Citrus Sinensis ID: 029636

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Protein Sequence
MVMELTELSLAPTHCVVVDKSNSSSESEDNPSRKRKFLSDFSLLKTEPAIQTSVDLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENKQKLDLELNISSSSVSNCTSAADDDESNNKHHLSSASNNMVALACMNCHLLVILSKSSPSCPNCKFVHSLPNQQTQSSSAKVSGTKSMINTLSLLN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEEEccccccccccccEEcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEcccccccccccccEcccccccccccccHHHccccccccccccccccccEEEEccccccccHHHHHcccccccEEEEEccccccccccccccccccEEEEccccccccccccccccccccccccccccccEEEEEccccEEEEEEEccccccccccEEccccccccccccHcccccccHHHHHHHcc
Coil and Loop (DISEMBL)
mvmeltelslapthcvvvdksnsssesednpsrkrkflsdfsllktepaiqtsvdlqikdplpldweRCLDlqsgrmyyfnrksskkswslpenkqkldlelnissssvsnctsaadddesnnkhhlsSASNNMVALACMNCHLLVIlsksspscpnckfvhslpnqqtqsssakvsgtKSMINTLSLLN
Flexible Loop (DISEMBL)
mvmeltelslapthcvvvdksnsssesednpsrkRKFLSDFSLLKtepaiqtsvdlqikdplplDWERCLDLQSGRMYyfnrksskkswslpeNKQKLDLELNISSSSVSNCTSAADDDESNNKHHLSSASNNMVALACMNCHLLVILSKSSPSCPNCKFVhslpnqqtqsssakvsgtksmintlslln
Low Complexity Region (SEG)
MVMELTELSLAPTHCVVVDKsnsssesednpsRKRKFLSDFSLLKTEPAIQTSVDLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENKQKLDLELNIssssvsNCTSAADDDESNNKHHLSSASNNMVALACMNCHLLVILSKSSPSCPNCKFVHSLPNQQTQSSSAKVSGTKSMINTLSLLN
Disordered region (IsUnstruct)
*************HCVV***********************FSLLKTEPAIQTSVDLQIKDPLPLDWERCLDLQSGRMYYFN****************************************************MVALACMNCHLLVILSKS***CPNCKFV*****************************
Disordered Region (DISOPRED)
************************************************************PLPLDWERCLDLQSGRMYYFNR*****************************************************ALACMNCHLLVILSKSSPSCPNCKFV**********************NTLSLL*
Disordered Region (DISEMBL)
MVMELTELSLAPTHCVV*****************RKFLSDFSLLKTEPAIQTSVDLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENKQKLDLELNISSSS********************SASNNMVALACMNCHLLVILSKSSPSCPNCKFVHSL***************KSMINTLSLLN
Disordered Region (DISPRO)
*V**LTELSLAPTHCVVVD********************D**L**TEPAIQTSVDLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSL*ENKQKLD****IS**************************NNMVALACMNCHLLVILSKSSPSCPNCKFVHSLP*************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVMELTELSLAPTHCVVVDKSNSSSESEDNPSRKRKFLSDFSLLKTEPAIQTSVDLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENKQKLDLELNISSSSVSNCTSAADDDESNNKHHLSSASNNMVALACMNCHLLVILSKSSPSCPNCKFVHSLPNQQTQSSSAKVSGTKSMINTLSLLN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
225433764	220	PREDICTED: uncharacterized protein LOC10	0.963	0.831	0.605	2e-49
224131566	190	predicted protein [Populus trichocarpa]	0.957	0.957	0.647	1e-48
255580394	211	conserved hypothetical protein [Ricinus	0.963	0.867	0.564	1e-47
224065024	188	predicted protein [Populus trichocarpa]	0.868	0.877	0.645	6e-46
414877709	209	TPA: hypothetical protein ZEAMMB73_85904	0.910	0.827	0.435	3e-33
357160394	215	PREDICTED: uncharacterized protein LOC10	0.963	0.851	0.402	5e-30
219363323	224	hypothetical protein [Zea mays] gi|19469	0.973	0.825	0.429	2e-29
326487586	227	predicted protein [Hordeum vulgare subsp	0.847	0.709	0.4	3e-28
125536178	223	hypothetical protein OsI_37886 [Oryza sa	0.968	0.825	0.417	4e-28
108862372	225	WW domain containing protein, expressed	0.968	0.817	0.413	6e-28

>gi|225433764|ref|XP_002271254.1| PREDICTED: uncharacterized protein LOC100251518 [Vitis vinifera] gi|297745164|emb|CBI39156.3| unnamed protein product [Vitis vinifera]

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/200 (60%), Positives = 147/200 (73%), Gaps = 17/200 (8%)

Query: 2   VMELTELSLAPTHCVVVDKSNSSSESE---DNPSRKRKFLSDFSLLKTEPAIQTSVDLQI 58
           +ME  ELSLAP+    VDKS +SS SE   + PS+KRKF SD    +++P IQTSVDLQ+
Sbjct: 27  IMEFPELSLAPSPRHGVDKSTNSSSSESEANYPSKKRKF-SDHLFNRSDPMIQTSVDLQL 85

Query: 59  KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE--NKQKLDLELNISSSSVSNCTSAA 116
           KDPLPLDWE+CLDL+SGRMYY NRK+ +KSW+ P+  N+QKLDLELNI  S++SNC    
Sbjct: 86  KDPLPLDWEQCLDLESGRMYYLNRKTLRKSWNCPKDHNQQKLDLELNI--STLSNCPEKC 143

Query: 117 DDDESNN------KHHLSSASNNMVALACMNCHLLVILSKSSPSCPNCKFVHSLPNQQTQ 170
              +S        KH   S+S+NMVALAC+NCHLLVILSKSSPSCPNCK+VHSLP QQ  
Sbjct: 144 SSFDSQRLQDHSKKHQHCSSSSNMVALACLNCHLLVILSKSSPSCPNCKYVHSLPTQQIP 203

Query: 171 SSSAKVSGTKSMINTLSLLN 190
           +S  K    KS ++TLSLLN
Sbjct: 204 TS--KAPPIKS-LDTLSLLN 220

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131566|ref|XP_002321117.1| predicted protein [Populus trichocarpa] gi|222861890|gb|EEE99432.1| predicted protein [Populus trichocarpa]

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 127/196 (64%), Positives = 151/196 (77%), Gaps = 14/196 (7%)

Query: 3   MELTELSLAPTHCVV--VDKSNSSSESEDNPSRKRKFLSD-FSLLKTEPAIQTSVDLQIK 59
           MELTELSLAP   V+     S+SSSESE+ PSRKRKF SD + LLK  P IQ SVDL +K
Sbjct: 1   MELTELSLAPAQFVLEKSRNSSSSSESENTPSRKRKFFSDQYQLLKNGPPIQASVDLHVK 60

Query: 60  DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENKQKLDLELNISSSSVSNC-----TS 114
           DPLPLDWE+CLDL+SGRMYY NRK+ +KSW+ P+ KQKLDLELN+ SS++ NC     +S
Sbjct: 61  DPLPLDWEQCLDLESGRMYYLNRKTLRKSWNWPK-KQKLDLELNM-SSTIPNCPDECSSS 118

Query: 115 AADDDESNNKHHLSSASNNMVALACMNCHLLVILSKSSPSCPNCKFVHSLPNQQTQSSSA 174
            +  ++SNNK+H SS S NMVALAC+NCHLLVI SKSSPSCPNCK+VHS P    QS   
Sbjct: 119 NSSLEDSNNKNHASSNS-NMVALACLNCHLLVIFSKSSPSCPNCKYVHSFPT--LQSPQR 175

Query: 175 KVSGTKSMINTLSLLN 190
           KVS T+S+ +TLSLLN
Sbjct: 176 KVSPTRSL-STLSLLN 190

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580394|ref|XP_002531024.1| conserved hypothetical protein [Ricinus communis] gi|223529399|gb|EEF31362.1| conserved hypothetical protein [Ricinus communis]

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/216 (56%), Positives = 148/216 (68%), Gaps = 33/216 (15%)

Query: 3   MELTELSLAPT------------HCVVVDKSNSSSESEDNPS--RKRKFLSDFSLLKTE- 47
           MELTELSLAPT              +V   S++SSESE N S  +KRKFLSD  LL+T  
Sbjct: 1   MELTELSLAPTTTTATTATTTKTQFIVEKLSSTSSESECNHSSRKKRKFLSDHHLLRTAT 60

Query: 48  ---PAIQTSVDLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENKQKLDLELNI 104
              P IQ S DL +KDPLPLDWE+CLDL+SGRMYY NRK+ +KSW+ P++ QKLDLELNI
Sbjct: 61  TTGPPIQASFDLHVKDPLPLDWEQCLDLESGRMYYLNRKTLRKSWNWPKD-QKLDLELNI 119

Query: 105 SSSSVSNCTSAADDDESNN----------KHHLSSASNNMVALACMNCHLLVILSKSSPS 154
             S +++CT       +NN          +++ SS S+NMVALAC+NCHLLVILS+SSPS
Sbjct: 120 --SPLTDCTPDHHQQCNNNGSNSVLLEDSRNNFSSPSSNMVALACLNCHLLVILSRSSPS 177

Query: 155 CPNCKFVHSLPNQQTQSSSAKVSGTKSMINTLSLLN 190
           CPNCK+VHSLP    Q    K+S TKS+ NTLSLLN
Sbjct: 178 CPNCKYVHSLPITH-QVLLPKISPTKSL-NTLSLLN 211

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065024|ref|XP_002301635.1| predicted protein [Populus trichocarpa] gi|222843361|gb|EEE80908.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (479), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 111/172 (64%), Positives = 131/172 (76%), Gaps = 7/172 (4%)

Query: 3   MELTELSLAPTHCVVVDKSNSSSESEDNPS-RKRKFLSDFSLLKTEPAIQTSVDLQIKDP 61
           M+LTELSLAPT  V+   +NSSS   +N   RKRKF SD  L K    IQ SVDL +KDP
Sbjct: 1   MKLTELSLAPTQFVLEKSTNSSSSESENNPSRKRKFSSDQYLPKNGSPIQASVDLHVKDP 60

Query: 62  LPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENKQKLDLELNISSSSVSN----CTSAAD 117
           LPLDWE+CLDL+SGRMYY NRK+ +KSW+ P N QKLDLELN+SS+ VSN    C+S+ +
Sbjct: 61  LPLDWEQCLDLESGRMYYLNRKTLRKSWNWPRN-QKLDLELNMSSTVVSNCLDQCSSSNN 119

Query: 118 DDESNNKHHLSSASNNMVALACMNCHLLVILSKSSPSCPNCKFVHSLPNQQT 169
             E++NK H  S S NMVALAC+NCHLLVILSKSSPSCPNCK+VHSLP  Q+
Sbjct: 120 SLEASNKIHAPSNS-NMVALACLNCHLLVILSKSSPSCPNCKYVHSLPILQS 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414877709|tpg|DAA54840.1| TPA: hypothetical protein ZEAMMB73_859049 [Zea mays]

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/193 (43%), Positives = 109/193 (56%), Gaps = 20/193 (10%)

Query: 7   ELSLAPTHCVVVDKSN-----SSSESEDNPSRKRKFLS----DFSLLKTEPAIQTSVDLQ 57
           ELSL P    +          SS ES  +P +KRK  +    D+ + +  PA   S+DLQ
Sbjct: 28  ELSLGPVWPGLATGGGLAAKSSSIESHGSPRKKRKNYTAASWDWEVHQQPPA---SLDLQ 84

Query: 58  IKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENKQKLDLELNISSSSVSNCTSAAD 117
           +  PLPLDWE+CLDLQSGRMYY NRK+ KKSW  P  +   +++LNIS        +A D
Sbjct: 85  LNHPLPLDWEQCLDLQSGRMYYLNRKTLKKSWVRPREQSLNNVDLNIS--------TAPD 136

Query: 118 DDESNNKHHLSSASNNMVALACMNCHLLVILSKSSPSCPNCKFVHSLPNQQTQSSSAKVS 177
           +DE         +  NMVA+ C NCHLLV+L  SSPSCPNCKFV  LP      +  ++ 
Sbjct: 137 EDEPGKPAGTLFSGGNMVAVPCANCHLLVMLCMSSPSCPNCKFVQPLPPSVVPPAYPRLG 196

Query: 178 GTKSMINTLSLLN 190
                + TLSLL+
Sbjct: 197 AAVKPLETLSLLH 209

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357160394|ref|XP_003578750.1| PREDICTED: uncharacterized protein LOC100823520 [Brachypodium distachyon]

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 81/201 (40%), Positives = 119/201 (59%), Gaps = 18/201 (8%)

Query: 3   MEL-TELSLAPTHCVV----VDKSNSSSESEDNPSRKRKFLSDFSLLKTEPAIQTSVDLQ 57
           ME+  ELSL PT   +       + SSS   D  SRK++    +     EP    +++L 
Sbjct: 20  MEMQPELSLGPTWPALGFASAKSTKSSSSESDGTSRKKRKHYTWE----EPVSHPNLELH 75

Query: 58  IKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENKQKLDLELNISSSSVSNCTSAAD 117
           + DPLPLDWE+CLDLQSGRMYY NRK+ K+SW  P+ +Q ++LELN+S++ ++      +
Sbjct: 76  LNDPLPLDWEQCLDLQSGRMYYLNRKTLKRSWIRPK-EQGVNLELNMSTTPMNVGVVDGN 134

Query: 118 DDES--------NNKHHLSSASNNMVALACMNCHLLVILSKSSPSCPNCKFVHSLPNQQT 169
           +  +             +SS+  NM+A+ C NCHLLV+L KSSPSCPNCK+V  L     
Sbjct: 135 NGAAFPTLPQVTERADAVSSSGGNMIAVPCANCHLLVMLCKSSPSCPNCKYVQPLAPAMP 194

Query: 170 QSSSAKVSGTKSMINTLSLLN 190
           Q++  +++     + TLSLL+
Sbjct: 195 QAAHRRLNAAVKPLETLSLLH 215

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219363323|ref|NP_001137040.1| hypothetical protein [Zea mays] gi|194698104|gb|ACF83136.1| unknown [Zea mays] gi|413916772|gb|AFW56704.1| hypothetical protein ZEAMMB73_574320 [Zea mays]

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/205 (42%), Positives = 120/205 (58%), Gaps = 20/205 (9%)

Query: 2   VMELT-ELSLAPTHCVVVDK---SNSSSESEDNPSRKRK--FLSDFSLLKTEPAIQTSVD 55
            MEL  ELSL P           + SSS   D  SRK++  + + +   +  PA   S++
Sbjct: 24  TMELQPELSLGPVWPGFAAGDLAAKSSSSESDGTSRKKRKHYTASWEEPQQPPA---SLE 80

Query: 56  LQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENKQKLDLELNIS-SSSVSNCTS 114
           LQ+ DPLPLDWE+CLDLQSGRMYY NRK+ KKSW  P+  Q ++L+LNIS ++++ NC +
Sbjct: 81  LQLNDPLPLDWEQCLDLQSGRMYYLNRKTLKKSWVRPQ-VQSVNLDLNISTAAAIDNCAA 139

Query: 115 AA-------DDDESNNKHHLSSASNNMVALACMNCHLLVILSKSSPSCPNCKFVHSLPNQ 167
                    D+DE         +  +MVA+ C NCHLLV+L KSSPSCPNCKFV  L   
Sbjct: 140 NGAAAAASDDEDEPRKPAGTLFSGGSMVAVPCANCHLLVMLCKSSPSCPNCKFVQPLAPA 199

Query: 168 QTQSSSA--KVSGTKSMINTLSLLN 190
              ++ A  ++      + TLSLL+
Sbjct: 200 VPPAAVAHWRIDAAVKPLETLSLLH 224

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326487586|dbj|BAK05465.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/180 (40%), Positives = 103/180 (57%), Gaps = 19/180 (10%)

Query: 3   MELT-ELSLAPTHCVVVDKSNSSSESEDNPSRK-------RKFLSDFSLLKTEPAIQTSV 54
           ME+  ELSL P    +   S S   ++ N S         RK    ++  + EP     +
Sbjct: 20  MEMQPELSLGPVWPALGFASASEKNTKQNSSSSSESDGSSRKRRKHYNAWEEEPVSHPHL 79

Query: 55  DLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENKQKLDLELNISSSSVSNCTS 114
           +L + DPLPLDWE+CLDLQSG+MYY NRK+ K+SW+ P+ +Q ++LELN+S++       
Sbjct: 80  ELHLNDPLPLDWEQCLDLQSGKMYYLNRKTLKRSWNRPK-EQGVNLELNMSTTPTKQAVV 138

Query: 115 AADDD----------ESNNKHHLSSASNNMVALACMNCHLLVILSKSSPSCPNCKFVHSL 164
           A D +          ++       +A  NM+A+ C NCHLLV++ KS P+CPNCKFV SL
Sbjct: 139 ADDGNTGATAPATLSQAAATKRGGTAGGNMIAVPCSNCHLLVMMCKSCPTCPNCKFVQSL 198

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125536178|gb|EAY82666.1| hypothetical protein OsI_37886 [Oryza sativa Indica Group]

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/211 (41%), Positives = 114/211 (54%), Gaps = 27/211 (12%)

Query: 3   MEL-TELSLAPT----HCVVVDKSNSSSESEDNPSRKRKFLSDFSLLKTEPAIQTSVDLQ 57
           MEL  ELSL PT      V     ++ S S ++    RK    F+    EP    +++LQ
Sbjct: 17  MELQPELSLGPTWPAPGFVSSTTKSTKSSSSESDGSSRKKRKHFTW--EEPVSHANLELQ 74

Query: 58  IKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENKQKLDLELNISSS--SVSNCTSA 115
           + DPLPLDWE+CLDLQSGRMYY NRK+ KKSW  P+ +Q ++LELNIS++  +V    + 
Sbjct: 75  LNDPLPLDWEQCLDLQSGRMYYLNRKTLKKSWIRPK-EQSVNLELNISTTQPTVVVVPTI 133

Query: 116 ADDDESNNKHHL----------------SSASNNMVALACMNCHLLVILSKSSPSCPNCK 159
            D   +                      S    NMVA+ C+NCHLLV+L KSSPSCPNCK
Sbjct: 134 IDGGSTGAAATPVAVVAEETKKGGTIVSSGPGGNMVAVPCVNCHLLVMLCKSSPSCPNCK 193

Query: 160 FVHSLPNQQTQSSSAKVSGTKSMINTLSLLN 190
           FV  L          K+   K +  TLSLL+
Sbjct: 194 FVQPLAPPPPAMPHRKLDAVKPL-ETLSLLH 223

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108862372|gb|ABA96334.2| WW domain containing protein, expressed [Oryza sativa Japonica Group]

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/213 (41%), Positives = 114/213 (53%), Gaps = 29/213 (13%)

Query: 3   MELT-ELSLAPT----HCVVVDKSNSSSESEDNPSRKRKFLSDFSLLKTEPAIQTSVDLQ 57
           MEL  ELSL PT      V     ++ S S ++    RK    F+    EP    +++LQ
Sbjct: 17  MELQPELSLGPTWPAPGFVSSTTKSTKSSSSESDGSSRKKRKHFTW--EEPVSHANLELQ 74

Query: 58  IKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENKQKLDLELNISSS--SVSNCTSA 115
           + DPLPLDWE+CLDLQSGRMYY NRK+ KKSW  P+ +Q ++LELNIS++  +V    + 
Sbjct: 75  LNDPLPLDWEQCLDLQSGRMYYLNRKTLKKSWIRPK-EQSVNLELNISTTQPTVVVVPTI 133

Query: 116 ADDDESNNKHHL------------------SSASNNMVALACMNCHLLVILSKSSPSCPN 157
            D   +                        S    NMVA+ C+NCHLLV+L KSSPSCPN
Sbjct: 134 IDGGSTGAAATPVAVAVVAEETKKGGTIVSSGPGGNMVAVPCVNCHLLVMLCKSSPSCPN 193

Query: 158 CKFVHSLPNQQTQSSSAKVSGTKSMINTLSLLN 190
           CKFV  L          K+   K +  TLSLL+
Sbjct: 194 CKFVQPLAPPPPALPHRKLDAVKPL-ETLSLLH 225

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
TAIR|locus:2138723	212	AT4G08910 "AT4G08910" [Arabido	0.552	0.495	0.345	1.4e-09
TAIR|locus:2194709	221	AT1G78170 "AT1G78170" [Arabido	0.268	0.230	0.392	3.2e-06
TAIR|locus:2164235	122	AT5G06270 "AT5G06270" [Arabido	0.389	0.606	0.296	5.5e-06
TAIR|locus:2015026	200	AT1G22250 "AT1G22250" [Arabido	0.247	0.235	0.415	1e-05

TAIR|locus:2138723 AT4G08910 "AT4G08910" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 39/113 (34%), Positives = 53/113 (46%)

Query:    53 SVDLQIK-DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENKQKLDLELNIXXXXXXN 111
             S+DL++   P  +D     DL +    Y   +  KK   + E    L LE          
Sbjct:    88 SLDLELNLSPSLIDLNHHHDLSNYNKGYEEDERKKK---MMEKGSVLGLETK---KSMSR 141

Query:   112 CTSAADDDESNNKHHLSSASNN-MVALACMNCHLLVILSKSSPSCPNCKFVHS 163
                  DDD  +    +   S   MVA  CM CH+LV+L K+SP+CPNCKF+HS
Sbjct:   142 VAFDLDDDCCDRGDGVGGRSEEEMVARVCMKCHMLVMLCKASPACPNCKFMHS 194

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2194709 AT1G78170 "AT1G78170" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 20/51 (39%), Positives = 29/51 (56%)

Query:   120 ESNNKHHLSSASNNMVALACMNCHLLVILSKSSPSCPNCKFVHSLPNQQTQ 170
             E  + + +      MV   CM CH+LV+L  S+P CPNCKF+H   +  T+
Sbjct:   159 EGGDDNDVDHKGQEMVTTVCMKCHMLVMLCTSTPVCPNCKFMHPHDHSSTK 209

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2164235 AT5G06270 "AT5G06270" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 24/81 (29%), Positives = 41/81 (50%)

Query:   111 NCTSAA-DDDESNNKHHLSSASNNMVALACMNCHLLVILSKSSPSCPNCK------FVHS 163
             +C S+  + DE + ++  S  + +MV + C  C + V+LS+  P CP CK      F+H 
Sbjct:    42 SCVSSEMNQDEPSVRYSTSPETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHE 101

Query:   164 LPNQQTQSSSAKVSGTKSMIN 184
                    +++A  SG K+  N
Sbjct:   102 NATNANANAAAASSGRKTRRN 122

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015026 AT1G22250 "AT1G22250" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 22/53 (41%), Positives = 30/53 (56%)

Query:   118 DDESNNKHHLSSASNNMVALACMNCHLLVILSKSSPSCPNCKFVHSLPNQQTQ 170
             DD+ N K         M+   CM CH+LV+L KS+  CPNCKF+H   +  T+
Sbjct:   142 DDDDNQK------KQEMITTVCMKCHMLVMLCKSTLVCPNCKFMHHDDHSSTK 188


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.126   0.368    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      190       172   0.00093  108 3  11 23  0.42    32
                                                     31  0.48    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  162 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.57u 0.14s 16.71t   Elapsed:  00:00:01
  Total cpu time:  16.57u 0.14s 16.71t   Elapsed:  00:00:01
  Start:  Sat May 11 05:31:46 2013   End:  Sat May 11 05:31:47 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	190
smart00456	33	smart00456, WW, Domain with 2 conserved Trp (W) re	4e-04
pfam00397	30	pfam00397, WW, WW domain	9e-04

>gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues

 Score = 36.0 bits (84), Expect = 4e-04
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 61 PLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN 94
          PLP  WE   D   GR YY+N ++ +  W  P  
Sbjct: 1  PLPPGWEERKD-PDGRPYYYNHETKETQWEKPRE 33

Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides. Length = 33

>gnl|CDD|215899 pfam00397, WW, WW domain

 Score = 35.2 bits (82), Expect = 9e-04
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 62 LPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
          LP  WE   D   GR YY+N  + +  W  P
Sbjct: 1  LPPGWEERTD-TDGRPYYYNHNTGETQWERP 30

The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	190
PF00397	31	WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp	99.04
smart00456	32	WW Domain with 2 conserved Trp (W) residues. Also	98.84
cd00201	31	WW Two conserved tryptophans domain; also known as	98.69
KOG3259	163	consensus Peptidyl-prolyl cis-trans isomerase [Pos	98.24
KOG1891	271	consensus Proline binding protein WW45 [General fu	97.31
KOG1891	271	consensus Proline binding protein WW45 [General fu	96.63
COG5104	590	PRP40 Splicing factor [RNA processing and modifica	96.34
COG5104	590	PRP40 Splicing factor [RNA processing and modifica	95.41
KOG3209	984	consensus WW domain-containing protein [General fu	93.91
KOG0940	358	consensus Ubiquitin protein ligase RSP5/NEDD4 [Pos	90.35
PRK08351	61	DNA-directed RNA polymerase subunit E''; Validated	89.48
cd00201	31	WW Two conserved tryptophans domain; also known as	87.87
PF00397	31	WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp	86.76
smart00391	77	MBD Methyl-CpG binding domain. Methyl-CpG binding	83.6
cd00122	62	MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and	83.01
PRK06393	64	rpoE DNA-directed RNA polymerase subunit E''; Vali	82.74
KOG3209	984	consensus WW domain-containing protein [General fu	80.37

>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet

Probab=99.04  E-value=1e-10  Score=72.16  Aligned_cols=31  Identities=42%  Similarity=0.999  Sum_probs=29.5

Q ss_pred             CCccchhcccCCCcceEEeecCCCCccccCC
Q 029636           62 LPLDWERCLDLQSGRMYYFNRKSSKKSWSLP   92 (190)
Q Consensus        62 LPsgWEq~LDlkSG~iYY~N~~T~~ssw~dP   92 (190)
                      ||.||+++.|.++|++||+|..|++++|++|
T Consensus         1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P   31 (31)
T PF00397_consen    1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP   31 (31)
T ss_dssp             SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred             CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence            7999999998768999999999999999998

This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....

>smart00456 WW Domain with 2 conserved Trp (W) residues

Probab=98.84  E-value=2e-09  Score=65.36  Aligned_cols=31  Identities=39%  Similarity=0.916  Sum_probs=29.9

Q ss_pred             CCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636           62 LPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE   93 (190)
Q Consensus        62 LPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr   93 (190)
                      ||.||+++.|.+ |++||+|+.|++++|++|+
T Consensus         1 lp~gW~~~~~~~-g~~yy~n~~t~~s~W~~P~   31 (32)
T smart00456        1 LPPGWEERKDPD-GRPYYYNHETKETQWEKPR   31 (32)
T ss_pred             CCCCCEEEECCC-CCEEEEECCCCCEEcCCCC
Confidence            799999999998 9999999999999999997

Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.

>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs

Probab=98.69  E-value=1.2e-08  Score=61.02  Aligned_cols=30  Identities=37%  Similarity=0.936  Sum_probs=28.8

Q ss_pred             CccchhcccCCCcceEEeecCCCCccccCCC
Q 029636           63 PLDWERCLDLQSGRMYYFNRKSSKKSWSLPE   93 (190)
Q Consensus        63 PsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr   93 (190)
                      |.+|+++.|.. |++||+|+.|++++|++|+
T Consensus         1 p~~W~~~~~~~-g~~yy~n~~t~~s~W~~P~   30 (31)
T cd00201           1 PPGWEERWDPD-GRVYYYNHNTKETQWEDPR   30 (31)
T ss_pred             CCCCEEEECCC-CCEEEEECCCCCEeCCCCC
Confidence            78999999998 9999999999999999997

>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=4.5e-07  Score=75.33  Aligned_cols=36  Identities=36%  Similarity=0.880  Sum_probs=33.9

Q ss_pred             CCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      +..||.+||++.+..+|+.||||+.|++++|++|.+
T Consensus         4 ~~~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~   39 (163)
T KOG3259|consen    4 EEKLPPGWEKRMSRSSGRPYYFNTETNESQWERPSG   39 (163)
T ss_pred             cccCCchhheeccccCCCcceeccccchhhccCCCc
Confidence            357999999999999999999999999999999995

>KOG1891 consensus Proline binding protein WW45 [General function prediction only]

Probab=97.31  E-value=0.00018  Score=63.70  Aligned_cols=64  Identities=25%  Similarity=0.482  Sum_probs=52.0

Q ss_pred             CCCCcccCC----------CCcCCceeeeccc---ccccCCCcccccccccCCCCCccchhcccCCCcceEEeecCCCCc
Q 029636           21 SNSSSESED----------NPSRKRKFLSDFS---LLKTEPAIQTSVDLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKK   87 (190)
Q Consensus        21 ~~ssse~~~----------~~~~~R~~~~~~~---t~W~~P~~~~~iEL~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~s   87 (190)
                      +|+-++|++          -...+||||.||.   |-|..|-...        -||.||++..|..-| +||+|..++.+
T Consensus        83 ~s~~~~sedlPLPpgWav~~T~~grkYYIDHn~~tTHW~HPlerE--------gLppGW~rv~s~e~G-tyY~~~~~k~t  153 (271)
T KOG1891|consen   83 RSSCDCSEDLPLPPGWAVEFTTEGRKYYIDHNNRTTHWVHPLERE--------GLPPGWKRVFSPEKG-TYYYHEEMKRT  153 (271)
T ss_pred             cccCCCcccCCCCCCcceeeEecCceeEeecCCCcccccChhhhc--------cCCcchhhccccccc-eeeeecccchh
Confidence            355556664          3568999999887   8999994444        489999999998855 78899999999


Q ss_pred             cccCCC
Q 029636           88 SWSLPE   93 (190)
Q Consensus        88 sw~dPr   93 (190)
                      ++++|+
T Consensus       154 Qy~HPc  159 (271)
T KOG1891|consen  154 QYEHPC  159 (271)
T ss_pred             hhcCCC
Confidence            999998

>KOG1891 consensus Proline binding protein WW45 [General function prediction only]

Probab=96.63  E-value=0.0022  Score=56.96  Aligned_cols=40  Identities=28%  Similarity=0.646  Sum_probs=35.0

Q ss_pred             cCCCCCccchhcccCCCcceEEeecCCCCccccCCCccccc
Q 029636           58 IKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENKQKL   98 (190)
Q Consensus        58 l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~~~~L   98 (190)
                      .++|||.||---.+.. |+.||++|++.++-|.+|-+..+|
T Consensus        90 edlPLPpgWav~~T~~-grkYYIDHn~~tTHW~HPlerEgL  129 (271)
T KOG1891|consen   90 EDLPLPPGWAVEFTTE-GRKYYIDHNNRTTHWVHPLEREGL  129 (271)
T ss_pred             ccCCCCCCcceeeEec-CceeEeecCCCcccccChhhhccC
Confidence            3799999998877776 999999999999999999975554

>COG5104 PRP40 Splicing factor [RNA processing and modification]

Probab=96.34  E-value=0.0017  Score=62.27  Aligned_cols=61  Identities=16%  Similarity=0.460  Sum_probs=42.5

Q ss_pred             CcCCceeeeccc---ccccCCCccc-ccccccCCCCCccchhcccCCCcceEEeecCCCCccccCCCcc
Q 029636           31 PSRKRKFLSDFS---LLKTEPAIQT-SVDLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENK   95 (190)
Q Consensus        31 ~~~~R~~~~~~~---t~W~~P~~~~-~iEL~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~~   95 (190)
                      .-.+|.||-|-.   .+|+.|.... ..|+++.   =.+|..|-+-. |++||+|.+|.++.|+-|.+.
T Consensus        22 ~~dgRiYYYN~~T~kS~weKPkell~~~e~~l~---~~~Wke~~Tad-GkvyyyN~~TREs~W~iP~e~   86 (590)
T COG5104          22 APDGRIYYYNKRTGKSSWEKPKELLKGSEEDLD---VDPWKECRTAD-GKVYYYNSITRESRWKIPPER   86 (590)
T ss_pred             CCCCceEEEecccccccccChHHHhcchHhhhc---hhhHHHHhhcC-CceEEecCccccccccCChhh
Confidence            345666665544   7899993222 2223332   12599999754 999999999999999999963

>COG5104 PRP40 Splicing factor [RNA processing and modification]

Probab=95.41  E-value=0.007  Score=58.23  Aligned_cols=30  Identities=37%  Similarity=0.962  Sum_probs=27.1

Q ss_pred             ccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           64 LDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        64 sgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      ++|+..-|.. |+|||+|..|++++|+.|.+
T Consensus        15 s~w~e~k~~d-gRiYYYN~~T~kS~weKPke   44 (590)
T COG5104          15 SEWEELKAPD-GRIYYYNKRTGKSSWEKPKE   44 (590)
T ss_pred             HHHHHhhCCC-CceEEEecccccccccChHH
Confidence            4699998875 99999999999999999974

>KOG3209 consensus WW domain-containing protein [General function prediction only]

Probab=93.91  E-value=0.033  Score=56.32  Aligned_cols=34  Identities=32%  Similarity=0.786  Sum_probs=31.4

Q ss_pred             CCCCCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636           59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE   93 (190)
Q Consensus        59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr   93 (190)
                      .-|||..||....-+ |++||++++|..++|-|||
T Consensus       220 ~gplp~nwemayte~-gevyfiDhntkttswLdpr  253 (984)
T KOG3209|consen  220 LGPLPHNWEMAYTEQ-GEVYFIDHNTKTTSWLDPR  253 (984)
T ss_pred             cCCCCccceEeEeec-CeeEeeecccccceecChh
Confidence            356999999999877 9999999999999999999

>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones]

Probab=90.35  E-value=0.19  Score=46.54  Aligned_cols=58  Identities=12%  Similarity=0.076  Sum_probs=42.2

Q ss_pred             ceeeecc----cccccCCCccccccccc--------CCCCCccchhcccCCCcceEEeecCCCCccccCCCcc
Q 029636           35 RKFLSDF----SLLKTEPAIQTSVDLQI--------KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENK   95 (190)
Q Consensus        35 R~~~~~~----~t~W~~P~~~~~iEL~l--------~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~~   95 (190)
                      +.||.+|    +|+|.+|.+..+-+ |+        .+.|| +||++.|- +|+.||+|+.-++++|-+|++.
T Consensus        77 ~~~~~~~~~~~~tlq~~P~sg~~p~-~l~~~~~vg~~~~l~-~~h~~~~~-~g~r~F~~~i~~ktt~ldd~e~  146 (358)
T KOG0940|consen   77 WYGLFQHSRKDYTLWLNPRSGVNPG-HLTYFRFVGGVLALA-GWHMRFTD-TGQRPFYKHILKKTTTLDDREA  146 (358)
T ss_pred             ceeeeeecccccccccCCccCCCCC-ccccccccccccccc-ceeeEecC-CCceehhhhhhcCccccCchhh
Confidence            5555533    58999997663322 22        23444 79999986 4899999999999999999953

>PRK08351 DNA-directed RNA polymerase subunit E''; Validated

Probab=89.48  E-value=0.16  Score=36.61  Aligned_cols=25  Identities=32%  Similarity=0.794  Sum_probs=19.7

Q ss_pred             eEEeeCccceeeeeecCCCCCCCCCCccc
Q 029636          134 MVALACMNCHLLVILSKSSPSCPNCKFVH  162 (190)
Q Consensus       134 mv~~gC~~Clmyvm~~k~~p~CP~Ck~~v  162 (190)
                      |..-+|.+|+..+    ....||+|.+.-
T Consensus         1 M~~kAC~~C~~i~----~~~~CP~Cgs~~   25 (61)
T PRK08351          1 MTEKACRHCHYIT----TEDRCPVCGSRD   25 (61)
T ss_pred             CchhhhhhCCccc----CCCcCCCCcCCc
Confidence            4456999999877    455899999965

>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs

Probab=87.87  E-value=0.4  Score=28.07  Aligned_cols=16  Identities=13%  Similarity=0.237  Sum_probs=13.3

Q ss_pred             Cceeeeccc---ccccCCC
Q 029636           34 KRKFLSDFS---LLKTEPA   49 (190)
Q Consensus        34 ~R~~~~~~~---t~W~~P~   49 (190)
                      +|.||.|+.   ++|+.|.
T Consensus        12 g~~yy~n~~t~~s~W~~P~   30 (31)
T cd00201          12 GRVYYYNHNTKETQWEDPR   30 (31)
T ss_pred             CCEEEEECCCCCEeCCCCC
Confidence            788888766   9999984

>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet

Probab=86.76  E-value=0.41  Score=29.19  Aligned_cols=16  Identities=13%  Similarity=0.189  Sum_probs=14.0

Q ss_pred             CCceeeeccc---ccccCC
Q 029636           33 RKRKFLSDFS---LLKTEP   48 (190)
Q Consensus        33 ~~R~~~~~~~---t~W~~P   48 (190)
                      .+|.||.|+.   ++|++|
T Consensus        13 ~g~~YY~N~~t~~s~W~~P   31 (31)
T PF00397_consen   13 SGRPYYYNHETGESQWERP   31 (31)
T ss_dssp             TSEEEEEETTTTEEESSST
T ss_pred             CCCEEEEeCCCCCEEeCCC
Confidence            6899999887   899987

This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....

>smart00391 MBD Methyl-CpG binding domain

Probab=83.60  E-value=0.65  Score=34.13  Aligned_cols=25  Identities=28%  Similarity=0.600  Sum_probs=18.9

Q ss_pred             cCCCCCccchhcccC-------CCcceEEeec
Q 029636           58 IKDPLPLDWERCLDL-------QSGRMYYFNR   82 (190)
Q Consensus        58 l~~PLPsgWEq~LDl-------kSG~iYY~N~   82 (190)
                      ++.|||.||+..+-+       ..+.|||+..
T Consensus         4 ~~~Plp~GW~R~~~~r~~g~~~~~~dV~Y~sP   35 (77)
T smart00391        4 LRLPLPCGWRRETKQRKSGRSAGKFDVYYISP   35 (77)
T ss_pred             ccCCCCCCcEEEEEEecCCCCCCcccEEEECC
Confidence            467899999987752       2378999964

Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain

>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD)

Probab=83.01  E-value=1  Score=31.33  Aligned_cols=26  Identities=38%  Similarity=0.936  Sum_probs=20.0

Q ss_pred             cCCCCCccchhcccC------CCcceEEeecC
Q 029636           58 IKDPLPLDWERCLDL------QSGRMYYFNRK   83 (190)
Q Consensus        58 l~~PLPsgWEq~LDl------kSG~iYY~N~~   83 (190)
                      +..|||.||+..+-+      ..+.|||+...
T Consensus         2 l~~P~p~GW~R~~~~r~~g~~~k~dv~Y~sP~   33 (62)
T cd00122           2 LRDPLPPGWKRELVIRKSGSAGKGDVYYYSPC   33 (62)
T ss_pred             CCCCCCCCeEEEEEEcCCCCCCcceEEEECCC
Confidence            568999999998764      23678999765

The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.

>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated

Probab=82.74  E-value=0.46  Score=34.58  Aligned_cols=24  Identities=25%  Similarity=0.438  Sum_probs=19.6

Q ss_pred             EEeeCccceeeeeecCCCCCCCCCCccc
Q 029636          135 VALACMNCHLLVILSKSSPSCPNCKFVH  162 (190)
Q Consensus       135 v~~gC~~Clmyvm~~k~~p~CP~Ck~~v  162 (190)
                      ...+|.+|+..+    .+..||.|.+.-
T Consensus         4 ~~~AC~~C~~i~----~~~~Cp~Cgs~~   27 (64)
T PRK06393          4 QYRACKKCKRLT----PEKTCPVHGDEK   27 (64)
T ss_pred             hhhhHhhCCccc----CCCcCCCCCCCc
Confidence            456899999888    566999999964

>KOG3209 consensus WW domain-containing protein [General function prediction only]

Probab=80.37  E-value=1.2  Score=45.55  Aligned_cols=62  Identities=18%  Similarity=0.337  Sum_probs=43.4

Q ss_pred             CcCCceeeeccc---ccccCCCcccccccc---cCCCCCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636           31 PSRKRKFLSDFS---LLKTEPAIQTSVDLQ---IKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE   93 (190)
Q Consensus        31 ~~~~R~~~~~~~---t~W~~P~~~~~iEL~---l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr   93 (190)
                      ...+-.||-||.   |+|=+|+-.-...-+   -+.-||.|||+--|+. =.+||+.|....+.++.|-
T Consensus       232 te~gevyfiDhntkttswLdprl~kkaK~~eeckd~elPygWeki~dpi-Yg~yyvdHiN~~sq~enpv  299 (984)
T KOG3209|consen  232 TEQGEVYFIDHNTKTTSWLDPRLTKKAKPPEECKDQELPYGWEKIEDPI-YGTYYVDHINRKSQYENPV  299 (984)
T ss_pred             eecCeeEeeecccccceecChhhhcccCChhhcccccccccccccCCcc-ceeEEecccchhhhhccch
Confidence            445668889998   899999632222111   2345999999999998 4567788887777666665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	190
2kxq_A	90	E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG	5e-06
2kxq_A	90	E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG	5e-04
2law_A	38	Yorkie homolog; YAP, SMAD1, CDK, signal transducti	9e-06
2djy_A	42	SMAD ubiquitination regulatory factor 2; beta shee	2e-05
1wr3_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	2e-05
1tk7_A	88	CG4244-PB; WW domain, notch, signaling protein; NM	2e-05
1o6w_A	75	PRP40, PRE-mRNA processing protein PRP40; WW domai	4e-05
1wr4_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	5e-05
1wmv_A	54	WWOX, WW domain containing oxidoreductase; all-bet	6e-05
1i5h_W	50	Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains,	7e-05
2jxw_A	75	WW domain-binding protein 4; WW domain containing	7e-05
2kyk_A	39	E3 ubiquitin-protein ligase itchy homolog; LMP2A,	7e-05
1ymz_A	43	CC45; artificial protein, computational design, un	8e-05
2yse_A	60	Membrane-associated guanylate kinase, WW and PDZ d	1e-04
1wr7_A	41	NEDD4-2; all-beta, ligase; NMR {Mus musculus} Leng	1e-04
2l4j_A	46	YES-associated protein 2 (YAP2); WW domain, medaka	1e-04
2l5f_A	92	PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA	2e-04
2ysf_A	40	E3 ubiquitin-protein ligase itchy homolog; AIP4, N	2e-04
2ysd_A	57	Membrane-associated guanylate kinase, WW and PDZ d	2e-04
2dmv_A	43	Itchy homolog E3 ubiquitin protein ligase; WW doma	2e-04
2ysh_A	40	GAS-7, growth-arrest-specific protein 7; WW domain	2e-04
2kpz_A	49	E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV	2e-04
1jmq_A	46	YAP65, 65 kDa YES-associated protein; polyproline	3e-04
2jmf_A	53	E3 ubiquitin-protein ligase suppressor of deltex;	3e-04
2ez5_W	46	Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma	5e-04
2ysg_A	40	Syntaxin-binding protein 4; synip, STXBP4, WW doma	5e-04
2jx8_A	52	Hpcif1, phosphorylated CTD-interacting factor 1; p	6e-04
2ysb_A	49	Salvador homolog 1 protein; WW domain, structural	6e-04
2jv4_A	54	Peptidyl-prolyl CIS/trans isomerase; ppiase domain	7e-04

>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Length = 90

 Score = 42.2 bits (99), Expect = 5e-06
 Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENKQKLD 99
            LP  +E+    Q G++Y+ + ++   +W  P   + L 
Sbjct: 8  PDLPEGYEQRTT-QQGQVYFLHTQTGVSTWHDPRVPRDLS 46

>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Length = 90

 Score = 36.8 bits (85), Expect = 5e-04
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
           PLP  WE      +GR+Y+ +  +    ++ P
Sbjct: 54 GPLPPGWEIRNT-ATGRVYFVDHNNRTTQFTDP 85

>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens} Length = 38

 Score = 40.2 bits (95), Expect = 9e-06
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
           PLP  WE+ +  Q G +YY N K+   SW  P
Sbjct: 5  GPLPDGWEQAMT-QDGEIYYINHKNKTTSWLDP 36

>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A Length = 42

 Score = 39.6 bits (93), Expect = 2e-05
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
           PLP  WE      +GR+Y+ +  +    ++ P
Sbjct: 6  GPLPPGWEIRNT-ATGRVYFVDHNNRTTQFTDP 37

>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} Length = 36

 Score = 39.4 bits (93), Expect = 2e-05
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
           PLP  WE  +D   GR YY N  +    W  P
Sbjct: 3  PPLPPGWEEKVD-NLGRTYYVNHNNRSTQWHRP 34

>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Length = 88

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENKQ 96
           PLP  WE+ +     R+Y+ N K+    W  P  + 
Sbjct: 11 GPLPDGWEKKIQ-SDNRVYFVNHKNRTTQWEDPRTQG 46

>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Length = 75

 Score = 39.5 bits (92), Expect = 4e-05
 Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 57 QIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENKQK 97
          +        W+       G++YY+N  + + SW++P  ++K
Sbjct: 36 EELLLRENGWKAAKT-ADGKVYYYNPTTRETSWTIPAFEKK 75

>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* Length = 36

 Score = 37.9 bits (89), Expect = 5e-05
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
            LP  WE   D   GR YY N  +   +W+ P
Sbjct: 3  PGLPSGWEERKD-AKGRTYYVNHNNRTTTWTRP 34

>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens} Length = 54

 Score = 38.3 bits (89), Expect = 6e-05
 Identities = 7/36 (19%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 57 QIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
          ++   LP  WE+  D ++G++++ +  + + ++  P
Sbjct: 7  RVAGDLPYGWEQETD-ENGQVFFVDHINKRTTYLDP 41

>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A* Length = 50

 Score = 38.0 bits (89), Expect = 7e-05
 Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
           PLP  WE       GR+++ N    K  W  P
Sbjct: 10 GPLPPGWEERTH-TDGRVFFINHNIKKTQWEDP 41

>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Length = 75

 Score = 38.9 bits (90), Expect = 7e-05
 Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 1/38 (2%)

Query: 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENKQK 97
          DP    W   +    G  YY++  S    W  PE  Q 
Sbjct: 1  DPSKGRWVEGIT-SEGYHYYYDLISGASQWEKPEGFQG 37

>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} Length = 39

 Score = 37.9 bits (89), Expect = 7e-05
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 61 PLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
          PLP  WER +D   GR+YY +  +   +W  P
Sbjct: 6  PLPPGWERRVD-NMGRIYYVDHFTRTTTWQRP 36

>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 Length = 43

 Score = 37.6 bits (88), Expect = 8e-05
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
           PLP  WER  D   G++YYFN ++   +W  P
Sbjct: 7  MPLPPGWERRTD-VEGKVYYFNVRTLTTTWERP 38

>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 60

 Score = 38.0 bits (88), Expect = 1e-04
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 60  DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENKQKLDLELNISSSS 108
             LP  WE+  D     +YY +  + K  +  P  + K   +L    SS
Sbjct: 12  LELPAGWEKIED-PVYGIYYVDHINRKTQYENPVLEAKRKKQLESGPSS 59

>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} Length = 41

 Score = 37.5 bits (88), Expect = 1e-04
 Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
            LP  WE  +   +GR ++ +  +   +W  P
Sbjct: 7  SFLPPGWEMRIA-PNGRPFFIDHNTKTTTWEDP 38

>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes} Length = 46

 Score = 37.3 bits (87), Expect = 1e-04
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
           PLP  WE+ +    G +YY N K+   SW  P
Sbjct: 10 GPLPEGWEQAIT-PEGEIYYINHKNKTTSWLDP 41

>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Length = 92

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE 93
                W        GR YY+N ++ + +W  P+
Sbjct: 10 SGAKSMWTEHKS-PDGRTYYYNTETKQSTWEKPD 42

>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 36.8 bits (86), Expect = 2e-04
 Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 1/33 (3%)

Query: 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
            LP  WE       G  Y+ +      ++  P
Sbjct: 6  SGLPEGWEMRFT-VDGIPYFVDHNRRTTTYIDP 37

>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 57

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
           PLP +WE     ++G +Y+ +  +   SW  P
Sbjct: 13 GPLPENWEMAYT-ENGEVYFIDHNTKTTSWLDP 44

>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 43

 Score = 36.8 bits (86), Expect = 2e-04
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
            LP  WE+ +D Q GR+YY +    + +W  P
Sbjct: 6  SGLPPGWEQRVD-QHGRVYYVDHVEKRTTWDRP 37

>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 36.5 bits (85), Expect = 2e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
            LP  W+  L    GR YY N  +++ +W  P
Sbjct: 6  SGLPPGWQSYLS-PQGRRYYVNTTTNETTWERP 37

>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A* Length = 49

 Score = 36.5 bits (85), Expect = 2e-04
 Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
            LP  WE      +GR ++ +  +   +W  P
Sbjct: 11 GFLPKGWEVRHA-PNGRPFFIDHNTKTTTWEDP 42

>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A* Length = 46

 Score = 36.1 bits (84), Expect = 3e-04
 Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
           PLP  WE      SG+ Y+ N      +W  P
Sbjct: 7  VPLPAGWEMAKT-SSGQRYFKNHIDQTTTWQDP 38

>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A Length = 53

 Score = 36.2 bits (84), Expect = 3e-04
 Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
           PLP  WE      +G  ++ +  + + ++  P
Sbjct: 17 GPLPPGWEIRYT-AAGERFFVDHNTRRTTFEDP 48

>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster} Length = 46

 Score = 35.7 bits (83), Expect = 5e-04
 Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENKQ 96
          +PLP  W   +   +GR ++ +  S + +W  P N +
Sbjct: 9  EPLPPRWSMQVA-PNGRTFFIDHASRRTTWIDPRNGR 44

>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 35.3 bits (82), Expect = 5e-04
 Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 1/33 (3%)

Query: 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
            LP  WE       G  Y+ N  +   SW  P
Sbjct: 6  SGLPYGWEEAYT-ADGIKYFINHVTQTTSWIHP 37

>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens} Length = 52

 Score = 35.8 bits (82), Expect = 6e-04
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENKQK 97
          ++ +   WE+C   +  R YYFNR +++  W +P   Q 
Sbjct: 8  EELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLGQH 46

>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 Length = 49

 Score = 35.4 bits (82), Expect = 6e-04
 Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 52 TSVDLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
          +S       PLP  W        GR YY +  ++   WS P
Sbjct: 2  SSGSSGEDLPLPPGWSVDWT-MRGRKYYIDHNTNTTHWSHP 41

>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans} Length = 54

 Score = 35.6 bits (82), Expect = 7e-04
 Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 2/40 (5%)

Query: 62 LPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE--NKQKLD 99
          LP  WE          YYFN  + +  W  P   + + L 
Sbjct: 8  LPAGWEVRHSNSKNLPYYFNPATRESRWEPPADTDMETLK 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	190
2kxq_A	90	E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG	99.49
1tk7_A	88	CG4244-PB; WW domain, notch, signaling protein; NM	99.49
2dwv_A	49	Salvador homolog 1 protein; WW domain, dimer, stru	99.33
2law_A	38	Yorkie homolog; YAP, SMAD1, CDK, signal transducti	99.33
2ysf_A	40	E3 ubiquitin-protein ligase itchy homolog; AIP4, N	99.26
1wr3_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	99.25
1wr7_A	41	NEDD4-2; all-beta, ligase; NMR {Mus musculus}	99.25
2zaj_A	49	Membrane-associated guanylate kinase, WW and PDZ d	99.24
1i5h_W	50	Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains,	99.24
2ysg_A	40	Syntaxin-binding protein 4; synip, STXBP4, WW doma	99.24
1wr4_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	99.24
2kyk_A	39	E3 ubiquitin-protein ligase itchy homolog; LMP2A,	99.23
2l4j_A	46	YES-associated protein 2 (YAP2); WW domain, medaka	99.23
2djy_A	42	SMAD ubiquitination regulatory factor 2; beta shee	99.21
2ez5_W	46	Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma	99.2
1e0m_A	37	Wwprototype; SH3 prototype, protein design, de nov	99.2
1o6w_A	75	PRP40, PRE-mRNA processing protein PRP40; WW domai	99.2
1ymz_A	43	CC45; artificial protein, computational design, un	99.19
2jmf_A	53	E3 ubiquitin-protein ligase suppressor of deltex;	99.19
2dmv_A	43	Itchy homolog E3 ubiquitin protein ligase; WW doma	99.19
2kpz_A	49	E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV	99.19
2yse_A	60	Membrane-associated guanylate kinase, WW and PDZ d	99.17
2ysd_A	57	Membrane-associated guanylate kinase, WW and PDZ d	99.17
2jxw_A	75	WW domain-binding protein 4; WW domain containing	99.15
2ysb_A	49	Salvador homolog 1 protein; WW domain, structural	99.14
2ysh_A	40	GAS-7, growth-arrest-specific protein 7; WW domain	99.12
1wmv_A	54	WWOX, WW domain containing oxidoreductase; all-bet	99.11
2l5f_A	92	PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA	99.05
2jv4_A	54	Peptidyl-prolyl CIS/trans isomerase; ppiase domain	99.05
3l4h_A	109	E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d	99.0
1jmq_A	46	YAP65, 65 kDa YES-associated protein; polyproline	98.98
2ho2_A	38	Fe65 protein, amyloid beta A4 protein-binding fami	98.98
2ysc_A	39	Amyloid beta A4 precursor protein-binding family B	98.93
1tk7_A	88	CG4244-PB; WW domain, notch, signaling protein; NM	98.84
2jx8_A	52	Hpcif1, phosphorylated CTD-interacting factor 1; p	98.79
2kxq_A	90	E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG	98.78
2e45_A	55	Fe65 protein, amyloid beta A4 precursor protein-bi	98.75
3tc5_A	166	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	98.64
2ysi_A	40	Transcription elongation regulator 1; Ca150, FBP28	98.55
2l5f_A	92	PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA	98.52
1e0n_A	27	Hypothetical protein; YJQ8WW domain, WW domain, sa	98.44
1ywi_A	41	Formin-binding protein 3; WW domain, class II, pro	98.38
1e0l_A	37	Formin binding protein; SH3 domain, WW domain, FBP	98.33
1eg3_A	261	Dystrophin; EF-hand like domain, WW domain, struct	98.32
3olm_A	429	E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S	98.25
1o6w_A	75	PRP40, PRE-mRNA processing protein PRP40; WW domai	98.11
2jxw_A	75	WW domain-binding protein 4; WW domain containing	97.95
1yw5_A	177	Peptidyl prolyl CIS/trans isomerase; WW-domain, pp	97.51
2dk1_A	50	WW domain-binding protein 4; WBP-4, formin- bindin	97.48
2dk7_A	73	Transcription elongation regulator 1; structural g	96.3
2ysd_A	57	Membrane-associated guanylate kinase, WW and PDZ d	96.13
2djy_A	42	SMAD ubiquitination regulatory factor 2; beta shee	94.32
2ez5_W	46	Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma	94.07
2zaj_A	49	Membrane-associated guanylate kinase, WW and PDZ d	93.87
2law_A	38	Yorkie homolog; YAP, SMAD1, CDK, signal transducti	93.8
2ysf_A	40	E3 ubiquitin-protein ligase itchy homolog; AIP4, N	93.8
2ysg_A	40	Syntaxin-binding protein 4; synip, STXBP4, WW doma	93.76
2kpz_A	49	E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV	93.7
2dmv_A	43	Itchy homolog E3 ubiquitin protein ligase; WW doma	93.69
1wmv_A	54	WWOX, WW domain containing oxidoreductase; all-bet	93.62
1wr3_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	93.56
1i5h_W	50	Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains,	93.55
2kyk_A	39	E3 ubiquitin-protein ligase itchy homolog; LMP2A,	93.4
2jmf_A	53	E3 ubiquitin-protein ligase suppressor of deltex;	93.32
1wr4_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	93.04
2ysb_A	49	Salvador homolog 1 protein; WW domain, structural	92.88
2dwv_A	49	Salvador homolog 1 protein; WW domain, dimer, stru	92.85
1wr7_A	41	NEDD4-2; all-beta, ligase; NMR {Mus musculus}	92.83
2l4j_A	46	YES-associated protein 2 (YAP2); WW domain, medaka	92.79
2yse_A	60	Membrane-associated guanylate kinase, WW and PDZ d	92.76
1e0m_A	37	Wwprototype; SH3 prototype, protein design, de nov	92.42
2jv4_A	54	Peptidyl-prolyl CIS/trans isomerase; ppiase domain	92.23
2ysh_A	40	GAS-7, growth-arrest-specific protein 7; WW domain	91.64
1ymz_A	43	CC45; artificial protein, computational design, un	90.84
1jmq_A	46	YAP65, 65 kDa YES-associated protein; polyproline	90.28
3c2i_A	97	Methyl-CPG-binding protein 2; water mediated recog	88.82
2jx8_A	52	Hpcif1, phosphorylated CTD-interacting factor 1; p	85.52
3l4h_A	109	E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d	85.5
1ryq_A	69	DNA-directed RNA polymerase, subunit E''; structur	84.44
3p8b_A	81	DNA-directed RNA polymerase, subunit E''; transcri	83.3
3tc5_A	166	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	82.88
2ho2_A	38	Fe65 protein, amyloid beta A4 protein-binding fami	80.51

>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*

Probab=99.49  E-value=1.8e-14  Score=105.89  Aligned_cols=62  Identities=16%  Similarity=0.400  Sum_probs=51.4

Q ss_pred             cCCceeeeccc---ccccCCCccccc---ccccCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           32 SRKRKFLSDFS---LLKTEPAIQTSV---DLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        32 ~~~R~~~~~~~---t~W~~P~~~~~i---EL~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      ..+|.||.||.   |+|++|.....+   ......+||.|||++.| .+|++||+|++|++++|++|+.
T Consensus        20 ~~Gr~YY~n~~t~~t~W~~P~~~~~~~~~~~~~~~~LP~gWe~~~~-~~G~~Yy~n~~t~~t~w~~Pr~   87 (90)
T 2kxq_A           20 QQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIRNT-ATGRVYFVDHNNRTTQFTDPRL   87 (90)
T ss_dssp             TTTEEEEEETTTTEEESSCSSSCSSSCSCCGGGTCCCCSSCCEEEC-TTSCEEEEETTTTEEESSCTTT
T ss_pred             CCCCEEEEECCCCeEeeecccccccccccCcccccccCCCceEEEC-CCCCEEEEECCCCcEecCCCCc
Confidence            47899999998   999999755432   22234689999999999 5699999999999999999994

>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1

Probab=99.49  E-value=1.1e-14  Score=106.72  Aligned_cols=61  Identities=21%  Similarity=0.469  Sum_probs=51.2

Q ss_pred             cCCceeeeccc---ccccCCCcccc-cccccCCCCCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636           32 SRKRKFLSDFS---LLKTEPAIQTS-VDLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE   93 (190)
Q Consensus        32 ~~~R~~~~~~~---t~W~~P~~~~~-iEL~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr   93 (190)
                      ..+|.||.||.   |+|++|..... +++....+||.|||++.|. +|++||+|++|++++|++||
T Consensus        23 ~~Gr~Yy~n~~t~~t~W~~P~~~~~~~~~~~~~~LP~gWe~~~~~-~G~~Yy~nh~t~~ttw~~Pr   87 (88)
T 1tk7_A           23 SDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEIRYTA-AGERFFVDHNTRRTTFEDPR   87 (88)
T ss_dssp             TTTEEEEEETTTTEEEEESCCCTTTCCHHHHSCSSCSSCEEEEET-TTEEEEEETTTTEEESSSSC
T ss_pred             CCCCEEEEECCCCCeEeecccccccccccccccccCCceEEEECC-CCCEEEEECCCCcEeCCCCC
Confidence            46899999988   89999965432 1233467899999999995 69999999999999999998

>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.33  E-value=5.5e-13  Score=89.55  Aligned_cols=44  Identities=23%  Similarity=0.434  Sum_probs=39.7

Q ss_pred             cccccCCCcccccccccCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           42 SLLKTEPAIQTSVDLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        42 ~t~W~~P~~~~~iEL~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      +|+|++|..        ..+||.|||++.|. .|++||+|++|++++|++|+.
T Consensus         2 tt~W~~P~~--------~~~LP~GWe~~~d~-~g~~YYvnh~t~~T~We~P~~   45 (49)
T 2dwv_A            2 SSGSSGPLE--------REGLPPGWERVESS-EFGTYYVDHTNKRAQYRHPSG   45 (49)
T ss_dssp             CSSSCCSCC--------SSCCCTTEEEEEET-TTEEEEEETTTTEEESSCCCC
T ss_pred             eecCcCCCC--------CCCCCcCcEEEECC-CCCEEEEECCCCCEeccCcCC
Confidence            589999964        47899999999997 699999999999999999984

>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}

Probab=99.33  E-value=4.1e-13  Score=85.31  Aligned_cols=34  Identities=41%  Similarity=0.937  Sum_probs=31.4

Q ss_pred             CCCCCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636           59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE   93 (190)
Q Consensus        59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr   93 (190)
                      +.+||.|||++.| .+|++||+|++|++++|+|||
T Consensus         4 ~~~LP~gWe~~~~-~~G~~Yy~nh~t~~ttW~~Pr   37 (38)
T 2law_A            4 EGPLPDGWEQAMT-QDGEIYYINHKNKTTSWLDPR   37 (38)
T ss_dssp             -CCCSSSCCEEEE-TTTEEEEEETTTTEEESSCTT
T ss_pred             cCCCCCCcEEEEC-CCCCEEEEECCCCCEeCCCCC
Confidence            4689999999999 679999999999999999998

>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=99.26  E-value=2.3e-12  Score=82.72  Aligned_cols=34  Identities=21%  Similarity=0.479  Sum_probs=32.0

Q ss_pred             CCCCCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636           59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE   93 (190)
Q Consensus        59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr   93 (190)
                      ..+||.|||++.| .+|++||+|++|++++|+||+
T Consensus         5 ~~~LP~gWe~~~~-~~G~~Yy~nh~t~~ttw~~Pr   38 (40)
T 2ysf_A            5 SSGLPEGWEMRFT-VDGIPYFVDHNRRTTTYIDPR   38 (40)
T ss_dssp             CCCCCSSEEEEEC-TTCCEEEEETTTCCEESSCTT
T ss_pred             cCCCCcCcEEEEc-CCCCEEEEECCCCcEecCCCC
Confidence            4789999999999 679999999999999999998

>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}

Probab=99.25  E-value=2.5e-12  Score=80.15  Aligned_cols=33  Identities=39%  Similarity=0.899  Sum_probs=31.1

Q ss_pred             CCCCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636           60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE   93 (190)
Q Consensus        60 ~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr   93 (190)
                      .+||.|||++.| .+|++||+|++|++++|++|+
T Consensus         3 ~~LP~GWe~~~d-~~G~~Yy~n~~t~~t~We~P~   35 (36)
T 1wr3_A            3 PPLPPGWEEKVD-NLGRTYYVNHNNRSTQWHRPS   35 (36)
T ss_dssp             SCSCTTEEEEEC-SSSCEEEEETTTCCEESSCSC
T ss_pred             CCCCCCCEEEEC-CCCCEEEEECCCCCEeeeCcC
Confidence            589999999999 579999999999999999997

>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}

Probab=99.25  E-value=1.8e-12  Score=83.43  Aligned_cols=34  Identities=24%  Similarity=0.667  Sum_probs=31.9

Q ss_pred             CCCCCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636           59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE   93 (190)
Q Consensus        59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr   93 (190)
                      +.+||.|||++.|. +|++||+|++|++++|++|+
T Consensus         6 ~~~LP~gWe~~~~~-~G~~Yy~n~~t~~t~We~Pr   39 (41)
T 1wr7_A            6 QSFLPPGWEMRIAP-NGRPFFIDHNTKTTTWEDPR   39 (41)
T ss_dssp             CCSSCTTEEEEECT-TSCEEEEETTTTEEESSCGG
T ss_pred             cCCCCCCcEEEEcC-CCCEEEEECCCCCeecCCCC
Confidence            57899999999994 79999999999999999998

>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}

Probab=99.24  E-value=3.2e-12  Score=85.97  Aligned_cols=41  Identities=27%  Similarity=0.466  Sum_probs=36.6

Q ss_pred             ccccccCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           53 SVDLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        53 ~iEL~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      ..+.+.+.+||.|||++.|. +|++||+|++|++++|++|+.
T Consensus         5 ~~~~~~~~~LP~GWe~~~d~-~Gr~YYvnh~t~~T~We~P~~   45 (49)
T 2zaj_A            5 SSGLDSELELPAGWEKIEDP-VYGIYYVDHINRKTQYENPSG   45 (49)
T ss_dssp             CCCCCCSSCCCTTEEEEEET-TTEEEEEETTTTEEESSCCCS
T ss_pred             ccccCCCCCCCcCceEEEcC-CCCEEEEeCCCCCEecCCCCC
Confidence            34567789999999999995 699999999999999999994

>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*

Probab=99.24  E-value=2.8e-12  Score=86.21  Aligned_cols=38  Identities=29%  Similarity=0.638  Sum_probs=34.3

Q ss_pred             cccCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           56 LQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        56 L~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      .+...+||.|||++.| .+|++||+|++|++++|++|+.
T Consensus         6 ~~~~~~LP~gWe~~~~-~~Gr~Yy~nh~t~~T~We~Pr~   43 (50)
T 1i5h_W            6 SNDLGPLPPGWEERTH-TDGRVFFINHNIKKTQWEDPRM   43 (50)
T ss_dssp             SSCCSSCSTTEEEEEC-TTSCEEEEETTTTEEESSCTTT
T ss_pred             cccCCCCCcCcEEEEc-CCCCEEEEECCCCCEEeeCCCC
Confidence            3455789999999999 6799999999999999999994

>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=99.24  E-value=3.2e-12  Score=81.99  Aligned_cols=34  Identities=29%  Similarity=0.681  Sum_probs=31.9

Q ss_pred             CCCCCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636           59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE   93 (190)
Q Consensus        59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr   93 (190)
                      +.+||.|||++.| .+|++||+|++|++++|++|+
T Consensus         5 ~~~LP~gWe~~~~-~~Gr~Yy~nh~t~~ttW~~P~   38 (40)
T 2ysg_A            5 SSGLPYGWEEAYT-ADGIKYFINHVTQTTSWIHPV   38 (40)
T ss_dssp             SSCCCTTEEEEEC-SSSCEEEEESSSCCEECCCCC
T ss_pred             cCCCCCCcEEEEc-CCCCEEEEECCCCcCcCCCCC
Confidence            4689999999999 579999999999999999998

>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*

Probab=99.24  E-value=2.9e-12  Score=79.35  Aligned_cols=34  Identities=35%  Similarity=0.758  Sum_probs=31.6

Q ss_pred             CCCCCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636           59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE   93 (190)
Q Consensus        59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr   93 (190)
                      ..+||.|||++.|. +|++||+|++|++++|++|+
T Consensus         2 ~~~LP~gWe~~~d~-~g~~Yy~n~~t~~t~W~~P~   35 (36)
T 1wr4_A            2 SPGLPSGWEERKDA-KGRTYYVNHNNRTTTWTRPI   35 (36)
T ss_dssp             CTTCCTTEEEEECS-SSCEEEEETTTTEEESSCCC
T ss_pred             CCCCCCCCEEEECC-CCCEEEEECCCCCEeCcCCC
Confidence            36899999999995 79999999999999999996

>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}

Probab=99.23  E-value=3.7e-12  Score=80.92  Aligned_cols=35  Identities=37%  Similarity=0.826  Sum_probs=32.1

Q ss_pred             CCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      ..+||.|||++.|. +|++||+|++|++++|++|+.
T Consensus         4 ~~~LP~gWe~~~d~-~G~~YY~n~~t~~t~We~P~~   38 (39)
T 2kyk_A            4 MGPLPPGWERRVDN-MGRIYYVDHFTRTTTWQRPTL   38 (39)
T ss_dssp             SCCCCSSCEEEECT-TSCEEEECSSSCCEECCCCCC
T ss_pred             cCCCCCCcEEEEcC-CCCEEEEECCCCCEeccCCCC
Confidence            35899999999995 799999999999999999983

>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}

Probab=99.23  E-value=3.2e-12  Score=84.58  Aligned_cols=36  Identities=36%  Similarity=0.821  Sum_probs=33.1

Q ss_pred             cCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           58 IKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        58 l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      ...+||.|||++.| .+|++||+|++|++++|+||+.
T Consensus         8 ~~~~LP~gWe~~~~-~~G~~Yyinh~t~~TtWe~Pr~   43 (46)
T 2l4j_A            8 ASGPLPEGWEQAIT-PEGEIYYINHKNKTTSWLDPRL   43 (46)
T ss_dssp             TTSCCCTTCEEEEC-TTSCEEEEETTTTEEECSCCSS
T ss_pred             cCCCCCcCceeEEC-CCCCEEEEECCCCCEeCCCCCc
Confidence            35789999999999 6799999999999999999984

>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A

Probab=99.21  E-value=4.9e-12  Score=82.31  Aligned_cols=35  Identities=26%  Similarity=0.623  Sum_probs=32.3

Q ss_pred             CCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      ..+||.|||++.| .+|++||+|++|++++|+||+.
T Consensus         5 ~~~LP~GWe~~~~-~~G~~Yy~nh~t~~ttW~~Pr~   39 (42)
T 2djy_A            5 SGPLPPGWEIRNT-ATGRVYFVDHNNRTTQFTDPRL   39 (42)
T ss_dssp             CSCCCSSEEEEEC-SSSCEEEEETTTTEEESSCTTT
T ss_pred             cCCCCcCcEEEEC-CCCCEEEEECCCCCEeCCCCCC
Confidence            3589999999999 6799999999999999999994

>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}

Probab=99.20  E-value=5.1e-12  Score=83.52  Aligned_cols=36  Identities=28%  Similarity=0.732  Sum_probs=32.8

Q ss_pred             cCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           58 IKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        58 l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      .+.+||.|||++.|. +|++||+|++|++++|+||+.
T Consensus         7 ~~~~LP~gWe~~~~~-~Gr~Yyinh~t~~TtW~~Pr~   42 (46)
T 2ez5_W            7 EEEPLPPRWSMQVAP-NGRTFFIDHASRRTTWIDPRN   42 (46)
T ss_dssp             CSCCCCTTEEEEECT-TSSEEEEETTTTEEESBCTTT
T ss_pred             CCCCCCcCcEEEEcC-CCCEEEEECCCCCEeccCCCC
Confidence            356899999999995 799999999999999999994

>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1

Probab=99.20  E-value=6.1e-12  Score=78.43  Aligned_cols=34  Identities=26%  Similarity=0.725  Sum_probs=31.6

Q ss_pred             CCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        60 ~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      .+||.|||++.|. +|++||+|+.|++++|++|+.
T Consensus         2 ~~LP~gW~~~~~~-~G~~Yy~n~~t~~t~W~~P~~   35 (37)
T 1e0m_A            2 MGLPPGWDEYKTH-NGKTYYYNHNTKTSTWTDPRM   35 (37)
T ss_dssp             CCSCTTEEEEECS-SCCEEEEETTTTEEESSCTTT
T ss_pred             CCCCCCcEEEECC-CCCEEEEECCCCCeeeeCcCC
Confidence            5899999999994 799999999999999999984

>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1

Probab=99.20  E-value=1e-12  Score=92.73  Aligned_cols=59  Identities=19%  Similarity=0.338  Sum_probs=47.8

Q ss_pred             CCceeeeccc---ccccCCCcccccccccCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           33 RKRKFLSDFS---LLKTEPAIQTSVDLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        33 ~~R~~~~~~~---t~W~~P~~~~~iEL~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      .+|.||.||.   ++|++|......  .....||.|||++.|. +|++||+|+.|++++|++|+.
T Consensus        11 ~Gr~YY~n~~T~~s~W~~P~~~~~~--~~~~~lp~gW~~~~~~-~Gr~Yy~n~~t~~t~W~~P~~   72 (75)
T 1o6w_A           11 SGRIYYYNTLTKKSTWEKPKELISQ--EELLLRENGWKAAKTA-DGKVYYYNPTTRETSWTIPAF   72 (75)
T ss_dssp             TCCEEEEETTTTEEESSCCHHHHHH--HHHHHHHHTCEEEECT-TCCEEEEETTTTEEESSCCCC
T ss_pred             CCCeEEEECCCCCEEeecchhhccc--ccccCCCCeEEEEECC-CCCEEEEECCCCCEECCCCCC
Confidence            6899999887   999999543321  1123589999999986 599999999999999999985

>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1

Probab=99.19  E-value=6.4e-12  Score=81.16  Aligned_cols=34  Identities=41%  Similarity=0.938  Sum_probs=31.7

Q ss_pred             CCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        60 ~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      .+||.||+++.|. +|++||+|++|++++|++|+.
T Consensus         7 ~~LP~gW~~~~~~-~Gr~YY~n~~T~~t~We~P~~   40 (43)
T 1ymz_A            7 MPLPPGWERRTDV-EGKVYYFNVRTLTTTWERPTI   40 (43)
T ss_dssp             CCCCSSEEEEECT-TSCEEEEETTTTEEESSCCCS
T ss_pred             CCCCCCCEEEECC-CCCEEEEECCCCCCcccCCcc
Confidence            5899999999996 799999999999999999983

>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A

Probab=99.19  E-value=9e-12  Score=84.90  Aligned_cols=37  Identities=19%  Similarity=0.536  Sum_probs=33.7

Q ss_pred             ccCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           57 QIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        57 ~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      ....+||.|||++.| .+|++||+|++|++++|+||+.
T Consensus        14 ~~~~~LP~GWe~~~~-~~Gr~Yyinh~tk~TtW~dPr~   50 (53)
T 2jmf_A           14 INEGPLPPGWEIRYT-AAGERFFVDHNTRRTTFEDPRP   50 (53)
T ss_dssp             TSCSCCCTTEEEEEC-TTSCEEEEETTTCCEESSCCCS
T ss_pred             CcCCCCCcCcEEEEc-CCCCEEEEeCCCCcEecCCCCC
Confidence            446789999999999 6799999999999999999994

>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=8.5e-12  Score=80.96  Aligned_cols=35  Identities=31%  Similarity=0.811  Sum_probs=32.5

Q ss_pred             CCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      ..+||.|||++.|. +|++||+|++|++++|++|+.
T Consensus         5 ~~~LP~GWe~~~d~-~Gr~YY~n~~t~~T~We~P~~   39 (43)
T 2dmv_A            5 SSGLPPGWEQRVDQ-HGRVYYVDHVEKRTTWDRPSG   39 (43)
T ss_dssp             CCSCCTTEEEEECT-TSCEEEEETTTCCEESSCSSS
T ss_pred             CCCCCCCceEEECC-CCCEEEEECCCCCEecCCcCC
Confidence            46899999999996 799999999999999999984

>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*

Probab=99.19  E-value=6.1e-12  Score=83.90  Aligned_cols=35  Identities=23%  Similarity=0.590  Sum_probs=31.4

Q ss_pred             CCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      ..+||.|||++.| .+|++||+|++|++++|++|+.
T Consensus        10 ~~~LP~gWe~~~~-~~G~~Yy~nh~T~~ttWe~Pr~   44 (49)
T 2kpz_A           10 QGFLPKGWEVRHA-PNGRPFFIDHNTKTTTWEDPRL   44 (49)
T ss_dssp             --CCCTTEEEEEC-TTSCEEEEETTTTEEESSCTTC
T ss_pred             CCCCCCCcEEEEC-CCCCEEEEECCCCCEecCCCCC
Confidence            4689999999999 5799999999999999999994

>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=7.5e-12  Score=87.62  Aligned_cols=42  Identities=26%  Similarity=0.419  Sum_probs=37.2

Q ss_pred             cccccccCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           52 TSVDLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        52 ~~iEL~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      ...+.+.+.+||.|||++.| .+|++||+|++|++++|++|+.
T Consensus         4 g~~~~d~~~~LP~GWE~~~d-~~Gr~YYvnh~tk~T~We~P~~   45 (60)
T 2yse_A            4 GSSGLDSELELPAGWEKIED-PVYGIYYVDHINRKTQYENPVL   45 (60)
T ss_dssp             CSCCCCCCSSCCSSEEEEEC-SSSCEEEEETTTTEEESSCHHH
T ss_pred             CccccCCCCCCCCCcEEEEC-CCCCEEEEeCCCCCeeccCCCc
Confidence            34556778999999999999 5699999999999999999994

>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=99.17  E-value=1.4e-11  Score=85.21  Aligned_cols=42  Identities=26%  Similarity=0.565  Sum_probs=36.6

Q ss_pred             cccccccCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           52 TSVDLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        52 ~~iEL~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      .+.+.+...+||.|||++.|. +|++||+|++|++++|+|||.
T Consensus         5 ~~~~~~~~~~LP~GWe~~~~~-~Gr~Yyinh~tk~TtWe~Pr~   46 (57)
T 2ysd_A            5 SSGAEDNLGPLPENWEMAYTE-NGEVYFIDHNTKTTSWLDPRC   46 (57)
T ss_dssp             SCCCCSCCCSCCSSEEEEECS-SCCEEEEETTTTEEESSCTTT
T ss_pred             cccCCCCCCCCCcCcEEEECC-CCCEEEEECCCCcEecCCCCC
Confidence            344556678999999999995 699999999999999999994

>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.15  E-value=2.8e-11  Score=86.05  Aligned_cols=59  Identities=19%  Similarity=0.362  Sum_probs=48.0

Q ss_pred             CCceeeeccc---ccccCCCcccccccccCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           33 RKRKFLSDFS---LLKTEPAIQTSVDLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        33 ~~R~~~~~~~---t~W~~P~~~~~iEL~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      .+|.||.|+.   ++|++|......  ....++|.+|+++.|. .|++||+|+.|++++|++|++
T Consensus        14 ~G~~YYyN~~T~~s~We~P~~~~~~--~e~~~~~~~W~~~~~~-~Gr~YyyN~~T~~s~We~P~e   75 (75)
T 2jxw_A           14 EGYHYYYDLISGASQWEKPEGFQGD--LKKTAVKTVWVEGLSE-DGFTYYYNTETGESRWEKPDD   75 (75)
T ss_dssp             TTEEEEEETTTTEEECSCCSSCSSC--CSSSSCCCSEEEEEET-TTEEEEEETTTTEEESSCCCC
T ss_pred             CCCEEEEECCCCCEeecCCCccccc--ccccCCCccEEEEECC-CCCEEEEECcCCCEeccCcCC
Confidence            4789999876   899999643221  1235789999999998 699999999999999999974

>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1

Probab=99.14  E-value=1.5e-11  Score=82.52  Aligned_cols=35  Identities=31%  Similarity=0.736  Sum_probs=32.6

Q ss_pred             CCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      +.+||.|||++.|. +|++||+|++|++++|++|+.
T Consensus         9 ~~~LP~gWe~~~~~-~Gr~Yy~nh~t~~T~W~~P~~   43 (49)
T 2ysb_A            9 DLPLPPGWSVDWTM-RGRKYYIDHNTNTTHWSHPLE   43 (49)
T ss_dssp             CCCCCTTEEEEECS-SSCEEEEETTTTEEESSCTTT
T ss_pred             CCCCCCCceEEECC-CCCEEEEEcCCCCEEecCCCC
Confidence            46899999999996 699999999999999999995

>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=99.12  E-value=2.6e-11  Score=77.08  Aligned_cols=35  Identities=31%  Similarity=0.772  Sum_probs=32.1

Q ss_pred             CCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      +.+||.|||++.|. +|++||+|++|++++|++|+.
T Consensus         5 ~~~LP~gW~~~~d~-~Gr~YY~n~~T~~t~We~P~~   39 (40)
T 2ysh_A            5 SSGLPPGWQSYLSP-QGRRYYVNTTTNETTWERPSS   39 (40)
T ss_dssp             CSSCCTTCEEEECT-TSCEEEECSSSCCEESSSCCC
T ss_pred             CCCCCCCceEEECC-CCCEEEEECCCCCEeCCCCCC
Confidence            46899999999996 799999999999999999973

>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}

Probab=99.11  E-value=3.9e-11  Score=81.90  Aligned_cols=35  Identities=20%  Similarity=0.548  Sum_probs=32.3

Q ss_pred             CCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      ..+||.|||++.|. +|++||+|++|++++|+||+.
T Consensus         9 ~~~LP~GWe~~~~~-~G~~Yyinh~tk~TtwedPr~   43 (54)
T 1wmv_A            9 AGDLPYGWEQETDE-NGQVFFVDHINKRTTYLDPRL   43 (54)
T ss_dssp             SSCSCTTEEEEECT-TSCEEEEESSSCCEESSCTTS
T ss_pred             CCCCCcCcEEEECC-CCCEEEEeCCCCCEeecCCCC
Confidence            45899999999995 799999999999999999995

>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}

Probab=99.05  E-value=2e-11  Score=90.08  Aligned_cols=59  Identities=17%  Similarity=0.352  Sum_probs=47.5

Q ss_pred             CCceeeeccc---ccccCCCcccccccccCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           33 RKRKFLSDFS---LLKTEPAIQTSVDLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        33 ~~R~~~~~~~---t~W~~P~~~~~iEL~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      .+|.||.||.   ++|++|.......  ...+||.+|+++.+. +|++||+|+.|++++|++|++
T Consensus        23 ~Gr~YYyN~~T~~s~We~P~~~~~~~--e~~~~~~~W~~~~~~-~Gr~Yy~N~~T~~s~We~P~~   84 (92)
T 2l5f_A           23 DGRTYYYNTETKQSTWEKPDDLKTPA--EQLLSKCPWKEYKSD-SGKTYYYNSQTKESRWAKPKE   84 (92)
T ss_dssp             TSCEEEEETTTTEEESSCSGGGTCHH--HHHHHSCSEEEEECT-TCCEEEEETTTTEEESCCCHH
T ss_pred             CCCEEEEECCCCceecccCccccccc--cccccccceEEEECC-CCCEEEEECCCCCeeccCchh
Confidence            7899999887   9999995433210  113578999999885 699999999999999999984

>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}

Probab=99.05  E-value=7.8e-11  Score=80.52  Aligned_cols=37  Identities=27%  Similarity=0.582  Sum_probs=34.4

Q ss_pred             CCCCCccchhcccCCCcceEEeecCCCCccccCCCcc
Q 029636           59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENK   95 (190)
Q Consensus        59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~~   95 (190)
                      +.+||.||+.+.|..+|++||+|+.|++++|++|.+.
T Consensus         5 ~~~LP~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P~~~   41 (54)
T 2jv4_A            5 NTGLPAGWEVRHSNSKNLPYYFNPATRESRWEPPADT   41 (54)
T ss_dssp             CCCCCSSCCEEECSSSSCEEEEETTTTEEESSCCTTS
T ss_pred             CCCCCCCcEEEEECCCCCEEEEECCCCcEEecCCCCc
Confidence            4689999999999989999999999999999999953

>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}

Probab=99.00  E-value=5.3e-11  Score=92.17  Aligned_cols=49  Identities=18%  Similarity=0.351  Sum_probs=41.8

Q ss_pred             CcCCceeeecccccccCCCcccccccccCCCCCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636           31 PSRKRKFLSDFSLLKTEPAIQTSVDLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE   93 (190)
Q Consensus        31 ~~~~R~~~~~~~t~W~~P~~~~~iEL~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr   93 (190)
                      ..++|+||+||.+             +...+||.|||++.|. +|++||+|++|++++|+|||
T Consensus        55 ~~~~lV~~vn~~~-------------d~~~pLP~GWE~r~d~-~Gr~YfIdH~tktTtW~dPR  103 (109)
T 3l4h_A           55 HNRDLVNFINMFA-------------DTRLELPRGWEIKTDQ-QGKSFFVDHNSRATTFIDPR  103 (109)
T ss_dssp             TCHHHHHHHHTTC-------------CTTSCCCTTEEEEECT-TCCEEEEETTTTEEESSCSC
T ss_pred             CcCCceEEeccCC-------------CCCCCCCCCCeEEECC-CCCEEEEeCCCCCEeeCCCC
Confidence            3457788887664             2367899999999998 69999999999999999999

>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*

Probab=98.98  E-value=1.9e-10  Score=75.11  Aligned_cols=38  Identities=29%  Similarity=0.626  Sum_probs=33.8

Q ss_pred             cccCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           56 LQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        56 L~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      +..+.+||.|||++.| .+|++||+|+.|++++|+|||.
T Consensus         3 ~P~~~~LP~GWe~~~~-~~gr~y~~n~~t~~t~W~dPr~   40 (46)
T 1jmq_A            3 IPDDVPLPAGWEMAKT-SSGQRYFKNHIDQTTTWQDPRK   40 (46)
T ss_dssp             CCSSCCCCTTBCCBCC-SSCCCBEEETTTTEEESSCTTT
T ss_pred             CCCCCCCCcCcEEEEc-CCCceEEEEecCCceeecCCCc
Confidence            3345789999999999 6799999999999999999994

>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A

Probab=98.98  E-value=1.8e-10  Score=73.98  Aligned_cols=33  Identities=33%  Similarity=0.769  Sum_probs=30.5

Q ss_pred             CCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        60 ~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      .+||.|||++.|. .| +||+|++|++++|++|+.
T Consensus         2 ~~LP~GWe~~~d~-~g-~YY~n~~t~~tqWe~P~~   34 (38)
T 2ho2_A            2 SDLPAGWMRVQDT-SG-TYYWHIPTGTTQWEPPGR   34 (38)
T ss_dssp             CCSCTTEEEEECS-SC-EEEEETTTTEEESSCCCC
T ss_pred             CcCCCCceEEEeC-CC-CEEEecCCCCEeccCCCC
Confidence            4799999999997 69 999999999999999984

>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1

Probab=98.93  E-value=3.9e-10  Score=72.66  Aligned_cols=33  Identities=30%  Similarity=0.728  Sum_probs=30.5

Q ss_pred             CCCCCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636           59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE   93 (190)
Q Consensus        59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr   93 (190)
                      +.+||.|||++.|.. | .||+|++|++++|++|+
T Consensus         6 ~~~LP~GWe~~~~~~-G-~YY~n~~t~~tqWe~P~   38 (39)
T 2ysc_A            6 SGGLPPGWRKIHDAA-G-TYYWHVPSGSTQWQRPT   38 (39)
T ss_dssp             CCCCCTTEEEEEETT-E-EEEEESSSCCEESSCCC
T ss_pred             CCCCCCCcEEEEcCC-C-CEEEEcCCCCEeccCCC
Confidence            468999999999987 9 49999999999999996

>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1

Probab=98.84  E-value=9.5e-10  Score=80.37  Aligned_cols=37  Identities=30%  Similarity=0.746  Sum_probs=33.5

Q ss_pred             ccCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           57 QIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        57 ~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      +...+||.|||++.| .+|++||+|++|++++|++|+.
T Consensus         8 ~~~~~LP~gWe~~~~-~~Gr~Yy~n~~t~~t~W~~P~~   44 (88)
T 1tk7_A            8 DALGPLPDGWEKKIQ-SDNRVYFVNHKNRTTQWEDPRT   44 (88)
T ss_dssp             STTSSSSSSCCEEEE-TTTEEEEEETTTTEEEEESCCC
T ss_pred             CccCCCCCCcEEEEC-CCCCEEEEECCCCCeEeecccc
Confidence            445789999999999 5699999999999999999995

>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}

Probab=98.79  E-value=8.1e-10  Score=74.94  Aligned_cols=35  Identities=31%  Similarity=0.796  Sum_probs=33.0

Q ss_pred             CCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        60 ~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      ..||.||+.+.|..+|++||+|..|++++|++|+.
T Consensus         9 ~~LP~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~~   43 (52)
T 2jx8_A            9 ELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVL   43 (52)
T ss_dssp             HHHHHTCCEEEETTTTEEEEEETTTTEEESSCCCC
T ss_pred             CCCCcCcEEEEccccCCEEEEECCCCCEEeCCCCC
Confidence            45999999999999999999999999999999994

>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*

Probab=98.78  E-value=2.5e-09  Score=78.41  Aligned_cols=36  Identities=19%  Similarity=0.513  Sum_probs=32.9

Q ss_pred             CCCCCccchhcccCCCcceEEeecCCCCccccCCCcc
Q 029636           59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENK   95 (190)
Q Consensus        59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~~   95 (190)
                      +.+||.|||++.|. +|++||+|++|++++|++|+..
T Consensus         7 ~~~LP~gWe~~~~~-~Gr~YY~n~~t~~t~W~~P~~~   42 (90)
T 2kxq_A            7 PPDLPEGYEQRTTQ-QGQVYFLHTQTGVSTWHDPRVP   42 (90)
T ss_dssp             CCSCCSSCEEEEET-TTEEEEEETTTTEEESSCSSSC
T ss_pred             CCCCCCCcEEEECC-CCCEEEEECCCCeEeeeccccc
Confidence            46899999999995 6999999999999999999953

>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1

Probab=98.75  E-value=4.1e-09  Score=73.19  Aligned_cols=37  Identities=30%  Similarity=0.718  Sum_probs=33.7

Q ss_pred             cccCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           56 LQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        56 L~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      +..+.+||.|||++.|. +| +||+|+.|++++|++|..
T Consensus        14 ~~~~~~LPpGW~~~~D~-sG-tYY~h~~T~tTQWerP~~   50 (55)
T 2e45_A           14 FETDSDLPAGWMRVQDT-SG-TYYWHIPTGTTQWEPPGR   50 (55)
T ss_dssp             TCSCSCCCTTEEEEEET-TE-EEEEETTTCCEESSCCCC
T ss_pred             ccCCCCCCCCCeEeecC-CC-CEEEEcCCCCCccCCCCC
Confidence            45678899999999999 79 999999999999999974

>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...

Probab=98.64  E-value=9.7e-09  Score=82.67  Aligned_cols=35  Identities=37%  Similarity=0.918  Sum_probs=30.5

Q ss_pred             CCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        60 ~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      .+||.|||.+.|..+|++||+|+.|++++|++|+.
T Consensus         8 ~~LP~gWe~~~~~~~g~~yy~n~~t~~t~We~P~~   42 (166)
T 3tc5_A            8 EKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSG   42 (166)
T ss_dssp             --CCTTEEEEECTTTCCEEEEETTTCCEESSCC--
T ss_pred             CCCCCCceEEEcCCCCCEEEEECCCCCEEecCCCC
Confidence            68999999999988899999999999999999994

>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1

Probab=98.55  E-value=4.1e-08  Score=63.17  Aligned_cols=35  Identities=20%  Similarity=0.602  Sum_probs=31.3

Q ss_pred             CCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      ..|+|.+|+++.+. .|++||+|..|++++|++|.+
T Consensus         5 ~~~~~~~W~e~~~~-~G~~YYyN~~T~eS~We~P~~   39 (40)
T 2ysi_A            5 SSGTEEIWVENKTP-DGKVYYYNARTRESAWTKPDG   39 (40)
T ss_dssp             CCCCCCSEEEEECT-TSCEEEEETTTCCEESSCCSC
T ss_pred             cCCCCCCCEEEECC-CCCEEEEECCCCCEEeCCCCC
Confidence            46889999999865 699999999999999999973

>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}

Probab=98.52  E-value=3e-08  Score=73.01  Aligned_cols=35  Identities=23%  Similarity=0.639  Sum_probs=32.6

Q ss_pred             CCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      ..+||.+|+++.|. +|++||+|+.|++++|++|.+
T Consensus         9 ~~~lp~~W~e~~~~-~Gr~YYyN~~T~~s~We~P~~   43 (92)
T 2l5f_A            9 ASGAKSMWTEHKSP-DGRTYYYNTETKQSTWEKPDD   43 (92)
T ss_dssp             TTBTTTTEEEEECT-TSCEEEEETTTTEEESSCSGG
T ss_pred             CCCCCCCcEEEEcC-CCCEEEEECCCCceecccCcc
Confidence            46799999999998 799999999999999999995

>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1

Probab=98.44  E-value=6.3e-08  Score=57.95  Aligned_cols=27  Identities=30%  Similarity=0.564  Sum_probs=25.3

Q ss_pred             ccchhcccCCCcceEEeecCCCCccccCC
Q 029636           64 LDWERCLDLQSGRMYYFNRKSSKKSWSLP   92 (190)
Q Consensus        64 sgWEq~LDlkSG~iYY~N~~T~~ssw~dP   92 (190)
                      .|||  .|..+|+.||+|..|++++|++|
T Consensus         1 ~gWe--~~~~~g~~YYyN~~T~~s~We~P   27 (27)
T 1e0n_A            1 PGWE--IIHENGRPLYYNAEQKTKLHYPP   27 (27)
T ss_dssp             CCEE--EEESSSSEEEEETTTTEEESSCC
T ss_pred             CCCe--EECCCCCeEEEECCCCCEeccCC
Confidence            4799  89999999999999999999987

>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A

Probab=98.38  E-value=9.3e-08  Score=61.68  Aligned_cols=33  Identities=24%  Similarity=0.676  Sum_probs=26.7

Q ss_pred             CCCCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636           60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE   93 (190)
Q Consensus        60 ~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr   93 (190)
                      .++|.+|+++.+. .|++||+|..|++++|++|.
T Consensus         8 ~~~~~~W~e~~~~-~G~~YYyN~~T~eS~We~P~   40 (41)
T 1ywi_A            8 GSAKSMWTEHKSP-DGRTYYYNTETKQSTWEKPD   40 (41)
T ss_dssp             ----CCEEEEEET-TTEEEEEETTTTEEEESCC-
T ss_pred             CCCCCCcEEEECC-CCCEEEEECCCCCEEeCCCC
Confidence            3568899999987 69999999999999999996

>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A

Probab=98.33  E-value=2.4e-07  Score=58.35  Aligned_cols=33  Identities=21%  Similarity=0.709  Sum_probs=29.4

Q ss_pred             CCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           61 PLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        61 PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      +...+|+++.+.. |++||+|..|++++|++|.+
T Consensus         3 ~~~~~W~e~~~~~-G~~YYyN~~T~es~We~P~~   35 (37)
T 1e0l_A            3 TAVSEWTEYKTAD-GKTYYYNNRTLESTWEKPQE   35 (37)
T ss_dssp             SSSCSCEEEECTT-SCEEEEETTTTEEESSCCSS
T ss_pred             CCCCCeEEEECCC-CCEEEEECCCCCEEecCCCc
Confidence            4556899999987 99999999999999999984

>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A

Probab=98.32  E-value=1.2e-07  Score=81.90  Aligned_cols=34  Identities=24%  Similarity=0.610  Sum_probs=32.1

Q ss_pred             CCCCCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636           59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE   93 (190)
Q Consensus        59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr   93 (190)
                      ..|||.|||++.+. +|++||+||+|++++|++|+
T Consensus         9 ~~~l~~~we~~~~~-~~~~y~~~h~~~tt~w~~p~   42 (261)
T 1eg3_A            9 STSVQGPWERAISP-NKVPYYINHETQTTCWDHPK   42 (261)
T ss_dssp             HTTCCTTEEEEECT-TSCEEEEETTTTEEESSCHH
T ss_pred             CCCCCCCcceeECC-CCCeEeecCCcccccCCCCc
Confidence            48999999999996 59999999999999999999

>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}

Probab=98.25  E-value=3.5e-07  Score=83.15  Aligned_cols=36  Identities=28%  Similarity=0.680  Sum_probs=32.9

Q ss_pred             CCCCCccchhcccCCCcceEEeecCCCCccccCCCcc
Q 029636           59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPENK   95 (190)
Q Consensus        59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~~   95 (190)
                      ..|||.|||++.|. +|++||+||+|++++|+|||..
T Consensus         6 ~~~lP~gWe~~~~~-~g~~y~i~h~~~~t~w~~Pr~~   41 (429)
T 3olm_A            6 LGPLPSGWEMRLTN-TARVYFVDHNTKTTTWDDPRLP   41 (429)
T ss_dssp             CCCCCTTCCCCCSS-CCCCCEEETTTTEEESSCTTSC
T ss_pred             CCCCCCCceeEECC-CCCeEEEeCCCcceeccCCCCC
Confidence            46899999999995 7999999999999999999953

>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1

Probab=98.11  E-value=6.9e-07  Score=62.67  Aligned_cols=30  Identities=37%  Similarity=0.871  Sum_probs=27.9

Q ss_pred             ccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           64 LDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        64 sgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      +||+++.|. +|++||+|++|++++|++|++
T Consensus         2 ~~W~~~~~~-~Gr~YY~n~~T~~s~W~~P~~   31 (75)
T 1o6w_A            2 SIWKEAKDA-SGRIYYYNTLTKKSTWEKPKE   31 (75)
T ss_dssp             CCEEEEECT-TCCEEEEETTTTEEESSCCHH
T ss_pred             CCCeEEECC-CCCeEEEECCCCCEEeecchh
Confidence            479999998 699999999999999999984

>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}

Probab=97.95  E-value=2.8e-06  Score=60.08  Aligned_cols=30  Identities=27%  Similarity=0.633  Sum_probs=27.9

Q ss_pred             ccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           64 LDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        64 sgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      .+|+++.|.. |++||+|+.|++++|++|++
T Consensus         5 ~~W~e~~~~~-G~~YYyN~~T~~s~We~P~~   34 (75)
T 2jxw_A            5 GRWVEGITSE-GYHYYYDLISGASQWEKPEG   34 (75)
T ss_dssp             CCEEEEEETT-TEEEEEETTTTEEECSCCSS
T ss_pred             CCcEEEECCC-CCEEEEECCCCCEeecCCCc
Confidence            4799999986 99999999999999999984

>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}

Probab=97.51  E-value=4.9e-05  Score=60.82  Aligned_cols=35  Identities=23%  Similarity=0.615  Sum_probs=32.9

Q ss_pred             CCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        60 ~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      ..||.|||.+++..+|+.||+|..|.+.+|+.|..
T Consensus         6 ~~lp~~w~~~~s~s~~~~Yy~~~~~~~~~~~~~~~   40 (177)
T 1yw5_A            6 TGLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYG   40 (177)
T ss_dssp             CCCCTTEEEEECSSTTCEEEEETTTCCEESSCCTT
T ss_pred             CCCCchHHHHhcccCCchhhhhHHHhhHhhcCccc
Confidence            56999999999999999999999999999999873

>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1

Probab=97.48  E-value=6.7e-05  Score=50.48  Aligned_cols=28  Identities=29%  Similarity=0.725  Sum_probs=26.3

Q ss_pred             cchhcccCCCcceEEeecCCCCccccCCC
Q 029636           65 DWERCLDLQSGRMYYFNRKSSKKSWSLPE   93 (190)
Q Consensus        65 gWEq~LDlkSG~iYY~N~~T~~ssw~dPr   93 (190)
                      .|.++.+.. |+.||+|..|++++|+.|.
T Consensus         8 ~W~e~~s~~-G~~YYyN~~T~eS~WekP~   35 (50)
T 2dk1_A            8 RWVEGITSE-GYHYYYDLISGASQWEKPE   35 (50)
T ss_dssp             CEEECCCST-TCCCEEESSSCCEESSCCT
T ss_pred             CeEEEECCC-CCEEEEECCCCCEEeeCCh
Confidence            599999885 9999999999999999997

>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.30  E-value=0.0016  Score=47.25  Aligned_cols=35  Identities=20%  Similarity=0.574  Sum_probs=28.6

Q ss_pred             CCCc-cchhcccCCCcceEEeecCCCCccccCCCccc
Q 029636           61 PLPL-DWERCLDLQSGRMYYFNRKSSKKSWSLPENKQ   96 (190)
Q Consensus        61 PLPs-gWEq~LDlkSG~iYY~N~~T~~ssw~dPr~~~   96 (190)
                      |+|- .|...-.. .||+||+|..|+++.|+.|.+-+
T Consensus        16 pipgt~W~~v~T~-dGR~fyyN~~Tk~S~WekP~eLk   51 (73)
T 2dk7_A           16 PIPGTPWCVVWTG-DERVFFYNPTTRLSMWDRPDDLI   51 (73)
T ss_dssp             ECSSSSCEEEEES-SSCEEEEETTTTEECSSCCTTTT
T ss_pred             CCCCCCcEEEECC-CCCEEEecCcccceeccCChHhc
Confidence            4443 59887765 49999999999999999999643

>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=96.13  E-value=0.0031  Score=43.12  Aligned_cols=30  Identities=7%  Similarity=0.035  Sum_probs=23.3

Q ss_pred             cCCceeeeccc---ccccCCCcccccccccCCCCCcc
Q 029636           32 SRKRKFLSDFS---LLKTEPAIQTSVDLQIKDPLPLD   65 (190)
Q Consensus        32 ~~~R~~~~~~~---t~W~~P~~~~~iEL~l~~PLPsg   65 (190)
                      ..+|.||.||.   |+|++|+....    ...|||.|
T Consensus        25 ~~Gr~Yyinh~tk~TtWe~Pr~~~~----~~~plp~g   57 (57)
T 2ysd_A           25 ENGEVYFIDHNTKTTSWLDPRCLNK----QQSGPSSG   57 (57)
T ss_dssp             SSCCEEEEETTTTEEESSCTTTCSS----CCCSCCCC
T ss_pred             CCCCEEEEECCCCcEecCCCCCccc----cCCCCCCC
Confidence            47999999998   89999976553    23588875

>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A

Probab=94.32  E-value=0.021  Score=36.57  Aligned_cols=21  Identities=19%  Similarity=0.382  Sum_probs=17.4

Q ss_pred             cCCceeeeccc---ccccCCCccc
Q 029636           32 SRKRKFLSDFS---LLKTEPAIQT   52 (190)
Q Consensus        32 ~~~R~~~~~~~---t~W~~P~~~~   52 (190)
                      ..+|.||.||.   |+|++|+...
T Consensus        18 ~~G~~Yy~nh~t~~ttW~~Pr~~~   41 (42)
T 2djy_A           18 ATGRVYFVDHNNRTTQFTDPRLSA   41 (42)
T ss_dssp             SSSCEEEEETTTTEEESSCTTTSC
T ss_pred             CCCCEEEEECCCCCEeCCCCCCCC
Confidence            47899999997   9999996543

>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}

Probab=94.07  E-value=0.024  Score=36.85  Aligned_cols=21  Identities=19%  Similarity=0.260  Sum_probs=17.5

Q ss_pred             cCCceeeeccc---ccccCCCccc
Q 029636           32 SRKRKFLSDFS---LLKTEPAIQT   52 (190)
Q Consensus        32 ~~~R~~~~~~~---t~W~~P~~~~   52 (190)
                      ..+|.||.||.   |+|++|...+
T Consensus        21 ~~Gr~Yyinh~t~~TtW~~Pr~~~   44 (46)
T 2ez5_W           21 PNGRTFFIDHASRRTTWIDPRNGR   44 (46)
T ss_dssp             TTSSEEEEETTTTEEESBCTTTCC
T ss_pred             CCCCEEEEECCCCCEeccCCCCCC
Confidence            47899999998   9999996643

>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}

Probab=93.87  E-value=0.026  Score=37.45  Aligned_cols=20  Identities=10%  Similarity=0.001  Sum_probs=16.8

Q ss_pred             cCCceeeeccc---ccccCCCcc
Q 029636           32 SRKRKFLSDFS---LLKTEPAIQ   51 (190)
Q Consensus        32 ~~~R~~~~~~~---t~W~~P~~~   51 (190)
                      ..+|.||+||.   |+|++|...
T Consensus        24 ~~Gr~YYvnh~t~~T~We~P~~~   46 (49)
T 2zaj_A           24 PVYGIYYVDHINRKTQYENPSGP   46 (49)
T ss_dssp             TTTEEEEEETTTTEEESSCCCSS
T ss_pred             CCCCEEEEeCCCCCEecCCCCCC
Confidence            46899999997   999999654

>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}

Probab=93.80  E-value=0.024  Score=35.23  Aligned_cols=18  Identities=6%  Similarity=0.078  Sum_probs=15.7

Q ss_pred             cCCceeeeccc---ccccCCC
Q 029636           32 SRKRKFLSDFS---LLKTEPA   49 (190)
Q Consensus        32 ~~~R~~~~~~~---t~W~~P~   49 (190)
                      ..+|.||.||.   |+|++|+
T Consensus        17 ~~G~~Yy~nh~t~~ttW~~Pr   37 (38)
T 2law_A           17 QDGEIYYINHKNKTTSWLDPR   37 (38)
T ss_dssp             TTTEEEEEETTTTEEESSCTT
T ss_pred             CCCCEEEEECCCCCEeCCCCC
Confidence            46899999997   9999995

>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=93.80  E-value=0.026  Score=35.54  Aligned_cols=19  Identities=11%  Similarity=0.177  Sum_probs=16.3

Q ss_pred             cCCceeeeccc---ccccCCCc
Q 029636           32 SRKRKFLSDFS---LLKTEPAI   50 (190)
Q Consensus        32 ~~~R~~~~~~~---t~W~~P~~   50 (190)
                      ..+|.||.||.   |+|++|+.
T Consensus        18 ~~G~~Yy~nh~t~~ttw~~Pr~   39 (40)
T 2ysf_A           18 VDGIPYFVDHNRRTTTYIDPRT   39 (40)
T ss_dssp             TTCCEEEEETTTCCEESSCTTT
T ss_pred             CCCCEEEEECCCCcEecCCCCC
Confidence            47899999998   99999964

>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=93.76  E-value=0.027  Score=35.37  Aligned_cols=18  Identities=11%  Similarity=0.141  Sum_probs=16.0

Q ss_pred             cCCceeeeccc---ccccCCC
Q 029636           32 SRKRKFLSDFS---LLKTEPA   49 (190)
Q Consensus        32 ~~~R~~~~~~~---t~W~~P~   49 (190)
                      ..+|.||.||.   |+|++|.
T Consensus        18 ~~Gr~Yy~nh~t~~ttW~~P~   38 (40)
T 2ysg_A           18 ADGIKYFINHVTQTTSWIHPV   38 (40)
T ss_dssp             SSSCEEEEESSSCCEECCCCC
T ss_pred             CCCCEEEEECCCCcCcCCCCC
Confidence            57999999998   9999995

>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*

Probab=93.70  E-value=0.028  Score=36.80  Aligned_cols=21  Identities=19%  Similarity=0.376  Sum_probs=17.0

Q ss_pred             cCCceeeeccc---ccccCCCccc
Q 029636           32 SRKRKFLSDFS---LLKTEPAIQT   52 (190)
Q Consensus        32 ~~~R~~~~~~~---t~W~~P~~~~   52 (190)
                      ..+|.||.||.   |+|++|...+
T Consensus        23 ~~G~~Yy~nh~T~~ttWe~Pr~~~   46 (49)
T 2kpz_A           23 PNGRPFFIDHNTKTTTWEDPRLKI   46 (49)
T ss_dssp             TTSCEEEEETTTTEEESSCTTCC-
T ss_pred             CCCCEEEEECCCCCEecCCCCCCC
Confidence            46899999998   9999996654

>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.69  E-value=0.03  Score=35.60  Aligned_cols=20  Identities=15%  Similarity=0.147  Sum_probs=16.8

Q ss_pred             cCCceeeeccc---ccccCCCcc
Q 029636           32 SRKRKFLSDFS---LLKTEPAIQ   51 (190)
Q Consensus        32 ~~~R~~~~~~~---t~W~~P~~~   51 (190)
                      ..+|.||.||.   |+|++|...
T Consensus        18 ~~Gr~YY~n~~t~~T~We~P~~~   40 (43)
T 2dmv_A           18 QHGRVYYVDHVEKRTTWDRPSGP   40 (43)
T ss_dssp             TTSCEEEEETTTCCEESSCSSSC
T ss_pred             CCCCEEEEECCCCCEecCCcCCC
Confidence            37899999997   999999654

>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}

Probab=93.62  E-value=0.045  Score=36.83  Aligned_cols=24  Identities=21%  Similarity=0.331  Sum_probs=19.6

Q ss_pred             cCCceeeeccc---ccccCCCcccccc
Q 029636           32 SRKRKFLSDFS---LLKTEPAIQTSVD   55 (190)
Q Consensus        32 ~~~R~~~~~~~---t~W~~P~~~~~iE   55 (190)
                      ..+|.||.||.   |+|++|.....++
T Consensus        22 ~~G~~Yyinh~tk~TtwedPr~~~~~~   48 (54)
T 1wmv_A           22 ENGQVFFVDHINKRTTYLDPRLAFTVD   48 (54)
T ss_dssp             TTSCEEEEESSSCCEESSCTTSSCCCC
T ss_pred             CCCCEEEEeCCCCCEeecCCCCccccc
Confidence            36899999998   9999997766554

>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}

Probab=93.56  E-value=0.032  Score=33.95  Aligned_cols=18  Identities=11%  Similarity=0.222  Sum_probs=15.7

Q ss_pred             cCCceeeeccc---ccccCCC
Q 029636           32 SRKRKFLSDFS---LLKTEPA   49 (190)
Q Consensus        32 ~~~R~~~~~~~---t~W~~P~   49 (190)
                      ..+|.||.||.   |+|++|.
T Consensus        15 ~~G~~Yy~n~~t~~t~We~P~   35 (36)
T 1wr3_A           15 NLGRTYYVNHNNRSTQWHRPS   35 (36)
T ss_dssp             SSSCEEEEETTTCCEESSCSC
T ss_pred             CCCCEEEEECCCCCEeeeCcC
Confidence            47899999988   9999995

>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*

Probab=93.55  E-value=0.034  Score=36.74  Aligned_cols=20  Identities=20%  Similarity=0.363  Sum_probs=16.9

Q ss_pred             cCCceeeeccc---ccccCCCcc
Q 029636           32 SRKRKFLSDFS---LLKTEPAIQ   51 (190)
Q Consensus        32 ~~~R~~~~~~~---t~W~~P~~~   51 (190)
                      ..+|.||.||.   |+|++|...
T Consensus        22 ~~Gr~Yy~nh~t~~T~We~Pr~~   44 (50)
T 1i5h_W           22 TDGRVFFINHNIKKTQWEDPRMQ   44 (50)
T ss_dssp             TTSCEEEEETTTTEEESSCTTTS
T ss_pred             CCCCEEEEECCCCCEEeeCCCCC
Confidence            56899999998   899999643

>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}

Probab=93.40  E-value=0.037  Score=34.37  Aligned_cols=19  Identities=16%  Similarity=0.211  Sum_probs=16.1

Q ss_pred             cCCceeeeccc---ccccCCCc
Q 029636           32 SRKRKFLSDFS---LLKTEPAI   50 (190)
Q Consensus        32 ~~~R~~~~~~~---t~W~~P~~   50 (190)
                      ..+|.||.||.   |+|++|..
T Consensus        17 ~~G~~YY~n~~t~~t~We~P~~   38 (39)
T 2kyk_A           17 NMGRIYYVDHFTRTTTWQRPTL   38 (39)
T ss_dssp             TTSCEEEECSSSCCEECCCCCC
T ss_pred             CCCCEEEEECCCCCEeccCCCC
Confidence            37899999988   89999953

>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A

Probab=93.32  E-value=0.036  Score=37.22  Aligned_cols=20  Identities=15%  Similarity=0.270  Sum_probs=17.1

Q ss_pred             cCCceeeeccc---ccccCCCcc
Q 029636           32 SRKRKFLSDFS---LLKTEPAIQ   51 (190)
Q Consensus        32 ~~~R~~~~~~~---t~W~~P~~~   51 (190)
                      ..+|.||.||.   |+|++|+..
T Consensus        29 ~~Gr~Yyinh~tk~TtW~dPr~~   51 (53)
T 2jmf_A           29 AAGERFFVDHNTRRTTFEDPRPG   51 (53)
T ss_dssp             TTSCEEEEETTTCCEESSCCCSS
T ss_pred             CCCCEEEEeCCCCcEecCCCCCC
Confidence            47899999998   999999654

>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*

Probab=93.04  E-value=0.042  Score=33.10  Aligned_cols=18  Identities=17%  Similarity=0.338  Sum_probs=15.4

Q ss_pred             cCCceeeeccc---ccccCCC
Q 029636           32 SRKRKFLSDFS---LLKTEPA   49 (190)
Q Consensus        32 ~~~R~~~~~~~---t~W~~P~   49 (190)
                      ..+|.||.||.   |+|++|.
T Consensus        15 ~~g~~Yy~n~~t~~t~W~~P~   35 (36)
T 1wr4_A           15 AKGRTYYVNHNNRTTTWTRPI   35 (36)
T ss_dssp             SSSCEEEEETTTTEEESSCCC
T ss_pred             CCCCEEEEECCCCCEeCcCCC
Confidence            36899999987   9999994

>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1

Probab=92.88  E-value=0.046  Score=36.10  Aligned_cols=20  Identities=25%  Similarity=0.302  Sum_probs=16.9

Q ss_pred             cCCceeeeccc---ccccCCCcc
Q 029636           32 SRKRKFLSDFS---LLKTEPAIQ   51 (190)
Q Consensus        32 ~~~R~~~~~~~---t~W~~P~~~   51 (190)
                      ..+|.||.||.   |+|++|...
T Consensus        22 ~~Gr~Yy~nh~t~~T~W~~P~~~   44 (49)
T 2ysb_A           22 MRGRKYYIDHNTNTTHWSHPLES   44 (49)
T ss_dssp             SSSCEEEEETTTTEEESSCTTTS
T ss_pred             CCCCEEEEEcCCCCEEecCCCCC
Confidence            47899999998   999999543

>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=92.85  E-value=0.045  Score=36.15  Aligned_cols=19  Identities=11%  Similarity=0.102  Sum_probs=16.2

Q ss_pred             CCceeeeccc---ccccCCCcc
Q 029636           33 RKRKFLSDFS---LLKTEPAIQ   51 (190)
Q Consensus        33 ~~R~~~~~~~---t~W~~P~~~   51 (190)
                      .+|.||+||.   |+|++|...
T Consensus        25 ~g~~YYvnh~t~~T~We~P~~~   46 (49)
T 2dwv_A           25 EFGTYYVDHTNKRAQYRHPSGP   46 (49)
T ss_dssp             TTEEEEEETTTTEEESSCCCCC
T ss_pred             CCCEEEEECCCCCEeccCcCCC
Confidence            6789999998   999999653

>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}

Probab=92.83  E-value=0.037  Score=34.86  Aligned_cols=19  Identities=21%  Similarity=0.399  Sum_probs=16.0

Q ss_pred             cCCceeeeccc---ccccCCCc
Q 029636           32 SRKRKFLSDFS---LLKTEPAI   50 (190)
Q Consensus        32 ~~~R~~~~~~~---t~W~~P~~   50 (190)
                      ..+|.||.||.   |+|++|+.
T Consensus        19 ~~G~~Yy~n~~t~~t~We~Pr~   40 (41)
T 1wr7_A           19 PNGRPFFIDHNTKTTTWEDPRL   40 (41)
T ss_dssp             TTSCEEEEETTTTEEESSCGGG
T ss_pred             CCCCEEEEECCCCCeecCCCCC
Confidence            36899999998   99999953

>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}

Probab=92.79  E-value=0.052  Score=35.28  Aligned_cols=20  Identities=5%  Similarity=0.160  Sum_probs=17.1

Q ss_pred             cCCceeeeccc---ccccCCCcc
Q 029636           32 SRKRKFLSDFS---LLKTEPAIQ   51 (190)
Q Consensus        32 ~~~R~~~~~~~---t~W~~P~~~   51 (190)
                      ..+|.||.||.   |+|++|...
T Consensus        22 ~~G~~Yyinh~t~~TtWe~Pr~~   44 (46)
T 2l4j_A           22 PEGEIYYINHKNKTTSWLDPRLE   44 (46)
T ss_dssp             TTSCEEEEETTTTEEECSCCSSC
T ss_pred             CCCCEEEEECCCCCEeCCCCCcC
Confidence            57899999998   999999653

>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.76  E-value=0.023  Score=39.33  Aligned_cols=27  Identities=11%  Similarity=0.134  Sum_probs=20.0

Q ss_pred             cCCceeeeccc---ccccCCCccccccccc
Q 029636           32 SRKRKFLSDFS---LLKTEPAIQTSVDLQI   58 (190)
Q Consensus        32 ~~~R~~~~~~~---t~W~~P~~~~~iEL~l   58 (190)
                      ..+|.||+||.   |+|++|...+.....+
T Consensus        24 ~~Gr~YYvnh~tk~T~We~P~~~~~~~~~~   53 (60)
T 2yse_A           24 PVYGIYYVDHINRKTQYENPVLEAKRKKQL   53 (60)
T ss_dssp             SSSCEEEEETTTTEEESSCHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCCCeeccCCCchhhhcccc
Confidence            46899999998   9999996654433333

>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1

Probab=92.42  E-value=0.061  Score=32.62  Aligned_cols=19  Identities=11%  Similarity=0.279  Sum_probs=15.9

Q ss_pred             cCCceeeeccc---ccccCCCc
Q 029636           32 SRKRKFLSDFS---LLKTEPAI   50 (190)
Q Consensus        32 ~~~R~~~~~~~---t~W~~P~~   50 (190)
                      ..+|.||.||.   ++|++|..
T Consensus        14 ~~G~~Yy~n~~t~~t~W~~P~~   35 (37)
T 1e0m_A           14 HNGKTYYYNHNTKTSTWTDPRM   35 (37)
T ss_dssp             SSCCEEEEETTTTEEESSCTTT
T ss_pred             CCCCEEEEECCCCCeeeeCcCC
Confidence            36899999887   99999964

>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}

Probab=92.23  E-value=0.052  Score=36.57  Aligned_cols=22  Identities=14%  Similarity=0.027  Sum_probs=17.9

Q ss_pred             CcCCceeeeccc---ccccCCCccc
Q 029636           31 PSRKRKFLSDFS---LLKTEPAIQT   52 (190)
Q Consensus        31 ~~~~R~~~~~~~---t~W~~P~~~~   52 (190)
                      +..+|.||.|+.   ++|++|....
T Consensus        18 ~~~Gr~YY~N~~T~~sqWe~P~~~~   42 (54)
T 2jv4_A           18 NSKNLPYYFNPATRESRWEPPADTD   42 (54)
T ss_dssp             SSSSCEEEEETTTTEEESSCCTTSC
T ss_pred             CCCCCEEEEECCCCcEEecCCCCcc
Confidence            457999999888   9999996543

>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=91.64  E-value=0.083  Score=32.76  Aligned_cols=19  Identities=11%  Similarity=0.263  Sum_probs=15.9

Q ss_pred             cCCceeeeccc---ccccCCCc
Q 029636           32 SRKRKFLSDFS---LLKTEPAI   50 (190)
Q Consensus        32 ~~~R~~~~~~~---t~W~~P~~   50 (190)
                      ..+|.||.||.   ++|++|..
T Consensus        18 ~~Gr~YY~n~~T~~t~We~P~~   39 (40)
T 2ysh_A           18 PQGRRYYVNTTTNETTWERPSS   39 (40)
T ss_dssp             TTSCEEEECSSSCCEESSSCCC
T ss_pred             CCCCEEEEECCCCCEeCCCCCC
Confidence            36899999987   99999953

>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1

Probab=90.84  E-value=0.11  Score=32.70  Aligned_cols=18  Identities=11%  Similarity=0.207  Sum_probs=15.5

Q ss_pred             CCceeeeccc---ccccCCCc
Q 029636           33 RKRKFLSDFS---LLKTEPAI   50 (190)
Q Consensus        33 ~~R~~~~~~~---t~W~~P~~   50 (190)
                      .+|.||.||.   |+|++|..
T Consensus        20 ~Gr~YY~n~~T~~t~We~P~~   40 (43)
T 1ymz_A           20 EGKVYYFNVRTLTTTWERPTI   40 (43)
T ss_dssp             TSCEEEEETTTTEEESSCCCS
T ss_pred             CCCEEEEECCCCCCcccCCcc
Confidence            6899999888   99999954

>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*

Probab=90.28  E-value=0.13  Score=32.79  Aligned_cols=21  Identities=10%  Similarity=0.213  Sum_probs=17.1

Q ss_pred             cCCceeeeccc---ccccCCCccc
Q 029636           32 SRKRKFLSDFS---LLKTEPAIQT   52 (190)
Q Consensus        32 ~~~R~~~~~~~---t~W~~P~~~~   52 (190)
                      ..+|.||.||.   |+|++|+...
T Consensus        19 ~~gr~y~~n~~t~~t~W~dPr~~~   42 (46)
T 1jmq_A           19 SSGQRYFKNHIDQTTTWQDPRKAM   42 (46)
T ss_dssp             SSCCCBEEETTTTEEESSCTTTSS
T ss_pred             CCCceEEEEecCCceeecCCCchh
Confidence            46889999888   7999997654

>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A

Probab=88.82  E-value=0.25  Score=37.25  Aligned_cols=46  Identities=28%  Similarity=0.519  Sum_probs=21.0

Q ss_pred             CCCcCCceeeecccccccCCCcccccccccCCCCCccchhcccC-CC------cceEEeecCCCCc
Q 029636           29 DNPSRKRKFLSDFSLLKTEPAIQTSVDLQIKDPLPLDWERCLDL-QS------GRMYYFNRKSSKK   87 (190)
Q Consensus        29 ~~~~~~R~~~~~~~t~W~~P~~~~~iEL~l~~PLPsgWEq~LDl-kS------G~iYY~N~~T~~s   87 (190)
                      +++++.|.+..|+.     +       +-.+.+||.||+..+=+ ++      ..|||+.. +|++
T Consensus         3 ~~~~~rr~~i~~~~-----~-------~~~~~~lP~GW~re~~~R~~G~s~gk~DvYY~sP-~Gkk   55 (97)
T 3c2i_A            3 ASPKQRRSIIRDRG-----P-------MYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKA   55 (97)
T ss_dssp             ------------CC-----C-------CCCCTTSCTTCEEEEEECCSSTTTTCEEEEEECT-TSCE
T ss_pred             CCCcccceeEecCC-----c-------ccCCCCCCCCCEEEEEEecCCCCCCcceEEEECC-CCCE
Confidence            45677777766422     2       11346799999875442 22      37899987 6765

>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}

Probab=85.52  E-value=0.32  Score=32.41  Aligned_cols=21  Identities=14%  Similarity=0.137  Sum_probs=16.9

Q ss_pred             CcCCceeeeccc---ccccCCCcc
Q 029636           31 PSRKRKFLSDFS---LLKTEPAIQ   51 (190)
Q Consensus        31 ~~~~R~~~~~~~---t~W~~P~~~   51 (190)
                      ...+|.||.|+.   ++|+.|...
T Consensus        21 ~~~gr~YY~N~~T~~SqWe~P~~~   44 (52)
T 2jx8_A           21 RRENRPYYFNRFTNQSLWEMPVLG   44 (52)
T ss_dssp             TTTTEEEEEETTTTEEESSCCCCT
T ss_pred             cccCCEEEEECCCCCEEeCCCCCC
Confidence            357899999888   899999544

>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}

Probab=85.50  E-value=0.37  Score=37.03  Aligned_cols=20  Identities=20%  Similarity=0.399  Sum_probs=17.0

Q ss_pred             cCCceeeeccc---ccccCCCcc
Q 029636           32 SRKRKFLSDFS---LLKTEPAIQ   51 (190)
Q Consensus        32 ~~~R~~~~~~~---t~W~~P~~~   51 (190)
                      ..+|.||+||.   |+|++|+..
T Consensus        83 ~~Gr~YfIdH~tktTtW~dPRl~  105 (109)
T 3l4h_A           83 QQGKSFFVDHNSRATTFIDPRIP  105 (109)
T ss_dssp             TTCCEEEEETTTTEEESSCSCCS
T ss_pred             CCCCEEEEeCCCCCEeeCCCCcc
Confidence            47999999998   999999543

>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E

Probab=84.44  E-value=0.41  Score=34.20  Aligned_cols=21  Identities=38%  Similarity=0.882  Sum_probs=17.8

Q ss_pred             eeCccceeeeeecCCCCCCCCCCcc
Q 029636          137 LACMNCHLLVILSKSSPSCPNCKFV  161 (190)
Q Consensus       137 ~gC~~Clmyvm~~k~~p~CP~Ck~~  161 (190)
                      .+|.+|+..|    ....||+|.+.
T Consensus        12 ~AC~~C~~~~----~~~~CPnC~s~   32 (69)
T 1ryq_A           12 KACRHCHYIT----SEDRCPVCGSR   32 (69)
T ss_dssp             EEETTTCBEE----SSSSCTTTCCC
T ss_pred             hhHHhCCccc----cCCcCCCccCC
Confidence            5899999955    77899999865

>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}

Probab=83.30  E-value=0.44  Score=35.07  Aligned_cols=29  Identities=31%  Similarity=0.704  Sum_probs=19.0

Q ss_pred             CCCCeEEeeCccceeeeeecCCCCCCCCCCccc
Q 029636          130 ASNNMVALACMNCHLLVILSKSSPSCPNCKFVH  162 (190)
Q Consensus       130 ~~~~mv~~gC~~Clmyvm~~k~~p~CP~Ck~~v  162 (190)
                      -+..|..-+|.+|...+  .  ...||+|.+.-
T Consensus        17 ~~~~m~~rAC~~C~~v~--~--~d~CPnCgs~~   45 (81)
T 3p8b_A           17 RGSHMSEKACRHCHYIT--S--EDRCPVCGSRD   45 (81)
T ss_dssp             -----CCEEETTTCBEE--S--SSSCTTTCCCC
T ss_pred             CCcchhHHHHhhCCCcc--C--CCCCCCCCCCc
Confidence            45678888999999875  2  23799999854

>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...

Probab=82.88  E-value=0.5  Score=37.54  Aligned_cols=23  Identities=17%  Similarity=0.108  Sum_probs=15.9

Q ss_pred             CcCCceeeeccc---ccccCCCcccc
Q 029636           31 PSRKRKFLSDFS---LLKTEPAIQTS   53 (190)
Q Consensus        31 ~~~~R~~~~~~~---t~W~~P~~~~~   53 (190)
                      +..+|.||.||.   |+|++|.....
T Consensus        20 ~~~g~~yy~n~~t~~t~We~P~~~~~   45 (166)
T 3tc5_A           20 RSSGRVYYFNHITNASQWERPSGNSS   45 (166)
T ss_dssp             TTTCCEEEEETTTCCEESSCC-----
T ss_pred             CCCCCEEEEECCCCCEEecCCCCCcc
Confidence            457999999987   99999965543

>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A

Probab=80.51  E-value=0.75  Score=28.89  Aligned_cols=15  Identities=7%  Similarity=0.056  Sum_probs=12.7

Q ss_pred             eeeeccc---ccccCCCc
Q 029636           36 KFLSDFS---LLKTEPAI   50 (190)
Q Consensus        36 ~~~~~~~---t~W~~P~~   50 (190)
                      .||.||.   |||++|..
T Consensus        17 ~YY~n~~t~~tqWe~P~~   34 (38)
T 2ho2_A           17 TYYWHIPTGTTQWEPPGR   34 (38)
T ss_dssp             EEEEETTTTEEESSCCCC
T ss_pred             CEEEecCCCCEeccCCCC
Confidence            8888886   99999954

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	190
d1pina1	34	b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Ho	2e-07
d1tk7a1	45	b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb)	1e-06
d1i5hw_	50	b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain	3e-06
d2jmfa1	33	b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII	8e-06
d1jmqa_	46	b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens	1e-05
d2rm0w1	37	b.72.1.1 (W:1-37) Formin binding protein FBP28 dom	7e-04
d1o6wa2	46	b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's	0.002

>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Mitotic rotamase PIN1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (103), Expect = 2e-07
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 62 LPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
          LP  WE+ +   SGR+YYFN  ++   W  P
Sbjct: 2  LPPGWEKRMSRSSGRVYYFNHITNASQWERP 32

>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 45

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Suppressor of deltex (Cg4244-pb)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.6 bits (98), Expect = 1e-06
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 61 PLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
          PLP  WE+ +     R+Y+ N K+    W  P
Sbjct: 12 PLPDGWEKKIQ-SDNRVYFVNHKNRTTQWEDP 42

>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 50

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (95), Expect = 3e-06
 Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
           PLP  WE       GR+++ N    K  W  P
Sbjct: 10 GPLPPGWEERTH-TDGRVFFINHNIKKTQWEDP 41

>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 33

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.2 bits (92), Expect = 8e-06
 Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 61 PLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
          PLP  WE      +G  ++ +  + + ++  P
Sbjct: 2  PLPPGWEIRYT-AAGERFFVDHNTRRTTFEDP 32

>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Yap65 ww domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (91), Expect = 1e-05
 Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 55 DLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLP 92
          ++    PLP  WE      SG+ Y+ N      +W  P
Sbjct: 2  EIPDDVPLPAGWEMAKT-SSGQRYFKNHIDQTTTWQDP 38

>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Formin binding protein FBP28 domain
species: Domestic mouse (Mus musculus) [TaxId: 10090]

 Score = 34.0 bits (78), Expect = 7e-04
 Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 61 PLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE 93
              +W        G+ YY+N ++ + +W  P+
Sbjct: 3  TAVSEWTEYKT-ADGKTYYYNNRTLESTWEKPQ 34

>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 46

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Splicing factor prp40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 32.9 bits (75), Expect = 0.002
 Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 65 DWERCLDLQSGRMYYFNRKSSKKSWSLPENKQK 97
           W+       G++YY+N  + + SW++P  ++K
Sbjct: 15 GWKAAKT-ADGKVYYYNPTTRETSWTIPAFEKK 46

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	190
d2jmfa1	33	Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Dr	99.34
d1jmqa_	46	Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606	99.3
d1pina1	34	Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId	99.29
d1tk7a1	45	Suppressor of deltex (Cg4244-pb) {Fruit fly (Droso	99.17
d1i5hw_	50	Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus n	99.15
d2rm0w1	37	Formin binding protein FBP28 domain {Domestic mous	98.61
d1ywia1	28	Huntingtin-interacting protein HYPA/FBP11 {Human (	98.21
d1o6wa2	46	Splicing factor prp40 {Baker's yeast (Saccharomyce	98.18
d1o6wa1	29	Splicing factor prp40 {Baker's yeast (Saccharomyce	98.18
d2dk1a1	38	WW domain-binding protein 4, WBP4 {Human (Homo sap	98.01
d2ho2a1	33	Amyloid beta A4 precursor protein-binding family B	97.46
d2jmfa1	33	Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Dr	94.73
d1pina1	34	Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId	93.36
d1tk7a1	45	Suppressor of deltex (Cg4244-pb) {Fruit fly (Droso	93.26
d1jmqa_	46	Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606	93.03
d1eg3a3	38	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	92.19
d1i5hw_	50	Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus n	92.08
d2rm0w1	37	Formin binding protein FBP28 domain {Domestic mous	81.12

>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.34  E-value=1.7e-13  Score=84.68  Aligned_cols=32  Identities=22%  Similarity=0.653  Sum_probs=30.7

Q ss_pred             CCCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636           61 PLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE   93 (190)
Q Consensus        61 PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr   93 (190)
                      |||.|||++.|. +|++||+|++|++++|+|||
T Consensus         2 pLP~GWe~~~d~-~G~~Yyinh~t~~T~w~~PR   33 (33)
T d2jmfa1           2 PLPPGWEIRYTA-AGERFFVDHNTRRTTFEDPR   33 (33)
T ss_dssp             CCCTTEEEEECT-TSCEEEEETTTCCEESSCCC
T ss_pred             ccCCCeeEEECC-CCCEEEEECCCCcEecCCCC
Confidence            899999999995 69999999999999999997

>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Yap65 ww domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.8e-13  Score=88.38  Aligned_cols=39  Identities=28%  Similarity=0.613  Sum_probs=35.0

Q ss_pred             ccccCCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           55 DLQIKDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        55 EL~l~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      |+..+.|||.|||++.|. +|++||+|++|++++|++||.
T Consensus         2 d~~~~~~LP~GWe~~~d~-~G~~Yyinh~t~~T~w~~Pr~   40 (46)
T d1jmqa_           2 EIPDDVPLPAGWEMAKTS-SGQRYFKNHIDQTTTWQDPRK   40 (46)
T ss_dssp             CCCSSCCCCTTBCCBCCS-SCCCBEEETTTTEEESSCTTT
T ss_pred             CCCccCCCCCCceEEECC-CCCEEEEECCCCCEecCCCCc
Confidence            445578999999999996 699999999999999999994

>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Mitotic rotamase PIN1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=5.2e-13  Score=82.42  Aligned_cols=33  Identities=39%  Similarity=0.916  Sum_probs=31.8

Q ss_pred             CCCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636           61 PLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE   93 (190)
Q Consensus        61 PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr   93 (190)
                      .||.|||++.|..+|++||+|+.|++++|++|.
T Consensus         1 ~LP~GW~~~~d~~~G~~YY~n~~T~~T~W~~Pt   33 (34)
T d1pina1           1 KLPPGWEKRMSRSSGRVYYFNHITNASQWERPS   33 (34)
T ss_dssp             CCCTTEEEEECTTSCCEEEEETTTCCEESSCSC
T ss_pred             CcCCCcEEEECCCCCCEEEEECCCCCEEccCCC
Confidence            499999999999999999999999999999996

>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Suppressor of deltex (Cg4244-pb)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.17  E-value=3.5e-12  Score=83.39  Aligned_cols=34  Identities=32%  Similarity=0.783  Sum_probs=31.8

Q ss_pred             CCCCCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636           59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE   93 (190)
Q Consensus        59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr   93 (190)
                      ..|||.|||++.|. +|++||+|++|++++|++||
T Consensus        10 ~gpLP~GWe~~~d~-~G~~Yyinh~t~~T~w~~PR   43 (45)
T d1tk7a1          10 LGPLPDGWEKKIQS-DNRVYFVNHKNRTTQWEDPR   43 (45)
T ss_dssp             TSSSSSSCCEEEET-TTEEEEEETTTTEEEEESCC
T ss_pred             CCCCCCCceEEECC-CCCEEEEECCCCCEECCCCC
Confidence            35899999999997 59999999999999999998

>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=7.4e-12  Score=83.37  Aligned_cols=35  Identities=31%  Similarity=0.730  Sum_probs=32.3

Q ss_pred             CCCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           59 KDPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        59 ~~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      ..|||.|||++.|. +|++||+|++|++++|++||-
T Consensus         9 ~~pLP~gWe~~~~~-~G~~YY~nh~t~~T~w~~Pr~   43 (50)
T d1i5hw_           9 LGPLPPGWEERTHT-DGRVFFINHNIKKTQWEDPRM   43 (50)
T ss_dssp             CSSCSTTEEEEECT-TSCEEEEETTTTEEESSCTTT
T ss_pred             CCCCCCCceEEECC-CCCEEEEECCCCCEeCCCCCC
Confidence            46899999999996 599999999999999999993

>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Formin binding protein FBP28 domain
species: Domestic mouse (Mus musculus) [TaxId: 10090]

Probab=98.61  E-value=8.3e-09  Score=64.65  Aligned_cols=34  Identities=21%  Similarity=0.682  Sum_probs=30.7

Q ss_pred             CCCCccchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        60 ~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      .+++++|+++.|. .|++||+|..|++++|++|.+
T Consensus         2 A~~~s~W~e~~~~-~Gr~YY~N~~T~~s~We~P~e   35 (37)
T d2rm0w1           2 ATAVSEWTEYKTA-DGKTYYYNNRTLESTWEKPQE   35 (37)
T ss_dssp             CCCSCCEEEEECT-TCCEEEEETTTTEEESSCCSS
T ss_pred             CCCccCCEEEECC-CCCEEEEECCCCCEeCCCccc
Confidence            3578899999997 599999999999999999984

>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Huntingtin-interacting protein HYPA/FBP11
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2e-07  Score=55.35  Aligned_cols=28  Identities=29%  Similarity=0.784  Sum_probs=25.9

Q ss_pred             ccchhcccCCCcceEEeecCCCCccccCC
Q 029636           64 LDWERCLDLQSGRMYYFNRKSSKKSWSLP   92 (190)
Q Consensus        64 sgWEq~LDlkSG~iYY~N~~T~~ssw~dP   92 (190)
                      +.|+++.|.. |++||+|..|++++|+.|
T Consensus         1 S~W~e~~~~~-G~~YYyN~~T~eS~We~P   28 (28)
T d1ywia1           1 SMWTEHKSPD-GRTYYYNTETKQSTWEKP   28 (28)
T ss_dssp             CCEEEEEETT-TEEEEEETTTTEEEESCC
T ss_pred             CccEEEECCC-CCEEEeECCCCCEecCCC
Confidence            4699999986 999999999999999988

>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Splicing factor prp40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.18  E-value=2.8e-07  Score=60.11  Aligned_cols=31  Identities=26%  Similarity=0.791  Sum_probs=28.1

Q ss_pred             ccchhcccCCCcceEEeecCCCCccccCCCcc
Q 029636           64 LDWERCLDLQSGRMYYFNRKSSKKSWSLPENK   95 (190)
Q Consensus        64 sgWEq~LDlkSG~iYY~N~~T~~ssw~dPr~~   95 (190)
                      .+|+.+.|.. |++||+|..|++++|+.|+.+
T Consensus        14 ~~W~e~~~~~-Gr~YYyN~~T~es~We~P~~~   44 (46)
T d1o6wa2          14 NGWKAAKTAD-GKVYYYNPTTRETSWTIPAFE   44 (46)
T ss_dssp             HTCEEEECTT-CCEEEEETTTTEEESSCCCCC
T ss_pred             CCCeEEECCC-CCEEEEECCCCCEecCCCccc
Confidence            4799999985 999999999999999999853

>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Splicing factor prp40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.18  E-value=2.8e-07  Score=55.09  Aligned_cols=28  Identities=36%  Similarity=0.884  Sum_probs=25.8

Q ss_pred             ccchhcccCCCcceEEeecCCCCccccCC
Q 029636           64 LDWERCLDLQSGRMYYFNRKSSKKSWSLP   92 (190)
Q Consensus        64 sgWEq~LDlkSG~iYY~N~~T~~ssw~dP   92 (190)
                      +.|+.+.+.. |++||+|..|++++|+.|
T Consensus         2 s~W~e~~~~~-G~~YYyN~~T~eS~WekP   29 (29)
T d1o6wa1           2 SIWKEAKDAS-GRIYYYNTLTKKSTWEKP   29 (29)
T ss_dssp             CCEEEEECTT-CCEEEEETTTTEEESSCC
T ss_pred             CccEEEECCC-CCEEEeECCCCCEecCCC
Confidence            4699999976 999999999999999988

>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: WW domain-binding protein 4, WBP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=8.2e-07  Score=55.75  Aligned_cols=29  Identities=28%  Similarity=0.688  Sum_probs=26.8

Q ss_pred             cchhcccCCCcceEEeecCCCCccccCCCc
Q 029636           65 DWERCLDLQSGRMYYFNRKSSKKSWSLPEN   94 (190)
Q Consensus        65 gWEq~LDlkSG~iYY~N~~T~~ssw~dPr~   94 (190)
                      .|.++.|. .|++||+|..|++++|+.|.+
T Consensus         2 ~W~e~~~~-~G~~YYyN~~T~eS~We~P~~   30 (38)
T d2dk1a1           2 RWVEGITS-EGYHYYYDLISGASQWEKPEG   30 (38)
T ss_dssp             CEEECCCS-TTCCCEEESSSCCEESSCCTT
T ss_pred             CCeEEECC-CCCEEEEECCCCCEecCCChh
Confidence            49999998 599999999999999999984

>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Amyloid beta A4 precursor protein-binding family B member 1, APBB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=2.5e-05  Score=47.66  Aligned_cols=31  Identities=32%  Similarity=0.788  Sum_probs=28.6

Q ss_pred             CCCccchhcccCCCcceEEeecCCCCccccCCC
Q 029636           61 PLPLDWERCLDLQSGRMYYFNRKSSKKSWSLPE   93 (190)
Q Consensus        61 PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~dPr   93 (190)
                      -||.||++.-|.. | +||..-.||+++|++|.
T Consensus         2 dLPpGW~ki~D~~-G-~YYWHiptGttQwe~P~   32 (33)
T d2ho2a1           2 DLPAGWMRVQDTS-G-TYYWHIPTGTTQWEPPG   32 (33)
T ss_dssp             CSCTTEEEEECSS-C-EEEEETTTTEEESSCCC
T ss_pred             CCCCcceeeecCC-C-ceEEEecCCcccccCCC
Confidence            4899999999986 7 99999999999999985

>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.73  E-value=0.0057  Score=36.52  Aligned_cols=18  Identities=17%  Similarity=0.366  Sum_probs=15.5

Q ss_pred             cCCceeeeccc---ccccCCC
Q 029636           32 SRKRKFLSDFS---LLKTEPA   49 (190)
Q Consensus        32 ~~~R~~~~~~~---t~W~~P~   49 (190)
                      ..+|.||.||.   |+|++|+
T Consensus        13 ~~G~~Yyinh~t~~T~w~~PR   33 (33)
T d2jmfa1          13 AAGERFFVDHNTRRTTFEDPR   33 (33)
T ss_dssp             TTSCEEEEETTTCCEESSCCC
T ss_pred             CCCCEEEEECCCCcEecCCCC
Confidence            46789999998   9999994

>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Mitotic rotamase PIN1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.36  E-value=0.019  Score=33.98  Aligned_cols=19  Identities=16%  Similarity=0.132  Sum_probs=16.6

Q ss_pred             CcCCceeeeccc---ccccCCC
Q 029636           31 PSRKRKFLSDFS---LLKTEPA   49 (190)
Q Consensus        31 ~~~~R~~~~~~~---t~W~~P~   49 (190)
                      +.++|.||.||.   |+|++|.
T Consensus        12 ~~~G~~YY~n~~T~~T~W~~Pt   33 (34)
T d1pina1          12 RSSGRVYYFNHITNASQWERPS   33 (34)
T ss_dssp             TTSCCEEEEETTTCCEESSCSC
T ss_pred             CCCCCEEEEECCCCCEEccCCC
Confidence            567999999988   9999995

>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Suppressor of deltex (Cg4244-pb)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.26  E-value=0.014  Score=36.84  Aligned_cols=19  Identities=16%  Similarity=0.293  Sum_probs=16.3

Q ss_pred             cCCceeeeccc---ccccCCCc
Q 029636           32 SRKRKFLSDFS---LLKTEPAI   50 (190)
Q Consensus        32 ~~~R~~~~~~~---t~W~~P~~   50 (190)
                      ..+|.||.||.   |+|++|+.
T Consensus        23 ~~G~~Yyinh~t~~T~w~~PR~   44 (45)
T d1tk7a1          23 SDNRVYFVNHKNRTTQWEDPRT   44 (45)
T ss_dssp             TTTEEEEEETTTTEEEEESCCC
T ss_pred             CCCCEEEEECCCCCEECCCCCc
Confidence            46799999998   99999964

>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Yap65 ww domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.03  E-value=0.025  Score=35.80  Aligned_cols=21  Identities=10%  Similarity=0.213  Sum_probs=17.2

Q ss_pred             cCCceeeeccc---ccccCCCccc
Q 029636           32 SRKRKFLSDFS---LLKTEPAIQT   52 (190)
Q Consensus        32 ~~~R~~~~~~~---t~W~~P~~~~   52 (190)
                      ..+|.||.||.   |+|++|+...
T Consensus        19 ~~G~~Yyinh~t~~T~w~~Pr~~~   42 (46)
T d1jmqa_          19 SSGQRYFKNHIDQTTTWQDPRKAM   42 (46)
T ss_dssp             SSCCCBEEETTTTEEESSCTTTSS
T ss_pred             CCCCEEEEECCCCCEecCCCCccc
Confidence            46888999988   9999996644

>d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.19  E-value=0.024  Score=35.05  Aligned_cols=30  Identities=23%  Similarity=0.612  Sum_probs=24.0

Q ss_pred             CCCCccchhcccCCCcceEEeecCCCCcccc
Q 029636           60 DPLPLDWERCLDLQSGRMYYFNRKSSKKSWS   90 (190)
Q Consensus        60 ~PLPsgWEq~LDlkSG~iYY~N~~T~~ssw~   90 (190)
                      ..+-.-||+++... .-.||+|+.|.++.|+
T Consensus         9 ~SV~~PWeRait~n-~VPYYINH~~e~T~WD   38 (38)
T d1eg3a3           9 TSVQGPWERAISPN-KVPYYINHETQTTCWD   38 (38)
T ss_dssp             TTCCTTEEEEECTT-SCEEEEETTTTEEESS
T ss_pred             cccccchhhhcccc-CCCeEeecccccccCC
Confidence            34444599999864 7779999999999996

>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.08  E-value=0.031  Score=35.89  Aligned_cols=20  Identities=15%  Similarity=0.300  Sum_probs=16.7

Q ss_pred             CcCCceeeeccc---ccccCCCc
Q 029636           31 PSRKRKFLSDFS---LLKTEPAI   50 (190)
Q Consensus        31 ~~~~R~~~~~~~---t~W~~P~~   50 (190)
                      ...+|.||.||.   |+|++|+.
T Consensus        21 ~~~G~~YY~nh~t~~T~w~~Pr~   43 (50)
T d1i5hw_          21 HTDGRVFFINHNIKKTQWEDPRM   43 (50)
T ss_dssp             CTTSCEEEEETTTTEEESSCTTT
T ss_pred             CCCCCEEEEECCCCCEeCCCCCC
Confidence            346899999998   99999964

>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Formin binding protein FBP28 domain
species: Domestic mouse (Mus musculus) [TaxId: 10090]

Probab=81.12  E-value=0.37  Score=28.87  Aligned_cols=19  Identities=5%  Similarity=0.064  Sum_probs=15.3

Q ss_pred             cCCceeeeccc---ccccCCCc
Q 029636           32 SRKRKFLSDFS---LLKTEPAI   50 (190)
Q Consensus        32 ~~~R~~~~~~~---t~W~~P~~   50 (190)
                      ..+|+||-|+.   ++|++|..
T Consensus        14 ~~Gr~YY~N~~T~~s~We~P~e   35 (37)
T d2rm0w1          14 ADGKTYYYNNRTLESTWEKPQE   35 (37)
T ss_dssp             TTCCEEEEETTTTEEESSCCSS
T ss_pred             CCCCEEEEECCCCCEeCCCccc
Confidence            46889988877   89999943