Citrus Sinensis ID: 029622

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Protein Sequence
MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPIPSENLTPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVSDLSI
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccHHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccEEEEEccEEEccccc
Secondary Structure Prediction (SSPRO)
cccHEEEEEEHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccEEEEEccEEEEEEEc
Coil and Loop (DISEMBL)
MDRLNILLLGLPLFLLCSDllnlftpppppppksashhhhkppipsenltpdfpsqkivggigygstVNINFcascsyrgtAITMKRMLEtqfpgidvvlanyppplpkrllakvvpavQIGVIGIVVAGeqifpmlgmtpppwyyslranrfgsiASTWLIGNFLQSFLqssgafevycnddlvsdlsi
Flexible Loop (DISEMBL)
MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPIPSENLTPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVSDLSI
Low Complexity Region (SEG)
MDRlnilllglplfllcsdllnlFTpppppppksashhhhkppipsENLTPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKvvpavqigvigivvagEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVSDLSI
Disordered region (IsUnstruct)
********************************************************KIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLA**********LAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLV*****
Disordered Region (DISOPRED)
*DRLNILLLGLPLFLLCSDLLNL****************************************YGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVSDL**
Disordered Region (DISEMBL)
MDRLNILLLGLPLFLLCSDLLNLFTPPPP*************PIPSENLTPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVSDLSI
Disordered Region (DISPRO)
*DRLNILLLGLPLFLLCSDLLNLFTPP*********************************GIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVSDLSI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPIPSENLTPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVSDLSI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	190	2.2.26 [Sep-21-2011]
Q9STZ2	209	SelT-like protein OS=Arab	yes	no	0.926	0.842	0.682	2e-69
Q9BN19	244	Putative esophageal gland	N/A	no	0.621	0.483	0.347	3e-17
Q19892	216	Putative selT-like protei	yes	no	0.936	0.824	0.270	5e-14
Q9VMV6	198	SelT-like protein OS=Dros	yes	no	0.610	0.585	0.344	8e-13
Q9U3N5	247	Putative selT-like protei	no	no	0.957	0.736	0.222	8e-11
Q502K9	210	Selenoprotein T2 OS=Danio	yes	no	0.721	0.652	0.275	1e-09
Q6PBD1	201	Selenoprotein T OS=Xenopu	yes	no	0.684	0.646	0.253	1e-08
Q5ZJN8	199	Selenoprotein T OS=Gallus	yes	no	0.678	0.648	0.240	2e-08
Q1H5H1	195	Selenoprotein T OS=Rattus	yes	no	0.678	0.661	0.240	2e-08
P62342	195	Selenoprotein T OS=Mus mu	yes	no	0.678	0.661	0.240	2e-08

>sp|Q9STZ2|SELT_ARATH SelT-like protein OS=Arabidopsis thaliana GN=At3g47300 PE=2 SV=2

 Score =  261 bits (668), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 127/186 (68%), Positives = 151/186 (81%), Gaps = 10/186 (5%)

Query: 1   MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPIPSENLTPDFPSQKIVG 60
           MD+  ++LLGLP+FLLCSDL NLFTPPPP         H  PP  SE L  DFP+QK  G
Sbjct: 1   MDKTQLILLGLPIFLLCSDLFNLFTPPPP------KSQHQSPPSISETL--DFPAQKSTG 52

Query: 61  GIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQ 120
            +GYG+TV INFC SCSY+GTA++MK+MLE+ FPG+DVVLANYP P PKR+LAKVVP  Q
Sbjct: 53  -VGYGNTVEINFCISCSYKGTAVSMKKMLESVFPGLDVVLANYPAPAPKRILAKVVPVAQ 111

Query: 121 IGVIGIVVAGEQIFPMLGMT-PPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVY 179
           +GVIG+++ GEQIFPM+G+  PP WY+SLRANRFGS+ASTWL+GNFLQSFLQSSGAFEV 
Sbjct: 112 VGVIGLIMGGEQIFPMIGIAQPPAWYHSLRANRFGSMASTWLLGNFLQSFLQSSGAFEVS 171

Query: 180 CNDDLV 185
           CN +LV
Sbjct: 172 CNGELV 177

Arabidopsis thaliana (taxid: 3702)

>sp|Q9BN19|HSP6_HETGL Putative esophageal gland cell secretory protein 6 OS=Heterodera glycines GN=HSP6 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 68/118 (57%)

Query: 68  VNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIV 127
           V  +FC SC YR       ++L  ++PGID+   NYPP + + + A+V+  V+I +I  V
Sbjct: 83  VKFSFCVSCGYRQAYEQFAQILREKYPGIDIHGENYPPGILRTVGAQVIGMVKIALIVCV 142

Query: 128 VAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLV 185
           V+G   FP LG+  P ++  + +NR  +    +L  N ++  LQS+GAFE+Y   + +
Sbjct: 143 VSGRSPFPTLGLETPTFFQWMLSNRLSAALMLFLFSNAIEGMLQSTGAFEIYIESERI 200

Heterodera glycines (taxid: 51029)

>sp|Q19892|SELT2_CAEEL Putative selT-like protein F28H7.4 OS=Caenorhabditis elegans GN=F28H7.4 PE=3 SV=2

 Score = 77.4 bits (189), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 18/196 (9%)

Query: 1   MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPIPSENLTPDFP------ 54
           M R   +++GL  F + S + ++F     PP + +    +   + SE  T   P      
Sbjct: 1   MSRSGAIIIGL--FFIAS-IFDVFRAEKEPPAEDSRLEDY---LSSELETTAIPTVVNEN 54

Query: 55  --SQKIVGGIGYGS---TVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPK 109
             SQ +V   G+      + I +C SC Y+          + ++PG+ +   N+ P   K
Sbjct: 55  SHSQDVVDS-GFSKDLPKLTILYCVSCGYKQAFNQFYEFAKEKYPGLVIEGGNFSPDFWK 113

Query: 110 RLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSF 169
             LA++V   +IG+I IV+ G   F  +G   P    +   NRF      ++IGN  +S 
Sbjct: 114 GCLAQIVGVAKIGLIAIVITGSNPFEYIGFGYPQILQTAHYNRFSYSLLVFMIGNLFEST 173

Query: 170 LQSSGAFEVYCNDDLV 185
           L S+GAFE++  D  +
Sbjct: 174 LSSTGAFEIFLGDKQI 189

Caenorhabditis elegans (taxid: 6239)

>sp|Q9VMV6|SELT_DROME SelT-like protein OS=Drosophila melanogaster GN=CG3887 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 63/116 (54%)

Query: 67  TVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGI 126
           T+   +C SC YR        +L  ++P I V   NY PP     L+K++ A++I +I  
Sbjct: 43  TMTFLYCYSCGYRKAFEDYVGLLGEKYPQIQVNGGNYDPPGLNYYLSKMIFALKIIIIVS 102

Query: 127 VVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCND 182
           VV+    F  LG+  P W+  ++AN+  +    + +GN L++ L SSGAFE+  ND
Sbjct: 103 VVSAVSPFTFLGLNTPSWWSHMQANKIYACMMIFFLGNMLEAQLISSGAFEITLND 158

Drosophila melanogaster (taxid: 7227)

>sp|Q9U3N5|SELT1_CAEEL Putative selT-like protein C35C5.3 OS=Caenorhabditis elegans GN=C35C5.3 PE=3 SV=2

 Score = 67.0 bits (162), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 83/207 (40%), Gaps = 25/207 (12%)

Query: 1   MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPIPSENLTPDFPSQKIVG 60
           M R  + ++G+  F+   D+L   T          +H H K    +E    +  SQ    
Sbjct: 1   MSRFGVFIIGVLFFMSVCDVLR--TVSAEEHSHDENHVHEKDDFEAE-FGDETDSQSFSQ 57

Query: 61  GIGYGS----------------------TVNINFCASCSYRGTAITMKRMLETQFPGIDV 98
           G                           T+ I +C SC Y+          + ++P + +
Sbjct: 58  GTEEDHIEVREQSSFVKPTAVHHAKDLPTLRIFYCVSCGYKQAFDQFTTFAKEKYPNMPI 117

Query: 99  VLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIAS 158
             AN+ P L K  +A+ +  V++ V+ +V+ G   F   G+  P        N+  S   
Sbjct: 118 EGANFAPVLWKAYVAQALSFVKMAVLVLVLGGINPFERFGLGYPQILQHAHGNKMSSCML 177

Query: 159 TWLIGNFLQSFLQSSGAFEVYCNDDLV 185
            +++GN ++  L S+GAFEVY  ++ +
Sbjct: 178 VFMLGNLVEQSLISTGAFEVYLGNEQI 204

Caenorhabditis elegans (taxid: 6239)

>sp|Q502K9|SELT2_DANRE Selenoprotein T2 OS=Danio rerio GN=selt2 PE=2 SV=3

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 1/138 (0%)

Query: 46  SENLTPDFPSQKIVGGIGY-GSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYP 104
            EN  PD  +Q+      Y G  +   +C S  Y        R +   +P I +   NYP
Sbjct: 34  QENTGPDINTQRQNKHTFYTGPVLKFQYCISUGYSKVFQEYSRSISQLYPDIRIEGDNYP 93

Query: 105 PPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGN 164
           P    + L   +   ++  I ++V G+  F M GM  P  +   + N+  S    + I N
Sbjct: 94  PKPINKYLGNFLSYFKLLAIALIVTGQNPFQMFGMNTPRIWAWGQENKIFSCLMAFFISN 153

Query: 165 FLQSFLQSSGAFEVYCND 182
            L++   S+GAFE+  ND
Sbjct: 154 MLETHFLSTGAFEITLND 171

Danio rerio (taxid: 7955)

>sp|Q6PBD1|SELT_XENTR Selenoprotein T OS=Xenopus tropicalis GN=selt PE=2 SV=3

 Score = 59.7 bits (143), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 61/130 (46%)

Query: 53  FPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLL 112
            PS+K+      G  +    C S  YR       R++  ++P I +   NY P    R +
Sbjct: 31  LPSKKLKMQYTAGPLLKFQICVSUGYRRVFEDYMRVISQRYPDIRIEGENYLPHPIYRNI 90

Query: 113 AKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQS 172
           A  +   ++ +IG+++AG+  F   GM  P  +   + N+  +    + + N +++   S
Sbjct: 91  ASFLSVFKLVLIGLIIAGKDPFAFFGMQAPSVWQWGQENKVYACMMVFFVSNMIENQCMS 150

Query: 173 SGAFEVYCND 182
           +GAFE+  ND
Sbjct: 151 TGAFEITLND 160

Xenopus tropicalis (taxid: 8364)

>sp|Q5ZJN8|SELT_CHICK Selenoprotein T OS=Gallus gallus GN=SELT PE=2 SV=3

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 60/129 (46%)

Query: 54  PSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLA 113
           P++K+      G  +    C S  YR       R++  ++P I +   NY P    R +A
Sbjct: 31  PAKKLRMAYATGPLLKFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIA 90

Query: 114 KVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSS 173
             +   ++ +IG+++ G+  F   GM  P  +   + N+  +    + + N +++   S+
Sbjct: 91  SFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMST 150

Query: 174 GAFEVYCND 182
           GAFE+  ND
Sbjct: 151 GAFEITLND 159

Gallus gallus (taxid: 9031)

>sp|Q1H5H1|SELT_RAT Selenoprotein T OS=Rattus norvegicus GN=Selt PE=2 SV=2

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 60/129 (46%)

Query: 54  PSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLA 113
           PS+++      G  +    C S  YR       R++  ++P I +   NY P    R +A
Sbjct: 27  PSKRLKMQYATGPLLKFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIA 86

Query: 114 KVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSS 173
             +   ++ +IG+++ G+  F   GM  P  +   + N+  +    + + N +++   S+
Sbjct: 87  SFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMST 146

Query: 174 GAFEVYCND 182
           GAFE+  ND
Sbjct: 147 GAFEITLND 155

Rattus norvegicus (taxid: 10116)

>sp|P62342|SELT_MOUSE Selenoprotein T OS=Mus musculus GN=Selt PE=2 SV=2

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 60/129 (46%)

Query: 54  PSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLA 113
           PS+++      G  +    C S  YR       R++  ++P I +   NY P    R +A
Sbjct: 27  PSKRLKMQYATGPLLKFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIA 86

Query: 114 KVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSS 173
             +   ++ +IG+++ G+  F   GM  P  +   + N+  +    + + N +++   S+
Sbjct: 87  SFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMST 146

Query: 174 GAFEVYCND 182
           GAFE+  ND
Sbjct: 147 GAFEITLND 155

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
307135926	227	selenoprotein t precursor [Cucumis melo	0.957	0.801	0.683	7e-70
5541697	208	putative protein [Arabidopsis thaliana]	0.942	0.860	0.677	3e-68
51970218	209	putative protein [Arabidopsis thaliana]	0.926	0.842	0.682	7e-68
30692842	209	SelT-like protein [Arabidopsis thaliana]	0.926	0.842	0.682	8e-68
224139124	223	predicted protein [Populus trichocarpa]	0.973	0.829	0.675	1e-67
118487159	223	unknown [Populus trichocarpa]	0.973	0.829	0.675	1e-67
449439880	227	PREDICTED: selT-like protein-like [Cucum	0.963	0.806	0.677	8e-65
388522965	230	unknown [Lotus japonicus]	0.968	0.8	0.650	8e-65
351727377	228	uncharacterized protein LOC100527643 pre	0.952	0.793	0.664	2e-64
297793399	227	hypothetical protein ARALYDRAFT_495986 [	0.957	0.801	0.663	6e-62

>gi|307135926|gb|ADN33788.1| selenoprotein t precursor [Cucumis melo subsp. melo] gi|307136469|gb|ADN34273.1| selenoprotein t [Cucumis melo subsp. melo]

 Score =  268 bits (685), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 132/193 (68%), Positives = 157/193 (81%), Gaps = 11/193 (5%)

Query: 1   MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHH-----HHKPPIPSENLTP-DFP 54
           MDR  I+LLGLP+FLL +D++NLFTPPPP P   A++H     H++P   S    P +FP
Sbjct: 1   MDRTRIVLLGLPIFLLFTDIVNLFTPPPPKP---AANHPPPRVHYQPKSQSVIQEPLEFP 57

Query: 55  SQK--IVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLL 112
           ++K  ++GGIG GS +NINFC SCSYRGTAI MK MLE+ FPG++V+LANYPPP PKRLL
Sbjct: 58  TEKRSVIGGIGQGSVININFCVSCSYRGTAINMKNMLESSFPGVEVILANYPPPFPKRLL 117

Query: 113 AKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQS 172
           +KVVP VQ G+IGI+VAGE IFP LGM PPPWYYSLRANRFGSIASTWL GNF+QSFLQS
Sbjct: 118 SKVVPVVQFGIIGIIVAGEHIFPRLGMVPPPWYYSLRANRFGSIASTWLFGNFVQSFLQS 177

Query: 173 SGAFEVYCNDDLV 185
           SGAFEVYCN ++V
Sbjct: 178 SGAFEVYCNGEMV 190

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5541697|emb|CAB51202.1| putative protein [Arabidopsis thaliana]

 Score =  263 bits (671), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 128/189 (67%), Positives = 152/189 (80%), Gaps = 10/189 (5%)

Query: 1   MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPIPSENLTPDFPSQKIVG 60
           MD+  ++LLGLP+FLLCSDL NLFTPPPP         H  PP  SE L  DFP+QK  G
Sbjct: 1   MDKTQLILLGLPIFLLCSDLFNLFTPPPP------KSQHQSPPSISETL--DFPAQKSTG 52

Query: 61  GIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQ 120
            +GYG+TV INFC SCSY+GTA++MK+MLE+ FPG+DVVLANYP P PKR+LAKVVP  Q
Sbjct: 53  -VGYGNTVEINFCISCSYKGTAVSMKKMLESVFPGLDVVLANYPAPAPKRILAKVVPVAQ 111

Query: 121 IGVIGIVVAGEQIFPMLGMT-PPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVY 179
           +GVIG+++ GEQIFPM+G+  PP WY+SLRANRFGS+ASTWL+GNFLQSFLQSSGAFEV 
Sbjct: 112 VGVIGLIMGGEQIFPMIGIAQPPAWYHSLRANRFGSMASTWLLGNFLQSFLQSSGAFEVS 171

Query: 180 CNDDLVSDL 188
           CN +LVS  
Sbjct: 172 CNGELVSSF 180

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51970218|dbj|BAD43801.1| putative protein [Arabidopsis thaliana]

 Score =  261 bits (668), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 127/186 (68%), Positives = 151/186 (81%), Gaps = 10/186 (5%)

Query: 1   MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPIPSENLTPDFPSQKIVG 60
           MD+  ++LLGLP+FLLCSDL NLFTPPPP         H  PP  SE L  DFP+QK  G
Sbjct: 1   MDKTQLILLGLPIFLLCSDLFNLFTPPPP------KSQHQSPPSISETL--DFPAQKSTG 52

Query: 61  GIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQ 120
            +GYG+TV INFC SCSY+GTA++MK+MLE+ FPG+DVVLANYP P PKR+LAKVVP  Q
Sbjct: 53  -VGYGNTVEINFCISCSYKGTAVSMKKMLESVFPGLDVVLANYPAPAPKRILAKVVPVAQ 111

Query: 121 IGVIGIVVAGEQIFPMLGMT-PPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVY 179
           +GVIG+++ GEQIFPM+G+  PP WY+SLRANRFGS+ASTWL+GNFLQSFLQSSGAFEV 
Sbjct: 112 VGVIGLIMGGEQIFPMIGIAQPPAWYHSLRANRFGSMASTWLLGNFLQSFLQSSGAFEVS 171

Query: 180 CNDDLV 185
           CN +LV
Sbjct: 172 CNGELV 177

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30692842|ref|NP_190314.2| SelT-like protein [Arabidopsis thaliana] gi|84028261|sp|Q9STZ2.2|SELT_ARATH RecName: Full=SelT-like protein; Flags: Precursor gi|34365637|gb|AAQ65130.1| At3g47300 [Arabidopsis thaliana] gi|51969052|dbj|BAD43218.1| putative protein [Arabidopsis thaliana] gi|51970866|dbj|BAD44125.1| putative protein [Arabidopsis thaliana] gi|332644742|gb|AEE78263.1| SelT-like protein [Arabidopsis thaliana]

 Score =  261 bits (668), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 127/186 (68%), Positives = 151/186 (81%), Gaps = 10/186 (5%)

Query: 1   MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPIPSENLTPDFPSQKIVG 60
           MD+  ++LLGLP+FLLCSDL NLFTPPPP         H  PP  SE L  DFP+QK  G
Sbjct: 1   MDKTQLILLGLPIFLLCSDLFNLFTPPPP------KSQHQSPPSISETL--DFPAQKSTG 52

Query: 61  GIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQ 120
            +GYG+TV INFC SCSY+GTA++MK+MLE+ FPG+DVVLANYP P PKR+LAKVVP  Q
Sbjct: 53  -VGYGNTVEINFCISCSYKGTAVSMKKMLESVFPGLDVVLANYPAPAPKRILAKVVPVAQ 111

Query: 121 IGVIGIVVAGEQIFPMLGMT-PPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVY 179
           +GVIG+++ GEQIFPM+G+  PP WY+SLRANRFGS+ASTWL+GNFLQSFLQSSGAFEV 
Sbjct: 112 VGVIGLIMGGEQIFPMIGIAQPPAWYHSLRANRFGSMASTWLLGNFLQSFLQSSGAFEVS 171

Query: 180 CNDDLV 185
           CN +LV
Sbjct: 172 CNGELV 177

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139124|ref|XP_002322986.1| predicted protein [Populus trichocarpa] gi|222867616|gb|EEF04747.1| predicted protein [Populus trichocarpa]

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 133/197 (67%), Positives = 153/197 (77%), Gaps = 12/197 (6%)

Query: 1   MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHH-----HKPPIPSENLTPDFPS 55
           MDR  ILLLGLP+FL CSD+LNLFT  PPP P    HH+      KP    +     FP+
Sbjct: 1   MDRSQILLLGLPIFLFCSDILNLFTTSPPPKPNPNDHHNIHQFQTKPQQVLQQQPLQFPT 60

Query: 56  QK---IVGG---IGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPK 109
           QK   IVGG   IG+G+ +NINFC SCSYRGTA+TMK MLE++FPGI V+LAN+P PLPK
Sbjct: 61  QKSSTIVGGLGNIGFGNVININFCVSCSYRGTAVTMKNMLESEFPGIQVILANHPAPLPK 120

Query: 110 RLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPP-WYYSLRANRFGSIASTWLIGNFLQS 168
           RLL+KVVPAVQ G+IGI++AGEQIFP LG   PP WYYSLRANRFGSIASTWL GNF+QS
Sbjct: 121 RLLSKVVPAVQFGIIGIILAGEQIFPRLGFAAPPSWYYSLRANRFGSIASTWLFGNFIQS 180

Query: 169 FLQSSGAFEVYCNDDLV 185
           FLQSSGAFEV+CN +LV
Sbjct: 181 FLQSSGAFEVFCNGELV 197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487159|gb|ABK95408.1| unknown [Populus trichocarpa]

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 133/197 (67%), Positives = 153/197 (77%), Gaps = 12/197 (6%)

Query: 1   MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHH-----HKPPIPSENLTPDFPS 55
           MDR  ILLLGLP+FL CSD+LNLFT  PPP P    HH+      KP    +     FP+
Sbjct: 1   MDRSQILLLGLPIFLFCSDILNLFTTSPPPKPNPNDHHNIHQFQTKPQQVLQQQPLQFPT 60

Query: 56  QK---IVGG---IGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPK 109
           QK   IVGG   IG+G+ +NINFC SCSYRGTA+TMK MLE++FPGI V+LAN+P  LPK
Sbjct: 61  QKSSTIVGGLGNIGFGNVININFCVSCSYRGTAVTMKNMLESEFPGIQVILANHPASLPK 120

Query: 110 RLLAKVVPAVQIGVIGIVVAGEQIFPMLGM-TPPPWYYSLRANRFGSIASTWLIGNFLQS 168
           RLL+KVVPAVQ G+IGI++AGEQIFP LG   PPPWYYSLRANRFGSIASTWL GNF+QS
Sbjct: 121 RLLSKVVPAVQFGIIGIILAGEQIFPRLGFAAPPPWYYSLRANRFGSIASTWLFGNFIQS 180

Query: 169 FLQSSGAFEVYCNDDLV 185
           FLQSSGAFEV+CN +LV
Sbjct: 181 FLQSSGAFEVFCNGELV 197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439880|ref|XP_004137713.1| PREDICTED: selT-like protein-like [Cucumis sativus]

 Score =  251 bits (642), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 156/192 (81%), Gaps = 9/192 (4%)

Query: 1   MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASH-----HHHKPPIPSENLTPDFPS 55
           MDR  ++LLGLP+ LL +D++NLFTPPPP P  +A+H     H+     P     P+FP+
Sbjct: 1   MDRTQMVLLGLPILLLFTDIVNLFTPPPPKP--AANHPPPRVHYQPKSQPVIQEPPEFPT 58

Query: 56  QK--IVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLA 113
           +K  ++GGIG GS +NINFC SCSYR TAITMK MLE+ FPG++V+LANYPPPLPKRLL+
Sbjct: 59  EKRSVIGGIGQGSVININFCVSCSYRSTAITMKNMLESSFPGVEVILANYPPPLPKRLLS 118

Query: 114 KVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSS 173
           KVVPAVQ G+IGI++AGE IFP LGM PPPWYYSLRANRFGSIASTWL GNF+QSFLQSS
Sbjct: 119 KVVPAVQFGIIGIIMAGEHIFPRLGMVPPPWYYSLRANRFGSIASTWLFGNFIQSFLQSS 178

Query: 174 GAFEVYCNDDLV 185
           GAFEVYCN ++V
Sbjct: 179 GAFEVYCNGEMV 190

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522965|gb|AFK49544.1| unknown [Lotus japonicus]

 Score =  251 bits (642), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 123/189 (65%), Positives = 148/189 (78%), Gaps = 5/189 (2%)

Query: 1   MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPIPSENLTP--DFPSQKI 58
           MDR  ILL+GLP+FL  SD+ NLF P PPP P +  H HH  P P  +L    DFP+QK 
Sbjct: 1   MDRTQILLVGLPIFLFFSDVFNLFAPAPPPKP-THHHRHHPIPQPQPHLQKPLDFPAQKQ 59

Query: 59  --VGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVV 116
             +G IG G+TVNI+FC SCSY+G A+T+K MLE+ FPGI+VVLANYPPPLPKR+L+K++
Sbjct: 60  SGIGPIGVGNTVNIDFCTSCSYKGNAVTVKNMLESVFPGINVVLANYPPPLPKRVLSKII 119

Query: 117 PAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAF 176
           P VQ G++  +VAG+QIFP LG  PPPWYYSLRAN+F SIASTWL  NF+QSFLQSSGAF
Sbjct: 120 PVVQTGIVVSIVAGDQIFPRLGFVPPPWYYSLRANKFRSIASTWLFANFIQSFLQSSGAF 179

Query: 177 EVYCNDDLV 185
           EVYCN +LV
Sbjct: 180 EVYCNGELV 188

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727377|ref|NP_001235367.1| uncharacterized protein LOC100527643 precursor [Glycine max] gi|255632840|gb|ACU16773.1| unknown [Glycine max]

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 129/194 (66%), Positives = 152/194 (78%), Gaps = 13/194 (6%)

Query: 1   MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPI-----PSENLTP--DF 53
           MDR  ILL+GLP+FL  SD+LNLF+P P P P     HHH PPI     P  +L    +F
Sbjct: 1   MDRTQILLVGLPIFLFFSDILNLFSPQPSPKPT----HHHLPPIHPKPHPQPHLQQPLEF 56

Query: 54  PSQKI--VGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRL 111
           P+QK   +G IG G+TV+I+FC SCSY+G A+T+K MLE +FPGI+VVLANYPPPLPKR+
Sbjct: 57  PTQKQSGIGLIGIGNTVSIDFCTSCSYKGNAVTVKNMLEFEFPGINVVLANYPPPLPKRI 116

Query: 112 LAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQ 171
           L KVVP VQ G+I  +VAG+QIFP LG+TPPPWYYSLRAN+F SIASTWL+ NFLQSFLQ
Sbjct: 117 LGKVVPVVQTGIIVAIVAGDQIFPRLGITPPPWYYSLRANKFRSIASTWLLTNFLQSFLQ 176

Query: 172 SSGAFEVYCNDDLV 185
           SSGAFEVYCN DLV
Sbjct: 177 SSGAFEVYCNGDLV 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793399|ref|XP_002864584.1| hypothetical protein ARALYDRAFT_495986 [Arabidopsis lyrata subsp. lyrata] gi|297310419|gb|EFH40843.1| hypothetical protein ARALYDRAFT_495986 [Arabidopsis lyrata subsp. lyrata]

 Score =  242 bits (617), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 130/196 (66%), Positives = 154/196 (78%), Gaps = 14/196 (7%)

Query: 1   MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHH------KPP--IPSENLTPD 52
           MDR  ++LLGLP+FL CSDL NLFTPPPP P     H         +P   IP    T D
Sbjct: 1   MDRAQLILLGLPIFLFCSDLFNLFTPPPPKPQPHRPHQPPHIPHQHRPAAIIPE---TLD 57

Query: 53  FPSQKI--VGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKR 110
           FPSQK   +G IGYG+TV INFC SCSY+GTA+TMK+MLET FPG+DV+LANYPPP PKR
Sbjct: 58  FPSQKTNGLGAIGYGNTVEINFCVSCSYKGTAVTMKKMLETAFPGLDVILANYPPPAPKR 117

Query: 111 LLAKVVPAVQIGVIGIVVAGEQIFPMLGMT-PPPWYYSLRANRFGSIASTWLIGNFLQSF 169
           LLAK VP  Q+GVIG++VAG++I PM+G+T PP W++SLRANRFGS+ASTWLIGNFLQS+
Sbjct: 118 LLAKFVPVAQMGVIGMIVAGDRILPMIGITHPPAWFHSLRANRFGSMASTWLIGNFLQSY 177

Query: 170 LQSSGAFEVYCNDDLV 185
           LQSSGAFEV+CN +LV
Sbjct: 178 LQSSGAFEVHCNGELV 193

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
TAIR|locus:2178873	228	AT5G58640 [Arabidopsis thalian	0.715	0.596	0.664	6.2e-46
TAIR|locus:2099540	209	SELT "SELT-like protein precur	0.710	0.645	0.664	1.6e-45
FB|FBgn0031670	198	CG3887 [Drosophila melanogaste	0.642	0.616	0.295	9.4e-11
ZFIN|ZDB-GENE-030411-4	210	selt2 "selenoprotein T, 2" [Da	0.710	0.642	0.268	2.2e-08
WB|WBGene00009238	216	F28H7.4 [Caenorhabditis elegan	0.605	0.532	0.252	1e-07
WB|WBGene00007955	247	C35C5.3 [Caenorhabditis elegan	0.626	0.481	0.235	6e-07
UNIPROTKB|E2QXW4	197	SELT "Uncharacterized protein"	0.673	0.649	0.234	1.2e-05
UNIPROTKB|Q5ZJN8	199	SELT "Selenoprotein T" [Gallus	0.673	0.643	0.223	1.6e-05
UNIPROTKB|P62341	195	SELT "Selenoprotein T" [Homo s	0.673	0.656	0.223	1.9e-05
UNIPROTKB|I3LV73	195	SELT "Uncharacterized protein"	0.673	0.656	0.223	1.9e-05

TAIR|locus:2178873 AT5G58640 [Arabidopsis thaliana (taxid:3702)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 93/140 (66%), Positives = 110/140 (78%)

Query:    50 TPDFPSQKI--VGG-IGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPP 106
             T DFPSQK   +GG IGYG+TV INFC SCSY+GTA+TMK+MLET FPG+DV+LANYPPP
Sbjct:    55 TLDFPSQKTSGLGGAIGYGNTVEINFCVSCSYKGTAVTMKKMLETAFPGLDVILANYPPP 114

Query:   107 LPKRLLAKXXXXXXXXXXXXXXXXEQIFPMLGMT-PPPWYYSLRANRFGSIASTWLIGNF 165
              PKRLLAK                ++I PM+G+T PP W++SLRANRFGS+ASTWLIGNF
Sbjct:   115 APKRLLAKVVPVVQMGVIGMIVAGDRILPMIGITNPPAWFHSLRANRFGSMASTWLIGNF 174

Query:   166 LQSFLQSSGAFEVYCNDDLV 185
             LQS+LQSSGAFEV+CN + V
Sbjct:   175 LQSYLQSSGAFEVHCNGEPV 194

GO:0008430 "selenium binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2099540 SELT "SELT-like protein precursor" [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 91/137 (66%), Positives = 107/137 (78%)

Query:    50 TPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPK 109
             T DFP+QK  G +GYG+TV INFC SCSY+GTA++MK+MLE+ FPG+DVVLANYP P PK
Sbjct:    42 TLDFPAQKSTG-VGYGNTVEINFCISCSYKGTAVSMKKMLESVFPGLDVVLANYPAPAPK 100

Query:   110 RLLAKXXXXXXXXXXXXXXXXEQIFPMLGMTPPP-WYYSLRANRFGSIASTWLIGNFLQS 168
             R+LAK                EQIFPM+G+  PP WY+SLRANRFGS+ASTWL+GNFLQS
Sbjct:   101 RILAKVVPVAQVGVIGLIMGGEQIFPMIGIAQPPAWYHSLRANRFGSMASTWLLGNFLQS 160

Query:   169 FLQSSGAFEVYCNDDLV 185
             FLQSSGAFEV CN +LV
Sbjct:   161 FLQSSGAFEVSCNGELV 177

GO:0008430 "selenium binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

FB|FBgn0031670 CG3887 [Drosophila melanogaster (taxid:7227)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 36/122 (29%), Positives = 53/122 (43%)

Query:    61 GIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKXXXXXX 120
             G     T+   +C SC YR        +L  ++P I V   NY PP     L+K      
Sbjct:    37 GQNIAPTMTFLYCYSCGYRKAFEDYVGLLGEKYPQIQVNGGNYDPPGLNYYLSKMIFALK 96

Query:   121 XXXXXXXXXXEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYC 180
                          F  LG+  P W+  ++AN+  +    + +GN L++ L SSGAFE+  
Sbjct:    97 IIIIVSVVSAVSPFTFLGLNTPSWWSHMQANKIYACMMIFFLGNMLEAQLISSGAFEITL 156

Query:   181 ND 182
             ND
Sbjct:   157 ND 158

GO:0005575 "cellular_component" evidence=ND

GO:0008430 "selenium binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

ZFIN|ZDB-GENE-030411-4 selt2 "selenoprotein T, 2" [Danio rerio (taxid:7955)]

 Score = 128 (50.1 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 37/138 (26%), Positives = 54/138 (39%)

Query:    47 ENLTPDFPSQKIVGGIGY-GSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPP 105
             EN  PD  +Q+      Y G  +   +C S  Y        R +   +P I +   NYPP
Sbjct:    35 ENTGPDINTQRQNKHTFYTGPVLKFQYCISUGYSKVFQEYSRSISQLYPDIRIEGDNYPP 94

Query:   106 PLPKRLLAKXXXXXXXXXXXXXXXXEQIFPMLGM-TPPPWYYSLRANRFGSIASTWLIGN 164
                 + L                  +  F M GM TP  W +  + N+  S    + I N
Sbjct:    95 KPINKYLGNFLSYFKLLAIALIVTGQNPFQMFGMNTPRIWAWG-QENKIFSCLMAFFISN 153

Query:   165 FLQSFLQSSGAFEVYCND 182
              L++   S+GAFE+  ND
Sbjct:   154 MLETHFLSTGAFEITLND 171

GO:0008430 "selenium binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

WB|WBGene00009238 F28H7.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 123 (48.4 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 29/115 (25%), Positives = 47/115 (40%)

Query:    68 VNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKXXXXXXXXXXXXX 127
             + I +C SC Y+          + ++PG+ +   N+ P   K  LA+             
Sbjct:    72 LTILYCVSCGYKQAFNQFYEFAKEKYPGLVIEGGNFSPDFWKGCLAQIVGVAKIGLIAIV 131

Query:   128 XXXEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCND 182
                   F  +G   P    +   NRF      ++IGN  +S L S+GAFE++  D
Sbjct:   132 ITGSNPFEYIGFGYPQILQTAHYNRFSYSLLVFMIGNLFESTLSSTGAFEIFLGD 186

GO:0008430 "selenium binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

WB|WBGene00007955 C35C5.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 118 (46.6 bits), Expect = 6.0e-07, P = 6.0e-07
 Identities = 28/119 (23%), Positives = 50/119 (42%)

Query:    67 TVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKXXXXXXXXXXXX 126
             T+ I +C SC Y+          + ++P + +  AN+ P L K  +A+            
Sbjct:    86 TLRIFYCVSCGYKQAFDQFTTFAKEKYPNMPIEGANFAPVLWKAYVAQALSFVKMAVLVL 145

Query:   127 XXXXEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLV 185
                    F   G+  P        N+  S    +++GN ++  L S+GAFEVY  ++ +
Sbjct:   146 VLGGINPFERFGLGYPQILQHAHGNKMSSCMLVFMLGNLVEQSLISTGAFEVYLGNEQI 204

GO:0008430 "selenium binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|E2QXW4 SELT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 104 (41.7 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 31/132 (23%), Positives = 54/132 (40%)

Query:    54 PSQKIVGGIGYGSTVNINFCA-SCSYRGTAITMKRMLETQFPGIDVVLANY-PPPLPKRL 111
             PS+++      G  +    C  S SYR       R++  ++P I +   NY P P+  R 
Sbjct:    27 PSKRLKMQYATGPLLKFQICCLSKSYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYSRH 86

Query:   112 LAKXXXXXXXXXXXXXXXXEQIFPMLGMTPPP-WYYSLRANRFGSIASTWLIGNFLQSFL 170
             +A                 +  F   GM  P  W +  + N+  +    + + N +++  
Sbjct:    87 IASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWG-QENKVYACMMVFFLSNMIENQC 145

Query:   171 QSSGAFEVYCND 182
              S+GAFE+  ND
Sbjct:   146 MSTGAFEITLND 157

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0008430 "selenium binding" evidence=IEA

UNIPROTKB|Q5ZJN8 SELT "Selenoprotein T" [Gallus gallus (taxid:9031)]

 Score = 103 (41.3 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 29/130 (22%), Positives = 51/130 (39%)

Query:    54 PSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLA 113
             P++K+      G  +    C S  YR       R++  ++P I +   NY P    R +A
Sbjct:    31 PAKKLRMAYATGPLLKFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIA 90

Query:   114 KXXXXXXXXXXXXXXXXEQIFPMLGMTPPP-WYYSLRANRFGSIASTWLIGNFLQSFLQS 172
                              +  F   GM  P  W +  + N+  +    + + N +++   S
Sbjct:    91 SFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWG-QENKVYACMMVFFLSNMIENQCMS 149

Query:   173 SGAFEVYCND 182
             +GAFE+  ND
Sbjct:   150 TGAFEITLND 159

GO:0008430 "selenium binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|P62341 SELT "Selenoprotein T" [Homo sapiens (taxid:9606)]

 Score = 102 (41.0 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 29/130 (22%), Positives = 51/130 (39%)

Query:    54 PSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLA 113
             PS+++      G  +    C S  YR       R++  ++P I +   NY P    R +A
Sbjct:    27 PSKRLKMQYATGPLLKFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIA 86

Query:   114 KXXXXXXXXXXXXXXXXEQIFPMLGMTPPP-WYYSLRANRFGSIASTWLIGNFLQSFLQS 172
                              +  F   GM  P  W +  + N+  +    + + N +++   S
Sbjct:    87 SFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWG-QENKVYACMMVFFLSNMIENQCMS 145

Query:   173 SGAFEVYCND 182
             +GAFE+  ND
Sbjct:   146 TGAFEITLND 155

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0001514 "selenocysteine incorporation" evidence=NAS

GO:0008430 "selenium binding" evidence=NAS

UNIPROTKB|I3LV73 SELT "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 102 (41.0 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 29/130 (22%), Positives = 51/130 (39%)

Query:    54 PSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLA 113
             P +++      G  +    C S SYR       R++  ++P I +   NY P    R +A
Sbjct:    27 PGKRLKMQYATGPLLKFQICLSLSYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIA 86

Query:   114 KXXXXXXXXXXXXXXXXEQIFPMLGMTPPP-WYYSLRANRFGSIASTWLIGNFLQSFLQS 172
                              +  F   GM  P  W +  + N+  +    + + N +++   S
Sbjct:    87 SFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWG-QENKVYACMMVFFLSNMIENQCMS 145

Query:   173 SGAFEVYCND 182
             +GAFE+  ND
Sbjct:   146 TGAFEITLND 155

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0008430 "selenium binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9STZ2	SELT_ARATH	No assigned EC number	0.6827	0.9263	0.8421	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	190
TIGR02174	72	TIGR02174, CXXU_selWTH, selT/selW/selH selenoprote	5e-09
pfam10262	76	pfam10262, Rdx, Rdx family	6e-05

>gnl|CDD|233762 TIGR02174, CXXU_selWTH, selT/selW/selH selenoprotein domain

 Score = 50.4 bits (121), Expect = 5e-09
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 68  VNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPP 105
           V + +C SC Y+  A  +K+ L  +FP +++   N PP
Sbjct: 1   VEVEYCGSCGYKPRAAWLKQELLEEFPDLEIEGENTPP 38

This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam. Length = 72

>gnl|CDD|204425 pfam10262, Rdx, Rdx family

 Score = 39.6 bits (93), Expect = 6e-05
 Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 14/68 (20%)

Query: 67  TVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGI 126
            V I +C  C +   A  + + L + FP     +   P                 G   +
Sbjct: 2   KVTIEYCTQCGWLLRAAWLAQELLSTFPDELGEVELSPGT--------------GGAFEV 47

Query: 127 VVAGEQIF 134
            V GE I+
Sbjct: 48  TVNGELIW 55

This entry is an approximately 100 residue region of selenoprotein-T, conserved from plants to humans. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins, including selenoprotein T. However, despite its binding to UGTR and that its mRNA is up-regulated in extended asphyxia, the function of the protein and hence of this region of it is unknown. Selenoprotein W contains selenium as selenocysteine in the primary protein structure and levels of this selenoprotein are affected by selenium. Length = 76

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	190
KOG3286	226	consensus Selenoprotein T [General function predic	100.0
PF10262	76	Rdx: Rdx family; InterPro: IPR011893 This entry re	99.7
TIGR02174	72	CXXU_selWTH selT/selW/selH selenoprotein domain. T	99.65
COG3526	99	Uncharacterized protein conserved in bacteria [Pos	88.99

>KOG3286 consensus Selenoprotein T [General function prediction only]

Probab=100.00  E-value=4.4e-70  Score=460.47  Aligned_cols=188  Identities=40%  Similarity=0.710  Sum_probs=166.5

Q ss_pred             CcchhHHHHHHHHHHHhhhhhhccCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCc---cccccCCCceEEEEeccCc
Q 029622            1 MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPIP-SENLTPDFPSQK---IVGGIGYGSTVNINFCASC   76 (190)
Q Consensus         1 ~~~~~~~l~g~~~~~~~~d~~~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~G~tV~i~YC~SC   76 (190)
                      |||+|++++|||+|++|||+|++|+|+.+.-.+|.++|..+..-| .-+++.+++.||   ..++++.|+|++|+||.||
T Consensus         1 M~r~~~iiiGl~~f~~~~Dvf~~~tp~e~s~e~h~~~~~~~~~~p~~~~e~~~~~g~ke~gv~~~~~~~ptl~i~fCvSC   80 (226)
T KOG3286|consen    1 MSRFGLIIIGLPFFLSCSDVFRLFTPPEHSDENHQSPKDDFEAEPDEIDETSFAQGQKESGVGKHIKYGPTLEINFCVSC   80 (226)
T ss_pred             CCccceeeehhHHHHHHHHHHHccCCCcccccccCCCCccccccccccchhcccCcccccCcccccccCCcEEEEEEEec
Confidence            999999999999999999999999943332111111111111112 556889999998   3346678999999999999


Q ss_pred             CcchhHHHHHHHHHhhCCCeEEecccCCCChHHHHHHhHhhHHHHHHHhHhhcCCccccccCCCchhhhhhhhcCchhHH
Q 029622           77 SYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSI  156 (190)
Q Consensus        77 GY~~~f~e~k~~L~~~yP~i~V~G~nYpPp~~k~~Lak~l~~~q~~lI~liv~G~~iF~~LG~~~P~w~~~~~~NK~~~~  156 (190)
                      |||++|+|++++++++||+++|+|+||+|++||++|||+++++|+++|++|+.|++||+++|+++|+||+|.++||+++|
T Consensus        81 gYk~af~~~~~~l~ekyPgl~IegaNy~Pp~~kr~lAk~v~v~k~gvIglii~G~~pF~~iGl~~P~iwqh~~aNkf~sc  160 (226)
T KOG3286|consen   81 GYKQAFEQYKKFLKEKYPGLDIEGANYPPPAWKRYLAKVVSVVKMGVIGLIIGGKNPFEFIGLGYPSIWQHAQANKFYSC  160 (226)
T ss_pred             CcHHHHHHHHHHHHhhCCCceeecCcCCCchHHHHHHHHHHHHhheeEEEEeccCCccceecCCCcHHHHHHHhhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccccEEEEECCeEeeec
Q 029622          157 ASTWLIGNFLQSFLQSSGAFEVYCNDDLVSDL  188 (190)
Q Consensus       157 ~~~fflgN~ie~~L~sTGAFEIylNd~lV~S~  188 (190)
                      ||+||+||++|++|+|||||||+|||++||||
T Consensus       161 m~vf~lGN~les~L~StGAFEI~lndepVwSK  192 (226)
T KOG3286|consen  161 MMVFFLGNMLESQLISTGAFEITLNDEPVWSK  192 (226)
T ss_pred             HHHHHHHHHHHHHhhccCcEEEEECCEeeeeh
Confidence            99999999999999999999999999999998

>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life

Probab=99.70  E-value=2.3e-17  Score=118.95  Aligned_cols=35  Identities=37%  Similarity=0.777  Sum_probs=33.7

Q ss_pred             ceEEEEeccCcCcchhHHHHHHHHHhhCCC--eEEec
Q 029622           66 STVNINFCASCSYRGTAITMKRMLETQFPG--IDVVL  100 (190)
Q Consensus        66 ~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~--i~V~G  100 (190)
                      |+|+|+||.+|+|++.|.++++.|+++||+  .+|++
T Consensus         1 p~V~IeYC~~C~~~~~a~~l~~~l~~~fp~~~~~v~~   37 (76)
T PF10262_consen    1 PKVTIEYCTSCGYRPRALELAQELLQTFPDRIAEVEL   37 (76)
T ss_dssp             EEEEEEEETTTTCHHHHHHHHHHHHHHSTTTCSEEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcceEEEE
Confidence            589999999999999999999999999999  88988

Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.

>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain

Probab=99.65  E-value=2.2e-16  Score=113.39  Aligned_cols=38  Identities=37%  Similarity=0.786  Sum_probs=36.2

Q ss_pred             EEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCCC
Q 029622           68 VNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPP  105 (190)
Q Consensus        68 V~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYpP  105 (190)
                      |+|+||.+|||+..|.++++.|+++||+.+++++++||
T Consensus         1 V~IeyC~~C~y~~Ra~~l~q~L~~~Fp~~~v~~~~~~~   38 (72)
T TIGR02174         1 VEIEYCGSCGYKPRAAWLKQELLEEFPDLEIEGENTPP   38 (72)
T ss_pred             CEEEECCCCCChHHHHHHHHHHHHHCCCCeeEEeeecC
Confidence            68999999999999999999999999999999999876

This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.

>COG3526 Uncharacterized protein conserved in bacteria [Posttranslational modification, protein turnover, chaperones]

Probab=88.99  E-value=0.31  Score=37.33  Aligned_cols=16  Identities=31%  Similarity=0.710  Sum_probs=14.3

Q ss_pred             cccEEEEECCeEeeec
Q 029622          173 SGAFEVYCNDDLVSDL  188 (190)
Q Consensus       173 TGAFEIylNd~lV~S~  188 (190)
                      -|-|||++||++||..
T Consensus        47 GG~FeI~~dg~~iWeR   62 (99)
T COG3526          47 GGVFEITCDGVLIWER   62 (99)
T ss_pred             CceEEEEECCEEEEEe
Confidence            5789999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	190
2npb_A	96	Selenoprotein W; structure, thioredoxin-like fold,	2e-04

>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus} Length = 96

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 13/67 (19%)

Query: 68  VNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIV 127
           V + +  +C Y+   + +K  LE +FPG   +     P                G   + 
Sbjct: 5   VRVVYSGACGYKPKYLQLKEKLEHEFPGCLDICGEGTPQ-------------VTGFFEVT 51

Query: 128 VAGEQIF 134
           VAG+ + 
Sbjct: 52  VAGKLVH 58

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	190
2npb_A	96	Selenoprotein W; structure, thioredoxin-like fold,	99.65
2oka_A	104	Hypothetical protein; PAR82, NESG, structural geno	99.46
2p0g_A	105	Selenoprotein W-related protein; VCR75, structural	99.44
2fa8_A	105	Hypothetical protein ATU0228; ALPH-beta structure,	99.44
2ljk_A	117	Protein C17ORF37; MIEN1, oncoprotein, signaling pr	99.34
2ojl_A	108	Hypothetical protein; BPR68, NESG, Q7WAF1, structu	98.87
3dex_A	107	SAV_2001; alpha-beta protein, structural genomics,	98.87
4gqo_A	433	LMO0859 protein; virulence, pathogenesis, vaccine	96.4
3k01_A	412	Acarbose/maltose binding protein GACH; ABC transpo	95.51
2heu_A	401	Sugar ABC transporter, sugar-binding protein; peri	95.26
3quf_A	414	Extracellular solute-binding protein, family 1; st	94.78
2a4h_A	126	Selenoprotein SEP15; redox, oxidoreductase; NMR {D	94.74
2qry_A	330	Thiamine-binding periplasmic protein; thiamin bind	90.11
4g68_A	456	ABC transporter; transport protein; HET: XYS; 1.80	89.71
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	88.4
4hw8_A	420	Bacterial extracellular solute-binding protein, P;	87.4
2vgq_A	477	Maltose-binding periplasmic protein, mitochondrial	86.94
3k6v_A	354	Solute-binding protein MA_0280; MODA, molybdate, p	85.64
2joi_A	118	Hypothetical protein TA0095; structural genomics,	84.89
2v84_A	343	Spermidine/putrescine ABC transporter, periplasmi	84.54
2f9f_A	177	First mannosyl transferase (WBAZ-1); alpha-beta pr	84.14
1tvm_A	113	PTS system, galactitol-specific IIB component; pho	82.8
3odm_A	560	Pepcase, PEPC, phosphoenolpyruvate carboxylase; be	81.19
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	80.95

>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}

Probab=99.65  E-value=1.5e-16  Score=119.81  Aligned_cols=39  Identities=26%  Similarity=0.629  Sum_probs=36.1

Q ss_pred             CCceEEEEeccCcCcchhHHHHHHHHHhhCCC-eEEeccc
Q 029622           64 YGSTVNINFCASCSYRGTAITMKRMLETQFPG-IDVVLAN  102 (190)
Q Consensus        64 ~G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~-i~V~G~n  102 (190)
                      +.++|+|+||++|+|+..|.++++.|.++||+ +.|+++.
T Consensus         1 ~~~~V~I~YC~~C~y~~ra~~laqeLl~~Fp~~l~V~~~l   40 (96)
T 2npb_A            1 MALAVRVVYSGACGYKPKYLQLKEKLEHEFPGCLDICGEG   40 (96)
T ss_dssp             CCEEEEEECCCCSCHHHHHHHHHHHHHHHSBTTEEEEECC
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCcceEEEEEE
Confidence            45789999999999999999999999999999 8888884

>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A

Probab=99.46  E-value=8.5e-14  Score=106.41  Aligned_cols=32  Identities=19%  Similarity=0.390  Sum_probs=30.4

Q ss_pred             CceEEEEeccCcCcchhHHHHHHHHHhhCCCe
Q 029622           65 GSTVNINFCASCSYRGTAITMKRMLETQFPGI   96 (190)
Q Consensus        65 G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i   96 (190)
                      .++|+|+||++|+|+..|..|++.|.++||+.
T Consensus         5 ~p~V~I~YC~~C~~~~Ra~~laqeLl~tF~~~   36 (104)
T 2oka_A            5 KPEIVITYCTQCQWLLRAAWLAQELLSTFADD   36 (104)
T ss_dssp             CCEEEEEEETTTTCHHHHHHHHHHHHHHSTTT
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHHHHHcCcc
Confidence            47999999999999999999999999999984

>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}

Probab=99.44  E-value=1.3e-13  Score=105.50  Aligned_cols=32  Identities=16%  Similarity=0.387  Sum_probs=30.3

Q ss_pred             CceEEEEeccCcCcchhHHHHHHHHHhhCCCe
Q 029622           65 GSTVNINFCASCSYRGTAITMKRMLETQFPGI   96 (190)
Q Consensus        65 G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i   96 (190)
                      .++|+|+||++|+|+..+..|++.|.++||+.
T Consensus         3 ~~~V~I~YC~~C~w~~Ra~~laqeLl~tF~~~   34 (105)
T 2p0g_A            3 KAQIEIYYCRQCNWMLRSAWLSQELLHTFSEE   34 (105)
T ss_dssp             CEEEEEEEETTTTCHHHHHHHHHHHHHHTTTT
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHHHHHcCcc
Confidence            47899999999999999999999999999984

>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23

Probab=99.44  E-value=1e-13  Score=106.03  Aligned_cols=32  Identities=19%  Similarity=0.366  Sum_probs=30.2

Q ss_pred             CceEEEEeccCcCcchhHHHHHHHHHhhCCCe
Q 029622           65 GSTVNINFCASCSYRGTAITMKRMLETQFPGI   96 (190)
Q Consensus        65 G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i   96 (190)
                      -++|+|+||.+|+|+..|.++++.|.++||+.
T Consensus         7 ~~~V~I~YC~~C~~~~Ra~~laqeLl~tF~~~   38 (105)
T 2fa8_A            7 KPRIAIRYCTQCNWLLRAGWMAQEILQTFASD   38 (105)
T ss_dssp             CCEEEEEEETTTTCHHHHHHHHHHHHHHHGGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCcc
Confidence            37899999999999999999999999999984

>2ljk_A Protein C17ORF37; MIEN1, oncoprotein, signaling protein; NMR {Homo sapiens}

Probab=99.34  E-value=5.7e-13  Score=103.67  Aligned_cols=39  Identities=23%  Similarity=0.705  Sum_probs=35.3

Q ss_pred             cCCCceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEec
Q 029622           62 IGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVL  100 (190)
Q Consensus        62 ~~~G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G  100 (190)
                      .+.|++|+|+||..|+|...+.++++.|.+.||+.+|++
T Consensus        21 ~~~~vrV~IeYC~~C~~~~ra~~laqeLl~tFp~~~V~l   59 (117)
T 2ljk_A           21 PGSGVRIVVEYCEPCGFEATYLELASAVKEQYPGIEIES   59 (117)
T ss_dssp             TTCSCCCEEEECTTTTCHHHHHHHHHHHTTTCSSSCCEE
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCcceEEE
Confidence            367789999999999999999999999999999976654

>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium; 2.10A {Bordetella parapertussis}

Probab=98.87  E-value=2.1e-09  Score=82.62  Aligned_cols=31  Identities=23%  Similarity=0.459  Sum_probs=29.3

Q ss_pred             CceEEEEeccCcCcchhHHHHHHHHHhhCCC
Q 029622           65 GSTVNINFCASCSYRGTAITMKRMLETQFPG   95 (190)
Q Consensus        65 G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~   95 (190)
                      .++|+|+||..|+|...+..+++.|.++||+
T Consensus         8 ~~~V~I~YC~~C~w~lRa~~laqeLl~tF~~   38 (108)
T 2ojl_A            8 PPRIAIQYCTQCQWLLRAAWMAQELLSTFGA   38 (108)
T ss_dssp             CCEEEEEEETTTTCHHHHHHHHHHHHHHHGG
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHHHHhcCc
Confidence            5899999999999999999999999999986

>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0

Probab=98.87  E-value=4e-09  Score=80.99  Aligned_cols=33  Identities=24%  Similarity=0.410  Sum_probs=30.7

Q ss_pred             CCceEEEEeccCcCcchhHHHHHHHHHhhCCCe
Q 029622           64 YGSTVNINFCASCSYRGTAITMKRMLETQFPGI   96 (190)
Q Consensus        64 ~G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i   96 (190)
                      ..++|+|+||..|+|...+..+++.|.++||+.
T Consensus        11 ~~p~V~I~YC~~C~w~lRa~~laqeLl~tF~~~   43 (107)
T 3dex_A           11 HTHRVQIEYCTQCRWLPRAAWLAQELLTTFETE   43 (107)
T ss_dssp             CCEEEEEEEETTTTCHHHHHHHHHHHHHHSTTT
T ss_pred             CCCEEEEEECCCCCChHHHHHHHHHHHHhcccc
Confidence            468999999999999999999999999999964

>4gqo_A LMO0859 protein; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: MSE PGE; 2.10A {Listeria monocytogenes}

Probab=96.40  E-value=0.0045  Score=52.84  Aligned_cols=44  Identities=11%  Similarity=0.143  Sum_probs=30.0

Q ss_pred             CCCceEEEEeccCcC--cchhHHHHHHHHHhhCCCeEEecccCCCC
Q 029622           63 GYGSTVNINFCASCS--YRGTAITMKRMLETQFPGIDVVLANYPPP  106 (190)
Q Consensus        63 ~~G~tV~i~YC~SCG--Y~~~f~e~k~~L~~~yP~i~V~G~nYpPp  106 (190)
                      ..+.+++|.+|..-+  ....++++.+.-++++|+++|+-+.++..
T Consensus        25 ~~~gk~~it~W~~~~~~~~~~~~~~i~~F~~~~p~i~V~~~~~~~~   70 (433)
T 4gqo_A           25 DDNGKTKVTFWAAPNPTQVKYWDEMAKAYEKENPDVTIEVSQMKES   70 (433)
T ss_dssp             ----CEEEEEEECSCHHHHHHHHHHHHHHHHHCTTEEEEEEECCCS
T ss_pred             CCCCCEEEEEEeCCCchHHHHHHHHHHHHHHHCcCeEEEEEEcCCc
Confidence            344567888886432  34557777777889999999998887753

>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*

Probab=95.51  E-value=0.028  Score=47.78  Aligned_cols=48  Identities=23%  Similarity=0.190  Sum_probs=34.0

Q ss_pred             ceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCCCChHHHHHHhHh
Q 029622           66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVV  116 (190)
Q Consensus        66 ~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYpPp~~k~~Lak~l  116 (190)
                      .+|++-...+-.....++++.+..++++|+++|+-+.++   +..+..|+.
T Consensus        28 ~~l~~w~~~~~~~~~~~~~~~~~f~~~~pgi~V~~~~~~---~~~~~~kl~   75 (412)
T 3k01_A           28 GTVTFWDTSNEAEKATYQALAEGFEKEHPKVDVKYVNVP---FGEANAKFK   75 (412)
T ss_dssp             EEEEEEECCCTTTHHHHHHHHHTHHHHCTTEEEEEEECC---HHHHHHHHH
T ss_pred             cEEEEecCCCCcchHHHHHHHHHHHHHCcCeEEEEEecC---hHHHHHHHH
Confidence            367776665533567788899999999999999888773   444444443

>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A

Probab=95.26  E-value=0.04  Score=46.92  Aligned_cols=37  Identities=22%  Similarity=0.173  Sum_probs=25.8

Q ss_pred             ceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccC
Q 029622           66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANY  103 (190)
Q Consensus        66 ~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nY  103 (190)
                      .||++..+.+ .....++++.+..++++|+++|+-+.+
T Consensus        19 ~tl~~~~~~~-~~~~~~~~~~~~f~~~~p~i~V~~~~~   55 (401)
T 2heu_A           19 VTIEYFNQKK-EMTKTLEEITRDFEKENPKIKVKVVNV   55 (401)
T ss_dssp             EEEEEECCCG-GGHHHHHHHHHHHHHHCTTEEEEEECC
T ss_pred             EEEEEEecCC-cHHHHHHHHHHHHHHHCcCeEEEEEeC
Confidence            3555544322 223667888888899999999998776

>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}

Probab=94.78  E-value=0.041  Score=46.70  Aligned_cols=44  Identities=9%  Similarity=0.127  Sum_probs=29.5

Q ss_pred             eEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCCCChHHHHHHhH
Q 029622           67 TVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKV  115 (190)
Q Consensus        67 tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYpPp~~k~~Lak~  115 (190)
                      +|++..+.+   ...++++.+..++++|+++|+-+.+++  +..+..|+
T Consensus        31 ~l~~~~~~~---~~~~~~~~~~f~~~~p~i~V~~~~~~~--~~~~~~kl   74 (414)
T 3quf_A           31 KISFYSYFK---DNQIGEVVKGFEKKNPDITLDVQYGQD--PAQYISTL   74 (414)
T ss_dssp             EEEEEESSC---HHHHHHHHHHHHHHCTTEEEEEEECSS--HHHHHHHH
T ss_pred             EEEEEecCC---chHHHHHHHHHHHHCcCeEEEEEeCCC--hHHHHHHH
Confidence            455544432   457888888889999999999877643  33444443

>2a4h_A Selenoprotein SEP15; redox, oxidoreductase; NMR {Drosophila melanogaster} SCOP: c.47.1.23

Probab=94.74  E-value=0.031  Score=43.89  Aligned_cols=38  Identities=13%  Similarity=0.463  Sum_probs=29.0

Q ss_pred             EEEEeccCcCcchhHHHHHHHHHh----hCCCeEEecccCCCCh
Q 029622           68 VNINFCASCSYRGTAITMKRMLET----QFPGIDVVLANYPPPL  107 (190)
Q Consensus        68 V~i~YC~SCGY~~~f~e~k~~L~~----~yP~i~V~G~nYpPp~  107 (190)
                      -.++.| .|. -+.|-|++.+|++    .||+++|.-....+|-
T Consensus        23 A~LEvC-~CK-L~~yPeVk~FI~~d~~~~fpnL~vkyv~Ga~P~   64 (126)
T 2a4h_A           23 AILEVC-TCK-FRAYPQIQAFIQSGRPAKFPNLQIKYVRGLDPV   64 (126)
T ss_dssp             BEEECC-SCT-TTTCTTHHHHHHHTTGGGCTTBCCCCCSSCCCE
T ss_pred             eEEEEc-chh-hhcCHHHHHHHccchhhhCCceEEEEecCCCCE
Confidence            366779 887 7788899999986    4999988776666664

>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli}

Probab=90.11  E-value=0.31  Score=40.27  Aligned_cols=48  Identities=13%  Similarity=0.213  Sum_probs=29.5

Q ss_pred             CCCceEEEEeccCcCcch---hHHHHHHHHHhhCCCeEEecccCCCChHHHHHHhH
Q 029622           63 GYGSTVNINFCASCSYRG---TAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKV  115 (190)
Q Consensus        63 ~~G~tV~i~YC~SCGY~~---~f~e~k~~L~~~yP~i~V~G~nYpPp~~k~~Lak~  115 (190)
                      ..+.+|+|..+.  ++..   .++++.+..++++ +++|+-+.++-  ...+..|+
T Consensus        20 ~~~~~L~v~~~~--~~~~~~~~~~~~~~~Fe~~~-gi~V~~~~~~~--~~~~~~kl   70 (330)
T 2qry_A           20 HMKPVLTVYTYD--SFAADWGPGPVVKKAFEADC-NCELKLVALED--GVSLLNRL   70 (330)
T ss_dssp             --CCEEEEEECH--HHHSTTSSHHHHHHHHHTTS-CSEEEEEECSC--HHHHHHHH
T ss_pred             cCCCeEEEEecc--ccccchhhhHHHHHHHHHHH-CCEEEEEeCCC--HHHHHHHH
Confidence            345677776553  3433   3578888888888 99998776641  33444443

>4g68_A ABC transporter; transport protein; HET: XYS; 1.80A {Caldanaerobius} PDB: 4g68_B*

Probab=89.71  E-value=0.27  Score=42.67  Aligned_cols=48  Identities=8%  Similarity=0.155  Sum_probs=29.4

Q ss_pred             CceEEEEeccCc---CcchhHHHHHHHHHhhCCCeEEecccCCCChHHHHHHhH
Q 029622           65 GSTVNINFCASC---SYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKV  115 (190)
Q Consensus        65 G~tV~i~YC~SC---GY~~~f~e~k~~L~~~yP~i~V~G~nYpPp~~k~~Lak~  115 (190)
                      +.+|+|.||..-   ..+..++++.+.-++++|+|+|+-+..+   +..+..|+
T Consensus        60 ~~~vtit~w~~~~~~~~~~~~~~~i~~F~~~~p~I~V~~~~~~---~~~~~~kl  110 (456)
T 4g68_A           60 SKKITLTFWNLFTGEPAKTKVKEIIDQWNKENPNVQIVESVTE---NDAYKTKI  110 (456)
T ss_dssp             ---CEEEEEECCCSTTHHHHHHHHHHHHHHHCTTSEEEEEECC---HHHHHHHH
T ss_pred             CCCEEEEEeeCCCCchHHHHHHHHHHHHHHHCcCeEEEEEECC---cHHHHHHH
Confidence            346677776432   2344577787788899999999876544   44444443

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=88.40  E-value=0.31  Score=40.97  Aligned_cols=39  Identities=8%  Similarity=0.003  Sum_probs=25.8

Q ss_pred             CceEEEEec---cCcCcchhHHHHHHHHHhhCCCeE---EecccC
Q 029622           65 GSTVNINFC---ASCSYRGTAITMKRMLETQFPGID---VVLANY  103 (190)
Q Consensus        65 G~tV~i~YC---~SCGY~~~f~e~k~~L~~~yP~i~---V~G~nY  103 (190)
                      +..+.|.|.   .-||..+.|+++++.+...-+++.   |.-+.|
T Consensus        33 ~~~vlV~Fy~~ApWCgl~P~~e~lA~~~~~~~~~v~~akVD~d~~   77 (248)
T 2c0g_A           33 FPYSVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDY   77 (248)
T ss_dssp             SSEEEEEEEESSCCSHHHHHHHHHHHHHHHHCSSEEEEEEEECSS
T ss_pred             CCCEEEEEECCCCCCccHHHHHHHHHHHhccCCCeEEEEEECCcc
Confidence            334555544   889999999999988765346654   444444

>4hw8_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MAL; 2.25A {Staphylococcus aureus subsp} PDB: 4hs7_A*

Probab=87.40  E-value=0.75  Score=39.11  Aligned_cols=42  Identities=12%  Similarity=0.037  Sum_probs=29.3

Q ss_pred             ceEEEEecc-CcCcchhHHHHHHHHHhhCCCeEEecccCCCChH
Q 029622           66 STVNINFCA-SCSYRGTAITMKRMLETQFPGIDVVLANYPPPLP  108 (190)
Q Consensus        66 ~tV~i~YC~-SCGY~~~f~e~k~~L~~~yP~i~V~G~nYpPp~~  108 (190)
                      .+++|.++. +-.....++++.+..++++ +++|+-+.++-.-+
T Consensus        39 ~~~tl~~w~~~~~~~~~~~~~~~~f~~~~-gi~V~~~~~~~~~~   81 (420)
T 4hw8_A           39 KPNQLTMWVDGDKQMAFYKKITDQYTKKT-GIKVKLVNIGQNDQ   81 (420)
T ss_dssp             CCSEEEEEESSHHHHHHHHHHHHHHHHHH-CCEEEEEECCTTTH
T ss_pred             CCeEEEEecCCCcchHHHHHHHHHHHHHh-CCEEEEEecCchhH
Confidence            344444553 3335677888888889999 99999888875443

>2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}

Probab=86.94  E-value=0.34  Score=42.72  Aligned_cols=39  Identities=13%  Similarity=0.029  Sum_probs=23.2

Q ss_pred             CCceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCC
Q 029622           64 YGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYP  104 (190)
Q Consensus        64 ~G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYp  104 (190)
                      ...||++-.. +=.....++++.+..+ +.|+++|+-+.++
T Consensus        18 ~~~tlt~w~~-~~~~~~~~~~~i~~F~-~~pgi~V~~~~~~   56 (477)
T 2vgq_A           18 EEGKLVIWIN-GDKGYNGLAEVGKKFE-KDTGIKVTVEHPD   56 (477)
T ss_dssp             CTTSEEEECC-TTSCHHHHHHHHHHHH-HHHSCCEEEECCT
T ss_pred             CCcEEEEEeC-CCcchHHHHHHHHHHH-hCcCCeEEEEecC
Confidence            3446665433 1123355666666666 7899988877664

>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A

Probab=85.64  E-value=0.65  Score=40.87  Aligned_cols=33  Identities=21%  Similarity=0.294  Sum_probs=27.0

Q ss_pred             ceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEec
Q 029622           66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVVL  100 (190)
Q Consensus        66 ~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G  100 (190)
                      .+|+|....  +++..++++.+..++++|+++|+-
T Consensus        43 ~~L~V~~a~--sl~~~~~~l~~~Fe~~~pgv~V~~   75 (354)
T 3k6v_A           43 EVLTVFHAG--SLSVPFEELEAEFEAQHPGVDVQR   75 (354)
T ss_dssp             CEEEEEEEG--GGHHHHHHHHHHHHHHSTTCEEEE
T ss_pred             CcEEEEEec--chHHHHHHHHHHHHHHCCCcEEEE
Confidence            467776554  579999999999999999998765

>2joi_A Hypothetical protein TA0095; structural genomics, COG4004 orthologous group, structural genomics consortium, SGC, unknown function; NMR {Thermoplasma acidophilum}

Probab=84.89  E-value=0.68  Score=35.85  Aligned_cols=44  Identities=5%  Similarity=-0.056  Sum_probs=30.5

Q ss_pred             cccCCCceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCC
Q 029622           60 GGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYP  104 (190)
Q Consensus        60 ~~~~~G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYp  104 (190)
                      .+...|..| =+|=.--||++..+.+.+.|++.||.+..+|..|-
T Consensus        15 ~~~~~~~~M-qeY~~KRG~k~~lerI~~~l~e~Fg~~~~~g~~~~   58 (118)
T 2joi_A           15 ENLYFQGHM-REYPVKKGFPTDYDSIKRKISELGFDVKSEGDLII   58 (118)
T ss_dssp             --------C-EEECCCSSSCCSHHHHHHHHHHHTCEEEEETTEEE
T ss_pred             chhhhhhhh-hccccccCCCCcHHHHHHHHHHHcCCceecCCEEE
Confidence            344555544 36788889999999999999999999877777653

>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein; polyamine binding, SYPH spermidine, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum}

Probab=84.54  E-value=0.64  Score=38.58  Aligned_cols=35  Identities=17%  Similarity=0.394  Sum_probs=22.6

Q ss_pred             CceEEEEeccCcCcchhHHHHHHHHHhhCCCeEEecccCC
Q 029622           65 GSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYP  104 (190)
Q Consensus        65 G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~i~V~G~nYp  104 (190)
                      +.+|+|..+.+  +.  .+++.+..++++ +++|+-+.++
T Consensus        24 ~~~l~v~~w~~--~~--~~~~~~~Fe~~~-gi~V~~~~~~   58 (343)
T 2v84_A           24 QDVLYLYNWTY--YT--PTSLIKKFEQQY-NVQVVYDDYA   58 (343)
T ss_dssp             -CEEEEEEETT--TS--CHHHHHHHHHHH-TCEEEEEEES
T ss_pred             CCeEEEEeccc--cc--CHHHHHHHHHHH-CCEEEEEeCC
Confidence            45788877753  32  256666667776 9988876653

>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8

Probab=84.14  E-value=3.3  Score=30.96  Aligned_cols=44  Identities=5%  Similarity=-0.261  Sum_probs=30.5

Q ss_pred             EEEeccCcCcchhHHHHHHHHHhhCCCe--EEecccCCCChHHHHHH
Q 029622           69 NINFCASCSYRGTAITMKRMLETQFPGI--DVVLANYPPPLPKRLLA  113 (190)
Q Consensus        69 ~i~YC~SCGY~~~f~e~k~~L~~~yP~i--~V~G~nYpPp~~k~~La  113 (190)
                      .|.|..+-...+..+.+-+++++. |++  .|.|..-.....++.+.
T Consensus        25 ~i~~~G~~~~~Kg~~~li~a~~~l-~~~~l~i~G~~~~~~~l~~~~~   70 (177)
T 2f9f_A           25 FWLSVNRIYPEKRIELQLEVFKKL-QDEKLYIVGWFSKGDHAERYAR   70 (177)
T ss_dssp             CEEEECCSSGGGTHHHHHHHHHHC-TTSCEEEEBCCCTTSTHHHHHH
T ss_pred             EEEEEeccccccCHHHHHHHHHhC-CCcEEEEEecCccHHHHHHHHH
Confidence            467888888888899998888765 775  46776544445555544

>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}

Probab=82.80  E-value=4.1  Score=29.94  Aligned_cols=26  Identities=8%  Similarity=0.118  Sum_probs=17.9

Q ss_pred             eEEEEeccCcCcchhH---HHHHHHHHhh
Q 029622           67 TVNINFCASCSYRGTA---ITMKRMLETQ   92 (190)
Q Consensus        67 tV~i~YC~SCGY~~~f---~e~k~~L~~~   92 (190)
                      ..+|..|++-|+-...   +.+++.+++.
T Consensus        21 ~kkIlvvC~sG~gTS~ll~~kl~~~~~~~   49 (113)
T 1tvm_A           21 KRKIIVACGGAVATSTMAAEEIKELCQSH   49 (113)
T ss_dssp             SEEEEEESCSCSSHHHHHHHHHHHHHHHT
T ss_pred             ccEEEEECCCCHHHHHHHHHHHHHHHHHc
Confidence            4688889998887655   4555555543

>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens}

Probab=81.19  E-value=2.8  Score=39.86  Aligned_cols=82  Identities=13%  Similarity=0.086  Sum_probs=57.4

Q ss_pred             chhHHHHHHHHHhhCC------Ce-----EEecccCCCChHHHHHHhHhhHHHHHHHhHhhcCCccccccCCCchhhhhh
Q 029622           79 RGTAITMKRMLETQFP------GI-----DVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYS  147 (190)
Q Consensus        79 ~~~f~e~k~~L~~~yP------~i-----~V~G~nYpPp~~k~~Lak~l~~~q~~lI~liv~G~~iF~~LG~~~P~w~~~  147 (190)
                      -...+|+..+++.--+      ++     +.||-.=|=.-.++++++...       .=+.-|+++|-..-+ |-+|++.
T Consensus        42 i~~~dEv~EA~~~~s~~~~~~lGcdE~MwD~EGK~td~~~~~kl~s~~~~-------~~~~lG~d~flT~Rv-PNp~~E~  113 (560)
T 3odm_A           42 ISIQQEPAEAIKGLTPQDKGGLGIEEVMIDFEGKLTPYHQTSQIALGLIS-------NGIIPGKDVRVTPRI-PNANKES  113 (560)
T ss_dssp             CCTTTHHHHHHHHTSCGGGTSCCCCEEEEECSSBCCCTTHHHHHHHHHHT-------TTCCBTTTBEEEEEC-CCTTTSC
T ss_pred             CCccccHHHHHHHhhhccccCCCCceeeecCCCCcCcHHHHHHHHHhhhh-------cCCCCCCceEEecCC-CChhhhh
Confidence            4567888888877767      43     579998888999999999886       224559999988777 4446555


Q ss_pred             hhcCchhHHHHHHHHHHHHHHhh
Q 029622          148 LRANRFGSIASTWLIGNFLQSFL  170 (190)
Q Consensus       148 ~~~NK~~~~~~~fflgN~ie~~L  170 (190)
                      . +.|+.+ |+.....|.....+
T Consensus       114 ~-er~~l~-lesi~~a~d~a~~y  134 (560)
T 3odm_A          114 V-FRQLMS-IMSIIETNVQSKEL  134 (560)
T ss_dssp             H-HHHHHH-HHHHHHHHHHHHHH
T ss_pred             H-HHHHHH-HHHHHHHHHHHHHh
Confidence            4 356666 55556666655433

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=80.95  E-value=0.91  Score=32.14  Aligned_cols=39  Identities=8%  Similarity=-0.016  Sum_probs=25.6

Q ss_pred             ceEEEEeccCcCcchhHHHHHHHHHhhCCC--eEEecccCC
Q 029622           66 STVNINFCASCSYRGTAITMKRMLETQFPG--IDVVLANYP  104 (190)
Q Consensus        66 ~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~--i~V~G~nYp  104 (190)
                      +.+...|-..|++=+.+...-+.+.++|++  +.+..-|..
T Consensus        35 ~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d   75 (121)
T 2j23_A           35 VVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVD   75 (121)
T ss_dssp             CEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETT
T ss_pred             EEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECc
Confidence            456666666788777776666667778877  665554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	190
d2fa8a1	86	Hypothetical protein Atu0228 {Agrobacterium tumefa	98.78

>d2fa8a1 c.47.1.23 (A:4-89) Hypothetical protein Atu0228 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Selenoprotein W-related
domain: Hypothetical protein Atu0228
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.78  E-value=4.5e-09  Score=76.15  Aligned_cols=31  Identities=19%  Similarity=0.418  Sum_probs=29.2

Q ss_pred             CceEEEEeccCcCcchhHHHHHHHHHhhCCC
Q 029622           65 GSTVNINFCASCSYRGTAITMKRMLETQFPG   95 (190)
Q Consensus        65 G~tV~i~YC~SCGY~~~f~e~k~~L~~~yP~   95 (190)
                      -|+|.|+||..|||...+..|++.|.+.||+
T Consensus         2 kp~I~IeYC~~C~w~~Ra~wlaqeLl~tF~~   32 (86)
T d2fa8a1           2 KPRIAIRYCTQCNWLLRAGWMAQEILQTFAS   32 (86)
T ss_dssp             CCEEEEEEETTTTCHHHHHHHHHHHHHHHGG
T ss_pred             CCeEEEEECCCCCChHHHHHHHHHHHHhCCc
Confidence            4789999999999999999999999999987