Citrus Sinensis ID: 029551


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-
MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLFLKIGVGCPFTKVLLCQGKMLGSTLQFEFGGLLLA
cccccccccccccccccccccccccEEEEEccccccccccccEEEccccccccccccccccccEEEEEEcccHHHccccHHHHHHHHHHHHcccccHHHHcccccccHHHHccccccccccHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEEEEEcccccEEEEEEcccccccEEEEEEccEEcc
cccHHHHHHEEEccccccccccccccEEEEEccccccccccccEEEcEccccccccccccccccEEEEEcccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccHcHHHHHHHHHHHHHHHccccccccccccEEEEEEEEEEcccccccEEEEEccccccccEEEEEcHHHcc
mgsqvlpqalhwiprsstqcipskrlgfstvlsrgpfvshgvsvsakpigwnlgffvnaQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAesedkveeeevkaprkprvklgDIMGILNKRAveaseserpipdirtgdVVEIKLFLKigvgcpftKVLLCQgkmlgstlqfeFGGLLLA
MGSQVLPQAlhwiprsstqcipSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAesedkveeeevkaprkprvklgdimGILNKraveaseserpipdirtgdVVEIKLFLKIGVGCPFTKVLLCQGKMlgstlqfeFGGLLLA
MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVVRaeaneeaeanesieeeqneavqaqgdvvvaveaesedkveeeevkAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLFLKIGVGCPFTKVLLCQGKMLGSTLQFEFGGLLLA
********ALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVVR*******************************************************DIMGIL***************DIRTGDVVEIKLFLKIGVGCPFTKVLLCQGKMLGSTLQFEFGGLL**
******P*ALHWIP********************************KPIGWNLGFFVNAQVKDSF*********************************************************GDIMGILNKRAVE*****RPIPDIRTGDVVEIKLFLKIGVGCPFTKVLLCQGKMLGSTLQFEFGGLLLA
MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVVRAEA*******************AQGDVVVAVE****************KPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLFLKIGVGCPFTKVLLCQGKMLGSTLQFEFGGLLLA
**SQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSF****E*********************************************RKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLFLKIGVGCPFTKVLLCQGKMLGSTLQFEFGGLLLA
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVxxxxxxxxxxxxxxxxxxxxxxxxxxxxVVVAVEAESEDKVEEEEVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLFLKIGVGCPFTKVLLCQGKMLGSTLQFEFGGLLLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query191 2.2.26 [Sep-21-2011]
Q8W463225 50S ribosomal protein L19 yes no 0.722 0.613 0.472 6e-28
Q8RXX5229 50S ribosomal protein L19 no no 0.748 0.624 0.443 2e-23
P82413233 50S ribosomal protein L19 N/A no 0.748 0.613 0.421 6e-18
>sp|Q8W463|RK191_ARATH 50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana GN=At4g17560 PE=2 SV=1 Back     alignment and function desciption
 Score =  123 bits (309), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 99/161 (61%), Gaps = 23/161 (14%)

Query: 1   MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPI---GWNLGFFV 57
           M    LPQALH IPR+ TQ   SK LGFS+ LS  P +   +SVS   +   G   GF +
Sbjct: 3   MSFHRLPQALHMIPRNPTQS--SKNLGFSSFLSCAPSMDSRISVSRLSLNHPGSKFGFSL 60

Query: 58  NAQVKDSFVVRAE-ANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEE-EVKAP 115
           + +V++ F+VRAE  N EAE+ E                 VA  A++E  VEE  E K  
Sbjct: 61  DTRVRNEFIVRAEEGNTEAESEE----------------FVAEIADTEGNVEEVVEAKPT 104

Query: 116 RKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
           RKPR+KLGD+MGILN++A+E +E  RP+P+IRTGD+VEIKL
Sbjct: 105 RKPRIKLGDVMGILNQKAIEVAEKVRPVPEIRTGDIVEIKL 145




Located at the 30S-50S ribosomal subunit interface and binds directly to 23S ribosomal RNA.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8RXX5|RK192_ARATH 50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana GN=At5g47190 PE=2 SV=1 Back     alignment and function description
>sp|P82413|RK19_SPIOL 50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query191
89257581224 plastid ribosomal protein L19, putative 0.717 0.611 0.471 2e-26
18414915225 50S ribosomal protein L19-1 [Arabidopsis 0.722 0.613 0.472 3e-26
359497145231 PREDICTED: 50S ribosomal protein L19, ch 0.727 0.601 0.464 5e-24
449458994221 PREDICTED: 50S ribosomal protein L19, ch 0.738 0.638 0.487 2e-22
297804426225 ribosomal protein L19 family protein [Ar 0.701 0.595 0.464 4e-22
18422764229 50S ribosomal protein L19-2 [Arabidopsis 0.748 0.624 0.443 1e-21
21592584229 contains similarity to plastid ribosomal 0.748 0.624 0.443 1e-21
255581980207 50S ribosomal protein L19, putative [Ric 0.759 0.700 0.475 2e-21
147854523231 hypothetical protein VITISV_037813 [Viti 0.727 0.601 0.458 6e-21
255629017212 unknown [Glycine max] 0.680 0.613 0.436 2e-20
>gi|89257581|gb|ABD65070.1| plastid ribosomal protein L19, putative [Brassica oleracea] Back     alignment and taxonomy information
 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/157 (47%), Positives = 99/157 (63%), Gaps = 20/157 (12%)

Query: 3   SQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNL---GFFVNA 59
           S + PQALH IPR+ TQ  PSK+LGFS+  S  P ++  ++VS   +  ++   GF ++A
Sbjct: 5   SHLFPQALHMIPRNPTQ--PSKKLGFSSFQSCAPSMNPRLTVSRVSLNHSVSKSGFSLDA 62

Query: 60  QVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPR 119
           + +   +VRAE            E + EAV A  D     E   ED VE  EVKAP+K R
Sbjct: 63  KARREVLVRAEG-----------EGEGEAVDANADT----EGNVEDVVEAGEVKAPKKTR 107

Query: 120 VKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
           VKLGD+MGILN++A+E SE  RP+P+IRTGD+VEIKL
Sbjct: 108 VKLGDVMGILNQKAIEVSEKLRPVPEIRTGDIVEIKL 144




Source: Brassica oleracea

Species: Brassica oleracea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414915|ref|NP_567531.1| 50S ribosomal protein L19-1 [Arabidopsis thaliana] gi|75248729|sp|Q8W463.1|RK191_ARATH RecName: Full=50S ribosomal protein L19-1, chloroplastic; Flags: Precursor gi|17065490|gb|AAL32899.1| Unknown protein [Arabidopsis thaliana] gi|20148593|gb|AAM10187.1| unknown protein [Arabidopsis thaliana] gi|21554252|gb|AAM63327.1| contains similarity to plastid ribosomal protein L19 [Arabidopsis thaliana] gi|332658510|gb|AEE83910.1| 50S ribosomal protein L19-1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|359497145|ref|XP_002264869.2| PREDICTED: 50S ribosomal protein L19, chloroplastic [Vitis vinifera] gi|296088907|emb|CBI38456.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449458994|ref|XP_004147231.1| PREDICTED: 50S ribosomal protein L19, chloroplastic-like [Cucumis sativus] gi|449523724|ref|XP_004168873.1| PREDICTED: 50S ribosomal protein L19, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297804426|ref|XP_002870097.1| ribosomal protein L19 family protein [Arabidopsis lyrata subsp. lyrata] gi|297315933|gb|EFH46356.1| ribosomal protein L19 family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18422764|ref|NP_568677.1| 50S ribosomal protein L19-2 [Arabidopsis thaliana] gi|75247671|sp|Q8RXX5.1|RK192_ARATH RecName: Full=50S ribosomal protein L19-2, chloroplastic; Flags: Precursor gi|19347900|gb|AAL85972.1| unknown protein [Arabidopsis thaliana] gi|21436235|gb|AAM51256.1| unknown protein [Arabidopsis thaliana] gi|332008099|gb|AED95482.1| 50S ribosomal protein L19-2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21592584|gb|AAM64533.1| contains similarity to plastid ribosomal protein L19 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255581980|ref|XP_002531788.1| 50S ribosomal protein L19, putative [Ricinus communis] gi|223528581|gb|EEF30602.1| 50S ribosomal protein L19, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147854523|emb|CAN82787.1| hypothetical protein VITISV_037813 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255629017|gb|ACU14853.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query191
TAIR|locus:2129186225 AT4G17560 [Arabidopsis thalian 0.214 0.182 0.707 3.9e-24
TAIR|locus:2171609229 AT5G47190 [Arabidopsis thalian 0.219 0.183 0.690 6.6e-21
TAIR|locus:2129186 AT4G17560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 168 (64.2 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
 Identities = 29/41 (70%), Positives = 38/41 (92%)

Query:   116 RKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
             RKPR+KLGD+MGILN++A+E +E  RP+P+IRTGD+VEIKL
Sbjct:   105 RKPRIKLGDVMGILNQKAIEVAEKVRPVPEIRTGDIVEIKL 145


GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005840 "ribosome" evidence=IEA;ISS
GO:0006412 "translation" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0042254 "ribosome biogenesis" evidence=ISS
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0051607 "defense response to virus" evidence=RCA
TAIR|locus:2171609 AT5G47190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
AT4G17560
ribosomal protein L19 family protein; ribosomal protein L19 family protein; FUNCTIONS IN- structural constituent of ribosome; INVOLVED IN- translation, ribosome biogenesis; LOCATED IN- ribosome, chloroplast stroma, chloroplast, membrane, chloroplast envelope; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Ribosomal protein L19 (InterPro-IPR001857), Ribosomal protein L19, conserved site (InterPro-IPR018257); BEST Arabidopsis thaliana protein match is- ribosomal protein L19 family protein (TAIR-AT5G47190.1); Has 5332 Blast hits to 5332 [...] (225 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT4G01310
ribosomal protein L5 family protein; ribosomal protein L5 family protein; FUNCTIONS IN- structu [...] (262 aa)
     0.984
emb2394
emb2394 (embryo defective 2394); structural constituent of ribosome; embryo defective 2394 (emb [...] (223 aa)
     0.983
emb1473
emb1473 (embryo defective 1473); structural constituent of ribosome; embryo defective 1473 (emb [...] (241 aa)
     0.978
RPL3A
ribosomal protein L3 family protein; ribosomal protein L3 family protein; FUNCTIONS IN- structu [...] (271 aa)
    0.974
AT3G13120
30S ribosomal protein S10, chloroplast, putative; 30S ribosomal protein S10, chloroplast, putat [...] (191 aa)
      0.973
PRPL11
PRPL11 (PLASTID RIBOSOMAL PROTEIN L11); structural constituent of ribosome; mutant has Decrease [...] (222 aa)
     0.970
RRF
RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR); RIBOSOME RECYCLING FACTOR, CHLOROPLAST [...] (275 aa)
     0.967
AT3G63490
ribosomal protein L1 family protein; ribosomal protein L1 family protein; FUNCTIONS IN- structu [...] (346 aa)
     0.965
RPL4
RPL4; poly(U) binding / structural constituent of ribosome; encodes a plastid ribosomal protein [...] (282 aa)
     0.959
AT1G48350
ribosomal protein L18 family protein; ribosomal protein L18 family protein; FUNCTIONS IN- struc [...] (170 aa)
     0.944

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 191
KOG1698201 consensus Mitochondrial/chloroplast ribosomal prot 99.79
TIGR01024113 rplS_bact ribosomal protein L19, bacterial type. T 99.11
PRK05338116 rplS 50S ribosomal protein L19; Provisional 99.08
CHL00084117 rpl19 ribosomal protein L19 98.95
PF01245113 Ribosomal_L19: Ribosomal protein L19; InterPro: IP 98.94
COG0335115 RplS Ribosomal protein L19 [Translation, ribosomal 98.32
>KOG1698 consensus Mitochondrial/chloroplast ribosomal protein L19 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
Probab=99.79  E-value=1.5e-19  Score=153.11  Aligned_cols=129  Identities=17%  Similarity=0.107  Sum_probs=100.0

Q ss_pred             cceeeecc---CCCccccceecccccceeEEeeccchhhhcchhhHHHhHHHHhhccccchhhccccchhhhhhhcCCCC
Q 029551           40 HGVSVSAK---PIGWNLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPR  116 (191)
Q Consensus        40 srlsls~~---~~s~~~~~~~~~~~k~~fVvrAea~~ea~~~~~~~e~~~E~~~~~~d~v~~~Ege~~~v~eeeE~~~pr  116 (191)
                      ||+++++.   +..|++.+.+.....++|++.+|....+.....+                ..++.-+...-.+..+..+
T Consensus         4 sr~~~~r~~~~~~a~~~~v~l~~~~~~~~~~~~e~~~~a~~~~~~----------------~~~~~~~~~~~~~~~~~f~   67 (201)
T KOG1698|consen    4 SRLGFDRFPMFRAASYRNVSLKGKWFSSFIAISEERCFAPTKRPS----------------VNEPSPESPCVVEQYPEFL   67 (201)
T ss_pred             ceeeeecccccchhhhheeecccceeeeeccccccccccCCCCcc----------------cccCCCCCccccccCcccc
Confidence            34555554   4567777777778889999988774443322220                1233333333344556777


Q ss_pred             CCccchhhHHHHhhHHHHHHhhhcCCCCCCCCCcEEEEEEeeecCCCCcceeeEEEee---ccCCceeEEe
Q 029551          117 KPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLFLKIGVGCPFTKVLLCQG---KMLGSTLQFE  184 (191)
Q Consensus       117 kkrkk~g~IM~ILnkeavee~~~~R~iPdiRpGdIVelklEVPEnkRR~~t~~~ic~~---~glgstf~~~  184 (191)
                      +-++..++||++||+++|++.++.|.+|.|++||||+|+.++|+|+|+++.++||||.   +|+++||+.-
T Consensus        68 ~~~~~~~~~~e~Ldr~a~~~rr~~r~iPe~~~G~Iv~V~s~~p~~k~k~s~f~Gi~I~R~~~Gl~atf~LR  138 (201)
T KOG1698|consen   68 PLRKVAKRIMEILDRQAVLERRKVRDIPEFKVGSIVRVTSEDPENKRKVSRFKGICIRRRNAGLNATFLLR  138 (201)
T ss_pred             cchhHHHHHHHhhCHHHHHHHHhcccCCccccccEEEEEecCCccCCceeEEEEEEEEecccCCcceEEee
Confidence            7788899999999999999999999999999999999999999999999999999996   9999999863



>TIGR01024 rplS_bact ribosomal protein L19, bacterial type Back     alignment and domain information
>PRK05338 rplS 50S ribosomal protein L19; Provisional Back     alignment and domain information
>CHL00084 rpl19 ribosomal protein L19 Back     alignment and domain information
>PF01245 Ribosomal_L19: Ribosomal protein L19; InterPro: IPR001857 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>COG0335 RplS Ribosomal protein L19 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query191
3bbo_R233 Homology Model For The Spinach Chloroplast 50s Subu 1e-11
>pdb|3BBO|R Chain R, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 233 Back     alignment and structure

Iteration: 1

Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 30/42 (71%), Positives = 37/42 (88%) Query: 115 PRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156 PR+ RVKLGDIMGILNK+AV A+E RP+P IRTGD+V+I+L Sbjct: 112 PRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRL 153

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query191
3bbo_R233 Ribosomal protein L19; large ribosomal subunit, sp 5e-17
>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 233 Back     alignment and structure
 Score = 75.1 bits (184), Expect = 5e-17
 Identities = 54/163 (33%), Positives = 76/163 (46%), Gaps = 21/163 (12%)

Query: 1   MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVS---------VSAKPIGW 51
           M S+VLPQAL  IP + +   P  +      +      S   +          S+     
Sbjct: 1   MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSS 60

Query: 52  NLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEE 111
           N     +   ++SFVVR+EA + ++A         E                 +   E E
Sbjct: 61  NFSSIFSFPARNSFVVRSEAEDSSDAPAESVAVVAEE------------ELPVESEAEAE 108

Query: 112 VKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEI 154
            + PR+ RVKLGDIMGILNK+AV A+E  RP+P IRTGD+V+I
Sbjct: 109 ERPPRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQI 151


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query191
3bbo_R233 Ribosomal protein L19; large ribosomal subunit, sp 100.0
2zjr_M166 50S ribosomal protein L19; ribosome, large ribosom 99.16
3r8s_P114 50S ribosomal protein L19; protein biosynthesis, R 99.14
3v2d_T146 50S ribosomal protein L19; ribosome associated inh 99.09
2ftc_K98 39S ribosomal protein L19, mitochondrial; mitochon 98.92
>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
Probab=100.00  E-value=3.8e-42  Score=293.54  Aligned_cols=170  Identities=39%  Similarity=0.528  Sum_probs=58.2

Q ss_pred             CCccccccccccccCC-CCCCCC-CCceeccccccCC----CccccceeeeccCCCccccceecc----cccceeEEeec
Q 029551            1 MGSQVLPQALHWIPRS-STQCIP-SKRLGFSTVLSRG----PFVSHGVSVSAKPIGWNLGFFVNA----QVKDSFVVRAE   70 (191)
Q Consensus         1 Mas~vLPQAL~~iprs-p~q~~p-~k~LgfSS~~~r~----s~~~srlsls~~~~s~~~~~~~~~----~~k~~fVvrAe   70 (191)
                      ||||+|||||+++||+ |.|||| +|+||||+.+.|.    .+.++++++|+. +|++|||+|++    .+|++||+|||
T Consensus         1 m~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~f~~r~~   79 (233)
T 3bbo_R            1 MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRA-SSNLFSSNFSSIFSFPARNSFVVRSE   79 (233)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcccccchhhhccccccccCCCCChhhcccccccccccccccccccceEeecc-ccccccccccchhccccccceeEeec
Confidence            9999999999999997 457775 5999999766443    222335555554 57788888877    49999999999


Q ss_pred             cchhhhcchhhHHHhHHHHhhccccchhhccccchhhhhhhcCCCCCCccchhhHHHHhhHHHHHHhhhcCCCCCCCCCc
Q 029551           71 ANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGD  150 (191)
Q Consensus        71 a~~ea~~~~~~~e~~~E~~~~~~d~v~~~Ege~~~v~eeeE~~~prkkrkk~g~IM~ILnkeavee~~~~R~iPdiRpGd  150 (191)
                      +++.  ++++.         ++.++|.++|+|.+..+|++| ++|+|+++|||++|++||+++|++....+.+|+|++||
T Consensus        80 ~~~~--~~~~~---------~~~~~~~e~~~~~~~~~~~~~-~~p~~~~~k~~~iM~~L~re~ie~~q~kkdiPeFr~GD  147 (233)
T 3bbo_R           80 AEDS--SDAPA---------ESVAVVAEEELPVESEAEAEE-RPPRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGD  147 (233)
T ss_dssp             -----------------------------------------------------CCSSSCSTTHHHHTTCCSCCSSSCCCS
T ss_pred             cccC--CCCcc---------cchhhcccccchhhhhhcccc-CCCCcchhHHHHHHHHHHHHHHHHHhhccCCCccCCCC
Confidence            9542  22221         122334444454444444444 99999999999999999999999999999999999999


Q ss_pred             EEEEEEeeecCCCCcceeeEEEee---ccCCceeEE
Q 029551          151 VVEIKLFLKIGVGCPFTKVLLCQG---KMLGSTLQF  183 (191)
Q Consensus       151 IVelklEVPEnkRR~~t~~~ic~~---~glgstf~~  183 (191)
                      +|+|.+.++|||.|.+.|.||||+   +|+++|||.
T Consensus       148 tV~V~vkI~E~KeRiQ~FeGVVIarr~~Gl~sTFTV  183 (233)
T 3bbo_R          148 IVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRI  183 (233)
T ss_dssp             CCCCCCCBCCCSSCCSCCBCCCCCSCBCCCSSSCBC
T ss_pred             EEEEEEEeccCcceecceEEEEEEEeCCCCCceEEE
Confidence            999999999999999999999996   999999986



>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q Back     alignment and structure
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ... Back     alignment and structure
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ... Back     alignment and structure
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query191
d2zjrm1108 Ribosomal protein L19 {Deinococcus radiodurans [Ta 99.04
d2gycn1114 Ribosomal protein L19 {Escherichia coli [TaxId: 56 98.85
d2j01t1138 Ribosomal protein L19 {Thermus thermophilus [TaxId 98.73
>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Deinococcus radiodurans [TaxId: 1299]
Probab=99.04  E-value=4.8e-11  Score=90.17  Aligned_cols=59  Identities=15%  Similarity=0.253  Sum_probs=50.3

Q ss_pred             cchhhHHHHhhHHHHHHhhhcCCCCCCCCCcEEEEEEeeecC-CCCcceeeEEEee---ccCCceeEEe
Q 029551          120 VKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLFLKIG-VGCPFTKVLLCQG---KMLGSTLQFE  184 (191)
Q Consensus       120 kk~g~IM~ILnkeavee~~~~R~iPdiRpGdIVelklEVPEn-kRR~~t~~~ic~~---~glgstf~~~  184 (191)
                      .+..+||+.++++.      .+.+|||+|||+|.+.+.+.|. |.|.+.|.|+||+   +|+++|||.-
T Consensus         6 i~~~~li~~ie~~~------~k~iP~f~~GDtV~V~~~i~Eg~k~RiQ~FeGvvI~~~~~g~~~tftvR   68 (108)
T d2zjrm1           6 INRGELLRGIEQDH------TRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVR   68 (108)
T ss_dssp             CCHHHHHHHTTGGG------CCCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEE
T ss_pred             eCHHHHHHHHHHHh------CcCCCCcCCCCEEEEEEEEcCCCccceEEEEEEEEEEeCCCccceEEEE
Confidence            34678888888764      3569999999999999999995 5699999999997   8999999974



>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure