Citrus Sinensis ID: 029609

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
MAWCSLRSLNVPTIDMGALRTRSRLAAVGIGCASVAGSSVWRSSCKKHSTPFACLSTSAVSNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALPNA
cccccccccccccccccccccccccccccccccccccccEEcccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHcccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEcccccHHHHHHHHHHHcccccccHHHHHHHHccccccEEEEEEEEcccc
ccccccccccccHHHHHHHHcccHHHHccccccEEEEccccccccccccccccccccccHcEEEEEEEcccccccccccEcEEEEccEEEEEEEccEccccccEccccHHHHHHHHHHHHHHHHHHccccHHHEEEEEEEEccHHHHHHHHHHHHHHccccccEEEEEEccEcHHHccEEEEEEEEEccc
mawcslrslnvptidmgalRTRSRLAAVGIGCASVagssvwrssckkhstpfaclstsavSNLKEavvtnkapaalgpysqaikanNLVFVSGVlglvpetgkfvsdTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAkyfpspaparaTYQVAALPLDARVEIECIAALPNA
mawcslrslnvptidmgALRTRSRLAAVGIGCASVAGSSVWRSSCKKHSTPFACLSTSAVSNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILkasgadysSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALPNA
MAWCSLRSLNVPTIDMGALRTRSRLAAVGIGCASVAGSSVWRSSCKKHSTPFACLSTSAVSNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALPNA
**WCSLRSLNVPTIDMGALRTRSRLAAVGIGCASVAGSSVWRSSCKKHSTPFACLSTSAVSNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAA****
********LNVPTIDMGALRTRSRLAAVGIGCASVAGSSVWRSSC***************SNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALPN*
MAWCSLRSLNVPTIDMGALRTRSRLAAVGIGCASVAGSSVWRSSCKKHSTPFACLSTSAVSNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALPNA
*AWCSLRSLNVPTIDMGALRTRSRLAAVGIGCASVAGSSVWRS******TPFACLSTSAVSNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALP**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAWCSLRSLNVPTIDMGALRTRSRLAAVGIGCASVAGSSVWRSSCKKHSTPFACLSTSAVSNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALPNA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query190 2.2.26 [Sep-21-2011]
P52760135 Ribonuclease UK114 OS=Mus yes no 0.657 0.925 0.552 1e-35
P52758137 Ribonuclease UK114 OS=Hom yes no 0.647 0.897 0.536 1e-35
Q10121171 RutC family protein C23G1 no no 0.636 0.707 0.557 1e-34
P52759137 Ribonuclease UK114 OS=Rat yes no 0.657 0.912 0.536 3e-34
Q3T114137 Ribonuclease UK114 OS=Bos yes no 0.657 0.912 0.536 4e-34
P80601137 Ribonuclease UK114 OS=Cap N/A no 0.657 0.912 0.528 3e-33
O25598125 RutC family protein HP_09 yes no 0.647 0.984 0.577 9e-32
Q9ZKQ6125 RutC family protein jhp_0 yes no 0.647 0.984 0.577 9e-32
P55654126 RutC family protein y4sK yes no 0.647 0.976 0.528 3e-30
O58584126 RutC family protein PH085 yes no 0.647 0.976 0.479 9e-29
>sp|P52760|UK114_MOUSE Ribonuclease UK114 OS=Mus musculus GN=Hrsp12 PE=1 SV=3 Back     alignment and function desciption
 Score =  149 bits (376), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/125 (55%), Positives = 95/125 (76%)

Query: 61  SNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNI 120
           S +++ + T KAPAA+GPYSQA++ +  +++SG +GL P +G+ V   + ++ +Q LKN+
Sbjct: 3   SIIRKVISTTKAPAAIGPYSQAVQVDRTIYISGQVGLDPSSGQLVPGGVVEEAKQALKNL 62

Query: 121 GEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVE 180
           GEILKA+G D+++VVKTT+LLAD+ DF TVNEIY  YF    PARA YQVAALP  +RVE
Sbjct: 63  GEILKAAGCDFNNVVKTTVLLADMNDFGTVNEIYKTYFQGSLPARAAYQVAALPRGSRVE 122

Query: 181 IECIA 185
           IE IA
Sbjct: 123 IEAIA 127
Endoribonuclease responsible for the inhibition of the translation by cleaving mRNA. Inhibits cell-free protein synthesis. Cleaves phosphodiester bonds only in single-stranded RNA.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -
>sp|P52758|UK114_HUMAN Ribonuclease UK114 OS=Homo sapiens GN=HRSP12 PE=1 SV=1 Back     alignment and function description
>sp|Q10121|YSD2_CAEEL RutC family protein C23G10.2 OS=Caenorhabditis elegans GN=C23G10.2 PE=3 SV=3 Back     alignment and function description
>sp|P52759|UK114_RAT Ribonuclease UK114 OS=Rattus norvegicus GN=Hrsp12 PE=1 SV=3 Back     alignment and function description
>sp|Q3T114|UK114_BOVIN Ribonuclease UK114 OS=Bos taurus GN=HRSP12 PE=2 SV=3 Back     alignment and function description
>sp|P80601|UK114_CAPHI Ribonuclease UK114 OS=Capra hircus GN=HRSP12 PE=1 SV=3 Back     alignment and function description
>sp|O25598|Y944_HELPY RutC family protein HP_0944 OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=HP_0944 PE=3 SV=1 Back     alignment and function description
>sp|Q9ZKQ6|Y944_HELPJ RutC family protein jhp_0879 OS=Helicobacter pylori (strain J99) GN=jhp_0879 PE=3 SV=1 Back     alignment and function description
>sp|P55654|Y4SK_RHISN RutC family protein y4sK OS=Rhizobium sp. (strain NGR234) GN=NGR_a01620 PE=3 SV=1 Back     alignment and function description
>sp|O58584|Y854_PYRHO RutC family protein PH0854 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0854 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query190
449470455187 PREDICTED: ribonuclease UK114-like [Cucu 0.978 0.994 0.739 9e-75
449518761187 PREDICTED: ribonuclease UK114-like [Cucu 0.978 0.994 0.739 1e-74
194466266189 perchloric acid soluble translation inhi 0.978 0.984 0.727 2e-74
356567350187 PREDICTED: ribonuclease UK114-like [Glyc 0.978 0.994 0.728 7e-74
351725031188 uncharacterized protein LOC100527559 [Gl 0.973 0.984 0.727 1e-73
356527048187 PREDICTED: ribonuclease UK114-like [Glyc 0.973 0.989 0.720 4e-72
224061429201 predicted protein [Populus trichocarpa] 0.994 0.940 0.680 1e-71
297737434188 unnamed protein product [Vitis vinifera] 0.978 0.989 0.761 3e-71
225460977191 PREDICTED: ribonuclease UK114-like [Viti 0.978 0.973 0.761 3e-71
118483410201 unknown [Populus trichocarpa] 0.994 0.940 0.675 3e-71
>gi|449470455|ref|XP_004152932.1| PREDICTED: ribonuclease UK114-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  284 bits (727), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 139/188 (73%), Positives = 161/188 (85%), Gaps = 2/188 (1%)

Query: 1   MAWCSLRSLNVPTIDMGALRTRSRLAAVGIGCASVAGSSVWRSS-CKKHSTPFACLSTSA 59
           MAWC+ R+ ++P  D+ ALR++S LA VG+GC SVAG+++WRSS   K   PFA L  S 
Sbjct: 1   MAWCAARTFHMPAFDVTALRSKSPLA-VGVGCVSVAGTTLWRSSSTSKRQIPFASLGIST 59

Query: 60  VSNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKN 119
            S++KEAV T+KAPAALGPYSQAIKANNL+FVSGVLGL PETGKFVSD +EDQTEQVLKN
Sbjct: 60  SSSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKN 119

Query: 120 IGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARV 179
           +GEILKA G+ YSSVVKTTI+LADLKDFK VNEIYAKYFPSPAPAR+TY+VA LPLDA+V
Sbjct: 120 MGEILKAGGSSYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKV 179

Query: 180 EIECIAAL 187
           EIECIA L
Sbjct: 180 EIECIATL 187

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449518761|ref|XP_004166404.1| PREDICTED: ribonuclease UK114-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|194466266|gb|ACF74362.1| perchloric acid soluble translation inhibitor protein [Arachis hypogaea] Back     alignment and taxonomy information
>gi|356567350|ref|XP_003551884.1| PREDICTED: ribonuclease UK114-like [Glycine max] Back     alignment and taxonomy information
>gi|351725031|ref|NP_001237846.1| uncharacterized protein LOC100527559 [Glycine max] gi|255632612|gb|ACU16656.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356527048|ref|XP_003532126.1| PREDICTED: ribonuclease UK114-like [Glycine max] Back     alignment and taxonomy information
>gi|224061429|ref|XP_002300475.1| predicted protein [Populus trichocarpa] gi|118485546|gb|ABK94625.1| unknown [Populus trichocarpa] gi|222847733|gb|EEE85280.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297737434|emb|CBI26635.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225460977|ref|XP_002280251.1| PREDICTED: ribonuclease UK114-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|118483410|gb|ABK93605.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query190
TAIR|locus:2092374187 AT3G20390 "AT3G20390" [Arabido 0.973 0.989 0.735 1.9e-67
MGI|MGI:1095401135 Hrsp12 "heat-responsive protei 0.657 0.925 0.552 7.4e-34
UNIPROTKB|P52758137 HRSP12 "Ribonuclease UK114" [H 0.657 0.912 0.536 1.2e-33
RGD|70940137 Hrsp12 "heat-responsive protei 0.657 0.912 0.536 1.1e-32
UNIPROTKB|Q3T114137 HRSP12 "Ribonuclease UK114" [B 0.657 0.912 0.536 1.8e-32
UNIPROTKB|E1C7E1132 HRSP12 "Uncharacterized protei 0.657 0.946 0.528 4.7e-32
UNIPROTKB|F1S0M2137 HRSP12 "Uncharacterized protei 0.647 0.897 0.528 7.7e-32
TIGR_CMR|CHY_2460125 CHY_2460 "endoribonuclease L-P 0.647 0.984 0.504 4.4e-29
UNIPROTKB|H0YB34148 HRSP12 "Ribonuclease UK114" [H 0.557 0.716 0.547 3.1e-28
ZFIN|ZDB-GENE-040718-315135 hrsp12 "heat-responsive protei 0.652 0.918 0.48 3.1e-28
TAIR|locus:2092374 AT3G20390 "AT3G20390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 139/189 (73%), Positives = 161/189 (85%)

Query:     1 MAWCSLRSLNVPTIDMG-ALR-TRSRLAAVGIGCASVAGSSVWRSSCKKHSTPFACLSTS 58
             M W   RS+N PT+D+  ALR TR+ L A G+GCA+ AG S++R S +  S PFA LS S
Sbjct:     1 MTWSVFRSINTPTLDLSTALRSTRTPLVAAGVGCATFAGVSLFRMSSR--SPPFASLSVS 58

Query:    59 AVSNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLK 118
             A S  KE V T KAPAALGPYSQAIKANNLVF+SGVLGL+PETGKFVS+++EDQTEQVLK
Sbjct:    59 ASSVKKEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVLK 118

Query:   119 NIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDAR 178
             N+GEILKASGADYSSVVKTTI+LADL DFKTVNEIYAKYFP+P+PAR+TYQVAALPL+A+
Sbjct:   119 NMGEILKASGADYSSVVKTTIMLADLADFKTVNEIYAKYFPAPSPARSTYQVAALPLNAK 178

Query:   179 VEIECIAAL 187
             +EIECIA L
Sbjct:   179 IEIECIATL 187
GO:0004521 "endoribonuclease activity" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0005773 "vacuole" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0005739 "mitochondrion" evidence=IDA
GO:0009536 "plastid" evidence=IDA
GO:0009579 "thylakoid" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0019761 "glucosinolate biosynthetic process" evidence=RCA
MGI|MGI:1095401 Hrsp12 "heat-responsive protein 12" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P52758 HRSP12 "Ribonuclease UK114" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|70940 Hrsp12 "heat-responsive protein 12" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T114 HRSP12 "Ribonuclease UK114" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1C7E1 HRSP12 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1S0M2 HRSP12 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2460 CHY_2460 "endoribonuclease L-PSP family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|H0YB34 HRSP12 "Ribonuclease UK114" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040718-315 hrsp12 "heat-responsive protein 12" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P55654Y4SK_RHISNNo assigned EC number0.52840.64730.9761yesno
P52759UK114_RAT3, ., 1, ., -, ., -0.5360.65780.9124yesno
P52758UK114_HUMAN3, ., 1, ., -, ., -0.53650.64730.8978yesno
O25598Y944_HELPYNo assigned EC number0.57720.64730.984yesno
Q9ZKQ6Y944_HELPJNo assigned EC number0.57720.64730.984yesno
Q3T114UK114_BOVIN3, ., 1, ., -, ., -0.5360.65780.9124yesno
P52760UK114_MOUSE3, ., 1, ., -, ., -0.5520.65780.9259yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query190
TIGR00004124 TIGR00004, TIGR00004, reactive intermediate/imine 3e-63
pfam01042120 pfam01042, Ribonuc_L-PSP, Endoribonuclease L-PSP 4e-54
COG0251130 COG0251, TdcF, Putative translation initiation inh 1e-46
cd00448107 cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, 7e-42
PRK11401129 PRK11401, PRK11401, putative endoribonuclease L-PS 2e-28
cd06150105 cd06150, YjgF_YER057c_UK114_like_2, This group of 5e-23
cd06154119 cd06154, YjgF_YER057c_UK114_like_6, This group of 5e-21
TIGR03610126 TIGR03610, RutC, pyrimidine utilization protein C 1e-19
cd06155101 cd06155, eu_AANH_C_1, A group of hypothetical euka 4e-18
cd02198111 cd02198, YjgH_like, YjgH belongs to a large family 2e-16
cd06152114 cd06152, YjgF_YER057c_UK114_like_4, YjgF, YER057c, 6e-15
cd06151126 cd06151, YjgF_YER057c_UK114_like_3, This group of 3e-11
cd06156118 cd06156, eu_AANH_C_2, A group of hypothetical euka 1e-07
cd02199142 cd02199, YjgF_YER057c_UK114_like_1, This group of 2e-05
cd06153114 cd06153, YjgF_YER057c_UK114_like_5, This group of 2e-05
>gnl|CDD|129116 TIGR00004, TIGR00004, reactive intermediate/imine deaminase Back     alignment and domain information 
 Score =  190 bits (486), Expect = 3e-63
 Identities = 66/124 (53%), Positives = 83/124 (66%)

Query: 64  KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEI 123
           K+ + T+KAPAA+GPYSQA+K  N V+VSG + L P TG+ V   I +Q EQVL+N+  I
Sbjct: 1   KKIISTDKAPAAIGPYSQAVKVGNTVYVSGQIPLDPSTGELVGGDIAEQAEQVLENLKAI 60

Query: 124 LKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIEC 183
           L+A+G     VVKTT+ L DL DF  VNE+Y +YF    PAR+  QVAALP    VEIE 
Sbjct: 61  LEAAGLSLDDVVKTTVFLTDLNDFAEVNEVYGQYFDEHYPARSAVQVAALPKGVLVEIEA 120

Query: 184 IAAL 187
           IA  
Sbjct: 121 IAVK 124

This protein was described initially as an inhibitor of protein synthesis intiation, then as an endoribonuclease active on single-stranded mRNA, endoribonuclease L-PSP. Members of this family, conserved in all domains of life and often with several members per bacterial genome, appear to catalyze a reaction that minimizes toxic by-products from reactions catalyzed by pyridoxal phosphate-dependent enzymes [Cellular processes, Other]. Length = 124
>gnl|CDD|216262 pfam01042, Ribonuc_L-PSP, Endoribonuclease L-PSP Back     alignment and domain information
>gnl|CDD|223329 COG0251, TdcF, Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|100004 cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function Back     alignment and domain information
>gnl|CDD|105214 PRK11401, PRK11401, putative endoribonuclease L-PSP; Provisional Back     alignment and domain information
>gnl|CDD|100007 cd06150, YjgF_YER057c_UK114_like_2, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function Back     alignment and domain information
>gnl|CDD|100011 cd06154, YjgF_YER057c_UK114_like_6, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function Back     alignment and domain information
>gnl|CDD|211850 TIGR03610, RutC, pyrimidine utilization protein C Back     alignment and domain information
>gnl|CDD|100012 cd06155, eu_AANH_C_1, A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains Back     alignment and domain information
>gnl|CDD|100005 cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function Back     alignment and domain information
>gnl|CDD|100009 cd06152, YjgF_YER057c_UK114_like_4, YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function Back     alignment and domain information
>gnl|CDD|100008 cd06151, YjgF_YER057c_UK114_like_3, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function Back     alignment and domain information
>gnl|CDD|100013 cd06156, eu_AANH_C_2, A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains Back     alignment and domain information
>gnl|CDD|100006 cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function Back     alignment and domain information
>gnl|CDD|100010 cd06153, YjgF_YER057c_UK114_like_5, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 190
TIGR03610127 RutC pyrimidine utilization protein C. This protei 100.0
TIGR00004124 endoribonuclease L-PSP, putative. This protein was 100.0
COG0251130 TdcF Putative translation initiation inhibitor, yj 100.0
PRK11401129 putative endoribonuclease L-PSP; Provisional 100.0
PF01042121 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: I 100.0
cd06154119 YjgF_YER057c_UK114_like_6 This group of proteins b 100.0
cd06152114 YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 100.0
cd02199142 YjgF_YER057c_UK114_like_1 This group of proteins b 99.98
cd02198111 YjgH_like YjgH belongs to a large family of YjgF/Y 99.98
cd06150105 YjgF_YER057c_UK114_like_2 This group of proteins b 99.97
cd06156118 eu_AANH_C_2 A group of hypothetical eukaryotic pro 99.97
cd06153114 YjgF_YER057c_UK114_like_5 This group of proteins b 99.96
cd00448107 YjgF_YER057c_UK114_family YjgF, YER057c, and UK114 99.96
cd06155101 eu_AANH_C_1 A group of hypothetical eukaryotic pro 99.96
cd06151126 YjgF_YER057c_UK114_like_3 This group of proteins b 99.96
KOG2317138 consensus Putative translation initiation inhibito 99.95
PF14588148 YjgF_endoribonc: YjgF/chorismate_mutase-like, puta 99.78
>TIGR03610 RutC pyrimidine utilization protein C Back     alignment and domain information 
Probab=100.00  E-value=1.5e-35  Score=226.80  Aligned_cols=123  Identities=28%  Similarity=0.509  Sum_probs=115.2

Q ss_pred             hhhcCCCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCc
Q 029609           65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADL  144 (190)
Q Consensus        65 ~~i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~  144 (190)
                      +.++++..|.+.++|||++++|+++|+|||+|+|++++.+.++|+++|++++|+||+++|+++|++++||+++++|++|+
T Consensus         4 ~~i~~~~~~~~~~~ys~av~~g~~v~vSGq~~~d~~g~~~~~~d~~~Q~~~~l~ni~~iL~~aG~~~~dvv~~~iyl~d~   83 (127)
T TIGR03610         4 KVIIPAGTSKPLAPFVPGTLADGVVYVSGTLPFDKDNNVVHVGDAAAQTRHVLETIKSVIETAGGTMDDVTFNHIFIRDW   83 (127)
T ss_pred             eEeCCCCCCCCCCCCCCeEEECCEEEEeccCCcCCCCCeeCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCH
Confidence            45789999999999999999999999999999998655445789999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHhCCCCCCeeEEEEcCCCCCCceEEEEEEEEe
Q 029609          145 KDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL  187 (190)
Q Consensus       145 ~d~~~~~~v~~~~f~~~~Part~v~V~~L~~~~lVEIe~iA~~  187 (190)
                      +||+.+|++|.+||++++|+||++++..++++++||||++|++
T Consensus        84 ~~~~~~~~~~~~~f~~~~Pa~t~v~v~l~~p~~lVEIe~vA~~  126 (127)
T TIGR03610        84 ADYAAINEVYAEYFPGEKPARYCIQCGLVKPDALVEIASVAHI  126 (127)
T ss_pred             HHHHHHHHHHHHHcCCCCCcEEEEEeccCCCCCEEEEEEEEEe
Confidence            9999999999999998899999999977788999999999986

This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.
>TIGR00004 endoribonuclease L-PSP, putative Back     alignment and domain information
>COG0251 TdcF Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK11401 putative endoribonuclease L-PSP; Provisional Back     alignment and domain information
>PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA [] Back     alignment and domain information
>cd06154 YjgF_YER057c_UK114_like_6 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function Back     alignment and domain information
>cd06152 YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function Back     alignment and domain information
>cd02199 YjgF_YER057c_UK114_like_1 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function Back     alignment and domain information
>cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function Back     alignment and domain information
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function Back     alignment and domain information
>cd06156 eu_AANH_C_2 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains Back     alignment and domain information
>cd06153 YjgF_YER057c_UK114_like_5 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function Back     alignment and domain information
>cd00448 YjgF_YER057c_UK114_family YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function Back     alignment and domain information
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains Back     alignment and domain information
>cd06151 YjgF_YER057c_UK114_like_3 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function Back     alignment and domain information
>KOG2317 consensus Putative translation initiation inhibitor UK114/IBM1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF14588 YjgF_endoribonc: YjgF/chorismate_mutase-like, putative endoribonuclease; PDB: 2OTM_B 3D01_D Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query190
1oni_A138 Crystal Structure Of A Human P14.5, A Translational 1e-36
1qah_A136 Crystal Structure Of Perchloric Acid Soluble Protei 3e-35
1nq3_A136 Crystal Structure Of The Mammalian Tumor Associated 3e-34
3l7q_A125 Crystal Structure Of Aldr From Streptococcus Mutans 1e-30
2csl_A124 Crystal Structure Of Ttha0137 From Thermus Thermoph 5e-30
2dyy_A126 Crystal Structure Of Putative Translation Initiatio 7e-30
1xrg_A156 Conserved Hypothetical Protein From Clostridium The 2e-28
2b33_A140 Crystal Structure Of A Putative Endoribonuclease (t 5e-28
1qd9_A124 Bacillus Subtilis Yabj Length = 124 6e-28
3k0t_A143 Crystal Structure Of Pspto -Psp Protein In Complex 1e-24
3mqw_A148 Crystal Structure Of A Putative Endoribonuclease L- 1e-24
3m4s_A148 Crystal Structure Of A Putative Endoribonuclease L- 1e-24
1x25_A128 Crystal Structure Of A Member Of Yjgf Family From S 2e-24
3m1x_A148 Crystal Structure Of A Putative Endoribonuclease L- 4e-24
2uyn_A129 Crystal Structure Of E. Coli Tdcf With Bound 2-Keto 2e-22
3quw_A153 Crystal Structure Of Yeast Mmf1 Length = 153 2e-22
2uyj_A129 Crystal Structure Of E. Coli Tdcf With Bound Ethyle 2e-22
3vcz_A153 1.80 Angstrom Resolution Crystal Structure Of A Put 1e-20
1qu9_A128 1.2 A Crystal Structure Of Yjgf Gene Product From E 2e-20
1jd1_A129 Crystal Structure Of Yeo7_yeast Length = 129 2e-20
2cwj_A123 Crystal Structure Of Ape1501, A Putative Endonuclea 5e-20
3r0p_A127 Crystal Structure Of L-Psp Putative Endoribonucleas 9e-20
1j7h_A130 Solution Structure Of Hi0719, A Hypothetical Protei 1e-19
3v4d_A134 Crystal Structure Of Rutc Protein A Member Of The Y 5e-14
3k12_A122 Crystal Structure Of An Uncharacterized Protein A6v 7e-10
3kjj_A128 Crystal Structure Of Nmb1025, A Member Of Yjgf Prot 2e-08
3i7t_A149 Crystal Structure Of Rv2704, A Member Of Highly Con 2e-06
3gtz_A124 Crystal Structure Of A Putative Translation Initiat 9e-06
>pdb|1ONI|A Chain A, Crystal Structure Of A Human P14.5, A Translational Inhibitor Reveals Different Mode Of Ligand Binding Near The Invariant Residues Of The Yjgf/uk114 Protein Family Length = 138 Back     alignment and structure 
Iteration: 1

 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 94/123 (76%)
Query: 63  LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGE 122
           ++  + T KAP A+GPYSQA+  +  +++SG +G+ P +G+ VS  + ++ +Q LKN+GE
Sbjct: 6   IRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGE 65
Query: 123 ILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIE 182
           ILKA+G D+++VVKTT+LLAD+ DF TVNEIY +YF S  PARA YQVAALP  +R+EIE
Sbjct: 66  ILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIE 125
Query: 183 CIA 185
            +A
Sbjct: 126 AVA 128
>pdb|1QAH|A Chain A, Crystal Structure Of Perchloric Acid Soluble Protein-A Translational Inhibitor Length = 136 Back     alignment and structure
>pdb|1NQ3|A Chain A, Crystal Structure Of The Mammalian Tumor Associated Antigen Uk114 Length = 136 Back     alignment and structure
>pdb|3L7Q|A Chain A, Crystal Structure Of Aldr From Streptococcus Mutans Length = 125 Back     alignment and structure
>pdb|2CSL|A Chain A, Crystal Structure Of Ttha0137 From Thermus Thermophilus Hb8 Length = 124 Back     alignment and structure
>pdb|2DYY|A Chain A, Crystal Structure Of Putative Translation Initiation Inhibitor Ph0854 From Pyrococcus Horikoshii Length = 126 Back     alignment and structure
>pdb|1XRG|A Chain A, Conserved Hypothetical Protein From Clostridium Thermocellum Cth-2968 Length = 156 Back     alignment and structure
>pdb|2B33|A Chain A, Crystal Structure Of A Putative Endoribonuclease (tm0215) From Thermotoga Maritima Msb8 At 2.30 A Resolution Length = 140 Back     alignment and structure
>pdb|1QD9|A Chain A, Bacillus Subtilis Yabj Length = 124 Back     alignment and structure
>pdb|3K0T|A Chain A, Crystal Structure Of Pspto -Psp Protein In Complex With D-Be From Pseudomonas Syringae Pv. Tomato Str. Dc3000 Length = 143 Back     alignment and structure
>pdb|3MQW|A Chain A, Crystal Structure Of A Putative Endoribonuclease L-Psp From Histolytica With Higher Solvent Content And An Ordered N-Te Length = 148 Back     alignment and structure
>pdb|3M4S|A Chain A, Crystal Structure Of A Putative Endoribonuclease L-Psp From Entamoeba Histolytica, Orthorhombic Form Length = 148 Back     alignment and structure
>pdb|1X25|A Chain A, Crystal Structure Of A Member Of Yjgf Family From Sulfolobus Tokodaii (st0811) Length = 128 Back     alignment and structure
>pdb|3M1X|A Chain A, Crystal Structure Of A Putative Endoribonuclease L-Psp From Entamoeba Histolytica, Rhomobohedral Form Length = 148 Back     alignment and structure
>pdb|2UYN|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound 2-Ketobutyrate Length = 129 Back     alignment and structure
>pdb|3QUW|A Chain A, Crystal Structure Of Yeast Mmf1 Length = 153 Back     alignment and structure
>pdb|2UYJ|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound Ethylene Glycol Length = 129 Back     alignment and structure
>pdb|3VCZ|A Chain A, 1.80 Angstrom Resolution Crystal Structure Of A Putative Translation Initiation Inhibitor From Vibrio Vulnificus Cmcp6 Length = 153 Back     alignment and structure
>pdb|1QU9|A Chain A, 1.2 A Crystal Structure Of Yjgf Gene Product From E. Coli Length = 128 Back     alignment and structure
>pdb|1JD1|A Chain A, Crystal Structure Of Yeo7_yeast Length = 129 Back     alignment and structure
>pdb|2CWJ|A Chain A, Crystal Structure Of Ape1501, A Putative Endonuclease From Aeropyrum Pernix Length = 123 Back     alignment and structure
>pdb|3R0P|A Chain A, Crystal Structure Of L-Psp Putative Endoribonuclease From Uncultured Organism Length = 127 Back     alignment and structure
>pdb|1J7H|A Chain A, Solution Structure Of Hi0719, A Hypothetical Protein From Haemophilus Influenzae Length = 130 Back     alignment and structure
>pdb|3V4D|A Chain A, Crystal Structure Of Rutc Protein A Member Of The Yjgf Family From E.Coli Length = 134 Back     alignment and structure
>pdb|3K12|A Chain A, Crystal Structure Of An Uncharacterized Protein A6v7t0 From Pseudomonas Aeruginosa Length = 122 Back     alignment and structure
>pdb|3KJJ|A Chain A, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein Family, From Neisseria Meningitidis (Hexagonal Crystal Form) Length = 128 Back     alignment and structure
>pdb|3I7T|A Chain A, Crystal Structure Of Rv2704, A Member Of Highly Conserved YjgfYER057CUK114 FAMILY, FROM MYCOBACTERIUM TUBERCULOSIS Length = 149 Back     alignment and structure
>pdb|3GTZ|A Chain A, Crystal Structure Of A Putative Translation Initiation Inhibitor From Salmonella Typhimurium Length = 124 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query190
3v4d_A134 Aminoacrylate peracid reductase RUTC; structural g 1e-73
2b33_A140 Protein synthesis inhibitor, putative; putative en 7e-73
3m1x_A148 Putative endoribonuclease L-PSP; structural genomi 1e-72
3r0p_A127 L-PSP putative endoribonuclease; hydrolase; 1.90A 3e-72
1xrg_A156 Putative translation initiation inhibitor, YJGF fa 4e-72
2dyy_A126 UPF0076 protein PH0854; putative translation initi 5e-72
3l7q_A125 Putative translation initiation inhibitor, ALDR R 9e-72
1x25_A128 Hypothetical UPF0076 protein ST0811; YJGF-like pro 1e-71
1qah_A136 Perchloric acid soluble protein; alpha-beta struct 3e-71
3quw_A153 Protein MMF1; chorismate mutase fold, intact mitoc 2e-70
3k0t_A143 Endoribonuclease L-PSP, putative; glucose binding, 4e-70
2cwj_A123 Putative endonuclease; hydrolase, endoribonucrease 1e-69
1jd1_A129 Hypothetical 13.9 kDa protein in FCY2-PET117 inter 3e-69
1qd9_A124 Purine regulatory protein YABJ; perchloric acid so 5e-69
2cvl_A124 TTHA0137, protein translation initiation inhibitor 4e-68
3lme_A138 Possible translation initiation inhibitor; structu 6e-68
3vcz_A153 Endoribonuclease L-PSP; virulence, pathogenesis, i 2e-67
1qu9_A128 YJGF protein; structural genomics; HET: CSP; 1.20A 3e-67
3lyb_A165 Putative endoribonuclease; structural genomics, PS 1e-60
1pf5_A131 Hypothetical protein YJGH; structural genomics, be 1e-57
3i7t_A149 RV2704, putative uncharacterized protein; siras, Y 4e-56
3i3f_A141 Hypothetical protein; structural genomics, niaid, 8e-53
2ig8_A144 Hypothetical protein PA3499; structural genomics, 2e-52
2ewc_A126 Conserved hypothetical protein; YJGF proteins fami 2e-50
3kjj_A128 NMB1025 protein; YJGF protein family, OPPF, struct 2e-49
3k12_A122 Uncharacterized protein A6V7T0; structural genomic 2e-49
3gtz_A124 Putative translation initiation inhibitor; structu 1e-47
3d01_A165 Uncharacterized protein; protein with unknown func 5e-08
2otm_A154 Hypothetical protein; structural genomics, joint c 6e-07
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 3e-04
>3v4d_A Aminoacrylate peracid reductase RUTC; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 1.95A {Escherichia coli O6} Length = 134 Back     alignment and structure
 Score =  217 bits (554), Expect = 1e-73
 Identities = 39/125 (31%), Positives = 64/125 (51%)

Query: 64  KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEI 123
           K  ++   + A L P+     A+ +V+VSG L          +D  + QT  VL+ I ++
Sbjct: 9   KSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKV 68

Query: 124 LKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIEC 183
           ++ +G   + V   +I + D K++  +NEIYA++FP   PAR   Q   +  DA VEI  
Sbjct: 69  IETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIAT 128

Query: 184 IAALP 188
           IA + 
Sbjct: 129 IAHIA 133
>2b33_A Protein synthesis inhibitor, putative; putative endoribonuclease, STRU genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: d.79.1.1 Length = 140 Back     alignment and structure
>3m1x_A Putative endoribonuclease L-PSP; structural genomics, seattle structural genomics center for infectious disease, ssgcid, unknown function; HET: FLC; 1.20A {Entamoeba histolytica} PDB: 3m4s_A 3mqw_A* Length = 148 Back     alignment and structure
>3r0p_A L-PSP putative endoribonuclease; hydrolase; 1.90A {Uncultured organism} Length = 127 Back     alignment and structure
>1xrg_A Putative translation initiation inhibitor, YJGF family; conserved hypothetical protein, protein structure initiative, PSI; 2.20A {Clostridium thermocellum} SCOP: d.79.1.1 Length = 156 Back     alignment and structure
>2dyy_A UPF0076 protein PH0854; putative translation initiation inhibitor, trimer, structural genomics, NPPSFA; 2.60A {Pyrococcus horikoshii} Length = 126 Back     alignment and structure
>3l7q_A Putative translation initiation inhibitor, ALDR R like protein; translation initiation inhibitor regulator-like; 2.50A {Streptococcus mutans} Length = 125 Back     alignment and structure
>1x25_A Hypothetical UPF0076 protein ST0811; YJGF-like protein, archaea, structural genomics, UNK function; 2.00A {Sulfolobus tokodaii} SCOP: d.79.1.1 Length = 128 Back     alignment and structure
>1qah_A Perchloric acid soluble protein; alpha-beta structure; 1.80A {Rattus norvegicus} SCOP: d.79.1.1 PDB: 1oni_A 1nq3_A Length = 136 Back     alignment and structure
>3quw_A Protein MMF1; chorismate mutase fold, intact mitochondria maintenance, mitochondrial protein, protein binding; 1.75A {Saccharomyces cerevisiae} Length = 153 Back     alignment and structure
>3k0t_A Endoribonuclease L-PSP, putative; glucose binding, ER stressor, sugar binding protein; HET: BGC; 2.10A {Pseudomonas syringae PV} Length = 143 Back     alignment and structure
>2cwj_A Putative endonuclease; hydrolase, endoribonucrease, structural GE NPPSFA, national project on protein structural and function analyses; 3.60A {Aeropyrum pernix} SCOP: d.79.1.1 Length = 123 Back     alignment and structure
>1jd1_A Hypothetical 13.9 kDa protein in FCY2-PET117 intergenic region; translation inhibitor, structural genomics, PSI; 1.70A {Saccharomyces cerevisiae} SCOP: d.79.1.1 Length = 129 Back     alignment and structure
>1qd9_A Purine regulatory protein YABJ; perchloric acid soluble protein, purine regulation, YJGF/YER057C family, gene regulation; 1.70A {Bacillus subtilis} SCOP: d.79.1.1 Length = 124 Back     alignment and structure
>2cvl_A TTHA0137, protein translation initiation inhibitor; structural genomics, NPPSFA; 1.65A {Thermus thermophilus} SCOP: d.79.1.1 PDB: 2csl_A 2cw4_A Length = 124 Back     alignment and structure
>3lme_A Possible translation initiation inhibitor; structural genomics, RPA2473, PSI-2, protein structure initiative; 2.74A {Rhodopseudomonas palustris} Length = 138 Back     alignment and structure
>3vcz_A Endoribonuclease L-PSP; virulence, pathogenesis, infectious diseases, center for STR genomics of infectious diseases, csgid, translation; HET: GOL; 1.80A {Vibrio vulnificus} Length = 153 Back     alignment and structure
>1qu9_A YJGF protein; structural genomics; HET: CSP; 1.20A {Escherichia coli} SCOP: d.79.1.1 PDB: 1j7h_A 2uyk_A 2uyj_A 2uyn_A* 2uyp_A Length = 128 Back     alignment and structure
>3lyb_A Putative endoribonuclease; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.66A {Klebsiella pneumoniae} Length = 165 Back     alignment and structure
>1pf5_A Hypothetical protein YJGH; structural genomics, beta barrel, PSI, protein structure INI midwest center for structural genomics, MCSG; 2.50A {Escherichia coli} SCOP: d.79.1.1 Length = 131 Back     alignment and structure
>3i7t_A RV2704, putative uncharacterized protein; siras, YJGF/YER057C/UK114, homotrimer, quick SOAK NAI deriva unknown function; 1.93A {Mycobacterium tuberculosis} Length = 149 Back     alignment and structure
>3i3f_A Hypothetical protein; structural genomics, niaid, decode, infectious seattle structural genomics center for infectious disease, unknown function; 1.35A {Giardia lamblia} Length = 141 Back     alignment and structure
>2ig8_A Hypothetical protein PA3499; structural genomics, PSI-2, Pro structure initiative; 1.90A {Pseudomonas aeruginosa} Length = 144 Back     alignment and structure
>2ewc_A Conserved hypothetical protein; YJGF proteins family, COG025 putative translation initiation inhibitor; 2.15A {Streptococcus pyogenes} SCOP: d.79.1.1 Length = 126 Back     alignment and structure
>3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility, UN function; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A Length = 128 Back     alignment and structure
>3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown function, PSI-2, protein struct initiative; 1.49A {Pseudomonas aeruginosa} Length = 122 Back     alignment and structure
>3gtz_A Putative translation initiation inhibitor; structural genomics, unknown function, PSI-2, protein struct initiative; 2.50A {Salmonella typhimurium} Length = 124 Back     alignment and structure
>3d01_A Uncharacterized protein; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; HET: PG5; 1.70A {Agrobacterium tumefaciens str} Length = 165 Back     alignment and structure
>2otm_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.85A {Shewanella oneidensis} SCOP: d.79.1.1 Length = 154 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query190
3l7q_A125 Putative translation initiation inhibitor, ALDR R 100.0
3r0p_A127 L-PSP putative endoribonuclease; hydrolase; 1.90A 100.0
2dyy_A126 UPF0076 protein PH0854; putative translation initi 100.0
3v4d_A134 Aminoacrylate peracid reductase RUTC; structural g 100.0
1qah_A136 Perchloric acid soluble protein; alpha-beta struct 100.0
2b33_A140 Protein synthesis inhibitor, putative; putative en 100.0
1x25_A128 Hypothetical UPF0076 protein ST0811; YJGF-like pro 100.0
3quw_A153 Protein MMF1; chorismate mutase fold, intact mitoc 100.0
3k0t_A143 Endoribonuclease L-PSP, putative; glucose binding, 100.0
2cvl_A124 TTHA0137, protein translation initiation inhibitor 100.0
1jd1_A129 Hypothetical 13.9 kDa protein in FCY2-PET117 inter 100.0
1qd9_A124 Purine regulatory protein YABJ; perchloric acid so 100.0
3m1x_A148 Putative endoribonuclease L-PSP; structural genomi 100.0
1qu9_A128 YJGF protein; structural genomics; HET: CSP; 1.20A 100.0
2cwj_A123 Putative endonuclease; hydrolase, endoribonucrease 100.0
1xrg_A156 Putative translation initiation inhibitor, YJGF fa 100.0
3vcz_A153 Endoribonuclease L-PSP; virulence, pathogenesis, i 100.0
3lme_A138 Possible translation initiation inhibitor; structu 100.0
3lyb_A165 Putative endoribonuclease; structural genomics, PS 100.0
1pf5_A131 Hypothetical protein YJGH; structural genomics, be 100.0
3i7t_A149 RV2704, putative uncharacterized protein; siras, Y 100.0
2ig8_A144 Hypothetical protein PA3499; structural genomics, 100.0
2otm_A154 Hypothetical protein; structural genomics, joint c 100.0
3i3f_A141 Hypothetical protein; structural genomics, niaid, 100.0
3d01_A165 Uncharacterized protein; protein with unknown func 100.0
3kjj_A128 NMB1025 protein; YJGF protein family, OPPF, struct 100.0
2ewc_A126 Conserved hypothetical protein; YJGF proteins fami 100.0
3k12_A122 Uncharacterized protein A6V7T0; structural genomic 100.0
3gtz_A124 Putative translation initiation inhibitor; structu 99.98
>3l7q_A Putative translation initiation inhibitor, ALDR R like protein; translation initiation inhibitor regulator-like; 2.50A {Streptococcus mutans} SCOP: d.79.1.0 Back     alignment and structure
Probab=100.00  E-value=2.5e-38  Score=240.11  Aligned_cols=123  Identities=52%  Similarity=0.801  Sum_probs=119.0

Q ss_pred             hhhcCCCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCc
Q 029609           65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADL  144 (190)
Q Consensus        65 ~~i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~  144 (190)
                      +.++++++|+|.|+|||++++|+++|+|||+|+|+.+|+++++|+++|++++|+||+++|+++|++++||+|+++|++|+
T Consensus         2 ~~i~~~~~p~p~g~ys~av~~g~~l~vSGq~~~d~~~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~   81 (125)
T 3l7q_A            2 KKIHTDKAPAAIGPYVQGKIVGNLLFASGQVPLSPETGQVIGTTIEEQTQQVLKNISAILTEAGTDFDHVVKTTCFLSDI   81 (125)
T ss_dssp             CEECCTTSCCCCSSCBSEEEETTEEEEEEECSBCTTTCSBCCSSHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEESCG
T ss_pred             ceEcCCCCCCCCCCCCCEEEECCEEEEeccCCcCCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCH
Confidence            46889999999999999999999999999999999789888999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHhCCCCCCeeEEEEcCCCCCCceEEEEEEEEe
Q 029609          145 KDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL  187 (190)
Q Consensus       145 ~d~~~~~~v~~~~f~~~~Part~v~V~~L~~~~lVEIe~iA~~  187 (190)
                      +||+.+|++|.+||++++|+||+++|..||+|++||||++|++
T Consensus        82 ~~~~~~n~v~~~~f~~~~Part~v~v~~L~~~~~VEIe~iA~v  124 (125)
T 3l7q_A           82 DDFVPFNEVYATAFKSDFPARSAVEVARLPKDVKIEIEVIAEL  124 (125)
T ss_dssp             GGHHHHHHHHHTTCCSSCCEEEEEECSBCGGGCSEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHcCCCCCcEEEEEcccCCCCCEEEEEEEEEe
Confidence            9999999999999999999999999999999999999999975
>3r0p_A L-PSP putative endoribonuclease; hydrolase; 1.90A {Uncultured organism} SCOP: d.79.1.0 Back     alignment and structure
>2dyy_A UPF0076 protein PH0854; putative translation initiation inhibitor, trimer, structural genomics, NPPSFA; 2.60A {Pyrococcus horikoshii} Back     alignment and structure
>3v4d_A Aminoacrylate peracid reductase RUTC; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 1.95A {Escherichia coli O6} Back     alignment and structure
>1qah_A Perchloric acid soluble protein; alpha-beta structure; 1.80A {Rattus norvegicus} SCOP: d.79.1.1 PDB: 1oni_A 1nq3_A Back     alignment and structure
>2b33_A Protein synthesis inhibitor, putative; putative endoribonuclease, STRU genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: d.79.1.1 Back     alignment and structure
>1x25_A Hypothetical UPF0076 protein ST0811; YJGF-like protein, archaea, structural genomics, UNK function; 2.00A {Sulfolobus tokodaii} SCOP: d.79.1.1 Back     alignment and structure
>3quw_A Protein MMF1; chorismate mutase fold, intact mitochondria maintenance, mitochondrial protein, protein binding; 1.75A {Saccharomyces cerevisiae} Back     alignment and structure
>3k0t_A Endoribonuclease L-PSP, putative; glucose binding, ER stressor, sugar binding protein; HET: BGC; 2.10A {Pseudomonas syringae PV} Back     alignment and structure
>2cvl_A TTHA0137, protein translation initiation inhibitor; structural genomics, NPPSFA; 1.65A {Thermus thermophilus} SCOP: d.79.1.1 PDB: 2csl_A 2cw4_A Back     alignment and structure
>1jd1_A Hypothetical 13.9 kDa protein in FCY2-PET117 intergenic region; translation inhibitor, structural genomics, PSI; 1.70A {Saccharomyces cerevisiae} SCOP: d.79.1.1 Back     alignment and structure
>1qd9_A Purine regulatory protein YABJ; perchloric acid soluble protein, purine regulation, YJGF/YER057C family, gene regulation; 1.70A {Bacillus subtilis} SCOP: d.79.1.1 Back     alignment and structure
>3m1x_A Putative endoribonuclease L-PSP; structural genomics, seattle structural genomics center for infectious disease, ssgcid, unknown function; HET: FLC; 1.20A {Entamoeba histolytica} PDB: 3m4s_A 3mqw_A* Back     alignment and structure
>1qu9_A YJGF protein; structural genomics; HET: CSP; 1.20A {Escherichia coli} SCOP: d.79.1.1 PDB: 1j7h_A 2uyk_A 2uyj_A 2uyn_A* 2uyp_A Back     alignment and structure
>2cwj_A Putative endonuclease; hydrolase, endoribonucrease, structural GE NPPSFA, national project on protein structural and function analyses; 3.60A {Aeropyrum pernix} SCOP: d.79.1.1 Back     alignment and structure
>1xrg_A Putative translation initiation inhibitor, YJGF family; conserved hypothetical protein, protein structure initiative, PSI; 2.20A {Clostridium thermocellum} SCOP: d.79.1.1 Back     alignment and structure
>3vcz_A Endoribonuclease L-PSP; virulence, pathogenesis, infectious diseases, center for STR genomics of infectious diseases, csgid, translation; HET: GOL; 1.80A {Vibrio vulnificus} Back     alignment and structure
>3lme_A Possible translation initiation inhibitor; structural genomics, RPA2473, PSI-2, protein structure initiative; 2.74A {Rhodopseudomonas palustris} SCOP: d.79.1.0 Back     alignment and structure
>3lyb_A Putative endoribonuclease; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.66A {Klebsiella pneumoniae} Back     alignment and structure
>1pf5_A Hypothetical protein YJGH; structural genomics, beta barrel, PSI, protein structure INI midwest center for structural genomics, MCSG; 2.50A {Escherichia coli} SCOP: d.79.1.1 Back     alignment and structure
>3i7t_A RV2704, putative uncharacterized protein; siras, YJGF/YER057C/UK114, homotrimer, quick SOAK NAI deriva unknown function; 1.93A {Mycobacterium tuberculosis} Back     alignment and structure
>2ig8_A Hypothetical protein PA3499; structural genomics, PSI-2, Pro structure initiative; 1.90A {Pseudomonas aeruginosa} Back     alignment and structure
>2otm_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.85A {Shewanella oneidensis} SCOP: d.79.1.1 Back     alignment and structure
>3i3f_A Hypothetical protein; structural genomics, niaid, decode, infectious seattle structural genomics center for infectious disease, unknown function; 1.35A {Giardia lamblia} Back     alignment and structure
>3d01_A Uncharacterized protein; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; HET: PG5; 1.70A {Agrobacterium tumefaciens str} Back     alignment and structure
>3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility, UN function; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A Back     alignment and structure
>2ewc_A Conserved hypothetical protein; YJGF proteins family, COG025 putative translation initiation inhibitor; 2.15A {Streptococcus pyogenes} SCOP: d.79.1.1 Back     alignment and structure
>3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown function, PSI-2, protein struct initiative; 1.49A {Pseudomonas aeruginosa} Back     alignment and structure
>3gtz_A Putative translation initiation inhibitor; structural genomics, unknown function, PSI-2, protein struct initiative; 2.50A {Salmonella typhimurium} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 190
d1qaha_132 d.79.1.1 (A:) 14.5 kda translational inhibitor pro 1e-37
d2cwja1116 d.79.1.1 (A:4-119) Putative endonuclease APE1501 { 2e-37
d1x25a1124 d.79.1.1 (A:1-124) Hypothetical protein ST0811 {Su 8e-37
d2b33a1126 d.79.1.1 (A:2-127) Putative protein synthesis inhi 1e-36
d1xrga_125 d.79.1.1 (A:) Purine regulatory protein YabJ {Clos 3e-36
d1qu9a_127 d.79.1.1 (A:) Conserved 'hypothetical' protein Yjg 2e-33
d1qd9a_124 d.79.1.1 (A:) Purine regulatory protein YabJ {Baci 8e-33
d2cvla1124 d.79.1.1 (A:1-124) Putative translation intiation 8e-31
d1jd1a_126 d.79.1.1 (A:) Highdosage growth inhibitor YER057cp 7e-30
d2otma1152 d.79.1.1 (A:2-153) Hypothetical protein SO1960 {Sh 4e-27
d2ewca1120 d.79.1.1 (A:3-122) Hypothetical protein SPy2060 {S 5e-26
d1pf5a_130 d.79.1.1 (A:) Hypothetical protein YjgH {Escherich 2e-22
>d1qaha_ d.79.1.1 (A:) 14.5 kda translational inhibitor protein, L-PSP {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: YjgF-like
family: YjgF/L-PSP
domain: 14.5 kda translational inhibitor protein, L-PSP
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  124 bits (313), Expect = 1e-37
 Identities = 66/123 (53%), Positives = 92/123 (74%)

Query: 64  KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEI 123
           ++ + T+KAPAA+G YSQA+  +  ++VSG +G+ P +G+ V   + ++ +Q LKN+GEI
Sbjct: 5   RKVISTSKAPAAIGAYSQAVLVDRTIYVSGQIGMDPSSGQLVPGGVAEEAKQALKNLGEI 64

Query: 124 LKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIEC 183
           LKA+G D+++VVKTT+LLAD+ DF TVNEIY  YF    PARA YQVAALP  +R+EIE 
Sbjct: 65  LKAAGCDFTNVVKTTVLLADINDFGTVNEIYKTYFQGNLPARAAYQVAALPKGSRIEIEA 124

Query: 184 IAA 186
           IA 
Sbjct: 125 IAV 127
>d2cwja1 d.79.1.1 (A:4-119) Putative endonuclease APE1501 {Aeropyrum pernix [TaxId: 56636]} Length = 116 Back     information, alignment and structure
>d1x25a1 d.79.1.1 (A:1-124) Hypothetical protein ST0811 {Sulfolobus tokodaii [TaxId: 111955]} Length = 124 Back     information, alignment and structure
>d2b33a1 d.79.1.1 (A:2-127) Putative protein synthesis inhibitor TM0215 {Thermotoga maritima [TaxId: 2336]} Length = 126 Back     information, alignment and structure
>d1xrga_ d.79.1.1 (A:) Purine regulatory protein YabJ {Clostridium thermocellum [TaxId: 1515]} Length = 125 Back     information, alignment and structure
>d1qu9a_ d.79.1.1 (A:) Conserved 'hypothetical' protein YjgF {Escherichia coli [TaxId: 562]} Length = 127 Back     information, alignment and structure
>d1qd9a_ d.79.1.1 (A:) Purine regulatory protein YabJ {Bacillus subtilis [TaxId: 1423]} Length = 124 Back     information, alignment and structure
>d2cvla1 d.79.1.1 (A:1-124) Putative translation intiation inhibitor TTHA0137 {Thermus thermophilus [TaxId: 274]} Length = 124 Back     information, alignment and structure
>d1jd1a_ d.79.1.1 (A:) Highdosage growth inhibitor YER057cp (YEO7_YEAST) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 126 Back     information, alignment and structure
>d2otma1 d.79.1.1 (A:2-153) Hypothetical protein SO1960 {Shewanella oneidensis [TaxId: 70863]} Length = 152 Back     information, alignment and structure
>d2ewca1 d.79.1.1 (A:3-122) Hypothetical protein SPy2060 {Streptococcus pyogenes [TaxId: 1314]} Length = 120 Back     information, alignment and structure
>d1pf5a_ d.79.1.1 (A:) Hypothetical protein YjgH {Escherichia coli [TaxId: 562]} Length = 130 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query190
d2b33a1126 Putative protein synthesis inhibitor TM0215 {Therm 100.0
d1xrga_125 Purine regulatory protein YabJ {Clostridium thermo 100.0
d1x25a1124 Hypothetical protein ST0811 {Sulfolobus tokodaii [ 100.0
d2cvla1124 Putative translation intiation inhibitor TTHA0137 100.0
d1qaha_132 14.5 kda translational inhibitor protein, L-PSP {R 100.0
d1qd9a_124 Purine regulatory protein YabJ {Bacillus subtilis 100.0
d1jd1a_126 Highdosage growth inhibitor YER057cp (YEO7_YEAST) 100.0
d1qu9a_127 Conserved 'hypothetical' protein YjgF {Escherichia 100.0
d2cwja1116 Putative endonuclease APE1501 {Aeropyrum pernix [T 100.0
d2ewca1120 Hypothetical protein SPy2060 {Streptococcus pyogen 99.97
d1pf5a_130 Hypothetical protein YjgH {Escherichia coli [TaxId 99.97
d2otma1152 Hypothetical protein SO1960 {Shewanella oneidensis 99.95
>d2b33a1 d.79.1.1 (A:2-127) Putative protein synthesis inhibitor TM0215 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: YjgF-like
family: YjgF/L-PSP
domain: Putative protein synthesis inhibitor TM0215
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=5.9e-37  Score=230.50  Aligned_cols=125  Identities=46%  Similarity=0.738  Sum_probs=120.4

Q ss_pred             hhhhcCCCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecC
Q 029609           64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLAD  143 (190)
Q Consensus        64 ~~~i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d  143 (190)
                      |+.|+++++|++.|+|||++++|++||+|||++.+++++..+++++++|++++|+||+++|+++|++++||+|+++|++|
T Consensus         1 ~~~i~~~~aP~p~g~ys~av~~g~~i~~SGq~~~~~~~~~~~~~~~~~Q~~~~~~nl~~~L~~aG~~~~~vvk~~vy~~~   80 (126)
T d2b33a1           1 KRFVETDKAPKAIGPYSQAVVVGNMMFVSGQIPIDPETGELVQGTIEEKTERVLENLKAILEAGGFSLKDVVKVTVFTTS   80 (126)
T ss_dssp             CEEECCTTSCCCCSSCCSEEEETTEEEEEEECSBCTTTCCBCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESC
T ss_pred             CceEcCCCCCCCCCCccceEEECCEEEEEeecCccCcccccccchhhHHHHHHHHHHHHHHHHcCCcccCcEEEEEEeCC
Confidence            35689999999999999999999999999999999887777889999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHhCCCCCCeeEEEEcCCCCCCceEEEEEEEEec
Q 029609          144 LKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALP  188 (190)
Q Consensus       144 ~~d~~~~~~v~~~~f~~~~Part~v~V~~L~~~~lVEIe~iA~~p  188 (190)
                      ++||+.++++|++||++++|+||+++|..||++++||||++|+++
T Consensus        81 ~~d~~~~~~v~~~~~~~~~Part~v~v~~L~~~~~VEIe~iA~~~  125 (126)
T d2b33a1          81 MDYFQRVNEVYSRYFGDHRPARSFVAVAQLPRNVEIEIEAIAVKE  125 (126)
T ss_dssp             GGGHHHHHHHHHHHHTTTCCEEEEEECSCCGGGCSEEEEEEEECC
T ss_pred             HHHHHHHHHHHHHhhcccccceEEEEeCcCCCCCEEEEEEEEEec
Confidence            999999999999999999999999999999999999999999986
>d1xrga_ d.79.1.1 (A:) Purine regulatory protein YabJ {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1x25a1 d.79.1.1 (A:1-124) Hypothetical protein ST0811 {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d2cvla1 d.79.1.1 (A:1-124) Putative translation intiation inhibitor TTHA0137 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1qaha_ d.79.1.1 (A:) 14.5 kda translational inhibitor protein, L-PSP {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1qd9a_ d.79.1.1 (A:) Purine regulatory protein YabJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1jd1a_ d.79.1.1 (A:) Highdosage growth inhibitor YER057cp (YEO7_YEAST) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qu9a_ d.79.1.1 (A:) Conserved 'hypothetical' protein YjgF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cwja1 d.79.1.1 (A:4-119) Putative endonuclease APE1501 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2ewca1 d.79.1.1 (A:3-122) Hypothetical protein SPy2060 {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1pf5a_ d.79.1.1 (A:) Hypothetical protein YjgH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2otma1 d.79.1.1 (A:2-153) Hypothetical protein SO1960 {Shewanella oneidensis [TaxId: 70863]} Back     information, alignment and structure