	100.0
d1scha_		294	Plant peroxidase {Peanut (Arachis hypogaea) [TaxId	100.0
d1pa2a_		306	Plant peroxidase {Mouse-ear cress (Arabidopsis tha	100.0
d1qgja_		300	Plant peroxidase {Mouse-ear cress (Arabidopsis tha	100.0
d1oafa_		250	Ascorbate peroxidase {Soybean (Glycine max) [TaxId	100.0
d2euta1		291	Cytochrome c peroxidase, CCP {Baker's yeast (Sacch	100.0
d1gwua_		307	Plant peroxidase {Horseradish (Armoracia rusticana	100.0
d1iyna_		275	Ascorbate peroxidase {Common tobacco (Nicotiana ta	100.0
d1yyda1		357	Fungal peroxidase (ligninase) {Basidomycetos fungu	100.0
d2e39a1		336	Fungal peroxidase (ligninase) {Arthromyces ramosus	100.0
d1llpa_		343	Fungal peroxidase (ligninase) {White rot basidiomy	99.98
d1mwva2		308	Catalase-peroxidase KatG {Burkholderia pseudomalle	99.93
d1itka1		406	Catalase-peroxidase KatG {Archaeon Haloarcula mari	99.92
d1itka2		308	Catalase-peroxidase KatG {Archaeon Haloarcula mari	99.9
d1mwva1		406	Catalase-peroxidase KatG {Burkholderia pseudomalle	99.9
d1u2ka_		292	Catalase-peroxidase KatG {Burkholderia pseudomalle	99.9
d1ub2a2		294	Catalase-peroxidase KatG {Synechococcus sp. pcc 79	99.9
d1ub2a1		406	Catalase-peroxidase KatG {Synechococcus sp. pcc 79	99.88
d2ccaa1		410	Catalase-peroxidase KatG {Mycobacterium tuberculos	99.87
d2ccaa2		285	Catalase-peroxidase KatG {Mycobacterium tuberculos	99.82

>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]}	Back information, alignment and structure

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Soybean (Glycine max) [TaxId: 3847]

Probab=100.00  E-value=4.1e-39  Score=281.08  Aligned_cols=140  Identities=19%  Similarity=0.352  Sum_probs=127.9

Q ss_pred             hHHHHHHHHHhhcCCCCCccHHHHHHHhHHHHHHHhhHHHHHHHhCCCcccccceecccCCCCCccccccccCCCCCCCC
Q 029503            2 NLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSNGQWGLFEKQFGRTDAQEP   81 (192)
Q Consensus         2 ~~id~iK~~~e~~c~~~~VS~ADlialAa~~Av~~~f~~~~i~~~GGp~i~~~~~~~~~g~~~~~~~~~v~~GR~Da~~~   81 (192)
                      ++||.||++||..| |++|||||||+||||+||         +.+|||.                  |+|++||+|++++
T Consensus        78 ~~id~iK~~le~~c-p~~VScADIlalAardAv---------~~~GGP~------------------~~v~~GR~D~~~s  129 (304)
T d1fhfa_          78 DVVNDIKTAVENSC-PDTVSCADILAIAAEIAS---------VLGGGPG------------------WPVPLGRRDSLTA  129 (304)
T ss_dssp             HHHHHHHHHHHTTS-TTTSCHHHHHHHHHHHHH---------HTTTCCC------------------CCCCBCCCBCSCC
T ss_pred             HHHHHHHHHHHhhC-CCccCHHHHHHHHHhhhh---------hhcCCCc------------------ccccCCCcCcCcc
Confidence            78999999999999 899999999999999998         8999998                  7999999999988


Q ss_pred             C---CCCCCCCCcCcCHHHHHHHHHHCCCCcccceeeec-----------CC----------------------------
Q 029503           82 D---PEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSA-----------FL----------------------------  119 (192)
Q Consensus        82 ~---~~g~lP~~~~~s~~~l~~~F~~~Gl~~~elVaLsG-----------F~----------------------------  119 (192)
                      +   +.++||. |+.++++|++.|++|||+.+|||||+|           |.                            
T Consensus       130 ~~~~~~~~lP~-p~~~~~~l~~~F~~~Gl~~~d~VaLsGaHTiG~ahc~~~~~rl~~~~~~~~~d~~~~~~~~~~L~~~c  208 (304)
T d1fhfa_         130 NRTLANQNLPA-PFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYLEVLRARC  208 (304)
T ss_dssp             CHHHHHHHSCC-TTCCHHHHHHHHHHTTCCHHHHHHHGGGGGSCEEEGGGTGGGTSCGGGSSSCCTTSCHHHHHHHHHHS
T ss_pred             ccccccccCCC-CCCCHHHHHHHHHHcCCCHHHHHHHhhhhhhcccccccccccccCCCCCCCCCcccCHHHHHHHHHhc
Confidence            5   4457999 899999999999999999999999999           10                            


Q ss_pred             ------------------------------CCCCchhhHhhccCC--CcHHHHHHHhhccCccchhhhHHHHHHHHHHHH
Q 029503          120 ------------------------------GPDQAATEALLATDK--DVSPWVQKYQRSRETVSQTDYEVDLITTFTKLS  167 (192)
Q Consensus       120 ------------------------------gp~~l~sD~~L~~d~--~t~~~v~~ya~~~~~~~~~~f~~~Fa~Am~KL~  167 (192)
                                                    +.++|+||++|++||  +|+.+|+.||.|+..     |+++|++||+||+
T Consensus       209 ~~~~~~~~~~~~d~~tp~~fDn~Yy~~l~~~~glL~SD~~L~~dp~~~t~~~V~~yA~d~~~-----F~~~F~~Am~Km~  283 (304)
T d1fhfa_         209 PQNATGDNLTNLDLSTPDQFDNRYYSNLLQLNGLLQSDQELFSTPGADTIPIVNSFSSNQNT-----FFSNFRVSMIKMG  283 (304)
T ss_dssp             CSSCSSCCEEESCSSSTTSCSTHHHHHHHTTCCSSHHHHTTTSSTTCSSHHHHHHHHHCHHH-----HHHHHHHHHHHHT
T ss_pred             CCCCCCCcccccCCCCCCccccHHHHHHhhcCcccHhhHHHHhCCCchHHHHHHHHhhCHHH-----HHHHHHHHHHHHh
Confidence                                          015799999999997  699999999999965     9999999999999


Q ss_pred             cCCCCCCC
Q 029503          168 SLGQQINY  175 (192)
Q Consensus       168 ~lg~~~~~  175 (192)
                      ++||+++.
T Consensus       284 ~lgv~tg~  291 (304)
T d1fhfa_         284 NIGVLTGD  291 (304)
T ss_dssp             TTTCCCTT
T ss_pred             cCCCCCCC
Confidence            99998875

PyMOL of d1fhfa_

>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]}	Back information, alignment and structure

>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]}	Back information, alignment and structure

>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]}	Back information, alignment and structure

>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]}	Back information, alignment and structure

>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]}	Back information, alignment and structure

>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]}	Back information, alignment and structure

>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}	Back information, alignment and structure

>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]}	Back information, alignment and structure

>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]}	Back information, alignment and structure

>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]}	Back information, alignment and structure

>d1mwva2 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]}	Back information, alignment and structure

>d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]}	Back information, alignment and structure

>d1itka2 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]}	Back information, alignment and structure

>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]}	Back information, alignment and structure

>d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]}	Back information, alignment and structure

>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]}	Back information, alignment and structure

>d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]}	Back information, alignment and structure

>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure