Citrus Sinensis ID: 029549

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-
MASSGEEWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNPNAPKPHRPLVHQAMN
cccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHcccccccccEEEcccEEEEEccccHHHHHHHHHccccEEEEcccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHHHHcccccccccccHHHccc
cccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHccccccEccEEccccEEEEEccccHHHHHHHHHccccEEEEcccccccccHHHHHHHHHcccccccccEcccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
massgeewspdtLAFMDLAIQQAKLALdslevpvgcvilEDGKviaagrnrttetrnaTRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSkcclyvtcepcIMCAAALSILGIKEVYYgcanekfggcgsILSLHlsdskmlnsgdvlgrkgfkctggvmASEAVSLFRSFYeqgnpnapkphrplvhqamn
massgeewspDTLAFMDLAIQQAKLALDSLEVPVGCVILEdgkviaagrnrttetrnatrhAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQgnpnapkphrplvhqamn
MASSGEEWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIaagrnrttetrnatrhaeMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNPNAPKPHRPLVHQAMN
***********TLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRN***********AEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFY********************
************LAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSF*********************
********SPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNPNAPKPHRPLVHQAMN
*******WSPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNPNAPKPHRPL******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASSGEEWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNPNAPKPHRPLVHQAMN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query191 2.2.26 [Sep-21-2011]
Q5E9J7191 tRNA-specific adenosine d yes no 0.837 0.837 0.505 8e-42
Q7Z6V5191 tRNA-specific adenosine d yes no 0.837 0.837 0.488 1e-40
Q6P6J0191 tRNA-specific adenosine d yes no 0.837 0.837 0.488 1e-40
Q0P4H0170 tRNA-specific adenosine d yes no 0.806 0.905 0.488 3e-38
Q4V7V8175 tRNA-specific adenosine d N/A no 0.806 0.88 0.482 1e-37
Q5RIV4214 tRNA-specific adenosine d yes no 0.816 0.728 0.488 5e-37
P47058250 tRNA-specific adenosine d yes no 0.848 0.648 0.368 2e-25
O94642389 tRNA-specific adenosine d yes no 0.691 0.339 0.406 5e-24
P68999171 tRNA-specific adenosine d N/A no 0.743 0.830 0.331 3e-20
P0DA21171 tRNA-specific adenosine d yes no 0.743 0.830 0.331 3e-20
>sp|Q5E9J7|ADAT2_BOVIN tRNA-specific adenosine deaminase 2 OS=Bos taurus GN=DEADC1 PE=2 SV=1 Back     alignment and function desciption
 Score =  169 bits (429), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 86/170 (50%), Positives = 116/170 (68%), Gaps = 10/170 (5%)

Query: 11  DTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVL 70
           +T  +M+ A+Q AK ALD+ EVPVGC+++ + +V+  GRN   +T+NATRHAEM AID  
Sbjct: 21  ETEKWMEQAMQMAKDALDNTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQA 80

Query: 71  LDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSI 130
           LD  ++ G S SE+   F    LYVT EPCIMCAAAL ++ I  V YGC NE+FGGCGS+
Sbjct: 81  LDWCRRRGRSPSEV---FEHTVLYVTVEPCIMCAAALRLMRIPLVVYGCQNERFGGCGSV 137

Query: 131 LSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNPNAPK 180
           L +  +D  + ++G     K F+CT G  A EAV + ++FY+Q NPNAPK
Sbjct: 138 LDIASAD--LPSTG-----KPFQCTPGYRAEEAVEMLKTFYKQENPNAPK 180
Probably participates in deamination of adenosine-34 to inosine in many tRNAs.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 5EC: .EC: 4EC: .EC: -
>sp|Q7Z6V5|ADAT2_HUMAN tRNA-specific adenosine deaminase 2 OS=Homo sapiens GN=ADAT2 PE=1 SV=1 Back     alignment and function description
>sp|Q6P6J0|ADAT2_MOUSE tRNA-specific adenosine deaminase 2 OS=Mus musculus GN=Adat2 PE=2 SV=1 Back     alignment and function description
>sp|Q0P4H0|ADAT2_XENTR tRNA-specific adenosine deaminase 2 OS=Xenopus tropicalis GN=adat2 PE=2 SV=1 Back     alignment and function description
>sp|Q4V7V8|ADAT2_XENLA tRNA-specific adenosine deaminase 2 OS=Xenopus laevis GN=adat2 PE=2 SV=1 Back     alignment and function description
>sp|Q5RIV4|ADAT2_DANRE tRNA-specific adenosine deaminase 2 OS=Danio rerio GN=adat2 PE=2 SV=2 Back     alignment and function description
>sp|P47058|TAD2_YEAST tRNA-specific adenosine deaminase subunit TAD2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAD2 PE=1 SV=1 Back     alignment and function description
>sp|O94642|TAD2_SCHPO tRNA-specific adenosine deaminase subunit tad2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tad2 PE=3 SV=2 Back     alignment and function description
>sp|P68999|TADA_STRP1 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes serotype M1 GN=tadA PE=3 SV=1 Back     alignment and function description
>sp|P0DA21|TADA_STRPQ tRNA-specific adenosine deaminase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=tadA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query191
449457197191 PREDICTED: tRNA-specific adenosine deami 0.984 0.984 0.794 7e-83
356549373182 PREDICTED: tRNA-specific adenosine deami 0.937 0.983 0.816 5e-81
255580984223 tRNA-specific adenosine deaminase subuni 0.926 0.793 0.813 9e-81
356564819182 PREDICTED: tRNA-specific adenosine deami 0.942 0.989 0.801 2e-80
255628537182 unknown [Glycine max] 0.937 0.983 0.811 2e-80
124360458178 CMP/dCMP deaminase, zinc-binding [Medica 0.905 0.971 0.777 4e-78
296090277205 unnamed protein product [Vitis vinifera] 0.994 0.926 0.811 3e-77
357508883191 tRNA-specific adenosine deaminase [Medic 0.905 0.905 0.725 2e-75
297847068192 EMB2191 [Arabidopsis lyrata subsp. lyrat 0.968 0.963 0.703 6e-74
115452727183 Os03g0321900 [Oryza sativa Japonica Grou 0.895 0.934 0.730 2e-72
>gi|449457197|ref|XP_004146335.1| PREDICTED: tRNA-specific adenosine deaminase 2-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  311 bits (798), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 151/190 (79%), Positives = 169/190 (88%), Gaps = 2/190 (1%)

Query: 1   MASSGEEWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATR 60
           M SS E+ S DTL FM+LAIQQAKLAL++LEVPVGCVI+EDG VIA GRNRTTETRNATR
Sbjct: 1   MDSSVEDCSSDTLRFMELAIQQAKLALNNLEVPVGCVIVEDGMVIATGRNRTTETRNATR 60

Query: 61  HAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCA 120
           HAEMEAID+L++ WQ++GLS SE+A+KFSKC LYVTCEPCIMCA+ALSI+GIKEVYYGCA
Sbjct: 61  HAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSIIGIKEVYYGCA 120

Query: 121 NEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNPNAPK 180
           N+KFGGCGSILSLHL   +   SG+ LGR GFKCT G+MASEAV LFRSFYEQGNPNAPK
Sbjct: 121 NDKFGGCGSILSLHLGSGEAPTSGNGLGR-GFKCTAGIMASEAVGLFRSFYEQGNPNAPK 179

Query: 181 PHRPLV-HQA 189
           PHRPLV HQA
Sbjct: 180 PHRPLVNHQA 189

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356549373|ref|XP_003543068.1| PREDICTED: tRNA-specific adenosine deaminase 2 [Glycine max] Back     alignment and taxonomy information
>gi|255580984|ref|XP_002531310.1| tRNA-specific adenosine deaminase subunit TAD2, putative [Ricinus communis] gi|223529101|gb|EEF31082.1| tRNA-specific adenosine deaminase subunit TAD2, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356564819|ref|XP_003550645.1| PREDICTED: tRNA-specific adenosine deaminase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|255628537|gb|ACU14613.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|124360458|gb|ABN08468.1| CMP/dCMP deaminase, zinc-binding [Medicago truncatula] Back     alignment and taxonomy information
>gi|296090277|emb|CBI40096.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357508883|ref|XP_003624730.1| tRNA-specific adenosine deaminase [Medicago truncatula] gi|355499745|gb|AES80948.1| tRNA-specific adenosine deaminase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297847068|ref|XP_002891415.1| EMB2191 [Arabidopsis lyrata subsp. lyrata] gi|297337257|gb|EFH67674.1| EMB2191 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|115452727|ref|NP_001049964.1| Os03g0321900 [Oryza sativa Japonica Group] gi|108707878|gb|ABF95673.1| Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed [Oryza sativa Japonica Group] gi|113548435|dbj|BAF11878.1| Os03g0321900 [Oryza sativa Japonica Group] gi|218192723|gb|EEC75150.1| hypothetical protein OsI_11352 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query191
TAIR|locus:505006173182 emb2191 "embryo defective 2191 0.926 0.972 0.639 1.5e-58
UNIPROTKB|Q5E9J7191 DEADC1 "tRNA-specific adenosin 0.837 0.837 0.441 5.4e-31
UNIPROTKB|E2R9C9228 ADAT2 "Uncharacterized protein 0.837 0.701 0.435 5.4e-31
UNIPROTKB|F1S713191 ADAT2 "Uncharacterized protein 0.837 0.837 0.429 1.1e-30
UNIPROTKB|Q7Z6V5191 ADAT2 "tRNA-specific adenosine 0.837 0.837 0.423 6.2e-30
MGI|MGI:1914007191 Adat2 "adenosine deaminase, tR 0.837 0.837 0.423 7.9e-30
UNIPROTKB|F1P565183 ADAT2 "Uncharacterized protein 0.848 0.885 0.412 6.4e-28
ZFIN|ZDB-GENE-041014-360239 adat2 "adenosine deaminase, tR 0.801 0.640 0.398 7.6e-25
DICTYBASE|DDB_G0288099254 DDB_G0288099 "adenosine deamin 0.827 0.622 0.343 2.1e-22
RGD|1309642155 Adat2 "adenosine deaminase, tR 0.675 0.832 0.410 7e-22
TAIR|locus:505006173 emb2191 "embryo defective 2191" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 117/183 (63%), Positives = 135/183 (73%)

Query:     6 EEWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIXXXXXXXXXXXXXXXXXXME 65
             E+   D+  +M  A+ QAKLAL++LEVPVGCV LEDGKVI                  ME
Sbjct:     3 EDHCEDSHNYMGFALHQAKLALEALEVPVGCVFLEDGKVIASGRNRTNETRNATRHAEME 62

Query:    66 AIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFG 125
             AID L+ QWQK+GLS S++AEKFSKC LYVTCEPCIMCA+ALS LGIKEVYYGC N+KFG
Sbjct:    63 AIDQLVGQWQKDGLSPSQVAEKFSKCVLYVTCEPCIMCASALSFLGIKEVYYGCPNDKFG 122

Query:   126 GCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNPNAPKPHRPL 185
             GCGSILSLHL  S+    G     KG+KC GG+MA EAVSLF+ FYEQGNPNAPKPHRP+
Sbjct:   123 GCGSILSLHLG-SEEAQRG-----KGYKCRGGIMAEEAVSLFKCFYEQGNPNAPKPHRPV 176

Query:   186 VHQ 188
             V +
Sbjct:   177 VQR 179
GO:0003824 "catalytic activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0016787 "hydrolase activity" evidence=IEA
UNIPROTKB|Q5E9J7 DEADC1 "tRNA-specific adenosine deaminase 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9C9 ADAT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1S713 ADAT2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q7Z6V5 ADAT2 "tRNA-specific adenosine deaminase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1914007 Adat2 "adenosine deaminase, tRNA-specific 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1P565 ADAT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041014-360 adat2 "adenosine deaminase, tRNA-specific 2, TAD2 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288099 DDB_G0288099 "adenosine deaminase, tRNA-specific" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
RGD|1309642 Adat2 "adenosine deaminase, tRNA-specific 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5E9J7ADAT2_BOVIN3, ., 5, ., 4, ., -0.50580.83760.8376yesno
Q6P6J0ADAT2_MOUSE3, ., 5, ., 4, ., -0.48820.83760.8376yesno
Q0P4H0ADAT2_XENTR3, ., 5, ., 4, ., -0.48800.80620.9058yesno
Q7Z6V5ADAT2_HUMAN3, ., 5, ., 4, ., -0.48820.83760.8376yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.4.1LOW CONFIDENCE prediction!
3rd Layer3.5.40.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh1_pm.C_scaffold_1003032
annotation not avaliable (192 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
S8
ATP-binding family protei (379 aa)
   •  • 0.550
scaffold_501626.1
annotation not avaliable (178 aa)
•  • •• 0.506
fgenesh2_kg.6__2480__AT5G24840.1
annotation not avaliable (251 aa)
   •  • 0.496
scaffold_200152.1
annotation not avaliable (534 aa)
•  •    0.480
fgenesh2_kg.5__2202__AT3G57610.1
annotation not avaliable (490 aa)
•  •  • 0.405

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query191
COG0590152 COG0590, CumB, Cytosine/adenosine deaminases [Nucl 2e-41
cd01285109 cd01285, nucleoside_deaminase, Nucleoside deaminas 3e-40
pfam00383104 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycyti 1e-20
PRK10860172 PRK10860, PRK10860, tRNA-specific adenosine deamin 3e-20
cd01284115 cd01284, Riboflavin_deaminase-reductase, Riboflavi 3e-09
COG0117146 COG0117, RibD, Pyrimidine deaminase [Coenzyme meta 3e-09
COG2131164 COG2131, ComEB, Deoxycytidylate deaminase [Nucleot 5e-09
cd01286131 cd01286, deoxycytidylate_deaminase, Deoxycytidylat 2e-07
cd0078696 cd00786, cytidine_deaminase-like, Cytidine and deo 3e-06
TIGR00326 344 TIGR00326, eubact_ribD, riboflavin biosynthesis pr 5e-06
PHA02588168 PHA02588, cd, deoxycytidylate deaminase; Provision 9e-06
TIGR02571151 TIGR02571, ComEB, ComE operon protein 2 1e-04
pfam14439113 pfam14439, Bd3614-deam, Bd3614-like deaminase 3e-04
>gnl|CDD|223663 COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  136 bits (344), Expect = 2e-41
 Identities = 57/166 (34%), Positives = 80/166 (48%), Gaps = 19/166 (11%)

Query: 9   SPDTLAFMDLAIQQAKLALDSLEVPVGCVIL-EDGKVIAAGRNRTTETRNATRHAEMEAI 67
           S     FM  A+++AK A D  EVPVG VI+  DG++IA G NR  E  + T HAE+ AI
Sbjct: 5   SEKDEDFMREALKEAKKAGDEGEVPVGAVIVDADGEIIARGHNRREEDNDPTAHAEILAI 64

Query: 68  DVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGC 127
                       +++    +   C LYVT EPC MCA A+    I  V YG ++ K G  
Sbjct: 65  ---------RAAAETLGNYRLKDCTLYVTLEPCPMCAGAIIWARIDRVVYGASDPKTGAI 115

Query: 128 GSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQ 173
           GS+L   +     LN          +  GG++  E  +L   F+ +
Sbjct: 116 GSLLD--ILKDPRLNH-------RVEVYGGILEEECSALLSEFFRR 152

Length = 152
>gnl|CDD|238612 cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases Back     alignment and domain information
>gnl|CDD|215887 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>gnl|CDD|182786 PRK10860, PRK10860, tRNA-specific adenosine deaminase; Provisional Back     alignment and domain information
>gnl|CDD|238611 cd01284, Riboflavin_deaminase-reductase, Riboflavin-specific deaminase Back     alignment and domain information
>gnl|CDD|223195 COG0117, RibD, Pyrimidine deaminase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|225042 COG2131, ComEB, Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|238613 cd01286, deoxycytidylate_deaminase, Deoxycytidylate deaminase domain Back     alignment and domain information
>gnl|CDD|238406 cd00786, cytidine_deaminase-like, Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>gnl|CDD|232920 TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD Back     alignment and domain information
>gnl|CDD|222894 PHA02588, cd, deoxycytidylate deaminase; Provisional Back     alignment and domain information
>gnl|CDD|131622 TIGR02571, ComEB, ComE operon protein 2 Back     alignment and domain information
>gnl|CDD|206605 pfam14439, Bd3614-deam, Bd3614-like deaminase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 191
PRK10860172 tRNA-specific adenosine deaminase; Provisional 100.0
COG0590152 CumB Cytosine/adenosine deaminases [Nucleotide tra 100.0
COG0117146 RibD Pyrimidine deaminase [Coenzyme metabolism] 100.0
PRK10786 367 ribD bifunctional diaminohydroxyphosphoribosylamin 100.0
PLN02807 380 diaminohydroxyphosphoribosylaminopyrimidine deamin 100.0
cd01285109 nucleoside_deaminase Nucleoside deaminases include 100.0
TIGR00326 344 eubact_ribD riboflavin biosynthesis protein RibD. 100.0
PHA02588168 cd deoxycytidylate deaminase; Provisional 100.0
KOG1018169 consensus Cytosine deaminase FCY1 and related enzy 99.98
TIGR02571151 ComEB ComE operon protein 2. This protein is found 99.97
cd01286131 deoxycytidylate_deaminase Deoxycytidylate deaminas 99.97
cd01284115 Riboflavin_deaminase-reductase Riboflavin-specific 99.96
PF00383102 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deam 99.96
cd0078696 cytidine_deaminase-like Cytidine and deoxycytidyla 99.95
COG2131164 ComEB Deoxycytidylate deaminase [Nucleotide transp 99.9
KOG2771344 consensus Subunit of tRNA-specific adenosine-34 de 99.82
cd01283112 cytidine_deaminase Cytidine deaminase zinc-binding 99.77
KOG3127230 consensus Deoxycytidylate deaminase [Nucleotide tr 99.76
TIGR01354127 cyt_deam_tetra cytidine deaminase, homotetrameric. 99.32
PF14439136 Bd3614-deam: Bd3614-like deaminase 99.2
PRK06848139 hypothetical protein; Validated 99.13
PRK14719 360 bifunctional RNAse/5-amino-6-(5-phosphoribosylamin 99.01
COG0295134 Cdd Cytidine deaminase [Nucleotide transport and m 98.86
PRK08298136 cytidine deaminase; Validated 98.85
PRK12411132 cytidine deaminase; Provisional 98.81
PRK05578131 cytidine deaminase; Validated 98.8
TIGR01355283 cyt_deam_dimer cytidine deaminase, homodimeric. Th 98.66
PLN02402 303 cytidine deaminase 98.47
KOG0833173 consensus Cytidine deaminase [Nucleotide transport 98.45
PRK09027295 cytidine deaminase; Provisional 98.35
PLN02182 339 cytidine deaminase 98.25
PRK09027295 cytidine deaminase; Provisional 98.18
TIGR01355283 cyt_deam_dimer cytidine deaminase, homodimeric. Th 97.95
PLN02402303 cytidine deaminase 97.53
PF14437146 MafB19-deam: MafB19-like deaminase 96.63
PF08211124 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deam 95.97
PF14431125 YwqJ-deaminase: YwqJ-like deaminase 95.62
PF14424133 Toxin-deaminase: The BURPS668_1122 family of deami 91.12
PF14440118 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase 89.29
PF08210188 APOBEC_N: APOBEC-like N-terminal domain; InterPro: 88.33
>PRK10860 tRNA-specific adenosine deaminase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.4e-42  Score=273.99  Aligned_cols=149  Identities=32%  Similarity=0.499  Sum_probs=130.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCCC
Q 029549           11 DTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSK   90 (191)
Q Consensus        11 ~~~~~m~~Ai~~A~~a~~~~~~pvGavIv~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~   90 (191)
                      +|++||++|+++|+++...+++|||||||++|+||++|+|+.....|++.|||++||+++.+++..         +.+.+
T Consensus        12 ~~~~~m~~A~~~A~~a~~~g~~pvGAVIV~~g~IIa~g~N~~~~~~d~~~HAEi~Ai~~a~~~~~~---------~~l~g   82 (172)
T PRK10860         12 SHEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQN---------YRLLD   82 (172)
T ss_pred             cHHHHHHHHHHHHHHhhccCCCCEEEEEEeCCEEEEEeeCCCCCCCCCccCHHHHHHHHHHHhcCC---------CCcCC
Confidence            367899999999999998899999999999999999999998888899999999999999877653         35789


Q ss_pred             cEEEecCCChHHHHHHHHHhCCCeEEEeecCCCCcccccccccccccccccccccccCCCCeEEEccCCHHHHHHHHHHH
Q 029549           91 CCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSF  170 (191)
Q Consensus        91 ~~ly~T~EPC~mC~~ai~~sgi~rVvy~~~~~~~g~~g~~~~l~~~~~~~~~~~~~l~~~~i~V~~gvl~~e~~~l~~~f  170 (191)
                      +|||||+|||+||++||+|+||+||||+.++++.|+.|+.+.+.....        + ++.++|++|++++||.+|++.|
T Consensus        83 ~tlY~TlEPC~MC~~aii~agI~rVvyg~~d~~~g~~g~~~~~l~~~~--------~-~~~i~v~~gv~~~e~~~ll~~f  153 (172)
T PRK10860         83 ATLYVTLEPCVMCAGAMVHSRIGRLVFGARDAKTGAAGSLMDVLHHPG--------M-NHRVEITEGVLADECAALLSDF  153 (172)
T ss_pred             cEEEeeCCCcHHHHHHHHHhCCCEEEEeecCCCCCCCCcHHHHhhccc--------C-CCCCEEEeCccHHHHHHHHHHH
Confidence            999999999999999999999999999999999988776544332111        1 3568999999999999999999


Q ss_pred             HHhcCCC
Q 029549          171 YEQGNPN  177 (191)
Q Consensus       171 ~~~~~~~  177 (191)
                      |++.+++
T Consensus       154 f~~~~~~  160 (172)
T PRK10860        154 FRMRRQE  160 (172)
T ss_pred             HHHHhhc
Confidence            9987654

>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism] Back     alignment and domain information
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase Back     alignment and domain information
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases Back     alignment and domain information
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD Back     alignment and domain information
>PHA02588 cd deoxycytidylate deaminase; Provisional Back     alignment and domain information
>KOG1018 consensus Cytosine deaminase FCY1 and related enzymes [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR02571 ComEB ComE operon protein 2 Back     alignment and domain information
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain Back     alignment and domain information
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase Back     alignment and domain information
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3 Back     alignment and domain information
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG2771 consensus Subunit of tRNA-specific adenosine-34 deaminase [RNA processing and modification] Back     alignment and domain information
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain Back     alignment and domain information
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric Back     alignment and domain information
>PF14439 Bd3614-deam: Bd3614-like deaminase Back     alignment and domain information
>PRK06848 hypothetical protein; Validated Back     alignment and domain information
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK08298 cytidine deaminase; Validated Back     alignment and domain information
>PRK12411 cytidine deaminase; Provisional Back     alignment and domain information
>PRK05578 cytidine deaminase; Validated Back     alignment and domain information
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric Back     alignment and domain information
>PLN02402 cytidine deaminase Back     alignment and domain information
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK09027 cytidine deaminase; Provisional Back     alignment and domain information
>PLN02182 cytidine deaminase Back     alignment and domain information
>PRK09027 cytidine deaminase; Provisional Back     alignment and domain information
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric Back     alignment and domain information
>PLN02402 cytidine deaminase Back     alignment and domain information
>PF14437 MafB19-deam: MafB19-like deaminase Back     alignment and domain information
>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase Back     alignment and domain information
>PF14431 YwqJ-deaminase: YwqJ-like deaminase Back     alignment and domain information
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases Back     alignment and domain information
>PF14440 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase Back     alignment and domain information
>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query191
3dh1_A189 Crystal Structure Of Human Trna-Specific Adenosine- 2e-32
2nx8_A179 The Crystal Structure Of The Trna-Specific Adenosin 2e-15
2a8n_A144 Biochemical And Structural Studies Of A-To-I Editin 6e-11
2b3j_A159 Crystal Structure Of Staphylococcus Aureus Trna Ade 7e-11
1wwr_A171 Crystal Structure Of Trna Adenosine Deaminase Tada 4e-10
1z3a_A168 Crystal Structure Of Trna Adenosine Deaminase Tada 1e-09
3ocq_A183 Crystal Structure Of Trna-Specific Adenosine Deamin 2e-08
>pdb|3DH1|A Chain A, Crystal Structure Of Human Trna-Specific Adenosine-34 Deaminase Subunit Adat2 Length = 189 Back     alignment and structure 
Iteration: 1

 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 72/170 (42%), Positives = 104/170 (61%), Gaps = 10/170 (5%)
Query: 11  DTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIXXXXXXXXXXXXXXXXXXMEAIDVL 70
           +T  +M+ A+  AK AL++ EVPVGC+++ + +V+                  M AID +
Sbjct: 25  ETEKWMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQV 84
Query: 71  LDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSI 130
           LD  +++G S SE+   F    LYVT EPCIMCAAAL ++ I  V YGC NE+FGGCGS+
Sbjct: 85  LDWCRQSGKSPSEV---FEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSV 141
Query: 131 LSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNPNAPK 180
           L++  +D  + N+G     + F+C  G  A EAV + ++FY+Q NPNAPK
Sbjct: 142 LNIASAD--LPNTG-----RPFQCIPGYRAEEAVEMLKTFYKQENPNAPK 184
>pdb|2NX8|A Chain A, The Crystal Structure Of The Trna-Specific Adenosine Deaminase From Streptococcus Pyogenes Length = 179 Back     alignment and structure
>pdb|2A8N|A Chain A, Biochemical And Structural Studies Of A-To-I Editing By Trna:a34 Deaminases At The Wobble Position Of Transfer Rna Length = 144 Back     alignment and structure
>pdb|2B3J|A Chain A, Crystal Structure Of Staphylococcus Aureus Trna Adenosine Deaminase, Tada, In Complex With Rna Length = 159 Back     alignment and structure
>pdb|1WWR|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From Aquifex Aeolicus Length = 171 Back     alignment and structure
>pdb|1Z3A|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From Escherichia Coli Length = 168 Back     alignment and structure
>pdb|3OCQ|A Chain A, Crystal Structure Of Trna-Specific Adenosine Deaminase From Salmonella Enterica Length = 183 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query191
3dh1_A189 TRNA-specific adenosine deaminase 2; zinc-binding 9e-68
2a8n_A144 Cytidine and deoxycytidylate deaminase; RNA editin 1e-42
2b3j_A159 TRNA adenosine deaminase; mixed alpha-beta, protei 5e-41
1wwr_A171 TRNA adenosine deaminase TADA; homodimer, riken st 8e-41
2nx8_A179 TRNA-specific adenosine deaminase; TAD, hydrolase; 8e-41
2g84_A197 Cytidine and deoxycytidylate deaminase zinc-bindi; 2e-40
1z3a_A168 TRNA-specific adenosine deaminase; tRNA adenosine 4e-40
1wkq_A164 Guanine deaminase; domain SWAP, the cytidine deami 2e-34
1p6o_A161 Cytosine deaminase; hydrolase, dimer, inhibitor bo 5e-34
2w4l_A178 DCMP deaminse, deoxycytidylate deaminase; pyrimidi 8e-11
2hvw_A184 Deoxycytidylate deaminase; 3-layer (alpha-beta)-sa 1e-10
2b3z_A 373 Riboflavin biosynthesis protein RIBD; alpha/beta/a 6e-09
2hxv_A 360 Diaminohydroxyphosphoribosylaminopyrimidine deami 2e-08
2g6v_A 402 Riboflavin biosynthesis protein RIBD; RIBD APO str 2e-08
1vq2_A193 DCMP deaminase, deoxycytidylate deaminase; hydrola 7e-08
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} Length = 189 Back     alignment and structure
 Score =  204 bits (521), Expect = 9e-68
 Identities = 81/169 (47%), Positives = 114/169 (67%), Gaps = 10/169 (5%)

Query: 15  FMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQW 74
           +M+ A+  AK AL++ EVPVGC+++ + +V+  GRN   +T+NATRHAEM AID +LD  
Sbjct: 29  WMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWC 88

Query: 75  QKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLH 134
           +++G S SE+   F    LYVT EPCIMCAAAL ++ I  V YGC NE+FGGCGS+L++ 
Sbjct: 89  RQSGKSPSEV---FEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIA 145

Query: 135 LSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNPNAPKPHR 183
              + + N+G     + F+C  G  A EAV + ++FY+Q NPNAPK   
Sbjct: 146 --SADLPNTG-----RPFQCIPGYRAEEAVEMLKTFYKQENPNAPKSKV 187
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 Length = 144 Back     alignment and structure
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Length = 159 Back     alignment and structure
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Length = 171 Back     alignment and structure
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Length = 179 Back     alignment and structure
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 Length = 197 Back     alignment and structure
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A Length = 168 Back     alignment and structure
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Length = 164 Back     alignment and structure
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Length = 161 Back     alignment and structure
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 178 Back     alignment and structure
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* Length = 184 Back     alignment and structure
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* Length = 373 Back     alignment and structure
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 Length = 360 Back     alignment and structure
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* Length = 402 Back     alignment and structure
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Length = 193 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query191
3dh1_A189 TRNA-specific adenosine deaminase 2; zinc-binding 100.0
2nx8_A179 TRNA-specific adenosine deaminase; TAD, hydrolase; 100.0
1z3a_A168 TRNA-specific adenosine deaminase; tRNA adenosine 100.0
2b3j_A159 TRNA adenosine deaminase; mixed alpha-beta, protei 100.0
2a8n_A144 Cytidine and deoxycytidylate deaminase; RNA editin 100.0
2g84_A197 Cytidine and deoxycytidylate deaminase zinc-bindi; 100.0
1wwr_A171 TRNA adenosine deaminase TADA; homodimer, riken st 100.0
1wkq_A164 Guanine deaminase; domain SWAP, the cytidine deami 100.0
1p6o_A161 Cytosine deaminase; hydrolase, dimer, inhibitor bo 100.0
2b3z_A 373 Riboflavin biosynthesis protein RIBD; alpha/beta/a 100.0
2hxv_A 360 Diaminohydroxyphosphoribosylaminopyrimidine deami 100.0
2g6v_A 402 Riboflavin biosynthesis protein RIBD; RIBD APO str 100.0
1vq2_A193 DCMP deaminase, deoxycytidylate deaminase; hydrola 100.0
2hvw_A184 Deoxycytidylate deaminase; 3-layer (alpha-beta)-sa 100.0
2w4l_A178 DCMP deaminse, deoxycytidylate deaminase; pyrimidi 99.98
3g8q_A 278 Predicted RNA-binding protein, contains thump doma 99.92
2nyt_A190 Probable C->U-editing enzyme apobec-2; cytidine de 99.82
1uwz_A136 Cytidine deaminase; CDD, tetramer, zinc binding, p 99.72
2z3g_A130 Blasticidin-S deaminase; hydrolase, cytidine deami 99.68
2fr5_A146 Cytidine deaminase; tetrahydrouridine, protein-inh 99.65
3b8f_A142 Putative blasticidin S deaminase; cytidine deamina 99.43
3r2n_A138 Cytidine deaminase; structural genomics, seattle s 99.37
1r5t_A142 Cytidine deaminase; zinc dependent deaminase, RNA 99.34
2d30_A141 Cytidine deaminase; purines, pyrimidines, nucleosi 99.3
3mpz_A150 Cytidine deaminase; ssgcid, structu genomics, seat 99.1
1ctt_A294 Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es 99.08
3oj6_A158 Blasticidin-S deaminase; ssgcid, seattle structura 98.91
1ctt_A294 Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es 98.89
3dmo_A138 Cytidine deaminase; structural genomics, seattle s 98.84
4eg2_A298 Cytidine deaminase; UMP synthesis, Zn binding, hyd 98.28
4eg2_A298 Cytidine deaminase; UMP synthesis, Zn binding, hyd 98.13
3v4k_A203 DNA DC->DU-editing enzyme apobec-3G; antiviral def 94.24
3vow_A190 Probable DNA DC->DU-editing enzyme apobec-3C; anti 92.87
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1e-46  Score=300.59  Aligned_cols=163  Identities=50%  Similarity=0.858  Sum_probs=132.2

Q ss_pred             HhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCC
Q 029549           10 PDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS   89 (191)
Q Consensus        10 ~~~~~~m~~Ai~~A~~a~~~~~~pvGavIv~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~   89 (191)
                      .+|+.||++|+++|+++...+++|||||||+||+||+.|+|.+....+++.|||++||+++.+.....+.+.   .+.+.
T Consensus        24 ~~d~~~M~~Al~lA~~a~~~~~~pVGAVIV~~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~~~~~~~~---~~~l~  100 (189)
T 3dh1_A           24 EETEKWMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSP---SEVFE  100 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHHHHCCCH---HHHHT
T ss_pred             HHHHHHHHHHHHHHHHhhhCCCCCEEEEEEECCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHHhhcCccc---ccccC
Confidence            468899999999999999889999999999999999999998877789999999999999987654333221   13578


Q ss_pred             CcEEEecCCChHHHHHHHHHhCCCeEEEeecCCCCcccccccccccccccccccccccCCCC--eEEEccCCHHHHHHHH
Q 029549           90 KCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKG--FKCTGGVMASEAVSLF  167 (191)
Q Consensus        90 ~~~ly~T~EPC~mC~~ai~~sgi~rVvy~~~~~~~g~~g~~~~l~~~~~~~~~~~~~l~~~~--i~V~~gvl~~e~~~l~  167 (191)
                      ++|||||+|||+||++||+|+||+||||+..+|+.|+.|+.+.++.         ..+...|  ++|++|+|++||.+|+
T Consensus       101 g~tLYvTlEPC~mCa~Aii~agI~rVVyg~~~p~~gg~g~~~~~~~---------~~l~~~gh~ieV~~Gvl~~e~~~Ll  171 (189)
T 3dh1_A          101 HTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIAS---------ADLPNTGRPFQCIPGYRAEEAVEML  171 (189)
T ss_dssp             TEEEEEEECCBHHHHHHHHHHTCCEEEEEECCTTTBTBTTSCBCTT---------CCCTTSSCCCEEECCTTHHHHHHHH
T ss_pred             CeEEEEeCCChHHHHHHHHHhCCCEEEEEecCCCcccccccccchh---------hHHHHcCCCeEEEeCccHHHHHHHH
Confidence            9999999999999999999999999999999999999887766653         2233344  9999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCC
Q 029549          168 RSFYEQGNPNAPKPHRP  184 (191)
Q Consensus       168 ~~f~~~~~~~~p~~~~~  184 (191)
                      +.||++.++++|.++||
T Consensus       172 ~~Ff~~~~~~~P~~~~k  188 (189)
T 3dh1_A          172 KTFYKQENPNAPKSKVR  188 (189)
T ss_dssp             HHHTCC-----------
T ss_pred             HHHHHHhcCCCCCCCCC
Confidence            99999999999999875
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Back     alignment and structure
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A Back     alignment and structure
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Back     alignment and structure
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 Back     alignment and structure
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 Back     alignment and structure
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Back     alignment and structure
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Back     alignment and structure
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Back     alignment and structure
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* Back     alignment and structure
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 Back     alignment and structure
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* Back     alignment and structure
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Back     alignment and structure
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* Back     alignment and structure
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} Back     alignment and structure
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri} Back     alignment and structure
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A Back     alignment and structure
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A* Back     alignment and structure
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A* Back     alignment and structure
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A* Back     alignment and structure
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis} Back     alignment and structure
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0 Back     alignment and structure
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1 Back     alignment and structure
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1 Back     alignment and structure
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A Back     alignment and structure
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* Back     alignment and structure
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis} Back     alignment and structure
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* Back     alignment and structure
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei} Back     alignment and structure
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae} Back     alignment and structure
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae} Back     alignment and structure
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A* Back     alignment and structure
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 191
d2g84a1189 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitr 1e-35
d1wwra1151 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA { 1e-24
d2a8na1130 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate de 9e-21
d1z3aa1156 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA 2e-20
d1wkqa_158 c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus sub 2e-20
d1p6oa_156 c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (S 3e-20
d2b3ja1151 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA { 2e-16
d2b3za2145 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein 4e-15
d2hxva2147 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein 4e-10
d1vq2a_193 c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriop 5e-10
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} Length = 189 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Putative deaminase NE0047
species: Nitrosomonas europaea [TaxId: 915]

 Score =  121 bits (304), Expect = 1e-35
 Identities = 34/169 (20%), Positives = 61/169 (36%), Gaps = 11/169 (6%)

Query: 10  PDTLAFMDLAIQQAKLALDSLEVPVGCVIL--EDGKVIAAGRNRTTETRNATRHAEMEAI 67
               A M   ++  +  + +   P    +   + G +IAAG NR    R +  HAE+ A+
Sbjct: 24  AAPEARMGYVLELVRANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILAL 83

Query: 68  DVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGC 127
                  Q    +    A+    C L  + EPC+MC  A+   G++ +     ++     
Sbjct: 84  S----LAQAKLDTHDLSADGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAI 139

Query: 128 GSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNP 176
           G        +         L  +G   T G++   A +L R +      
Sbjct: 140 GFDEGPRPENWM-----GGLEARGITVTTGLLRDAACALLREYNACNGV 183
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} Length = 151 Back     information, alignment and structure
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} Length = 130 Back     information, alignment and structure
>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} Length = 156 Back     information, alignment and structure
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} Length = 158 Back     information, alignment and structure
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 156 Back     information, alignment and structure
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]} Length = 151 Back     information, alignment and structure
>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Length = 145 Back     information, alignment and structure
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Length = 147 Back     information, alignment and structure
>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} Length = 193 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query191
d1z3aa1156 tRNA adenosine deaminase TadA {Escherichia coli [T 100.0
d1wwra1151 tRNA adenosine deaminase TadA {Aquifex aeolicus [T 100.0
d2b3ja1151 tRNA adenosine deaminase TadA {Staphylococcus aure 100.0
d2g84a1189 Putative deaminase NE0047 {Nitrosomonas europaea [ 100.0
d1p6oa_156 Cytosine deaminase {Baker's yeast (Saccharomyces c 100.0
d2a8na1130 Cytidine and deoxycytidylate deaminase CodA {Agrob 100.0
d1wkqa_158 Guanine deaminase GuaD {Bacillus subtilis [TaxId: 100.0
d2hxva2147 Riboflavin biosynthesis protein RibD {Thermotoga m 100.0
d2b3za2145 Riboflavin biosynthesis protein RibD {Bacillus sub 100.0
d1vq2a_193 Deoxycytidylate deaminase {Bacteriophage T4 [TaxId 99.97
d1r5ta_141 mono-domain cytidine deaminase {Baker's yeast (Sac 99.03
d2fr5a1136 mono-domain cytidine deaminase {Mouse (Mus musculu 98.99
d2d30a1124 mono-domain cytidine deaminase {Bacillus anthracis 98.96
d1uwza_130 mono-domain cytidine deaminase {Bacillus subtilis 98.88
d2z3ga1123 Blasticidin-S deaminase {Aspergillus terreus [TaxI 98.86
d1alna2144 Two-domain cytidine deaminase {Escherichia coli [T 98.78
d1alna1150 Two-domain cytidine deaminase {Escherichia coli [T 98.62
>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: tRNA adenosine deaminase TadA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.2e-44  Score=275.49  Aligned_cols=153  Identities=31%  Similarity=0.468  Sum_probs=134.2

Q ss_pred             CCCHhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhh
Q 029549            7 EWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAE   86 (191)
Q Consensus         7 ~~~~~~~~~m~~Ai~~A~~a~~~~~~pvGavIv~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~   86 (191)
                      ++.-+|++||++|+++|+++...+++|||||||+||+||+.|+|.+....+++.|||++||.++...+..         .
T Consensus         2 ~~~~~~e~~M~~Ai~~A~~a~~~~~~pvGaViv~~g~Iia~g~n~~~~~~~~~~HAE~~ai~~a~~~~~~---------~   72 (156)
T d1z3aa1           2 EVEFSHEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQN---------Y   72 (156)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTS---------S
T ss_pred             CCccCHHHHHHHHHHHHHHhccCCCCCEEEEEEECCeEEEEeeccccccCcchhhHHHHhHHHHHhhccc---------c
Confidence            4556899999999999999999999999999999999999999998888899999999999999887764         3


Q ss_pred             cCCCcEEEecCCChHHHHHHHHHhCCCeEEEeecCCCCcccccccccccccccccccccccCCCCeEEEccCCHHHHHHH
Q 029549           87 KFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSL  166 (191)
Q Consensus        87 ~~~~~~ly~T~EPC~mC~~ai~~sgi~rVvy~~~~~~~g~~g~~~~l~~~~~~~~~~~~~l~~~~i~V~~gvl~~e~~~l  166 (191)
                      .+.++++|||+|||+||++||+|+||+|||||..+++.|+.|+...++....         .+++++|.+|+|++||.+|
T Consensus        73 ~l~~~~lytT~ePC~mC~~aii~~gI~rVvyg~~d~~~~~~g~~~~~l~~~~---------~~~~ieV~~gvl~ee~~~l  143 (156)
T d1z3aa1          73 RLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPG---------MNHRVEITEGILADECAAL  143 (156)
T ss_dssp             CCTTCEEEEEECCCHHHHHHHHHHTCSEEEEEECCTTTCTBTTSCBCTTCTT---------CSSCCEEECCTTHHHHHHH
T ss_pred             cccCceeeeccccccchhhHHHHhCCceEEEEeecCCCcccCcHHHHHHhCC---------CCCCcEEEeCcCHHHHHHH
Confidence            5789999999999999999999999999999999999888775555443221         1345899999999999999


Q ss_pred             HHHHHHhcCCC
Q 029549          167 FRSFYEQGNPN  177 (191)
Q Consensus       167 ~~~f~~~~~~~  177 (191)
                      ++.||++.+++
T Consensus       144 l~~Ff~~~r~~  154 (156)
T d1z3aa1         144 LSDFFRMRRQE  154 (156)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhC
Confidence            99999876654
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2z3ga1 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Aspergillus terreus [TaxId: 33178]} Back     information, alignment and structure
>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1alna1 c.97.1.1 (A:1-150) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure