Citrus Sinensis ID: 029747

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MLKQVVGKVLNNWLVANGGEKAIRPFLYVPTSSLHQGQVLNAPRSFFGVEDFLDDDNSRPYTYKKEKKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLD
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHcccccccccEEEEcccccccccEEcccccccccccccccccccccHHHHHHHHccccccccccccccccccccEEEEEcccccEEEEEEEccccEEEEEEccccHHHHHHHcccccHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHcccEEEEEcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccEEccccccEEEEEEEcccccccccEEcccccccccccccccccccccccccccHHHHccccccHcccccccccccEEEEEEcccEEEEEEEEccccEEEEEEccccHHHHHHHcccccHHHHHHHHHHHHHHHHHccccEEEEccccccEEccHHHHHHHHHHHcccEEEEEcc
Coil and Loop (DISEMBL)
MLKQVVGKVLNNWLVanggekairpflyvptsslhqgqvlnaprsffgvedfldddnsrpytykkekksknttkhisfkqrtvaymepftLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAReadvytasytprerdkfEGKIRAVVQSLIDngidvkiyld
Flexible Loop (DISEMBL)
MLKQVVGKVLNNWLVANGGEKAIRPFLYVPTSSLHQGQVLNAPRSFFGVedfldddnsrpytykkekksknttkhisfkqrtvayMEPFTLDVFISKRFVSASlthrvtskqvavagtnskdikavlrsrsdipaCLAIGRILaerareadvytasytprerdkfegKIRAVVQslidngidvkiyld
Low Complexity Region (SEG)
MLKQVVGKVLNNWLVANGGEKAIRPFLYVPTSSLHQGQVLNAPRSFFGVEDFLDDDNSRPYtykkekksknttkHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLD
Disordered region (IsUnstruct)
****VVGKVLNNWLVANGGEKAIRPFLYVPTSSLHQGQVLNAPRSFFGVEDFL***********************SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYL*
Disordered Region (DISOPRED)
*******KVLNNWLVANGGEKAIRPFLYVPTSSLHQGQVLNAPRSFFGVEDFLDD******************************MEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSK**********DIPACLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIY**
Disordered Region (DISEMBL)
MLKQVVGKVLNNWLVANGGEKAIRPFLYVPTSSLHQGQVLNAPRSFFGVEDFLDDDNSRPYTYK**********HISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLD
Disordered Region (DISPRO)
MLKQVVGKVLNNWLVANGGEKAIRPFLYVPTSSLHQGQVLNAPRSFFGVEDFLDDDNSRPYTYK****************RTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLKQVVGKVLNNWLVANGGEKAIRPFLYVPTSSLHQGQVLNAPRSFFGVEDFLDDDNSRPYTYKKEKKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	188	2.2.26 [Sep-21-2011]
Q83ER0	117	50S ribosomal protein L18	yes	no	0.484	0.777	0.293	0.0004
A9NAY6	117	50S ribosomal protein L18	yes	no	0.484	0.777	0.293	0.0004
A9KD15	117	50S ribosomal protein L18	yes	no	0.484	0.777	0.293	0.0004
B6J247	117	50S ribosomal protein L18	yes	no	0.484	0.777	0.293	0.0004
B6J5E8	117	50S ribosomal protein L18	yes	no	0.484	0.777	0.293	0.0004

>sp|Q83ER0|RL18_COXBU 50S ribosomal protein L18 OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=rplR PE=3 SV=1

 Score = 44.7 bits (104), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 91  LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
           L V  S   + A L     SK +  A T  K++++ ++   +I A  AIG+++A+RA++A
Sbjct: 26  LCVHRSLNHIYAQLISPRDSKVLVCASTLEKEVRSQIKHGGNIQAATAIGKLIAQRAKKA 85

Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
            V   ++  R   K+ G++RA+ +++ + GI+
Sbjct: 86  GVTKVAF-DRSGYKYHGRVRALAEAVREGGIE 116

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
Coxiella burnetii (strain RSA 493 / Nine Mile phase I) (taxid: 227377)

>sp|A9NAY6|RL18_COXBR 50S ribosomal protein L18 OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=rplR PE=3 SV=1

 Score = 44.7 bits (104), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 91  LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
           L V  S   + A L     SK +  A T  K++++ ++   +I A  AIG+++A+RA++A
Sbjct: 26  LCVHRSLNHIYAQLISPRDSKVLVCASTLEKEVRSQIKHGGNIQAATAIGKLIAQRAKKA 85

Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
            V   ++  R   K+ G++RA+ +++ + GI+
Sbjct: 86  GVTKVAF-DRSGYKYHGRVRALAEAVREGGIE 116

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.

Coxiella burnetii (strain RSA 331 / Henzerling II) (taxid: 360115)

>sp|A9KD15|RL18_COXBN 50S ribosomal protein L18 OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rplR PE=3 SV=1

 Score = 44.7 bits (104), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 91  LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
           L V  S   + A L     SK +  A T  K++++ ++   +I A  AIG+++A+RA++A
Sbjct: 26  LCVHRSLNHIYAQLISPRDSKVLVCASTLEKEVRSQIKHGGNIQAATAIGKLIAQRAKKA 85

Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
            V   ++  R   K+ G++RA+ +++ + GI+
Sbjct: 86  GVTKVAF-DRSGYKYHGRVRALAEAVREGGIE 116

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.

Coxiella burnetii (strain Dugway 5J108-111) (taxid: 434922)

>sp|B6J247|RL18_COXB2 50S ribosomal protein L18 OS=Coxiella burnetii (strain CbuG_Q212) GN=rplR PE=3 SV=1

 Score = 44.7 bits (104), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 91  LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
           L V  S   + A L     SK +  A T  K++++ ++   +I A  AIG+++A+RA++A
Sbjct: 26  LCVHRSLNHIYAQLISPRDSKVLVCASTLEKEVRSQIKHGGNIQAATAIGKLIAQRAKKA 85

Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
            V   ++  R   K+ G++RA+ +++ + GI+
Sbjct: 86  GVTKVAF-DRSGYKYHGRVRALAEAVREGGIE 116

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.

Coxiella burnetii (strain CbuG_Q212) (taxid: 434923)

>sp|B6J5E8|RL18_COXB1 50S ribosomal protein L18 OS=Coxiella burnetii (strain CbuK_Q154) GN=rplR PE=3 SV=1

 Score = 44.7 bits (104), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 91  LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
           L V  S   + A L     SK +  A T  K++++ ++   +I A  AIG+++A+RA++A
Sbjct: 26  LCVHRSLNHIYAQLISPRDSKVLVCASTLEKEVRSQIKHGGNIQAATAIGKLIAQRAKKA 85

Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
            V   ++  R   K+ G++RA+ +++ + GI+
Sbjct: 86  GVTKVAF-DRSGYKYHGRVRALAEAVREGGIE 116

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.

Coxiella burnetii (strain CbuK_Q154) (taxid: 434924)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
224125410	187	predicted protein [Populus trichocarpa]	0.994	1.0	0.861	8e-89
255588441	188	structural constituent of ribosome, puta	0.994	0.994	0.835	5e-85
356508210	187	PREDICTED: uncharacterized protein LOC10	0.994	1.0	0.803	7e-84
359487879	187	PREDICTED: uncharacterized protein LOC10	0.994	1.0	0.829	1e-83
356517682	202	PREDICTED: uncharacterized protein LOC10	0.994	0.925	0.803	1e-83
238478415	234	Ribosomal L.8/L5e family protein [Arabid	1.0	0.803	0.751	9e-79
30680844	189	Ribosomal L.8/L5e family protein [Arabid	1.0	0.994	0.751	1e-78
449442869	187	PREDICTED: uncharacterized protein LOC10	0.994	1.0	0.808	2e-78
297843672	189	structural constituent of ribosome [Arab	1.0	0.994	0.746	2e-77
242040201	187	hypothetical protein SORBIDRAFT_01g02910	0.872	0.877	0.823	3e-75

>gi|224125410|ref|XP_002319579.1| predicted protein [Populus trichocarpa] gi|222857955|gb|EEE95502.1| predicted protein [Populus trichocarpa]

 Score =  331 bits (849), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 162/188 (86%), Positives = 171/188 (90%), Gaps = 1/188 (0%)

Query: 1   MLKQVVGKVLNNWLVANGGEKAIRPFLYVPTSSLHQGQVLNAPRSFFGVEDFLDDDNSRP 60
           MLKQV GKVLN    ANGG+K +RP LYVP +  H GQ   APRSFFGVEDFLDDDNSRP
Sbjct: 1   MLKQVFGKVLNKGFFANGGDK-LRPGLYVPNTGFHNGQAHCAPRSFFGVEDFLDDDNSRP 59

Query: 61  YTYKKEKKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNS 120
           YTY+K KKSKN  KH+SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNS
Sbjct: 60  YTYQKGKKSKNPNKHLSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNS 119

Query: 121 KDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNG 180
           KDIKAVL+SRSDIPACLA+G+ILA+RAREADVYTASYTPRERDKFEGKIRAVVQSLIDNG
Sbjct: 120 KDIKAVLKSRSDIPACLAVGQILADRAREADVYTASYTPRERDKFEGKIRAVVQSLIDNG 179

Query: 181 IDVKIYLD 188
           IDVKIYLD
Sbjct: 180 IDVKIYLD 187

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255588441|ref|XP_002534606.1| structural constituent of ribosome, putative [Ricinus communis] gi|223524931|gb|EEF27777.1| structural constituent of ribosome, putative [Ricinus communis]

 Score =  318 bits (816), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 158/189 (83%), Positives = 170/189 (89%), Gaps = 2/189 (1%)

Query: 1   MLKQVVGKVLNNWLVANGGEKAIRPFLYVPTSSLHQGQVLNAPRSFFGVEDFLDDDNSRP 60
           MLKQV+GK+++     NGG+K +R  LYVP S  H GQV  +PRSFFGVEDFLDDDNSRP
Sbjct: 1   MLKQVLGKIIHRGPFLNGGDK-LRLSLYVPGSCFHNGQVHYSPRSFFGVEDFLDDDNSRP 59

Query: 61  YTYKKEKKSKN-TTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTN 119
           YTY+KEKKSKN   KH+SFKQRT AYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTN
Sbjct: 60  YTYQKEKKSKNPNNKHMSFKQRTKAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTN 119

Query: 120 SKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDN 179
           SKDIKA LRSRSDIPACLAIGRIL+ERAREADVYTASYTPRERDKFEGKIRAVVQSLIDN
Sbjct: 120 SKDIKAALRSRSDIPACLAIGRILSERAREADVYTASYTPRERDKFEGKIRAVVQSLIDN 179

Query: 180 GIDVKIYLD 188
           GID+K+YLD
Sbjct: 180 GIDIKVYLD 188

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508210|ref|XP_003522852.1| PREDICTED: uncharacterized protein LOC100804348 [Glycine max]

 Score =  315 bits (806), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 151/188 (80%), Positives = 167/188 (88%), Gaps = 1/188 (0%)

Query: 1   MLKQVVGKVLNNWLVANGGEKAIRPFLYVPTSSLHQGQVLNAPRSFFGVEDFLDDDNSRP 60
           MLKQ +G++    + A  G + + P++YVP+S  H GQ   APRSFFGVEDFLDDDNSRP
Sbjct: 1   MLKQAIGRIFRTGVYACEGNRVL-PWIYVPSSFFHHGQAHMAPRSFFGVEDFLDDDNSRP 59

Query: 61  YTYKKEKKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNS 120
           YTY+K KKSKN  KHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNS
Sbjct: 60  YTYQKGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNS 119

Query: 121 KDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNG 180
           KDIKAVLRSRSDIPAC+AIGRILAERA+EADVYT SYTPR+RDKFEGKIRAVVQSLIDNG
Sbjct: 120 KDIKAVLRSRSDIPACIAIGRILAERAKEADVYTGSYTPRDRDKFEGKIRAVVQSLIDNG 179

Query: 181 IDVKIYLD 188
           ID+K+YLD
Sbjct: 180 IDIKVYLD 187

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487879|ref|XP_002266607.2| PREDICTED: uncharacterized protein LOC100250278 [Vitis vinifera] gi|298204993|emb|CBI34300.3| unnamed protein product [Vitis vinifera]

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 156/188 (82%), Positives = 167/188 (88%), Gaps = 1/188 (0%)

Query: 1   MLKQVVGKVLNNWLVANGGEKAIRPFLYVPTSSLHQGQVLNAPRSFFGVEDFLDDDNSRP 60
           MLK + GK+    + ANG ++  RP LYVPTS  H G+   APRSFFGVEDFLDDDNSRP
Sbjct: 1   MLKHLSGKLWIKGVWANGRDQ-FRPCLYVPTSGFHNGKAHLAPRSFFGVEDFLDDDNSRP 59

Query: 61  YTYKKEKKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNS 120
           YTY+KEKKSKN  KHISFKQRT AYMEPFTLDV ISKRFVSASLTHRVTSKQVAVAGTNS
Sbjct: 60  YTYQKEKKSKNPNKHISFKQRTGAYMEPFTLDVLISKRFVSASLTHRVTSKQVAVAGTNS 119

Query: 121 KDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNG 180
           KDIKAVL+SRSDIPACLAIGRIL+ERAREADVYTASYTPR+RDKFEGKIRAVVQSLIDNG
Sbjct: 120 KDIKAVLKSRSDIPACLAIGRILSERAREADVYTASYTPRDRDKFEGKIRAVVQSLIDNG 179

Query: 181 IDVKIYLD 188
           IDVK+YLD
Sbjct: 180 IDVKVYLD 187

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517682|ref|XP_003527515.1| PREDICTED: uncharacterized protein LOC100805468 [Glycine max]

 Score =  314 bits (804), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 151/188 (80%), Positives = 167/188 (88%), Gaps = 1/188 (0%)

Query: 1   MLKQVVGKVLNNWLVANGGEKAIRPFLYVPTSSLHQGQVLNAPRSFFGVEDFLDDDNSRP 60
           MLKQV+G++    + A  G + + P++YVP+   H GQ   APRSFFGVEDFLDDDNSRP
Sbjct: 16  MLKQVIGRICRTDVYACEGNRVL-PWIYVPSCFFHHGQAHMAPRSFFGVEDFLDDDNSRP 74

Query: 61  YTYKKEKKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNS 120
           YTY+K KKSKN  KHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNS
Sbjct: 75  YTYQKGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNS 134

Query: 121 KDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNG 180
           KDIKAVLRSRSDIPAC+AIGRILAERA+EADVYT SYTPR+RDKFEGKIRAVVQSLIDNG
Sbjct: 135 KDIKAVLRSRSDIPACIAIGRILAERAKEADVYTGSYTPRDRDKFEGKIRAVVQSLIDNG 194

Query: 181 IDVKIYLD 188
           ID+K+YLD
Sbjct: 195 IDIKVYLD 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238478415|ref|NP_001154322.1| Ribosomal L.8/L5e family protein [Arabidopsis thaliana] gi|332190238|gb|AEE28359.1| Ribosomal L.8/L5e family protein [Arabidopsis thaliana]

 Score =  298 bits (762), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 142/189 (75%), Positives = 162/189 (85%), Gaps = 1/189 (0%)

Query: 1   MLKQVVGKV-LNNWLVANGGEKAIRPFLYVPTSSLHQGQVLNAPRSFFGVEDFLDDDNSR 59
           MLKQVV K  +    +     + +RPF+   +   H G+ + APRSFFGVED++DDD SR
Sbjct: 46  MLKQVVAKYSIGKAAIYGSNREKLRPFMCQTSCRFHNGRTVFAPRSFFGVEDYVDDDTSR 105

Query: 60  PYTYKKEKKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTN 119
           PYTY+KEKKSKN  KH+SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVT +QVAVAGTN
Sbjct: 106 PYTYQKEKKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTN 165

Query: 120 SKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDN 179
           SKD+KAVLRSR DIPAC++IGRIL+ERA+EADVYTASYTPR++DKFEGKIRAVVQSLIDN
Sbjct: 166 SKDVKAVLRSRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDN 225

Query: 180 GIDVKIYLD 188
           GIDVKIYLD
Sbjct: 226 GIDVKIYLD 234

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680844|ref|NP_849617.1| Ribosomal L.8/L5e family protein [Arabidopsis thaliana] gi|26453256|dbj|BAC43701.1| unknown protein [Arabidopsis thaliana] gi|28372952|gb|AAO39958.1| At1g08850 [Arabidopsis thaliana] gi|332190237|gb|AEE28358.1| Ribosomal L.8/L5e family protein [Arabidopsis thaliana]

 Score =  297 bits (760), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 142/189 (75%), Positives = 162/189 (85%), Gaps = 1/189 (0%)

Query: 1   MLKQVVGKV-LNNWLVANGGEKAIRPFLYVPTSSLHQGQVLNAPRSFFGVEDFLDDDNSR 59
           MLKQVV K  +    +     + +RPF+   +   H G+ + APRSFFGVED++DDD SR
Sbjct: 1   MLKQVVAKYSIGKAAIYGSNREKLRPFMCQTSCRFHNGRTVFAPRSFFGVEDYVDDDTSR 60

Query: 60  PYTYKKEKKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTN 119
           PYTY+KEKKSKN  KH+SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVT +QVAVAGTN
Sbjct: 61  PYTYQKEKKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTN 120

Query: 120 SKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDN 179
           SKD+KAVLRSR DIPAC++IGRIL+ERA+EADVYTASYTPR++DKFEGKIRAVVQSLIDN
Sbjct: 121 SKDVKAVLRSRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDN 180

Query: 180 GIDVKIYLD 188
           GIDVKIYLD
Sbjct: 181 GIDVKIYLD 189

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442869|ref|XP_004139203.1| PREDICTED: uncharacterized protein LOC101215592 [Cucumis sativus] gi|449525565|ref|XP_004169787.1| PREDICTED: uncharacterized LOC101215592 [Cucumis sativus]

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 152/188 (80%), Positives = 166/188 (88%), Gaps = 1/188 (0%)

Query: 1   MLKQVVGKVLNNWLVANGGEKAIRPFLYVPTSSLHQGQVLNAPRSFFGVEDFLDDDNSRP 60
           MLK  +G +  + + A    +  RP+L VPTS  H+G+V  APRSFFG+EDFLDDDNSRP
Sbjct: 1   MLKHFLGNMRKHVVCACEVNR-FRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRP 59

Query: 61  YTYKKEKKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNS 120
           YTY+K KKSKN  KHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVT KQVAVAGTNS
Sbjct: 60  YTYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNS 119

Query: 121 KDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNG 180
           KDIKAVL+SRSDIPACLA+GRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNG
Sbjct: 120 KDIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNG 179

Query: 181 IDVKIYLD 188
           IDVKIYL+
Sbjct: 180 IDVKIYLE 187

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843672|ref|XP_002889717.1| structural constituent of ribosome [Arabidopsis lyrata subsp. lyrata] gi|297335559|gb|EFH65976.1| structural constituent of ribosome [Arabidopsis lyrata subsp. lyrata]

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 141/189 (74%), Positives = 161/189 (85%), Gaps = 1/189 (0%)

Query: 1   MLKQVVGKV-LNNWLVANGGEKAIRPFLYVPTSSLHQGQVLNAPRSFFGVEDFLDDDNSR 59
           MLKQVV K  +    +     + +RPFL   +   H  + + APRSFFGVED++DDD SR
Sbjct: 1   MLKQVVTKYSIGKAAIYGSNREKLRPFLCQTSCRFHNARTVFAPRSFFGVEDYVDDDTSR 60

Query: 60  PYTYKKEKKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTN 119
           PYTY+KEKKSKN  KH+SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVT +QVAVAGTN
Sbjct: 61  PYTYQKEKKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTN 120

Query: 120 SKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDN 179
           SKD+KAVLRSR DIPAC++IGRIL+ERA+EADVYTASYTPR+++KFEGKIRAVVQSLIDN
Sbjct: 121 SKDVKAVLRSRCDIPACMSIGRILSERAKEADVYTASYTPRDQEKFEGKIRAVVQSLIDN 180

Query: 180 GIDVKIYLD 188
           GIDVKIYLD
Sbjct: 181 GIDVKIYLD 189

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242040201|ref|XP_002467495.1| hypothetical protein SORBIDRAFT_01g029100 [Sorghum bicolor] gi|241921349|gb|EER94493.1| hypothetical protein SORBIDRAFT_01g029100 [Sorghum bicolor]

 Score =  286 bits (732), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 135/164 (82%), Positives = 149/164 (90%)

Query: 25  PFLYVPTSSLHQGQVLNAPRSFFGVEDFLDDDNSRPYTYKKEKKSKNTTKHISFKQRTVA 84
           P L    S  H GQVL++ RSFFGVEDF+D+DNSRPYTYKKEK+SKN  KHISFKQRT+A
Sbjct: 24  PALLTCWSQFHSGQVLSSSRSFFGVEDFVDEDNSRPYTYKKEKRSKNPHKHISFKQRTIA 83

Query: 85  YMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILA 144
           YMEPFTLDVFISKRFVSASLTHR T +QVAVAGTNSKDIKAVL+SRSDIPACLA+GR LA
Sbjct: 84  YMEPFTLDVFISKRFVSASLTHRSTCRQVAVAGTNSKDIKAVLKSRSDIPACLAVGRFLA 143

Query: 145 ERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLD 188
           ERA+EADV+T +YTPRERDKFEGKIRAVVQSLIDNGI+VK+YLD
Sbjct: 144 ERAKEADVFTCTYTPRERDKFEGKIRAVVQSLIDNGINVKLYLD 187

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
TAIR|locus:1005716736	234	AT1G08845 [Arabidopsis thalian	1.0	0.803	0.698	2e-65
TAIR|locus:2077016	311	AT3G22450 [Arabidopsis thalian	0.590	0.356	0.504	5.9e-25
TAIR|locus:2087535	187	AT3G20230 [Arabidopsis thalian	0.558	0.561	0.476	7.8e-23
TAIR|locus:2180310	114	AT5G27820 [Arabidopsis thalian	0.537	0.885	0.257	3.6e-09
TIGR_CMR|CBU_0254	117	CBU_0254 "ribosomal protein L1	0.484	0.777	0.293	4.8e-07
TIGR_CMR|SPO_0501	119	SPO_0501 "ribosomal protein L1	0.478	0.756	0.311	4.3e-06
TIGR_CMR|GSU_2841	122	GSU_2841 "ribosomal protein L1	0.478	0.737	0.263	8.7e-05
UNIPROTKB|Q9KP00	117	rplR "50S ribosomal protein L1	0.537	0.863	0.274	0.00011
TIGR_CMR|SO_0247	116	SO_0247 "ribosomal protein L18	0.361	0.586	0.318	0.00011
TIGR_CMR|VC_2580	117	VC_2580 "ribosomal protein L18	0.537	0.863	0.274	0.00011

TAIR|locus:1005716736 AT1G08845 [Arabidopsis thaliana (taxid:3702)]

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 132/189 (69%), Positives = 151/189 (79%)

Query:     1 MLKQVVGKV-LNNWLVANGGEKAIRPFLYVPTSSLHQGQVLNAPRSFFGVEDFLDDDNSR 59
             MLKQVV K  +    +     + +RPF+   +   H G+ + APRSFFGVED++DDD SR
Sbjct:    46 MLKQVVAKYSIGKAAIYGSNREKLRPFMCQTSCRFHNGRTVFAPRSFFGVEDYVDDDTSR 105

Query:    60 PYXXXXXXXXXXXXXHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTN 119
             PY             H+SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVT +QVAVAGTN
Sbjct:   106 PYTYQKEKKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTN 165

Query:   120 SKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDN 179
             SKD+KAVLRSR DIPAC++IGRIL+ERA+EADVYTASYTPR++DKFEGKIRAVVQSLIDN
Sbjct:   166 SKDVKAVLRSRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDN 225

Query:   180 GIDVKIYLD 188
             GIDVKIYLD
Sbjct:   226 GIDVKIYLD 234

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

TAIR|locus:2077016 AT3G22450 [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 56/111 (50%), Positives = 79/111 (71%)

Query:    77 SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPAC 136
             +F Q T  +  PF LD++ISK  V A + HRVTSK V VA + SKD+K  L SR ++ AC
Sbjct:   186 TFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGSRRNVAAC 245

Query:   137 LAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYL 187
              A+G +LA+R+ E D++   YTPR+ DK EGK++ V+Q+LIDNG++VK+ L
Sbjct:   246 AAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGVNVKVKL 296

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

TAIR|locus:2087535 AT3G20230 [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 50/105 (47%), Positives = 75/105 (71%)

Query:    77 SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPAC 136
             S+KQRT  YM PF L+VF S++F+ A + HR TSK ++VA TN++DI+  + S  D  AC
Sbjct:    79 SWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSLVDNEAC 138

Query:   137 LAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
               IG+++AER+ EADVY  SY PR+ ++ EGK+  V+ ++ ++GI
Sbjct:   139 RLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TAIR|locus:2180310 AT5G27820 [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 26/101 (25%), Positives = 52/101 (51%)

Query:    81 RTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIG 140
             R   Y++P+ L +  + +FV A + H  T+     A +  K ++  +    D+ A   IG
Sbjct:    11 RLFDYLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITRDVAAASKIG 70

Query:   141 RILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
             +IL ER    D+   +   ++  ++ GK++AV+ S+ + G+
Sbjct:    71 KILGERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGV 111

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TIGR_CMR|CBU_0254 CBU_0254 "ribosomal protein L18" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 27/92 (29%), Positives = 53/92 (57%)

Query:    91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
             L V  S   + A L     SK +  A T  K++++ ++   +I A  AIG+++A+RA++A
Sbjct:    26 LCVHRSLNHIYAQLISPRDSKVLVCASTLEKEVRSQIKHGGNIQAATAIGKLIAQRAKKA 85

Query:   151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
              V   ++  R   K+ G++RA+ +++ + GI+
Sbjct:    86 GVTKVAFD-RSGYKYHGRVRALAEAVREGGIE 116

GO:0003735 "structural constituent of ribosome" evidence=ISS

TIGR_CMR|SPO_0501 SPO_0501 "ribosomal protein L18" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 29/93 (31%), Positives = 48/93 (51%)

Query:    91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
             L V  S + +SA L   V    +A A T  KD+  V   ++++ A   +G  +AERA++A
Sbjct:    30 LSVHRSNKNISAQLIDDVRGVTLAAASTMEKDLGVV--GKNNVEAAKKVGAAIAERAKKA 87

Query:   151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGIDV 183
              V  A Y  R    F GK++A+  +  + G+ +
Sbjct:    88 GVEEA-YFDRGGFLFHGKVKALADAAREGGLKI 119

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

TIGR_CMR|GSU_2841 GSU_2841 "ribosomal protein L18" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 95 (38.5 bits), Expect = 8.7e-05, P = 8.7e-05
 Identities = 24/91 (26%), Positives = 45/91 (49%)

Query:    91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
             L+VF S + + A +    T   +  A T  K+    L    ++ A   +G ++A+RA E 
Sbjct:    31 LNVFKSAQHIYAQIIDDTTGTTLVSASTVQKEASESLNHCGNVEAAKRVGALIAKRALEK 90

Query:   151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
             ++ T  +  R    + G+I+A+  S  +NG+
Sbjct:    91 NIATVVFD-RNGFLYHGRIKALADSARENGL 120

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

UNIPROTKB|Q9KP00 rplR "50S ribosomal protein L18" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 94 (38.1 bits), Expect = 0.00011, P = 0.00011
 Identities = 28/102 (27%), Positives = 51/102 (50%)

Query:    80 QRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAI 139
             +R +A +    L V  + R V A +     S+ +A A T  K I+  ++   +I A  A+
Sbjct:    15 RRKIAELGATRLVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGNIDAAKAV 74

Query:   140 GRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
             G+ +AERA E  V   ++  R   ++ G++ A+  S  + G+
Sbjct:    75 GKAVAERALEKGVTVVAFD-RSGFQYHGRVAALADSAREAGL 115

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|SO_0247 SO_0247 "ribosomal protein L18" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 94 (38.1 bits), Expect = 0.00011, P = 0.00011
 Identities = 22/69 (31%), Positives = 38/69 (55%)

Query:   113 VAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKIRAV 172
             VA A T  K +K  L+S  ++ A  A+G+ +AERA E  V   ++  R   K+ G++ A+
Sbjct:    47 VAAASTVEKAVKEQLKSTGNVDAAKAVGKFVAERAIEKGVTNVAFD-RSGFKYHGRVAAL 105

Query:   173 VQSLIDNGI 181
               +  + G+
Sbjct:   106 ADAAREAGL 114

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|VC_2580 VC_2580 "ribosomal protein L18" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 94 (38.1 bits), Expect = 0.00011, P = 0.00011
 Identities = 28/102 (27%), Positives = 51/102 (50%)

Query:    80 QRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAI 139
             +R +A +    L V  + R V A +     S+ +A A T  K I+  ++   +I A  A+
Sbjct:    15 RRKIAELGATRLVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGNIDAAKAV 74

Query:   140 GRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
             G+ +AERA E  V   ++  R   ++ G++ A+  S  + G+
Sbjct:    75 GKAVAERALEKGVTVVAFD-RSGFQYHGRVAALADSAREAGL 115

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00130278 hypothetical protein (188 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	188
cd00432	103	cd00432, Ribosomal_L18_L5e, Ribosomal L18/L5e: L18	4e-20
COG0256	125	COG0256, RplR, Ribosomal protein L18 [Translation,	3e-05
pfam00861	119	pfam00861, Ribosomal_L18p, Ribosomal L18p/L5e fami	5e-05

>gnl|CDD|238246 cd00432, Ribosomal_L18_L5e, Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit

 Score = 80.3 bits (199), Expect = 4e-20
 Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 1/103 (0%)

Query: 79  KQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLA 138
           +++ +   E   L V  S + + A +      K +  A T    IK VL S +++ A   
Sbjct: 2   RRKRLGTQERPRLVVRKSNKHIYAQIIDDSGDKTLVSASTLELAIKGVLGSGNNVEAAYL 61

Query: 139 IGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
           +GR+LA+RA E  +    +  R   ++ G+++A+ +   + G+
Sbjct: 62  VGRLLAKRALEKGIKKVVF-DRGGYRYHGRVKALAKGAREGGL 103

L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified. Length = 103

>gnl|CDD|223334 COG0256, RplR, Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]

 Score = 41.4 bits (98), Expect = 3e-05
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 3/95 (3%)

Query: 91  LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKA--VLRSRSDIPACLAIGRILAERAR 148
           L V  S R + A +   V    +A A T SK+++         +  A   +G+++AERA 
Sbjct: 32  LVVRRSNRHIYAQIIDDVKGGTLASASTLSKELRKYGKKGGGGNTEAAYLVGKLIAERAL 91

Query: 149 EADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDV 183
              +    +  R   K+ G++ A+     + G++ 
Sbjct: 92  AKGIEEVVFD-RGGYKYHGRVAALADGAREAGLEF 125

Length = 125

>gnl|CDD|216159 pfam00861, Ribosomal_L18p, Ribosomal L18p/L5e family

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 19/95 (20%), Positives = 42/95 (44%), Gaps = 3/95 (3%)

Query: 91  LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKA--VLRSRSDIPACLAIGRILAERAR 148
           L V  S + + A +        +  A T SK++K   +    ++  A   +G +LA+RA 
Sbjct: 26  LVVRRSNKHIYAQIIDDTKGGTLVSASTLSKELKKYGLKGGGNNTAAAYLVGLLLAKRAL 85

Query: 149 EADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDV 183
           +  +    +  R    + G++ A+ +   + G++ 
Sbjct: 86  KKGIAVVVFD-RGGYTYHGRVFALAKGAREAGLNF 119

This family includes ribosomal proteins from the large subunit. This family includes L18 from bacteria and L5 from eukaryotes. It has been shown that the amino terminal 93 amino acids of rat Rpl5 are necessary and sufficient to bind 5S rRNA in vitro. Suggesting that the entire family has a function in rRNA binding. Length = 119

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	188
CHL00139	109	rpl18 ribosomal protein L18; Validated	100.0
PRK05593	117	rplR 50S ribosomal protein L18; Reviewed	100.0
TIGR00060	114	L18_bact ribosomal protein L18, bacterial type. Th	100.0
COG0256	125	RplR Ribosomal protein L18 [Translation, ribosomal	100.0
PF00861	119	Ribosomal_L18p: Ribosomal L18p/L5e family; InterPr	100.0
PTZ00032	211	60S ribosomal protein L18; Provisional	100.0
cd00432	103	Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is	100.0
PRK08569	193	rpl18p 50S ribosomal protein L18P; Reviewed	99.97
KOG3333	188	consensus Mitochondrial/chloroplast ribosomal prot	99.77
PTZ00069	300	60S ribosomal protein L5; Provisional	99.57
PTZ00090	233	40S ribosomal protein S11; Provisional	97.87
TIGR03632	108	bact_S11 30S ribosomal protein S11. This model des	97.52
PF00411	110	Ribosomal_S11: Ribosomal protein S11; InterPro: IP	97.48
CHL00041	116	rps11 ribosomal protein S11	97.41
KOG0875	264	consensus 60S ribosomal protein L5 [Translation, r	97.38
PRK05309	128	30S ribosomal protein S11; Validated	97.17
TIGR03628	114	arch_S11P archaeal ribosomal protein S11P. This mo	96.7
PRK09607	132	rps11p 30S ribosomal protein S11P; Reviewed	96.54
PTZ00129	149	40S ribosomal protein S14; Provisional	96.07
KOG0408	190	consensus Mitochondrial/chloroplast ribosomal prot	94.37
COG0100	129	RpsK Ribosomal protein S11 [Translation, ribosomal	94.27
KOG0407	139	consensus 40S ribosomal protein S14 [Translation,	85.69

>CHL00139 rpl18 ribosomal protein L18; Validated

Probab=100.00  E-value=1.7e-39  Score=250.98  Aligned_cols=109  Identities=21%  Similarity=0.344  Sum_probs=105.9

Q ss_pred             chhhhcccccccCCCceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCC
Q 029747           74 KHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVY  153 (188)
Q Consensus        74 rh~r~rkr~~~~~~~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~  153 (188)
                      +|.|+|+++.++.++|||+|++||+|||||||||.+|+||+||||.||++++++++++|++||+.||++||+||+++||+
T Consensus         1 ~~~r~r~ki~g~~~rpRL~V~rSnkhiyaQvidd~~g~tlasaST~ek~~~~~~~~~~n~~aA~~vG~lla~ra~~~gi~   80 (109)
T CHL00139          1 KRERVRKKIKGTAERPRLSVFRSNKHIYAQIIDDTNGKTLVACSTLEPDVKSSLSSTSTCDASKLVGQKLAKKSLKKGIT   80 (109)
T ss_pred             CCeeeeeeecCCCCCCEEEEEEeCCeEEEEEEECCCCCEEEEEecCchhhhccccCCCCHHHHHHHHHHHHHHHHHCCCC
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCCchhhHHHHHHHHHHHCCcEe
Q 029747          154 TASYTPRERDKFEGKIRAVVQSLIDNGIDV  183 (188)
Q Consensus       154 ~vvfdDRgg~kyhGrVkA~adalRe~GL~f  183 (188)
                      +|+| |||+++|||||+||+|++||+||+|
T Consensus        81 ~vvf-Drgg~~yhGrV~a~a~~are~GL~f  109 (109)
T CHL00139         81 KVVF-DRGGKLYHGRIKALAEAAREAGLQF  109 (109)
T ss_pred             EEEE-cCCCCccchHHHHHHHHHHHhCCCC
Confidence            9999 7999999999999999999999987

>PRK05593 rplR 50S ribosomal protein L18; Reviewed

Probab=100.00  E-value=5.9e-39  Score=250.56  Aligned_cols=115  Identities=26%  Similarity=0.427  Sum_probs=108.6

Q ss_pred             hhhccccchhhhcccccccCCCceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 029747           67 KKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAER  146 (188)
Q Consensus        67 ~~~kr~~rh~r~rkr~~~~~~~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~R  146 (188)
                      +++.|.+||.|+|+++.++.++|||+|++||+|||||||||++++||+||||.||+++..+. ++|++||+.||++||+|
T Consensus         3 ~~~~r~~r~~r~r~ki~g~~~rpRL~V~~SnkhiyAQvidd~~~~tl~saST~e~~~k~~~~-~~n~~aa~~vG~~la~r   81 (117)
T PRK05593          3 KKEARLRRHRRVRKKISGTAERPRLSVFRSNRHIYAQVIDDVKGKTLASASTLEKDVRAGLK-GGNKEAAKKVGKLIAER   81 (117)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCCCEEEEEEeCCeEEEEEEECCCCEEEEEEecCcHhHhcccc-CCCHHHHHHHHHHHHHH
Confidence            34567788999999999999999999999999999999999999999999999999976554 89999999999999999


Q ss_pred             HHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEe
Q 029747          147 AREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDV  183 (188)
Q Consensus       147 akeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f  183 (188)
                      |+++||++|+| |||+++|||||+||+|++||+||+|
T Consensus        82 a~~~gi~~vvf-Drg~~~yhGrV~a~a~~are~Gl~f  117 (117)
T PRK05593         82 AKAKGIKQVVF-DRGGYKYHGRVKALADAAREAGLKF  117 (117)
T ss_pred             HHHCCCCEEEE-cCCCCcccHHHHHHHHHHHHhCCCC
Confidence            99999999999 7999999999999999999999987

>TIGR00060 L18_bact ribosomal protein L18, bacterial type

Probab=100.00  E-value=9.7e-39  Score=248.66  Aligned_cols=111  Identities=23%  Similarity=0.354  Sum_probs=105.4

Q ss_pred             hhccccchhhhcccccccC--CCceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHH
Q 029747           68 KSKNTTKHISFKQRTVAYM--EPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAE  145 (188)
Q Consensus        68 ~~kr~~rh~r~rkr~~~~~--~~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~  145 (188)
                      +++|.+||.|+|+++.++.  ++|||+|++||+|||||||||++++||+||||+|++++    +++|++||+.||++||+
T Consensus         2 ~~~r~~r~~r~r~ki~gt~~~~rpRL~V~rSnk~iyaQiIdd~~~~tlasaST~ek~~~----~~~n~~aA~~vG~~la~   77 (114)
T TIGR00060         2 KSARIRRHKRIRRKLRETGEANRPRLVVFRSNRHIYAQVIDDSKSEVLASASTLEKKLK----YTGNKDAAKKVGKLVAE   77 (114)
T ss_pred             cHHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCeEEEEEEECCCCEEEEEEecchhhhc----CCCCHHHHHHHHHHHHH
Confidence            3456688999999999998  89999999999999999999999999999999999976    68899999999999999


Q ss_pred             HHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEe
Q 029747          146 RAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDV  183 (188)
Q Consensus       146 RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f  183 (188)
                      ||+++||++|+| |||+++|||||+||+|++||+||+|
T Consensus        78 ra~~~gi~~vvf-Drgg~~YhGrv~A~a~~aRe~Gl~F  114 (114)
T TIGR00060        78 RLKEKGIKDVVF-DRGGYKYHGRVAALAEAAREAGLNF  114 (114)
T ss_pred             HHHHCCCCEEEE-eCCCCcchHHHHHHHHHHHHhCCCC
Confidence            999999999999 7999999999999999999999987

The archaeal and eukaryotic type rpL18 is not detectable under this model.

>COG0256 RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1e-35  Score=234.88  Aligned_cols=116  Identities=19%  Similarity=0.316  Sum_probs=109.9

Q ss_pred             hhhccccchhhhcccccccCCCceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhh--hhcCCCCHHHHHHHHHHHH
Q 029747           67 KKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKA--VLRSRSDIPACLAIGRILA  144 (188)
Q Consensus        67 ~~~kr~~rh~r~rkr~~~~~~~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~--~L~s~~n~~AA~~vG~lLA  144 (188)
                      ++.++.+||.++|.++.++.++|||+|++||+|||||||||..+.|+++|||.++++++  |...++|++||++||+++|
T Consensus         8 rr~~~~kr~~r~R~kl~g~~~rpRL~V~rSnkhi~aQiId~~~~~tla~aSt~~~~l~~~g~~~~~~N~~aA~~vG~lia   87 (125)
T COG0256           8 RRRRRGKRAYRIRKKLLGTSGRPRLVVRRSNRHIYAQIIDDVKGGTLASASTLSKELRKYGKKGGGGNTEAAYLVGKLIA   87 (125)
T ss_pred             HHHHHHhHHHHHHHhhccCCCCcEEEEEEeCCcEEEEEEEcCCCceEEEEEcchHHHHhhcccCCCCCHHHHHHHHHHHH
Confidence            66677888999999999999999999999999999999999999999999999999965  6667889999999999999


Q ss_pred             HHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEe
Q 029747          145 ERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDV  183 (188)
Q Consensus       145 ~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f  183 (188)
                      +||+++||++|+| ||++++|||||+|++|++||+||+|
T Consensus        88 ~ra~~kgi~~vVf-dr~g~~yhgRV~Ala~~AreaGL~f  125 (125)
T COG0256          88 ERALAKGIEEVVF-DRGGYKYHGRVAALADGAREAGLEF  125 (125)
T ss_pred             HHHHHcCCcEEEE-cCCCCCcchHHHHHHHHHHHcCcCC
Confidence            9999999999999 7999999999999999999999987

>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.6e-35  Score=230.61  Aligned_cols=116  Identities=23%  Similarity=0.387  Sum_probs=109.1

Q ss_pred             hhhccccchhhhcccccccCCCceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhh--hcCCCCHHHHHHHHHHHH
Q 029747           67 KKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAV--LRSRSDIPACLAIGRILA  144 (188)
Q Consensus        67 ~~~kr~~rh~r~rkr~~~~~~~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~--L~s~~n~~AA~~vG~lLA  144 (188)
                      ++.++.+|+.++++++.++.++|||+|++||+|||||||||.++.++++|||.|++++..  ..+++|++||+.||++||
T Consensus         2 k~~~~~~r~~~~r~~~~~~~~~~RL~V~~Snk~i~aQii~~~~~~~l~~aSt~~~~l~~~~~~~~~~n~~aa~~vG~lla   81 (119)
T PF00861_consen    2 KKRRRRRRKLRIRRKIKGTAERPRLVVFRSNKHIYAQIIDDSKGGTLASASTLSKELKKYGWKGSTKNVEAAYLVGELLA   81 (119)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTSSEEEEEEEESSEEEEEEEECTTTEEEEEEEEETTTGGGTT-SSTTSSHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhcCCCCCEEEEEeccCeEEEEEEeeCCCCeEEEEEecchhhhhhhhccCCCCEehHHHHHHHHH
Confidence            566777888999999999999999999999999999999999999999999999999964  477889999999999999


Q ss_pred             HHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEe
Q 029747          145 ERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDV  183 (188)
Q Consensus       145 ~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f  183 (188)
                      +||+++||..|+| |+++++|||+|+||+|++||+||+|
T Consensus        82 ~ra~~~gi~~v~f-dr~~~~y~grv~a~~~~~re~Gl~f  119 (119)
T PF00861_consen   82 KRALEKGIAKVVF-DRGGYKYHGRVKALADGAREGGLEF  119 (119)
T ss_dssp             HHHHHTTSSEEEE-CTSTSSSSSHHHHHHHHHHHTTCB-
T ss_pred             HHHHHcCCcEEEE-cCCCCcccHHHHHHHHHHHHcCCCC
Confidence            9999999999999 7999999999999999999999987

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....

>PTZ00032 60S ribosomal protein L18; Provisional

Probab=100.00  E-value=6.3e-34  Score=239.83  Aligned_cols=132  Identities=17%  Similarity=0.228  Sum_probs=110.8

Q ss_pred             ccccCCCCCCcccchhhhh-hccccchhhh----------------cccccccCCCceEEEEecCCeEEEEEEECCCCeE
Q 029747           50 EDFLDDDNSRPYTYKKEKK-SKNTTKHISF----------------KQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQ  112 (188)
Q Consensus        50 ~df~~~~~~~~~~y~~~~~-~kr~~rh~r~----------------rkr~~~~~~~pRL~V~kSNkhiyAqVidd~~g~t  112 (188)
                      -+|+.++ ++++++++.++ .+.+-+..-+                =+-|..-.++|||+|++||+|||||||||.+++|
T Consensus        51 ~~~~~k~-~~~~~~~~~r~l~~~~~~~~~~ee~~~~~~~~~~~~~~~~~i~~gkrrPRLsV~RSnkHIYAQIIDD~~~~T  129 (211)
T PTZ00032         51 KLLLTKR-SKLKGIPKPRKLHKHGFWAEIFEEKVEREELGNPCKDLDKDIIKGKRRPRLTLKNTNNQMYATIVDDYTRHV  129 (211)
T ss_pred             HHHHHHH-HhhcCCcchHHHHhhhhhhhhhhhhhhhcccCCCcccccHHHHcCCCcceEEEEecCCeEEEEEEECCCCCE
Confidence            3577777 88888887633 3333332222                2222333688999999999999999999999999


Q ss_pred             EEEEecchhhhhhhhc------------CCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCC
Q 029747          113 VAVAGTNSKDIKAVLR------------SRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNG  180 (188)
Q Consensus       113 VaSAST~Ek~ik~~L~------------s~~n~~AA~~vG~lLA~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~G  180 (188)
                      ||+|||+++++++.+.            .++|++||+.||++||+||+++||++|+| ||+||+|||||+||||++||+|
T Consensus       130 LasaSTlek~l~~~~~~~~~~~~n~~~~~g~nieaA~~VGk~IAerAl~kGI~kVvF-DRgGy~YHGRVkALAdaARe~G  208 (211)
T PTZ00032        130 LCFSCTNFKYLSHIFGTYPTKTTNRVRNNGGTIKAAYELGKLIGRKALSKGISKVRF-DRAHYKYAGKVEALAEGARAVG  208 (211)
T ss_pred             EEEecCCCHHHHhhhcccccccccccccCCCcHHHHHHHHHHHHHHHHHCCCCEEEE-eCCCCeehhHHHHHHHHHHHcC
Confidence            9999999999987665            57899999999999999999999999999 7999999999999999999999


Q ss_pred             cEe
Q 029747          181 IDV  183 (188)
Q Consensus       181 L~f  183 (188)
                      |+|
T Consensus       209 LkF  211 (211)
T PTZ00032        209 LQF  211 (211)
T ss_pred             CCC
Confidence            987

>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit

Probab=100.00  E-value=2.1e-33  Score=212.48  Aligned_cols=102  Identities=25%  Similarity=0.384  Sum_probs=97.7

Q ss_pred             cccccccCCCceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q 029747           79 KQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYT  158 (188)
Q Consensus        79 rkr~~~~~~~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfd  158 (188)
                      +++..+++.+|||+|++||+||||||+||.+++||++|||.||++++++++++|++||+.||++||+||+++||.+|+| 
T Consensus         2 ~~~~~~~~~~~RL~v~~Sn~~i~aqvi~~~~~~vl~sast~e~~~~~~~~~~~n~~aA~~vG~~la~r~~~~gi~~vv~-   80 (103)
T cd00432           2 RRKRLGTQERPRLVVRKSNKHIYAQIIDDSGDKTLVSASTLELAIKGVLGSGNNVEAAYLVGRLLAKRALEKGIKKVVF-   80 (103)
T ss_pred             ceEecCcCCCCEEEEEEeCCEEEEEEEEeCcCeEEEEEecCchhhcccccCCCcHHHHHHHHHHHHHHHHHCCCCEEEE-
Confidence            4555678899999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cCCCCchhhHHHHHHHHHHHCCc
Q 029747          159 PRERDKFEGKIRAVVQSLIDNGI  181 (188)
Q Consensus       159 DRgg~kyhGrVkA~adalRe~GL  181 (188)
                      |+++++|||||+||+|++||+||
T Consensus        81 D~~~~~~~grv~a~~~~~r~~Gl  103 (103)
T cd00432          81 DRGGYRYHGRVKALAKGAREGGL  103 (103)
T ss_pred             eCCCcccccHHHHHHHHHHHcCC
Confidence            79999999999999999999997

L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified.

>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed

Probab=99.97  E-value=5.9e-31  Score=220.70  Aligned_cols=109  Identities=17%  Similarity=0.178  Sum_probs=100.1

Q ss_pred             hhhcccccc-cCCCceEEEEecCCeEEEEEE--ECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCC
Q 029747           76 ISFKQRTVA-YMEPFTLDVFISKRFVSASLT--HRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADV  152 (188)
Q Consensus        76 ~r~rkr~~~-~~~~pRL~V~kSNkhiyAqVi--dd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI  152 (188)
                      +.+.+|... +..+|||+|++||+|||||||  |+++++||+||||.|++.++|..+++|++||+.||.+||+||+++||
T Consensus        19 TdY~~R~rl~~~~kpRLvV~rSNkhIyaQiI~~dd~gd~tLaSAsS~el~~~g~~~~~~N~~AAy~vG~llA~ral~kGi   98 (193)
T PRK08569         19 TDYRKRLKLLLSGKPRLVVRKTNKHVIAQIVKYDPKGDRTLASAHSRELAKYGWKGDTGNTPAAYLTGLLAGKKALKAGV   98 (193)
T ss_pred             ccHHHHHHHHhcCCCEEEEEEeCCeEEEEEEEccCCCCEEEEEEecCchhhccccCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence            444444433 468899999999999999999  89999999999999999999988999999999999999999999999


Q ss_pred             CEEEEecCCCCchh--hHHHHHHHHHHHCCcEeEe
Q 029747          153 YTASYTPRERDKFE--GKIRAVVQSLIDNGIDVKI  185 (188)
Q Consensus       153 ~~vvfdDRgg~kyh--GrVkA~adalRe~GL~f~~  185 (188)
                      ++|+| |+|+++||  |||+|+++++||+||+|+.
T Consensus        99 ~~vvf-DrGg~~yh~gGRV~A~akgArd~GL~fPh  132 (193)
T PRK08569         99 EEAVL-DIGLHRPTKGSRVFAALKGAIDAGLEIPH  132 (193)
T ss_pred             CEEEE-ecCCccccCCccHHHHHHHHHHcCCcCCC
Confidence            99999 79999999  9999999999999999974

>KOG3333 consensus Mitochondrial/chloroplast ribosomal protein L18 [Translation, ribosomal structure and biogenesis]

Probab=99.77  E-value=1.3e-18  Score=142.83  Aligned_cols=95  Identities=25%  Similarity=0.397  Sum_probs=85.5

Q ss_pred             ceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCchhhH
Q 029747           89 FTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGK  168 (188)
Q Consensus        89 pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdDRgg~kyhGr  168 (188)
                      ++|.|..+..|+.+-|.|..+| +|+||||.||+|+.+||++.|+.||.+||++||+||+++||+.+++.+.--..-...
T Consensus        61 h~lev~~~~~hveg~v~H~~~g-vvvSAST~EwaIk~qLYst~dtsA~~niGRVLAqRCLqsGI~fm~~~~t~ea~~~s~  139 (188)
T KOG3333|consen   61 HRLEVIRTQHHVEGLVEHQNGG-VVVSASTREWAIKKQLYSTRDTSACENIGRVLAQRCLQSGINFMVYQPTPEAAASSS  139 (188)
T ss_pred             eEEEEeecccceeeeeeEecCC-EEEEecccchHHHHHHhhccchHHHHHHHHHHHHHHHHhCcceeccCCChhhccchH
Confidence            5899999999999999997666 789999999999999999999999999999999999999999999943333445668


Q ss_pred             HHHHHHHHHHCCcEeE
Q 029747          169 IRAVVQSLIDNGIDVK  184 (188)
Q Consensus       169 VkA~adalRe~GL~f~  184 (188)
                      .+-|..++.|+|+.|+
T Consensus       140 ~q~l~~a~~e~Gv~lk  155 (188)
T KOG3333|consen  140 MQRLQSAMTEGGVVLK  155 (188)
T ss_pred             HHHHHHHHHhCCeeec
Confidence            8889999999999986

>PTZ00069 60S ribosomal protein L5; Provisional

Probab=99.57  E-value=5.8e-15  Score=130.76  Aligned_cols=98  Identities=17%  Similarity=0.183  Sum_probs=88.5

Q ss_pred             CCceEEEEecCCeEEEEEEE--CCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhc--------CCC---
Q 029747           87 EPFTLDVFISKRFVSASLTH--RVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA--------DVY---  153 (188)
Q Consensus        87 ~~pRL~V~kSNkhiyAqVid--d~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~Rakea--------GI~---  153 (188)
                      .+|||+|.+||++|.|||+.  -++++||++|+|.|+.-.+|..+.+|.+||+.+|.++|.|++++        |++   
T Consensus        47 pK~RlVVR~TN~~ii~Qiv~~~~~GD~vl~sA~S~eL~kyG~k~gl~N~~AAY~TGlL~arR~L~kl~ld~~y~G~~e~~  126 (300)
T PTZ00069         47 PKYRLVVRITNKDIICQIVYATIVGDKVLAAAYSHELPRFGIPVGLTNYAAAYATGLLLARRLLKKLGLDKQFEGVKEAD  126 (300)
T ss_pred             CCceEEEEEECCcEEEEEEEeecCCCEEEEEeehhhHhhcCcCCCCccHHHHHHHHHHHHHHHHHhhcccccccCccccc
Confidence            36999999999999999999  47889999999999998999999999999999999999999998        773   


Q ss_pred             -----------------EEEEecCCCCc--hhhHHHHHHHHHHHCCcEeEe
Q 029747          154 -----------------TASYTPRERDK--FEGKIRAVVQSLIDNGIDVKI  185 (188)
Q Consensus       154 -----------------~vvfdDRgg~k--yhGrVkA~adalRe~GL~f~~  185 (188)
                                       ++++ |.|..+  .++||+|+++|+.++||+++-
T Consensus       127 g~~y~v~e~~~~~~rpf~a~L-DiGL~rtt~G~RVFaalKGa~DgGl~IPh  176 (300)
T PTZ00069        127 GEYYHVDEEDDEERRPFKAIL-DVGLARTTTGNRVFGALKGAVDGGLHIPH  176 (300)
T ss_pred             CcccccccccccCCCCceEEE-eeccccCCCCceeeeehhcccccCcccCC
Confidence                             6788 688754  577999999999999999864

>PTZ00090 40S ribosomal protein S11; Provisional

Probab=97.87  E-value=0.00032  Score=60.82  Aligned_cols=101  Identities=17%  Similarity=0.246  Sum_probs=77.6

Q ss_pred             ccccCCCceEEEEecCCeEEEEEEECCCCe-EEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 029747           82 TVAYMEPFTLDVFISKRFVSASLTHRVTSK-QVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPR  160 (188)
Q Consensus        82 ~~~~~~~pRL~V~kSNkhiyAqVidd~~g~-tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdDR  160 (188)
                      |.--..++.|+|.-|-+++.++|.|..++. ||+-+|+-..-+|+.  ..+.-=||+.+++-+|+.|++.||..|..--+
T Consensus       112 i~~p~~~f~~vI~aSfNNTIVTlTD~~GNv~tl~WSSAG~~GFKGs--KKsTpfAAQ~aae~aakka~~~GIk~V~V~vK  189 (233)
T PTZ00090        112 IIEPTDRFMLVITTSKNNVHAQVVNKSKNYKTVFGSFAGNVGFRKK--LQQSERCAYRIGENIAKKCRRLGIFAVDIKFR  189 (233)
T ss_pred             EecCCCcEEEEEEeccCcEEEEEEeCCCCEEEEEEEcccccCcccC--ccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence            333457899999999999999999965553 577777666667653  23446688889999999999999998875223


Q ss_pred             CCCchhhHHHHHHHHHHHCCcEeEeecC
Q 029747          161 ERDKFEGKIRAVVQSLIDNGIDVKIYLD  188 (188)
Q Consensus       161 gg~kyhGrVkA~adalRe~GL~f~~~~~  188 (188)
                      |.    |...+++.++..+||++..-.|
T Consensus       190 Gp----GgREtALRaL~~~GLkIt~I~D  213 (233)
T PTZ00090        190 RI----MRVETVLQAFYANGLQVTQIIH  213 (233)
T ss_pred             CC----ChHHHHHHHHHHCCCEEEEEEE
Confidence            43    3499999999999999976554

>TIGR03632 bact_S11 30S ribosomal protein S11

Probab=97.52  E-value=0.0019  Score=49.79  Aligned_cols=90  Identities=14%  Similarity=0.167  Sum_probs=70.5

Q ss_pred             EEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCchhhHHH
Q 029747           91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKIR  170 (188)
Q Consensus        91 L~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdDRgg~kyhGrVk  170 (188)
                      +.|+-|.+.+.+.|.|. +|.+++.+|+-...+++.  .....-||..+++.++++|++.||..+..--+|. - -|+ +
T Consensus         3 ~hI~~s~NNT~itlTd~-~g~~~~~~S~G~~gfkg~--rk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~~kG~-G-~gr-~   76 (108)
T TIGR03632         3 AHIHATFNNTIVTITDP-QGNVLSWASAGAVGFKGS--KKSTPYAAQLAAEDAAKKAKEFGMKTVDVYVKGP-G-AGR-E   76 (108)
T ss_pred             EEEEccCCCEEEEEEcC-CCCEEEEEecCceeeCCC--ccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECC-C-CcH-H
Confidence            56888999999999996 566888888877777764  3556888999999999999999999877522443 2 244 6


Q ss_pred             HHHHHHHHCCcEeEee
Q 029747          171 AVVQSLIDNGIDVKIY  186 (188)
Q Consensus       171 A~adalRe~GL~f~~~  186 (188)
                      +++.+|...||++..-
T Consensus        77 ~~ir~l~~~glkI~~I   92 (108)
T TIGR03632        77 SAIRALQAAGLEVTSI   92 (108)
T ss_pred             HHHHHHHHCCCEEEEE
Confidence            7888899999988654

This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.

>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.48  E-value=0.002  Score=49.62  Aligned_cols=91  Identities=16%  Similarity=0.155  Sum_probs=72.0

Q ss_pred             EEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCchhhHHH
Q 029747           91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKIR  170 (188)
Q Consensus        91 L~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdDRgg~kyhGrVk  170 (188)
                      +.|+-|.+.+.++|.| ..|.++.+.|+-...+|+.  ......||..+++.++++|++.||+.|..--+|  .-.||- 
T Consensus         3 ihI~~s~NNt~vtlTd-~~G~~~~~~S~G~~gfK~~--rk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG--~g~gr~-   76 (110)
T PF00411_consen    3 IHIKSSFNNTIVTLTD-LKGNVLFWSSAGSLGFKGA--RKSTPYAAQQAAEKIAKKAKELGIKTVRVKIKG--FGPGRE-   76 (110)
T ss_dssp             EEEEEESSEEEEEEEE-TTSEEEEEEETTTSSTTTT--CGSSHHHHHHHHHHHHHHHHCTTEEEEEEEEES--SSTTHH-
T ss_pred             EEEEecCCCEEEEEEC-CCCCEEEEEeccccccccc--cccCHHHHHHHHHHHHHHHHHcCCeEEEEEEcC--CCccHH-
Confidence            6788999999999999 5688899999988888764  356789999999999999999999987752233  234454 


Q ss_pred             HHHHHHHHCCcEeEeec
Q 029747          171 AVVQSLIDNGIDVKIYL  187 (188)
Q Consensus       171 A~adalRe~GL~f~~~~  187 (188)
                      +++.+|...||++...-
T Consensus        77 ~~lk~l~~~gl~I~~I~   93 (110)
T PF00411_consen   77 AALKALKKSGLKIVSIT   93 (110)
T ss_dssp             HHHHHHHHTTSEEEEEE
T ss_pred             HHHHHHHhcCCEEEEEE
Confidence            55688899999886543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....

>CHL00041 rps11 ribosomal protein S11

Probab=97.41  E-value=0.003  Score=49.41  Aligned_cols=92  Identities=8%  Similarity=0.080  Sum_probs=72.8

Q ss_pred             eEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCchhhHH
Q 029747           90 TLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKI  169 (188)
Q Consensus        90 RL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdDRgg~kyhGrV  169 (188)
                      -+.|+-|.+.+.+.|.|. .|.+++.+|.-...+++.  .....-||..+++-++++|++.|+..+..--+|. - .|| 
T Consensus        15 i~hI~~t~NNTiiTlTd~-~G~~l~~~S~G~~gfKg~--rK~T~~Aa~~~a~~~~~~~~~~gi~~v~I~ikG~-G-~Gr-   88 (116)
T CHL00041         15 VIHIQASFNNTIVTVTDV-RGRVISWSSAGACGFKGA--RKGTPFAAQTAAENAIRTVIDQGMKRAEVMIKGP-G-LGR-   88 (116)
T ss_pred             EEEEEcccCCEEEEEEcC-CCCEEEEEecCceeeCCC--ccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECC-C-CcH-
Confidence            578899999999999995 577899998887777764  3455789999999999999999999877522442 2 466 


Q ss_pred             HHHHHHHHHCCcEeEeec
Q 029747          170 RAVVQSLIDNGIDVKIYL  187 (188)
Q Consensus       170 kA~adalRe~GL~f~~~~  187 (188)
                      ++++.+|...||++..--
T Consensus        89 ~~~ir~l~~~glkI~~I~  106 (116)
T CHL00041         89 DTALRAIRRSGLKLSSIR  106 (116)
T ss_pred             HHHHHHHHHCCCEEEEEE
Confidence            677899999999986543

>KOG0875 consensus 60S ribosomal protein L5 [Translation, ribosomal structure and biogenesis]

Probab=97.38  E-value=0.00012  Score=64.48  Aligned_cols=98  Identities=12%  Similarity=0.105  Sum_probs=78.6

Q ss_pred             CCCceEEEEecCCeEEEEEEEC--CCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHh-cCCCE--------
Q 029747           86 MEPFTLDVFISKRFVSASLTHR--VTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERARE-ADVYT--------  154 (188)
Q Consensus        86 ~~~pRL~V~kSNkhiyAqVidd--~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~Rake-aGI~~--------  154 (188)
                      ..++|+.|..+|+.|.+||+-.  +.+.++++|.+.|+.-.+......|-.||+.+|.+||.|+++ .|++.        
T Consensus        46 t~kyR~ivr~~n~~iicqi~~~~i~gd~v~~~a~s~elpkyg~~~GLtNyaAay~TglLLarR~l~~~gmD~~yeg~~e~  125 (264)
T KOG0875|consen   46 TPKYRMIVRVINKDIICQIAYATIEGDVIVRAAYAHELPKYGVKVGLTNYAAAYCTGLLLACRLLKRFGMDKIYEGQVEV  125 (264)
T ss_pred             CCceEEEEEEechhhHHHHHhheecceEEEEeeccccccccccccccchhHHHHhhHHHHHHHHHHHhCcccccccceee
Confidence            4679999999999999999873  567788999999999888777889999999999999999986 45332        


Q ss_pred             ------------------EEEecCCCCc--hhhHHHHHHHHHHHCCcEeE
Q 029747          155 ------------------ASYTPRERDK--FEGKIRAVVQSLIDNGIDVK  184 (188)
Q Consensus       155 ------------------vvfdDRgg~k--yhGrVkA~adalRe~GL~f~  184 (188)
                                        +.+ |-|..+  -..||+..++++.++||.++
T Consensus       126 ~gde~~~e~idgq~~aFt~~L-d~GLaRtttg~kvFGAlkga~dGGL~IP  174 (264)
T KOG0875|consen  126 TGDEYNVESIDGQPGAFTCYL-DAGLARTTTGNKVFGALKGAVDGGLSIP  174 (264)
T ss_pred             cCcccccccccCCCCCeEEEe-cccccccCCCceeeeeeehhcccceecC
Confidence                              122 333333  24489999999999999876

>PRK05309 30S ribosomal protein S11; Validated

Probab=97.17  E-value=0.0076  Score=47.97  Aligned_cols=93  Identities=15%  Similarity=0.164  Sum_probs=72.2

Q ss_pred             ceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCchhhH
Q 029747           89 FTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGK  168 (188)
Q Consensus        89 pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdDRgg~kyhGr  168 (188)
                      -.+.|+-|.+.+.+.|.|. .|.+++.+|.-...+++.  ..+..-||..+++.+++.|++.||..+.+--+|. - .|+
T Consensus        18 gi~hI~~t~NNTiitlTd~-~G~~~~~~S~G~~gfKg~--rK~T~~Aa~~aa~~~~~~~~~~gi~~v~v~ikG~-G-~Gr   92 (128)
T PRK05309         18 GVAHIHATFNNTIVTITDR-QGNVISWASAGGLGFKGS--RKSTPYAAQVAAEDAAKKAKEHGMKTVEVFVKGP-G-SGR   92 (128)
T ss_pred             eEEEEEccCCCEEEEEEcC-CCCEEEEEecCccEeCCC--ccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECC-C-CcH
Confidence            3688999999999999994 677888888776667653  3556779999999999999999999877522342 2 344


Q ss_pred             HHHHHHHHHHCCcEeEeec
Q 029747          169 IRAVVQSLIDNGIDVKIYL  187 (188)
Q Consensus       169 VkA~adalRe~GL~f~~~~  187 (188)
                       .+++.+|...||++..--
T Consensus        93 -~~air~L~~~glkI~~I~  110 (128)
T PRK05309         93 -ESAIRALQAAGLEVTSIK  110 (128)
T ss_pred             -HHHHHHHHHCCCEEEEEE
Confidence             677888888999886543

>TIGR03628 arch_S11P archaeal ribosomal protein S11P

Probab=96.70  E-value=0.03  Score=44.05  Aligned_cols=96  Identities=15%  Similarity=0.104  Sum_probs=68.2

Q ss_pred             EEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCC--CCc---h
Q 029747           91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRE--RDK---F  165 (188)
Q Consensus        91 L~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdDRg--g~k---y  165 (188)
                      +.|+-|-+.+...|.|..+..+++-+|.-..-.++.  ..+.--||...++-++++|++.||..|.+--+|  +.+   .
T Consensus         5 ~hI~as~NNTiitvTD~~G~~~~~~~S~G~~g~kg~--kk~TpyAAq~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~   82 (114)
T TIGR03628         5 AHIYSSFNNTIITITDITGAETIARSSGGMVVKADR--DESSPYAAMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKSP   82 (114)
T ss_pred             EEEEccCCCeEEEEEcCCCCEEEEEecCcceEeCCC--ccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCCC
Confidence            567888889999999965557787777776666542  233456888899999999999999998762234  222   1


Q ss_pred             hhHHHHHHHHHHHCCcEeEeecC
Q 029747          166 EGKIRAVVQSLIDNGIDVKIYLD  188 (188)
Q Consensus       166 hGrVkA~adalRe~GL~f~~~~~  188 (188)
                      .--=.+.+.+|...||++..--|
T Consensus        83 G~Gr~~air~l~~~glkI~~I~D  105 (114)
T TIGR03628        83 GPGAQAAIRALARAGLRIGRIED  105 (114)
T ss_pred             CCcHHHHHHHHHHCCCEEEEEEE
Confidence            11235677899999999876443

This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.

>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed

Probab=96.54  E-value=0.027  Score=45.38  Aligned_cols=96  Identities=14%  Similarity=0.091  Sum_probs=68.2

Q ss_pred             eEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCC--CCc---
Q 029747           90 TLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRE--RDK---  164 (188)
Q Consensus        90 RL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdDRg--g~k---  164 (188)
                      -+.|+-|-+.+...|.|..+..+++.+|.-..-.++.  ..+.-=||...++-++++|++.||+.|.+--+|  +..   
T Consensus        11 i~hI~as~NNTivtvTD~~G~~~~~~~S~G~~g~kg~--kK~TpyAAq~aae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~   88 (132)
T PRK09607         11 IAHIYASFNNTIITITDLTGAETIAKSSGGMVVKADR--DESSPYAAMQAAEKAAEDAKEKGITGVHIKVRAPGGNGQKS   88 (132)
T ss_pred             EEEEEcccCCeEEEEEcCCCCEEEEEecCcceeeCCC--ccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCcC
Confidence            5778899999999999965446887777766555531  233455888999999999999999998762234  111   


Q ss_pred             hhhHHHHHHHHHHHCCcEeEeec
Q 029747          165 FEGKIRAVVQSLIDNGIDVKIYL  187 (188)
Q Consensus       165 yhGrVkA~adalRe~GL~f~~~~  187 (188)
                      ..--=.+.+.+|...||++..--
T Consensus        89 ~G~Gr~~airal~~~glkI~~I~  111 (132)
T PRK09607         89 PGPGAQAAIRALARAGLRIGRIE  111 (132)
T ss_pred             CCCcHHHHHHHHHHCCCEEEEEE
Confidence            11123567789999999987643

>PTZ00129 40S ribosomal protein S14; Provisional

Probab=96.07  E-value=0.12  Score=42.57  Aligned_cols=97  Identities=18%  Similarity=0.159  Sum_probs=69.4

Q ss_pred             eEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecC--CCCchhh
Q 029747           90 TLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPR--ERDKFEG  167 (188)
Q Consensus        90 RL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdDR--gg~kyhG  167 (188)
                      -+.|+-|-+++..+|.|. .|.+++.+|+-...+|+.. ..+.--||...++.+|++|++.||..+..--|  |+..-+|
T Consensus        30 i~hI~as~NNTiItiTD~-~G~~~~w~SsG~~gfKg~r-~KsTpyAAq~aa~~~a~k~~~~Gi~~v~V~vr~~gg~~~kg  107 (149)
T PTZ00129         30 VAHIFASFNDTFIHVTDL-SGRETLVRVTGGMKVKADR-DESSPYAAMMAAQDVAARCKELGINALHIKLRATGGVRTKT  107 (149)
T ss_pred             EEEEEcccCCeEEEEEcc-cCCEEEEEecCcceecccc-cCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEecCCCCCCC
Confidence            577888989999999995 5666777777766666432 12334578888999999999999999876222  2222222


Q ss_pred             ---HHHHHHHHHHHCCcEeEeecC
Q 029747          168 ---KIRAVVQSLIDNGIDVKIYLD  188 (188)
Q Consensus       168 ---rVkA~adalRe~GL~f~~~~~  188 (188)
                         -=.+.+.+|..+||++..--|
T Consensus       108 ~GpGr~~airaL~~~glkI~~I~D  131 (149)
T PTZ00129        108 PGPGAQAALRALARAGLKIGRIED  131 (149)
T ss_pred             CCCCHHHHHHHHHHCCCEEEEEEe
Confidence               346778999999999876543

>KOG0408 consensus Mitochondrial/chloroplast ribosomal protein S11 [Translation, ribosomal structure and biogenesis]

Probab=94.37  E-value=0.58  Score=39.54  Aligned_cols=98  Identities=14%  Similarity=0.126  Sum_probs=72.7

Q ss_pred             cCCCceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCc
Q 029747           85 YMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDK  164 (188)
Q Consensus        85 ~~~~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdDRgg~k  164 (188)
                      +.+-|-..|.-|.++...+|.| ..|+++..+|-----+++.  ..+..-||...|--.+.|+++.|+..|-.--+|  .
T Consensus        76 f~eiPi~hIraS~NNTivtVtd-~kg~vi~~~ScgteGFrnt--rkgT~iAaQtaavaa~~r~v~~G~~~vrV~VkG--l  150 (190)
T KOG0408|consen   76 FREIPIIHIRASFNNTIVTVTD-VKGEVISWSSCGTEGFRNT--RKGTPIAAQTAAVAAIRRAVDQGMQTVRVRVKG--L  150 (190)
T ss_pred             ccccceEEEEecCCCeEEEEEc-cCCcEEEEeeccccccccc--ccCCchhHHHHHHHHHHHHHHhcceEEEEEEec--C
Confidence            5677889999999999999999 6777776666554455543  233455778888888999999999987762233  2


Q ss_pred             hhhHHHHHHHHHHHCCcEeEeecC
Q 029747          165 FEGKIRAVVQSLIDNGIDVKIYLD  188 (188)
Q Consensus       165 yhGrVkA~adalRe~GL~f~~~~~  188 (188)
                      =-||..| +.+|+-+||.+-+.-|
T Consensus       151 GpGRmsa-~kgl~m~Gl~vvsItD  173 (190)
T KOG0408|consen  151 GPGRMSA-LKGLRMGGLLVVSITD  173 (190)
T ss_pred             CccHHHH-HhhhhhcceEEEEeec
Confidence            4577765 5899999999876543

>COG0100 RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]

Probab=94.27  E-value=0.51  Score=38.03  Aligned_cols=91  Identities=14%  Similarity=0.117  Sum_probs=65.2

Q ss_pred             EEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCchhhHHH
Q 029747           91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKIR  170 (188)
Q Consensus        91 L~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdDRgg~kyhGrVk  170 (188)
                      ..|+.|-+.....+.| .+|.++..+|+=-.-+|+.-  .+.--||...++.+|+.++|.||..+..-=+|   ..--=.
T Consensus        21 ahI~asfNNTivtitD-~~Gn~i~wassG~~gfk~~r--k~tpyAA~~aa~~aa~~a~e~Gi~~v~v~vkg---pG~Gre   94 (129)
T COG0100          21 AHIHASFNNTIVTITD-LTGNVIIWASSGGMGFKGSR--KSTPYAAQLAAEDAAKKAKEHGIKSVEVKVKG---PGPGRE   94 (129)
T ss_pred             EEEEcccCCcEEEecC-CCCCEEEEEecCCceEcCCC--CCCHHHHHHHHHHHHHHHHHhCccEEEEEEEC---CCCcHH
Confidence            5677777777778777 67778999999888877542  44455666677999999999999987652233   111235


Q ss_pred             HHHHHHHHCCcEeEeec
Q 029747          171 AVVQSLIDNGIDVKIYL  187 (188)
Q Consensus       171 A~adalRe~GL~f~~~~  187 (188)
                      |++.+|..+||++..-.
T Consensus        95 aAiraL~~ag~~i~~I~  111 (129)
T COG0100          95 AAIRALAAAGLKITRIE  111 (129)
T ss_pred             HHHHHHHHccceEEEEE
Confidence            66777789999886543

>KOG0407 consensus 40S ribosomal protein S14 [Translation, ribosomal structure and biogenesis]

Probab=85.69  E-value=12  Score=29.99  Aligned_cols=93  Identities=14%  Similarity=0.122  Sum_probs=62.1

Q ss_pred             EEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEec--CCCCc---h
Q 029747           91 LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTP--RERDK---F  165 (188)
Q Consensus        91 L~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdD--Rgg~k---y  165 (188)
                      ..|+-|-+...++|.|-.+..|++-..--- ..|.. ..-++--||.+-....|.+|++.||+.+.+--  .|+-+   .
T Consensus        19 ahi~asfndtfvhitdlsg~eti~rvtggm-kvkad-rdesspyaamlaaqdva~kck~~gi~alh~klratgg~ktktp   96 (139)
T KOG0407|consen   19 AHIFASFNDTFVHVTDLSGKETIVRVTGGM-KVKAD-RDESSPYAAMLAAQDVAAKCKELGITALHIKLRATGGTKTKTP   96 (139)
T ss_pred             EEEEeecccceEEEeccCCceEEEEecCCe-EEecc-cccCChHHHHHHHHHHHHHHHhcCeeEEEEEEEecCCcccCCC
Confidence            456777777788888877778887664332 23322 22345667777789999999999999988732  24432   1


Q ss_pred             hhHHHHHHHHHHHCCcEeEe
Q 029747          166 EGKIRAVVQSLIDNGIDVKI  185 (188)
Q Consensus       166 hGrVkA~adalRe~GL~f~~  185 (188)
                      .---++.+.+|.-+|+.+..
T Consensus        97 gpgaqsalralar~gmrigr  116 (139)
T KOG0407|consen   97 GPGAQSALRALARSGMRIGR  116 (139)
T ss_pred             CccHHHHHHHHHHhcceeee
Confidence            22456777888888888754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	188
1vq8_N	187	50S ribosomal protein L18P; ribosome 50S, protein-	3e-05
3r8s_O	116	50S ribosomal protein L18; protein biosynthesis, R	4e-04

>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ... Length = 187

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 3/96 (3%)

Query: 91  LDVFISKRFVSASL--THRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAR 148
           L    S + V A L          +A A ++            ++P+    G +   RA+
Sbjct: 35  LVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQ 94

Query: 149 EADVYTAS-YTPRERDKFEGKIRAVVQSLIDNGIDV 183
           EA V  A             K+ A+ +  ID G+D+
Sbjct: 95  EAGVEEAVLDIGLNSPTPGSKVFAIQEGAIDAGLDI 130

>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O 2i2v_O ... Length = 116

 Score = 37.5 bits (88), Expect = 4e-04
 Identities = 18/62 (29%), Positives = 29/62 (46%)

Query: 91  LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
           L V  + R + A +     S+ +  A T  K I   L+   +  A  A+G+ +AERA E 
Sbjct: 25  LVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEK 84

Query: 151 DV 152
            +
Sbjct: 85  GI 86

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	188
3r8s_O	116	50S ribosomal protein L18; protein biosynthesis, R	100.0
3bbo_Q	161	Ribosomal protein L18; large ribosomal subunit, sp	100.0
1ovy_A	120	50S ribosomal protein L18; ribosome; NMR {Geobacil	100.0
3v2d_S	112	50S ribosomal protein L18; ribosome associated inh	100.0
2zjr_L	114	50S ribosomal protein L18; ribosome, large ribosom	100.0
1vq8_N	187	50S ribosomal protein L18P; ribosome 50S, protein-	99.97
3j21_O	203	50S ribosomal protein L18P; archaea, archaeal, KIN	99.97
2zkr_n	297	60S ribosomal protein L5; protein-RNA complex, 60S	99.93
3u5e_D	297	60S ribosomal protein L5; translation, ribosome, r	99.9
4a17_M	301	RPL5, 60S ribosomal protein L5; eukaryotic ribosom	99.89
3iz5_Q	304	60S ribosomal protein L5 (L18P); eukaryotic riboso	99.81
2vqe_K	129	30S ribosomal protein S11, 30S ribosomal protein S	97.35
3bbn_K	140	Ribosomal protein S11; small ribosomal subunit, sp	97.09
3r8n_K	117	30S ribosomal protein S11; protein biosynthesis, R	97.05
3j20_M	137	30S ribosomal protein S11P; archaea, archaeal, KIN	96.94
2xzm_K	151	RPS14E; ribosome, translation; 3.93A {Tetrahymena	96.66
3u5c_O	137	RP59A, 40S ribosomal protein S14-A; translation, r	95.7

>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...

Probab=100.00  E-value=3.5e-41  Score=261.62  Aligned_cols=115  Identities=23%  Similarity=0.320  Sum_probs=110.5

Q ss_pred             hhhccccchhhhcccccccCCCceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 029747           67 KKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAER  146 (188)
Q Consensus        67 ~~~kr~~rh~r~rkr~~~~~~~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~R  146 (188)
                      |+..|.+||.|+|+++.+ .++|||+|++||+|||||||||++|+||+||||.|+++++++.+++|++||+.||++||+|
T Consensus         2 ~~~~r~~r~~r~R~ki~~-~~rpRL~V~rSnkhIyAQiidd~~g~tlasAST~e~~~~~~~~~~~n~~AA~~vG~llA~R   80 (116)
T 3r8s_O            2 KKSARIRRATRARRKLQE-LGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAER   80 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TTCCEEEEEECSSCEEEEEECTTSSCEEEECCSSSHHHHTTCSCSSSHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhcc-CCCCEEEEEEeCCEEEEEEEEcCCCeEEEEEeeCchhhccccCCCCCHHHHHHHHHHHHHH
Confidence            355677899999999998 8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEe
Q 029747          147 AREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDV  183 (188)
Q Consensus       147 akeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f  183 (188)
                      |+++||++|+| |||+++|||||+||+|++||+||+|
T Consensus        81 al~~GI~~vvf-Drgg~~yhGrV~Ala~~are~Gl~f  116 (116)
T 3r8s_O           81 ALEKGIKDVSF-DRSGFQYHGRVQALADAAREAGLQF  116 (116)
T ss_dssp             HHTTTCCCCEE-ECTTSCSSSHHHHHHHHHHHTTCCC
T ss_pred             HHHCCCCEEEE-ecCCCcccHHHHHHHHHHHHhCCCC
Confidence            99999999999 7999999999999999999999987

>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=3.5e-41  Score=274.46  Aligned_cols=116  Identities=19%  Similarity=0.345  Sum_probs=111.0

Q ss_pred             hhhccccchhhhcccccccCCCceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhc--CCCCHHHHHHHHHHHH
Q 029747           67 KKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLR--SRSDIPACLAIGRILA  144 (188)
Q Consensus        67 ~~~kr~~rh~r~rkr~~~~~~~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~--s~~n~~AA~~vG~lLA  144 (188)
                      ++..|.+||.|+|+++.++.++|||+|++||+|||||||||.+|+||++|||+||++++.++  +++|++||+.||++||
T Consensus        44 k~~~R~rR~~RiR~ki~gt~~rPRL~V~rSnkhIyAQvIdd~~g~tLasASTlek~lk~~l~~g~~~n~~AA~~VG~liA  123 (161)
T 3bbo_Q           44 RREDRTARHVRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDSKMHTLASASTMQKSISEELDYSSSPTIEVAKKVGEVIA  123 (161)
T ss_dssp             CCCCGGGTSCCSCSGGGGSSSCCCCEEEECSSCEEEEEECCTTSCEEEEEEHHHHHHHHCCTTCCSSSHHHHHHHHHHSS
T ss_pred             hHHHHHHHHHHHHHhhccCCCCCEEEEEecCCeEEEEEEECCCCEEEEEEeCCcHHHHhhccccCCCCHHHHHHHHHHHH
Confidence            56678899999999999999999999999999999999999999999999999999997666  7899999999999999


Q ss_pred             HHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEe
Q 029747          145 ERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDV  183 (188)
Q Consensus       145 ~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f  183 (188)
                      +||+++||++|+| |||+|+|||||+||+|++||+||+|
T Consensus       124 eRA~e~GI~~VvF-DRgg~~YhGRVkAladaaRe~GL~F  161 (161)
T 3bbo_Q          124 SACLEKGITKVAF-DRGGYPYHGRVKALADAAREKGLQF  161 (161)
T ss_dssp             SHHHHTSSCCCCC-CCSSSCSSSTTHHHHHHHTTTTCCC
T ss_pred             HHHHHCCCCEEEE-eCCCCcchHHHHHHHHHHHHhCCcC
Confidence            9999999999999 7999999999999999999999987

>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1

Probab=100.00  E-value=6.6e-40  Score=255.96  Aligned_cols=114  Identities=21%  Similarity=0.386  Sum_probs=94.5

Q ss_pred             hhhccccchhhhcccccccCCCceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 029747           67 KKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAER  146 (188)
Q Consensus        67 ~~~kr~~rh~r~rkr~~~~~~~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~R  146 (188)
                      +++.|.+||.|+|+++.++.++|||+|++||+|||||||||++|+||+||||.||+++  +++++|++||+.||++||+|
T Consensus         7 ~~~~r~~r~~R~r~ki~gt~~rpRL~V~rSnkhIyAQiidd~~~~tl~sAsT~e~~~~--~~~~~n~~AA~~vG~llA~R   84 (120)
T 1ovy_A            7 RNAVRKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFG--LDSTNNIEAAKKVGELVAKR   84 (120)
T ss_dssp             -----------------CCSSCCSEEEEEETTEEEEEEECCSSCCCEEEESTTSTTTC--SSCTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEEEeCCeEEEEEEEcCCCEEEEEEecCchhhC--cCCCCcHHHHHHHHHHHHHH
Confidence            5677889999999999999999999999999999999999999999999999999987  67889999999999999999


Q ss_pred             HHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEe
Q 029747          147 AREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDV  183 (188)
Q Consensus       147 akeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f  183 (188)
                      |+++||++|+| |||+++|||||+||+|++||+||+|
T Consensus        85 al~~GI~~vvf-Drgg~~yhgrV~ala~~are~GL~f  120 (120)
T 1ovy_A           85 ALEKGIKQVVF-DRGGYLYHGRVKALADAAREAGLEF  120 (120)
T ss_dssp             HHHHSSSCCCC-CSTTCSSCSSTHHHHHHHHHHHCCC
T ss_pred             HHHCCCCEEEE-ecCCccccHHHHHHHHHHHHhCCcC
Confidence            99999999999 7999999999999999999999987

>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...

Probab=100.00  E-value=1.5e-39  Score=251.47  Aligned_cols=110  Identities=17%  Similarity=0.312  Sum_probs=104.8

Q ss_pred             hhhccccchhhhcccccccCCCceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 029747           67 KKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAER  146 (188)
Q Consensus        67 ~~~kr~~rh~r~rkr~~~~~~~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~R  146 (188)
                      +++.|.+||.|+|+++.++. +|||+|++||+|||||||||++|+||+||||.||+++     ++|++||+.||++||+|
T Consensus         3 ~~~~r~~r~~r~r~ki~gt~-rpRL~V~rSnkhiyAQiidd~~~~tlasAsT~e~~~k-----~~n~~AA~~vG~llA~r   76 (112)
T 3v2d_S            3 RLTAYERRKFRVRNRIKRTG-RLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLK-----GNKTEVARQVGRALAEK   76 (112)
T ss_dssp             CCCHHHHHHHHHHHHHHHTC-CCEEEEEECSSCEEEEEEETTTTEEEEEEETTTTTCC-----CCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCCC-CCEEEEEEeCCeEEEEEEecCCCeEEEEEEecchhcc-----CCCHHHHHHHHHHHHHH
Confidence            45667789999999999998 9999999999999999999999999999999999975     78999999999999999


Q ss_pred             HHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEe
Q 029747          147 AREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDV  183 (188)
Q Consensus       147 akeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f  183 (188)
                      |+++||++|+| |||+++|||||+||+|++||+||+|
T Consensus        77 a~~~GI~~vvf-Drgg~~yhGrV~Ala~~are~GL~f  112 (112)
T 3v2d_S           77 ALALGIKQVAF-DRGPYKYHGRVKALAEGAREGGLEF  112 (112)
T ss_dssp             HHTTTCCBCEE-ECTTSCSCSSTTHHHHHHHHTTCBC
T ss_pred             HHHCCCCEEEE-ecCCCcccHHHHHHHHHHHHcCCCC
Confidence            99999999999 7999999999999999999999987

>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P

Probab=100.00  E-value=5.9e-38  Score=243.14  Aligned_cols=109  Identities=17%  Similarity=0.367  Sum_probs=98.1

Q ss_pred             hhccccchhhhccccccc---CCCceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHH
Q 029747           68 KSKNTTKHISFKQRTVAY---MEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILA  144 (188)
Q Consensus        68 ~~kr~~rh~r~rkr~~~~---~~~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA  144 (188)
                      .++|.+||.|+|+++.++   .++|||+|++||+|||||||||++|+||+||||.|  +    .+++|++||+.||++||
T Consensus         3 ~~~r~~r~~r~r~ki~gt~~~~~rpRL~V~rSnkhIyAQiidd~~~~tl~sAST~e--l----~~~~n~~AA~~vG~llA   76 (114)
T 2zjr_L            3 TATTIRRKLRTRRKVRTTTAASGRLRLSVYRSSKHIYAQIIDDSRGQTLAAASSAA--L----KSGNKTDTAAAVGKALA   76 (114)
T ss_dssp             -----CHHHHHHHHHHSCSTTTCSEEECCCTTSSCCCCCEEETTTTEECCCCCSCS--C----CTTCSSSSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhhccccCCCCCCEEEEEEeCCeEEEEEEEcCCCEEEEEEEchH--h----cCCCCHHHHHHHHHHHH
Confidence            356788999999999999   99999999999999999999999999999999999  3    46889999999999999


Q ss_pred             HHHHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCcEe
Q 029747          145 ERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDV  183 (188)
Q Consensus       145 ~RakeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL~f  183 (188)
                      +||+++||++|+| |||+++|||||+||+|++||+||+|
T Consensus        77 ~Ral~~GI~~vvf-Drgg~~yhgrV~Ala~~are~GL~f  114 (114)
T 2zjr_L           77 AAAAEKGIKQVVF-DRGSYKYHGRVKALADAAREGGLDF  114 (114)
T ss_dssp             HHHHTTCCCCCEE-CCCSSCSCSHHHHHHHHHHHHC---
T ss_pred             HHHHHCCCCEEEE-ecCCccccHHHHHHHHHHHHhCCcC
Confidence            9999999999999 7999999999999999999999987

>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...

Probab=99.97  E-value=6.7e-32  Score=224.39  Aligned_cols=114  Identities=20%  Similarity=0.190  Sum_probs=99.3

Q ss_pred             hhhccccchhhhcccccccCCCceEEEEecCCeEEEEEE--ECCCCeEEEEEecchhhhhhhh-cCCCCHHHHHHHHHHH
Q 029747           67 KKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLT--HRVTSKQVAVAGTNSKDIKAVL-RSRSDIPACLAIGRIL  143 (188)
Q Consensus        67 ~~~kr~~rh~r~rkr~~~~~~~pRL~V~kSNkhiyAqVi--dd~~g~tVaSAST~Ek~ik~~L-~s~~n~~AA~~vG~lL  143 (188)
                      +++-++..|.|.|--   ..++|||+|++||+|||||||  ||++|+|||||||.||+ +..+ .+++|++||+.||++|
T Consensus        14 rregkTdy~~R~rl~---~~~rpRL~V~rSnkhIyAQII~~dd~~~~tlasAsT~e~~-k~~~k~~~~N~~AA~~vG~ll   89 (187)
T 1vq8_N           14 RREARTDYHQRLRLL---KSGKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLA-EYGWEAPTGNMPSAYLTGLLA   89 (187)
T ss_dssp             HHTTCCCHHHHHHHH---TTCSCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGG-GGTCCSCSSSHHHHHHHHHHH
T ss_pred             hhccchhHHHHHHHH---hcCCCEEEEEEeCCcEEEEEEEecCCCCEEEEEEEccchh-ccccccCCCcHHHHHHHHHHH
Confidence            344444444444322   368899999999999999999  99999999999999999 6444 6789999999999999


Q ss_pred             HHHHHhcCCCEEEEecCCCCchh--hHHHHHHHHHHHCCcEeEe
Q 029747          144 AERAREADVYTASYTPRERDKFE--GKIRAVVQSLIDNGIDVKI  185 (188)
Q Consensus       144 A~RakeaGI~~vvfdDRgg~kyh--GrVkA~adalRe~GL~f~~  185 (188)
                      |+||+++||++|+| |+|+++||  |||+|+++++||+||+|+.
T Consensus        90 A~Ral~kGI~~vvf-Drgg~~yh~GgRV~Ala~gAre~GL~fph  132 (187)
T 1vq8_N           90 GLRAQEAGVEEAVL-DIGLNSPTPGSKVFAIQEGAIDAGLDIPH  132 (187)
T ss_dssp             HHHHHHTTCCBCEE-ECTTSCCCTTCHHHHHHHHHHHTTCBCCC
T ss_pred             HHHHHHCCCCEEEE-cCCCceeccchHHHHHHHHhhcCCEeccC
Confidence            99999999999999 79999999  9999999999999999974

>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.97  E-value=9.8e-32  Score=225.75  Aligned_cols=116  Identities=16%  Similarity=0.101  Sum_probs=103.6

Q ss_pred             hhhhccccchhhhcccccccCCCceEEEEecCCeEEEEEEE--CCCCeEEEEEecchhhh-hhhhcCCCCHHHHHHHHHH
Q 029747           66 EKKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTH--RVTSKQVAVAGTNSKDI-KAVLRSRSDIPACLAIGRI  142 (188)
Q Consensus        66 ~~~~kr~~rh~r~rkr~~~~~~~pRL~V~kSNkhiyAqVid--d~~g~tVaSAST~Ek~i-k~~L~s~~n~~AA~~vG~l  142 (188)
                      .+++-+.++|.|.|-.+   ..+|||+|++||+||||||||  +++|+||+||||.||++ .+++.+++|++||+.||++
T Consensus        13 rRregkt~y~~R~rl~~---~~kpRL~V~rSnkhIyAQIId~d~~g~~tLasAST~El~lk~g~~~~~~N~~AA~~vG~l   89 (203)
T 3j21_O           13 RRREGKTNYRKRLKLLK---SGKPRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLL   89 (203)
T ss_dssp             HHHHTCCCHHHHHHHHT---TCCCEEEEEECSSCEEEEEEECCTTSCEEEEEECSTTTSSSSSCCSCTTSHHHHHHHHHH
T ss_pred             hHHHHhHHHHHHHHHHh---cCCCEEEEEEeCCeEEEEEEEecCCCCeEEEEEEccchhhhhcccCCCCcHHHHHHHHHH
Confidence            45566677777776554   468999999999999999998  78899999999999996 4666789999999999999


Q ss_pred             HHHHHHhcCCCEEEEecCCCCch--hhHHHHHHHHHHHCCcEeEe
Q 029747          143 LAERAREADVYTASYTPRERDKF--EGKIRAVVQSLIDNGIDVKI  185 (188)
Q Consensus       143 LA~RakeaGI~~vvfdDRgg~ky--hGrVkA~adalRe~GL~f~~  185 (188)
                      ||+||+++||++|+| |+|+++|  ||||+|+++++||+||+|+.
T Consensus        90 lA~Ral~kGI~~vvf-Drgg~~y~~hgRV~Ala~gAre~GL~iPh  133 (203)
T 3j21_O           90 IGYKAKQAGIEEAIL-DIGLHPPVRGSSVFAVLKGAVDAGLNVPH  133 (203)
T ss_dssp             SSSSTTSSCCCCCEE-ECCSSCCCTTSHHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHhCCCCEEEE-ecCcceeccCcchhhhhhhcccCCeeccc
Confidence            999999999999999 7999999  89999999999999999864

>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.93  E-value=2.3e-25  Score=195.37  Aligned_cols=98  Identities=13%  Similarity=0.158  Sum_probs=90.7

Q ss_pred             CCceEEEEecCCeEEEEEEECC--CCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhc--------------
Q 029747           87 EPFTLDVFISKRFVSASLTHRV--TSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA--------------  150 (188)
Q Consensus        87 ~~pRL~V~kSNkhiyAqVidd~--~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~Rakea--------------  150 (188)
                      .+|||+|++||+|||||||++.  +|+|||||||.|+.-.++..+++|.+||+.+|.+||+||+++              
T Consensus        47 ~kpRLvVrrSNk~I~aQII~~~~~gd~tLasAsS~El~kyg~k~g~tN~aAAy~tGlLlArRal~k~~ld~~y~G~~e~~  126 (297)
T 2zkr_n           47 PKYRMIVRVTNRDIICQIAYARIEGDMIVCARYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVT  126 (297)
T ss_dssp             CSEEEEEEEETTEEEEEEEECCSSSCEEEEEEEGGGGGGTCCCSCSSSHHHHHHHHHHHHHHHHCCCSCCCCCSSCCSSS
T ss_pred             CCceEEEEEecCcEEEEEEeccCCCCEEEEEeecCcccccccccCCCcHHHHHHHHHHHHHHHHHhhccchhhcCccccc
Confidence            5699999999999999999977  999999999999993344446899999999999999999999              


Q ss_pred             -------------CCCEEEEecCCCCch--hhHHHHHHHHHHHCCcEeEe
Q 029747          151 -------------DVYTASYTPRERDKF--EGKIRAVVQSLIDNGIDVKI  185 (188)
Q Consensus       151 -------------GI~~vvfdDRgg~ky--hGrVkA~adalRe~GL~f~~  185 (188)
                                   ||.+++| |+|+++|  ||||+|++++++|+||+|+-
T Consensus       127 g~~~~ve~~~~~~gi~~vvf-DrGl~ryttggRVfa~akGArDgGL~~Ph  175 (297)
T 2zkr_n          127 GDEYNVESIDGQPGAFTCYL-DAGLARTTTGNKVFGALKGAVDGGLSIPH  175 (297)
T ss_dssp             SCCCCCSSSCSSSCCCBEEE-ECTTSCCCTTCHHHHHHHHHHHTTCBCCC
T ss_pred             cccccccccccCCCceEEEE-ecCCcccCCCchHHHHHHHHHhcCcccCC
Confidence                         9999999 7999999  99999999999999999863

>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E

Probab=99.90  E-value=7.1e-24  Score=186.01  Aligned_cols=99  Identities=13%  Similarity=0.132  Sum_probs=91.5

Q ss_pred             CCCceEEEEecCCeEEEEEEEC--CCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhc--------CCCE-
Q 029747           86 MEPFTLDVFISKRFVSASLTHR--VTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA--------DVYT-  154 (188)
Q Consensus        86 ~~~pRL~V~kSNkhiyAqVidd--~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~Rakea--------GI~~-  154 (188)
                      ..+|||+|++||+|||||||++  ++|+|||||||.|++..++..+++|++||+.||.+||+||+++        |+++ 
T Consensus        46 t~kpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~k~g~k~~~~N~~AAy~vG~LiAeRAl~k~~ld~~y~G~~e~  125 (297)
T 3u5e_D           46 TPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQKLGLDETYKGVEEV  125 (297)
T ss_dssp             CCCCEEEEEEETTEEEEEEEECCTTCCEEEEEEEGGGGGGGTCCSCTTSHHHHHHHHHHHHHHHHHHTSTTSSCCCCSSC
T ss_pred             CCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEeecchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCcccccCcccc
Confidence            3689999999999999999998  6889999999999997776567889999999999999999999        9987 


Q ss_pred             ------------------EEEecCCCCch--hhHHHHHHHHHHHCCcEeEe
Q 029747          155 ------------------ASYTPRERDKF--EGKIRAVVQSLIDNGIDVKI  185 (188)
Q Consensus       155 ------------------vvfdDRgg~ky--hGrVkA~adalRe~GL~f~~  185 (188)
                                        ++| |+|+.++  |+||+|++++++|+||+++-
T Consensus       126 ~g~~~~ve~~~~~~~~f~~~L-DvGl~rtttG~RVfaalKGA~DgGL~IPh  175 (297)
T 3u5e_D          126 EGEYELTEAVEDGPRPFKVFL-DIGLQRTTTGARVFGALKGASDGGLYVPH  175 (297)
T ss_dssp             CCCCCCCCCCSSSCCCCBCEE-ECTTCCCCTTCSHHHHHHHHHHHTCBCCC
T ss_pred             ccceeccccccCCCCceeEEE-ecCCCccCccceehhhhhcccccCcccCC
Confidence                              899 7999998  99999999999999998763

>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M

Probab=99.89  E-value=1.9e-23  Score=183.54  Aligned_cols=99  Identities=15%  Similarity=0.133  Sum_probs=91.3

Q ss_pred             CCCceEEEEecCCeEEEEEEEC--CCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhc--------CCC--
Q 029747           86 MEPFTLDVFISKRFVSASLTHR--VTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA--------DVY--  153 (188)
Q Consensus        86 ~~~pRL~V~kSNkhiyAqVidd--~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~Rakea--------GI~--  153 (188)
                      ..+|||+|++||+|||||||++  ++|+|||||||.|++..++..+++|++||+.||.+||+||+++        |++  
T Consensus        46 spkpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~~~g~k~~~~N~~AAy~vG~LiAeRAl~k~~~d~~y~G~~e~  125 (301)
T 4a17_M           46 TPKYRLVARATNTRIIAQIVYATLKCDRVLCAADSYELKRFGVSTGLASYAAAYATGLLLARRLLKQIGLDTVYAGQTKV  125 (301)
T ss_dssp             CCCEEEEEEECSSCEEEEEEEECSSCEEEEEEEETTHHHHTTCCSCTTSHHHHHHHHHHHHHHHHHHHTCTTTCCCCSSC
T ss_pred             CCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEeeccchhccccCCCCcHHHHHHHHHHHHHHHHHhcCCcccccCcccc
Confidence            3579999999999999999998  5779999999999998777667899999999999999999999        998  


Q ss_pred             -----------------EEEEecCCCCch--hhHHHHHHHHHHHCCcEeEe
Q 029747          154 -----------------TASYTPRERDKF--EGKIRAVVQSLIDNGIDVKI  185 (188)
Q Consensus       154 -----------------~vvfdDRgg~ky--hGrVkA~adalRe~GL~f~~  185 (188)
                                       +++| |+|+.++  |+||+|++++++|+||+++-
T Consensus       126 ~g~~~~ve~~~~~~~~f~~~L-D~Gl~rtt~G~RVfaalKGA~DgGL~IPh  175 (301)
T 4a17_M          126 DGAYFNVDEDQKEKKPFKAIL-DAGLVRTTTGNRVFGVLKGACDGGINIPH  175 (301)
T ss_dssp             CCSCCCGGGTCCSSCCCBCEE-ECTTSCCCSSCHHHHHHHHHHHTTCBCCC
T ss_pred             ccceeecccccCCCCceEEEE-ecCCcccCcccchhhhhhcccccCcccCC
Confidence                             6899 7999998  99999999999999998753

>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...

Probab=97.35  E-value=0.0013  Score=51.35  Aligned_cols=95  Identities=13%  Similarity=0.073  Sum_probs=74.2

Q ss_pred             CCceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCchh
Q 029747           87 EPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFE  166 (188)
Q Consensus        87 ~~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdDRgg~kyh  166 (188)
                      ....+.|+-|.+++.++|.| .+|.++..+|+-...+|+.-  .+.--||..+++.+|++|+|.||..|..--+|.  =.
T Consensus        15 ~~gi~hI~as~NNTivtiTd-~~G~~~~~~SaG~~gfKg~r--k~tp~AA~~aa~~~~~~~~~~Gi~~v~V~vkG~--G~   89 (129)
T 2vqe_K           15 ASGRAYIHASYNNTIVTITD-PDGNPITWSSGGVIGYKGSR--KGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGT--GA   89 (129)
T ss_dssp             SEEEEEEEECSSCEEEEEEC-TTSCEEEECCTTTTTCCSGG--GGSHHHHHHHHHHHHHHHHTTTCCEEEEEEESC--CT
T ss_pred             cceEEEEEecCCCEEEEEEc-CCCCEEEEEeccceeEcCCC--cCCHHHHHHHHHHHHHHHHHhCCeEEEEEEECC--CC
Confidence            34789999999999999999 56778888888877777643  557889999999999999999999876522332  13


Q ss_pred             hHHHHHHHHHHHCCcEeEeec
Q 029747          167 GKIRAVVQSLIDNGIDVKIYL  187 (188)
Q Consensus       167 GrVkA~adalRe~GL~f~~~~  187 (188)
                      |+ ++++.+|...||++..--
T Consensus        90 Gr-e~airaL~~~Gl~I~~I~  109 (129)
T 2vqe_K           90 GR-EQAIRALQASGLQVKSIV  109 (129)
T ss_dssp             TH-HHHHHHHHTSSSEEEECE
T ss_pred             CH-HHHHHHHHHCCCEEEEEE
Confidence            45 477899999999876543

>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=97.09  E-value=0.0012  Score=52.40  Aligned_cols=95  Identities=15%  Similarity=0.078  Sum_probs=74.2

Q ss_pred             CCceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCchh
Q 029747           87 EPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFE  166 (188)
Q Consensus        87 ~~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdDRgg~kyh  166 (188)
                      ....+.|+-|.+++.++|.| .+|.+++.+|+-...+|+.  ..+.--||..+++.++++|+|.||..|..--+|.  =.
T Consensus        28 ~~gi~hI~as~NNTivtiTD-~~G~~i~~~SaG~~GfKg~--rksTp~AA~~aa~~~~~~a~e~Gi~~v~V~vkG~--G~  102 (140)
T 3bbn_K           28 PKGVIHVQASFNNTIVTVTD-VRGRVVSWASAGTCGFRGT--KRGTPFAAQTAAGNAIRTVVEQGMQRAEVMIKGP--GL  102 (140)
T ss_dssp             CCCEEEEEECSSCEEEEEEC-SSSCEEEEEETTTSSCCTT--SCSSHHHHHHHHTSGGGTSTTTCCCEEEEEEESC--ST
T ss_pred             eeeEEEEEecCCCEEEEEEc-CCCCEEEEEeccceeEccc--ccCCHHHHHHHHHHHHHHHHHhCCeEEEEEEECC--CC
Confidence            45789999999999999999 5677888888887777764  3567889999999999999999999876421332  12


Q ss_pred             hHHHHHHHHHHHCCcEeEeec
Q 029747          167 GKIRAVVQSLIDNGIDVKIYL  187 (188)
Q Consensus       167 GrVkA~adalRe~GL~f~~~~  187 (188)
                      |+ ++++.+|...||++..--
T Consensus       103 GR-eaairaL~~~Gl~I~~I~  122 (140)
T 3bbn_K          103 GR-DAALRAIRRSGILLSFVR  122 (140)
T ss_dssp             TS-SHHHHHHHTTTCEEEEEE
T ss_pred             cH-HHHHHHHHHCCCEEEEEE
Confidence            33 367888888999886543

>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=96.94  E-value=0.008  Score=47.45  Aligned_cols=96  Identities=15%  Similarity=0.065  Sum_probs=69.7

Q ss_pred             CceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCC--CCc-
Q 029747           88 PFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRE--RDK-  164 (188)
Q Consensus        88 ~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdDRg--g~k-  164 (188)
                      ...+.|+-|-+.+.++|.|..+..+++.+|.-..-+++.  ..+.--||...++.+|++|++.||+.|..--+|  +.+ 
T Consensus        14 ~gi~hI~asfNNTivtiTD~~G~~~i~~~S~G~~gfkg~--~ksTp~AA~~aa~~~~~~a~e~Gi~~v~V~vkG~gg~~~   91 (137)
T 3j20_M           14 WGIAHIYSSFNNTIIHITDITGAETISRWSGGMVVKADR--DEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKS   91 (137)
T ss_dssp             EEEEEEEECSSCEEEEEEESSSCSEEEEEEGGGTCSCTT--TSSSHHHHHHHHHHHHHHHHHHTEEEEEEEEECCCSSSC
T ss_pred             ceEEEEEcCCCCEEEEEEcCCCCEEEEEEccceeeecCC--ccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCCCC
Confidence            346789999999999999965446888887776665542  345677889999999999999999987652233  222 


Q ss_pred             ---hhhHHHHHHHHHHHCCcEeEee
Q 029747          165 ---FEGKIRAVVQSLIDNGIDVKIY  186 (188)
Q Consensus       165 ---yhGrVkA~adalRe~GL~f~~~  186 (188)
                         =.|+ ++++.+|...||++..-
T Consensus        92 ~~pG~Gr-esairaL~~~Gl~I~~I  115 (137)
T 3j20_M           92 KTPGPGA-QAAIRALARAGLKIGRV  115 (137)
T ss_dssp             CSCCTHH-HHHHHHHHHHTCEEEEE
T ss_pred             cCCCCcH-HHHHHHHHhCCCEEEEE
Confidence               1344 55677888889988654

>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*

Probab=96.66  E-value=0.0071  Score=48.51  Aligned_cols=98  Identities=13%  Similarity=0.067  Sum_probs=68.1

Q ss_pred             CCceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecC--CCCc
Q 029747           87 EPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPR--ERDK  164 (188)
Q Consensus        87 ~~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdDR--gg~k  164 (188)
                      ....+.|+-|-+++.++|.|..+..++.. ||--...++. ...+.--||...++.+|++|++.||+.|..--+  ||.+
T Consensus        27 ~~gi~hI~asfNNTiVtiTD~~G~~~~~~-ssgg~~~k~~-r~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~vkG~gg~~  104 (151)
T 2xzm_K           27 VFGVCHIMATWNDTFIHVTDLSGRETLVR-VTGGMKVKAD-REESSPYAAMQAAIDVVNRCKELKINALHIKLRAKGGVE  104 (151)
T ss_dssp             CEEEEEEEBCSSCBCCEEECTTCCSEEEE-CCHHHHCSSG-GGGSCHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCTTS
T ss_pred             eeeEEEEEccCCCEEEEEECCCCCEEEEE-ecCcceEeCC-CCcCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEcCCCCC
Confidence            44678999999999999999655545544 4433333322 224567788899999999999999998765213  2222


Q ss_pred             ----hhhHHHHHHHHHHHCCcEeEeec
Q 029747          165 ----FEGKIRAVVQSLIDNGIDVKIYL  187 (188)
Q Consensus       165 ----yhGrVkA~adalRe~GL~f~~~~  187 (188)
                          -.| -++++.+|..+||++..--
T Consensus       105 ~kgpG~G-resairaL~~~GlkI~~I~  130 (151)
T 2xzm_K          105 TKQPGPG-AQSALRALARSGMKIGRIE  130 (151)
T ss_dssp             CCSCCSH-HHHHHHHHHHTSCEEEEEE
T ss_pred             ccCCCcc-HHHHHHHHHHCCCEEEEEE
Confidence                134 4788889999999986543

>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*

Probab=95.70  E-value=0.021  Score=45.00  Aligned_cols=96  Identities=16%  Similarity=0.131  Sum_probs=66.7

Q ss_pred             CCceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEec--CCCCc
Q 029747           87 EPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTP--RERDK  164 (188)
Q Consensus        87 ~~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdD--Rgg~k  164 (188)
                      ....+.|+-|.+.+..+|.|. +|.++...|+-...+|+. ...+.--||...++.+|++|+|.||+.+..--  .|+.+
T Consensus        13 ~~gi~hI~asfNNTivtvTD~-~G~~~~~~ssG~~gfKg~-r~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~vra~gg~~   90 (137)
T 3u5c_O           13 VFGVARIYASFNDTFVHVTDL-SGKETIARVTGGMKVKAD-RDESSPYAAMLAAQDVAAKCKEVGITAVHVKIRATGGTR   90 (137)
T ss_dssp             CEEECCEEEETTEEEECCEET-TSSSCCCCCBTTTTSCCS-TTTTCHHHHHHHHHHHHHHHHHHTCCEEECEEECSCTTS
T ss_pred             eeEEEEEEccCCCEEEEEEcC-CCCEEEEEeCCCcEEeCC-cccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeccCCCc
Confidence            334567899999999999995 555565666655566642 11356678888999999999999999876421  23332


Q ss_pred             h----hhHHHHHHHHHHHCCcEeEe
Q 029747          165 F----EGKIRAVVQSLIDNGIDVKI  185 (188)
Q Consensus       165 y----hGrVkA~adalRe~GL~f~~  185 (188)
                      .    .| -++++.+|...||++..
T Consensus        91 ~kgpG~G-r~sairaL~~~Gl~I~~  114 (137)
T 3u5c_O           91 TKTPGPG-GQAALRALARSGLRIGR  114 (137)
T ss_dssp             CCSCCGG-GHHHHHHHHTTTCEECC
T ss_pred             ccCCCcc-hHHHHHHHHhCCCEEEE
Confidence            2    23 45667888888998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	188
d1ovya_	97	c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacill	8e-10
d1vqon1	186	c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {A	4e-09
d2gycm1	113	c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {E	1e-08

>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus stearothermophilus [TaxId: 1422]} Length = 97

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 51.4 bits (123), Expect = 8e-10
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 91  LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
           L VF S + + A +     S  +  A T  K+    L S ++I A   +G ++A+RA E 
Sbjct: 8   LSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFG--LDSTNNIEAAKKVGELVAKRALEK 65

Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
            +    +  R    + G+++A+  +  + G++
Sbjct: 66  GIKQVVFD-RGGYLYHGRVKALADAAREAGLE 96

>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 51.5 bits (123), Expect = 4e-09
 Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 3/124 (2%)

Query: 63  YKKEKKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSK- 121
           YK   + +   +    ++  +       L    S + V A L     +    +A  +S  
Sbjct: 6   YKVPMRRRREARTDYHQRLRLLKSGKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSD 65

Query: 122 -DIKAVLRSRSDIPACLAIGRILAERAREADV-YTASYTPRERDKFEGKIRAVVQSLIDN 179
                      ++P+    G +   RA+EA V                K+ A+ +  ID 
Sbjct: 66  LAEYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLDIGLNSPTPGSKVFAIQEGAIDA 125

Query: 180 GIDV 183
           G+D+
Sbjct: 126 GLDI 129

>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Escherichia coli [TaxId: 562]

 Score = 48.8 bits (116), Expect = 1e-08
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 91  LDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREA 150
           L V  + R + A +     S+ +  A T  K I   L+   +  A  A+G+ +AERA E 
Sbjct: 24  LVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEK 83

Query: 151 DVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
            +   S+  R   ++ G+++A+  +  + G+
Sbjct: 84  GIKDVSFD-RSGFQYHGRVQALADAAREAGL 113

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	188
d2gycm1	113	Ribosomal protein L18 (L18p) {Escherichia coli [Ta	100.0
d1ovya_	97	Ribosomal protein L18 (L18p) {Bacillus stearotherm	100.0
d2zjrl1	104	Ribosomal protein L18 (L18p) {Deinococcus radiodur	99.97
d2j01s1	86	Ribosomal protein L18 (L18p) {Thermus thermophilus	99.97
d1vqon1	186	Ribosomal protein L18 (L18p) {Archaeon Haloarcula	99.96
d2uubk1	119	Ribosomal protein S11 {Thermus thermophilus [TaxId	97.31
d2qalk1	117	Ribosomal protein S11 {Escherichia coli [TaxId: 56	97.09

>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.9e-40  Score=250.71  Aligned_cols=113  Identities=23%  Similarity=0.306  Sum_probs=108.0

Q ss_pred             hhhccccchhhhcccccccCCCceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 029747           67 KKSKNTTKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAER  146 (188)
Q Consensus        67 ~~~kr~~rh~r~rkr~~~~~~~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~R  146 (188)
                      |++.|.+||.++|+++.++. +|||+|++||+|||||||||.+++||++|||+|++++.+++.++|++||+.||++||++
T Consensus         1 k~~~r~rR~~R~R~ki~~~~-~pRL~V~rSnkhiyaQiIdd~~~~tl~saST~~k~~~~~~~~~~n~~aA~~vG~~la~r   79 (113)
T d2gycm1           1 KKSARIRRATRARRKLQELG-ATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAER   79 (113)
T ss_dssp             CCCCHHHHTTCSCSTTTTTT-CCCCBEEECSSCEEEEEEETTTTEEEEEEETTGGGGTSCCSCSSSHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHhccCC-CCeEEEEEeCCcEEEEEEEccCCcEEEEeeehhhhhhhhcCCCcchHHHHHHHHHHHHH
Confidence            46778899999999998776 59999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCEEEEecCCCCchhhHHHHHHHHHHHCCc
Q 029747          147 AREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI  181 (188)
Q Consensus       147 akeaGI~~vvfdDRgg~kyhGrVkA~adalRe~GL  181 (188)
                      |+++||++|+| ||++|+|||||+||+|++||+||
T Consensus        80 a~~~gI~~vvf-DR~g~~YhGrVka~ad~aRe~Gl  113 (113)
T d2gycm1          80 ALEKGIKDVSF-DRSGFQYHGRVQALADAAREAGL  113 (113)
T ss_dssp             HHHHTCCCCCC-BCCSCCSSSHHHHHHHHHHHHTC
T ss_pred             HHHCCCCEEEE-CCCCCccchHHHHHHHHHHHcCC
Confidence            99999999999 79999999999999999999997

>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=3.7e-36  Score=225.02  Aligned_cols=97  Identities=23%  Similarity=0.372  Sum_probs=92.2

Q ss_pred             ccCCCceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCCC
Q 029747           84 AYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERD  163 (188)
Q Consensus        84 ~~~~~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdDRgg~  163 (188)
                      |+.++|||+|++||+|||||||||.+++||+++||++++++.  ...+|++||+.||++||++|+++||++|+| ||+++
T Consensus         1 gt~~rpRL~V~kSnkhiyaQlIdd~~~~tl~s~St~~k~~~~--~~~~n~~aA~~vG~~~a~kak~~gi~~vvf-Dr~g~   77 (97)
T d1ovya_           1 GTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFGL--DSTNNIEAAKKVGELVAKRALEKGIKQVVF-DRGGY   77 (97)
T ss_dssp             CCSSCCSEEEEEETTEEEEEEECCSSCCCEEEESTTSTTTCS--SCTTSHHHHHHHHHHHHHHHHHHSSSCCCC-CSTTC
T ss_pred             CCCCCCEEEEEEeCCeEEEEEEEcCCCeEEEEecchhhhhcc--cccCcHHHHHHHHHHHHHHHHHcCCCEEEE-cCCCC
Confidence            578999999999999999999999999999999999999864  346799999999999999999999999999 79999


Q ss_pred             chhhHHHHHHHHHHHCCcEe
Q 029747          164 KFEGKIRAVVQSLIDNGIDV  183 (188)
Q Consensus       164 kyhGrVkA~adalRe~GL~f  183 (188)
                      +|||||+||+|++||+||+|
T Consensus        78 ~yhGrvka~a~~~R~~Gl~F   97 (97)
T d1ovya_          78 LYHGRVKALADAAREAGLEF   97 (97)
T ss_dssp             SSCSSTHHHHHHHHHHHCCC
T ss_pred             cchHHHHHHHHHHHHhCCCC
Confidence            99999999999999999987

>d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p) {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.97  E-value=1.2e-33  Score=213.84  Aligned_cols=90  Identities=20%  Similarity=0.345  Sum_probs=84.2

Q ss_pred             ccCCCceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCCC
Q 029747           84 AYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERD  163 (188)
Q Consensus        84 ~~~~~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdDRgg~  163 (188)
                      +..++|||+|++||+|||||||||++++||+|+||.+++.      .+++++|..||++||++++++||++|+| ||+||
T Consensus        15 ~~~~rpRL~V~rSnkhiyaQiIDd~~~~tl~s~St~~~~~------~~~~~~a~~vG~~ia~~a~~kgi~~v~F-DR~g~   87 (104)
T d2zjrl1          15 AASGRLRLSVYRSSKHIYAQIIDDSRGQTLAAASSAALKS------GNKTDTAAAVGKALAAAAAEKGIKQVVF-DRGSY   87 (104)
T ss_dssp             TTTCSEEECCCTTSSCCCCCEEETTTTEECCCCCSCSCCT------TCSSSSHHHHHHHHHHHHHTTCCCCCEE-CCCSS
T ss_pred             ccCCCcEEEEEEccCeeEEEEEecCCCeEEEeeccccccc------cchhhHHHHHHHHHHHHHHHCCCCEEEE-CCCCC
Confidence            3467899999999999999999999999999999997653      4688999999999999999999999999 79999


Q ss_pred             chhhHHHHHHHHHHHCC
Q 029747          164 KFEGKIRAVVQSLIDNG  180 (188)
Q Consensus       164 kyhGrVkA~adalRe~G  180 (188)
                      +|||+|+||||++||+|
T Consensus        88 ~YHGrvka~ad~~R~~G  104 (104)
T d2zjrl1          88 KYHGRVKALADAAREGG  104 (104)
T ss_dssp             CSCSHHHHHHHHHHHHC
T ss_pred             cchhHHHHHHHHHHhCC
Confidence            99999999999999998

>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=1.6e-33  Score=207.02  Aligned_cols=86  Identities=20%  Similarity=0.336  Sum_probs=82.4

Q ss_pred             CceEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCchhh
Q 029747           88 PFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEG  167 (188)
Q Consensus        88 ~pRL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdDRgg~kyhG  167 (188)
                      +|||+|++||+|||||||||.+++||+|+||.+++++     ..|+++|..||++||++|+++||++|+| ||+|++|||
T Consensus         1 R~RL~V~rSnk~iyaQiIDd~~~~tl~s~St~~k~~k-----~~~~~~A~~vG~~la~~ak~~gI~~v~F-DR~g~~YHG   74 (86)
T d2j01s1           1 RLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLK-----GNKTEVARQVGRALAEKALALGIKQVAF-DRGPYKYHG   74 (86)
T ss_dssp             SCEEECCBCSSCBCEEEEETTTTEEEEEECSTTTCCC-----SCHHHHHHHHHHHHHHHHHHTSCCCCBC-CCSTTCSSS
T ss_pred             CcEEEEEEcCCeEEEEEEEcCCCeEEEEEeccchhhc-----CCCHHHHHHHHHHHHHHHHHCCCCEEEE-eCCCCcccc
Confidence            6999999999999999999999999999999999876     3689999999999999999999999999 799999999


Q ss_pred             HHHHHHHHHHHC
Q 029747          168 KIRAVVQSLIDN  179 (188)
Q Consensus       168 rVkA~adalRe~  179 (188)
                      ||+||||+|||+
T Consensus        75 rvka~Ad~~Reg   86 (86)
T d2j01s1          75 RVKALAEGAREG   86 (86)
T ss_dssp             SCCCCSSCTTCC
T ss_pred             HHHHHHHHHhCC
Confidence            999999999985

>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.96  E-value=6.3e-30  Score=210.40  Aligned_cols=99  Identities=21%  Similarity=0.168  Sum_probs=93.9

Q ss_pred             CCCceEEEEecCCeEEEEEE--ECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCC--
Q 029747           86 MEPFTLDVFISKRFVSASLT--HRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRE--  161 (188)
Q Consensus        86 ~~~pRL~V~kSNkhiyAqVi--dd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdDRg--  161 (188)
                      ..+|||+|++||+|||||||  |+.+++||+||||.|+..++|..+++|++||+.+|.+||+||+++||++++| |+|  
T Consensus        29 s~kpRLvVrrSNk~IyaQII~~d~~gd~vlaSAsS~el~k~g~k~~~~N~~AAy~~G~liA~ra~~~gi~~vvf-D~G~~  107 (186)
T d1vqon1          29 SGKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVL-DIGLN  107 (186)
T ss_dssp             TCSCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGGGGSCCSCSSSHHHHHHHHHHHHHHHHHTTCCBCEE-ECTTS
T ss_pred             CCCCeEEEEEeCCceEEEEEEecCCCCEEEEEEecchhhhhccccCccHHHHHHHhHHHHHHHHHhhcccceEE-eeCCC
Confidence            46899999999999999999  5778999999999999999999999999999999999999999999999999 777  


Q ss_pred             CCchhhHHHHHHHHHHHCCcEeEe
Q 029747          162 RDKFEGKIRAVVQSLIDNGIDVKI  185 (188)
Q Consensus       162 g~kyhGrVkA~adalRe~GL~f~~  185 (188)
                      ++.|||||+|+++++||+||+++.
T Consensus       108 ~~~yhgRV~A~akgard~GL~Iph  131 (186)
T d1vqon1         108 SPTPGSKVFAIQEGAIDAGLDIPH  131 (186)
T ss_dssp             CCCTTCHHHHHHHHHHHTTCBCCC
T ss_pred             CCCccchHHHHHHHHHhcCccCCC
Confidence            899999999999999999999864

>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein S11
species: Thermus thermophilus [TaxId: 274]

Probab=97.31  E-value=0.00093  Score=49.45  Aligned_cols=92  Identities=13%  Similarity=0.103  Sum_probs=70.9

Q ss_pred             eEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCchhhHH
Q 029747           90 TLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKI  169 (188)
Q Consensus        90 RL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdDRgg~kyhGrV  169 (188)
                      .+.|+-|.+++.++|.|. +|.++..+|+-...+++.  ....-.||..+++.+++++++.||..|..--+|.  -.|| 
T Consensus         8 ivhI~~t~NNT~itlTD~-~Gn~i~~~S~G~~gfkg~--rk~t~~Aa~~~a~~~~~k~~~~g~~~v~v~~kG~--G~gR-   81 (119)
T d2uubk1           8 RAYIHASYNNTIVTITDP-DGNPITWSSGGVIGYKGS--RKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGT--GAGR-   81 (119)
T ss_dssp             EEEEEECSSCEEEEEECT-TSCEEEEEETTTSSCCSG--GGGSHHHHHHHHHHHHHHHHTTTCCEEEEEEECC--CTTH-
T ss_pred             EEEEEeccCCEEEEEECC-CCCEEEEEecccceeccc--cccchhHHHHHHHHHHHHHHHcCCcEEEEEEEcC--CCCh-
Confidence            578999999999999995 567888888877667653  2456789999999999999999999876422342  2355 


Q ss_pred             HHHHHHHHHCCcEeEeec
Q 029747          170 RAVVQSLIDNGIDVKIYL  187 (188)
Q Consensus       170 kA~adalRe~GL~f~~~~  187 (188)
                      .+++.+|...||++..-.
T Consensus        82 ~~~ik~l~~~g~kI~~I~   99 (119)
T d2uubk1          82 EQAIRALQASGLQVKSIV   99 (119)
T ss_dssp             HHHHHHHHTSSSEEEECE
T ss_pred             HHHHHHHHHCCCEEEEEE
Confidence            577888999999886543

>d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein S11
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.0013  Score=48.54  Aligned_cols=92  Identities=11%  Similarity=0.095  Sum_probs=70.0

Q ss_pred             eEEEEecCCeEEEEEEECCCCeEEEEEecchhhhhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCchhhHH
Q 029747           90 TLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAERAREADVYTASYTPRERDKFEGKI  169 (188)
Q Consensus        90 RL~V~kSNkhiyAqVidd~~g~tVaSAST~Ek~ik~~L~s~~n~~AA~~vG~lLA~RakeaGI~~vvfdDRgg~kyhGrV  169 (188)
                      .+.|+-|.+++..+|.| .+|.++..+|+-..-+++...  +.-.||..+++.++++|++.||..|..--+|.  =.|| 
T Consensus         8 i~hI~~t~NNTiitlTD-~~G~~~~~~S~G~~gfkg~~K--~t~~Aa~~~a~~~~~~~~~~gi~~v~V~~kG~--G~GR-   81 (117)
T d2qalk1           8 VAHIHASFNNTIVTITD-RQGNALGWATAGGSGFRGSRK--STPFAAQVAAERCADAVKEYGIKNLEVMVKGP--GPGR-   81 (117)
T ss_dssp             EEEEECCSSCCEEEEEE-TTSCEEEEEETTTSSCCHHHH--TSHHHHHHHHHHHHHHHGGGTCCEEEEEEECC--STTT-
T ss_pred             EEEEEecCCCEEEEEEC-CCCCEEEEEeccccccccccc--cchHHHHHHHHHHHHHHHHcCCcEEEEEEeCC--CCch-
Confidence            47788999999999998 567788888887777776443  45789999999999999999999876421332  1234 


Q ss_pred             HHHHHHHHHCCcEeEeec
Q 029747          170 RAVVQSLIDNGIDVKIYL  187 (188)
Q Consensus       170 kA~adalRe~GL~f~~~~  187 (188)
                      .+++.++...||++..-.
T Consensus        82 ~~air~l~~~gl~I~~I~   99 (117)
T d2qalk1          82 ESTIRALNAAGFRITNIT   99 (117)
T ss_dssp             THHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHhCCCEEEEEE
Confidence            477889999999876543