Citrus Sinensis ID: 029522

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
Protein Sequence
MAEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENNRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCFGS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHccEEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccHEEEcccc
Coil and Loop (DISEMBL)
maeeepkkletetptepppppstepaapaaaeppkdvaddktvipsppaedkpeeskalavvdkapeaeppagekstegsvnrDAVLARVETEKRISLIRAWEESEKSQAENNRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCFGS
Flexible Loop (DISEMBL)
maeeepkkletetptepppppSTEPAAPAAAEPPKDVADDKTVIpsppaedkpeesKALAVVDKAPeaeppagekstegsvnrdavLARVETEKRISLiraweeseksqaennRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAkyratgsapkkllscfgs
Low Complexity Region (SEG)
MaeeepkkletetptepppppstepaapaaaeppkDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENNRKAAVeaelkkieeqlekkkaeYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCFGS
Disordered region (IsUnstruct)
***********************************************************************************************ISLI*********************************************************************************************
Disordered Region (DISOPRED)
*****************************************************************************************VETEKRISLIRAWEE*********************************************************************AKYRATGSAPKKLLSCFGS
Disordered Region (DISEMBL)
*************************************ADDKTVIPS*************AVVDK****************VNRDAVLARVETEKRISLIRAWE**************VEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCFGS
Disordered Region (DISPRO)
*******************************************************SKALA*VDKAP**************VNRDAVLARVETEKRISLIRAWEESEKSQAENNRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCFGS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCFGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	192	2.2.26 [Sep-21-2011]
P93788	198	Remorin OS=Solanum tubero	N/A	no	0.921	0.893	0.639	4e-53
Q9M2D8	212	Uncharacterized protein A	no	no	0.791	0.716	0.605	9e-43
O80837	190	Remorin OS=Arabidopsis th	no	no	0.911	0.921	0.536	9e-37

>sp|P93788|REMO_SOLTU Remorin OS=Solanum tuberosum PE=1 SV=1

 Score =  207 bits (527), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 135/211 (63%), Positives = 159/211 (75%), Gaps = 34/211 (16%)

Query: 1   MAEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDV-ADDKTVI-PS--PPAEDK--PE 54
           MAE E KK+E     +P PP      AP   E PK+V AD+K ++ P+  PPAE+K  P+
Sbjct: 1   MAELEAKKVEI---VDPAPP------APGPVEAPKEVVADEKAIVAPALPPPAEEKEKPD 51

Query: 55  ESKALAVVD-KAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAEN- 112
           +SKAL VV+ KAPE   PA EK  EGS++RDAVLARV TEKR+SLI+AWEESEKS+AEN 
Sbjct: 52  DSKALVVVETKAPE---PADEKK-EGSIDRDAVLARVATEKRVSLIKAWEESEKSKAENK 107

Query: 113 -------------NRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIE 159
                        ++KA +EAELKK+EEQLEKKKAEY EKMKNK+AL+HKEAEEKRAMIE
Sbjct: 108 AQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIE 167

Query: 160 AKRGEDLLKAEELAAKYRATGSAPKKLLSCF 190
           AKRGEDLLKAEELAAKYRATG+APKK+L  F
Sbjct: 168 AKRGEDLLKAEELAAKYRATGTAPKKILGIF 198

Binds to both simple and complex galacturonides. May be involved in cell-to-cell signaling and molecular transport.
Solanum tuberosum (taxid: 4113)

>sp|Q9M2D8|Y3126_ARATH Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1

 Score =  172 bits (437), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 103/170 (60%), Positives = 122/170 (71%), Gaps = 18/170 (10%)

Query: 35  KDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEK 94
           KDVA++K  I +PP E   ++SKAL VV+K    E PA  K    S++RD  LA +  EK
Sbjct: 47  KDVAEEK--IQNPPPEQIFDDSKALTVVEKP--VEEPAPAKPASASLDRDVKLADLSKEK 102

Query: 95  RISLIRAWEESEKSQAEN--------------NRKAAVEAELKKIEEQLEKKKAEYVEKM 140
           R+S +RAWEESEKS+AEN              ++KAAVEA+LKKIEEQLEKKKAEY E+M
Sbjct: 103 RLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERM 162

Query: 141 KNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 190
           KNK+A IHKEAEE+RAMIEAKRGED+LKAEE AAKYRATG  PK    CF
Sbjct: 163 KNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212

Arabidopsis thaliana (taxid: 3702)

>sp|O80837|REMO_ARATH Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1

 Score =  152 bits (385), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 110/205 (53%), Positives = 138/205 (67%), Gaps = 30/205 (14%)

Query: 1   MAEEE-PKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKAL 59
           MAEE+   K++ E+P    P     PA       P +VAD+K  I +PP    P ESKAL
Sbjct: 1   MAEEQKTSKVDVESPAVLAPAKEPTPA-------PVEVADEK--IHNPP----PVESKAL 47

Query: 60  AVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAEN------- 112
           AVV+K  E   P  +K++ GS +RD +LA +E EK+ S I+AWEESEKS+AEN       
Sbjct: 48  AVVEKPIEEHTP--KKASSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKIS 105

Query: 113 -------NRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGED 165
                  ++KAAVEA+L+KIEE+LEKKKA+Y EKMKNK+A IHK AEEKRAM+EAK+GE+
Sbjct: 106 DVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEE 165

Query: 166 LLKAEELAAKYRATGSAPKKLLSCF 190
           LLKAEE+ AKYRATG  PK    CF
Sbjct: 166 LLKAEEMGAKYRATGVVPKATCGCF 190


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.300    0.120    0.318 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,813,075
Number of Sequences: 539616
Number of extensions: 3493130
Number of successful extensions: 55252
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 2963
Number of HSP's that attempted gapping in prelim test: 35083
Number of HSP's gapped (non-prelim): 15246
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 58 (26.9 bits)

Exhibits a non sequence-specific DNA-binding activity.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
432278309	199	remorin [Morus indica]	0.958	0.924	0.682	3e-62
449517457	189	PREDICTED: remorin-like [Cucumis sativus	0.802	0.814	0.668	4e-53
255541538	188	Remorin, putative [Ricinus communis] gi|	0.906	0.925	0.588	7e-53
255539463	182	Remorin, putative [Ricinus communis] gi|	0.802	0.846	0.718	2e-52
34925093	198	RecName: Full=Remorin; AltName: Full=pp3	0.921	0.893	0.639	2e-51
224136994	201	predicted protein [Populus trichocarpa]	0.786	0.751	0.664	1e-50
225470169	196	PREDICTED: remorin [Vitis vinifera] gi|1	0.796	0.780	0.680	2e-50
42573455	201	Remorin family protein [Arabidopsis thal	0.953	0.910	0.625	1e-49
351724129	194	uncharacterized protein LOC100305501 [Gl	0.911	0.902	0.593	2e-49
242076586	212	hypothetical protein SORBIDRAFT_06g02363	0.989	0.896	0.588	3e-49

>gi|432278309|gb|AGB07445.1| remorin [Morus indica]

 Score =  243 bits (620), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 140/205 (68%), Positives = 161/205 (78%), Gaps = 21/205 (10%)

Query: 1   MAEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALA 60
           MAEE+P K+E E P+  PP   TE     A EPPKDV ++K+VIP PP EDKP+ESKALA
Sbjct: 1   MAEEQPIKVEPEAPSSEPP---TEAKVKPAEEPPKDVTEEKSVIPHPPPEDKPDESKALA 57

Query: 61  VVDKAPEAEPPAGEKST-EGSVNRDAVLARVETEKRISLIRAWEESEKSQAEN------- 112
           VVD  PE   PA EKS+ EGS+NRDAVLARV TEKR+SLIRAWEESEKS+AEN       
Sbjct: 58  VVDMEPE---PAAEKSSSEGSINRDAVLARVATEKRLSLIRAWEESEKSKAENKAHKNVS 114

Query: 113 -------NRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGED 165
                  ++KA+VEA+LKK EE LEKKKAEYVEKMKNK+ALIHKEAEE++A+IEAKRGE+
Sbjct: 115 SIGAWENSKKASVEAQLKKFEENLEKKKAEYVEKMKNKIALIHKEAEERKAIIEAKRGEE 174

Query: 166 LLKAEELAAKYRATGSAPKKLLSCF 190
           LLKAEE AAKYRATG+ PKKLL CF
Sbjct: 175 LLKAEESAAKYRATGTGPKKLLGCF 199

Source: Morus indica

Species: Morus indica

Genus: Morus

Family: Moraceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517457|ref|XP_004165762.1| PREDICTED: remorin-like [Cucumis sativus]

 Score =  213 bits (541), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 115/172 (66%), Positives = 139/172 (80%), Gaps = 18/172 (10%)

Query: 35  KDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEK 94
           KDV ++K+VIP PP E K ++SKAL +V+K PE   P   K+TEGSVNRDAVLA+V TEK
Sbjct: 22  KDVTEEKSVIPPPP-EHKTDDSKALVLVEKVPEVADP---KTTEGSVNRDAVLAKVATEK 77

Query: 95  RISLIRAWEESEKSQAEN--------------NRKAAVEAELKKIEEQLEKKKAEYVEKM 140
           R+SL++AWEESEKS+AEN              ++KA+VEA+LKKIEE LEKKKA+Y+E+M
Sbjct: 78  RLSLVKAWEESEKSKAENKAHKKLSSVAAWENSQKASVEADLKKIEESLEKKKAKYIEQM 137

Query: 141 KNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCFGS 192
           KNK+AL+HK AEEKRA+IEAKRGEDLLKAEE AAKYRATG+APKKLL CF S
Sbjct: 138 KNKIALLHKSAEEKRAIIEAKRGEDLLKAEETAAKYRATGTAPKKLLGCFSS 189

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541538|ref|XP_002511833.1| Remorin, putative [Ricinus communis] gi|223549013|gb|EEF50502.1| Remorin, putative [Ricinus communis]

 Score =  212 bits (539), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 120/204 (58%), Positives = 150/204 (73%), Gaps = 30/204 (14%)

Query: 1   MAEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALA 60
           MAE+E KKLE E+P  P P           AE   DVA DK  +P+P  E+KP++SKALA
Sbjct: 1   MAEQEAKKLEAESPVAPAP-----------AEAKSDVAHDKATVPTP--EEKPDDSKALA 47

Query: 61  VVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAEN-------- 112
           VV+K PE+ P   +K++ GS++RD  LA VE EKR S I+AWE+SEKS+AEN        
Sbjct: 48  VVEKVPESGP---KKTSGGSLDRDIALAEVEKEKRNSFIKAWEDSEKSKAENKAQKKLSS 104

Query: 113 ------NRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDL 166
                 ++KAA+EA+L+KIEEQLEKKKAEY EKMKNK+AL+HK+AEEKRAM+EA+RGE++
Sbjct: 105 VTAWENSKKAALEAKLRKIEEQLEKKKAEYAEKMKNKVALVHKQAEEKRAMVEAQRGEEV 164

Query: 167 LKAEELAAKYRATGSAPKKLLSCF 190
           LKAEE+AAKYRATG  PKKLL CF
Sbjct: 165 LKAEEMAAKYRATGQTPKKLLGCF 188

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539463|ref|XP_002510796.1| Remorin, putative [Ricinus communis] gi|223549911|gb|EEF51398.1| Remorin, putative [Ricinus communis]

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 125/174 (71%), Positives = 143/174 (82%), Gaps = 20/174 (11%)

Query: 31  AEPPKDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARV 90
           +EPPKDVA++K+ IP PP E   ++SKAL  V+K+ E      EKSTEGSVNRDAVLARV
Sbjct: 15  SEPPKDVAEEKSAIPPPPQEKASDDSKALVAVEKSVE------EKSTEGSVNRDAVLARV 68

Query: 91  ETEKRISLIRAWEESEKSQAEN--------------NRKAAVEAELKKIEEQLEKKKAEY 136
           ETEKR+SLIRAWEESEKS+AEN              ++KA+VEAELK++EE+LEKKKAEY
Sbjct: 69  ETEKRVSLIRAWEESEKSKAENKAHKKLSAIVSWENSKKASVEAELKQMEEKLEKKKAEY 128

Query: 137 VEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 190
           VEKMKNK+ALIHKEAEEKRAMIEAKRGEDLLKAEE AAKYRATG+APKKLL CF
Sbjct: 129 VEKMKNKIALIHKEAEEKRAMIEAKRGEDLLKAEETAAKYRATGTAPKKLLGCF 182

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|34925093|sp|P93788.1|REMO_SOLTU RecName: Full=Remorin; AltName: Full=pp34 gi|1881585|gb|AAB49425.1| remorin [Solanum tuberosum]

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 135/211 (63%), Positives = 159/211 (75%), Gaps = 34/211 (16%)

Query: 1   MAEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDV-ADDKTVI-PS--PPAEDK--PE 54
           MAE E KK+E     +P PP      AP   E PK+V AD+K ++ P+  PPAE+K  P+
Sbjct: 1   MAELEAKKVEI---VDPAPP------APGPVEAPKEVVADEKAIVAPALPPPAEEKEKPD 51

Query: 55  ESKALAVVD-KAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAEN- 112
           +SKAL VV+ KAPE   PA EK  EGS++RDAVLARV TEKR+SLI+AWEESEKS+AEN 
Sbjct: 52  DSKALVVVETKAPE---PADEKK-EGSIDRDAVLARVATEKRVSLIKAWEESEKSKAENK 107

Query: 113 -------------NRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIE 159
                        ++KA +EAELKK+EEQLEKKKAEY EKMKNK+AL+HKEAEEKRAMIE
Sbjct: 108 AQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIE 167

Query: 160 AKRGEDLLKAEELAAKYRATGSAPKKLLSCF 190
           AKRGEDLLKAEELAAKYRATG+APKK+L  F
Sbjct: 168 AKRGEDLLKAEELAAKYRATGTAPKKILGIF 198

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136994|ref|XP_002322467.1| predicted protein [Populus trichocarpa] gi|222869463|gb|EEF06594.1| predicted protein [Populus trichocarpa]

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 113/170 (66%), Positives = 135/170 (79%), Gaps = 19/170 (11%)

Query: 35  KDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEK 94
           KDVA++KTVIP   AE+K EES+A+AV++ +  AE        EGSVNRDAVLARV TEK
Sbjct: 37  KDVAEEKTVIPPSVAEEKVEESEAVAVIETSESAEEK-----KEGSVNRDAVLARVATEK 91

Query: 95  RISLIRAWEESEKSQAEN--------------NRKAAVEAELKKIEEQLEKKKAEYVEKM 140
           RISL++AWEESEKS+AEN              ++KA+VEAEL KIEEQLEKKKAE +EKM
Sbjct: 92  RISLVKAWEESEKSKAENKAHKKLSSIASWENSKKASVEAELMKIEEQLEKKKAECMEKM 151

Query: 141 KNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 190
           KNK+A+IHKEAEEK+A++EAKRGEDLLKAEE+A KYRATGS+PKKLL  F
Sbjct: 152 KNKIAMIHKEAEEKKAIVEAKRGEDLLKAEEMAGKYRATGSSPKKLLGIF 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470169|ref|XP_002267609.1| PREDICTED: remorin [Vitis vinifera] gi|147840877|emb|CAN73187.1| hypothetical protein VITISV_041529 [Vitis vinifera] gi|302143892|emb|CBI22753.3| unnamed protein product [Vitis vinifera]

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 117/172 (68%), Positives = 136/172 (79%), Gaps = 19/172 (11%)

Query: 35  KDVADDKTVIPSPPAEDKPEE-SKALAVVDKAPEAEPPAGEKSTEG-SVNRDAVLARVET 92
           KDV ++K VIP  P  ++  + +KALA+V+K PE   P  EK +EG SVNRD VLARV T
Sbjct: 28  KDVTEEKAVIPPAPPPEEKPDETKALAIVEKVPE---PIEEKGSEGGSVNRDTVLARVAT 84

Query: 93  EKRISLIRAWEESEKSQAEN--------------NRKAAVEAELKKIEEQLEKKKAEYVE 138
           EKR+SLIRAWEESEK +AEN              ++KA+VEAELKKIEE LE+KKAEYVE
Sbjct: 85  EKRLSLIRAWEESEKCKAENKAQKKLSATEAWENSQKASVEAELKKIEENLERKKAEYVE 144

Query: 139 KMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 190
           KMKNK+A+IHKEAEEKRAMIEA+RGEDLLKAEE+AAKYRATGSAPKKLL CF
Sbjct: 145 KMKNKIAIIHKEAEEKRAMIEARRGEDLLKAEEMAAKYRATGSAPKKLLGCF 196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573455|ref|NP_974824.1| Remorin family protein [Arabidopsis thaliana] gi|332005825|gb|AED93208.1| Remorin family protein [Arabidopsis thaliana]

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 130/208 (62%), Positives = 149/208 (71%), Gaps = 25/208 (12%)

Query: 1   MAEEEPKKLETETPTEPPPPPST---EPAAPAAAEPP-KDVADDKTVIPSPPAEDKPEES 56
           MAEEEPKK+ TET +EP P P     +PAA A   P  K VA    +    PAE+K E+S
Sbjct: 1   MAEEEPKKV-TETVSEPTPTPEVPVEKPAAAADVAPQEKPVAPPPVLPSPAPAEEKQEDS 59

Query: 57  KALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAEN---- 112
           KA+  V       P   E+  EGSVNRDAVLARVETEKR+SLI+AWEE+EK + EN    
Sbjct: 60  KAIVPVV------PKVEEEKKEGSVNRDAVLARVETEKRMSLIKAWEEAEKCKVENKAEK 113

Query: 113 ----------NRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKR 162
                     N+KAAVEAELKK+EEQLEKKKAEYVE+MKNK+A IHKEAEEKRAMIEAKR
Sbjct: 114 KLSSIGSWENNKKAAVEAELKKMEEQLEKKKAEYVEQMKNKIAQIHKEAEEKRAMIEAKR 173

Query: 163 GEDLLKAEELAAKYRATGSAPKKLLSCF 190
           GE++LKAEELAAKYRATG+APKKL  C 
Sbjct: 174 GEEILKAEELAAKYRATGTAPKKLFGCM 201

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724129|ref|NP_001236279.1| uncharacterized protein LOC100305501 [Glycine max] gi|255625713|gb|ACU13201.1| unknown [Glycine max]

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/209 (59%), Positives = 148/209 (70%), Gaps = 34/209 (16%)

Query: 1   MAEEEPKKL-ETET-PTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSP---PAEDKPEE 55
           M EE+ KK+ ETE+ P+ P P P           P +DVA++K+VIP P   PA+    E
Sbjct: 1   MTEEQSKKVAETESFPSNPAPEP--------VVVPKEDVAEEKSVIPQPSPSPAD----E 48

Query: 56  SKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQA----- 110
           SKAL +V+K  E    A EK  EGSVNRDAVLARV TEKR+SLI+AWEESEKS+A     
Sbjct: 49  SKALVIVEKTSEV---AEEKPIEGSVNRDAVLARVATEKRLSLIKAWEESEKSKADNKSH 105

Query: 111 ---------ENNRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAK 161
                    EN++KAA EAEL+KIEEQLEKKKAEY EK+KNK+A IH+EAEEKRA IEA+
Sbjct: 106 KKLSAISAWENSKKAAAEAELRKIEEQLEKKKAEYGEKLKNKIATIHREAEEKRAFIEAQ 165

Query: 162 RGEDLLKAEELAAKYRATGSAPKKLLSCF 190
           +GE+ LKAEE AAKYRATG+AP KL  CF
Sbjct: 166 KGEEFLKAEETAAKYRATGTAPTKLFGCF 194

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242076586|ref|XP_002448229.1| hypothetical protein SORBIDRAFT_06g023630 [Sorghum bicolor] gi|241939412|gb|EES12557.1| hypothetical protein SORBIDRAFT_06g023630 [Sorghum bicolor]

 Score =  199 bits (507), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 126/214 (58%), Positives = 154/214 (71%), Gaps = 24/214 (11%)

Query: 1   MAEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPS---PPAEDKP--EE 55
           MAEE  KK+E E  T+   P +    A   A   +DVA++K VIP+   P AE+KP  ++
Sbjct: 1   MAEEAAKKVEVEV-TKDKEPEAAPAEAVPEAAAKEDVAEEKAVIPATEPPAAEEKPPADD 59

Query: 56  SKALAVVDKA---PEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAEN 112
           SKALA+V+K    P  E PA EK   GS +RD  LARVETEKR SLI+AWEE+EK++AEN
Sbjct: 60  SKALAIVEKVADEPAPEKPAAEKQG-GSNDRDLALARVETEKRNSLIKAWEENEKTKAEN 118

Query: 113 --------------NRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMI 158
                          +KA +EA+LKKIEEQLEKKKAEY EKMKNK+A+IHKEAEEKRAM+
Sbjct: 119 KAAKKVSAILSWENTKKANIEAQLKKIEEQLEKKKAEYAEKMKNKVAMIHKEAEEKRAMV 178

Query: 159 EAKRGEDLLKAEELAAKYRATGSAPKKLLSCFGS 192
           EAKRGE++LKAEE+AAKYRATG APKKL+ CFG+
Sbjct: 179 EAKRGEEVLKAEEMAAKYRATGHAPKKLIGCFGA 212

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
UNIPROTKB|P93788	198	P93788 "Remorin" [Solanum tube	0.781	0.757	0.597	3.6e-41
TAIR|locus:2172793	202	AT5G23750 "AT5G23750" [Arabido	0.734	0.698	0.601	2.6e-38
TAIR|locus:2098921	212	AT3G61260 [Arabidopsis thalian	0.786	0.712	0.514	2.5e-33
TAIR|locus:2101303	175	AT3G48940 "AT3G48940" [Arabido	0.739	0.811	0.527	5.2e-33
TAIR|locus:2050704	190	AT2G45820 "AT2G45820" [Arabido	0.765	0.773	0.508	2.3e-32
TAIR|locus:2127058	123	AT4G00670 "AT4G00670" [Arabido	0.479	0.747	0.306	2.2e-09
TAIR|locus:2051673	486	AT2G02170 "AT2G02170" [Arabido	0.593	0.234	0.339	9.6e-09
TAIR|locus:2054376	274	AT2G41870 "AT2G41870" [Arabido	0.703	0.492	0.28	1e-06
TAIR|locus:2103508	296	AT3G57540 "AT3G57540" [Arabido	0.255	0.165	0.428	0.00045

UNIPROTKB|P93788 P93788 "Remorin" [Solanum tuberosum (taxid:4113)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 104/174 (59%), Positives = 124/174 (71%)

Query:    37 VADDKTVI-PS--PPAEDK--PEESKALAVVD-KAPEAEPPAGEKSTEGSVNRDAVLARV 90
             VAD+K ++ P+  PPAE+K  P++SKAL VV+ KAPE   PA EK  EGS++RDAVLARV
Sbjct:    29 VADEKAIVAPALPPPAEEKEKPDDSKALVVVETKAPE---PADEKK-EGSIDRDAVLARV 84

Query:    91 ETEKRISLIRAWEESEKSQAEN--------------NRKAAVXXXXXXXXXXXXXXXXXY 136
              TEKR+SLI+AWEESEKS+AEN              ++KA +                 Y
Sbjct:    85 ATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEY 144

Query:   137 VEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 190
              EKMKNK+AL+HKEAEEKRAMIEAKRGEDLLKAEELAAKYRATG+APKK+L  F
Sbjct:   145 TEKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGTAPKKILGIF 198

GO:0005886 "plasma membrane" evidence=IDA

GO:0007267 "cell-cell signaling" evidence=NAS

GO:0048032 "galacturonate binding" evidence=IDA

TAIR|locus:2172793 AT5G23750 "AT5G23750" [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 98/163 (60%), Positives = 113/163 (69%)

Query:    43 VIPSP-PAEDKPEESKALA-VVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIR 100
             V+PSP PAE+K E+SKA+  VV K  E E    E+  EGSVNRDAVLARVETEKR+SLI+
Sbjct:    45 VLPSPAPAEEKQEDSKAIVPVVPK--EVE----EEKKEGSVNRDAVLARVETEKRMSLIK 98

Query:   101 AWEESEKSQAEN--------------NRKAAVXXXXXXXXXXXXXXXXXYVEKMKNKMAL 146
             AWEE+EK + EN              N+KAAV                 YVE+MKNK+A 
Sbjct:    99 AWEEAEKCKVENKAEKKLSSIGSWENNKKAAVEAELKKMEEQLEKKKAEYVEQMKNKIAQ 158

Query:   147 IHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSC 189
             IHKEAEEKRAMIEAKRGE++LKAEELAAKYRATG+APKKL  C
Sbjct:   159 IHKEAEEKRAMIEAKRGEEILKAEELAAKYRATGTAPKKLFGC 201

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0042546 "cell wall biogenesis" evidence=RCA

TAIR|locus:2098921 AT3G61260 [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 87/169 (51%), Positives = 105/169 (62%)

Query:    36 DVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKR 95
             DVA++K  I +PP E   ++SKAL VV+K P  E PA  K    S++RD  LA +  EKR
Sbjct:    48 DVAEEK--IQNPPPEQIFDDSKALTVVEK-P-VEEPAPAKPASASLDRDVKLADLSKEKR 103

Query:    96 ISLIRAWEESEKSQAEN--------------NRKAAVXXXXXXXXXXXXXXXXXYVEKMK 141
             +S +RAWEESEKS+AEN              ++KAAV                 Y E+MK
Sbjct:   104 LSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMK 163

Query:   142 NKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 190
             NK+A IHKEAEE+RAMIEAKRGED+LKAEE AAKYRATG  PK    CF
Sbjct:   164 NKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2101303 AT3G48940 "AT3G48940" [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 85/161 (52%), Positives = 106/161 (65%)

Query:    45 PSPPA-EDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWE 103
             PSPP+ E+K ++SKA+ +V  A E   P  +K   GSV+RDAVL R+E +KRISLI+AWE
Sbjct:    19 PSPPSKEEKSDDSKAIVLVVAAKE---PTEDKKV-GSVHRDAVLVRLEQDKRISLIKAWE 74

Query:   104 ESEKSQAEN--------------NRKAAVXXXXXXXXXXXXXXXXXYVEKMKNKMALIHK 149
             E+EKS+ EN              ++KA+V                 Y E+MKNK+A IHK
Sbjct:    75 EAEKSKVENKAQKKISSVGAWENSKKASVEAELKKIEEQLNKKKAHYTEQMKNKIAQIHK 134

Query:   150 EAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 190
             EAEEKRAM EAKRGED+LKAEE+AAKYRATG+AP KL   F
Sbjct:   135 EAEEKRAMTEAKRGEDVLKAEEMAAKYRATGTAPTKLFGFF 175

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2050704 AT2G45820 "AT2G45820" [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 86/169 (50%), Positives = 106/169 (62%)

Query:    36 DVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKR 95
             +VAD+K  I +PP    P ESKALAVV+K  E   P  +K++ GS +RD +LA +E EK+
Sbjct:    30 EVADEK--IHNPP----PVESKALAVVEKPIEEHTP--KKASSGSADRDVILADLEKEKK 81

Query:    96 ISLIRAWEESEKSQAEN--------------NRKAAVXXXXXXXXXXXXXXXXXYVEKMK 141
              S I+AWEESEKS+AEN              ++KAAV                 Y EKMK
Sbjct:    82 TSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMK 141

Query:   142 NKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 190
             NK+A IHK AEEKRAM+EAK+GE+LLKAEE+ AKYRATG  PK    CF
Sbjct:   142 NKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVVPKATCGCF 190

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2127058 AT4G00670 "AT4G00670" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 31/101 (30%), Positives = 58/101 (57%)

Query:    91 ETEKRISLIRAWEESEKSQAENNRKAAVXXXXXXXXXXXXXXXXXYVEKMKNKMALIHKE 150
             +T+K++  I  WE+ + ++ E+   A +                   EK++N+ A +H +
Sbjct:    31 KTQKKLLDISGWEKKKTTKIESEL-ARIQRKMDSKKMEKS-------EKLRNEKAAVHAK 82

Query:   151 AEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKL-LSCF 190
             A++K+A ++ +R +++L AEE AA+++A G  PKK  LSCF
Sbjct:    83 AQKKKADVQTRRAQEILDAEEAAARFQAAGKIPKKSSLSCF 123

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2051673 AT2G02170 "AT2G02170" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 9.6e-09, P = 9.6e-09
 Identities = 39/115 (33%), Positives = 52/115 (45%)

Query:    77 TEGSVNRDAVLARVETEKRISLIRAWEESEKSQA-ENNRKAAVXXXXXXXXXXXXXXXXX 135
             T  SV+     A  E EK   + R   E  K QA EN++KA                   
Sbjct:   368 TSKSVSEARATAWEEAEKAKHMARFRREEMKIQAWENHQKAKSEAEMKKTEVKVERIKGR 427

Query:   136 YVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 190
               +++  K+A I ++AEEKRA  EAK+     K E+ A + R TG  P  L SCF
Sbjct:   428 AQDRLMKKLATIERKAEEKRAAAEAKKDHQAAKTEKQAEQIRRTGKVPSLLFSCF 482

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2054376 AT2G41870 "AT2G41870" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 42/150 (28%), Positives = 67/150 (44%)

Query:    51 DKPEESKALAVV-DKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQ 109
             D  EE+  LA+V D+ P +    G  +  G     + + RV+ E+  + I AW+ ++ ++
Sbjct:   118 DHEEETNPLAIVPDQYPGSGLDPGSDNGPGQSRVGSTVQRVKREEVEAKITAWQTAKLAK 177

Query:   110 AENN--RKAAVXXXXXXXXXXXXXXXXXYVE------------KMKNKMALIHKEAEEKR 155
               N   R+ AV                  +E            K +N +A   ++AEE+R
Sbjct:   178 INNRFKREDAVINGWFNEQVNKANSWMKKIERKLEERKAKAMEKTQNNVAKAQRKAEERR 237

Query:   156 AMIEAKRGEDLLKAEELAAKYRATGSAPKK 185
             A  EAKRG ++ K  E+A   RA G  P K
Sbjct:   238 ATAEAKRGTEVAKVVEVANLMRALGRPPAK 267

GO:0003677 "DNA binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2103508 AT3G57540 "AT3G57540" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 0.00045, P = 0.00045
 Identities = 21/49 (42%), Positives = 31/49 (63%)

Query:   137 VEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKK 185
             +EK +NK+A   ++AEE+RA  E KRG ++ +  E+A   RA G  P K
Sbjct:   241 MEKTQNKVAKAQRKAEERRATAEGKRGTEVARVLEVANLMRAVGRPPAK 289


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.305   0.122   0.321    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      192       141   0.00091  102 3  10 23  0.42    32
                                                     30  0.47    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  164 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.88u 0.10s 24.98t   Elapsed:  00:00:03
  Total cpu time:  24.88u 0.10s 24.98t   Elapsed:  00:00:03
  Start:  Sat May 11 00:26:34 2013   End:  Sat May 11 00:26:37 2013

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P93788	REMO_SOLTU	No assigned EC number	0.6398	0.9218	0.8939	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_XV0452 hypothetical protein (202 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	192
pfam03763	112	pfam03763, Remorin_C, Remorin, C-terminal region	7e-21
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.001
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.002
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	0.004

>gnl|CDD|190741 pfam03763, Remorin_C, Remorin, C-terminal region

 Score = 82.8 bits (205), Expect = 7e-21
 Identities = 60/111 (54%), Positives = 71/111 (63%), Gaps = 14/111 (12%)

Query: 90  VETEKRISLIRAWEESEKSQA--------------ENNRKAAVEAELKKIEEQLEKKKAE 135
            +  +  S   AWEE+EK++               EN +KA  EAELKKIE +LEKKKAE
Sbjct: 1   SKKSEAESRADAWEEAEKAKINNKYQREEAKIQAWENKKKAKAEAELKKIERKLEKKKAE 60

Query: 136 YVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKL 186
             EK+KNK+A  HK+AEEKRA  EAKRGE+  KAEE AAK RATG  P KL
Sbjct: 61  AAEKLKNKLAAAHKKAEEKRATAEAKRGEEEAKAEEKAAKIRATGKLPSKL 111

Remorins are plant-specific plasma membrane-associated proteins. In tobacco remorin co-purifies with lipid rafts. Most remorins have a variable, proline-rich C-half and a more conserved N-half that is predicted to form coiled coils. Consistent with this, circular dichroism studies have demonstrated that much of the protein is alpha-helical. Remorins exist in plasma membrane preparations as oligomeric structures and form filaments in vitro. The proteins can bind polyanions including the extracellular matrix component oligogalacturonic acid (OGA). In vitro, remorin in plasma membrane preparations is phosphorylated (principally on threonine residues) in the presence of OGA and thus co-purifies with a protein kinases(s). The biological functions of remorins are unknown but roles as components of the membrane/cytoskeleton are possible. Length = 112

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 38.7 bits (91), Expect = 0.001
 Identities = 18/82 (21%), Positives = 21/82 (25%), Gaps = 4/82 (4%)

Query: 2   AEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALAV 61
                             P +  PAAPA A P           P  PA      +   A 
Sbjct: 44  PTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPA----APPKPAAAAAAAAAPAAP 99

Query: 62  VDKAPEAEPPAGEKSTEGSVNR 83
              A  A P A     E +  R
Sbjct: 100 PAAAAAAAPAAAAVEDEVTPLR 121

Length = 1228

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 6/96 (6%)

Query: 2   AEEEPKKLETETPTEPPPPPSTEPAAPA-----AAEPPKDVADDKTVIPSPPAEDKPEES 56
           A        T  P+  P   +     P       A PP               E  P+ +
Sbjct: 373 AAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLT 432

Query: 57  KALAVVDKAPEAEPPAGEKSTEGSVNRD-AVLARVE 91
           +A   VD+ P+  PPA  K  E ++  D  VL ++E
Sbjct: 433 RAAIPVDEKPKYTPPAPPKEEEKALIADGDVLEQLE 468

Length = 585

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 22/92 (23%), Positives = 28/92 (30%), Gaps = 9/92 (9%)

Query: 9   LETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALAVVDKAPEA 68
            E +T   PP       AA  A +   +        P PPA  KP    A       P  
Sbjct: 116 SEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAA-----AKPPE 170

Query: 69  EPPAGEKSTEGSVNRDAVLARVETEKRISLIR 100
             PA +         D      ET   +S +R
Sbjct: 171 PAPAAKPPPTPVARAD----PRETRVPMSRMR 198

Length = 418

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	192
PF03763	111	Remorin_C: Remorin, C-terminal region ; InterPro:	99.96
PF03766	57	Remorin_N: Remorin, N-terminal region ; InterPro:	99.23
PF03763	111	Remorin_C: Remorin, C-terminal region ; InterPro:	97.86

>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides

Probab=99.96  E-value=2.1e-29  Score=196.20  Aligned_cols=101  Identities=54%  Similarity=0.724  Sum_probs=88.2

Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029522           77 TEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENNRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRA  156 (192)
Q Consensus        77 ~~gs~~rd~~lakve~Ekr~akI~AWEeaEKaKa~n~kKAKAEA~mrKiE~KLEkkRA~a~EKm~nKiA~a~kkAEekRA  156 (192)
                      .|.-.+...+..||+++.  ++|.+||        |+||++++++|+++|++||++|++++|+|+|+|+.||++|+++|+
T Consensus        11 aWe~ae~aK~~~r~~ree--~~I~aWE--------n~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra   80 (111)
T PF03763_consen   11 AWEEAEKAKINNRYEREE--AKIQAWE--------NLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRA   80 (111)
T ss_pred             HHHHHHHHHHHHHHHHHH--hHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555666666555  7777777        788899999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhcCCCCCCCc
Q 029522          157 MIEAKRGEDLLKAEELAAKYRATGSAPKKLL  187 (192)
Q Consensus       157 ~aEAkr~ee~~Ka~EkA~kiRaTGk~P~k~~  187 (192)
                      +++++|+++++++.++|++||+||++|++||
T Consensus        81 ~aea~r~~~~~k~~ekA~~~R~tG~~P~~~f  111 (111)
T PF03763_consen   81 AAEARRGEEIAKAEEKAAKIRATGKVPSKCF  111 (111)
T ss_pred             HHHHHHhhHHHhHHHHHHHHHhCCCCCcccC
Confidence            9999999999999999999999999997743

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

>PF03766 Remorin_N: Remorin, N-terminal region ; InterPro: IPR005518 Remorin binds both simple and complex galaturonides

Probab=99.23  E-value=7.3e-12  Score=88.48  Aligned_cols=52  Identities=67%  Similarity=1.069  Sum_probs=44.6

Q ss_pred             CCccccCCCCCCCCCCCCCccccceeeecCC-CCCCCCCCCCCCCCchhhHHHHHHH
Q 029522           35 KDVADDKTVIPSPPAEDKPEESKALAVVDKA-PEAEPPAGEKSTEGSVNRDAVLARV   90 (192)
Q Consensus        35 ~~~~~e~~~~p~p~~~~~~~~skal~~v~~~-~~~~~~~~~~~~~gs~~rd~~lakv   90 (192)
                      +|++++++++|||. +.+.||||||+||++. ++   +..+++++||+|||.+|++|
T Consensus         5 ~dva~ek~~~PpP~-~~k~ddSKAl~vVek~~~e---pa~eK~s~GS~dRDa~LA~v   57 (57)
T PF03766_consen    5 KDVAEEKSVIPPPA-EEKPDDSKALVVVEKKVPE---PAEEKPSEGSIDRDAALARV   57 (57)
T ss_pred             hhhccccCCCCCCC-CCCCCccceEEEeeccCCC---ccccccCCCcchhhhhhhcC
Confidence            78999999988776 6778999999999985 45   46678889999999999985

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides

Probab=97.86  E-value=0.00016  Score=56.69  Aligned_cols=20  Identities=35%  Similarity=0.542  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHH
Q 029522           92 TEKRISLIRAWEESEKSQAE  111 (192)
Q Consensus        92 ~Ekr~akI~AWEeaEKaKa~  111 (192)
                      .++++++|.+||+++++|+.
T Consensus         2 ~~~~~a~a~aWe~ae~aK~~   21 (111)
T PF03763_consen    2 KEEVEAKADAWEEAEKAKIN   21 (111)
T ss_pred             cHHHHhHHHHHHHHHHHHHH
Confidence            35678999999999999996

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	192
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	4e-06
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-05
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 45.3 bits (106), Expect = 4e-06
 Identities = 22/142 (15%), Positives = 39/142 (27%)

Query: 2   AEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALAV 61
             E  K+ E E   E     +   A  +    P       T      +  KPEE  +  V
Sbjct: 45  TNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVV 104

Query: 62  VDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENNRKAAVEAE 121
            +       P  +K TE            +     +      + +  +         E +
Sbjct: 105 AETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIK 164

Query: 122 LKKIEEQLEKKKAEYVEKMKNK 143
               EE L+ +     +   N+
Sbjct: 165 FNSWEELLKWEPGAREDDAINR 186

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 43.0 bits (100), Expect = 3e-05
 Identities = 30/188 (15%), Positives = 55/188 (29%), Gaps = 5/188 (2%)

Query: 4   EEPKKLETETPTEPPPPPSTEPAAPAAAEPPK--DVADDKTVIPSPPAEDKPEESKALAV 61
           EE    E            +E +   A +  +     ++K       A      S A   
Sbjct: 22  EETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNE 81

Query: 62  VDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENNRKAAVEAE 121
                 AE  +  K  E +    A     E + +       +    +Q +   ++   AE
Sbjct: 82  AATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGD---ESKPAAE 138

Query: 122 LKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGS 181
             K E++++    +  EK      +     EE        R +D +    +    R TG 
Sbjct: 139 ANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGH 198

Query: 182 APKKLLSC 189
              +  S 
Sbjct: 199 LVNEKASK 206

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 41.9 bits (97), Expect = 6e-05
 Identities = 24/157 (15%), Positives = 47/157 (29%), Gaps = 5/157 (3%)

Query: 2   AEEEPKKLETETPT-EPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALA 60
           A  E     TE  + E     +            ++  +    + +      P  ++A  
Sbjct: 25  AVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAAT 84

Query: 61  V----VDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENNRKA 116
                   A + E  A E   E         +  ETE +       +ES+ +   N  + 
Sbjct: 85  TETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEK 144

Query: 117 AVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEE 153
            V+ ++ K  E+  K K       +  +       E+
Sbjct: 145 EVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGARED 181

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 8e-04
 Identities = 32/201 (15%), Positives = 56/201 (27%), Gaps = 67/201 (33%)

Query: 35  KDVADD-----KTVIPSPPAED--KPEESKAL--AVVDKAPEAEPPAGEKSTEGSVNRDA 85
           K V D       T I          P+E K+L    +D  P+  P           N   
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT-----TNP-- 327

Query: 86  VLARVETEKRISLIRA-----------WEESEKSQAENNRKAAVE----AELK------- 123
                     +S+I             W+     +     ++++     AE +       
Sbjct: 328 -RR-------LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

Query: 124 ------KIEEQL-----EKKKAEYVEKMKNKMA---LIHKEAEEKRAMIEAKRGEDLLKA 169
                  I   L            V  + NK+    L+ K+ +E    I +   E  +K 
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439

Query: 170 EELAAKYRATGSAPKKLLSCF 190
           E   A +R        ++  +
Sbjct: 440 ENEYALHR-------SIVDHY 453

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00