Citrus Sinensis ID: 029665

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
MVWLFMVNQASDKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNIGA
cEEEEEcccHHHcccccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHccccEEEcccccccccccccccEEEEEEEEcHHHHHHHHHHcccccccccccccccccccccccHHHHHHcccccccccccEEEEEEEEEEccccHHHHHHHccccccccccccHHHHHHHHHHHccEEEEcccccccc
cEEEEEHHHHHHHHccccccccEEEEEEEEEccccccHHHHHHHHHHHHHHccccEEEHcHEcHHHccccccccEEEEEEEccHHHHHHHHHHcccHHHEcccccccccccccccEcEEEcccccccccccEEEEEEEEEEcccccEHHHHHHHHccccccccccHHHHHHHHHHHccEEEEcccccccc
MVWLFMVNqasdkklsnpmreIKVQKLVLNISVGESGDRLTRAAKVLEQLsgqtpvfsKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRnfsdtgcfgfgIQEHIdlgikydpstgiygmDFFVVLerpgyrvgrrrrcksrvgiqhRVTKEDAMKWFQVKYEGVILNKSQNIGA
MVWLFMVNqasdkklsnpmreiKVQKLVLNISVGESGDRLTRAAKVLeqlsgqtpvfskarytvrsfgirrnekiaCYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLErpgyrvgrrrrcksrvgiqhrvtkedamkwfqVKYEgvilnksqniga
MVWLFMVNQASDKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLErpgyrvgrrrrcksrvgIQHRVTKEDAMKWFQVKYEGVILNKSQNIGA
**WLFMV**************IKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILN*******
MVWLFM***********PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRR***********VTKEDAMKWFQVKYEGVILNK******
MVWLFMVNQASDKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNIGA
MVWLFMVNQASDKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKS*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVWLFMVNQASDKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNIGA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query190 2.2.26 [Sep-21-2011]
P46287181 60S ribosomal protein L11 N/A no 0.942 0.988 0.977 1e-99
P42795182 60S ribosomal protein L11 yes no 0.942 0.983 0.955 3e-98
P42794182 60S ribosomal protein L11 yes no 0.942 0.983 0.955 4e-98
Q0DK10182 60S ribosomal protein L11 yes no 0.931 0.972 0.943 1e-95
A2YDY2182 60S ribosomal protein L11 N/A no 0.931 0.972 0.943 1e-95
Q10157174 60S ribosomal protein L11 yes no 0.905 0.988 0.726 1e-71
P46222184 60S ribosomal protein L11 yes no 0.878 0.907 0.766 1e-71
Q7RVN0174 60S ribosomal protein L11 N/A no 0.905 0.988 0.709 6e-71
Q758S7174 60S ribosomal protein L11 yes no 0.9 0.982 0.719 1e-70
P0C0W9174 60S ribosomal protein L11 yes no 0.9 0.982 0.730 3e-70
>sp|P46287|RL11_MEDSA 60S ribosomal protein L11 OS=Medicago sativa GN=RPL11 PE=2 SV=1 Back     alignment and function desciption
 Score =  361 bits (927), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 175/179 (97%), Positives = 178/179 (99%)

Query: 10  ASDKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 69
           AS+KKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI
Sbjct: 2   ASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 61

Query: 70  RRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 129
           RRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct: 62  RRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121

Query: 130 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 188
           TGIYGMDFFVVLERPGYRVGRRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ I
Sbjct: 122 TGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQAI 180
Binds to 5S ribosomal RNA.
Medicago sativa (taxid: 3879)
>sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 OS=Arabidopsis thaliana GN=RPL11A PE=1 SV=2 Back     alignment and function description
>sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 OS=Arabidopsis thaliana GN=RPL11B PE=2 SV=2 Back     alignment and function description
>sp|Q0DK10|RL11_ORYSJ 60S ribosomal protein L11 OS=Oryza sativa subsp. japonica GN=RPL11 PE=2 SV=1 Back     alignment and function description
>sp|A2YDY2|RL11_ORYSI 60S ribosomal protein L11 OS=Oryza sativa subsp. indica GN=RPL11 PE=2 SV=2 Back     alignment and function description
>sp|Q10157|RL11_SCHPO 60S ribosomal protein L11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl11a PE=1 SV=1 Back     alignment and function description
>sp|P46222|RL11_DROME 60S ribosomal protein L11 OS=Drosophila melanogaster GN=RpL11 PE=1 SV=2 Back     alignment and function description
>sp|Q7RVN0|RL11_NEUCR 60S ribosomal protein L11 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rpl-11 PE=3 SV=2 Back     alignment and function description
>sp|Q758S7|RL11_ASHGO 60S ribosomal protein L11 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPL11 PE=3 SV=1 Back     alignment and function description
>sp|P0C0W9|RL11A_YEAST 60S ribosomal protein L11-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL11A PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query190
255562456182 60S ribosomal protein L11, putative [Ric 0.952 0.994 0.977 2e-99
255538652182 60S ribosomal protein L11, putative [Ric 0.952 0.994 0.972 4e-99
351724995181 uncharacterized protein LOC100499863 [Gl 0.942 0.988 0.988 1e-98
356543128181 PREDICTED: 60S ribosomal protein L11-lik 0.942 0.988 0.988 1e-98
449432327184 PREDICTED: 60S ribosomal protein L11-2-l 0.947 0.978 0.972 4e-98
351725667181 uncharacterized protein LOC100305912 [Gl 0.942 0.988 0.983 4e-98
1173055181 RecName: Full=60S ribosomal protein L11; 0.942 0.988 0.977 6e-98
449433740181 PREDICTED: 60S ribosomal protein L11-1-l 0.942 0.988 0.972 1e-97
24817256181 ribosomal protein RL5 [Cicer arietinum] 0.942 0.988 0.972 1e-97
449432329182 PREDICTED: 60S ribosomal protein L11-2-l 0.942 0.983 0.972 2e-97
>gi|255562456|ref|XP_002522234.1| 60S ribosomal protein L11, putative [Ricinus communis] gi|223538487|gb|EEF40092.1| 60S ribosomal protein L11, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  366 bits (940), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 177/181 (97%), Positives = 180/181 (99%)

Query: 10  ASDKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 69
           AS+KKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI
Sbjct: 2   ASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 61

Query: 70  RRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 129
           RRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct: 62  RRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121

Query: 130 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNIG 189
           TGIYGMDF+VVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNK+Q IG
Sbjct: 122 TGIYGMDFYVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQTIG 181

Query: 190 A 190
           A
Sbjct: 182 A 182

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255538652|ref|XP_002510391.1| 60S ribosomal protein L11, putative [Ricinus communis] gi|223551092|gb|EEF52578.1| 60S ribosomal protein L11, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|351724995|ref|NP_001237077.1| uncharacterized protein LOC100499863 [Glycine max] gi|356517806|ref|XP_003527577.1| PREDICTED: 60S ribosomal protein L11-like [Glycine max] gi|356556759|ref|XP_003546690.1| PREDICTED: 60S ribosomal protein L11-like isoform 1 [Glycine max] gi|255627231|gb|ACU13960.1| unknown [Glycine max] gi|255648308|gb|ACU24606.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356543128|ref|XP_003540015.1| PREDICTED: 60S ribosomal protein L11-like [Glycine max] Back     alignment and taxonomy information
>gi|449432327|ref|XP_004133951.1| PREDICTED: 60S ribosomal protein L11-2-like isoform 1 [Cucumis sativus] gi|449515414|ref|XP_004164744.1| PREDICTED: 60S ribosomal protein L11-2-like isoform 1 [Cucumis sativus] Back     alignment and taxonomy information
>gi|351725667|ref|NP_001238636.1| uncharacterized protein LOC100305912 [Glycine max] gi|255626957|gb|ACU13823.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|1173055|sp|P46287.1|RL11_MEDSA RecName: Full=60S ribosomal protein L11; AltName: Full=L5 gi|463252|emb|CAA55090.1| RL5 ribosomal protein [Medicago sativa] Back     alignment and taxonomy information
>gi|449433740|ref|XP_004134655.1| PREDICTED: 60S ribosomal protein L11-1-like [Cucumis sativus] gi|449508584|ref|XP_004163354.1| PREDICTED: 60S ribosomal protein L11-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|24817256|emb|CAD56220.1| ribosomal protein RL5 [Cicer arietinum] Back     alignment and taxonomy information
>gi|449432329|ref|XP_004133952.1| PREDICTED: 60S ribosomal protein L11-2-like isoform 2 [Cucumis sativus] gi|449515416|ref|XP_004164745.1| PREDICTED: 60S ribosomal protein L11-2-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query190
TAIR|locus:2052432182 RPL16A "ribosomal protein larg 0.942 0.983 0.871 1.8e-78
TAIR|locus:2099024182 AT3G58700 [Arabidopsis thalian 0.942 0.983 0.871 1.8e-78
TAIR|locus:2124112182 RPL16B "ribosomal protein L16B 0.942 0.983 0.871 1.8e-78
TAIR|locus:505006673182 AT5G45775 [Arabidopsis thalian 0.942 0.983 0.871 1.8e-78
GENEDB_PFALCIPARUM|PF07_0079173 PF07_0079 "60S ribosomal prote 0.9 0.988 0.678 1.7e-59
UNIPROTKB|Q8IBQ6173 PF07_0079 "60S ribosomal prote 0.9 0.988 0.678 1.7e-59
ZFIN|ZDB-GENE-040625-147178 rpl11 "ribosomal protein L11" 0.921 0.983 0.683 1.7e-59
WB|WBGene00004423196 rpl-11.2 [Caenorhabditis elega 0.9 0.872 0.690 2.7e-59
FB|FBgn0013325184 RpL11 "Ribosomal protein L11" 0.878 0.907 0.712 4.5e-59
POMBASE|SPAC26A3.07c174 rpl1101 "60S ribosomal protein 0.905 0.988 0.668 7.3e-59
TAIR|locus:2052432 RPL16A "ribosomal protein large subunit 16A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
 Identities = 156/179 (87%), Positives = 162/179 (90%)

Query:    10 ASDKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 69
             AS+KKLSNPMR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFGI
Sbjct:     2 ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGI 61

Query:    70 RRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 129
             RRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct:    62 RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121

Query:   130 TGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNKSQNI 188
             TGIYGMDF+VVLE                 IQHRVTK+DAMKWFQVKYEGVILNKSQNI
Sbjct:   122 TGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005840 "ribosome" evidence=IEA
GO:0006412 "translation" evidence=IEA;ISS;TAS
GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS;IDA;TAS
GO:0009507 "chloroplast" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0005730 "nucleolus" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0001510 "RNA methylation" evidence=RCA
TAIR|locus:2099024 AT3G58700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124112 RPL16B "ribosomal protein L16B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006673 AT5G45775 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF07_0079 PF07_0079 "60S ribosomal protein L11a, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IBQ6 PF07_0079 "60S ribosomal protein L11a, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040625-147 rpl11 "ribosomal protein L11" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00004423 rpl-11.2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
FB|FBgn0013325 RpL11 "Ribosomal protein L11" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
POMBASE|SPAC26A3.07c rpl1101 "60S ribosomal protein L11 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8PV37RL5_METMANo assigned EC number0.40850.85780.9644yesno
Q9UX93RL5_SULSONo assigned EC number0.46540.83150.8681yesno
O26124RL5_METTHNo assigned EC number0.42940.85260.9642yesno
Q758S7RL11_ASHGONo assigned EC number0.71920.90.9827yesno
A9A9Q1RL5_METM6No assigned EC number0.44240.84730.8895yesno
Q2FT38RL5_METHJNo assigned EC number0.41350.84730.9583yesno
Q6LXE0RL5_METMPNo assigned EC number0.44570.85260.8950yesno
P54040RL5_METJANo assigned EC number0.47530.83150.8315yesno
O28367RL5_ARCFUNo assigned EC number0.50940.82630.8820yesno
O59431RL5_PYRHONo assigned EC number0.47230.85260.8617yesno
P62913RL11_HUMANNo assigned EC number0.72450.87890.9382yesno
P62914RL11_RATNo assigned EC number0.72450.87890.9382yesno
Q46GA8RL5_METBFNo assigned EC number0.41460.85780.9644yesno
Q3T087RL11_BOVINNo assigned EC number0.72450.87890.9382yesno
Q3E757RL11B_YEASTNo assigned EC number0.73090.90.9827yesno
P48157RL11_LEIMANo assigned EC number0.69940.91050.9202yesno
Q9CXW4RL11_MOUSENo assigned EC number0.72450.87890.9382yesno
Q12ZT8RL5_METBUNo assigned EC number0.45730.85780.9644yesno
A6VGZ8RL5_METM7No assigned EC number0.44840.84730.8895yesno
Q94300RL11_CAEELNo assigned EC number0.74260.90.8724nono
P46287RL11_MEDSANo assigned EC number0.97760.94210.9889N/Ano
Q29205RL11_PIGNo assigned EC number0.72280.87360.9325yesno
Q90YV7RL11_ICTPUNo assigned EC number0.70050.92100.9831N/Ano
Q9V1U9RL5_PYRABNo assigned EC number0.46010.85260.8617yesno
Q6FTK4RL11_CANGANo assigned EC number0.70760.90.9827yesno
P42922RL11_LEICHNo assigned EC number0.70520.91050.9202N/Ano
P46222RL11_DROMENo assigned EC number0.76640.87890.9076yesno
Q7RVN0RL11_NEUCRNo assigned EC number0.70930.90520.9885N/Ano
P16168RL11_DICDINo assigned EC number0.69230.88940.8366yesno
P0C0W9RL11A_YEASTNo assigned EC number0.73090.90.9827yesno
A4FWA8RL5_METM5No assigned EC number0.43030.84730.8895yesno
P50881RL11_CHLRENo assigned EC number0.72450.87890.9823N/Ano
Q10157RL11_SCHPONo assigned EC number0.72670.90520.9885yesno
A5UL75RL5_METS3No assigned EC number0.42160.84730.9470yesno
P14029RL5_METVANo assigned EC number0.44840.84730.8895yesno
Q5RC11RL11_PONABNo assigned EC number0.72450.87890.9382yesno
Q6QMZ8RL11_CHILANo assigned EC number0.72450.87890.9382N/Ano
Q8SSG9RL11_ENCCUNo assigned EC number0.64630.86310.9939yesno
P42794RL112_ARATHNo assigned EC number0.95530.94210.9835yesno
P42795RL111_ARATHNo assigned EC number0.95530.94210.9835yesno
Q8U012RL5_PYRFUNo assigned EC number0.46620.85260.8709yesno
Q74N79RL5_NANEQNo assigned EC number0.46290.83680.9408yesno
A2YDY2RL11_ORYSINo assigned EC number0.94350.93150.9725N/Ano
Q9YF87RL5_AERPENo assigned EC number0.45180.86310.8541yesno
P24119RL11_TETTHNo assigned EC number0.67250.89470.9883N/Ano
Q5JJG1RL5_PYRKONo assigned EC number0.48230.86840.9016yesno
Q0DK10RL11_ORYSJNo assigned EC number0.94350.93150.9725yesno
A6UQ57RL5_METVSNo assigned EC number0.44840.84730.8895yesno
Q962U2RL11_SPOFRNo assigned EC number0.69640.87890.8564N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query190
PTZ00156172 PTZ00156, PTZ00156, 60S ribosomal protein L11; Pro 1e-119
PRK04219177 PRK04219, rpl5p, 50S ribosomal protein L5P; Review 1e-79
COG0094180 COG0094, RplE, Ribosomal protein L5 [Translation, 4e-56
pfam0067395 pfam00673, Ribosomal_L5_C, ribosomal L5P family C- 9e-26
pfam0028156 pfam00281, Ribosomal_L5, Ribosomal protein L5 7e-18
PRK00010179 PRK00010, rplE, 50S ribosomal protein L5; Validate 6e-13
CHL00078181 CHL00078, rpl5, ribosomal protein L5 1e-07
>gnl|CDD|185485 PTZ00156, PTZ00156, 60S ribosomal protein L11; Provisional Back     alignment and domain information 
 Score =  333 bits (856), Expect = e-119
 Identities = 135/171 (78%), Positives = 155/171 (90%)

Query: 13  KKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRN 72
            K  NPMR+I+++KLVLNI VGESGDRLTRAAKVLEQL+GQ PVFSKARYTVRSFGIRRN
Sbjct: 2   SKKENPMRKIRIEKLVLNICVGESGDRLTRAAKVLEQLTGQKPVFSKARYTVRSFGIRRN 61

Query: 73  EKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGI 132
           EKIAC+VTVRGDKA ++LE GLKVKE+EL +RNFSDTG FGFGIQEHIDLGIKYDPSTGI
Sbjct: 62  EKIACHVTVRGDKAEEILERGLKVKEFELKKRNFSDTGNFGFGIQEHIDLGIKYDPSTGI 121

Query: 133 YGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILN 183
           YGMDF+VVL RPG+RV RR+R +S+VG  HRVTKE+AMKWF+  ++G+ILN
Sbjct: 122 YGMDFYVVLGRPGFRVARRKRKQSKVGKSHRVTKEEAMKWFKTTFDGIILN 172

Length = 172
>gnl|CDD|235259 PRK04219, rpl5p, 50S ribosomal protein L5P; Reviewed Back     alignment and domain information
>gnl|CDD|223172 COG0094, RplE, Ribosomal protein L5 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|201383 pfam00673, Ribosomal_L5_C, ribosomal L5P family C-terminus Back     alignment and domain information
>gnl|CDD|109342 pfam00281, Ribosomal_L5, Ribosomal protein L5 Back     alignment and domain information
>gnl|CDD|178791 PRK00010, rplE, 50S ribosomal protein L5; Validated Back     alignment and domain information
>gnl|CDD|214356 CHL00078, rpl5, ribosomal protein L5 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 190
PTZ00156172 60S ribosomal protein L11; Provisional 100.0
PRK04219177 rpl5p 50S ribosomal protein L5P; Reviewed 100.0
COG0094180 RplE Ribosomal protein L5 [Translation, ribosomal 100.0
KOG0397176 consensus 60S ribosomal protein L11 [Translation, 100.0
PRK00010179 rplE 50S ribosomal protein L5; Validated 100.0
CHL00078181 rpl5 ribosomal protein L5 100.0
KOG0398278 consensus Mitochondrial/chloroplast ribosomal prot 100.0
PF0067395 Ribosomal_L5_C: ribosomal L5P family C-terminus; I 99.96
PF0028156 Ribosomal_L5: Ribosomal protein L5; InterPro: IPR0 99.84
>PTZ00156 60S ribosomal protein L11; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.2e-72  Score=459.69  Aligned_cols=169  Identities=79%  Similarity=1.272  Sum_probs=166.8

Q ss_pred             cCCCCCceeeeEEEEEccCCchhHHHHHHHHHHHHhhCCCcEEEeeeecccCeeeeeCceEEEEEEEcchhHHHHHHHhh
Q 029665           15 LSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL   94 (190)
Q Consensus        15 ~~n~m~iP~I~KIvln~gvges~~~L~~a~~~L~~ITGQkP~~tkAKksia~FkiRkG~piG~kVTLRG~~my~FL~kli   94 (190)
                      .+|||++|+|+|||||+|+|++++.|+.|..+|++||||+|++|+||+||++||||+|+||||+|||||++||+||+||+
T Consensus         4 ~~n~m~~PkI~KIvvN~gvGe~~~~L~~a~~~L~~ITGQkPv~tkAKksia~FkiRkG~pIG~kVTLRg~~m~eFLdrli   83 (172)
T PTZ00156          4 KENPMRKIRIEKLVLNICVGESGDRLTRAAKVLEQLTGQKPVFSKARYTVRSFGIRRNEKIACHVTVRGDKAEEILERGL   83 (172)
T ss_pred             cCCCccCceeEEEEEEcCcCchHHHHHHHHHHHHHHcCCceEEEEhhcccccccccCCCEEEEEEEEchHHHHHHHHHHH
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCCCCCceeEEecccccccccccccCCCCccccEEEEEeecccceeeeeeeccCcCCCCcccChHHHHHHhH
Q 029665           95 KVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQ  174 (190)
Q Consensus        95 rirdf~l~~~sfD~~GN~sfGi~e~~~FEi~yd~~~~i~GmdItivt~a~g~r~a~r~~~~~~i~~~hri~~ee~~~~~~  174 (190)
                      ++|||+|+.++||++|||+|||+||++||++|||..+++||||+|++++||||+++|++++++||.+|||++|||++||+
T Consensus        84 rirDf~l~~~sFD~~GN~sfGI~e~i~fei~yD~~~~i~GmdI~ivl~rpG~rv~~R~~~~~~i~~~hrv~~eea~~~~~  163 (172)
T PTZ00156         84 KVKEFELKKRNFSDTGNFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLGRPGFRVARRKRKQSKVGKSHRVTKEEAMKWFK  163 (172)
T ss_pred             hhhcccccCcccCCCcccccCCchheeeceecCcccCcccCceEEEEeCCcceeeecccccccCCCCceeCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccEEEec
Q 029665          175 VKYEGVILN  183 (190)
Q Consensus       175 ~~~~~~v~~  183 (190)
                      ++|||+|++
T Consensus       164 ~~~~v~v~~  172 (172)
T PTZ00156        164 TTFDGIILN  172 (172)
T ss_pred             hhcCEEEcC
Confidence            999999975

>PRK04219 rpl5p 50S ribosomal protein L5P; Reviewed Back     alignment and domain information
>COG0094 RplE Ribosomal protein L5 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0397 consensus 60S ribosomal protein L11 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00010 rplE 50S ribosomal protein L5; Validated Back     alignment and domain information
>CHL00078 rpl5 ribosomal protein L5 Back     alignment and domain information
>KOG0398 consensus Mitochondrial/chloroplast ribosomal protein L5/L7 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00673 Ribosomal_L5_C: ribosomal L5P family C-terminus; InterPro: IPR002132 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF00281 Ribosomal_L5: Ribosomal protein L5; InterPro: IPR002132 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query190
3izr_E180 Localization Of The Large Subunit Ribosomal Protein 2e-82
2zkr_d178 Structure Of A Mammalian Ribosomal 60s Subunit With 5e-65
1s1i_J173 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 5e-62
3izs_E174 Localization Of The Large Subunit Ribosomal Protein 6e-62
3zf7_L194 High-resolution Cryo-electron Microscopy Structure 1e-61
2noq_H165 Structure Of Ribosome-Bound Cricket Paralysis Virus 3e-60
3jyw_J151 Structure Of The 60s Proteins For Eukaryotic Riboso 4e-56
4a17_D172 T.Thermophila 60s Ribosomal Subunit In Complex With 7e-56
3j21_E186 Promiscuous Behavior Of Proteins In Archaeal Riboso 8e-32
1s72_D177 Refined Crystal Structure Of The Haloarcula Marismo 3e-23
1ffk_D176 Crystal Structure Of The Large Ribosomal Subunit Fr 3e-23
3ow2_D165 Crystal Structure Of Enhanced Macrolide Bound To 50 3e-23
1iq4_A179 5s-Rrna Binding Ribosomal Protein L5 From Bacillus 6e-09
1vs6_F179 Crystal Structure Of The Bacterial Ribosome From Es 1e-08
1p85_D178 Real Space Refined Coordinates Of The 50s Subunit F 1e-08
2gya_D177 Structure Of The 50s Subunit Of A Pre-Translocation 1e-08
3ofr_F177 Crystal Structure Of The E. Coli Ribosome Bound To 1e-08
2j01_G182 Structure Of The Thermus Thermophilus 70s Ribosome 1e-08
1vsa_E182 Crystal Structure Of A 70s Ribosome-Trna Complex Re 1e-08
3mrz_F181 Recognition Of The Amber Stop Codon By Release Fact 2e-08
3fin_G181 T. Thermophilus 70s Ribosome In Complex With Mrna, 2e-08
1mji_A182 Detailed Analysis Of Rna-Protein Interactions Withi 8e-08
1nkw_D180 Crystal Structure Of The Large Ribosomal Subunit Fr 2e-07
1pnu_D178 Crystal Structure Of A Streptomycin Dependent Ribos 2e-07
>pdb|3IZR|E Chain E, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 180 Back     alignment and structure 
Iteration: 1

 Score =  301 bits (770), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 146/177 (82%), Positives = 155/177 (87%)
Query: 10  ASDKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 69
           +++KK  NPMR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGI
Sbjct: 2   STEKKQLNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGI 61
Query: 70  RRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 129
           RRNEKIACYVT+RG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLG+KYDPS
Sbjct: 62  RRNEKIACYVTIRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGMKYDPS 121
Query: 130 TGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNKSQ 186
           TGIYGMDFFVVLE                 I  RVTKEDAMKWFQVKYEGVILNKS 
Sbjct: 122 TGIYGMDFFVVLERAGYRVSRRRRCKARVGIHQRVTKEDAMKWFQVKYEGVILNKSH 178
>pdb|2ZKR|DD Chain d, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 178 Back     alignment and structure
>pdb|1S1I|J Chain J, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 173 Back     alignment and structure
>pdb|3IZS|E Chain E, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 174 Back     alignment and structure
>pdb|3ZF7|L Chain L, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 194 Back     alignment and structure
>pdb|2NOQ|H Chain H, Structure Of Ribosome-Bound Cricket Paralysis Virus Ires Rna Length = 165 Back     alignment and structure
>pdb|3JYW|J Chain J, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 151 Back     alignment and structure
>pdb|4A17|D Chain D, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 172 Back     alignment and structure
>pdb|3J21|E Chain E, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 186 Back     alignment and structure
>pdb|1S72|D Chain D, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 177 Back     alignment and structure
>pdb|1FFK|D Chain D, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 176 Back     alignment and structure
>pdb|3OW2|D Chain D, Crystal Structure Of Enhanced Macrolide Bound To 50s Ribosomal Subunit Length = 165 Back     alignment and structure
>pdb|1IQ4|A Chain A, 5s-Rrna Binding Ribosomal Protein L5 From Bacillus Stearothermophilus Length = 179 Back     alignment and structure
>pdb|1VS6|F Chain F, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 179 Back     alignment and structure
>pdb|1P85|D Chain D, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 178 Back     alignment and structure
>pdb|2GYA|D Chain D, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 177 Back     alignment and structure
>pdb|3OFR|F Chain F, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 50s Subunit Of The First 70s Ribosome With Erthromycin Bound. Length = 177 Back     alignment and structure
>pdb|2J01|G Chain G, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 182 Back     alignment and structure
>pdb|1VSA|E Chain E, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals Functional Interactions And Rearrangements. This File, 1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2ow8 Length = 182 Back     alignment and structure
>pdb|3MRZ|F Chain F, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3ms0. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (50s) And 3ms1 (30s). Length = 181 Back     alignment and structure
>pdb|3FIN|G Chain G, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit. Length = 181 Back     alignment and structure
>pdb|1MJI|A Chain A, Detailed Analysis Of Rna-Protein Interactions Within The Bacterial Ribosomal Protein L55S RRNA COMPLEX Length = 182 Back     alignment and structure
>pdb|1NKW|D Chain D, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 180 Back     alignment and structure
>pdb|1PNU|D Chain D, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 178 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query190
3iz5_e244 60S ribosomal protein L7 (L30P); eukaryotic riboso 1e-105
2zkr_d178 60S ribosomal protein L11; protein-RNA complex, 60 1e-104
4a17_D172 L21, RPL11, 60S ribosomal protein L11; eukaryotic 1e-103
1vq8_D177 50S ribosomal protein L5P; ribosome 50S, protein-p 2e-90
3r8s_F177 50S ribosomal protein L5; protein biosynthesis, RN 6e-14
1iq4_A179 50S ribosomal protein L5; rRNA-binding, RNP motif, 1e-13
1mji_A182 50S ribosomal protein L5; ribosomal protein - 5S r 2e-13
3bbo_H220 Ribosomal protein L5; large ribosomal subunit, spi 3e-13
>2zkr_d 60S ribosomal protein L11; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 178 Back     alignment and structure
>4a17_D L21, RPL11, 60S ribosomal protein L11; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_D 4a1c_D 4a1e_D Length = 172 Back     alignment and structure
>1vq8_D 50S ribosomal protein L5P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.77.1.1 PDB: 1vq4_D* 1vq5_D* 1vq6_D* 1vq7_D* 1s72_D* 1vq9_D* 1vqk_D* 1vql_D* 1vqm_D* 1vqn_D* 1vqo_D* 1vqp_D* 1yhq_D* 1yi2_D* 1yij_D* 1yit_D* 1yj9_D* 1yjn_D* 1yjw_D* 2otj_D* ... Length = 177 Back     alignment and structure
>3r8s_F 50S ribosomal protein L5; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3oat_F* 3ofc_F* 3ofz_F* 3ofr_F 3r8t_F 3i1n_F 1vs8_F 1vs6_F 1vt2_F 3i1p_F 3i1r_F 3i1t_F 3i20_F 3i22_F 3iyx_F 3iyy_F 3izt_G* 3izu_G* 3kcr_F 3orb_F* ... Length = 177 Back     alignment and structure
>1iq4_A 50S ribosomal protein L5; rRNA-binding, RNP motif, RNA binding PROT; 1.80A {Geobacillus stearothermophilus} SCOP: d.77.1.1 Length = 179 Back     alignment and structure
>1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus} SCOP: d.77.1.1 PDB: 2hgj_G 2hgq_G 2hgu_G 2j01_G 2j03_G 2jl6_G 2jl8_G 2v47_G 2v49_G 2wdi_G 2wdj_G 2wdl_G 2wdn_G 2wh2_G 2wh4_G 2wrj_G 2wrl_G 2wro_G 2wrr_G 2x9s_G ... Length = 182 Back     alignment and structure
>3bbo_H Ribosomal protein L5; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2 Length = 220 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 190
d1vqod1165 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon 4e-53
d2zjrd1177 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococc 3e-26
d1iq4a_179 d.77.1.1 (A:) Ribosomal protein L5 {Bacillus stear 3e-26
d1mjia_180 d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermo 2e-25
d2gycd1177 d.77.1.1 (D:2-178) Ribosomal protein L5 {Escherich 4e-20
>d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 165 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: RL5-like
superfamily: RL5-like
family: Ribosomal protein L5
domain: Ribosomal protein L5
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  165 bits (418), Expect = 4e-53
 Identities = 62/163 (38%), Positives = 98/163 (60%), Gaps = 3/163 (1%)

Query: 17  NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 76
           + MRE +++K+V+++ +G  G  L  A  +L +++GQ PV +KA+ TV  F IR  + I 
Sbjct: 2   HEMREPRIEKVVVHMGIGHGGRDLANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIG 61

Query: 77  CYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHID-LGIKYDPSTGIYGM 135
             VT+R + A + L++ L + E  L    F DTG F FG++EH +    +YDPS GIYG+
Sbjct: 62  AKVTLRDEMAEEFLQTALPLAE--LATSQFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGL 119

Query: 136 DFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYE 178
           D  V L RPGYRV +R +    +  +HR+   DA+ + +  Y+
Sbjct: 120 DVTVNLVRPGYRVAKRDKASRSIPTKHRLNPADAVAFIESTYD 162
>d2zjrd1 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococcus radiodurans [TaxId: 1299]} Length = 177 Back     information, alignment and structure
>d1iq4a_ d.77.1.1 (A:) Ribosomal protein L5 {Bacillus stearothermophilus [TaxId: 1422]} Length = 179 Back     information, alignment and structure
>d1mjia_ d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermophilus [TaxId: 274]} Length = 180 Back     information, alignment and structure
>d2gycd1 d.77.1.1 (D:2-178) Ribosomal protein L5 {Escherichia coli [TaxId: 562]} Length = 177 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query190
d1vqod1165 Ribosomal protein L5 {Archaeon Haloarcula marismor 100.0
d1mjia_180 Ribosomal protein L5 {Thermus thermophilus [TaxId: 100.0
d1iq4a_179 Ribosomal protein L5 {Bacillus stearothermophilus 100.0
d2zjrd1177 Ribosomal protein L5 {Deinococcus radiodurans [Tax 100.0
d2gycd1177 Ribosomal protein L5 {Escherichia coli [TaxId: 562 100.0
>d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: RL5-like
superfamily: RL5-like
family: Ribosomal protein L5
domain: Ribosomal protein L5
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=0  Score=374.56  Aligned_cols=163  Identities=38%  Similarity=0.723  Sum_probs=158.1

Q ss_pred             CCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCEEEEEEEECCHHHHHHHHHHHCC
Q ss_conf             98875033079997127701578999999998861998199865404567001318468799998635389999871043
Q 029665           17 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKV   96 (190)
Q Consensus        17 n~m~iP~ieKIvin~gvg~~~~~L~~a~~~L~~ITGQkP~~t~AKksi~~FkiRkG~piG~KVTLRg~~my~FL~kLiri   96 (190)
                      |||++|+|+|||||+|+|++++.+..+..+|+.||||+|++++||+++++||||+|+|+||+|||||++||+||++|+.+
T Consensus         2 n~M~vPki~KIvvn~Gvg~a~~~l~~a~~~L~~ITGQkP~~t~AKksia~FkiRkg~piG~kVTLRg~~m~~FL~rll~~   81 (165)
T d1vqod1           2 HEMREPRIEKVVVHMGIGHGGRDLANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIGAKVTLRDEMAEEFLQTALPL   81 (165)
T ss_dssp             CTTTSCEEEEEEEEEECCC-----CTTHHHHHHHHSSCCEEEECCSCBTTTBCCSSSEEEEEEEECTHHHHHHHHTTGGG
T ss_pred             CCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECHHHHHHHHHHHCC
T ss_conf             88777467799998898831787999999999876077420234332120021489847899997246689999998451


Q ss_pred             CCCCCCCCCCCCCEEEEECCCCCCCC-CCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             34332357889950378614332012-11006889734507999942264101101001476789831295877899676
Q 029665           97 KEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQV  175 (190)
Q Consensus        97 kdf~l~~~sfD~~GN~sFGi~e~~~F-Ei~yd~~~~i~Gm~Itivt~a~g~r~a~r~~~~~~i~~~h~i~~~e~~~~~~~  175 (190)
                      ..  ++.++||++|||||||+||++| |++||+..+++||||||+|+|+|||+|+|+.+...+|.+|++++|||++|+++
T Consensus        82 ~~--~~~k~FD~~GN~sfGi~e~~~FPei~~d~~~~i~Gm~Itivt~~~~~~~ak~~~~~~~ip~~~~i~kee~~~~~~~  159 (165)
T d1vqod1          82 AE--LATSQFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGLDVTVNLVRPGYRVAKRDKASRSIPTKHRLNPADAVAFIES  159 (165)
T ss_dssp             SC--CCSTTBCSSSCEEEC--------------------CEEEEEEECGGGGGGTSSTTCCCCCTTTSCCHHHHHHHHHT
T ss_pred             CC--CCCCCCCCCEEEEECCHHHEECCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf             34--7744638961688674140105654104566751435999956887499999999618985465799999999986


Q ss_pred             HCCEEE
Q ss_conf             435899
Q 029665          176 KYEGVI  181 (190)
Q Consensus       176 ~~~~~~  181 (190)
                      +|+|+|
T Consensus       160 ~~~~~~  165 (165)
T d1vqod1         160 TYDVEV  165 (165)
T ss_dssp             SSSCCC
T ss_pred             CCCCCC
T ss_conf             268769
>d1mjia_ d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1iq4a_ d.77.1.1 (A:) Ribosomal protein L5 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2zjrd1 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2gycd1 d.77.1.1 (D:2-178) Ribosomal protein L5 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure