Citrus Sinensis ID: 029733

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MAHQRQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVHYVHSTISYRSTWGNVTPKPSISIYEREKYLCKFLCWPPFQLLQCCPGCICDVSICLDQTLLTYAQATGFKTG
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccHHHccccccEEEccEEEEccHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHEEEEEEEcccHHHcccccEEEEEEEEEEEEEEccHHHHEHHccHccccccccEEEEEccHHHHHHEEcccccHHccccccHEEEEEEEHccHHHHHHccccccc
Coil and Loop (DISEMBL)
MAHQRQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAvgilpsgvwlpfmqwcgRTLFFLVTACEivqvqdhpsLFITFLAWCLIEVHYVHSTISyrstwgnvtpkpsisIYEREKYLCKflcwppfqllqccpgcicdvsicldQTLLTYAQATGFKTG
Flexible Loop (DISEMBL)
MAHQRQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVHYVHSTisyrstwgnvtpKPSISIYEREKYLCKFLCWPPFQLLQCCPGCICDVSICLDQTLLTYAQATGFKTG
Low Complexity Region (SEG)
MAHQRQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVHYVHSTISYRSTWGNVTPKPSISIYEREKYLCKFLCWPPFQLLQCCPGCICDVSICLDQTLLTYAQATGFKTG
Disordered region (IsUnstruct)
*******IKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVHYVHSTISYRSTWGNVTPKPSISIYEREKYLCKFLCWPPFQLLQCCPGCICDVSICLDQTLLTYAQAT*****
Disordered Region (DISOPRED)
******P***YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVHYVHSTISYRSTWGNVTPKPSISIYEREKYLCKFLCWPPFQLLQCCPGCICDVSICLDQTLLTYAQATGF***
Disordered Region (DISEMBL)
MAHQRQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVHYVHSTISYRSTWGNVTPKPSISIYEREKYLCKFLCWPPFQLLQCCPGCICDVSICLDQTLLTYAQATGFKTG
Disordered Region (DISPRO)
****RQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVHYVHSTISYRSTWGNVTPKPSISIYEREKYLCKFLCWPPFQLLQCCPGCICDVSICLDQTLLTYAQAT*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAHQRQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVHYVHSTISYRSTWGNVTPKPSISIYEREKYLCKFLCWPPFQLLQCCPGCICDVSICLDQTLLTYAQATGFKTG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	189	2.2.26 [Sep-21-2011]
Q7SY06	359	Very-long-chain (3R)-3-hy	yes	no	0.571	0.300	0.309	2e-08
Q2KIP8	254	Very-long-chain (3R)-3-hy	yes	no	0.560	0.417	0.311	5e-08
Q5RBK3	255	Very-long-chain (3R)-3-hy	yes	no	0.560	0.415	0.311	1e-07
Q6Y1H2	254	Very-long-chain (3R)-3-hy	yes	no	0.560	0.417	0.311	1e-07
Q9D3B1	254	Very-long-chain (3R)-3-hy	yes	no	0.560	0.417	0.311	1e-07
Q8K2C9	362	Very-long-chain (3R)-3-hy	no	no	0.571	0.298	0.263	2e-06
Q9P035	362	Very-long-chain (3R)-3-hy	no	no	0.571	0.298	0.272	5e-06
Q5NVQ2	364	Very-long-chain (3R)-3-hy	no	no	0.571	0.296	0.272	5e-06
Q9N1R5	288	Very-long-chain (3R)-3-hy	N/A	no	0.539	0.354	0.264	1e-05
Q9QY80	281	Very-long-chain (3R)-3-hy	no	no	0.539	0.362	0.264	2e-05

>sp|Q7SY06|HADC_DANRE Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase OS=Danio rerio GN=ptplad1 PE=2 SV=2

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 2/110 (1%)

Query: 9   KLYLFGYNSLQAAG--WIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGA 66
           K +LF YN +Q  G  WI     +   +L   S   TF +  ++++  Q  A +EV++ A
Sbjct: 144 KGFLFMYNLVQFLGYSWIFVNMTVRLFILGQDSFYDTFHTIADVMYFCQMLAIMEVINPA 203

Query: 67  VGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
           VG++ +GV   F+Q  GR     V    +  +Q+ P +F  F  W  IE+
Sbjct: 204 VGLVKTGVMPAFIQVMGRNFILFVIFGSLEDMQNKPVVFFVFYLWSTIEI 253

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis. Involved in Rac1-signaling pathways leading to the modulation of gene expression.
Danio rerio (taxid: 7955)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q2KIP8|HACD2_BOVIN Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 2 OS=Bos taurus GN=PTPLB PE=2 SV=2

 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 52/106 (49%)

Query: 11  YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
           YL  YN +  AGW+V    L+   L+  S    + S  + +   QT A LE++H A+GI+
Sbjct: 41  YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIV 100

Query: 71  PSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
           PS V L  +Q   R          + +VQ   S+ +  +AW + E+
Sbjct: 101 PSSVVLTSIQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEI 146

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis.

Bos taurus (taxid: 9913)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q5RBK3|HACD2_PONAB Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 2 OS=Pongo abelii GN=PTPLB PE=2 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%)

Query: 11  YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
           YL  YN +  AGW+V    L+   L+  S    + S  + +   QT A LE++H A+GI+
Sbjct: 42  YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIV 101

Query: 71  PSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
           PS V L   Q   R          + +VQ   S+ +  +AW + E+
Sbjct: 102 PSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEI 147

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis.

Pongo abelii (taxid: 9601)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q6Y1H2|HACD2_HUMAN Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 2 OS=Homo sapiens GN=PTPLB PE=1 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%)

Query: 11  YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
           YL  YN +  AGW+V    L+   L+  S    + S  + +   QT A LE++H A+GI+
Sbjct: 41  YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIV 100

Query: 71  PSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
           PS V L   Q   R          + +VQ   S+ +  +AW + E+
Sbjct: 101 PSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEI 146

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9D3B1|HACD2_MOUSE Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 2 OS=Mus musculus GN=Ptplb PE=2 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 50/106 (47%)

Query: 11  YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
           YL  YN +  AGW+V    L+   L+  S    + S    +   QT A LE++H A+GI+
Sbjct: 41  YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIERPLKFFQTGALLEILHCAIGIV 100

Query: 71  PSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
           PS V L   Q   R          + +VQ   S+ +  +AW + E+
Sbjct: 101 PSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEI 146

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q8K2C9|HACD3_MOUSE Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 3 OS=Mus musculus GN=ptplad1 PE=1 SV=2

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 2/110 (1%)

Query: 9   KLYLFGYNSLQAAG--WIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGA 66
           K YLF YN +Q  G  WI     +   +L  +S   TF +  ++++  Q  A +E ++ A
Sbjct: 147 KGYLFMYNLVQLLGFSWIFVNLTVRFFILGKESFYDTFHNVADMMYFCQMLALVETLNAA 206

Query: 67  VGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
           +G+  + V    +Q+ GR     +    + ++Q+   +F  F +W  IE+
Sbjct: 207 IGVTSTPVLPALIQFLGRNFILFLVFGTMEEMQNKAVVFFVFYSWSAIEI 256

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis. Involved in Rac1-signaling pathways leading to the modulation of gene expression.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9P035|HACD3_HUMAN Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 3 OS=Homo sapiens GN=PTPLAD1 PE=1 SV=2

 Score = 50.8 bits (120), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 2/110 (1%)

Query: 9   KLYLFGYNSLQAAG--WIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGA 66
           K YLF YN +Q  G  WI     +   +L  +S   TF +  ++++  Q  A +E ++ A
Sbjct: 147 KGYLFMYNLVQFLGFSWIFVNLTVRFCILGKESFYDTFHTVADMMYFCQMLAVVETINAA 206

Query: 67  VGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
           +G+  S V    +Q  GR     +    + ++Q+   +F  F  W  IE+
Sbjct: 207 IGVTTSPVLPSLIQLLGRNFILFIIFGTMEEMQNKAVVFFVFYLWSAIEI 256

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis. Involved in Rac1-signaling pathways leading to the modulation of gene expression.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q5NVQ2|PTAD1_PONAB Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 3 OS=Pongo abelii GN=PTPLAD1 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 2/110 (1%)

Query: 9   KLYLFGYNSLQAAG--WIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGA 66
           K YLF YN +Q  G  WI     +   +L  +S   TF +  ++++  Q  A +E ++ A
Sbjct: 149 KGYLFMYNLVQFLGFSWIFVNLTVRFCILGKESFYDTFHTVADMMYFCQMLAVVETINAA 208

Query: 67  VGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
           +G+  S V    +Q  GR     +    + ++Q+   +F  F  W  IE+
Sbjct: 209 IGVTTSPVLPSLIQLLGRNFILFIIFGTMEEMQNKAVVFFVFYLWSAIEI 258

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis. Involved in Rac1-signaling pathways leading to the modulation of gene expression.

Pongo abelii (taxid: 9601)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9N1R5|HACD1_SHEEP Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 1 OS=Ovis aries GN=PTPLA PE=2 SV=1

 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 49/102 (48%)

Query: 15  YNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGV 74
           YN    AGW+V    ++   +   +  G + S  + +   QT A LE+VH  +GI+P+ V
Sbjct: 79  YNIAMTAGWLVLAIAMVRFYMEKGTHKGLYKSIQKTLKFFQTFALLEIVHCLIGIVPTSV 138

Query: 75  WLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
            +  +Q   R     +    I  +Q+  S+ +  +AW + E+
Sbjct: 139 LVAGVQVSSRIFMVWLVTHSIKPIQNEESVVLFLVAWTVTEI 180

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis.

Ovis aries (taxid: 9940)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9QY80|HACD1_MOUSE Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 1 OS=Mus musculus GN=Ptpla PE=2 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 49/102 (48%)

Query: 15  YNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGV 74
           YN    AGW+V    ++   +   +  G + S  + +   QT A LEVVH  +GI+P+ V
Sbjct: 72  YNIAMTAGWLVLAIAMVRFYMEKGTHRGLYKSIQKTLKFFQTFALLEVVHCLIGIVPTSV 131

Query: 75  WLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
            +  +Q   R     +    I  +Q+  S+ +  ++W + E+
Sbjct: 132 LVTGVQVSSRIFMVWLITHSIKPIQNEESVVLFLVSWTVTEI 173

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
TAIR|locus:2174319	272	AT5G59770 "AT5G59770" [Arabido	0.507	0.352	0.494	4.9e-21
UNIPROTKB|Q2KIP8	254	PTPLB "Very-long-chain (3R)-3-	0.603	0.448	0.313	2.4e-10
UNIPROTKB|Q6Y1H2	254	PTPLB "Very-long-chain (3R)-3-	0.603	0.448	0.313	3.2e-10
MGI|MGI:1918007	254	Ptplb "protein tyrosine phosph	0.603	0.448	0.313	4.2e-10
ZFIN|ZDB-GENE-040426-1200	404	ptplad1 "protein tyrosine phos	0.571	0.267	0.309	1.2e-09
UNIPROTKB|H3BMZ1	139	PTPLAD1 "Very-long-chain (3R)-	0.571	0.776	0.272	3.3e-08
UNIPROTKB|Q4W1W1	249	PTPLA "Very-long-chain (3R)-3-	0.608	0.461	0.267	9.4e-07
UNIPROTKB|H3BRL8	245	PTPLAD1 "Very-long-chain (3R)-	0.571	0.440	0.272	1.3e-06
MGI|MGI:1914025	232	Ptplad2 "protein tyrosine phos	0.619	0.504	0.298	1.5e-06
MGI|MGI:1889341	362	Ptplad1 "protein tyrosine phos	0.571	0.298	0.263	2.3e-06

TAIR|locus:2174319 AT5G59770 "AT5G59770" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 48/97 (49%), Positives = 67/97 (69%)

Query:    25 VAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGR 84
             +++ ++L++ LS K+I   +ASAG +I + QTAA LEV+HGA+GI+PSG   P MQW GR
Sbjct:    73 ISLLIILNSFLSNKTIISAYASAGFLISLFQTAAILEVLHGAIGIVPSGFLSPLMQWSGR 132

Query:    85 TLFFLVTACEIVQVQDHPSLFITFLAWCLIE-VHYVH 120
             T F L    +I +VQD P L IT +AWC+ E + Y H
Sbjct:   133 THFILAIVGQIKEVQDSPWLSITLVAWCIGEMIRYPH 169

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q2KIP8 PTPLB "Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 2" [Bos taurus (taxid:9913)]

 Score = 148 (57.2 bits), Expect = 2.4e-10, P = 2.4e-10
 Identities = 36/115 (31%), Positives = 55/115 (47%)

Query:    11 YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
             YL  YN +  AGW+V    L+   L+  S    + S  + +   QT A LE++H A+GI+
Sbjct:    41 YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIV 100

Query:    71 PSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV-HYVHSTIS 124
             PS V L  +Q   R          + +VQ   S+ +  +AW + E+  Y   T S
Sbjct:   101 PSSVVLTSIQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFS 155

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

UNIPROTKB|Q6Y1H2 PTPLB "Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 2" [Homo sapiens (taxid:9606)]

 Score = 147 (56.8 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 36/115 (31%), Positives = 54/115 (46%)

Query:    11 YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
             YL  YN +  AGW+V    L+   L+  S    + S  + +   QT A LE++H A+GI+
Sbjct:    41 YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIV 100

Query:    71 PSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV-HYVHSTIS 124
             PS V L   Q   R          + +VQ   S+ +  +AW + E+  Y   T S
Sbjct:   101 PSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFS 155

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1918007 Ptplb "protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b" [Mus musculus (taxid:10090)]

 Score = 146 (56.5 bits), Expect = 4.2e-10, P = 4.2e-10
 Identities = 36/115 (31%), Positives = 53/115 (46%)

Query:    11 YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
             YL  YN +  AGW+V    L+   L+  S    + S    +   QT A LE++H A+GI+
Sbjct:    41 YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIERPLKFFQTGALLEILHCAIGIV 100

Query:    71 PSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV-HYVHSTIS 124
             PS V L   Q   R          + +VQ   S+ +  +AW + E+  Y   T S
Sbjct:   101 PSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFS 155

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

ZFIN|ZDB-GENE-040426-1200 ptplad1 "protein tyrosine phosphatase-like A domain containing 1" [Danio rerio (taxid:7955)]

 Score = 147 (56.8 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 34/110 (30%), Positives = 55/110 (50%)

Query:     9 KLYLFGYNSLQAAG--WIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGA 66
             K +LF YN +Q  G  WI     +   +L   S   TF +  ++++  Q  A +EV++ A
Sbjct:   144 KGFLFMYNLVQFLGYSWIFVNMTVRLFILGQDSFYDTFHTIADVMYFCQMLAIMEVINPA 203

Query:    67 VGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
             VG++ +GV   F+Q  GR     V    +  +Q+ P +F  F  W  IE+
Sbjct:   204 VGLVKTGVMPAFIQVMGRNFILFVIFGSLEDMQNKPVVFFVFYLWSTIEI 253

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

UNIPROTKB|H3BMZ1 PTPLAD1 "Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 3" [Homo sapiens (taxid:9606)]

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 30/110 (27%), Positives = 52/110 (47%)

Query:     9 KLYLFGYNSLQAAG--WIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGA 66
             K YLF YN +Q  G  WI     +   +L  +S   TF +  ++++  Q  A +E ++ A
Sbjct:    30 KGYLFMYNLVQFLGFSWIFVNLTVRFCILGKESFYDTFHTVADMMYFCQMLAVVETINAA 89

Query:    67 VGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
             +G+  S V    +Q  GR     +    + ++Q+   +F  F  W  IE+
Sbjct:    90 IGVTTSPVLPSLIQLLGRNFILFIIFGTMEEMQNKAVVFFVFYLWSAIEI 139

GO:0007249 "I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0007254 "JNK cascade" evidence=IEA

GO:0007266 "Rho protein signal transduction" evidence=IEA

UNIPROTKB|Q4W1W1 PTPLA "Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 1" [Canis lupus familiaris (taxid:9615)]

 Score = 127 (49.8 bits), Expect = 9.4e-07, P = 9.4e-07
 Identities = 31/116 (26%), Positives = 55/116 (47%)

Query:    10 LYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGI 69
             ++L  YN    AGW+V    ++   +   +  G + S  + +   QT A LE+VH  +GI
Sbjct:    35 VWLTFYNIAMTAGWLVLAIAMVRFYMEKGTHKGLYKSIQKTLKFFQTFALLEIVHCLIGI 94

Query:    70 LPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV-HYVHSTIS 124
             +P+ V +  +Q   R     +    I  +Q+  S+ +  +AW + E+  Y   T S
Sbjct:    95 VPTSVIVAGVQVSSRIFMVWLITHSIKPIQNEESVVLFLVAWTVTEITRYSFYTFS 150

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0004864 "protein phosphatase inhibitor activity" evidence=IEA

UNIPROTKB|H3BRL8 PTPLAD1 "Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 3" [Homo sapiens (taxid:9606)]

 Score = 126 (49.4 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 30/110 (27%), Positives = 52/110 (47%)

Query:     9 KLYLFGYNSLQAAG--WIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGA 66
             K YLF YN +Q  G  WI     +   +L  +S   TF +  ++++  Q  A +E ++ A
Sbjct:    30 KGYLFMYNLVQFLGFSWIFVNLTVRFCILGKESFYDTFHTVADMMYFCQMLAVVETINAA 89

Query:    67 VGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
             +G+  S V    +Q  GR     +    + ++Q+   +F  F  W  IE+
Sbjct:    90 IGVTTSPVLPSLIQLLGRNFILFIIFGTMEEMQNKAVVFFVFYLWSAIEI 139

GO:0007249 "I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0007254 "JNK cascade" evidence=IEA

GO:0007266 "Rho protein signal transduction" evidence=IEA

MGI|MGI:1914025 Ptplad2 "protein tyrosine phosphatase-like A domain containing 2" [Mus musculus (taxid:10090)]

 Score = 125 (49.1 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 37/124 (29%), Positives = 67/124 (54%)

Query:    10 LYLFGYNSLQAAG--WIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAV 67
             +YLF Y  +Q  G  WI+A   +        S+A TF + G ++ + Q+ + LE++H  +
Sbjct:    18 VYLFIYYLIQFCGHSWILANMTVRFFSFGKDSMADTFYAIGLVMRVCQSISLLELLHIYI 77

Query:    68 GILPSGVWLPFMQWCGRT--LFFLVTACEIVQVQDHPSLFITFLAWCLIE-VHYVHSTIS 124
             GI  + ++  F+Q   R   LF ++T+ E  +VQ+   + + F+ W L++ V Y +S +S
Sbjct:    78 GIESNQLFPRFLQLTERVIILFGVITSQE--EVQEKCVVCVLFILWNLLDMVRYTYSMLS 135

Query:   125 YRST 128
                T
Sbjct:   136 VIGT 139

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

MGI|MGI:1889341 Ptplad1 "protein tyrosine phosphatase-like A domain containing 1" [Mus musculus (taxid:10090)]

 Score = 127 (49.8 bits), Expect = 2.3e-06, P = 2.3e-06
 Identities = 29/110 (26%), Positives = 54/110 (49%)

Query:     9 KLYLFGYNSLQAAG--WIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGA 66
             K YLF YN +Q  G  WI     +   +L  +S   TF +  ++++  Q  A +E ++ A
Sbjct:   147 KGYLFMYNLVQLLGFSWIFVNLTVRFFILGKESFYDTFHNVADMMYFCQMLALVETLNAA 206

Query:    67 VGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
             +G+  + V    +Q+ GR     +    + ++Q+   +F  F +W  IE+
Sbjct:   207 IGVTSTPVLPALIQFLGRNFILFLVFGTMEEMQNKAVVFFVFYSWSAIEI 256

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0007249 "I-kappaB kinase/NF-kappaB cascade" evidence=IDA

GO:0007254 "JNK cascade" evidence=IDA

GO:0007266 "Rho protein signal transduction" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.2.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_I1406 hypothetical protein (219 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	189
pfam04387	161	pfam04387, PTPLA, Protein tyrosine phosphatase-lik	7e-13
PLN02838	221	PLN02838, PLN02838, 3-hydroxyacyl-CoA dehydratase	2e-05

>gnl|CDD|202993 pfam04387, PTPLA, Protein tyrosine phosphatase-like protein, PTPLA

 Score = 63.0 bits (154), Expect = 7e-13
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 55  QTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLI 114
           QT A LE++H A G++ S V   F+Q   R          + +VQ  P++    +AW + 
Sbjct: 1   QTLAVLEILHAAFGLVRSPVLTTFLQVSSRLFVVWGILYSLPEVQASPAVPSLLIAWSIT 60

Query: 115 EV 116
           E+
Sbjct: 61  EI 62

This family includes the mammalian protein tyrosine phosphatase-like protein, PTPLA. A significant variation of PTPLA from other protein tyrosine phosphatases is the presence of proline instead of catalytic arginine at the active site. It is thought that PTPLA proteins have a role in the development, differentiation, and maintenance of a number of tissue types. Length = 161

>gnl|CDD|166479 PLN02838, PLN02838, 3-hydroxyacyl-CoA dehydratase subunit of elongase

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 1/108 (0%)

Query: 9   KLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVG 68
           +LYL  YN +   GW   +++ ++ L  +   A  +A+    + + QTAA LE++HG VG
Sbjct: 10  RLYLTVYNWVVFIGWAQVLYLAVTTLKESGHEA-VYAAVERPLQLAQTAAVLEILHGLVG 68

Query: 69  ILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
           ++ S V     Q   R            +V+ H  +    ++W + E+
Sbjct: 69  LVRSPVSATLPQIGSRLFLTWGILWSFPEVRSHILVTSLVISWSITEI 116

Length = 221

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	189
PLN02838	221	3-hydroxyacyl-CoA dehydratase subunit of elongase	100.0
KOG3187	223	consensus Protein tyrosine phosphatase-like protei	100.0
COG5198	209	Ptpl Protein tyrosine phosphatase-like protein (co	99.96
PF04387	164	PTPLA: Protein tyrosine phosphatase-like protein,	99.96

>PLN02838 3-hydroxyacyl-CoA dehydratase subunit of elongase

Probab=100.00  E-value=4.7e-43  Score=298.57  Aligned_cols=165  Identities=24%  Similarity=0.349  Sum_probs=149.5

Q ss_pred             CCCCccchhHhHHhHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHHhhhhcccccccccchhhhhc
Q 029733            3 HQRQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWC   82 (189)
Q Consensus         3 ~~~~l~~~YL~lYN~vq~~gWs~IL~~~l~~l~~~g~~~~~y~~v~~~l~~~Qt~AvLEIlHa~lGLVrS~v~tT~~QV~   82 (189)
                      +.++++|.||++||++|++||+++|++++.++..+|+ +++|+++++.++++|++|++||+|+++|+||||+.+|++||+
T Consensus         4 ~~~~l~~~YL~~YN~~~~~gW~~il~~~~~~~~~~~~-~~~~~~v~~~l~~~QtlAilEilHa~~GlVrS~v~~T~~QV~   82 (221)
T PLN02838          4 FGSLLRRLYLTVYNWVVFIGWAQVLYLAVTTLKESGH-EAVYAAVERPLQLAQTAAVLEILHGLVGLVRSPVSATLPQIG   82 (221)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcchHHHHHH
Confidence            3457899999999999999999999999999988773 568999999999999999999999999999999999999999


Q ss_pred             cceeeeeeEeecccccccchhhHHHHHHhhhhhh-hhHHHHHHhhcccCccCCCCchhhhhhhhhhheeeccCCcccccc
Q 029733           83 GRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV-HYVHSTISYRSTWGNVTPKPSISIYEREKYLCKFLCWPPFQLLQC  161 (189)
Q Consensus        83 sRl~Ivw~V~~~~p~~~~~~~v~~ll~AWsitEI-RY~yY~~~ll~~~g~lt~~p~i~~~~r~~~~~~~~~~~~~~~~~~  161 (189)
                      ||++++|+|++..|++++++.++.|++|||++|+ |||||+++++.  |.   .|.++.|+|  |..++.-.|-      
T Consensus        83 sR~~iv~~v~~~~p~~~~~~~~~~l~~aWs~tEvIRY~yY~~~~~~--~~---~p~~L~WLR--Yt~FivLYPl------  149 (221)
T PLN02838         83 SRLFLTWGILWSFPEVRSHILVTSLVISWSITEIIRYSFFGMKEAF--GF---APSWLLWLR--YSTFLLLYPT------  149 (221)
T ss_pred             HHHHHHHHHhhcCcchhcccHHHHHHHHHHHHHHHHHHHHHHHHhc--CC---CcHHHHHHH--Hhccceecch------
Confidence            9999999999999999999999999999999999 99999998652  21   499999999  9999999998      


Q ss_pred             CCCCeeeeeeeehhhhhhhHhhhC
Q 029733          162 CPGCICDVSICLDQTLLTYAQATG  185 (189)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~  185 (189)
                          |..+|.=+-+.-|||+++++
T Consensus       150 ----Gi~~E~~~i~~al~~~~~~~  169 (221)
T PLN02838        150 ----GITSEVGLIYIALPYMKASE  169 (221)
T ss_pred             ----HHHHHHHHHHHhchhhhccc
Confidence                77666666677788888765

>KOG3187 consensus Protein tyrosine phosphatase-like protein PTPLA (contains Pro instead of catalytic Arg) [General function prediction only]

Probab=100.00  E-value=2.6e-36  Score=256.94  Aligned_cols=165  Identities=23%  Similarity=0.322  Sum_probs=147.8

Q ss_pred             CCCCccchhHhHHhHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHHhhhhcccccccccchhhhhc
Q 029733            3 HQRQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWC   82 (189)
Q Consensus         3 ~~~~l~~~YL~lYN~vq~~gWs~IL~~~l~~l~~~g~~~~~y~~v~~~l~~~Qt~AvLEIlHa~lGLVrS~v~tT~~QV~   82 (189)
                      +.+.+++.||++||.+|++||++++..+...+..+|+.+++||++++.++++|++|++|++|+.+|+|||++++|++||.
T Consensus         4 ~l~~~~~~yL~~YNl~~fvgw~~~~l~~~~~~~~~~~~~~~y~si~~~l~~~Qtla~lEi~~~~~g~v~S~~v~t~~Qv~   83 (223)
T KOG3187|consen    4 ELGMLKKSYLFLYNLVSFVGWIVLLLATVVLYLTKGSPAVLYDSIEKVLKFCQTLALLEIINASFGLVKSSPVVTLFQVS   83 (223)
T ss_pred             cccchhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCccccHHHHHHHHHHHHHHHHHHHHHHHhccccCCceeeeeeec
Confidence            45678999999999999999999999999999999988989999999999999999999999999999999999999999


Q ss_pred             cceeeeeeEeecccccccchhhHHHHHHhhhhhh-hhHHHHHHhhcccCccCCCCchhhhhhhhhhheeeccCCcccccc
Q 029733           83 GRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV-HYVHSTISYRSTWGNVTPKPSISIYEREKYLCKFLCWPPFQLLQC  161 (189)
Q Consensus        83 sRl~Ivw~V~~~~p~~~~~~~v~~ll~AWsitEI-RY~yY~~~ll~~~g~lt~~p~i~~~~r~~~~~~~~~~~~~~~~~~  161 (189)
                      ||++++|++++..|+++.++++..++.+|+++|| |||||++++++.      .|+++.|+|  |--+++--|-      
T Consensus        84 sRl~il~~i~~~~~~~~~~~~~~~l~~~ws~tEIiRY~fY~f~~~~~------~p~~l~wlR--Yt~Fi~LYP~------  149 (223)
T KOG3187|consen   84 SRLFILWGIFHMCSIIQASAVVFFLLIAWSLTEIIRYSFYAFNLLGV------LPKLLTWLR--YTLFILLYPI------  149 (223)
T ss_pred             ccceehhhhhhccchhhccchHHHHHHHHHHHHHHHHHHHHHHhccC------CchhhhHhh--hhhheeeecc------
Confidence            9999999999999999999999999999999999 999999999752      799999999  9999999988      


Q ss_pred             CCCCeeeeeeeehhhhhhhHhhhC
Q 029733          162 CPGCICDVSICLDQTLLTYAQATG  185 (189)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~  185 (189)
                          |+.+|-=.=.-.+++++.+|
T Consensus       150 ----Gi~~E~l~i~~al~~~~~~~  169 (223)
T KOG3187|consen  150 ----GITSELLTLYAALPAAGETE  169 (223)
T ss_pred             ----eehhhHHHHHHHHHHhcccc
Confidence                55444322333456665544

>COG5198 Ptpl Protein tyrosine phosphatase-like protein (contains Pro instead of catalytic Arg) [General function prediction only]

Probab=99.96  E-value=3.3e-29  Score=206.97  Aligned_cols=140  Identities=19%  Similarity=0.216  Sum_probs=126.0

Q ss_pred             CccchhHhHHhHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHHhhhhcccccccccchhhhhccce
Q 029733            6 QPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRT   85 (189)
Q Consensus         6 ~l~~~YL~lYN~vq~~gWs~IL~~~l~~l~~~g~~~~~y~~v~~~l~~~Qt~AvLEIlHa~lGLVrS~v~tT~~QV~sRl   85 (189)
                      .++-.||-+||.+++.+|.+++.+....+...++++ +|++......++|++|++|+.|+.+|.|+|+++||.|||.||+
T Consensus         4 ~l~isyl~lYN~~s~f~w~~vlll~~lv~~kt~dpa-~f~et~~va~lvQt~ai~E~~ns~~g~v~S~~LtTv~Qv~SRl   82 (209)
T COG5198           4 ALPISYLRLYNTASCFIWCIVLLLASLVFYKTMDPA-VFHETLRVAGLVQTFAIMEAANSSAGKVNSRYLTTVMQVISRL   82 (209)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHH
Confidence            455689999999999999999998888887788877 6888999999999999999999999999999999999999999


Q ss_pred             eeeeeEeecccccccchhhHHHHHHhhhhhh-hhHHHHHHhhcccCccCCCCchhhhhhhhhhheeeccCC
Q 029733           86 LFFLVTACEIVQVQDHPSLFITFLAWCLIEV-HYVHSTISYRSTWGNVTPKPSISIYEREKYLCKFLCWPP  155 (189)
Q Consensus        86 ~Ivw~V~~~~p~~~~~~~v~~ll~AWsitEI-RY~yY~~~ll~~~g~lt~~p~i~~~~r~~~~~~~~~~~~  155 (189)
                      +++|||+++.-.+-+++.+..+.+|||++|+ ||.||+|++   +|    .|.+++++|  |-.+..-.|-
T Consensus        83 ~ivwgvf~p~~~~i~s~~y~s~~~aWsiteivRYafY~F~l---ng----~p~~l~~lR--YNlFlilyPi  144 (209)
T COG5198          83 FIVWGVFYPYCGIINSWTYPSITTAWSITEIVRYAFYTFRL---NG----IPNTLRVLR--YNLFLILYPI  144 (209)
T ss_pred             HHHHhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHh---cC----Cchhhhhhh--hhhhhhhcch
Confidence            9999999776666569999999999999999 999999999   44    599999999  7776666665

>PF04387 PTPLA: Protein tyrosine phosphatase-like protein, PTPLA; InterPro: IPR007482 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity

Probab=99.96  E-value=2.1e-30  Score=211.75  Aligned_cols=113  Identities=27%  Similarity=0.364  Sum_probs=105.0

Q ss_pred             HHHHHHHHhhhhcccccccccchhhhhccceeeeeeEeecccccccchhhHHHHHHhhhhhh-hhHHHHHHhhcccCccC
Q 029733           55 QTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV-HYVHSTISYRSTWGNVT  133 (189)
Q Consensus        55 Qt~AvLEIlHa~lGLVrS~v~tT~~QV~sRl~Ivw~V~~~~p~~~~~~~v~~ll~AWsitEI-RY~yY~~~ll~~~g~lt  133 (189)
                      |++|++||+|+++|+||||+.+|++||+||++++|++++..|+++.++++.+|++|||++|+ |||||++++++      
T Consensus         1 Q~~a~lEi~h~~~Glv~S~~~~t~~Qv~sR~~vv~~v~~~~p~~~~~~~~~~l~~aWsl~EviRY~yY~~~l~~------   74 (164)
T PF04387_consen    1 QTLAVLEILHAALGLVRSPVLTTFMQVFSRLFVVWGVIYPFPEVQSSPAVPLLLIAWSLTEVIRYPYYALKLLG------   74 (164)
T ss_pred             CchHHHHHHHHHhccccCccHHHHHHHHHHHHeehhhhccccccccccchhhHHHHHHhhhcchhHHHHHHhcC------
Confidence            89999999999999999999999999999999999999999999999999999999999999 99999999953      


Q ss_pred             CCCchhhhhhhhhhheeeccCCccccccCCCCeeeeeeeehhhhhhhHhhhC
Q 029733          134 PKPSISIYEREKYLCKFLCWPPFQLLQCCPGCICDVSICLDQTLLTYAQATG  185 (189)
Q Consensus       134 ~~p~i~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (189)
                      -.|.++.|+|  |..++.--|-          |..+|.-+-+.-+++.++++
T Consensus        75 ~~p~~L~WLR--Ys~FivLYPl----------G~~~E~~~~~~al~~~~~~~  114 (164)
T PF04387_consen   75 IVPYWLTWLR--YSAFIVLYPL----------GILSELLLIYRALPYIKETK  114 (164)
T ss_pred             CCchHHHHHH--HhhHhhccch----------HHHHHHHHHHHhCcccccCC
Confidence            4599999999  9999999999          78888877788888877664

Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This family includes the mammalian protein tyrosine phosphatase-like protein, PTPLA. A significant variation of PTPLA from other protein tyrosine phosphatases is the presence of proline instead of catalytic arginine at the active site. It is thought that PTPLA proteins have a role in the development, differentiation, and maintenance of a number of tissue types [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00