Citrus Sinensis ID: 029746

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MARVFPLLASQIIIFFLFSFSNQSYGYATTLDKNFFRLKEEKLSHFRLYWHDIYSGSNPTAVAVVAAPQKNSSTLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAARDENGLMMVMNFAFMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGLFRFARGYVEARTHKFDATTGDATVEYNIYVLHY
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEEEcccccccEEEEEEcccccccccccEEEEEEcccccccccccEEEEEEEEEEEEEccccccEEEEEEEEEEccccccEEEEEEcEEccccccEEEEEEEcccEEEEEEEEEEEEEEEEccccccEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHcccccccccccHHcccccccccEEEEEEEEEcccccccEEEEEccccccccccccEEEEEcccccccccccccccccccEEEEEccccccEEEEEEEEEEEcccccccEEEEEccccHHHHHccccEEcccccEEEEEEEEEEEEEEEEcccccEEEEEEEEEEEc
Coil and Loop (DISEMBL)
MARVFPLLASQIIIFFLFSfsnqsygyattLDKNFFRLKEEKLSHFRLywhdiysgsnptAVAVVaapqknsstlfgaismiddpltegpelssklVGKAQGFYASAARDENGLMMVMNFAFMegkyngstisvlgrnkvfspmrempviggsgLFRFARGYVEARthkfdattgdatvEYNIYVLHY
Flexible Loop (DISEMBL)
MARVFPLLASQIIIFFLFSFSNQSYGYATTLDKNFFRLKEEKLSHFRLYWHDIYSGSNPTAVAVVAAPQKNSSTLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAARDENGLMMVMNFAFMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGLFRFARGYVEARthkfdattgdatveYNIYVLHY
Low Complexity Region (SEG)
MARVFPllasqiiifflfsfsNQSYGYATTLDKNFFRLKEEKLSHFRLYWHDIYSGSNPTAVAVVAAPQKNSSTLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAARDENGLMMVMNFAFMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGLFRFARGYVEARTHKFDATTGDATVEYNIYVLHY
Disordered region (IsUnstruct)
***VFPLLASQIIIFFLFSFSNQSYGYATTLDKNFFRLKEEKLSHFRLYWHDIYSGSNPTAVAVVAAPQKNSSTLFGAISMID************LVGKAQGFYASAARDENGLMMVMNFAFMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGLFRFARGYVEARTHKFDATTGDATVEYNIYVLH*
Disordered Region (DISOPRED)
*ARVFPLLASQIIIFFLFSFSNQSYG*****************SHFRLYWHDIYSGSNPTAVAVVAAPQKNSSTLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAARDENGLMMVMNFAFMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGLFRFARGYVEARTHKFDATTGDATVEYNIYVLHY
Disordered Region (DISEMBL)
MARVFPLLASQIIIFFLFSFSNQSYGYATTLDKNFFRLKEEKLSHFRLYWHDIYSGSNPTAVAVVAAPQKNSSTLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAARDENGLMMVMNFAFMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGLFRFARGYVEARTHKFDATTGDATVEYNIYVLHY
Disordered Region (DISPRO)
*ARVFPLLASQIIIFFLFSFSNQSYGYATTLDKNFFRLKEEKLSHFRLYWHDIYSGSNPTAVAVVAAPQKNSSTLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAARDENGLMMVMNFAFMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGLFRFARGYVEARTHKFDATTGDATVEYNIYVLHY
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MARVFPLLASQIIIFFLFSFSNQSYGYATTLDKNFFRLKEEKLSHFRLYWHDIYSGSNPTAVAVVAAPQKNSSTLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAARDENGLMMVMNFAFMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGLFRFARGYVEARTHKFDATTGDATVEYNIYVLHY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	188	2.2.26 [Sep-21-2011]
P13240	184	Disease resistance respon	N/A	no	0.712	0.728	0.346	7e-12

>sp|P13240|DR206_PEA Disease resistance response protein 206 OS=Pisum sativum GN=PI206 PE=2 SV=2

 Score = 70.1 bits (170), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 72/147 (48%), Gaps = 13/147 (8%)

Query: 48  LYWHDI-YSGSNPT--AVAVVAAPQKNSSTL------FGAISMIDDPLTEGPELSSKLVG 98
            Y+HDI Y+G N      A+VAAP+  S T       FG I + DDP+T    LSSK VG
Sbjct: 36  FYFHDILYNGKNAANATSAIVAAPEGVSLTKLAPQSHFGNIIVFDDPITLSHSLSSKQVG 95

Query: 99  KAQGFYASAARDENGLMMVMNFAFMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGLFRF 158
           +AQGFY    ++     +   F      + G TI+  G + + +  R++ V GG+G F  
Sbjct: 96  RAQGFYIYDTKNTYTSWLSFTFVLNSTHHQG-TITFAGADPIVAKTRDISVTGGTGDFFM 154

Query: 159 ARGYVEARTHKFDATTGDATVEYNIYV 185
            RG     T   DA  G+A     +Y+
Sbjct: 155 HRGIATITT---DAFEGEAYFRLGVYI 178

Pisum sativum (taxid: 3888)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
224148724	195	predicted protein [Populus trichocarpa]	1.0	0.964	0.605	2e-68
224077362	193	predicted protein [Populus trichocarpa]	0.994	0.968	0.634	6e-68
224073184	193	predicted protein [Populus trichocarpa]	0.994	0.968	0.634	2e-67
256010124	190	dirigent-like protein 1 [Gossypium hirsu	0.957	0.947	0.655	6e-64
224052982	195	predicted protein [Populus trichocarpa]	1.0	0.964	0.625	3e-63
359806765	194	uncharacterized protein LOC100775617 pre	0.877	0.850	0.674	7e-61
256010126	197	dirigent-like protein 2 [Gossypium hirsu	0.994	0.949	0.601	1e-59
225435672	193	PREDICTED: disease resistance response p	0.925	0.901	0.629	1e-59
118483793	194	unknown [Populus trichocarpa]	1.0	0.969	0.597	4e-59
356521072	189	PREDICTED: uncharacterized protein LOC10	0.952	0.947	0.593	4e-59

>gi|224148724|ref|XP_002336701.1| predicted protein [Populus trichocarpa] gi|222836553|gb|EEE74960.1| predicted protein [Populus trichocarpa]

 Score =  263 bits (672), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 118/195 (60%), Positives = 152/195 (77%), Gaps = 7/195 (3%)

Query: 1   MARVFPLLASQIIIF-------FLFSFSNQSYGYATTLDKNFFRLKEEKLSHFRLYWHDI 53
           MAR+ P++ S++II         +   S ++ G+  +LD+  +  K+EKL+HFR+YWHDI
Sbjct: 1   MARIVPIIVSKLIILSTILSPLAIIHASKENQGFVRSLDRKLYGFKKEKLTHFRVYWHDI 60

Query: 54  YSGSNPTAVAVVAAPQKNSSTLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAARDENG 113
           YS  NPTA+ +V +P   S+TLFG++SMIDDPLTE PELSSKL+G+AQGFY SA ++E  
Sbjct: 61  YSAPNPTAIPIVTSPSNTSATLFGSLSMIDDPLTEKPELSSKLIGRAQGFYGSAGQEETA 120

Query: 114 LMMVMNFAFMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGLFRFARGYVEARTHKFDAT 173
           L+M MNF F++GKYNGSTIS+LGRN VFS +REMPVIGGSGLFRFARGY +A T+ F+A 
Sbjct: 121 LLMAMNFVFLQGKYNGSTISILGRNHVFSKVREMPVIGGSGLFRFARGYAQANTYSFNAK 180

Query: 174 TGDATVEYNIYVLHY 188
           TGDA VEYN+YVLHY
Sbjct: 181 TGDAVVEYNVYVLHY 195

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077362|ref|XP_002335799.1| predicted protein [Populus trichocarpa] gi|222834872|gb|EEE73321.1| predicted protein [Populus trichocarpa]

 Score =  262 bits (669), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 120/189 (63%), Positives = 148/189 (78%), Gaps = 2/189 (1%)

Query: 2   ARVFPLLASQIIIFFLFS--FSNQSYGYATTLDKNFFRLKEEKLSHFRLYWHDIYSGSNP 59
           ARVF  + S  I+  L S   + ++  +  +LD+  + LK+EKL+HFR+YWHDIYS  NP
Sbjct: 5   ARVFSAIVSHTILLTLLSSFVTGENQDFVRSLDRKLYGLKKEKLTHFRVYWHDIYSAPNP 64

Query: 60  TAVAVVAAPQKNSSTLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAARDENGLMMVMN 119
           TA+ +V AP   S+TLFG+ISMIDDPLTE PELSSKL+G+AQGFY SA ++E  L+M MN
Sbjct: 65  TAMPIVRAPSNTSATLFGSISMIDDPLTEKPELSSKLIGRAQGFYGSAGQEETALLMAMN 124

Query: 120 FAFMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGLFRFARGYVEARTHKFDATTGDATV 179
           F F++GKYNGSTIS+LGRN VFS +REMPVIGGSGLFRFARGY +A TH FD  +GDA V
Sbjct: 125 FVFLQGKYNGSTISILGRNHVFSKVREMPVIGGSGLFRFARGYAQASTHSFDLKSGDAVV 184

Query: 180 EYNIYVLHY 188
           EYN+YVLHY
Sbjct: 185 EYNVYVLHY 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073184|ref|XP_002304013.1| predicted protein [Populus trichocarpa] gi|222841445|gb|EEE78992.1| predicted protein [Populus trichocarpa]

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 120/189 (63%), Positives = 149/189 (78%), Gaps = 2/189 (1%)

Query: 2   ARVFPLLASQIIIFFLFS--FSNQSYGYATTLDKNFFRLKEEKLSHFRLYWHDIYSGSNP 59
           ARVF  + S  I+  L S   + ++  +  +LD+  + LK+EKL+HFR+YWHDIYS  NP
Sbjct: 5   ARVFSAIVSHTILLTLLSSFVTGENQDFVRSLDRKLYGLKKEKLTHFRVYWHDIYSAPNP 64

Query: 60  TAVAVVAAPQKNSSTLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAARDENGLMMVMN 119
           TA+ +V AP   S+TLFG+ISMIDDPLTE PELSSKL+G+AQGFY SA ++E  L+M MN
Sbjct: 65  TAMPIVRAPSNTSATLFGSISMIDDPLTEKPELSSKLIGRAQGFYGSAGQEEAALLMAMN 124

Query: 120 FAFMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGLFRFARGYVEARTHKFDATTGDATV 179
           F F++GKYNGSTIS+LGRN VFS +REMPVIGGSGLFRFARGY +A T+ F+A TGDA V
Sbjct: 125 FVFLQGKYNGSTISILGRNHVFSKVREMPVIGGSGLFRFARGYAQANTYSFNAKTGDAVV 184

Query: 180 EYNIYVLHY 188
           EYN+YVLHY
Sbjct: 185 EYNVYVLHY 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|256010124|gb|ACU55135.1| dirigent-like protein 1 [Gossypium hirsutum]

 Score =  248 bits (634), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 120/183 (65%), Positives = 143/183 (78%), Gaps = 3/183 (1%)

Query: 8   LASQII--IFFLFSFSNQSYGYATTLDKNFFRLKEEKLSHFRLYWHDIYSGSNPTAVAVV 65
           LA+  I  IF + + +     +A T+DK    +K+EKLSHFRLYWHDI  G N TAV VV
Sbjct: 9   LAAHFIFTIFIVSALAENGSSFARTMDKKVLGMKKEKLSHFRLYWHDIVGGKNATAVPVV 68

Query: 66  AAPQKNSSTLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAARDENGLMMVMNFAFMEG 125
             P +NS+T FG IS+IDDPLT  PELSSK+VG+AQGFY++A++ E GL+M MNFAFMEG
Sbjct: 69  F-PSRNSTTAFGMISVIDDPLTMRPELSSKMVGRAQGFYSAASQQEVGLLMAMNFAFMEG 127

Query: 126 KYNGSTISVLGRNKVFSPMREMPVIGGSGLFRFARGYVEARTHKFDATTGDATVEYNIYV 185
           KYNGSTI++LGRN VFS  REMPVIGGSGLFRFARGYVEARTH FD  TGDA V+Y+ YV
Sbjct: 128 KYNGSTITILGRNTVFSKAREMPVIGGSGLFRFARGYVEARTHLFDPATGDAVVQYDCYV 187

Query: 186 LHY 188
           +HY
Sbjct: 188 MHY 190

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224052982|ref|XP_002297648.1| predicted protein [Populus trichocarpa] gi|118484908|gb|ABK94320.1| unknown [Populus trichocarpa] gi|222844906|gb|EEE82453.1| predicted protein [Populus trichocarpa]

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 122/195 (62%), Positives = 147/195 (75%), Gaps = 7/195 (3%)

Query: 1   MARVFPLLASQIIIFFLFS-------FSNQSYGYATTLDKNFFRLKEEKLSHFRLYWHDI 53
           MAR  P+LAS+ I   L S         +Q + +  +LD+    LK+EKLSHF+LYWHDI
Sbjct: 1   MARSVPILASKFITLLLLSSFATILVTGDQDHEFVRSLDRKLLGLKKEKLSHFKLYWHDI 60

Query: 54  YSGSNPTAVAVVAAPQKNSSTLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAARDENG 113
            +G NP+AV VV  P   S T FG + MID+PLT GPE+SSKLVG+AQG YA A++ + G
Sbjct: 61  LTGQNPSAVQVVPPPSNTSRTAFGLVRMIDNPLTLGPEMSSKLVGRAQGLYAQASQQDIG 120

Query: 114 LMMVMNFAFMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGLFRFARGYVEARTHKFDAT 173
           L+M MNFAF+EGKYNGSTI+VLG+N VFS +REMPVIGGSGLFRFARGYV+ARTHK D  
Sbjct: 121 LLMAMNFAFIEGKYNGSTITVLGKNAVFSTVREMPVIGGSGLFRFARGYVQARTHKLDMA 180

Query: 174 TGDATVEYNIYVLHY 188
           TGDATVEYN+YV HY
Sbjct: 181 TGDATVEYNVYVFHY 195

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806765|ref|NP_001241301.1| uncharacterized protein LOC100775617 precursor [Glycine max] gi|255636993|gb|ACU18829.1| unknown [Glycine max]

 Score =  238 bits (608), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 114/169 (67%), Positives = 139/169 (82%), Gaps = 4/169 (2%)

Query: 22  NQSYGYATTLDKNFFRLK-EEKLSHFRLYWHDIYSGSNPTAVAVVAAPQK-NSSTLFGAI 79
           + S+G+A  +D+    LK +EKLSHF+ YWHDI SG NP++VAVV  P + N++T FG +
Sbjct: 28  DTSFGHA--IDRKLLGLKRKEKLSHFKFYWHDIVSGRNPSSVAVVMPPTRMNTTTAFGLV 85

Query: 80  SMIDDPLTEGPELSSKLVGKAQGFYASAARDENGLMMVMNFAFMEGKYNGSTISVLGRNK 139
           +MID+PLT GPELSSKLVGK+QGFYASA++ E GL+M MNFAF+EGKYNGSTI++LGRN 
Sbjct: 86  NMIDNPLTLGPELSSKLVGKSQGFYASASQSEIGLLMAMNFAFIEGKYNGSTITILGRNC 145

Query: 140 VFSPMREMPVIGGSGLFRFARGYVEARTHKFDATTGDATVEYNIYVLHY 188
           VF  +REMPVIGGSGLFRFARGY EARTH FD   GDA VEYN+YV+HY
Sbjct: 146 VFHKVREMPVIGGSGLFRFARGYAEARTHWFDLKAGDAIVEYNVYVMHY 194

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|256010126|gb|ACU55136.1| dirigent-like protein 2 [Gossypium hirsutum]

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 119/198 (60%), Positives = 145/198 (73%), Gaps = 11/198 (5%)

Query: 1   MARVFPLLASQIIIFFLFSFS----------NQSYGYATTLDKNFFRLKEEKLSHFRLYW 50
           MAR+  LLAS+ I   + S S          N  +G+  +LD+    LK+EKLSHFR+YW
Sbjct: 1   MARIPLLLASKFIFLSILSSSGVIRCTRGENNDDHGFIQSLDRESMGLKKEKLSHFRIYW 60

Query: 51  HDIYSGSNPTAVAVVAAPQKNSSTLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAARD 110
           HDI SG N T++ VV  P   S T FG I+MID+PLT GP LSSKLVG+AQGFYA ++++
Sbjct: 61  HDIVSGRNATSIRVVR-PSNASVTGFGIINMIDNPLTLGPNLSSKLVGRAQGFYALSSQE 119

Query: 111 ENGLMMVMNFAFMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGLFRFARGYVEARTHKF 170
           E GL+M MNFAF EGKYNGSTI+VLGRN VF+ +REM VIGGSGLFRFARGYV+ART+  
Sbjct: 120 EVGLLMSMNFAFTEGKYNGSTITVLGRNPVFNKVREMRVIGGSGLFRFARGYVQARTNTL 179

Query: 171 DATTGDATVEYNIYVLHY 188
           + TTGDA VEY  YV+HY
Sbjct: 180 NLTTGDAIVEYTCYVMHY 197

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435672|ref|XP_002285684.1| PREDICTED: disease resistance response protein 206 [Vitis vinifera]

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 114/181 (62%), Positives = 145/181 (80%), Gaps = 7/181 (3%)

Query: 13  IIFFLFSFSN-----QSYGYATTLDKNFFRLKEEKLSHFRLYWHDIYSGSNPTAVAVVAA 67
           +IF +FS++      + Y Y   ++    ++ +EKLSHFRLYWHDI SGSNPT++ VV  
Sbjct: 15  LIFLIFSYATIPTFGEEYSYVKRVNPKKMKILKEKLSHFRLYWHDIVSGSNPTSIQVVK- 73

Query: 68  PQKNSSTLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAARDENGLMMVMNFAFMEGKY 127
           P  NSST FG+I+MID+PLT GP+LSSKLVGKAQGFY+SA ++E GL+MVMNF F++GKY
Sbjct: 74  PVNNSSTFFGSINMIDNPLTIGPKLSSKLVGKAQGFYSSAGQEEFGLLMVMNFVFIDGKY 133

Query: 128 NGSTISVLGRNKVFSPMREMPVIGGSGLFRFARGYVEARTHKFDATTGDATVEYNIYVLH 187
           NGST +VLGRNKV S +REM VIGGSG+FRFA+GYV+A+T+ F+ +TGDATVEYN YV H
Sbjct: 134 NGSTFTVLGRNKVLSKVREMEVIGGSGIFRFAKGYVQAKTYMFN-STGDATVEYNAYVKH 192

Query: 188 Y 188
           Y
Sbjct: 193 Y 193

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483793|gb|ABK93789.1| unknown [Populus trichocarpa]

 Score =  233 bits (593), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 116/194 (59%), Positives = 142/194 (73%), Gaps = 6/194 (3%)

Query: 1   MARVFPLLASQ-----IIIFFLFSFSNQSYGYATTLDKNFFRLKEEKLSHFRLYWHDIYS 55
           MA++   LAS      I++ +L   + +S  +   L      LK+EKLSH   Y+HDI S
Sbjct: 1   MAKILQNLASSFLVLSIVLSYLIIANAKSQRFTKYLSPATLGLKKEKLSHLHFYFHDIVS 60

Query: 56  GSNPTAVAVVAAPQKN-SSTLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAARDENGL 114
           G NPTAV +  A   N SST FG ++MIDDPLT  PELSSKLVG+AQGFYASA++++ GL
Sbjct: 61  GKNPTAVRIARADMTNTSSTGFGMVAMIDDPLTMTPELSSKLVGRAQGFYASASQNDVGL 120

Query: 115 MMVMNFAFMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGLFRFARGYVEARTHKFDATT 174
           +M MNF FMEGK+NGST+SVLGRN VFS +REMP++GGSGLFRFARGY +A TH FD TT
Sbjct: 121 LMTMNFVFMEGKFNGSTLSVLGRNSVFSTVREMPIVGGSGLFRFARGYAQASTHMFDRTT 180

Query: 175 GDATVEYNIYVLHY 188
           GDA VEYN+YV HY
Sbjct: 181 GDAVVEYNVYVFHY 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521072|ref|XP_003529182.1| PREDICTED: uncharacterized protein LOC100796078 [Glycine max]

 Score =  232 bits (592), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 111/187 (59%), Positives = 141/187 (75%), Gaps = 8/187 (4%)

Query: 10  SQIIIF------FLFSFSNQSYGYATTLDKNFFRL--KEEKLSHFRLYWHDIYSGSNPTA 61
           +Q +IF      F+F+ ++ ++ +  TLD+    L  K+EKLSHFR YWHD+ SG NP++
Sbjct: 3   TQFLIFSLFFTPFIFTAAHDTHDFVRTLDRKMLGLDEKQEKLSHFRFYWHDVVSGRNPSS 62

Query: 62  VAVVAAPQKNSSTLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAARDENGLMMVMNFA 121
           + VV  P KNS+T FG+++MI++PLT  P+L+SKLVGKAQGFYAS ++ E  L+M MNFA
Sbjct: 63  IEVVPPPLKNSTTSFGSVNMIENPLTLEPQLNSKLVGKAQGFYASTSQSEITLLMAMNFA 122

Query: 122 FMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGLFRFARGYVEARTHKFDATTGDATVEY 181
             EGKYNGSTI++LGRN V+   REMPVIGGSGLFRFARGY + RTH F  TT DA VEY
Sbjct: 123 ITEGKYNGSTITILGRNSVYDKEREMPVIGGSGLFRFARGYAQLRTHWFSPTTKDAIVEY 182

Query: 182 NIYVLHY 188
           NIYVLHY
Sbjct: 183 NIYVLHY 189

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
TAIR|locus:2196282	185	AT1G58170 "AT1G58170" [Arabido	0.845	0.859	0.618	4.4e-52
TAIR|locus:2091521	186	AT3G13650 "AT3G13650" [Arabido	0.851	0.860	0.611	5.2e-49
TAIR|locus:2035661	187	AT1G55210 "AT1G55210" [Arabido	0.851	0.855	0.601	2.3e-48
TAIR|locus:2154359	191	AT5G49040 "AT5G49040" [Arabido	0.861	0.848	0.573	1.4e-46
TAIR|locus:2009769	189	AT1G65870 "AT1G65870" [Arabido	0.877	0.873	0.493	5.9e-41
TAIR|locus:2162361	185	AT5G42500 "AT5G42500" [Arabido	0.856	0.870	0.506	2.3e-39
TAIR|locus:2047002	187	AT2G21100 "AT2G21100" [Arabido	0.803	0.807	0.509	6.1e-39
TAIR|locus:2091551	173	AT3G13662 "AT3G13662" [Arabido	0.718	0.780	0.591	6.1e-39
TAIR|locus:2017689	193	AT1G22900 "AT1G22900" [Arabido	0.856	0.834	0.506	3.4e-38
TAIR|locus:2091536	125	AT3G13660 "AT3G13660" [Arabido	0.627	0.944	0.669	4.3e-38

TAIR|locus:2196282 AT1G58170 "AT1G58170" [Arabidopsis thaliana (taxid:3702)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 99/160 (61%), Positives = 130/160 (81%)

Query:    30 TLDKNFFRLKEEKLSHFRLYWHDIYSGSNPTAVAVVAAPQK-NSSTLFGAISMIDDPLTE 88
             TL+ NF   K+EKL+HFR+YWHDI +G + ++V+++  P+K   +T FG + MID+PLT 
Sbjct:    26 TLESNFLHHKKEKLTHFRVYWHDIVTGQDSSSVSIMNPPKKYTGATGFGLMRMIDNPLTL 85

Query:    89 GPELSSKLVGKAQGFYASAARDENGLMMVMNFAFMEGKYNGSTISVLGRNKVFSPMREMP 148
              P+LSSK+VG+AQGFYA  +++E GL+M MNFA ++GKYNGSTI+VLGRN VF  +REMP
Sbjct:    86 TPKLSSKMVGRAQGFYAGTSKEEIGLLMAMNFAILDGKYNGSTITVLGRNSVFDKVREMP 145

Query:   149 VIGGSGLFRFARGYVEARTHKFDATTGDATVEYNIYVLHY 188
             VIGGSGLFRFARGYV+A TH+F+  TG+A VEYN Y+LHY
Sbjct:   146 VIGGSGLFRFARGYVQASTHEFNLKTGNAIVEYNCYLLHY 185

GO:0003674 "molecular_function" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0009807 "lignan biosynthetic process" evidence=ISS

TAIR|locus:2091521 AT3G13650 "AT3G13650" [Arabidopsis thaliana (taxid:3702)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 99/162 (61%), Positives = 127/162 (78%)

Query:    27 YATTLDKNFFRLKEEKLSHFRLYWHDIYSGSNPTAVAVVAAPQKNSSTLFGAISMIDDPL 86
             +A T+DK  F L++EKL+HFR+YWHDI SGSNP++V V+  P  NSS  FG++++ID+ L
Sbjct:    27 FAKTIDKKHFGLRKEKLTHFRVYWHDILSGSNPSSV-VINPPISNSS-FFGSVTVIDNRL 84

Query:    87 TEGPELSSKLVGKAQGFYASAARDENGLMMVMNFAFMEGKYNGSTISVLGRNKVFSPMRE 146
             T    ++S LVG+AQG YA+  + +   +MVMNFAF  GKYNGS+I++LGRN V + +RE
Sbjct:    85 TTEVAVNSTLVGQAQGIYAATGQRDASALMVMNFAFKTGKYNGSSIAILGRNAVLTKVRE 144

Query:   147 MPVIGGSGLFRFARGYVEARTHKFDATTGDATVEYNIYVLHY 188
             MPVIGGSGLFRFARGYVEART  FD  +GDATVEY+ YVLHY
Sbjct:   145 MPVIGGSGLFRFARGYVEARTMWFDQKSGDATVEYSCYVLHY 186

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0009807 "lignan biosynthetic process" evidence=ISS

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

TAIR|locus:2035661 AT1G55210 "AT1G55210" [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 98/163 (60%), Positives = 124/163 (76%)

Query:    27 YATTLDKNFFRL-KEEKLSHFRLYWHDIYSGSNPTAVAVVAAPQKNSSTLFGAISMIDDP 85
             +A T+D+    L K+EKL+HF++YWHDI SG NPT++ ++  P  NSS  FGAISMID+ 
Sbjct:    27 FARTMDRKLLGLHKKEKLTHFKVYWHDILSGPNPTSI-MIQPPVTNSS-YFGAISMIDNA 84

Query:    86 LTEGPELSSKLVGKAQGFYASAARDENGLMMVMNFAFMEGKYNGSTISVLGRNKVFSPMR 145
             LT    ++S ++G+AQGFYA AA+ E G +M MNFAF  GKYNGSTI++LGRN   S +R
Sbjct:    85 LTAKVPMNSTVLGQAQGFYAGAAQKELGFLMAMNFAFKTGKYNGSTITILGRNTALSEVR 144

Query:   146 EMPVIGGSGLFRFARGYVEARTHKFDATTGDATVEYNIYVLHY 188
             EMP++GGSGLFRFARGYVEART   +   GDATVEY+ YVLHY
Sbjct:   145 EMPIVGGSGLFRFARGYVEARTKWINLKNGDATVEYSCYVLHY 187

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0009807 "lignan biosynthetic process" evidence=ISS

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2154359 AT5G49040 "AT5G49040" [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 94/164 (57%), Positives = 123/164 (75%)

Query:    27 YATTLDKNFFRL-KEEKLSHFRLYWHDIYSGSNPTAVAVVAAPQK-NSSTLFGAISMIDD 84
             +A T+++    L K+EKL+H R+YWHDI +G NP+++ +     K +SS+ FG+I+MID+
Sbjct:    28 FARTINRKHLGLGKKEKLTHLRVYWHDIVTGRNPSSIRIQGPVAKYSSSSYFGSITMIDN 87

Query:    85 PLTEGPELSSKLVGKAQGFYASAARDENGLMMVMNFAFMEGKYNGSTISVLGRNKVFSPM 144
              LT    ++S +VG+AQG Y  AA+ E GL+M MN AF  GKYNGSTI++LGRN V S +
Sbjct:    88 ALTLDVPINSTVVGQAQGMYVGAAQKEIGLLMAMNLAFKTGKYNGSTITILGRNTVMSKV 147

Query:   145 REMPVIGGSGLFRFARGYVEARTHKFDATTGDATVEYNIYVLHY 188
             REMPV+GGSG+FRFARGYVEART  FD  TGDATVE N Y+LHY
Sbjct:   148 REMPVVGGSGMFRFARGYVEARTKLFDMKTGDATVESNCYILHY 191

GO:0003674 "molecular_function" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0009807 "lignan biosynthetic process" evidence=ISS

TAIR|locus:2009769 AT1G65870 "AT1G65870" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 82/166 (49%), Positives = 117/166 (70%)

Query:    23 QSYGYATTLDKNFFRLKEEKLSHFRLYWHDIYSGSNPTAVAVVAAPQKNSS-TLFGAISM 81
             +S  ++TT+   +   K +KL+H   Y+HDI SG  PT+V V   P  NSS T FG +++
Sbjct:    24 ESKSFSTTVKAPYPGHKPDKLTHLHFYFHDIVSGDKPTSVQVANGPTTNSSATGFGLVAV 83

Query:    82 IDDPLTEGPELSSKLVGKAQGFYASAARDENGLMMVMNFAFMEGKYNGSTISVLGRNKVF 141
             +DD LT GPE++S+ VG+AQG YASA +++ GL+M  N  F +GK++ ST+++ GRN V 
Sbjct:    84 VDDKLTVGPEITSEEVGRAQGMYASADQNKLGLLMAFNLVFTKGKFSDSTVAMYGRNPVL 143

Query:   142 SPMREMPVIGGSGLFRFARGYVEARTHKFDATTGDATVEYNIYVLH 187
             S +REMP+IGG+G FRF RGY  A+T  F+ T+GDA VEYN+Y+ H
Sbjct:   144 SKVREMPIIGGTGAFRFGRGYALAKTLVFNITSGDAVVEYNVYIWH 189

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0009807 "lignan biosynthetic process" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

TAIR|locus:2162361 AT5G42500 "AT5G42500" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 84/166 (50%), Positives = 111/166 (66%)

Query:    23 QSYGYATTLDKNFFRLKEEKLSHFRLYWHDIYSGSNPTAVAVVAAPQKNSSTL-FGAISM 81
             +S  Y+TT  K     K +K +H   Y+HD+ SG  PTAV V  A + NSS + FG I +
Sbjct:    24 ESEAYSTT--KPCQGYKPDKFTHLHFYFHDVISGDKPTAVKVAEARRTNSSNVNFGVIMI 81

Query:    82 IDDPLTEGPELSSKLVGKAQGFYASAARDENGLMMVMNFAFMEGKYNGSTISVLGRNKVF 141
              DDPLTEGP+ SSK VG+AQG YA  A       MV N AF  G++NGST+++ GRN++F
Sbjct:    82 ADDPLTEGPDPSSKEVGRAQGMYALTAMKNISFTMVFNLAFTAGEFNGSTVAMYGRNEIF 141

Query:   142 SPMREMPVIGGSGLFRFARGYVEARTHKFDATTGDATVEYNIYVLH 187
             S +REMP+IGG+G FRFARGY +A+T+K      DA VEYN+++ H
Sbjct:   142 SKVREMPIIGGTGAFRFARGYAQAKTYKVVGL--DAVVEYNVFIWH 185

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

TAIR|locus:2047002 AT2G21100 "AT2G21100" [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 79/155 (50%), Positives = 110/155 (70%)

Query:    37 RLKE---EKLSHFRLYWHDIYSGSNPTAVAVVAAPQ-KNSSTLFGAISMIDDPLTEGPEL 92
             RL+E   +K+++ + Y+HD  SG NPTAV V      + S TLFGA+ M+DD LTE  + 
Sbjct:    33 RLEETGKDKVTNLQFYFHDTLSGKNPTAVKVAQGTDTEKSPTLFGAVFMVDDALTETADP 92

Query:    93 SSKLVGKAQGFYASAARDENGLMMVMNFAFMEGKYNGSTISVLGRNKVFSPMREMPVIGG 152
              SKLVG+AQG Y S+ ++E GL+M M+F F +G Y  STIS++G+N   +P+REMP++GG
Sbjct:    93 KSKLVGRAQGLYGSSCKEEVGLIMAMSFCFEDGPYKDSTISMIGKNSAMNPIREMPIVGG 152

Query:   153 SGLFRFARGYVEARTHKFDATTGDATVEYNIYVLH 187
             +G+FR ARGY  ART+ FD  TGDA V YN+ ++H
Sbjct:   153 TGMFRMARGYAIARTNWFDPKTGDAIVGYNVTIMH 187

GO:0003674 "molecular_function" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0009807 "lignan biosynthetic process" evidence=ISS

TAIR|locus:2091551 AT3G13662 "AT3G13662" [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 81/137 (59%), Positives = 105/137 (76%)

Query:    39 KEEKLSHFRLYWHDIYSGSNPTAVAVVAAPQKNSSTLFGAISMIDDPLTEGPELSSKLVG 98
             K+EKL+H R+YWH+  +G NP++V ++  P  NSS L G+I+M+DDPLT     ++ +VG
Sbjct:    38 KKEKLTHLRVYWHNSVNGRNPSSV-MIQQPVLNSS-LSGSITMMDDPLTFDVPRNATVVG 95

Query:    99 KAQGFYASAARDENGLMMVMNFAFMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGLFRF 158
             +AQG Y +AA+ E G +MVMNFAF  GKYNGSTI++LGRN V S +REMPV+GGSG+FRF
Sbjct:    96 QAQGMYVAAAQGEIGFLMVMNFAFTTGKYNGSTITILGRNVVMSKVREMPVVGGSGIFRF 155

Query:   159 ARGYVEARTHKFDATTG 175
             ARGYVEART  FD   G
Sbjct:   156 ARGYVEARTKSFDLKAG 172

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0009807 "lignan biosynthetic process" evidence=ISS

TAIR|locus:2017689 AT1G22900 "AT1G22900" [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 84/166 (50%), Positives = 108/166 (65%)

Query:    23 QSYGYATTLDKNFFRLKEEKLSHFRLYWHDIYSGSNPTAVAVVAAPQKNSS-TLFGAISM 81
             QS  Y+ T    F   K +KL+H   Y+HDI SG  PT + V  AP  NSS T+FGA+ +
Sbjct:    32 QSKPYSKTTP--FQGNKPDKLTHLHFYFHDIISGDKPTTIRVAEAPGTNSSATVFGAVLI 89

Query:    82 IDDPLTEGPELSSKLVGKAQGFYASAARDENGLMMVMNFAFMEGKYNGSTISVLGRNKVF 141
             +D P+TEGPELSSK VG+AQG YAS      G  MV NF F EG++NGST ++ GRN + 
Sbjct:    90 VDAPVTEGPELSSKEVGRAQGLYASTDMKTFGFTMVFNFVFTEGEFNGSTAALYGRNPIL 149

Query:   142 SPMREMPVIGGSGLFRFARGYVEARTHKFDATTGDATVEYNIYVLH 187
                RE+P+IGG+G FRFARGY   +T+K      DA VEYN+++ H
Sbjct:   150 LEERELPIIGGTGDFRFARGYALPKTYK--VVNIDAVVEYNVFIWH 193

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

TAIR|locus:2091536 AT3G13660 "AT3G13660" [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 79/118 (66%), Positives = 94/118 (79%)

Query:    71 NSSTLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAARDENGLMMVMNFAFMEGKYNGS 130
             NSST FG+I+M D+ LT    ++S +VG++QGFYA AA+ E G +M MNFAF  GKYNGS
Sbjct:     8 NSSTSFGSITMTDNALTSDVPVNSTVVGQSQGFYAGAAQRELGFLMAMNFAFKTGKYNGS 67

Query:   131 TISVLGRNKVFSPMREMPVIGGSGLFRFARGYVEARTHKFDATTGDATVEYNIYVLHY 188
             TI++LGRN VFS +REM V+GGSG+FR ARGYVEART  FD  TGDATVEYN YVLHY
Sbjct:    68 TITILGRNTVFSKVREMTVVGGSGIFRLARGYVEARTKWFDPKTGDATVEYNCYVLHY 125

GO:0003674 "molecular_function" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0009807 "lignan biosynthetic process" evidence=ISS

GO:0030048 "actin filament-based movement" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_5388000001 hypothetical protein (195 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	188
pfam03018	144	pfam03018, Dirigent, Dirigent-like protein	1e-73

>gnl|CDD|217321 pfam03018, Dirigent, Dirigent-like protein

 Score =  217 bits (556), Expect = 1e-73
 Identities = 81/146 (55%), Positives = 105/146 (71%), Gaps = 2/146 (1%)

Query: 42  KLSHFRLYWHDIYSGSNPTAVAVVAAPQKNSSTLFGAISMIDDPLTEGPELSSKLVGKAQ 101
           KL+H   Y HDI +G N TAV V + P   +S+ FG + +IDDPLTEGP+L+SKLVG+AQ
Sbjct: 1   KLTHLHFYMHDIVTGPNATAVQVASPP-GTNSSGFGTVVVIDDPLTEGPDLNSKLVGRAQ 59

Query: 102 GFYASAARDENGLMMVMNFAFMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGLFRFARG 161
           GFY  A++D   L+M   F F  G+YNGST++V+GRN VF  +RE+ V+GG+G FR ARG
Sbjct: 60  GFYVYASQDGLSLLMAFTFVFTSGEYNGSTLAVMGRNPVFEEVRELSVVGGTGKFRMARG 119

Query: 162 YVEARTHKFDATTGDATVEYNIYVLH 187
           Y  ART+ F  T+GDA VE N+YV H
Sbjct: 120 YALARTY-FSLTSGDAIVELNVYVKH 144

This family contains a number of proteins which are induced during disease response in plants. Members of this family are involved in lignification. Length = 144

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	188
PF03018	144	Dirigent: Dirigent-like protein; InterPro: IPR0042	100.0
PF06351	176	Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR	97.81
PLN02343	229	allene oxide cyclase	97.31

>PF03018 Dirigent: Dirigent-like protein; InterPro: IPR004265 This family contains a number of proteins which are induced during disease response in plants

Probab=100.00  E-value=4.6e-54  Score=342.36  Aligned_cols=144  Identities=52%  Similarity=0.925  Sum_probs=135.3

Q ss_pred             ceeEEEEEeeeecCCCCcceEEEeeCCCCCCCCCceeEEEEecccccCCCCCCcceeeEEEEEEEecCCCceeEEEEEEE
Q 029746           42 KLSHFRLYWHDIYSGSNPTAVAVVAAPQKNSSTLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAARDENGLMMVMNFA  121 (188)
Q Consensus        42 ~~t~l~fY~Hd~~sg~n~t~~~v~~~~~~~~~~~FG~v~v~Dd~lt~Gp~~~Sk~VGRAQG~~~~~s~~~~~~~~~~~~v  121 (188)
                      |++||+|||||+++|||+|++.|+.++.+ ...+||+++|+||||||||+++||+||||||+|+.+++++.+|+++++++
T Consensus         1 ~~t~l~fY~H~~~~g~n~t~~~v~~~~~~-~~~~FG~~~V~D~~lt~gp~~~S~~VGraqG~~~~~s~~~~~~~~~~~~v   79 (144)
T PF03018_consen    1 KETHLHFYMHDIVSGPNPTAVVVAEPPGP-SSSGFGTVVVFDDPLTEGPDPDSKLVGRAQGFYVSASLDGSSWFMSFTLV   79 (144)
T ss_pred             CceEEEEEeeecCCCCCCCEEEeccCCCC-CCCCCcEEEEEeeceEcCCCCCCccceEEEEEEEeecccCccEEEEEEEE
Confidence            57899999999999999999999988654 33399999999999999999999999999999999999999999999999


Q ss_pred             EccCcccCcEEEEeccccCCCCceeeEEEecccceeceEEEEEEEEEeecCCCCCeEEEEEEEEEe
Q 029746          122 FMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGLFRFARGYVEARTHKFDATTGDATVEYNIYVLH  187 (188)
Q Consensus       122 F~~g~~~GSTl~v~G~~~~~~~~rE~aVVGGTG~Fr~ArGya~~~t~~~~~~~~~~v~e~~v~v~h  187 (188)
                      |++++||||||+++|+++..+++||||||||||+||||||||+++++ .+.+..++|+|||||++|
T Consensus        80 F~~g~~~GStl~v~G~~~~~~~~~e~~VVGGTG~Fr~ArG~~~~~~~-~~~~~~~~v~e~~v~~~h  144 (144)
T PF03018_consen   80 FEDGEYNGSTLSVMGRDPFFEPVRELAVVGGTGEFRMARGYAKLRTV-FDSSGGNAVLELNVHLFH  144 (144)
T ss_pred             EEecccCCCeEEEeCCCcccCcccEEeEecCCCeEcceEEEEEEEEE-eecCCCCEEEEEEEEEEC
Confidence            99999999999999999988899999999999999999999999999 334478999999999998

>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5

Probab=97.81  E-value=0.001  Score=54.17  Aligned_cols=119  Identities=22%  Similarity=0.370  Sum_probs=76.0

Q ss_pred             cCceeEEEEE-eeeecCCCCcceEEEeeCCCCCCCCCceeEEEEecccccCCCCCCcceeeEEEEEEEec----CCCcee
Q 029746           40 EEKLSHFRLY-WHDIYSGSNPTAVAVVAAPQKNSSTLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAA----RDENGL  114 (188)
Q Consensus        40 ~~~~t~l~fY-~Hd~~sg~n~t~~~v~~~~~~~~~~~FG~v~v~Dd~lt~Gp~~~Sk~VGRAQG~~~~~s----~~~~~~  114 (188)
                      +.+...|++| +.|.-.| .|.-.++-+    .+....|+.+=+.|+|++|.-  -+-+|--+|+-+.-.    +.+..+
T Consensus         4 p~kvqel~vyeiNErdR~-SPa~L~ls~----k~~nslGDlvpFsNklY~g~l--~~rlGitaG~Cvliq~~p~k~Gdry   76 (176)
T PF06351_consen    4 PTKVQELSVYEINERDRG-SPAYLRLSQ----KSVNSLGDLVPFSNKLYDGDL--QKRLGITAGICVLIQHVPEKKGDRY   76 (176)
T ss_dssp             ----EEEEEEEE--S-S---S--B--SS----SSSS-TT-EEEEEEEEEETTS--S-EEEEEEEEEEEEEEECCCTEEEE
T ss_pred             ccceEEEEEEEEcccccC-CCcEEEccc----ccchhcccccccccccccchh--hhhhcccceEEEEEEeccccCCceE
Confidence            3455678888 4444322 233334321    344679999999999999987  678999999976533    244566


Q ss_pred             EEEEEEEEccCcccCcEEEEeccccCCCCceeeEEEecccceeceEEEEEEEEEee
Q 029746          115 MMVMNFAFMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGLFRFARGYVEARTHKF  170 (188)
Q Consensus       115 ~~~~~~vF~~g~~~GSTl~v~G~~~~~~~~rE~aVVGGTG~Fr~ArGya~~~t~~~  170 (188)
                      =-.+++.|-|   .| .|+++|..... +..-++|.||||-|+.|+|-++++.+-+
T Consensus        77 EaiySfyfGd---yG-hISvqGpy~t~-eDtyLAVTGGtGiF~g~~GqVkL~qivf  127 (176)
T PF06351_consen   77 EAIYSFYFGD---YG-HISVQGPYLTY-EDTYLAVTGGTGIFEGVYGQVKLHQIVF  127 (176)
T ss_dssp             EEEEEEE-GG---GE-EEEEEEEEETT-S-EEEEEEEEEETTTT-EEEEEEEEEET
T ss_pred             EEEEEEEecc---cc-eEEEecccccc-cceeEEEeccCceeecceEEEEEEEeec
Confidence            6777888865   34 79999986543 4567999999999999999999887754

3.99.6 from EC). The allene oxide cyclase (AOC)-catalysed step in jasmonate (JA) biosynthesis is important in the wound response of tomato [].; GO: 0016853 isomerase activity, 0009507 chloroplast; PDB: 2GIN_A 2DIO_B 2BRJ_B 2Q4I_B 1Z8K_A 1ZVC_A.

>PLN02343 allene oxide cyclase

Probab=97.31  E-value=0.017  Score=48.85  Aligned_cols=121  Identities=21%  Similarity=0.368  Sum_probs=85.7

Q ss_pred             CcCceeEEEEE-eeeecCCCCcceEEEeeCCCCCCCCCceeEEEEecccccCCCCCCcceeeEEEEEEEec----CCCce
Q 029746           39 KEEKLSHFRLY-WHDIYSGSNPTAVAVVAAPQKNSSTLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAA----RDENG  113 (188)
Q Consensus        39 ~~~~~t~l~fY-~Hd~~sg~n~t~~~v~~~~~~~~~~~FG~v~v~Dd~lt~Gp~~~Sk~VGRAQG~~~~~s----~~~~~  113 (188)
                      ++.+...|++| +.|.-.+ .|.-.+.-+.   ......|+++=|-+.|++|.-  -|-+|--.|+-+.-.    +.+..
T Consensus        53 ~p~kvQel~VYEiNErDR~-SPa~L~ls~k---~~~~sLGDlVPFsNKlY~g~L--~kRlGiTaG~Cvliq~~pek~gDr  126 (229)
T PLN02343         53 RPTKVQELSVYEINERDRG-SPAFLKLSKK---SVENALGDLVPFTNKLYTGDL--KKRLGITAGLCVLIQHVPEKKGDR  126 (229)
T ss_pred             CCceeEEEEEEEeccccCC-CcceEEcccC---cccccccceeccccccccchh--hhhhcccceeEEEEEeccccCCce
Confidence            34566677777 4443222 2333333222   122568999999999999865  477899999866533    34567


Q ss_pred             eEEEEEEEEccCcccCcEEEEeccccCCCCceeeEEEecccceeceEEEEEEEEEee
Q 029746          114 LMMVMNFAFMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGLFRFARGYVEARTHKF  170 (188)
Q Consensus       114 ~~~~~~~vF~~g~~~GSTl~v~G~~~~~~~~rE~aVVGGTG~Fr~ArGya~~~t~~~  170 (188)
                      +=..+++.|-|   .| .|+++|....- +..-++|.||+|-|..|+|-+++..+-+
T Consensus       127 yEa~ySfyfGD---yG-HisvqGpylty-eDt~LaiTGGsGiFega~GqvkL~qivf  178 (229)
T PLN02343        127 YEAIYSFYFGD---YG-HISVQGPYLTY-EDTYLAITGGSGIFEGAYGQVKLHQIVF  178 (229)
T ss_pred             eEEEEEEEecC---cc-eeEEecccccc-ccceEEeecCcceeecceeEEEEeeeee
Confidence            88888999976   35 79999986543 3457999999999999999999887664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	188
2brj_A	188	Arabidopsis thaliana genomic DNA, chromosome 3, TA	98.74
4h6b_A	195	Allene oxide cyclase; B-barrel, oxylipins, fatty a	98.44

>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A

Probab=98.74  E-value=2.8e-07  Score=74.75  Aligned_cols=130  Identities=19%  Similarity=0.326  Sum_probs=92.5

Q ss_pred             cCceeEEEEE-eeeecCCCCcceEEEeeCCCCCCCCCceeEEEEecccccCCCCCCcceeeEEEEEEEec----CCCcee
Q 029746           40 EEKLSHFRLY-WHDIYSGSNPTAVAVVAAPQKNSSTLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAA----RDENGL  114 (188)
Q Consensus        40 ~~~~t~l~fY-~Hd~~sg~n~t~~~v~~~~~~~~~~~FG~v~v~Dd~lt~Gp~~~Sk~VGRAQG~~~~~s----~~~~~~  114 (188)
                      +.+...|.+| +.|.-.+ .|.-.++-+    ++...-|+.+.++++|.+|..  -+.||.-+|+-+...    +.+..+
T Consensus        13 ~~~vq~l~vye~NE~dr~-sPa~L~l~~----k~~~slGDlvpFsNkLydg~l--~~rvG~taG~Cv~~~~~p~~~gdry   85 (188)
T 2brj_A           13 PSKVQELSVYEINELDRH-SPKILKNAF----SLMFGLGDLVPFTNKLYTGDL--KKRVGITAGLCVVIEHVPEKKGERF   85 (188)
T ss_dssp             --CCEEEEEEEECCSCSC-CCCCBCCCS----SSSSCTTCEEEECCEEEETTS--SCEEEEEEEEEEEEEEEGGGTEEEE
T ss_pred             ccceEEEEEEEecccccC-CCceEEccc----ccCcCcccEEeeccccccccc--ceeccccceEEEEEEecCCCCCcEE
Confidence            3455677777 4433222 232222221    234568999999999997765  589999999977664    345678


Q ss_pred             EEEEEEEEccCcccCcEEEEeccccCCCCceeeEEEecccceeceEEEEEEEEEeecCCCCCeEEEEEEEEE
Q 029746          115 MMVMNFAFMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGLFRFARGYVEARTHKFDATTGDATVEYNIYVL  186 (188)
Q Consensus       115 ~~~~~~vF~~g~~~GSTl~v~G~~~~~~~~rE~aVVGGTG~Fr~ArGya~~~t~~~~~~~~~~v~e~~v~v~  186 (188)
                      -..+++.|-+   .| .|+++|..... +...++|.||||.|+-|+|.++++.+.+.     ..++|.+|+.
T Consensus        86 E~tyS~yfgd---~G-hISvQGpy~t~-~Dt~LAITGGTGif~gA~G~Vkl~~i~~P-----~k~~yTf~L~  147 (188)
T 2brj_A           86 EATYSFYFGD---YG-HLSVQGPYLTY-EDSFLAITGGAGIFEGAYGQVKLQQLVYP-----TKLFYTFYLK  147 (188)
T ss_dssp             EEEEEEECGG---GE-EEEEEEEEETT-BCEEEEEEEEEETTTTCEEEEEEEEEETT-----TEEEEEEEEE
T ss_pred             EEEEEEEeCC---Cc-eEEEecccccc-ccceeeEecCcceEcceEEEEEEEeeccC-----ceEEEEEEEe
Confidence            8888888865   24 79999985322 45789999999999999999999988863     2578888764

>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*

Probab=98.44  E-value=6.9e-06  Score=66.83  Aligned_cols=123  Identities=18%  Similarity=0.296  Sum_probs=85.1

Q ss_pred             cCceeEEEEE-eeeecCCCCcceEEEeeCCCC---CCCCCceeEEEEecccccCCCCCCcceeeEEEEEEEec----CCC
Q 029746           40 EEKLSHFRLY-WHDIYSGSNPTAVAVVAAPQK---NSSTLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAA----RDE  111 (188)
Q Consensus        40 ~~~~t~l~fY-~Hd~~sg~n~t~~~v~~~~~~---~~~~~FG~v~v~Dd~lt~Gp~~~Sk~VGRAQG~~~~~s----~~~  111 (188)
                      +.+...|+.| +.|.-.+ .|.-.++-+-+.+   ..-...|+.+.+.++|++|..  -+-||...|+-+...    +.+
T Consensus        14 p~~vqel~VyEiNE~dr~-sPa~l~l~~k~~~~~~~~~~slGDLvpFsnkLydg~l--~~RiGitaG~Cv~i~~~~~k~G   90 (195)
T 4h6b_A           14 PGHVQELFVYEINERDRG-SPVFLPFGGKKQPGTDAHVNSLGDLVPFSNKIYDGSL--KTRLGITAGLCTLISHSDQKNG   90 (195)
T ss_dssp             --CCEEEEEEEECCSCSC-CCCCBCTTCCBCTTTCCBCCCTTCEEEECCEEEETTS--CCEEEEEEEEEEEEEEETTTTE
T ss_pred             CceeEEEEEEEecccccC-CcceeecccccCccccccccccccccccccccccccc--cccccccccEEEEEeecCCCCC
Confidence            4566688888 4444322 2322332211111   123569999999999999987  578999999976653    233


Q ss_pred             ceeEEEEEEEEccCcccCcEEEEeccccCCCCceeeEEEecccceeceEEEEEEEEEee
Q 029746          112 NGLMMVMNFAFMEGKYNGSTISVLGRNKVFSPMREMPVIGGSGLFRFARGYVEARTHKF  170 (188)
Q Consensus       112 ~~~~~~~~~vF~~g~~~GSTl~v~G~~~~~~~~rE~aVVGGTG~Fr~ArGya~~~t~~~  170 (188)
                      ..+--.+++.|.+   .| +|+++|..-. -...-++|+||||.|+.|+|-+++..+-+
T Consensus        91 dryEci~Tf~fGD---~G-hIsvqGpy~t-~eDs~lAITGGTGiF~Ga~GqVkl~qiv~  144 (195)
T 4h6b_A           91 DRYEALYSFYFGD---YG-HISVQGPYIT-YEDSYLAITGGSGIFAGCYGQAKLHQIIF  144 (195)
T ss_dssp             EEEEEEEEEECGG---GC-EEEEEEEEET-TBCEEEEEEEESGGGTTCEEEEEEEEEET
T ss_pred             ceEEEEEEEEecC---Cc-eEEEecceec-cCceeEEEecCcceEcccEEEEEEeEeee
Confidence            4566677788866   46 6999998633 24567999999999999999999887765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	188
d2brja1	174	Allene oxide cyclase, AOC {Thale cress (Arabidopsi	97.64

>d2brja1 b.159.1.1 (A:15-188) Allene oxide cyclase, AOC {Thale cress (Arabidopsis thaliana), chloroplast AOC2 [TaxId: 3702]}

class: All beta proteins
fold: AOC barrel-like
superfamily: Allene oxide cyclase-like
family: Allene oxide cyclase-like
domain: Allene oxide cyclase, AOC
species: Thale cress (Arabidopsis thaliana), chloroplast AOC2 [TaxId: 3702]

Probab=97.64  E-value=0.00068  Score=52.13  Aligned_cols=93  Identities=22%  Similarity=0.317  Sum_probs=74.0

Q ss_pred             CCCCCceeEEEEecccccCCCCCCcceeeEEEEEEEecC----CCceeEEEEEEEEccCcccCcEEEEeccccCCCCcee
Q 029746           71 NSSTLFGAISMIDDPLTEGPELSSKLVGKAQGFYASAAR----DENGLMMVMNFAFMEGKYNGSTISVLGRNKVFSPMRE  146 (188)
Q Consensus        71 ~~~~~FG~v~v~Dd~lt~Gp~~~Sk~VGRAQG~~~~~s~----~~~~~~~~~~~vF~~g~~~GSTl~v~G~~~~~~~~rE  146 (188)
                      +.....|+.+=|-|+|+.|.-  -|-+|--.|+-+.-..    .+..+-..+++.|-|   .| .|++||....- +..-
T Consensus        26 ~~~n~lGDlVpFsNkly~g~l--~kRlGitaG~C~liq~~pek~gdryEa~ySfyfGD---yG-hISvqGpylty-eDty   98 (174)
T d2brja1          26 SLMFGLGDLVPFTNKLYTGDL--KKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGD---YG-HLSVQGPYLTY-EDSF   98 (174)
T ss_dssp             SSSSCTTCEEEECCEEEETTS--SCEEEEEEEEEEEEEEEGGGTEEEEEEEEEEECGG---GE-EEEEEEEEETT-BCEE
T ss_pred             cccccccccccccchhcccch--hhhccceeeEEEEEEecCCcCcceeEEEEEEEecC---cc-cEEEecccccc-ccce
Confidence            345679999999999997765  5789999998765442    445677888889977   34 79999987643 3467


Q ss_pred             eEEEecccceeceEEEEEEEEEee
Q 029746          147 MPVIGGSGLFRFARGYVEARTHKF  170 (188)
Q Consensus       147 ~aVVGGTG~Fr~ArGya~~~t~~~  170 (188)
                      ++|+||||-|+.|+|-+++..+-+
T Consensus        99 laiTGGsGiFeGa~GqVkL~qivf  122 (174)
T d2brja1          99 LAITGGAGIFEGAYGQVKLQQLVY  122 (174)
T ss_dssp             EEEEEEEETTTTCEEEEEEEEEET
T ss_pred             eeeecccceeecceeEEEEeeeee
Confidence            999999999999999999887764