Citrus Sinensis ID: 029520

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
Protein Sequence
MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNNRQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDKVS
Secondary Structure (PSIPRED)
cccccccEEEEcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHEEEHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFErsglpflsvCSDVLLLLIVLMFFRANFAafrnnrqleslpelevsEEMVNNAAASFRVKINYLLLMAhditvgkdFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVdenvisriprtlskdkvs
Flexible Loop (DISEMBL)
mgggrtadvllwkrrrvsfGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNNRQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISqhykvvdenvisriprtlskdkvs
Low Complexity Region (SEG)
MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMffranfaafrnnrQleslpelevseeMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDKVS
Disordered region (IsUnstruct)
******ADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNNRQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRI**********
Disordered Region (DISOPRED)
***GRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNNRQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDEN***************
Disordered Region (DISEMBL)
MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNNRQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDKVS
Disordered Region (DISPRO)
**GGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNNRQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPR********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNNRQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDKVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	192	2.2.26 [Sep-21-2011]
Q8GYH6	226	Reticulon-like protein B1	yes	no	0.994	0.845	0.682	3e-74
Q9SUT9	271	Reticulon-like protein B2	no	no	0.984	0.697	0.352	3e-31
Q9SUR3	275	Reticulon-like protein B1	no	no	0.984	0.687	0.342	5e-30
Q6DBN4	253	Reticulon-like protein B6	no	no	0.947	0.719	0.349	5e-29
Q9FFS0	257	Reticulon-like protein B4	no	no	0.984	0.735	0.348	6e-29
Q6NPD8	201	Reticulon-like protein B1	no	no	0.927	0.885	0.346	8e-29
Q9SH59	255	Reticulon-like protein B3	no	no	0.968	0.729	0.336	1e-28
Q9LT71	200	Reticulon-like protein B1	no	no	0.942	0.905	0.352	6e-28
O82352	255	Reticulon-like protein B5	no	no	0.947	0.713	0.355	1e-27
Q9SS37	247	Reticulon-like protein B8	no	no	0.947	0.736	0.327	2e-24

>sp|Q8GYH6|RTNLP_ARATH Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1

 Score =  277 bits (708), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 131/192 (68%), Positives = 165/192 (85%), Gaps = 1/192 (0%)

Query: 1   MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANF 60
           MGGG+ AD+LLW+RR +S GVI+++TVAWLIFE SGLPFLSV SDVLL++I++ F  A  
Sbjct: 36  MGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARV 95

Query: 61  AAFRNNRQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLW 120
           +AFRN RQL SLPEL +SEEMVN+AAASFR+K+N+LL+MAHD+TVG DFRLFF+VV  LW
Sbjct: 96  SAFRN-RQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLW 154

Query: 121 LLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVIS 180
           LLSAIGSY S  TL YIGT+LS+T+PALYS+++++VD+ CG IH+ +S HYK+VDENVIS
Sbjct: 155 LLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVIS 214

Query: 181 RIPRTLSKDKVS 192
           R+  +LSKDK S
Sbjct: 215 RLSWSLSKDKDS 226

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUT9|RTNLB_ARATH Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1

 Score =  134 bits (337), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 110/190 (57%), Gaps = 1/190 (0%)

Query: 1   MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANF 60
           +GGG+ AD+ +WK +++S GV   ATVAW++FE      L++   V+++ + ++F  +N 
Sbjct: 80  LGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNA 139

Query: 61  AAFRNNRQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLW 120
             F  ++    +PE+ + EE +   A+  R++IN  +    +I  G+D + F   +A LW
Sbjct: 140 TMF-IHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLW 198

Query: 121 LLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVIS 180
           +LS +G  +SF TLAYI  +L  TVP  Y ++E +VD Y       + + Y V+D  V S
Sbjct: 199 VLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFS 258

Query: 181 RIPRTLSKDK 190
           +IPR   KDK
Sbjct: 259 KIPRGPLKDK 268

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUR3|RTNLA_ARATH Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1

 Score =  130 bits (327), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 65/190 (34%), Positives = 110/190 (57%), Gaps = 1/190 (0%)

Query: 1   MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANF 60
           +GGG+ AD+ +WK +++S GV+  AT AW++FE      L++   V+++++ ++F  +N 
Sbjct: 84  LGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNA 143

Query: 61  AAFRNNRQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLW 120
             F N +    +PE+ + EE +   A+  R++IN       +I  G+D + F   +A LW
Sbjct: 144 TMFIN-KSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLW 202

Query: 121 LLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVIS 180
           +LS +G  F+F TLAYI  +L  TVP  Y ++E +VD         + + Y V+DE V+S
Sbjct: 203 VLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLS 262

Query: 181 RIPRTLSKDK 190
           +IP    K+K
Sbjct: 263 KIPLGPLKNK 272

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBN4|RTNLF_ARATH Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1

 Score =  127 bits (319), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 106/183 (57%), Gaps = 1/183 (0%)

Query: 1   MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANF 60
           +GGG  ADV LW+ +++S  V+ VAT  W++FE     FLS+   +L+  +  +F  +N 
Sbjct: 63  LGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNA 122

Query: 61  AAFRNNRQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLW 120
            AF N +    +PE+ + EE      ++ R ++N   ++   I +G+D + F  VV  LW
Sbjct: 123 HAFMN-KTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLW 181

Query: 121 LLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVIS 180
           ++S +G++F+F TL YI  ++  TVP LY + E +VD       K + +HY V DE V+S
Sbjct: 182 IISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKVLS 241

Query: 181 RIP 183
           ++P
Sbjct: 242 KLP 244

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFS0|RTNLD_ARATH Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1

 Score =  127 bits (318), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 68/195 (34%), Positives = 110/195 (56%), Gaps = 6/195 (3%)

Query: 1   MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANF 60
           +GGG+ AD+ LW+ ++VS GV+   T +W++FE      L+      +  +  +F  +N 
Sbjct: 63  LGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNA 122

Query: 61  AAFRNNRQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLW 120
             F + +    +PE+ + E+ +    +  R++IN  L +  +I  GKD + F  V+A LW
Sbjct: 123 CTFIH-KSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLW 181

Query: 121 LLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDE---- 176
           +LS IGS ++F TL Y  T+L  T+P LY ++E +VD Y     + I + Y V+DE    
Sbjct: 182 VLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLR 241

Query: 177 NVISRIPR-TLSKDK 190
            VIS+IPR  L+K K
Sbjct: 242 KVISKIPRGALNKKK 256

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NPD8|RTNLJ_ARATH Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1

 Score =  126 bits (317), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 106/179 (59%), Gaps = 1/179 (0%)

Query: 4   GRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAF 63
           G  AD+++WK RR  F ++   T+ W +FE+ G  F     +  LL +V++F  A  +A 
Sbjct: 12  GSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAK-SAI 70

Query: 64  RNNRQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLS 123
             NR +  LP LE++EE V   A + RV IN +L +A +I VG++ +  F+V   LW +S
Sbjct: 71  LFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVS 130

Query: 124 AIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRI 182
            +G++ +F T+ Y+G +LS+ +P LY R++  +D    + H+ I   Y+ +DE ++ +I
Sbjct: 131 FVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKIDERLLQKI 189

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH59|RTNLC_ARATH Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1

 Score =  126 bits (316), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 110/187 (58%), Gaps = 1/187 (0%)

Query: 2   GGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFA 61
           GGG+ AD+ LW+ ++VS GV+  ATV+W++FE      L++   + +L + ++F  ++ +
Sbjct: 60  GGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSAS 119

Query: 62  AFRNNRQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWL 121
            F +   L  +PE+ + E++V   A+  R++IN    +  DI  G+D + F  V+A LW+
Sbjct: 120 TFIHKSPLH-IPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWV 178

Query: 122 LSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISR 181
           LS +GS  +F TL YI T+L  T+P LY ++E +VD +     + I + Y   D  V+S+
Sbjct: 179 LSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLSK 238

Query: 182 IPRTLSK 188
           +   + K
Sbjct: 239 VMSKIPK 245

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LT71|RTNLK_ARATH Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1

 Score =  124 bits (310), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 105/190 (55%), Gaps = 9/190 (4%)

Query: 1   MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANF 60
           +G G  AD+LLW+ R  +  +++ +T  W +FER+G   LS  S+VLLLL+ + F  A  
Sbjct: 17  LGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKS 76

Query: 61  AAFRNNRQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLW 120
           A   N R L  +P +E+ EE  N AA   RV INY+L +A DIT+ ++     QV   LW
Sbjct: 77  ATVLN-RPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLW 135

Query: 121 LLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVIS 180
            +S +G+  +  TL YIG LLS++ P +Y +++  +D       K +         N+  
Sbjct: 136 AISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHIDEKVNSTSKFV--------RNISR 187

Query: 181 RIPRTLSKDK 190
           + P  ++K+K
Sbjct: 188 KFPLPINKEK 197

Arabidopsis thaliana (taxid: 3702)

>sp|O82352|RTNLE_ARATH Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1

 Score =  122 bits (306), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/183 (35%), Positives = 105/183 (57%), Gaps = 1/183 (0%)

Query: 1   MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANF 60
           +GGG+ ADV LW+ +++S  V+ VAT  W++FE      LS+   + +L +  +F  +N 
Sbjct: 63  LGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSN- 121

Query: 61  AAFRNNRQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLW 120
           A    N+    +PE+ V EE     A+S R ++N   ++   I +G+D + F  VV  LW
Sbjct: 122 AHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLW 181

Query: 121 LLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVIS 180
           ++S +G++F+F TL YI  ++  TVP LY + E +VD       K + + Y V DE V+S
Sbjct: 182 IISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVLS 241

Query: 181 RIP 183
           +IP
Sbjct: 242 KIP 244

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS37|RTNLH_ARATH Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1

 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 99/183 (54%), Gaps = 1/183 (0%)

Query: 1   MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANF 60
           +GGG++ADVLLW+ +++S  V++ AT  W++FE     FLS+    LLL ++  F  +N 
Sbjct: 56  LGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNA 115

Query: 61  AAFRNNRQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLW 120
           + F N  Q   +P L + ++       +   ++N  LL   D+    + + F   V  LW
Sbjct: 116 SGFLNRSQ-SRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLW 174

Query: 121 LLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVIS 180
           + + +GS  +F T+ YIG + + T+P LY R+E  VD +   +      HYK +D   +S
Sbjct: 175 VAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMDSMIMKFHSHYKKLDTGFLS 234

Query: 181 RIP 183
           RIP
Sbjct: 235 RIP 237

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
224144977	244	predicted protein [Populus trichocarpa]	0.994	0.782	0.755	2e-75
359486460	227	PREDICTED: reticulon-like protein B16-li	0.984	0.832	0.768	2e-75
42572359	226	reticulon-like protein B16 [Arabidopsis	0.994	0.845	0.682	2e-72
145332022	227	reticulon-like protein B16 [Arabidopsis	0.994	0.841	0.683	1e-71
334185244	194	reticulon-like protein B16 [Arabidopsis	0.963	0.953	0.682	1e-69
145362438	193	reticulon-like protein B16 [Arabidopsis	0.963	0.958	0.682	2e-69
238479721	249	reticulon-like protein B16 [Arabidopsis	0.963	0.742	0.684	8e-68
297833878	224	predicted protein [Arabidopsis lyrata su	0.963	0.825	0.668	7e-67
449441250	224	PREDICTED: reticulon-like protein B16-li	0.984	0.843	0.657	3e-65
226496479	228	seed maturation protein [Zea mays] gi|19	0.979	0.824	0.619	3e-64

>gi|224144977|ref|XP_002325482.1| predicted protein [Populus trichocarpa] gi|222862357|gb|EEE99863.1| predicted protein [Populus trichocarpa]

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 145/192 (75%), Positives = 171/192 (89%), Gaps = 1/192 (0%)

Query: 1   MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANF 60
           MG G+ ADVLLWK   VSFGVI+VATV+W IFERSGLPFL++CSDVLL+LIVL+F RAN 
Sbjct: 54  MGAGKAADVLLWKWWHVSFGVIMVATVSWFIFERSGLPFLTICSDVLLILIVLLFVRANI 113

Query: 61  AAFRNNRQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLW 120
           A   N +QL+SLPEL +SEEMVN+AAASFRVKIN +LLMAHDIT+GKDFRLFF+VV +LW
Sbjct: 114 ADMIN-KQLQSLPELVLSEEMVNSAAASFRVKINNVLLMAHDITLGKDFRLFFKVVVFLW 172

Query: 121 LLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVIS 180
           LLS +GSYFSFFTLAYIGT+LSIT+PALYSR+E RVDR CG+IH+ +S HYK+VDE+VIS
Sbjct: 173 LLSTVGSYFSFFTLAYIGTILSITIPALYSRYEERVDRCCGIIHRKLSHHYKIVDESVIS 232

Query: 181 RIPRTLSKDKVS 192
           RIP++LSKDK S
Sbjct: 233 RIPQSLSKDKDS 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486460|ref|XP_002275157.2| PREDICTED: reticulon-like protein B16-like [Vitis vinifera] gi|297736488|emb|CBI25359.3| unnamed protein product [Vitis vinifera]

 Score =  286 bits (733), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 146/190 (76%), Positives = 170/190 (89%), Gaps = 1/190 (0%)

Query: 1   MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANF 60
           MGGG+ ADVLLWKRRRVS G IVVATVAW++FERSGL FLS+CSDVLL+LIV++F RAN+
Sbjct: 37  MGGGKAADVLLWKRRRVSCGTIVVATVAWILFERSGLSFLSICSDVLLILIVVLFLRANY 96

Query: 61  AAFRNNRQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLW 120
           AAFRN +QL+SLPELE+SEEMVN+ A SFRVKINYLLLMAHDIT+GKDFRLFF+VV  LW
Sbjct: 97  AAFRN-KQLKSLPELELSEEMVNSVAGSFRVKINYLLLMAHDITLGKDFRLFFKVVLGLW 155

Query: 121 LLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVIS 180
           LLS +GS FSFFTLAYIGT++SITVPALYS++E  VD+Y G+IH+  S+HYK+VDENVI 
Sbjct: 156 LLSVVGSSFSFFTLAYIGTIISITVPALYSKYEEHVDKYFGIIHRKFSKHYKLVDENVIR 215

Query: 181 RIPRTLSKDK 190
           RIP  LSKDK
Sbjct: 216 RIPPGLSKDK 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42572359|ref|NP_974275.1| reticulon-like protein B16 [Arabidopsis thaliana] gi|75151434|sp|Q8GYH6.1|RTNLP_ARATH RecName: Full=Reticulon-like protein B16; Short=AtRTNLB16 gi|26450318|dbj|BAC42275.1| unknown protein [Arabidopsis thaliana] gi|28827594|gb|AAO50641.1| unknown protein [Arabidopsis thaliana] gi|332641451|gb|AEE74972.1| reticulon-like protein B16 [Arabidopsis thaliana]

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 131/192 (68%), Positives = 165/192 (85%), Gaps = 1/192 (0%)

Query: 1   MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANF 60
           MGGG+ AD+LLW+RR +S GVI+++TVAWLIFE SGLPFLSV SDVLL++I++ F  A  
Sbjct: 36  MGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARV 95

Query: 61  AAFRNNRQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLW 120
           +AFRN RQL SLPEL +SEEMVN+AAASFR+K+N+LL+MAHD+TVG DFRLFF+VV  LW
Sbjct: 96  SAFRN-RQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLW 154

Query: 121 LLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVIS 180
           LLSAIGSY S  TL YIGT+LS+T+PALYS+++++VD+ CG IH+ +S HYK+VDENVIS
Sbjct: 155 LLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVIS 214

Query: 181 RIPRTLSKDKVS 192
           R+  +LSKDK S
Sbjct: 215 RLSWSLSKDKDS 226

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145332022|ref|NP_001078133.1| reticulon-like protein B16 [Arabidopsis thaliana] gi|332641453|gb|AEE74974.1| reticulon-like protein B16 [Arabidopsis thaliana]

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 132/193 (68%), Positives = 165/193 (85%), Gaps = 2/193 (1%)

Query: 1   MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANF 60
           MGGG+ AD+LLW+RR +S GVI+++TVAWLIFE SGLPFLSV SDVLL++I++ F  A  
Sbjct: 36  MGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARV 95

Query: 61  AAFRNNRQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFF-QVVAYL 119
           +AFRN RQL SLPEL +SEEMVN+AAASFR+K+N+LL+MAHD+TVG DFRLFF QVV  L
Sbjct: 96  SAFRN-RQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKQVVICL 154

Query: 120 WLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVI 179
           WLLSAIGSY S  TL YIGT+LS+T+PALYS+++++VD+ CG IH+ +S HYK+VDENVI
Sbjct: 155 WLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVI 214

Query: 180 SRIPRTLSKDKVS 192
           SR+  +LSKDK S
Sbjct: 215 SRLSWSLSKDKDS 227

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334185244|ref|NP_001189857.1| reticulon-like protein B16 [Arabidopsis thaliana] gi|332641455|gb|AEE74976.1| reticulon-like protein B16 [Arabidopsis thaliana]

 Score =  267 bits (683), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 127/186 (68%), Positives = 160/186 (86%), Gaps = 1/186 (0%)

Query: 7   ADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNN 66
           AD+LLW+RR +S GVI+++TVAWLIFE SGLPFLSV SDVLL++I++ F  A  +AFRN 
Sbjct: 10  ADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRN- 68

Query: 67  RQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIG 126
           RQL SLPEL +SEEMVN+AAASFR+K+N+LL+MAHD+TVG DFRLFF+VV  LWLLSAIG
Sbjct: 69  RQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIG 128

Query: 127 SYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTL 186
           SY S  TL YIGT+LS+T+PALYS+++++VD+ CG IH+ +S HYK+VDENVISR+  +L
Sbjct: 129 SYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSL 188

Query: 187 SKDKVS 192
           SKDK S
Sbjct: 189 SKDKDS 194

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145362438|ref|NP_974276.3| reticulon-like protein B16 [Arabidopsis thaliana] gi|110743729|dbj|BAE99701.1| hypothetical protein [Arabidopsis thaliana] gi|332641452|gb|AEE74973.1| reticulon-like protein B16 [Arabidopsis thaliana]

 Score =  266 bits (681), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 127/186 (68%), Positives = 160/186 (86%), Gaps = 1/186 (0%)

Query: 7   ADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNN 66
           AD+LLW+RR +S GVI+++TVAWLIFE SGLPFLSV SDVLL++I++ F  A  +AFRN 
Sbjct: 9   ADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRN- 67

Query: 67  RQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIG 126
           RQL SLPEL +SEEMVN+AAASFR+K+N+LL+MAHD+TVG DFRLFF+VV  LWLLSAIG
Sbjct: 68  RQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIG 127

Query: 127 SYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTL 186
           SY S  TL YIGT+LS+T+PALYS+++++VD+ CG IH+ +S HYK+VDENVISR+  +L
Sbjct: 128 SYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSL 187

Query: 187 SKDKVS 192
           SKDK S
Sbjct: 188 SKDKDS 193

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238479721|ref|NP_001154603.1| reticulon-like protein B16 [Arabidopsis thaliana] gi|332641454|gb|AEE74975.1| reticulon-like protein B16 [Arabidopsis thaliana]

 Score =  261 bits (668), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 128/187 (68%), Positives = 160/187 (85%), Gaps = 2/187 (1%)

Query: 7   ADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNN 66
           AD+LLW+RR +S GVI+++TVAWLIFE SGLPFLSV SDVLL++I++ F  A  +AFRN 
Sbjct: 64  ADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRN- 122

Query: 67  RQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFF-QVVAYLWLLSAI 125
           RQL SLPEL +SEEMVN+AAASFR+K+N+LL+MAHD+TVG DFRLFF QVV  LWLLSAI
Sbjct: 123 RQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKQVVICLWLLSAI 182

Query: 126 GSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRT 185
           GSY S  TL YIGT+LS+T+PALYS+++++VD+ CG IH+ +S HYK+VDENVISR+  +
Sbjct: 183 GSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWS 242

Query: 186 LSKDKVS 192
           LSKDK S
Sbjct: 243 LSKDKDS 249

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833878|ref|XP_002884821.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297330661|gb|EFH61080.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  258 bits (660), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 125/187 (66%), Positives = 157/187 (83%), Gaps = 2/187 (1%)

Query: 7   ADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNN 66
           AD+LLW+RR +S GVI+++TVAWLIFE SGLPFLSV SDVLL+ I++ F  A  +AFR  
Sbjct: 39  ADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIGIIISFVHARVSAFRK- 97

Query: 67  RQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFF-QVVAYLWLLSAI 125
           RQL SLPEL +SEEMVN+AAASFR+K+N+LL+MAHD+TVG DFRLFF QVV  LWLLSAI
Sbjct: 98  RQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKQVVICLWLLSAI 157

Query: 126 GSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRT 185
           GSY S  TL YIGT+LS+T+PALYS+++++VD+ CG IH+ +S HYK+VDENVISR+  +
Sbjct: 158 GSYISLCTLVYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWS 217

Query: 186 LSKDKVS 192
           L+ DK S
Sbjct: 218 LTNDKDS 224

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441250|ref|XP_004138395.1| PREDICTED: reticulon-like protein B16-like [Cucumis sativus] gi|449514721|ref|XP_004164461.1| PREDICTED: reticulon-like protein B16-like [Cucumis sativus]

 Score =  253 bits (645), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 125/190 (65%), Positives = 157/190 (82%), Gaps = 1/190 (0%)

Query: 1   MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANF 60
           MGGG+ AD+LLWK+  VS GV+VV+TV WL+ E SGLP L+ CSDVLL+L+VL+F RANF
Sbjct: 34  MGGGKAADILLWKQWHVSIGVLVVSTVFWLLIEHSGLPLLTTCSDVLLILVVLLFLRANF 93

Query: 61  AAFRNNRQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLW 120
           AAFRN +QL++LP+L +SEE VNN AAS R KIN  LLMAHDITVG DF+LFF++V  LW
Sbjct: 94  AAFRN-KQLQTLPQLVLSEEFVNNVAASLRAKINNTLLMAHDITVGNDFKLFFRMVIGLW 152

Query: 121 LLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVIS 180
           LLS +GSY SFFT AY+GT++SIT+PALYS+++  VDRYCGMI +   +HY+V+DE+V S
Sbjct: 153 LLSVVGSYVSFFTFAYVGTIISITIPALYSKYDKHVDRYCGMIRQQFRKHYRVMDESVFS 212

Query: 181 RIPRTLSKDK 190
           R+P  LSKDK
Sbjct: 213 RLPGGLSKDK 222

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226496479|ref|NP_001149392.1| seed maturation protein [Zea mays] gi|195626916|gb|ACG35288.1| seed maturation protein [Zea mays] gi|223947427|gb|ACN27797.1| unknown [Zea mays] gi|413955798|gb|AFW88447.1| Seed maturation protein isoform 1 [Zea mays] gi|413955799|gb|AFW88448.1| Seed maturation protein isoform 2 [Zea mays]

 Score =  249 bits (637), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 117/189 (61%), Positives = 154/189 (81%), Gaps = 1/189 (0%)

Query: 2   GGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFA 61
           GGG+ AD++LW+R RV+FGVI  AT+AW +FE+SGL  L++CSD+LL+LIVL F R   A
Sbjct: 39  GGGKAADIILWRRARVTFGVIFGATLAWWLFEKSGLSLLTICSDILLILIVLQFIRVKIA 98

Query: 62  AFRNNRQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWL 121
              + RQ   LPEL +SEEMV+NAAASFRVK+N +L++AHDIT+GKDFRLFFQVV  LWL
Sbjct: 99  GLLD-RQPRPLPELVLSEEMVSNAAASFRVKVNSMLMIAHDITLGKDFRLFFQVVIVLWL 157

Query: 122 LSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISR 181
           LS IG++ S  TLAYIGT+  +T+PALY++++  VDRY GM++++IS+HYK+VDENVISR
Sbjct: 158 LSVIGNFCSSITLAYIGTVALVTMPALYNKYQRPVDRYAGMVYRNISRHYKIVDENVISR 217

Query: 182 IPRTLSKDK 190
           +PR   +DK
Sbjct: 218 LPRRFIRDK 226

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
TAIR|locus:1005716554	249	AT3G10915 [Arabidopsis thalian	0.963	0.742	0.593	3.7e-55
TAIR|locus:2160447	257	BTI3 "VIRB2-interacting protei	0.541	0.404	0.422	6.4e-26
TAIR|locus:2128238	271	BTI2 "VIRB2-interacting protei	0.984	0.697	0.315	1.6e-24
TAIR|locus:2089663	225	AT3G18260 "AT3G18260" [Arabido	0.546	0.466	0.390	5.4e-23
TAIR|locus:2062882	255	AT2G46170 [Arabidopsis thalian	0.979	0.737	0.324	1.3e-22
TAIR|locus:2128494	275	BTI1 "VIRB2-interacting protei	0.984	0.687	0.3	1.6e-22
TAIR|locus:2049077	201	AT2G15280 "AT2G15280" [Arabido	0.916	0.875	0.292	1.9e-21
TAIR|locus:2080315	203	AT3G54120 "AT3G54120" [Arabido	0.791	0.748	0.333	1e-20
TAIR|locus:2046783	206	RTNLB13 "AT2G23640" [Arabidops	0.890	0.830	0.180	4.5e-11
TAIR|locus:2082772	264	AT3G61560 [Arabidopsis thalian	0.276	0.200	0.425	8.6e-11

TAIR|locus:1005716554 AT3G10915 [Arabidopsis thaliana (taxid:3702)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 111/187 (59%), Positives = 142/187 (75%)

Query:     7 ADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXX 66
             AD+LLW+RR +S GVI+++TVAWLIFE SGLPFLSV SDVLL+ ++++            
Sbjct:    64 ADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLI-VIMISFVHARVSAFRN 122

Query:    67 XQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFF-QVVAYLWLLSAI 125
              Q            MVN+AAASFR+K+N+LL+MAHD+TVG DFRLFF QVV  LWLLSAI
Sbjct:   123 RQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKQVVICLWLLSAI 182

Query:   126 GSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRT 185
             GSY S  TL YIGT+LS+T+PALYS+++++VD+ CG IH+ +S HYK+VDENVISR+  +
Sbjct:   183 GSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWS 242

Query:   186 LSKDKVS 192
             LSKDK S
Sbjct:   243 LSKDKDS 249

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2160447 BTI3 "VIRB2-interacting protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
 Identities = 46/109 (42%), Positives = 66/109 (60%)

Query:    87 ASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVP 146
             +  R++IN  L +  +I  GKD + F  V+A LW+LS IGS ++F TL Y  T+L  T+P
Sbjct:   148 SGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIP 207

Query:   147 ALYSRFEARVDRYCGMIHKSISQHYKVVDENV----ISRIPR-TLSKDK 190
              LY ++E +VD Y     + I + Y V+DE V    IS+IPR  L+K K
Sbjct:   208 VLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRKVISKIPRGALNKKK 256

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2128238 BTI2 "VIRB2-interacting protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 60/190 (31%), Positives = 98/190 (51%)

Query:     1 MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXX 60
             +GGG+ AD+ +WK +++S GV   ATVAW++FE      L++   V+++ + ++      
Sbjct:    80 LGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNA 139

Query:    61 XXXXXXXQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLW 120
                                 ++   A+  R++IN  +    +I  G+D + F   +A LW
Sbjct:   140 TMFIHKSPPKIPEVHIPEEPLLQ-LASGLRIEINRGISSLREIASGRDIKKFLSAIAGLW 198

Query:   121 LLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVIS 180
             +LS +G  +SF TLAYI  +L  TVP  Y ++E +VD Y       + + Y V+D  V S
Sbjct:   199 VLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFS 258

Query:   181 RIPRTLSKDK 190
             +IPR   KDK
Sbjct:   259 KIPRGPLKDK 268

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2089663 AT3G18260 "AT3G18260" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
 Identities = 41/105 (39%), Positives = 62/105 (59%)

Query:    86 AASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITV 145
             A SF V+ N +L    D+  G+D  LFF     L+++S IG+YF+F  L +IG +   T+
Sbjct:   118 ARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTL 177

Query:   146 PALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDK 190
             P +Y  +E  VD   G + + + + YK VD NV+S+IPR   K+K
Sbjct:   178 PVMYEMYEDDVDTAAGKLMRKMKKLYKKVDTNVLSKIPRGTVKNK 222

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2062882 AT2G46170 [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 62/191 (32%), Positives = 96/191 (50%)

Query:     1 MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSV-CSDVLLLLIVLMXXXXX 59
             +GGG+ ADV LW+ +++S  V+ VAT  W++FE      LS+ C   +L L  L      
Sbjct:    63 LGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNA 122

Query:    60 XXXXXXXXQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYL 119
                                  +V   A+S R ++N   ++   I +G+D + F  VV  L
Sbjct:   123 HTLINKTSPQIPEIHVPEEAFLV--VASSLRNELNQAFVILRSIALGRDLKKFLMVVVGL 180

Query:   120 WLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVI 179
             W++S +G++F+F TL YI  ++  TVP LY + E +VD       K + + Y V DE V+
Sbjct:   181 WIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVL 240

Query:   180 SRIPRTLSKDK 190
             S+IP    K K
Sbjct:   241 SKIPIASLKAK 251

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0006007 "glucose catabolic process" evidence=RCA

TAIR|locus:2128494 BTI1 "VIRB2-interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 57/190 (30%), Positives = 98/190 (51%)

Query:     1 MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXX 60
             +GGG+ AD+ +WK +++S GV+  AT AW++FE      L++   V+++++ ++      
Sbjct:    84 LGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNA 143

Query:    61 XXXXXXXQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLW 120
                                 ++   A+  R++IN       +I  G+D + F   +A LW
Sbjct:   144 TMFINKSPPKIPEVHIPEEPILQ-LASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLW 202

Query:   121 LLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVIS 180
             +LS +G  F+F TLAYI  +L  TVP  Y ++E +VD         + + Y V+DE V+S
Sbjct:   203 VLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLS 262

Query:   181 RIPRTLSKDK 190
             +IP    K+K
Sbjct:   263 KIPLGPLKNK 272

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

TAIR|locus:2049077 AT2G15280 "AT2G15280" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 53/181 (29%), Positives = 95/181 (52%)

Query:     4 GRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLS--VCSDVLLLLIVLMXXXXXXX 61
             G  AD+++WK RR  F ++   T+ W +FE+ G  F    V + +L ++I+ +       
Sbjct:    12 GSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAIL 71

Query:    62 XXXXXXQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWL 121
                   Q            MV +A    RV IN +L +A +I VG++ +  F+V   LW 
Sbjct:    72 FNRPMPQLPNLEITEEFVFMVADA---IRVWINTVLAVAREIYVGRNAKQLFRVSVVLWT 128

Query:   122 LSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISR 181
             +S +G++ +F T+ Y+G +LS+ +P LY R++  +D    + H+ I   Y+ +DE ++ +
Sbjct:   129 VSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKIDERLLQK 188

Query:   182 I 182
             I
Sbjct:   189 I 189

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080315 AT3G54120 "AT3G54120" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 51/153 (33%), Positives = 80/153 (52%)

Query:     1 MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXX 60
             +GGG  ADV+LW+++ VS G++ V   +W++FE       ++ S VLLLL+ ++      
Sbjct:    19 LGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKS 78

Query:    61 XXXXXXXQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLW 120
                                 M   A+   R+ +N LL ++HDI + +D  L+ +V   L+
Sbjct:    79 ASILNR-PSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLF 137

Query:   121 LLSAIGSYFSFFTLAYIGTLLSITVPALYSRFE 153
             LLS IGS   F TL +   L+ +TVPA Y R+E
Sbjct:   138 LLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYE 170

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2046783 RTNLB13 "AT2G23640" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 31/172 (18%), Positives = 77/172 (44%)

Query:     8 DVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXXX 67
             D+ LW+R++++F  ++V+T  W++    G   +++ S + + ++ ++             
Sbjct:    18 DIYLWRRKKLAFSTLLVSTSTWILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLLSKV 77

Query:    68 QXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGS 127
             +            +V     S R+ +  ++     +    ++ +F + V   W+LS IG+
Sbjct:    78 EPELSGLEVSEEFVVETVR-SCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRIGN 136

Query:   128 YFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVI 179
                F T  +IG ++ +TVP L+  +  ++ ++ G +       Y    E ++
Sbjct:   137 LLDFHTCLFIGLVMGLTVPKLWEEYGDQIQKHLGSLKDKSKGAYNTTHEKIL 188

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

TAIR|locus:2082772 AT3G61560 [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
 Identities = 23/54 (42%), Positives = 33/54 (61%)

Query:     1 MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLS-VCSDVLLLLIVL 53
             +GGG  ADV LW+ +++S  V+ VAT  W++FE     FLS VC  ++  L  L
Sbjct:    63 LGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAAL 116

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GYH6	RTNLP_ARATH	No assigned EC number	0.6822	0.9947	0.8451	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029447001 SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (227 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	192
pfam02453	164	pfam02453, Reticulon, Reticulon	2e-41

>gnl|CDD|217046 pfam02453, Reticulon, Reticulon

 Score =  136 bits (346), Expect = 2e-41
 Identities = 59/164 (35%), Positives = 82/164 (50%)

Query: 6   TADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRN 65
            AD+LLW+  + S  V     V WL+F  SG   LSV S +LLLL+ + F         N
Sbjct: 1   VADLLLWRDPKKSGVVFGSLLVIWLLFSLSGYSLLSVLSYLLLLLLAVTFLWRLAKKLLN 60

Query: 66  NRQLESLPELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAI 125
                  P++ +SEE V   A S RV IN  L     + +G+D     +    LWLLS +
Sbjct: 61  AVPEPLDPDVTLSEETVEEIADSLRVLINKALKELRRLFLGEDLVDSLKAAVGLWLLSYL 120

Query: 126 GSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQ 169
           GS FS  TL YIG +L+ TVP LY +++  +D Y       + +
Sbjct: 121 GSLFSGLTLLYIGVILAFTVPLLYEKYQDEIDAYVEKAKAKVKK 164

Reticulon, also know as neuroendocrine-specific protein (NSP), is a protein of unknown function which associates with the endoplasmic reticulum. This family represents the C-terminal domain of the three reticulon isoforms and their homologues. Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	192
KOG1792	230	consensus Reticulon [Intracellular trafficking, se	100.0
PF02453	169	Reticulon: Reticulon; InterPro: IPR003388 Eukaryot	100.0
PF04842	683	DUF639: Plant protein of unknown function (DUF639)	97.15
KOG1792	230	consensus Reticulon [Intracellular trafficking, se	94.85
PF08372	156	PRT_C: Plant phosphoribosyltransferase C-terminal;	93.83
PF06398	359	Pex24p: Integral peroxisomal membrane peroxin; Int	92.05
PF08372	156	PRT_C: Plant phosphoribosyltransferase C-terminal;	85.07

>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.8e-49  Score=324.09  Aligned_cols=189  Identities=39%  Similarity=0.722  Sum_probs=181.8

Q ss_pred             CCCCccceeeeccccchhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--CCC-ceee
Q 029520            1 MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNNRQLE--SLP-ELEV   77 (192)
Q Consensus         1 lg~g~v~dlllWrd~~~S~~v~~~~~~~~~l~~~~~~s~is~~~~~~l~~l~~~fl~~~~~~~~~~~~~~--~~p-~~~i   77 (192)
                      +|||+++|+++|||+|.||.++++++++|++|+..+|+.++++|+++++.+.+.|.|.+...+++.+++|  ..| ++++
T Consensus        38 lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~i  117 (230)
T KOG1792|consen   38 LGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITI  117 (230)
T ss_pred             CCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeec
Confidence            6899999999999999999999999999999999999999999999999999999999988788823666  678 9999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhchHHHH
Q 029520           78 SEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVD  157 (192)
Q Consensus        78 see~v~~~~~~~~~~~n~~l~~~r~l~~~~d~~~slk~~~~L~~ls~lG~~~s~~tll~~~~~~~FTlP~~Ye~~q~~ID  157 (192)
                      |||.+++.+++++.++|+.++++|++++++|+.+++|+++.||++|++|+|||++|++|+|++++||+|++||+|||+||
T Consensus       118 pee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs~fn~lTll~ig~v~~~TvP~~YEky~d~ID  197 (230)
T KOG1792|consen  118 PEEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWILSYVGSLFNFLTLLYIGLVLLFTVPVLYEKYEDQID  197 (230)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchhHHhHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCCCccc
Q 029520          158 RYCGMIHKSISQHYKVVDENVISRIPRTLSKD  189 (192)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~k~~~kip~~~~~~  189 (192)
                      +++++++++.+++|+++++|+.+|||+++.++
T Consensus       198 ~~~~~~~~~~k~~~~~~~~k~l~kip~~~~~~  229 (230)
T KOG1792|consen  198 PYLGKVMEELKKHYRKFDEKVLSKIPAGPRKK  229 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCccccC
Confidence            99999999999999999999999999987664

>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER)

Probab=100.00  E-value=3.2e-39  Score=253.98  Aligned_cols=163  Identities=32%  Similarity=0.519  Sum_probs=45.8

Q ss_pred             cceeeeccccchhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------CCCCceeecH
Q 029520            6 TADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNNRQL------ESLPELEVSE   79 (192)
Q Consensus         6 v~dlllWrd~~~S~~v~~~~~~~~~l~~~~~~s~is~~~~~~l~~l~~~fl~~~~~~~~~~~~~------~~~p~~~ise   79 (192)
                      |+|+++||||++||.+|++++++|++++++++|++|++|+++++.+++.+++....+.++ +++      ++.++.++||
T Consensus         1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   79 (169)
T PF02453_consen    1 VADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKVLS-RSPKGPFKEPLDYDLEISE   79 (169)
T ss_dssp             ----------------------------------------------------THCCCTCC-HHHHCTTHHHHCHHHHHCC
T ss_pred             CceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCCccCCccccccccH
Confidence            689999999999999999999999999999999999999999999998888777666555 332      2334789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhchHHHHHH
Q 029520           80 EMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRY  159 (192)
Q Consensus        80 e~v~~~~~~~~~~~n~~l~~~r~l~~~~d~~~slk~~~~L~~ls~lG~~~s~~tll~~~~~~~FTlP~~Ye~~q~~ID~~  159 (192)
                      |+++++++.+.+.+|..++.+|+++.+||+..|+++++++|+++++|+++|++|+++++++++||+|.+||+||++||++
T Consensus        80 ~~~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~~Id~~  159 (169)
T PF02453_consen   80 ERVERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQEEIDQY  159 (169)
T ss_dssp             HHHHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG----------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 029520          160 CGMIHKSISQ  169 (192)
Q Consensus       160 ~~~~~~~~~~  169 (192)
                      ++++++++|+
T Consensus       160 ~~~~~~~~~k  169 (169)
T PF02453_consen  160 VAKVKEKVKK  169 (169)
T ss_dssp             ----------
T ss_pred             HHHHHHHhcC
Confidence            9999988875

Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.

>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function

Probab=97.15  E-value=0.01  Score=55.99  Aligned_cols=162  Identities=12%  Similarity=0.146  Sum_probs=100.2

Q ss_pred             cceeeeccccchhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCCCCC--ce
Q 029520            6 TADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNNR--------QLESLP--EL   75 (192)
Q Consensus         6 v~dlllWrd~~~S~~v~~~~~~~~~l~~~~~~s~is~~~~~~l~~l~~~fl~~~~~~~~~~~--------~~~~~p--~~   75 (192)
                      +.++..|+||.+|...++....  .++.    ..+.-+.-..++.+++..+|...... +|+        .+|+-.  +-
T Consensus       506 ~~~l~~We~P~kt~~Fl~~~~~--iI~r----~wl~Y~~p~~Ll~~a~~Ml~~r~~~~-~g~~~~~v~V~~pP~~nTvEq  578 (683)
T PF04842_consen  506 LQKLASWEEPLKTLVFLALFLY--IIYR----GWLGYIFPAFLLFSAVFMLWLRYQGR-LGKSFGEVTVRDPPPKNTVEQ  578 (683)
T ss_pred             HHHHhhccCcchhHHHHHHHHH--HHHH----HHHHHHHHHHHHHHHHHHHHHHhhhc-cCCccceEEecCCCCccHHHH
Confidence            4578899999999554443333  2322    22222222223333333355333211 112        111111  22


Q ss_pred             eecHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhchHH
Q 029520           76 EVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEAR  155 (192)
Q Consensus        76 ~isee~v~~~~~~~~~~~n~~l~~~r~l~~~~d~~~slk~~~~L~~ls~lG~~~s~~tll~~~~~~~FTlP~~Ye~~q~~  155 (192)
                      .+.-..+..-++......|-++-++|.|++...+..+-++++.|-.++.+-..+-+--++.+.++-.||-..=+.+    
T Consensus       579 ilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FTre~~~Rr----  654 (683)
T PF04842_consen  579 ILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVVPFKYILLFVFLEVFTRESPFRR----  654 (683)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCch----
Confidence            2344444555677788899999999999999999999999999999999999999999999999999986443221    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcc
Q 029520          156 VDRYCGMIHKSISQHYKVVDENVISRIPRTLSK  188 (192)
Q Consensus       156 ID~~~~~~~~~~~~~~~~~~~k~~~kip~~~~~  188 (192)
                        +-.++..+++++-+        ..||-+|..
T Consensus       655 --~s~er~~RRlrEWW--------~sIPAaPV~  677 (683)
T PF04842_consen  655 --ESSERFNRRLREWW--------DSIPAAPVQ  677 (683)
T ss_pred             --hhHHHHHHHHHHHH--------hhCCccceE
Confidence              12334555555555        367776543

>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.85  E-value=0.12  Score=43.07  Aligned_cols=79  Identities=15%  Similarity=0.147  Sum_probs=63.7

Q ss_pred             HHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhc-----------------------hHH
Q 029520           99 MAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRF-----------------------EAR  155 (192)
Q Consensus        99 ~~r~l~~~~d~~~slk~~~~L~~ls~lG~~~s~~tll~~~~~~~FTlP~~Ye~~-----------------------q~~  155 (192)
                      ...+++.|||.+.++.+..+..++-.+-..++..++.....+++++++..+.++                       |++
T Consensus        42 ~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~  121 (230)
T KOG1792|consen   42 KVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEF  121 (230)
T ss_pred             chhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHH
Confidence            578999999999999988888777777788888888888888888777776655                       567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 029520          156 VDRYCGMIHKSISQHYKVVDEN  177 (192)
Q Consensus       156 ID~~~~~~~~~~~~~~~~~~~k  177 (192)
                      ++++.+.++.++|...++.++-
T Consensus       122 ~~~~a~~~~~~in~~l~~l~~i  143 (230)
T KOG1792|consen  122 VLALASSLRVEINQALSELRDI  143 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888888887777653

>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins

Probab=93.83  E-value=0.52  Score=37.07  Aligned_cols=62  Identities=13%  Similarity=0.067  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhh
Q 029520           90 RVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSR  151 (192)
Q Consensus        90 ~~~~n~~l~~~r~l~~~~d~~~slk~~~~L~~ls~lG~~~s~~tll~~~~~~~FTlP~~Ye~  151 (192)
                      ...+....+.++.++.|+|+..|..+.+++++.+.+-....+..++.+..+-.++=|++-..
T Consensus        75 lgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~  136 (156)
T PF08372_consen   75 LGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNP  136 (156)
T ss_pred             HHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCC
Confidence            33445567899999999999999999999888888877777777777777777777776553

It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).

>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide

Probab=92.05  E-value=2.1  Score=37.49  Aligned_cols=20  Identities=15%  Similarity=0.529  Sum_probs=14.7

Q ss_pred             ccceeeeccccchhHHHHHH
Q 029520            5 RTADVLLWKRRRVSFGVIVV   24 (192)
Q Consensus         5 ~v~dlllWrd~~~S~~v~~~   24 (192)
                      .+.++++|+||..+-..+..
T Consensus        31 ~vl~il~W~~p~~t~~~L~l   50 (359)
T PF06398_consen   31 RVLRILTWTNPDYTLSFLLL   50 (359)
T ss_pred             HHHHeEEeCCCCcchHHHHH
Confidence            46789999999988544443

Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].

>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins

Probab=85.07  E-value=0.59  Score=36.76  Aligned_cols=25  Identities=28%  Similarity=0.494  Sum_probs=19.6

Q ss_pred             CCccceeeeccccchhHHHHHHHHH
Q 029520            3 GGRTADVLLWKRRRVSFGVIVVATV   27 (192)
Q Consensus         3 ~g~v~dlllWrd~~~S~~v~~~~~~   27 (192)
                      |+++..++.||||..|+....+..+
T Consensus        82 gERl~allsWrdP~aT~lf~~~clv  106 (156)
T PF08372_consen   82 GERLQALLSWRDPRATALFVVFCLV  106 (156)
T ss_pred             HHHHHHhhccCCccHHHHHHHHHHH
Confidence            4577889999999999876665544

It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	192
2ko2_A	79	Reticulon-4; NOGO, membrane protein, peripheral, D	98.75
2g31_A	60	Reticulon-4; NOGO, helix, signaling protein; NMR {	98.24

>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}

Probab=98.75  E-value=1e-09  Score=75.45  Aligned_cols=60  Identities=17%  Similarity=0.128  Sum_probs=55.8

Q ss_pred             HH-HHHHHHHHhcCCCCCCCC-------ceeecHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHH
Q 029520           54 MF-FRANFAAFRNNRQLESLP-------ELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQ  114 (192)
Q Consensus        54 ~f-l~~~~~~~~~~~~~~~~p-------~~~isee~v~~~~~~~~~~~n~~l~~~r~l~~~~d~~~slk  114 (192)
                      .| +|+++.+.++ ++++.+|       |+.+|+|+++++++.+..++|.+++++|+++++||+.+|+|
T Consensus        12 sfRiYk~vlqavq-Ktd~~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlvDSLK   79 (79)
T 2ko2_A           12 GMRIYKGVIQAIQ-KSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLK   79 (79)
T ss_dssp             -CTHHHHTHHHHH-CTTTTCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTTGGGC
T ss_pred             HHHHHHHHHHHHH-hCCCCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHHHhcC
Confidence            45 8999999999 8888888       99999999999999999999999999999999999999875

>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A

Probab=98.24  E-value=1.4e-08  Score=66.42  Aligned_cols=51  Identities=20%  Similarity=0.187  Sum_probs=45.1

Q ss_pred             HHHHHHHhcCCCCCCCC-------ceeecHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 029520           57 RANFAAFRNNRQLESLP-------ELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKD  108 (192)
Q Consensus        57 ~~~~~~~~~~~~~~~~p-------~~~isee~v~~~~~~~~~~~n~~l~~~r~l~~~~d  108 (192)
                      |+++.+.++ +++..+|       |+.+|+|+++++++.+..++|.+++.+|++++++|
T Consensus         3 Yk~vlqavq-Kt~~~hPFk~yLd~di~ls~e~~~~~~~~~v~~in~~l~~lrrLfLVed   60 (60)
T 2g31_A            3 YKGVIQAIQ-KSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD   60 (60)
T ss_dssp             CCTTTTHHH-HHHHHCTTHHHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHTSSCTTC
T ss_pred             HHHHHHHHH-hCCCCCCchhccccCcCCCHHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence            455666777 7777777       99999999999999999999999999999999987

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00