Citrus Sinensis ID: 029670

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Protein Sequence
MSINIVVAMAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRFVYVLLLLAHHFEPFWG
Secondary Structure (PSIPRED)
cccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccEEEcccccccccccccHHccccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccHHccccEEEEccccccEEEccccccccHccccccccccccccHHHHHHHHHHHcccccccHHHHccccHHHHHHHHHHcEEcccccccccEccccccEEEEEEcccccccccccccc
Coil and Loop (DISEMBL)
MSINIVVAMAGLevhhsshqqfepmstsckadeifstpsyshladreflvteestnhngsteLLRKGFMEYGCQHYrrrcrirapccneifdcrhchneamnninvdqklrhdiprhevNQVICSLCGTEQKVQQVCVNCgvcmgeyfcescklfdddtskkqyhcdgcgICRFVYVLLLLAHHFEPFWG
Flexible Loop (DISEMBL)
MSINIVVAMAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTeestnhngstellrkgFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRFVYVLLLLAHHFEPFWG
Low Complexity Region (SEG)
MSINIVVAMAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRFVYVLLLLAHHFEPFWG
Disordered region (IsUnstruct)
****IVVAMAGL*****************************HLADREFLV**********TELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRFVYVLLLLAHHFEPFW*
Disordered Region (DISOPRED)
*********************************************************************EYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRFVYVLLLLAHHFEPFWG
Disordered Region (DISEMBL)
MSINIVVAMAGLEVHH***********SCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRFVYVLLLLAHHFEPFWG
Disordered Region (DISPRO)
*SINIVVAMAGLEVHHSS**************************************************MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRFVYVLLLLAHHFEPFWG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSINIVVAMAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRFVYVLLLLAHHFEPFWG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	190	2.2.26 [Sep-21-2011]
O14099	425	Uncharacterized RING fing	yes	no	0.6	0.268	0.390	1e-19
Q96PM5	261	RING finger and CHY zinc	yes	no	0.494	0.360	0.438	3e-17
Q9CR50	261	RING finger and CHY zinc	yes	no	0.484	0.352	0.436	3e-17

>sp|O14099|YERG_SCHPO Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=4 SV=1

 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/128 (39%), Positives = 69/128 (53%), Gaps = 14/128 (10%)

Query: 52  EESTNHNGSTELLRKGFME-----YGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINV 106
           +ES  +  S+  L K + +      GC HY R C+++   C+E + CRHCHN+A +    
Sbjct: 116 KESDENQLSSSDLEKTYYDKEQEILGCSHYMRNCKVQCFDCHEWYTCRHCHNDACD---- 171

Query: 107 DQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHC 166
                H + R  V  ++C +C   Q   Q C  C  CMG Y+C  CKL+DDD +K  YHC
Sbjct: 172 -----HVLERPAVENMLCMICSKVQPAAQYCKYCKNCMGRYYCNKCKLWDDDPNKSSYHC 226

Query: 167 DGCGICRF 174
           D CGICR 
Sbjct: 227 DDCGICRI 234

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 60/105 (57%), Gaps = 11/105 (10%)

Query: 70  EYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGT 129
           + GC+HY R C ++APCC++++ CR CH         D    H + R +V +V C  C  
Sbjct: 17  QRGCEHYDRGCLLKAPCCDKLYTCRLCH---------DNNEDHQLDRFKVKEVQCINCEK 67

Query: 130 EQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRF 174
            Q  QQ C  C    GEY+C+ C LFD D  KKQYHC+ CGICR 
Sbjct: 68  IQHAQQTCEECSTLFGEYYCDICHLFDKD--KKQYHCENCGICRI 110

Mediates E3-dependent ubiquitination and proteasomal degradation of target proteins, including p53/TP53, HDAC1 and CDKN1B. Preferentially acts on tetrameric p53/TP53. Contributes to the regulation of CDKN1B and p53/TP53 levels, and thereby contributes to the regulation of the cell cycle progression. Increases AR transcription factor activity.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9CR50|ZN363_MOUSE RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 59/103 (57%), Gaps = 11/103 (10%)

Query: 72  GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
           GC+HY R C ++APCC++++ CR CH         D    H + R +V +V C  C   Q
Sbjct: 19  GCEHYDRACLLKAPCCDKLYTCRLCH---------DTNEDHQLDRFKVKEVQCINCEKLQ 69

Query: 132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRF 174
             QQ C +C    GEY+C  C LFD D  K+QYHC+ CGICR 
Sbjct: 70  HAQQTCEDCSTLFGEYYCSICHLFDKD--KRQYHCESCGICRI 110

Mediates E3-dependent ubiquitination and proteasomal degradation of target proteins, including p53/TP53, HDAC1 and CDKN1B. Preferentially acts on tetrameric p53/TP53. Increases AR transcription factor activity (By similarity). Contributes to the regulation of CDKN1B and p53/TP53 levels, and thereby contributes to the regulation of the cell cycle progression.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
224092372	300	predicted protein [Populus trichocarpa]	0.710	0.45	0.772	9e-56
356563813	308	PREDICTED: RING finger and CHY zinc fing	0.868	0.535	0.642	6e-55
356552549	308	PREDICTED: RING finger and CHY zinc fing	0.868	0.535	0.654	8e-55
225430120	315	PREDICTED: RING finger and CHY zinc fing	0.873	0.526	0.619	1e-52
356515508	309	PREDICTED: RING finger and CHY zinc fing	0.842	0.517	0.621	2e-52
255635979	309	unknown [Glycine max]	0.842	0.517	0.621	2e-52
356552551	323	PREDICTED: RING finger and CHY zinc fing	0.868	0.510	0.6	8e-52
255634036	224	unknown [Glycine max]	0.842	0.714	0.615	1e-51
296081945	294	unnamed protein product [Vitis vinifera]	0.689	0.445	0.736	1e-51
217069830	200	unknown [Medicago truncatula]	0.842	0.8	0.591	7e-51

>gi|224092372|ref|XP_002309580.1| predicted protein [Populus trichocarpa] gi|118485648|gb|ABK94674.1| unknown [Populus trichocarpa] gi|222855556|gb|EEE93103.1| predicted protein [Populus trichocarpa]

 Score =  221 bits (564), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 105/136 (77%), Positives = 118/136 (86%), Gaps = 1/136 (0%)

Query: 39  SYSHLADREFLVTEESTNHNGSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHN 98
           S S   + +F+ +EES N   + ++L KG MEYGC HYRRRCRIRAPCCNE+FDCRHCHN
Sbjct: 22  SCSQHFNEDFIFSEESMNVE-TPQILDKGLMEYGCLHYRRRCRIRAPCCNEVFDCRHCHN 80

Query: 99  EAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDD 158
           EA NNINVDQK RHD+PRHEV QVICSLCGTEQ+VQQVC+NCGVCMG+YFCE+CKLFDDD
Sbjct: 81  EAKNNINVDQKHRHDMPRHEVKQVICSLCGTEQEVQQVCINCGVCMGKYFCETCKLFDDD 140

Query: 159 TSKKQYHCDGCGICRF 174
           TSKKQYHCDGCGICR 
Sbjct: 141 TSKKQYHCDGCGICRI 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563813|ref|XP_003550153.1| PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Glycine max]

 Score =  219 bits (557), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 106/165 (64%), Positives = 123/165 (74%)

Query: 9   MAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGF 68
           M  + V HS   QFE    S    E    P  S++       + +ST+H    +L  +G+
Sbjct: 1   MGEVAVMHSEPLQFECNDISVNMTEKEVYPPESNVERLPGEESSQSTDHKNINDLQERGY 60

Query: 69  MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCG 128
           MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEA N+IN+DQK RHDIPRH+V QVICSLCG
Sbjct: 61  MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDINIDQKHRHDIPRHQVKQVICSLCG 120

Query: 129 TEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICR 173
           TEQ+VQQ C+NCGVCMG+YFC +CKLFDDD SK+QYHC GCGICR
Sbjct: 121 TEQEVQQNCINCGVCMGKYFCGTCKLFDDDISKQQYHCSGCGICR 165

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552549|ref|XP_003544629.1| PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like isoform 1 [Glycine max]

 Score =  218 bits (555), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 108/165 (65%), Positives = 122/165 (73%)

Query: 9   MAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGF 68
           M  + V HS   QFE    +    E    P  S++       + +ST+H     L  KGF
Sbjct: 1   MGEVAVMHSEPLQFECNDITVNMTEKEVYPPESNVDHLPGEESSQSTDHKNINYLQEKGF 60

Query: 69  MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCG 128
           MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEA N+IN+D KLRHDIPRHEV QVICSLCG
Sbjct: 61  MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDINIDLKLRHDIPRHEVKQVICSLCG 120

Query: 129 TEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICR 173
           TEQ+VQQ C+NCGVCMG+YFC +CKLFDDD SK+QYHC GCGICR
Sbjct: 121 TEQEVQQNCINCGVCMGKYFCGTCKLFDDDISKQQYHCCGCGICR 165

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430120|ref|XP_002284652.1| PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Vitis vinifera] gi|147785653|emb|CAN68688.1| hypothetical protein VITISV_029477 [Vitis vinifera]

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/171 (61%), Positives = 127/171 (74%), Gaps = 5/171 (2%)

Query: 9   MAGLEVHHSSHQQFEPMSTS---CKADEIFSTPSYSHLADREFLVTEESTNHNGSTE--L 63
           M  +  +HS  Q FE  +        +E     S +  ++ E +  +E T+H   TE  L
Sbjct: 1   MTEMMANHSDSQHFELKNLKEMIFNVNERDVVKSCAQHSNGECMEIKEPTDHVEITEKEL 60

Query: 64  LRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVI 123
           L KG+M+YGC HYRRRCRIRAPCCNEIFDCRHCHNEA N+I VD+  RHDIPRH+V QVI
Sbjct: 61  LEKGYMQYGCPHYRRRCRIRAPCCNEIFDCRHCHNEAKNSIKVDKAQRHDIPRHQVQQVI 120

Query: 124 CSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRF 174
           CSLC TEQ+V+QVC+NCGVCMG+YFCE+CKLFDDDTSKKQYHC+GCGICR 
Sbjct: 121 CSLCNTEQEVRQVCINCGVCMGKYFCETCKLFDDDTSKKQYHCNGCGICRI 171

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515508|ref|XP_003526442.1| PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Glycine max]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/169 (62%), Positives = 125/169 (73%), Gaps = 9/169 (5%)

Query: 9   MAGLEVHHSSHQQFEPMSTSCK-ADEIFSTPSYSHLADREFLVTEEST---NHNGSTELL 64
           M  + V HS     EP+   C     I     Y+ L++ E ++ EES+   N     +L 
Sbjct: 1   MGEVAVMHS-----EPLQFDCNDMKHITEKDVYNLLSNEEHILGEESSQSSNDKKINDLR 55

Query: 65  RKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVIC 124
            +G+M+YGCQHYRRRCRIRAPCC+EIFDCRHCHNEA NNIN+DQK RHDIPRH+V QVIC
Sbjct: 56  ERGYMKYGCQHYRRRCRIRAPCCDEIFDCRHCHNEAKNNINIDQKHRHDIPRHQVKQVIC 115

Query: 125 SLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICR 173
           SLC TEQ+VQQ C+NCGVCMG+YFC +CKLFDDD SK+QYHC GCGICR
Sbjct: 116 SLCETEQEVQQNCINCGVCMGKYFCGTCKLFDDDVSKQQYHCSGCGICR 164

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255635979|gb|ACU18335.1| unknown [Glycine max]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/169 (62%), Positives = 125/169 (73%), Gaps = 9/169 (5%)

Query: 9   MAGLEVHHSSHQQFEPMSTSCK-ADEIFSTPSYSHLADREFLVTEEST---NHNGSTELL 64
           M  + V HS     EP+   C     I     Y+ L++ E ++ EES+   N     +L 
Sbjct: 1   MGEVAVMHS-----EPLQFDCNDMKHITEKDVYNLLSNEEHILGEESSQSSNDKKINDLR 55

Query: 65  RKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVIC 124
            +G+M+YGCQHYRRRCRIRAPCC+EIFDCRHCHNEA NNIN+DQK RHDIPRH+V QVIC
Sbjct: 56  ERGYMKYGCQHYRRRCRIRAPCCDEIFDCRHCHNEAKNNINIDQKHRHDIPRHQVKQVIC 115

Query: 125 SLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICR 173
           SLC TEQ+VQQ C+NCGVCMG+YFC +CKLFDDD SK+QYHC GCGICR
Sbjct: 116 SLCETEQEVQQNCINCGVCMGKYFCGTCKLFDDDVSKQQYHCSGCGICR 164

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552551|ref|XP_003544630.1| PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like isoform 2 [Glycine max]

 Score =  208 bits (530), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 108/180 (60%), Positives = 122/180 (67%), Gaps = 15/180 (8%)

Query: 9   MAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGF 68
           M  + V HS   QFE    +    E    P  S++       + +ST+H     L  KGF
Sbjct: 1   MGEVAVMHSEPLQFECNDITVNMTEKEVYPPESNVDHLPGEESSQSTDHKNINYLQEKGF 60

Query: 69  MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEV--------- 119
           MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEA N+IN+D KLRHDIPRHEV         
Sbjct: 61  MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDINIDLKLRHDIPRHEVKQVCLFILT 120

Query: 120 ------NQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICR 173
                  QVICSLCGTEQ+VQQ C+NCGVCMG+YFC +CKLFDDD SK+QYHC GCGICR
Sbjct: 121 FPIGISTQVICSLCGTEQEVQQNCINCGVCMGKYFCGTCKLFDDDISKQQYHCCGCGICR 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255634036|gb|ACU17380.1| unknown [Glycine max]

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 104/169 (61%), Positives = 124/169 (73%), Gaps = 9/169 (5%)

Query: 9   MAGLEVHHSSHQQFEPMSTSCK-ADEIFSTPSYSHLADREFLVTEEST---NHNGSTELL 64
           M  + V HS     EP+   C     I     Y+ L++ E ++ EES+   N     +L 
Sbjct: 1   MGEVAVMHS-----EPLQFDCNDMKHITEKDVYNLLSNEEHILGEESSQSSNDKKINDLR 55

Query: 65  RKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVIC 124
            +G+M+YGCQHYRRRCRIRAPCC+EIFDCRHCHNEA NNI +DQK RHDIPRH+V QVIC
Sbjct: 56  ERGYMKYGCQHYRRRCRIRAPCCDEIFDCRHCHNEAKNNITIDQKHRHDIPRHQVKQVIC 115

Query: 125 SLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICR 173
           SLC TEQ+VQQ C+NCGVCMG+YFC +CKLFDDD SK+QYHC GCGICR
Sbjct: 116 SLCETEQEVQQNCINCGVCMGKYFCGTCKLFDDDVSKQQYHCSGCGICR 164

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081945|emb|CBI20950.3| unnamed protein product [Vitis vinifera]

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 98/133 (73%), Positives = 114/133 (85%), Gaps = 2/133 (1%)

Query: 44  ADREFLVTEESTNHNGSTE--LLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAM 101
           ++ E +  +E T+H   TE  LL KG+M+YGC HYRRRCRIRAPCCNEIFDCRHCHNEA 
Sbjct: 18  SNGECMEIKEPTDHVEITEKELLEKGYMQYGCPHYRRRCRIRAPCCNEIFDCRHCHNEAK 77

Query: 102 NNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSK 161
           N+I VD+  RHDIPRH+V QVICSLC TEQ+V+QVC+NCGVCMG+YFCE+CKLFDDDTSK
Sbjct: 78  NSIKVDKAQRHDIPRHQVQQVICSLCNTEQEVRQVCINCGVCMGKYFCETCKLFDDDTSK 137

Query: 162 KQYHCDGCGICRF 174
           KQYHC+GCGICR 
Sbjct: 138 KQYHCNGCGICRI 150

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217069830|gb|ACJ83275.1| unknown [Medicago truncatula]

 Score =  205 bits (521), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 100/169 (59%), Positives = 122/169 (72%), Gaps = 9/169 (5%)

Query: 9   MAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLV----TEESTNHNGSTELL 64
           M  + V HS     EP+   C   ++ +     +L   E  +    + +S +H    +L 
Sbjct: 1   MGEVAVMHS-----EPLQFECNDRKLITEKDVHNLPSNEERMHGEKSSQSPDHKKINDLR 55

Query: 65  RKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVIC 124
            +G+MEYGCQHYRRRC IRAPCCNEIFDCRHCHNEA N+I++DQK RHDIPRH+V QVIC
Sbjct: 56  ERGYMEYGCQHYRRRCHIRAPCCNEIFDCRHCHNEAKNSIDIDQKHRHDIPRHQVKQVIC 115

Query: 125 SLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICR 173
           SLC TEQ+VQQ C+NCGVCMG+YFC +CKLFDDD SK+QYHC GCGICR
Sbjct: 116 SLCETEQEVQQNCINCGVCMGKYFCGTCKLFDDDVSKQQYHCSGCGICR 164

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
TAIR|locus:2179474	328	AT5G25560 [Arabidopsis thalian	0.831	0.481	0.605	2.7e-52
TAIR|locus:2172656	291	AT5G22920 [Arabidopsis thalian	0.636	0.415	0.661	8.8e-47
TAIR|locus:2099212	287	AT3G62970 [Arabidopsis thalian	0.557	0.369	0.644	2.6e-40
TAIR|locus:2180074	267	MIEL1 "MYB30-Interacting E3 Li	0.568	0.404	0.630	2.9e-39
FB|FBgn0031816	433	CG16947 [Drosophila melanogast	0.5	0.219	0.466	4.3e-24
DICTYBASE|DDB_G0281595	342	rchy "RING finger and CHY zinc	0.505	0.280	0.461	5.3e-24
ZFIN|ZDB-GENE-040801-73	264	rchy1 "ring finger and CHY zin	0.478	0.344	0.470	8.7e-24
POMBASE|SPAC2F3.16	425	SPAC2F3.16 "ubiquitin-protein	0.489	0.218	0.441	1.9e-23
UNIPROTKB|J3KQJ2	200	RCHY1 "RING finger and CHY zin	0.478	0.455	0.460	6.1e-23
UNIPROTKB|Q96PM5	261	RCHY1 "RING finger and CHY zin	0.478	0.348	0.460	6.1e-23

TAIR|locus:2179474 AT5G25560 [Arabidopsis thaliana (taxid:3702)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 103/170 (60%), Positives = 122/170 (71%)

Query:     9 MAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTE-----L 63
             M  +  +H + QQ + MS   K +   S  S+ H  + E   +E ST    + E     +
Sbjct:     1 MGDVYFNHFA-QQLQ-MSDQEKGE--MSRHSHPHSINEE---SESSTLERVAAESLTNKV 53

Query:    64 LRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVI 123
             L +G MEYGC HYRRRC IRAPCCNEIF C HCH EA NNINVDQK RHDIPRH+V QVI
Sbjct:    54 LDRGLMEYGCPHYRRRCCIRAPCCNEIFGCHHCHYEAKNNINVDQKQRHDIPRHQVEQVI 113

Query:   124 CSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICR 173
             C LCGTEQ+V Q+C++CGVCMG+YFC+ CKL+DDDTSKKQYHCDGCGICR
Sbjct:   114 CLLCGTEQEVGQICIHCGVCMGKYFCKVCKLYDDDTSKKQYHCDGCGICR 163

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2172656 AT5G22920 [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 80/121 (66%), Positives = 96/121 (79%)

Query:    53 ESTNHNGSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRH 112
             E+  +     L+  G   YGC HYRRRC+IRAPCC+EIFDCRHCHNEA ++++++Q  RH
Sbjct:     7 ENEQNQEFANLMEIGSGHYGCSHYRRRCKIRAPCCDEIFDCRHCHNEAKDSLHIEQHHRH 66

Query:   113 DIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGIC 172
             ++PRHEV++VICSLC TEQ VQQ C NCGVCMG+YFC  CK FDDD SKKQYHCD CGIC
Sbjct:    67 ELPRHEVSKVICSLCETEQDVQQNCSNCGVCMGKYFCSKCKFFDDDLSKKQYHCDECGIC 126

Query:   173 R 173
             R
Sbjct:   127 R 127

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2099212 AT3G62970 [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 69/107 (64%), Positives = 86/107 (80%)

Query:    67 GFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSL 126
             G  ++GC+HY+RRC+IRAPCCN IF CRHCHN++ N++  D K RHD+ R  V QV+CS+
Sbjct:    29 GKFQFGCEHYKRRCKIRAPCCNLIFSCRHCHNDSANSLP-DPKERHDLVRQNVKQVVCSI 87

Query:   127 CGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICR 173
             C TEQ+V +VC NCGV MGEYFC+ CK FDDD SK+Q+HCD CGICR
Sbjct:    88 CQTEQEVAKVCSNCGVNMGEYFCDICKFFDDDISKEQFHCDDCGICR 134

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2180074 MIEL1 "MYB30-Interacting E3 Ligase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 70/111 (63%), Positives = 85/111 (76%)

Query:    64 LRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNI-NVDQKLRHDIPRHEVNQV 122
             L  G M +GC+HY+RRC+IRAPCCNE+FDCRHCHNE+ + + N+    RHD+ R +V QV
Sbjct:     9 LHFGKMGFGCKHYKRRCQIRAPCCNEVFDCRHCHNESTSTLRNIYD--RHDLVRQDVKQV 66

Query:   123 ICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICR 173
             ICS+C TEQ   QVC NCGV MGEYFC  C  +DDDT K+Q+HCD CGICR
Sbjct:    67 ICSVCDTEQPAAQVCSNCGVNMGEYFCSICIFYDDDTEKQQFHCDDCGICR 117

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

FB|FBgn0031816 CG16947 [Drosophila melanogaster (taxid:7227)]

 Score = 278 (102.9 bits), Expect = 4.3e-24, P = 4.3e-24
 Identities = 49/105 (46%), Positives = 63/105 (60%)

Query:    69 MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCG 128
             + +GC HY+RR     PCCN+ + CR CH+E  N         H   R  + ++ICS C 
Sbjct:   180 LRFGCAHYKRRAMFVTPCCNKFYKCRFCHDE--NET-------HHFDRKTLTELICSECN 230

Query:   129 TEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICR 173
             T Q V++ C+NCGV  G+Y C  C LFDD   K+QYHC GCGICR
Sbjct:   231 TRQTVREQCLNCGVRFGKYTCLICNLFDD-ADKQQYHCHGCGICR 274

GO:0008270 "zinc ion binding" evidence=IEA

DICTYBASE|DDB_G0281595 rchy "RING finger and CHY zinc finger-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 48/104 (46%), Positives = 63/104 (60%)

Query:    72 GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
             GC+HY R C+I+A CC  I+ CR CH  A + +N     +H+I RH   +V+C  C T Q
Sbjct:    32 GCKHYARNCKIKAACCGRIYVCRLCH--ADDPVN----FKHEINRHATKEVLCMFCQTLQ 85

Query:   132 KVQQVCVN--CGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICR 173
              V + C+N  C      YFC+ CK +DD  +KK YHCD CGICR
Sbjct:    86 PVSKQCINNDCNKEFARYFCDVCKFYDDSPTKKIYHCDKCGICR 129

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-040801-73 rchy1 "ring finger and CHY zinc finger domain containing 1" [Danio rerio (taxid:7955)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 48/102 (47%), Positives = 63/102 (61%)

Query:    72 GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
             GC+HY R C ++APCC + + CR CH         D +  H + R +V +V C++C T Q
Sbjct:     7 GCEHYVRSCLLKAPCCGKFYVCRLCH---------DAEETHQMDRFKVQEVKCAVCNTIQ 57

Query:   132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICR 173
             + QQ+C  C V  GEY+C+ C LFD D  KKQYHC  CGICR
Sbjct:    58 EAQQICKECEVKFGEYYCDICHLFDKD--KKQYHCQPCGICR 97

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

POMBASE|SPAC2F3.16 SPAC2F3.16 "ubiquitin-protein ligase E3 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 272 (100.8 bits), Expect = 1.9e-23, P = 1.9e-23
 Identities = 45/102 (44%), Positives = 59/102 (57%)

Query:    72 GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
             GC HY R C+++   C+E + CRHCHN+A +         H + R  V  ++C +C   Q
Sbjct:   141 GCSHYMRNCKVQCFDCHEWYTCRHCHNDACD---------HVLERPAVENMLCMICSKVQ 191

Query:   132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICR 173
                Q C  C  CMG Y+C  CKL+DDD +K  YHCD CGICR
Sbjct:   192 PAAQYCKYCKNCMGRYYCNKCKLWDDDPNKSSYHCDDCGICR 233

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISM

GO:0005575 "cellular_component" evidence=ND

GO:0008270 "zinc ion binding" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=ISM

UNIPROTKB|J3KQJ2 RCHY1 "RING finger and CHY zinc finger domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 47/102 (46%), Positives = 61/102 (59%)

Query:    72 GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
             GC+HY R C ++APCC++++ CR CH+      N D    H + R +V +V C  C   Q
Sbjct:    19 GCEHYDRGCLLKAPCCDKLYTCRLCHDN-----NED----HQLDRFKVKEVQCINCEKIQ 69

Query:   132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICR 173
               QQ C  C    GEY+C+ C LFD D  KKQYHC+ CGICR
Sbjct:    70 HAQQTCEECSTLFGEYYCDICHLFDKD--KKQYHCENCGICR 109

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q96PM5 RCHY1 "RING finger and CHY zinc finger domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 47/102 (46%), Positives = 61/102 (59%)

Query:    72 GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
             GC+HY R C ++APCC++++ CR CH+      N D    H + R +V +V C  C   Q
Sbjct:    19 GCEHYDRGCLLKAPCCDKLYTCRLCHDN-----NED----HQLDRFKVKEVQCINCEKIQ 69

Query:   132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICR 173
               QQ C  C    GEY+C+ C LFD D  KKQYHC+ CGICR
Sbjct:    70 HAQQTCEECSTLFGEYYCDICHLFDKD--KKQYHCENCGICR 109

GO:0005102 "receptor binding" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0008270 "zinc ion binding" evidence=IDA

GO:0002039 "p53 binding" evidence=IPI

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0000151 "ubiquitin ligase complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0031398 "positive regulation of protein ubiquitination" evidence=IDA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	190
pfam05495	74	pfam05495, zf-CHY, CHY zinc finger	5e-21

>gnl|CDD|218608 pfam05495, zf-CHY, CHY zinc finger

 Score = 81.6 bits (202), Expect = 5e-21
 Identities = 38/85 (44%), Positives = 49/85 (57%), Gaps = 12/85 (14%)

Query: 73  CQHYRRR-CRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
           C+HY R  C IRAPCCN+ + CR CH+E  +         H + R  V  V+C +C TEQ
Sbjct: 1   CKHYHRNLCAIRAPCCNKYYPCRLCHDELED---------HPLDRWNVKAVLCGVCRTEQ 51

Query: 132 KVQQVCVNCGVCMGEYFCESCKLFD 156
            VQ+   NCGV   +Y+C  CKLF 
Sbjct: 52  TVQE--YNCGVEFADYYCPICKLFF 74

This family of domains are likely to bind to zinc ions. They contain many conserved cysteine and histidine residues. We have named this domain after the N-terminal motif CXHY. This domain can be found in isolation in some proteins, but is also often associated with pfam00097. One of the proteins in this family is a mitochondrial intermembrane space protein called Hot13. This protein is involved in the assembly of small TIM complexes. Length = 74

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	190
KOG1940	276	consensus Zn-finger protein [General function pred	99.92
PF05495	71	zf-CHY: CHY zinc finger; InterPro: IPR008913 Zinc	99.91
COG4357	105	Zinc finger domain containing protein (CHY type) [	99.77
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	94.94
PF12773	50	DZR: Double zinc ribbon	92.98
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	92.73
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	92.69
PRK04023	1121	DNA polymerase II large subunit; Validated	92.15
TIGR00595	505	priA primosomal protein N'. All proteins in this f	90.76
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	90.52
PRK14559	645	putative protein serine/threonine phosphatase; Pro	90.02
PRK14714	1337	DNA polymerase II large subunit; Provisional	88.61
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	87.95
PF13248	26	zf-ribbon_3: zinc-ribbon domain	87.9
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	86.21
COG1198	730	PriA Primosomal protein N' (replication factor Y)	86.19
PHA00626	59	hypothetical protein	86.06
PRK05580	679	primosome assembly protein PriA; Validated	84.86
PRK14873	665	primosome assembly protein PriA; Provisional	84.74
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	84.02
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	83.12
PRK14714	1337	DNA polymerase II large subunit; Provisional	82.05

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=99.92  E-value=4.9e-27  Score=206.82  Aligned_cols=108  Identities=53%  Similarity=1.101  Sum_probs=103.8

Q ss_pred             chhhccCCCccCccccccCcceecCCCCCcccCchhhhhccCCCCcCCcCcccCCccccceEecCCCCcccccccccccc
Q 029670           61 TELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNC  140 (190)
Q Consensus        61 ~~~~~~~~~~~gC~HY~R~c~LrcpCCgk~YpCr~CHDE~~~h~~~~~~~~H~ldR~~v~~ViCG~C~~eQ~~~~~C~nC  140 (190)
                      .++.+++.++++|.||+|++.+++|||.++|.|++||+++.         +|.++|+.+.+|+|+.|+++|++++.|.+|
T Consensus        23 ~~~~d~~~~~~~c~hy~r~~~~~a~ccd~~~~C~hCH~~s~---------~h~~~r~~v~~~~C~~C~~~q~~~~~c~~c   93 (276)
T KOG1940|consen   23 SDAEDEIAFPYGCPHYRRNCKSRAPCCDREITCRHCHNESE---------DHDLDRKTVYELLCMKCRKIQPVGQICSNC   93 (276)
T ss_pred             cccccccccccCCchhhhccccccccccceeeeEEecChhh---------hcccchhhhhhhhhhhHHhhhhhhhccccc
Confidence            47889999999999999999999999999999999999986         699999999999999999999999999999


Q ss_pred             cccccceecCcccCccCCCCCCeeecCCCCcccccCcc
Q 029670          141 GVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRFVYVL  178 (190)
Q Consensus       141 g~~FnkYfC~~Ckl~ddd~~K~~yHC~~CGICRvG~~l  178 (190)
                      +..+++|||.+|+|||++++ .||||+.|||||+|+++
T Consensus        94 ~~~~g~~~c~~C~l~dd~~~-~~~hC~~C~icr~g~~~  130 (276)
T KOG1940|consen   94 HVELGEYYCLICKLFDDDPS-KQYHCDLCGICREGLGL  130 (276)
T ss_pred             hhhhhhhcCccccccccccc-ceecccccccccccccc
Confidence            99999999999999999988 99999999999999887

>PF05495 zf-CHY: CHY zinc finger; InterPro: IPR008913 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.91  E-value=3.6e-25  Score=159.41  Aligned_cols=70  Identities=46%  Similarity=1.129  Sum_probs=52.7

Q ss_pred             ccccccC-cceecCCCCCcccCchhhhhccCCCCcCCcCcccCCccccceEecCCCCcccccccccccccccccceecCc
Q 029670           73 CQHYRRR-CRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCES  151 (190)
Q Consensus        73 C~HY~R~-c~LrcpCCgk~YpCr~CHDE~~~h~~~~~~~~H~ldR~~v~~ViCG~C~~eQ~~~~~C~nCg~~FnkYfC~~  151 (190)
                      |+||+|+ ++||||||++|||||+||||++         +|+++|+.+++|+||.|+++|++++.  +|+   ++|+|++
T Consensus         1 C~HY~~~~~~~~~~cC~~~y~C~~CHde~~---------~H~~~~~~~~~v~Cg~C~~~~~~~~~--~c~---~~~~C~~   66 (71)
T PF05495_consen    1 CKHYHRSLCAIRFPCCGKYYPCRFCHDELE---------DHPFDRWPVKRVICGKCRTEQPIDEY--SCG---ADYFCPI   66 (71)
T ss_dssp             -SS---S-EEEEETTTTEEESSHHHHHHCS---------SS---TTT--EEEETTT--EEES-SB--TT-----SEEETT
T ss_pred             CCCCCCCcEEEECCcccCeecHHHHHHHhc---------cCccccccccCeECCCCCCccChhhh--hcC---CCccCcC
Confidence            8999999 9999999999999999999986         49999999999999999999999876  777   9999999


Q ss_pred             ccCcc
Q 029670          152 CKLFD  156 (190)
Q Consensus       152 Ckl~d  156 (190)
                      |++||
T Consensus        67 C~~~~   71 (71)
T PF05495_consen   67 CGLYF   71 (71)
T ss_dssp             TTEEE
T ss_pred             cCCCC
Confidence            99985

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Pirh2 is an eukaryotic ubiquitin protein ligase, which has been shown to promote p53 degradation in mammals. Pirh2 physically interacts with p53 and promotes ubiquitination of p53 independently of MDM2. Like MDM2, Pirh2 is thought to participate in an autoregulatory feedback loop that controls p53 function. Pirh2 proteins contain three distinct zinc fingers, the CHY-type, the CTCHY-type which is C-terminal to the CHY-type zinc finger and a RING finger. The CHY-type zinc finger has no currently known function []. As well as Pirh2, the CHY-type zinc finger is also found in the following proteins: Yeast helper of Tim protein 13. Hot13 may have a role in the assembly and recycling of the small Tims, a complex of the mitochondrial intermembrane space that participates in the TIM22 import pathway for assembly of the inner membrane [] Several plant hypothetical proteins that also contain haemerythrin cation binding domains Several protozoan hypothetical proteins that also contain a Myb domain The solution structure of this zinc finger has been solved and binds 3 zinc atoms as shown in the following schematic representation: ++---------+-----+ || | | CXHYxxxxxxxxxCCxxxxxCxxCHxxxxxHxxxxxxxxxxxCxxCxxxxxxxxxCxxC | | | | | | | | +-+-----------------+--+ +--+---------+--+ 'C': conserved cysteine involved in the binding of one zinc atom. 'H': conserved histidine involved in the binding of one zinc atom. More information about these proteins can be found at Protein of the Month: Zinc Fingers []; GO: 0008270 zinc ion binding; PDB: 2DKT_A 2K2C_A.

>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]

Probab=99.77  E-value=6.6e-20  Score=141.27  Aligned_cols=77  Identities=23%  Similarity=0.604  Sum_probs=68.0

Q ss_pred             ccCccccccC---cceecCCCCCcccCchhhhhccCCCCcCCcCcccCCccccceEecCCCCcccccc-----ccccccc
Q 029670           70 EYGCQHYRRR---CRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQ-----QVCVNCG  141 (190)
Q Consensus        70 ~~gC~HY~R~---c~LrcpCCgk~YpCr~CHDE~~~h~~~~~~~~H~ldR~~v~~ViCG~C~~eQ~~~-----~~C~nCg  141 (190)
                      +.||.||++.   ++|||.||+|||||++||||+++|++    +.|+++....+.||||+|.++.+++     ..||+|.
T Consensus        12 etRC~Hyht~~Diialkc~~C~kyYaCy~CHdel~~Hpf----~p~~~~~~~~~~iiCGvC~~~LT~~EY~~~~~Cp~C~   87 (105)
T COG4357          12 ETRCLHYHTPLDIIALKCKCCQKYYACYHCHDELEDHPF----EPWGLQEFNPKAIICGVCRKLLTRAEYGMCGSCPYCQ   87 (105)
T ss_pred             cceeeEecCccceEeeeechhhhhhhHHHHHhHHhcCCC----ccCChhhcCCccEEhhhhhhhhhHHHHhhcCCCCCcC
Confidence            4699999997   67999999999999999999999884    6778887888999999999886653     6899999


Q ss_pred             ccccceecCcccC
Q 029670          142 VCMGEYFCESCKL  154 (190)
Q Consensus       142 ~~FnkYfC~~Ckl  154 (190)
                      ++||    |.|+.
T Consensus        88 spFN----p~Ck~   96 (105)
T COG4357          88 SPFN----PGCKN   96 (105)
T ss_pred             CCCC----ccccc
Confidence            9999    88875

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=94.94  E-value=0.018  Score=41.21  Aligned_cols=46  Identities=37%  Similarity=0.918  Sum_probs=30.4

Q ss_pred             ceEecCCCCcccc-----cccccccccccccceecCcccCccCCCCCCeeecCCCCc
Q 029670          120 NQVICSLCGTEQK-----VQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGI  171 (190)
Q Consensus       120 ~~ViCG~C~~eQ~-----~~~~C~nCg~~FnkYfC~~Ckl~ddd~~K~~yHC~~CGI  171 (190)
                      ....|..|+.+..     +.-.|||||... =|-|.+|+-+.     ..|.|++||+
T Consensus         6 ~~~~CtSCg~~i~~~~~~~~F~CPnCG~~~-I~RC~~CRk~~-----~~Y~CP~CGF   56 (59)
T PRK14890          6 EPPKCTSCGIEIAPREKAVKFLCPNCGEVI-IYRCEKCRKQS-----NPYTCPKCGF   56 (59)
T ss_pred             cCccccCCCCcccCCCccCEeeCCCCCCee-EeechhHHhcC-----CceECCCCCC
Confidence            4456888876532     224788888751 23488887664     3788888885

>PF12773 DZR: Double zinc ribbon

Probab=92.98  E-value=0.089  Score=34.52  Aligned_cols=22  Identities=32%  Similarity=0.845  Sum_probs=10.6

Q ss_pred             cCCCCccccc-cccccccccccc
Q 029670          124 CSLCGTEQKV-QQVCVNCGVCMG  145 (190)
Q Consensus       124 CG~C~~eQ~~-~~~C~nCg~~Fn  145 (190)
                      |..|+++.+. +..|++||+.+.
T Consensus         1 Cp~Cg~~~~~~~~fC~~CG~~l~   23 (50)
T PF12773_consen    1 CPHCGTPNPDDAKFCPHCGTPLP   23 (50)
T ss_pred             CCCcCCcCCccccCChhhcCChh
Confidence            3445444333 245555555554

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=92.73  E-value=0.063  Score=39.51  Aligned_cols=36  Identities=28%  Similarity=0.813  Sum_probs=22.5

Q ss_pred             ceEecCCCCcccccccccccccccc--------cceecCcccCc
Q 029670          120 NQVICSLCGTEQKVQQVCVNCGVCM--------GEYFCESCKLF  155 (190)
Q Consensus       120 ~~ViCG~C~~eQ~~~~~C~nCg~~F--------nkYfC~~Ckl~  155 (190)
                      ....|..|...-.....||.|+.++        +.|||..|+=.
T Consensus        16 ~~~~C~~C~~~~~~~a~CPdC~~~Le~LkACGAvdYFC~~c~gL   59 (70)
T PF07191_consen   16 GHYHCEACQKDYKKEAFCPDCGQPLEVLKACGAVDYFCNHCHGL   59 (70)
T ss_dssp             TEEEETTT--EEEEEEE-TTT-SB-EEEEETTEEEEE-TTTT-E
T ss_pred             CEEECccccccceecccCCCcccHHHHHHHhcccceeeccCCce
Confidence            5778888888766667888888665        57999999744

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=92.69  E-value=0.066  Score=38.58  Aligned_cols=45  Identities=33%  Similarity=0.883  Sum_probs=33.2

Q ss_pred             eEecCCCCccccc-----ccccccccccccceecCcccCccCCCCCCeeecCCCCc
Q 029670          121 QVICSLCGTEQKV-----QQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGI  171 (190)
Q Consensus       121 ~ViCG~C~~eQ~~-----~~~C~nCg~~FnkYfC~~Ckl~ddd~~K~~yHC~~CGI  171 (190)
                      ...|..|+.+-.+     .-.|||||...= |-|.+|+.+.+     +|-|++||+
T Consensus         9 ~~~CtSCg~~i~p~e~~v~F~CPnCGe~~I-~Rc~~CRk~g~-----~Y~Cp~CGF   58 (61)
T COG2888           9 PPVCTSCGREIAPGETAVKFPCPNCGEVEI-YRCAKCRKLGN-----PYRCPKCGF   58 (61)
T ss_pred             CceeccCCCEeccCCceeEeeCCCCCceee-ehhhhHHHcCC-----ceECCCcCc
Confidence            4578899877532     257999995543 56888887744     799999986

>PRK04023 DNA polymerase II large subunit; Validated

Probab=92.15  E-value=0.12  Score=53.85  Aligned_cols=46  Identities=28%  Similarity=0.707  Sum_probs=31.9

Q ss_pred             ceEecCCCCccccccccccccccc-ccceecCcccCccCCCCCCeeecCCCCc
Q 029670          120 NQVICSLCGTEQKVQQVCVNCGVC-MGEYFCESCKLFDDDTSKKQYHCDGCGI  171 (190)
Q Consensus       120 ~~ViCG~C~~eQ~~~~~C~nCg~~-FnkYfC~~Ckl~ddd~~K~~yHC~~CGI  171 (190)
                      ..-.|..|+++. +...||+||.. -..|||+.|.--     -..|.|++||.
T Consensus       625 g~RfCpsCG~~t-~~frCP~CG~~Te~i~fCP~CG~~-----~~~y~CPKCG~  671 (1121)
T PRK04023        625 GRRKCPSCGKET-FYRRCPFCGTHTEPVYRCPRCGIE-----VEEDECEKCGR  671 (1121)
T ss_pred             cCccCCCCCCcC-CcccCCCCCCCCCcceeCccccCc-----CCCCcCCCCCC
Confidence            345788888875 44688888864 667888888332     22477888885

>TIGR00595 priA primosomal protein N'

Probab=90.76  E-value=0.17  Score=48.05  Aligned_cols=49  Identities=20%  Similarity=0.611  Sum_probs=42.0

Q ss_pred             eecCCCCCcccCchhhhhccCCCCcCCcCcccCCccccceEecCCCCccccccccccccccc
Q 029670           82 IRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVC  143 (190)
Q Consensus        82 LrcpCCgk~YpCr~CHDE~~~h~~~~~~~~H~ldR~~v~~ViCG~C~~eQ~~~~~C~nCg~~  143 (190)
                      +.|.-||....|..|.-.+.-|.             ....+.|-.|+..+++...||+||..
T Consensus       214 ~~C~~Cg~~~~C~~C~~~l~~h~-------------~~~~l~Ch~Cg~~~~~~~~Cp~C~s~  262 (505)
T TIGR00595       214 LLCRSCGYILCCPNCDVSLTYHK-------------KEGKLRCHYCGYQEPIPKTCPQCGSE  262 (505)
T ss_pred             eEhhhCcCccCCCCCCCceEEec-------------CCCeEEcCCCcCcCCCCCCCCCCCCC
Confidence            79999999999999988776432             34689999999999999999999864

All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=90.52  E-value=0.15  Score=39.96  Aligned_cols=25  Identities=32%  Similarity=0.765  Sum_probs=19.8

Q ss_pred             cccccccccccceecCcccCccCCCCCCeeecCCCCc
Q 029670          135 QVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGI  171 (190)
Q Consensus       135 ~~C~nCg~~FnkYfC~~Ckl~ddd~~K~~yHC~~CGI  171 (190)
                      ..|++||+.|=            +++|.+..|++||.
T Consensus        10 R~Cp~CG~kFY------------DLnk~PivCP~CG~   34 (108)
T PF09538_consen   10 RTCPSCGAKFY------------DLNKDPIVCPKCGT   34 (108)
T ss_pred             ccCCCCcchhc------------cCCCCCccCCCCCC
Confidence            36888887664            67899999999994

The function of members of this family is unknown.

>PRK14559 putative protein serine/threonine phosphatase; Provisional

Probab=90.02  E-value=0.22  Score=49.22  Aligned_cols=46  Identities=28%  Similarity=0.731  Sum_probs=28.2

Q ss_pred             EecCCCCcccccc-cccccccccccceecCcccCccCCCCCCeeecCCCC
Q 029670          122 VICSLCGTEQKVQ-QVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCG  170 (190)
Q Consensus       122 ViCG~C~~eQ~~~-~~C~nCg~~FnkYfC~~Ckl~ddd~~K~~yHC~~CG  170 (190)
                      ++|..|+.+.+.. ..|++||..+..-.|+.|.---   ....-.|+.||
T Consensus         2 ~~Cp~Cg~~n~~~akFC~~CG~~l~~~~Cp~CG~~~---~~~~~fC~~CG   48 (645)
T PRK14559          2 LICPQCQFENPNNNRFCQKCGTSLTHKPCPQCGTEV---PVDEAHCPNCG   48 (645)
T ss_pred             CcCCCCCCcCCCCCccccccCCCCCCCcCCCCCCCC---CcccccccccC
Confidence            3577777765543 4677777777666677775431   23344677777

>PRK14714 DNA polymerase II large subunit; Provisional

Probab=88.61  E-value=0.45  Score=50.59  Aligned_cols=50  Identities=30%  Similarity=0.725  Sum_probs=36.7

Q ss_pred             ceEecCCCCcccccccccccccccc-cceecCcccCc-cCCCCCCeeecCCCCc
Q 029670          120 NQVICSLCGTEQKVQQVCVNCGVCM-GEYFCESCKLF-DDDTSKKQYHCDGCGI  171 (190)
Q Consensus       120 ~~ViCG~C~~eQ~~~~~C~nCg~~F-nkYfC~~Ckl~-ddd~~K~~yHC~~CGI  171 (190)
                      ....|..|+++-. ...|+.||... ..|+|+.|+.- ..+++. ...|+.||.
T Consensus       666 ~~rkCPkCG~~t~-~~fCP~CGs~te~vy~CPsCGaev~~des~-a~~CP~CGt  717 (1337)
T PRK14714        666 GRRRCPSCGTETY-ENRCPDCGTHTEPVYVCPDCGAEVPPDESG-RVECPRCDV  717 (1337)
T ss_pred             EEEECCCCCCccc-cccCcccCCcCCCceeCccCCCccCCCccc-cccCCCCCC
Confidence            3578999999743 35999999887 46789999764 223333 668999994

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=87.95  E-value=0.32  Score=29.28  Aligned_cols=24  Identities=29%  Similarity=0.746  Sum_probs=18.1

Q ss_pred             ecCCCCccccc-ccccccccccccc
Q 029670          123 ICSLCGTEQKV-QQVCVNCGVCMGE  146 (190)
Q Consensus       123 iCG~C~~eQ~~-~~~C~nCg~~Fnk  146 (190)
                      .|..|+.+-+. ...||+||..|.+
T Consensus         2 ~CP~C~~~V~~~~~~Cp~CG~~F~~   26 (26)
T PF10571_consen    2 TCPECGAEVPESAKFCPHCGYDFEA   26 (26)
T ss_pred             cCCCCcCCchhhcCcCCCCCCCCcC
Confidence            37788877554 4789999999863

Several members are annotated as putative helicases.

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=87.90  E-value=0.23  Score=29.41  Aligned_cols=24  Identities=33%  Similarity=0.908  Sum_probs=16.3

Q ss_pred             eEecCCCCccccc-ccccccccccc
Q 029670          121 QVICSLCGTEQKV-QQVCVNCGVCM  144 (190)
Q Consensus       121 ~ViCG~C~~eQ~~-~~~C~nCg~~F  144 (190)
                      .+.|..|+++-+. ...|++||+.+
T Consensus         2 ~~~Cp~Cg~~~~~~~~fC~~CG~~L   26 (26)
T PF13248_consen    2 EMFCPNCGAEIDPDAKFCPNCGAKL   26 (26)
T ss_pred             cCCCcccCCcCCcccccChhhCCCC
Confidence            3568888886443 36788888764

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=86.21  E-value=0.66  Score=33.25  Aligned_cols=35  Identities=23%  Similarity=0.579  Sum_probs=29.5

Q ss_pred             cceEecCCCCcccccccccccccccccceecCcccCc
Q 029670          119 VNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLF  155 (190)
Q Consensus       119 v~~ViCG~C~~eQ~~~~~C~nCg~~FnkYfC~~Ckl~  155 (190)
                      ...-.|..|+.+.-+  +|..|....|.|.|++|.|-
T Consensus        23 ~~~F~CPnCG~~~I~--RC~~CRk~~~~Y~CP~CGF~   57 (59)
T PRK14890         23 AVKFLCPNCGEVIIY--RCEKCRKQSNPYTCPKCGFE   57 (59)
T ss_pred             cCEeeCCCCCCeeEe--echhHHhcCCceECCCCCCc
Confidence            468889999875444  69999999999999999874

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]

Probab=86.19  E-value=0.63  Score=46.89  Aligned_cols=53  Identities=23%  Similarity=0.526  Sum_probs=44.5

Q ss_pred             eecCCCCCcccCchhhhhccCCCCcCCcCcccCCccccceEecCCCCcccccccccccccccccce
Q 029670           82 IRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEY  147 (190)
Q Consensus        82 LrcpCCgk~YpCr~CHDE~~~h~~~~~~~~H~ldR~~v~~ViCG~C~~eQ~~~~~C~nCg~~FnkY  147 (190)
                      +.|.-||..+-|..|=.-+.-|.             ....+.|-.|+.++++-..||+||...=+|
T Consensus       436 l~C~~Cg~v~~Cp~Cd~~lt~H~-------------~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~  488 (730)
T COG1198         436 LLCRDCGYIAECPNCDSPLTLHK-------------ATGQLRCHYCGYQEPIPQSCPECGSEHLRA  488 (730)
T ss_pred             eecccCCCcccCCCCCcceEEec-------------CCCeeEeCCCCCCCCCCCCCCCCCCCeeEE
Confidence            89999999999999987776433             347999999999999999999999874433

>PHA00626 hypothetical protein

Probab=86.06  E-value=0.57  Score=33.57  Aligned_cols=6  Identities=50%  Similarity=1.531  Sum_probs=3.2

Q ss_pred             cccccc
Q 029670          137 CVNCGV  142 (190)
Q Consensus       137 C~nCg~  142 (190)
                      ||+||.
T Consensus         3 CP~CGS    8 (59)
T PHA00626          3 CPKCGS    8 (59)
T ss_pred             CCCCCC
Confidence            555554

>PRK05580 primosome assembly protein PriA; Validated

Probab=84.86  E-value=0.62  Score=45.84  Aligned_cols=49  Identities=22%  Similarity=0.635  Sum_probs=41.8

Q ss_pred             eecCCCCCcccCchhhhhccCCCCcCCcCcccCCccccceEecCCCCccccccccccccccc
Q 029670           82 IRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVC  143 (190)
Q Consensus        82 LrcpCCgk~YpCr~CHDE~~~h~~~~~~~~H~ldR~~v~~ViCG~C~~eQ~~~~~C~nCg~~  143 (190)
                      +.|.-||...-|..|.-.+.-         |.    ..+.+.|-.|+..++....||+||..
T Consensus       382 ~~C~~Cg~~~~C~~C~~~l~~---------h~----~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~  430 (679)
T PRK05580        382 LLCRDCGWVAECPHCDASLTL---------HR----FQRRLRCHHCGYQEPIPKACPECGST  430 (679)
T ss_pred             eEhhhCcCccCCCCCCCceeE---------EC----CCCeEECCCCcCCCCCCCCCCCCcCC
Confidence            899999999999999987764         22    24689999999999988999999875

>PRK14873 primosome assembly protein PriA; Provisional

Probab=84.74  E-value=0.62  Score=46.18  Aligned_cols=48  Identities=23%  Similarity=0.499  Sum_probs=39.3

Q ss_pred             eecCCCCCcccCchhhhhccCCCCcCCcCcccCCccccceEecCCCCccccccccccccccc
Q 029670           82 IRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVC  143 (190)
Q Consensus        82 LrcpCCgk~YpCr~CHDE~~~h~~~~~~~~H~ldR~~v~~ViCG~C~~eQ~~~~~C~nCg~~  143 (190)
                      +.|.-||...-|..|.-.+.-         |.    ....+.|-.|+..+ ....||+||..
T Consensus       384 l~C~~Cg~~~~C~~C~~~L~~---------h~----~~~~l~Ch~CG~~~-~p~~Cp~Cgs~  431 (665)
T PRK14873        384 LACARCRTPARCRHCTGPLGL---------PS----AGGTPRCRWCGRAA-PDWRCPRCGSD  431 (665)
T ss_pred             eEhhhCcCeeECCCCCCceeE---------ec----CCCeeECCCCcCCC-cCccCCCCcCC
Confidence            899999999999999988763         21    23588999999876 46799999865

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=84.02  E-value=0.59  Score=38.10  Aligned_cols=25  Identities=20%  Similarity=0.296  Sum_probs=19.6

Q ss_pred             cccccccccccceecCcccCccCCCCCCeeecCCCCc
Q 029670          135 QVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGI  171 (190)
Q Consensus       135 ~~C~nCg~~FnkYfC~~Ckl~ddd~~K~~yHC~~CGI  171 (190)
                      ..||+||+.|=            +++|.+..|++||.
T Consensus        10 r~Cp~cg~kFY------------DLnk~p~vcP~cg~   34 (129)
T TIGR02300        10 RICPNTGSKFY------------DLNRRPAVSPYTGE   34 (129)
T ss_pred             ccCCCcCcccc------------ccCCCCccCCCcCC
Confidence            35888877664            67899999999995

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=83.12  E-value=0.6  Score=27.20  Aligned_cols=21  Identities=38%  Similarity=0.956  Sum_probs=13.8

Q ss_pred             cCCCCccccc-ccccccccccc
Q 029670          124 CSLCGTEQKV-QQVCVNCGVCM  144 (190)
Q Consensus       124 CG~C~~eQ~~-~~~C~nCg~~F  144 (190)
                      |..|+++.+. +..|++||+.+
T Consensus         2 Cp~CG~~~~~~~~fC~~CG~~l   23 (23)
T PF13240_consen    2 CPNCGAEIEDDAKFCPNCGTPL   23 (23)
T ss_pred             CcccCCCCCCcCcchhhhCCcC
Confidence            6677776443 46788888754

>PRK14714 DNA polymerase II large subunit; Provisional

Probab=82.05  E-value=0.88  Score=48.52  Aligned_cols=33  Identities=30%  Similarity=0.754  Sum_probs=27.4

Q ss_pred             cccccccccccceecCcccCccCCCCCCeeecCCCCc
Q 029670          135 QVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGI  171 (190)
Q Consensus       135 ~~C~nCg~~FnkYfC~~Ckl~ddd~~K~~yHC~~CGI  171 (190)
                      -.||+||..-...||+.|.-.    .+.+|+|+.||.
T Consensus       668 rkCPkCG~~t~~~fCP~CGs~----te~vy~CPsCGa  700 (1337)
T PRK14714        668 RRCPSCGTETYENRCPDCGTH----TEPVYVCPDCGA  700 (1337)
T ss_pred             EECCCCCCccccccCcccCCc----CCCceeCccCCC
Confidence            589999988767799999754    356899999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	190
2k2c_A	137	Solution Nmr Structure Of N-Terminal Domain Of Huma		8e-18
2dkt_A	143	Solution Structure Of The Chy Zinc Finger Domain Of		1e-17

>pdb|2K2C|A Chain A, Solution Nmr Structure Of N-Terminal Domain Of Human Pirh2. Northeast Structural Genomics Consortium (Nesg) Target Ht2a Length = 137

Iteration: 1
 Score = 86.3 bits (212), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 59/103 (57%), Gaps = 11/103 (10%)
Query: 72  GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
           GC+HY R C ++APCC++++ CR CH         D    H + R +V +V C  C   Q
Sbjct: 19  GCEHYDRGCLLKAPCCDKLYTCRLCH---------DNNEDHQLDRFKVKEVQCINCEKIQ 69
Query: 132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRF 174
             QQ C  C    GEY+C+ C LFD D  KKQYHC+ CGICR 
Sbjct: 70  HAQQTCEECSTLFGEYYCDICHLFDKD--KKQYHCENCGICRI 110

>pdb|2DKT|A Chain A, Solution Structure Of The Chy Zinc Finger Domain Of The Ring Finger And Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus Length = 143

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 59/103 (57%), Gaps = 11/103 (10%)
Query: 72  GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
           GC+HY R C ++APCC++++ CR CH         D    H + R +V +V C  C   Q
Sbjct: 18  GCEHYDRACLLKAPCCDKLYTCRLCH---------DTNEDHQLDRFKVKEVQCINCEKLQ 68
Query: 132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRF 174
             QQ C +C    GEY+C  C LFD D  K+QYHC+ CGICR 
Sbjct: 69  HAQQTCEDCSTLFGEYYCSICHLFDKD--KRQYHCESCGICRI 109

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	190
2dkt_A	143	Ring finger and CHY zinc finger domain- containing	4e-31

>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A Length = 143

 Score =  109 bits (273), Expect = 4e-31
 Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 11/105 (10%)

Query: 69  MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCG 128
              GC+HY R C ++APCC++++ CR CH+   +         H + R +V +V C  C 
Sbjct: 15  GPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNED---------HQLDRFKVKEVQCINCE 65

Query: 129 TEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICR 173
             Q  QQ C +C    GEY+C  C LFD D  K+QYHC+ CGICR
Sbjct: 66  KLQHAQQTCEDCSTLFGEYYCSICHLFDKD--KRQYHCESCGICR 108

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	190
d2dkta1	74	g.89.1.1 (A:8-81) RING finger and CHY zinc finger	2e-14
d2dkta2	56	g.93.1.1 (A:82-137) RING finger and CHY zinc finge	5e-08

>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: Small proteins
fold: CHY zinc finger-like
superfamily: CHY zinc finger-like
family: CHY zinc finger
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.8 bits (152), Expect = 2e-14
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 9/72 (12%)

Query: 71  YGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTE 130
            GC+HY R C ++APCC++++ CR CH+             H + R +V +V C  C   
Sbjct: 10  RGCEHYDRACLLKAPCCDKLYTCRLCHDTNE---------DHQLDRFKVKEVQCINCEKL 60

Query: 131 QKVQQVCVNCGV 142
           Q  QQ C +C  
Sbjct: 61  QHAQQTCEDCST 72

>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 56

class: Small proteins
fold: Zinc hairpin stack
superfamily: Zinc hairpin stack
family: Zinc hairpin stack
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.8 bits (109), Expect = 5e-08
 Identities = 19/29 (65%), Positives = 22/29 (75%), Gaps = 2/29 (6%)

Query: 145 GEYFCESCKLFDDDTSKKQYHCDGCGICR 173
           GEY+C  C LFD D  K+QYHC+ CGICR
Sbjct: 1   GEYYCSICHLFDKD--KRQYHCESCGICR 27

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	190
d2dkta1	74	RING finger and CHY zinc finger domain-containing	99.67
d2dkta2	56	RING finger and CHY zinc finger domain-containing	99.43
d2dkta2	56	RING finger and CHY zinc finger domain-containing	89.89

>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CHY zinc finger-like
superfamily: CHY zinc finger-like
family: CHY zinc finger
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=2.5e-17  Score=113.78  Aligned_cols=73  Identities=34%  Similarity=0.866  Sum_probs=67.9

Q ss_pred             HHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             11157774576454468413648789812681155310279786776766589666563764788953201235654443
Q 029670           63 LLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGV  142 (190)
Q Consensus        63 ~~~~~~~~~gC~HY~R~c~ir~pCCgk~YpCr~CHDE~~~h~~~~~~~~H~ldR~~v~~ViCG~C~~eQ~~~~~C~nCg~  142 (190)
                      ++++....+||+||+|+++|+|++||++|+|+.||+++..         |.++|+.++.++|..|+++|++...|++||+
T Consensus         2 ~~~~~~~~~gC~HY~r~~~l~C~~Cg~~~~C~~C~~~lt~---------H~~~~k~~~~l~CH~Cg~~~~~~~~C~~Cgs   72 (74)
T d2dkta1           2 VRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNED---------HQLDRFKVKEVQCINCEKLQHAQQTCEDCST   72 (74)
T ss_dssp             CCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTSS---------SCCCSSSCCCEEESSSCCEECSCSBCSSSCC
T ss_pred             CCCCCCCCCCCCCCCCCEEEECCCCCCEEECCCCCCCCCC---------CCCCCCCCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf             6677888878736676668883869396218988875120---------3435246887983567974437884878788


Q ss_pred             CC
Q ss_conf             34
Q 029670          143 CM  144 (190)
Q Consensus       143 ~F  144 (190)
                      .|
T Consensus        73 ~F   74 (74)
T d2dkta1          73 LF   74 (74)
T ss_dssp             BS
T ss_pred             CC
T ss_conf             79

>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Zinc hairpin stack
superfamily: Zinc hairpin stack
family: Zinc hairpin stack
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=1.5e-14  Score=98.19  Aligned_cols=34  Identities=53%  Similarity=1.226  Sum_probs=30.6

Q ss_pred             CCEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf             412168655745899999220599996300573123
Q 029670          145 GEYFCESCKLFDDDTSKKQYHCDGCGICRFVYVLLL  180 (190)
Q Consensus       145 nkYfC~iCklfdd~~~K~~yHC~~CGICRvG~~l~~  180 (190)
                      ++|||+|||||||  +|++|||++|||||||+++..
T Consensus         1 G~YfC~iC~l~dd--dk~~yHC~~CgiCRvG~~~~f   34 (56)
T d2dkta2           1 GEYYCSICHLFDK--DKRQYHCESCGICRIGPKEDF   34 (56)
T ss_dssp             CSEECSSSCCEEC--SSSEEEETTTTEEEESCGGGE
T ss_pred             CCEECCCCCCCCC--CCCCCCCCCCCCEEECCCCCC
T ss_conf             9657873775468--887665999980023588664

>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Zinc hairpin stack
superfamily: Zinc hairpin stack
family: Zinc hairpin stack
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.89  E-value=0.035  Score=29.00  Aligned_cols=30  Identities=30%  Similarity=0.808  Sum_probs=21.1

Q ss_pred             CCEECCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf             412168655745899999220599996300
Q 029670          145 GEYFCESCKLFDDDTSKKQYHCDGCGICRF  174 (190)
Q Consensus       145 nkYfC~iCklfdd~~~K~~yHC~~CGICRv  174 (190)
                      ..|.|+.|++=.-...++.|||+.|++|-.
T Consensus        16 ~~yHC~~CgiCRvG~~~~ffHC~~C~~C~~   45 (56)
T d2dkta2          16 RQYHCESCGICRIGPKEDFFHCLKCNLCLT   45 (56)
T ss_dssp             SEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred             CCCCCCCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf             766599998002358866432672546437