Citrus Sinensis ID: 029546

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-
MGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIHNKAIPLSEHLEKNI
ccccccccccccccccccccEEEccccccccEEccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHccccEEEcccccEEEEcccEEEEEEEEEEcccccccccccccccccccccccccccccccEEccccHHcccccccccccccccHHHHHHHHHHHHHHHHHHcccEEEEccccccHHHHccc
ccccccHHHHccccccccccEEEEccccEEEEcccccEEEEEEEHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccEEEEEEEEEEEcEEEcEEEEEccccccccccccccccccccHEEHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEcccccccHHHccccc
mgtggseeylnfdlkdppfqvyrterggevtyhgpgqlvmYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASrvegltgvwvgdQKLAAIGIRVSQWIAYHGLAlnvttdltpfrwivpcgiqnrhvGSIKgllgesqsltaefrhpddckliDIAHNSLIKEFSEVFQLeihnkaiplsehlekni
mgtggseeylnfdlkdpPFQVYRTERGgevtyhgpgqLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKasrvegltgvwvgdQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIhnkaiplsehlekni
MGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIHNKAIPLSEHLEKNI
*********LNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIHNKAI**********
*G*GGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIHNKA***********
MGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIHNKAIPLSEHLEKNI
*****SEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIHNKAIPLSEH*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIHNKAIPLSEHLEKNI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query191 2.2.26 [Sep-21-2011]
Q948J9278 Plastidial lipoyltransfer yes no 0.921 0.633 0.741 1e-75
P0C7R2280 Putative lipoyltransferas no no 0.926 0.632 0.708 2e-73
Q5N180233 Octanoyltransferase OS=Sy yes no 0.853 0.699 0.508 9e-44
Q31KN6233 Octanoyltransferase OS=Sy yes no 0.853 0.699 0.508 9e-44
Q8YSA4221 Octanoyltransferase OS=No yes no 0.848 0.733 0.494 1e-42
Q3M698221 Octanoyltransferase OS=An yes no 0.837 0.723 0.5 2e-42
Q8DKM7226 Octanoyltransferase OS=Th yes no 0.874 0.738 0.469 1e-40
P74519227 Octanoyltransferase OS=Sy N/A no 0.827 0.696 0.494 8e-40
Q10ZL5221 Octanoyltransferase OS=Tr yes no 0.701 0.606 0.552 1e-39
B2IVM2230 Octanoyltransferase OS=No yes no 0.701 0.582 0.537 2e-39
>sp|Q948J9|LIP2P_ARATH Plastidial lipoyltransferase 2 OS=Arabidopsis thaliana GN=LIP2p PE=2 SV=1 Back     alignment and function desciption
 Score =  281 bits (720), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 135/182 (74%), Positives = 154/182 (84%), Gaps = 6/182 (3%)

Query: 1   MGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRAL 60
           MGT  +E+YLNFD+KD PF VYRTERGGEVTYHGPGQLVMYPIINLRNH+MDLHWYLR L
Sbjct: 96  MGTASTEDYLNFDIKDAPFNVYRTERGGEVTYHGPGQLVMYPIINLRNHEMDLHWYLRML 155

Query: 61  EEVAIRVL-STFSIKASRVEGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFR 119
           EE+ IRVL STFSIKASR++GLTGVWVG+QK+AAIGIRVS+WI YHGLALNVTTDLTPF 
Sbjct: 156 EEIVIRVLSSTFSIKASRLDGLTGVWVGNQKVAAIGIRVSKWITYHGLALNVTTDLTPFN 215

Query: 120 WIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIHNK 179
           WIVPCGI++R VG+IKGLL +      E    DD +LIDI H SL+KEFSE FQL+I  +
Sbjct: 216 WIVPCGIRDRKVGNIKGLLED-----GEHGMVDDLRLIDIVHESLLKEFSEAFQLQIEKQ 270

Query: 180 AI 181
            +
Sbjct: 271 TV 272
Catalyzes the transfer of the endogenously synthesized lipoate to apoproteins, creating an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoate-dependent enzymes. Utilizes lipoyl-acyl-carrier-protein as a source of lipoyl groups, although octanoyl groups from octanoyl-ACP can also be transferred to the lipoyl domain of apoproteins.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: -
>sp|P0C7R2|LIPBL_ARATH Putative lipoyltransferase-like protein, chloroplastic OS=Arabidopsis thaliana GN=At1g47578 PE=3 SV=1 Back     alignment and function description
>sp|Q5N180|LIPB_SYNP6 Octanoyltransferase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=lipB PE=3 SV=1 Back     alignment and function description
>sp|Q31KN6|LIPB_SYNE7 Octanoyltransferase OS=Synechococcus elongatus (strain PCC 7942) GN=lipB PE=3 SV=1 Back     alignment and function description
>sp|Q8YSA4|LIPB_NOSS1 Octanoyltransferase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=lipB PE=3 SV=1 Back     alignment and function description
>sp|Q3M698|LIPB_ANAVT Octanoyltransferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=lipB PE=3 SV=2 Back     alignment and function description
>sp|Q8DKM7|LIPB_THEEB Octanoyltransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=lipB PE=3 SV=1 Back     alignment and function description
>sp|P74519|LIPB_SYNY3 Octanoyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=lipB PE=3 SV=1 Back     alignment and function description
>sp|Q10ZL5|LIPB_TRIEI Octanoyltransferase OS=Trichodesmium erythraeum (strain IMS101) GN=lipB PE=3 SV=1 Back     alignment and function description
>sp|B2IVM2|LIPB_NOSP7 Octanoyltransferase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=lipB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query191
225436865290 PREDICTED: biotin/lipoate A/B protein li 0.958 0.631 0.765 8e-78
224067300 295 predicted protein [Populus trichocarpa] 0.942 0.610 0.791 2e-76
297802928288 lipoyltransferase [Arabidopsis lyrata su 0.926 0.614 0.743 5e-74
449434538 301 PREDICTED: plastidial lipoyltransferase 0.973 0.617 0.742 5e-74
18417727278 Plastidial lipoyltransferase 2 [Arabidop 0.921 0.633 0.741 6e-74
255577839 303 lipoate-protein ligase B, putative [Rici 0.989 0.623 0.716 2e-73
334183114280 biotin/lipoate A/B protein ligase family 0.926 0.632 0.708 9e-72
5668803 571 F16N3.14 [Arabidopsis thaliana] 0.926 0.309 0.708 1e-71
356509700 293 PREDICTED: plastidial lipoyltransferase 0.947 0.617 0.693 1e-70
356567367 306 PREDICTED: plastidial lipoyltransferase 0.947 0.591 0.684 5e-69
>gi|225436865|ref|XP_002272498.1| PREDICTED: biotin/lipoate A/B protein ligase family-like [Vitis vinifera] gi|296086674|emb|CBI32309.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  295 bits (754), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 144/188 (76%), Positives = 162/188 (86%), Gaps = 5/188 (2%)

Query: 1   MGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRAL 60
           +GTG SEEY+NF++ D P+ VYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRAL
Sbjct: 102 LGTGSSEEYMNFEIIDAPYDVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRAL 161

Query: 61  EEVAIRVLST-FSIKASRVEGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFR 119
           EEV IRVLST FSIKASR+EG TGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPF+
Sbjct: 162 EEVVIRVLSTTFSIKASRLEGFTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFQ 221

Query: 120 WIVPCGIQNRHVGSIKGLLGE----SQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLE 175
            IVPCGI+NR +GSIKG+LGE    ++   ++  + DD +LIDI H SLIKEFSEVFQLE
Sbjct: 222 LIVPCGIRNRKIGSIKGILGEFGSSNRCGASDINYIDDFQLIDITHKSLIKEFSEVFQLE 281

Query: 176 IHNKAIPL 183
           +  K I +
Sbjct: 282 LALKPISM 289

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224067300|ref|XP_002302455.1| predicted protein [Populus trichocarpa] gi|222844181|gb|EEE81728.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297802928|ref|XP_002869348.1| lipoyltransferase [Arabidopsis lyrata subsp. lyrata] gi|297315184|gb|EFH45607.1| lipoyltransferase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449434538|ref|XP_004135053.1| PREDICTED: plastidial lipoyltransferase 2-like [Cucumis sativus] gi|449506341|ref|XP_004162721.1| PREDICTED: plastidial lipoyltransferase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|18417727|ref|NP_567866.1| Plastidial lipoyltransferase 2 [Arabidopsis thaliana] gi|75164691|sp|Q948J9.1|LIP2P_ARATH RecName: Full=Plastidial lipoyltransferase 2; AltName: Full=Lipoate-protein ligase 2p; AltName: Full=Lipoyl-[acyl-carrier-protein]-protein-N- lipoyltransferase 2p gi|15887052|dbj|BAB69449.1| lipoyltransferase [Arabidopsis thaliana] gi|62320326|dbj|BAD94675.1| putative protein [Arabidopsis thaliana] gi|90186250|gb|ABD91501.1| At4g31050 [Arabidopsis thaliana] gi|332660451|gb|AEE85851.1| Plastidial lipoyltransferase 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255577839|ref|XP_002529793.1| lipoate-protein ligase B, putative [Ricinus communis] gi|223530737|gb|EEF32607.1| lipoate-protein ligase B, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|334183114|ref|NP_001185164.1| biotin/lipoate A/B protein ligase family protein [Arabidopsis thaliana] gi|193806055|sp|P0C7R2.1|LIPBL_ARATH RecName: Full=Putative lipoyltransferase-like protein, chloroplastic; AltName: Full=Lipoate-protein ligase-like protein; AltName: Full=Lipoyl-[acyl-carrier-protein]-protein-N- lipoyltransferase-like protein; Flags: Precursor gi|332194068|gb|AEE32189.1| biotin/lipoate A/B protein ligase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|5668803|gb|AAD46029.1|AC007519_14 F16N3.14 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356509700|ref|XP_003523584.1| PREDICTED: plastidial lipoyltransferase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356567367|ref|XP_003551892.1| PREDICTED: plastidial lipoyltransferase 2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query191
TAIR|locus:2126609278 AT4G31050 [Arabidopsis thalian 0.921 0.633 0.741 2.6e-70
TIGR_CMR|NSE_0100209 NSE_0100 "lipoate-protein liga 0.753 0.688 0.474 3e-30
ZFIN|ZDB-GENE-060312-18224 zgc:136925 "zgc:136925" [Danio 0.670 0.571 0.492 2.5e-26
TIGR_CMR|GSU_2434227 GSU_2434 "lipoate-protein liga 0.591 0.497 0.495 6.6e-26
FB|FBgn0037251234 CG9804 [Drosophila melanogaste 0.764 0.623 0.377 1.8e-25
TIGR_CMR|ECH_0371214 ECH_0371 "lipoate-protein liga 0.696 0.621 0.418 1.6e-24
TAIR|locus:2197818235 LIP2 "lipoyltransferase 2" [Ar 0.607 0.493 0.444 8.7e-24
UNIPROTKB|Q10404230 lipB "Octanoyltransferase" [My 0.628 0.521 0.475 2.3e-23
POMBASE|SPAC4F10.05c219 SPAC4F10.05c "mitochondrial li 0.691 0.602 0.413 7.8e-23
TIGR_CMR|CBU_1265242 CBU_1265 "lipoate-protein liga 0.643 0.508 0.420 1.3e-22
TAIR|locus:2126609 AT4G31050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 135/182 (74%), Positives = 154/182 (84%)

Query:     1 MGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRAL 60
             MGT  +E+YLNFD+KD PF VYRTERGGEVTYHGPGQLVMYPIINLRNH+MDLHWYLR L
Sbjct:    96 MGTASTEDYLNFDIKDAPFNVYRTERGGEVTYHGPGQLVMYPIINLRNHEMDLHWYLRML 155

Query:    61 EEVAIRVLS-TFSIKASRVEGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFR 119
             EE+ IRVLS TFSIKASR++GLTGVWVG+QK+AAIGIRVS+WI YHGLALNVTTDLTPF 
Sbjct:   156 EEIVIRVLSSTFSIKASRLDGLTGVWVGNQKVAAIGIRVSKWITYHGLALNVTTDLTPFN 215

Query:   120 WIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIHNK 179
             WIVPCGI++R VG+IKGLL +      E    DD +LIDI H SL+KEFSE FQL+I  +
Sbjct:   216 WIVPCGIRDRKVGNIKGLLEDG-----EHGMVDDLRLIDIVHESLLKEFSEAFQLQIEKQ 270

Query:   180 AI 181
              +
Sbjct:   271 TV 272
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0006464 "cellular protein modification process" evidence=IEA;ISS
GO:0009107 "lipoate biosynthetic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0016415 "octanoyltransferase activity" evidence=IEA
GO:0017118 "lipoyltransferase activity" evidence=ISS
GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA
TIGR_CMR|NSE_0100 NSE_0100 "lipoate-protein ligase B" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060312-18 zgc:136925 "zgc:136925" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2434 GSU_2434 "lipoate-protein ligase B" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
FB|FBgn0037251 CG9804 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0371 ECH_0371 "lipoate-protein ligase B" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TAIR|locus:2197818 LIP2 "lipoyltransferase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q10404 lipB "Octanoyltransferase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
POMBASE|SPAC4F10.05c SPAC4F10.05c "mitochondrial lipoate-protein ligase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1265 CBU_1265 "lipoate-protein ligase B" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q31KN6LIPB_SYNE72, ., 3, ., 1, ., 1, 8, 10.50840.85340.6995yesno
Q5N180LIPB_SYNP62, ., 3, ., 1, ., 1, 8, 10.50840.85340.6995yesno
Q10ZL5LIPB_TRIEI2, ., 3, ., 1, ., 1, 8, 10.55220.70150.6063yesno
Q948J9LIP2P_ARATH2, ., 3, ., 1, ., -0.74170.92140.6330yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.10.766
3rd Layer2.3.1.1810.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.II.4099.1
hypothetical protein (233 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pg.C_LG_XIII000472
lipoic acid synthase (376 aa)
• •  •• 0.976
eugene3.00050253
lipoic acid synthase (385 aa)
• •  •• 0.975
fgenesh4_pg.C_scaffold_120000064
lipoic acid synthase (397 aa)
• •  •• 0.973
eugene3.107780001
Predicted protein (326 aa)
• •  •• 0.888
eugene3.29520003
annotation not avaliable (742 aa)
      • 0.534
grail3.3134000101
Predicted protein (100 aa)
•     • 0.517
eugene3.09070007
Predicted protein (210 aa)
•     • 0.474
gw1.VII.2254.1
annotation not avaliable (372 aa)
• •     0.429
LPD1
precursor of dehydrogenase dihydrolipoamide dehydrogenase 1 (EC-1.8.1.4) (511 aa)
•     • 0.420

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query191
COG0321221 COG0321, LipB, Lipoate-protein ligase B [Coenzyme 1e-65
PRK14344223 PRK14344, PRK14344, lipoate-protein ligase B; Prov 2e-59
TIGR00214184 TIGR00214, lipB, lipoate-protein ligase B 3e-59
PRK14341213 PRK14341, PRK14341, lipoate-protein ligase B; Prov 5e-48
PRK14345234 PRK14345, PRK14345, lipoate-protein ligase B; Prov 8e-41
PRK14342213 PRK14342, PRK14342, lipoate-protein ligase B; Prov 1e-39
PRK14347209 PRK14347, PRK14347, lipoate-protein ligase B; Prov 2e-36
PRK14348221 PRK14348, PRK14348, lipoate-protein ligase B; Prov 1e-35
PRK14343235 PRK14343, PRK14343, lipoate-protein ligase B; Prov 4e-29
PRK14349220 PRK14349, PRK14349, lipoate-protein ligase B; Prov 5e-29
PRK14346230 PRK14346, PRK14346, lipoate-protein ligase B; Prov 7e-29
pfam03099124 pfam03099, BPL_LplA_LipB, Biotin/lipoate A/B prote 6e-16
>gnl|CDD|223398 COG0321, LipB, Lipoate-protein ligase B [Coenzyme metabolism] Back     alignment and domain information 
 Score =  200 bits (511), Expect = 1e-65
 Identities = 69/182 (37%), Positives = 101/182 (55%), Gaps = 18/182 (9%)

Query: 2   GTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALE 61
           G  G  E+L   L      V +T+RGG+VTYHGPGQLV YPI++L+  K+D+  Y+RALE
Sbjct: 56  GQAGKAEHL---LMPDDIPVVQTDRGGQVTYHGPGQLVAYPILDLKRPKLDVREYVRALE 112

Query: 62  EVAIRVLSTFSIKASRVEGLTGVWV-GDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRW 120
           +  I  L+ + I+A R     GVWV  ++K+AAIGIR+ + + +HGLALNV  DL+PF  
Sbjct: 113 QAVINTLAEYGIEAERRPDRPGVWVEEERKIAAIGIRIRRGVTFHGLALNVNMDLSPFNR 172

Query: 121 IVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIHNKA 180
           IVPCG     V S+            +   P     +  A   L+  F+++   ++    
Sbjct: 173 IVPCGYAGMEVTSLS-----------DLGPPVTVDEVAKA---LVAAFAKLLGPKLIVAE 218

Query: 181 IP 182
           + 
Sbjct: 219 LT 220

Length = 221
>gnl|CDD|237683 PRK14344, PRK14344, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|232877 TIGR00214, lipB, lipoate-protein ligase B Back     alignment and domain information
>gnl|CDD|237680 PRK14341, PRK14341, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|184638 PRK14345, PRK14345, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|237681 PRK14342, PRK14342, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|172823 PRK14347, PRK14347, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|172824 PRK14348, PRK14348, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|237682 PRK14343, PRK14343, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|172825 PRK14349, PRK14349, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|237684 PRK14346, PRK14346, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|217367 pfam03099, BPL_LplA_LipB, Biotin/lipoate A/B protein ligase family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 191
TIGR00214184 lipB lipoate-protein ligase B. Involved in lipoate 100.0
PRK14344223 lipoate-protein ligase B; Provisional 100.0
PRK14342213 lipoate-protein ligase B; Provisional 100.0
COG0321221 LipB Lipoate-protein ligase B [Coenzyme metabolism 100.0
PRK14348221 lipoate-protein ligase B; Provisional 100.0
PRK14345234 lipoate-protein ligase B; Provisional 100.0
PRK14343235 lipoate-protein ligase B; Provisional 100.0
PRK14341213 lipoate-protein ligase B; Provisional 100.0
PRK14349220 lipoate-protein ligase B; Provisional 100.0
PRK14347209 lipoate-protein ligase B; Provisional 100.0
PRK14346230 lipoate-protein ligase B; Provisional 100.0
KOG0325226 consensus Lipoyltransferase [Energy production and 100.0
PRK08330236 biotin--protein ligase; Provisional 99.63
PF03099125 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase f 99.47
PRK03822 338 lplA lipoate-protein ligase A; Provisional 99.35
COG0095248 LplA Lipoate-protein ligase A [Coenzyme metabolism 99.34
TIGR00545324 lipoyltrans lipoyltransferase and lipoate-protein 99.33
PRK14061 562 unknown domain/lipoate-protein ligase A fusion pro 99.2
PRK05935190 biotin--protein ligase; Provisional 98.71
COG0340238 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenz 98.54
TIGR00121237 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] 98.48
PTZ00275285 biotin-acetyl-CoA-carboxylase ligase; Provisional 98.38
PTZ00276245 biotin/lipoate protein ligase; Provisional 98.21
PRK11886319 bifunctional biotin--[acetyl-CoA-carboxylase] synt 98.16
PRK08477211 biotin--protein ligase; Provisional 97.97
PRK06955300 biotin--protein ligase; Provisional 97.7
PRK13325 592 bifunctional biotin--[acetyl-CoA-carboxylase] liga 97.66
KOG3159336 consensus Lipoate-protein ligase A [Coenzyme trans 96.24
KOG0325226 consensus Lipoyltransferase [Energy production and 95.76
PF04017183 DUF366: Domain of unknown function (DUF366); Inter 93.34
KOG1536649 consensus Biotin holocarboxylase synthetase/biotin 90.78
COG2029189 Uncharacterized conserved protein [Function unknow 90.67
>TIGR00214 lipB lipoate-protein ligase B Back     alignment and domain information 
Probab=100.00  E-value=1.1e-60  Score=395.19  Aligned_cols=159  Identities=42%  Similarity=0.793  Sum_probs=148.0

Q ss_pred             CCCCCCcccccCCCCCCCCeEEEcCcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCcceecCC
Q 029546            1 MGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEG   80 (191)
Q Consensus         1 lGr~~~~~~l~~~~~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~gi~a~~~~~   80 (191)
                      +||+++++|++.+....+++|++|+|||++|||||||||+|||+||+++++++++|++.||+++|++|++|||+++++++
T Consensus        26 ~G~~~~~~~l~~~~~~~~~~v~~~~RGG~iTyHGPGQLV~YpIl~L~~~~~~v~~yv~~lE~~~I~~l~~~gi~a~~~~~  105 (184)
T TIGR00214        26 QGQAGKTEHLLFDPDIPPAEVVQSERGGQVTYHGPGQQVMYVILDLKRFQLDVRWLVTQLEQTVIITLAELGIEGEPIAD  105 (184)
T ss_pred             CCCCCChhhccCCcCCCcceEEEeCCCCeeEEECCCeEEEEEEEEchhcCCCHHHHHHHHHHHHHHHHHHcCCceEEcCC
Confidence            69999999999654334677999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEeCCCeEEEecceEeCcEEEEeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCChhhhHHHH
Q 029546           81 LTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIA  160 (191)
Q Consensus        81 ~~GVwv~~~KIasiGv~i~~~vt~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~~~~~~v  160 (191)
                      .+|||++++||||||++++||+|||||||||++||++|+.|+|||++|..||||+++...          ++    +++|
T Consensus       106 ~~GVWv~~~KIasIGv~v~r~vt~HG~ALNv~~dL~~F~~I~PCGl~~~~vTSl~~~~~~----------~~----~~~v  171 (184)
T TIGR00214       106 ATGVWVEGKKVASLGIRVRRGCTFHGLALNINMDLSPFSHINPCGYAGREMGSLNQFLPG----------AT----VENV  171 (184)
T ss_pred             CCeEEecCCEEEEEEEEEeccEeecceEEEcCCCchHhccEEcCCCCCCcEeeHHHHcCC----------CC----HHHH
Confidence            999999999999999999999999999999999999999999999999999999876532          23    7899


Q ss_pred             HHHHHHHHHHhcc
Q 029546          161 HNSLIKEFSEVFQ  173 (191)
Q Consensus       161 ~~~l~~~F~~~F~  173 (191)
                      .+.++++|++.|+
T Consensus       172 ~~~~~~~f~~~f~  184 (184)
T TIGR00214       172 APLLIKAFAELLG  184 (184)
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999999985

Involved in lipoate biosynthesis as the main determinant of the lipoyl-protein ligase activity required for lipoylation of enzymes such as alpha-ketoacid dehydrogenases. Involved in activation and re-activation (following denaturation) of lipoyl-protein ligases (calcium ion-dependant process).
>PRK14344 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14342 lipoate-protein ligase B; Provisional Back     alignment and domain information
>COG0321 LipB Lipoate-protein ligase B [Coenzyme metabolism] Back     alignment and domain information
>PRK14348 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14345 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14343 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14341 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14349 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14347 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14346 lipoate-protein ligase B; Provisional Back     alignment and domain information
>KOG0325 consensus Lipoyltransferase [Energy production and conversion; Coenzyme transport and metabolism] Back     alignment and domain information
>PRK08330 biotin--protein ligase; Provisional Back     alignment and domain information
>PF03099 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase family This entry is just a subset of the Pfam family; InterPro: IPR004143 This domain is found in biotin protein ligase, lipoate-protein ligase A and B Back     alignment and domain information
>PRK03822 lplA lipoate-protein ligase A; Provisional Back     alignment and domain information
>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism] Back     alignment and domain information
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase Back     alignment and domain information
>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional Back     alignment and domain information
>PRK05935 biotin--protein ligase; Provisional Back     alignment and domain information
>COG0340 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism] Back     alignment and domain information
>TIGR00121 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] ligase region Back     alignment and domain information
>PTZ00275 biotin-acetyl-CoA-carboxylase ligase; Provisional Back     alignment and domain information
>PTZ00276 biotin/lipoate protein ligase; Provisional Back     alignment and domain information
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional Back     alignment and domain information
>PRK08477 biotin--protein ligase; Provisional Back     alignment and domain information
>PRK06955 biotin--protein ligase; Provisional Back     alignment and domain information
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed Back     alignment and domain information
>KOG3159 consensus Lipoate-protein ligase A [Coenzyme transport and metabolism] Back     alignment and domain information
>KOG0325 consensus Lipoyltransferase [Energy production and conversion; Coenzyme transport and metabolism] Back     alignment and domain information
>PF04017 DUF366: Domain of unknown function (DUF366); InterPro: IPR007162 This is an archaeal family of unknown function Back     alignment and domain information
>KOG1536 consensus Biotin holocarboxylase synthetase/biotin-protein ligase [Coenzyme transport and metabolism] Back     alignment and domain information
>COG2029 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query191
2qhs_A237 Structural Basis Of Octanoic Acid Recognition By Li 6e-29
2qht_A210 Structural Basis Of Octanoic Acid Recognition By Li 7e-29
1w66_A232 Structure Of A Lipoate-protein Ligase B From Mycoba 4e-25
>pdb|2QHS|A Chain A, Structural Basis Of Octanoic Acid Recognition By Lipoate-protein Ligase B Length = 237 Back     alignment and structure 
Iteration: 1

 Score =  123 bits (308), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 92/156 (58%), Gaps = 16/156 (10%)
Query: 19  FQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRV 78
           F++Y  ERGG+VTYHGPGQLV YPI  +     ++  +LR +EE  +RV + + I A   
Sbjct: 88  FELYWVERGGDVTYHGPGQLVGYPIFPVGR---EVRRFLRQIEEAIVRVAAGYGISAYPT 144
Query: 79  EGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLL 138
            G  GVWVG+ KL AIG+ V + +++HG ALNV TDL  F  IVPCG++ + V S++ LL
Sbjct: 145 PGYAGVWVGEDKLCAIGVAVKEGVSFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLEKLL 204
Query: 139 GESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQL 174
           G    +             + A   ++  F+EVF L
Sbjct: 205 GRKVPM-------------EEAKARVVAAFAEVFGL 227
>pdb|2QHT|A Chain A, Structural Basis Of Octanoic Acid Recognition By Lipoate-Protein Ligase B Length = 210 Back     alignment and structure
>pdb|1W66|A Chain A, Structure Of A Lipoate-protein Ligase B From Mycobacterium Tuberculosis Length = 232 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query191
2qhs_A237 Lipoyltransferase; globular protein; HET: OCA; 1.5 5e-73
1w66_A232 Lipoyltransferase; lipoate-protein ligase B, lipoi 9e-73
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A Length = 237 Back     alignment and structure
 Score =  219 bits (559), Expect = 5e-73
 Identities = 69/185 (37%), Positives = 102/185 (55%), Gaps = 19/185 (10%)

Query: 1   MGTGGSEEYLNFD---LKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYL 57
           +G   + E L F     ++  F++Y  ERGG+VTYHGPGQLV YPI  +     ++  +L
Sbjct: 67  LGRKATGENLLFPESWYRENGFELYWVERGGDVTYHGPGQLVGYPIFPVGR---EVRRFL 123

Query: 58  RALEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTP 117
           R +EE  +RV + + I A    G  GVWVG+ KL AIG+ V + +++HG ALNV TDL  
Sbjct: 124 RQIEEAIVRVAAGYGISAYPTPGYAGVWVGEDKLCAIGVAVKEGVSFHGFALNVNTDLND 183

Query: 118 FRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIH 177
           F  IVPCG++ + V S++ LLG                 ++ A   ++  F+EVF L   
Sbjct: 184 FTVIVPCGLKGKGVTSLEKLLGRKVP-------------MEEAKARVVAAFAEVFGLRPV 230

Query: 178 NKAIP 182
             ++ 
Sbjct: 231 EGSVH 235
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3 Length = 232 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query191
1w66_A232 Lipoyltransferase; lipoate-protein ligase B, lipoi 100.0
2qhs_A237 Lipoyltransferase; globular protein; HET: OCA; 1.5 100.0
2c8m_A262 Lipoate-protein ligase A; lipoylation; HET: LPA; 1 99.97
2p5i_A288 BH3822 protein; PFAM03099, structural genomics, PS 99.97
2p0l_A288 Lipoate-protein ligase A; PFAM, lopoate-protein li 99.97
1vqz_A 341 Lipoate-protein ligase, putative; class II AARS an 99.97
3a7r_A 337 Lipoate-protein ligase A; adenylate-forming enzyme 99.96
2e5a_A 347 Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 99.93
2dxu_A235 Biotin--[acetyl-COA-carboxylase] ligase; biotin bi 98.6
2eay_A233 Biotin [acetyl-COA-carboxylase] ligase; biotin bio 98.57
3rkx_A323 Biotin-[acetyl-COA-carboxylase] ligase; biotin pro 98.48
3rux_A270 BIRA bifunctional protein; biotin-protein ligase, 98.47
2ej9_A237 Putative biotin ligase; biotin biosynthesis, monom 98.45
1bia_A321 BIRA bifunctional protein; transcription regulatio 98.23
3bfm_A235 Biotin protein ligase-like protein of unknown FUN; 98.02
2ddz_A190 190AA long hypothetical protein; hexamer, structur 90.05
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3 Back     alignment and structure
Probab=100.00  E-value=2.9e-51  Score=347.86  Aligned_cols=160  Identities=38%  Similarity=0.624  Sum_probs=148.9

Q ss_pred             CCCCCCcccccCCCCCCCCeEEEcCcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCcceecCC
Q 029546            1 MGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEG   80 (191)
Q Consensus         1 lGr~~~~~~l~~~~~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~gi~a~~~~~   80 (191)
                      +||+++.++++    ..|++|++++|||++|||||||||+|||+||++ +.++++|++.||+++|++|+.|||+|+++++
T Consensus        57 iG~~q~~~~l~----~~gi~Vvr~~rGG~~tYHgPGQlv~Y~Il~l~~-~~~v~~~v~~le~~vI~~L~~~Gi~a~~~~g  131 (232)
T 1w66_A           57 AGRRTETHERP----IDGTPVVDTDRGGKITWHGPGQLVGYPIIGLAE-PLDVVNYVRRLEESLIQVCADLGLHAGRVDG  131 (232)
T ss_dssp             ECTTCCGGGSC----TTCCCCEECSSSSSEEEECTTEEEEEEECBBCS-SCCHHHHHHHHHHHHHHHHHHTTCCCEEETT
T ss_pred             eCCCCChhhhc----ccCCeEEEecCCCceEEECCCCeEEEEEEECCC-CCCHHHHHHHHHHHHHHHHHHcCCCeEecCC
Confidence            58999998865    458999999999999999999999999999988 8899999999999999999999999999899


Q ss_pred             CceeEeC---CCeEEEecceEeCcEEEEeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCChhhhH
Q 029546           81 LTGVWVG---DQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLI  157 (191)
Q Consensus        81 ~~GVwv~---~~KIasiGv~i~~~vt~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~~~~  157 (191)
                      .+||||+   ++||||+|+++++|+|+||+||||++||++|..|+|||+.++.||||+++++..         ++    +
T Consensus       132 ~~gV~v~~~~~rKIaaig~r~~~~vt~HG~aLNv~~dL~~f~~I~pcgi~~k~vtSl~~~lg~~---------~~----~  198 (232)
T 1w66_A          132 RSGVWLPGRPARKVAAIGVRVSRATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRT---------VT----V  198 (232)
T ss_dssp             EEEEEECSSSCEEEEEEEEEEETTEEEEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHHHTSC---------CC----H
T ss_pred             CCeEEecCCCCCEEEEeeeeeeCCEEEcceEEecCcChHHhcCccccccCCCceeeeHHHhCCC---------CC----H
Confidence            9999999   999999999999999999999999999999999999999999999999877653         34    7


Q ss_pred             HHHHHHHHHHHHHhccccccc
Q 029546          158 DIAHNSLIKEFSEVFQLEIHN  178 (191)
Q Consensus       158 ~~v~~~l~~~F~~~F~~~~~~  178 (191)
                      +++++.|.++|++.|+.++..
T Consensus       199 ~ev~~~l~~~f~~~~~~~~~~  219 (232)
T 1w66_A          199 DEVRATVAAAVCAALDGVLPV  219 (232)
T ss_dssp             HHHHHHHHHHHHHHHTTCCC-
T ss_pred             HHHHHHHHHHHHHHhCccccc
Confidence            899999999999999987654
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A Back     alignment and structure
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A Back     alignment and structure
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3 Back     alignment and structure
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3 Back     alignment and structure
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3 Back     alignment and structure
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A* Back     alignment and structure
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A Back     alignment and structure
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ... Back     alignment and structure
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A* Back     alignment and structure
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A* Back     alignment and structure
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A Back     alignment and structure
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii} Back     alignment and structure
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A* Back     alignment and structure
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP} Back     alignment and structure
>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; 2.24A {Pyrococcus horikoshii} SCOP: d.104.1.4 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 191
d1w66a1216 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycoba 1e-23
d2c8ma1256 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Ther 3e-18
d1vqza2241 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-te 3e-15
d1x2ga2246 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal do 3e-14
d2p5ia1265 d.104.1.3 (A:14-278) Hypothetical protein BH3822 { 4e-14
d2p0la1269 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Stre 1e-12
>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 216 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Lipoyltransferase LipB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 91.0 bits (225), Expect = 1e-23
 Identities = 62/174 (35%), Positives = 87/174 (50%), Gaps = 18/174 (10%)

Query: 3   TGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEE 62
           T G     +    D       T+RGG++T+HGPGQLV YPII L    +D+  Y+R LEE
Sbjct: 54  TAGRRTETHERPIDGTPV-VDTDRGGKITWHGPGQLVGYPIIGLAEP-LDVVNYVRRLEE 111

Query: 63  VAIRVLSTFSIKASRVEGLTGVWVGDQ---KLAAIGIRVSQWIAYHGLALNVTTDLTPFR 119
             I+V +   + A RV+G +GVW+  +   K+AAIG+RVS+    HG ALN   DL  F 
Sbjct: 112 SLIQVCADLGLHAGRVDGRSGVWLPGRPARKVAAIGVRVSRATTLHGFALNCDCDLAAFT 171

Query: 120 WIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQ 173
            IVPCGI +  V S+   LG + +             +D    ++         
Sbjct: 172 AIVPCGISDAAVTSLSAELGRTVT-------------VDEVRATVAAAVCAALD 212
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]} Length = 256 Back     information, alignment and structure
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 241 Back     information, alignment and structure
>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 246 Back     information, alignment and structure
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]} Length = 265 Back     information, alignment and structure
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus agalactiae [TaxId: 1311]} Length = 269 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query191
d1w66a1216 Lipoyltransferase LipB {Mycobacterium tuberculosis 100.0
d2c8ma1256 Lipoate-protein ligase A {Thermoplasma acidophilum 99.9
d1vqza2241 LplA-like protein SP1160, N-terminal domain {Strep 99.88
d1x2ga2246 Two-domain LplA, N-terminal domain {Escherichia co 99.85
d2p0la1269 Lipoate-protein ligase A {Streptococcus agalactiae 99.84
d2p5ia1265 Hypothetical protein BH3822 {Bacillus halodurans [ 99.83
d2zgwa2188 Biotin--[acetyl-CoA-carboxylase] ligase catalytic 99.07
d1biaa3207 Biotin repressor/biotin holoenzyme synthetase, cat 98.14
d2ddza1188 Uncharacterized protein PH0223 {Pyrococcus horikos 90.22
>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Lipoyltransferase LipB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.4e-56  Score=375.59  Aligned_cols=158  Identities=39%  Similarity=0.649  Sum_probs=146.9

Q ss_pred             CCCCCCcccccCCCCCCCCeEEEcCcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCcceecCC
Q 029546            1 MGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEG   80 (191)
Q Consensus         1 lGr~~~~~~l~~~~~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~gi~a~~~~~   80 (191)
                      +||++++++++.    .++||++|+|||++|||||||||+|||+||++ +.++++|++.||+++|++|++|||++.+.++
T Consensus        55 ~G~~~~~~~~~~----~~i~v~~tdRGG~vTyHGPGQlV~Ypil~l~~-~~~~~~~v~~le~~ii~~l~~~gi~~~~~~~  129 (216)
T d1w66a1          55 AGRRTETHERPI----DGTPVVDTDRGGKITWHGPGQLVGYPIIGLAE-PLDVVNYVRRLEESLIQVCADLGLHAGRVDG  129 (216)
T ss_dssp             ECTTCCGGGSCT----TCCCCEECSSSSSEEEECTTEEEEEEECBBCS-SCCHHHHHHHHHHHHHHHHHHTTCCCEEETT
T ss_pred             ecccCccccccc----cccceeecCCCceEEEecCCceeeEEEecccc-ccchhhhHHHHHHHHHHHHHhcccccccccc
Confidence            589999888764    48999999999999999999999999999986 6799999999999999999999999999999


Q ss_pred             CceeEeCCC---eEEEecceEeCcEEEEeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCChhhhH
Q 029546           81 LTGVWVGDQ---KLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLI  157 (191)
Q Consensus        81 ~~GVwv~~~---KIasiGv~i~~~vt~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~~~~  157 (191)
                      .+|||++++   ||||||+++++|+|+||+||||++||++|+.|+|||+++..||||+++++..         ++    +
T Consensus       130 ~~GVwv~~~~~~KIasiGv~v~~~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vtSl~~~lg~~---------v~----~  196 (216)
T d1w66a1         130 RSGVWLPGRPARKVAAIGVRVSRATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRT---------VT----V  196 (216)
T ss_dssp             EEEEEECSSSCEEEEEEEEEEETTEEEEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHHHTSC---------CC----H
T ss_pred             CCceeeecchhhHHHHHHHHhccceeecceEEeccCChhhcCeEEcCCCCCCceeeeHHHhCCC---------CC----H
Confidence            999999864   9999999999999999999999999999999999999999999999988764         33    7


Q ss_pred             HHHHHHHHHHHHHhccccc
Q 029546          158 DIAHNSLIKEFSEVFQLEI  176 (191)
Q Consensus       158 ~~v~~~l~~~F~~~F~~~~  176 (191)
                      ++|++.++++|++.|+..+
T Consensus       197 ~ev~~~l~~~~~~~f~~~~  215 (216)
T d1w66a1         197 DEVRATVAAAVCAALDGVL  215 (216)
T ss_dssp             HHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHhhccC
Confidence            8999999999999998654
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus agalactiae [TaxId: 1311]} Back     information, alignment and structure
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ddza1 d.104.1.4 (A:3-190) Uncharacterized protein PH0223 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure