Citrus Sinensis ID: 029750

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
MSRVPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAEKGWWKKLLRGDGKTPHYVKVDWDKWVDEDEDNGAGDLDLGGMDFSNFGGMGGDDGMGGFEDSDDEEVSKPQQEVRKAGDTNQEEEGEDKSDAGITEGKTEAAQST
ccccccEEEEEEccEEEEEEEEcccccccEEEEEccEEEEEEEccccccEEEEEEEccccccccccEEEEcccEEEEEEEEccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccc
cccccEEEEEEcccEEEEEEEEccccccEEEEccccEEEEEccccccccEEEEEEEEccccccccccccccccEEEEEEEEccccccHHHHccccccccEEEEcccccccccccccccccccccccHHHccccccccccccccccccccccccHHHHcccccccccccccccHHHccccccHHccccc
msrvpevkwaqrqDKVFITVqlpdaknakvnlepegvfsfsasagaeNHLYELKLELFDKvnveeskinvGVRSIFCIVEKAEKGWWKKllrgdgktphyvkvdwdkwvdededngagdldlggmdfsnfggmggddgmggfedsddeevskpqqevrkagdtnqeeegedksdagitegkteaaqst
msrvpevkwaqrqdkvfitvqlpdakNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEeskinvgvrsiFCIVEKAEKGwwkkllrgdgktphyvkvdwdkwvdEDEDNGAGDLDLGGMDFSNFGGMGGDDGMGGFEDSDDEEVSKPQqevrkagdtnqeeegedksdagitegkteaaqst
MSRVPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAEKGWWKKLLRGDGKTPHYvkvdwdkwvdededNGAGDLDLggmdfsnfggmggddgmggfedsddeeVSKPQQEVRKAGDTNQEEEGEDKSDAGITEGKTEAAQST
********WAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAEKGWWKKLLRGDGKTPHYVKVDWDKWVDED****************************************************************************
*SRVPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAEKGWWKKLLRGDGKTPHYVKVDWDKWVDEDEDNGAGDLDLG*****************************************************************
MSRVPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAEKGWWKKLLRGDGKTPHYVKVDWDKWVDEDEDNGAGDLDLGGMDFSNFGGMGGDDGMGGF**********************************************
**RVPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAEKGWWKKLLRGDGKTPHYVKVDWDKWVD******************************************************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSRVPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAEKGWWKKLLRGDGKTPHYVKVDWDKWVDEDEDNGAGDLDLGGMDFSNFGGMGGDDGMGGFEDSDDEEVSKPQQEVRKAGDTNQEEEGEDKSDAGITEGKTEAAQST
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query188 2.2.26 [Sep-21-2011]
Q6YYB0213 Uncharacterized protein O yes no 0.680 0.600 0.776 7e-53
P0C8Z0210 Uncharacterized protein O N/A no 0.680 0.609 0.776 7e-53
Q6ID70150 Uncharacterized protein A no no 0.595 0.746 0.535 4e-29
Q11118186 Protein wos2 OS=Schizosac yes no 0.744 0.752 0.358 8e-20
P83868160 Prostaglandin E synthase yes no 0.718 0.843 0.337 5e-10
Q9R0Q7160 Prostaglandin E synthase yes no 0.718 0.843 0.337 5e-10
Q5NVM4160 Prostaglandin E synthase yes no 0.718 0.843 0.331 1e-09
Q6PWL5160 Prostaglandin E synthase N/A no 0.718 0.843 0.331 1e-09
Q15185160 Prostaglandin E synthase yes no 0.718 0.843 0.331 1e-09
Q3ZBF7160 Prostaglandin E synthase yes no 0.718 0.843 0.331 1e-09
>sp|Q6YYB0|Y8359_ORYSJ Uncharacterized protein Os08g0359500 OS=Oryza sativa subsp. japonica GN=Os08g0359500 PE=2 SV=1 Back     alignment and function desciption
 Score =  206 bits (524), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 101/130 (77%), Positives = 113/130 (86%), Gaps = 2/130 (1%)

Query: 1   MSRVPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDK 60
           MSR PEVKWAQR DKV+ITVQL DAK+AKVNLEPEGVFSFSA+AG + +LYE KLEL DK
Sbjct: 1   MSRHPEVKWAQRIDKVYITVQLADAKDAKVNLEPEGVFSFSATAGTDGNLYESKLELNDK 60

Query: 61  VNVEESKINVGVRSIFCIVEKAEKGWWKKLLRGDGKTPHYVKVDWDKWVDEDEDNGAGDL 120
           VNVEESKI+VGVRSIFCIVEKAE  WWKKL+R D K PH+VKVDWDKWVDED+D    D+
Sbjct: 61  VNVEESKISVGVRSIFCIVEKAEAKWWKKLVRDDQKAPHFVKVDWDKWVDEDDD--GADV 118

Query: 121 DLGGMDFSNF 130
           ++ GMDFSNF
Sbjct: 119 NVDGMDFSNF 128

Oryza sativa subsp. japonica (taxid: 39947)
>sp|P0C8Z0|Y8359_ORYSI Uncharacterized protein OsI_027940 OS=Oryza sativa subsp. indica GN=OsI_027940 PE=1 SV=2 Back     alignment and function description
>sp|Q6ID70|Y3377_ARATH Uncharacterized protein At3g03773 OS=Arabidopsis thaliana GN=At3g03773 PE=1 SV=1 Back     alignment and function description
>sp|Q11118|WOS2_SCHPO Protein wos2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=wos2 PE=2 SV=1 Back     alignment and function description
>sp|P83868|TEBP_RAT Prostaglandin E synthase 3 OS=Rattus norvegicus GN=Ptges3 PE=1 SV=2 Back     alignment and function description
>sp|Q9R0Q7|TEBP_MOUSE Prostaglandin E synthase 3 OS=Mus musculus GN=Ptges3 PE=1 SV=1 Back     alignment and function description
>sp|Q5NVM4|TEBP_PONAB Prostaglandin E synthase 3 OS=Pongo abelii GN=PTGES3 PE=2 SV=1 Back     alignment and function description
>sp|Q6PWL5|TEBP_MACFA Prostaglandin E synthase 3 OS=Macaca fascicularis GN=PTGES3 PE=1 SV=1 Back     alignment and function description
>sp|Q15185|TEBP_HUMAN Prostaglandin E synthase 3 OS=Homo sapiens GN=PTGES3 PE=1 SV=1 Back     alignment and function description
>sp|Q3ZBF7|TEBP_BOVIN Prostaglandin E synthase 3 OS=Bos taurus GN=PTGES3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query188
297743870213 unnamed protein product [Vitis vinifera] 0.946 0.835 0.718 2e-64
225437334178 PREDICTED: uncharacterized protein OsI_0 0.946 1.0 0.718 3e-64
357442543222 hypothetical protein MTR_1g088700 [Medic 0.952 0.806 0.663 1e-60
449436507208 PREDICTED: uncharacterized protein OsI_0 0.973 0.879 0.647 1e-60
351723553174 uncharacterized protein LOC100499842 [Gl 0.888 0.959 0.686 2e-56
388502048228 unknown [Lotus japonicus] 0.962 0.793 0.549 2e-56
359807469200 uncharacterized protein LOC100796372 [Gl 0.691 0.65 0.809 3e-56
218201026274 hypothetical protein OsI_28951 [Oryza sa 0.680 0.467 0.776 1e-51
115476070213 Os08g0359500 [Oryza sativa Japonica Grou 0.680 0.600 0.776 3e-51
261260084210 RecName: Full=Uncharacterized protein Os 0.680 0.609 0.776 3e-51
>gi|297743870|emb|CBI36840.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  250 bits (638), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 135/188 (71%), Positives = 150/188 (79%), Gaps = 10/188 (5%)

Query: 1   MSRVPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDK 60
           MSR PEVKWAQR DKVFITV LPDAKNAKVNLEP+G F+FSASAGAENHLYELKL+LFDK
Sbjct: 36  MSRHPEVKWAQRADKVFITVLLPDAKNAKVNLEPDGDFTFSASAGAENHLYELKLDLFDK 95

Query: 61  VNVEESKINVGVRSIFCIVEKAEKGWWKKLLRGDGKTPHYVKVDWDKWVDEDEDNGAGDL 120
           VNVEESKIN+GVRSIFC+VEKAEKGWWKKLLRGD K PHY+KVDWDKWVDEDED G GDL
Sbjct: 96  VNVEESKINIGVRSIFCVVEKAEKGWWKKLLRGDEKAPHYLKVDWDKWVDEDEDTGLGDL 155

Query: 121 DLGGMDFSNFGGMGGDDGMGGFEDSDDEEVSKPQQEVRKAGDTNQEEEGEDKSDAGITEG 180
           DLGGMDFS F GM   +GMGG    DD + +  ++EV K      EE  E+  + G+   
Sbjct: 156 DLGGMDFSKFAGM---EGMGGDAMGDDLDDTDDEEEVSKPA----EENSENPDEHGV--- 205

Query: 181 KTEAAQST 188
           K+EAA S 
Sbjct: 206 KSEAAPSI 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225437334|ref|XP_002264898.1| PREDICTED: uncharacterized protein OsI_027940-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357442543|ref|XP_003591549.1| hypothetical protein MTR_1g088700 [Medicago truncatula] gi|355480597|gb|AES61800.1| hypothetical protein MTR_1g088700 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449436507|ref|XP_004136034.1| PREDICTED: uncharacterized protein OsI_027940-like [Cucumis sativus] gi|449498487|ref|XP_004160550.1| PREDICTED: uncharacterized protein OsI_027940-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|351723553|ref|NP_001236771.1| uncharacterized protein LOC100499842 [Glycine max] gi|255627059|gb|ACU13874.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388502048|gb|AFK39090.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|359807469|ref|NP_001241395.1| uncharacterized protein LOC100796372 [Glycine max] gi|255644738|gb|ACU22871.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|218201026|gb|EEC83453.1| hypothetical protein OsI_28951 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|115476070|ref|NP_001061631.1| Os08g0359500 [Oryza sativa Japonica Group] gi|75132349|sp|Q6YYB0.1|Y8359_ORYSJ RecName: Full=Uncharacterized protein Os08g0359500 gi|38637531|dbj|BAD03784.1| putative p23 co-chaperone [Oryza sativa Japonica Group] gi|38637557|dbj|BAD03808.1| putative p23 co-chaperone [Oryza sativa Japonica Group] gi|113623600|dbj|BAF23545.1| Os08g0359500 [Oryza sativa Japonica Group] gi|125603149|gb|EAZ42474.1| hypothetical protein OsJ_27041 [Oryza sativa Japonica Group] gi|215740803|dbj|BAG96959.1| unnamed protein product [Oryza sativa Japonica Group] gi|215767296|dbj|BAG99524.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|261260084|sp|P0C8Z0.2|Y8359_ORYSI RecName: Full=Uncharacterized protein OsI_027940 Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query188
TAIR|locus:2133269241 AT4G02450 "AT4G02450" [Arabido 0.526 0.410 0.7 8.5e-33
TAIR|locus:504955859204 AT3G03773 "AT3G03773" [Arabido 0.521 0.480 0.5 1.1e-21
POMBASE|SPAC9E9.13186 wos2 "p23 homolog, predicted c 0.473 0.478 0.37 3.5e-11
WB|WBGene00022599175 ZC395.10.2 [Caenorhabditis ele 0.505 0.542 0.323 3.9e-11
ZFIN|ZDB-GENE-040625-144158 ptges3b "prostaglandin E synth 0.468 0.556 0.377 9.4e-11
UNIPROTKB|G4MKS2209 MGG_06669 "Uncharacterized pro 0.5 0.449 0.308 9.7e-09
UNIPROTKB|A7YY55 362 PTPLAD1 "Very-long-chain (3R)- 0.484 0.251 0.333 3.2e-08
UNIPROTKB|Q3ZBF7160 PTGES3 "Prostaglandin E syntha 0.468 0.55 0.333 3.3e-08
UNIPROTKB|B4DP11139 PTGES3 "cDNA FLJ59942, highly 0.468 0.633 0.333 3.3e-08
UNIPROTKB|B4DP21130 PTGES3 "Prostaglandin E syntha 0.468 0.676 0.333 3.3e-08
TAIR|locus:2133269 AT4G02450 "AT4G02450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 70/100 (70%), Positives = 79/100 (79%)

Query:     1 MSRVPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDK 60
             MSR PEVKWA+  +K+F+TV L D K+ KVNL+PEGVF FSA  G ENH+YELKLEL DK
Sbjct:     1 MSRHPEVKWAETTEKIFLTVVLADTKDTKVNLDPEGVFDFSAKVGPENHVYELKLELADK 60

Query:    61 VNVEESKINVGVRSIFCIVEKAEKGWWKKLLRGDGKTPHY 100
             VNVEESKIN+G RSIFCI+EKAE   W KLLR   K PHY
Sbjct:    61 VNVEESKINIGERSIFCIIEKAEPERWNKLLRVK-KPPHY 99
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0005886 "plasma membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:504955859 AT3G03773 "AT3G03773" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPAC9E9.13 wos2 "p23 homolog, predicted co-chaperone Wos2" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
WB|WBGene00022599 ZC395.10.2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040625-144 ptges3b "prostaglandin E synthase 3b (cytosolic)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|G4MKS2 MGG_06669 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|A7YY55 PTPLAD1 "Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZBF7 PTGES3 "Prostaglandin E synthase 3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|B4DP11 PTGES3 "cDNA FLJ59942, highly similar to Prostaglandin E synthase 3 (EC 5.3.99.3)" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B4DP21 PTGES3 "Prostaglandin E synthase 3 (Cytosolic), isoform CRA_d" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P0C8Z0Y8359_ORYSINo assigned EC number0.77690.68080.6095N/Ano
Q6YYB0Y8359_ORYSJNo assigned EC number0.77690.68080.6009yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027981001
SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (182 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00007284001
SubName- Full=Chromosome chr2 scaffold_187, whole genome shotgun sequence; (544 aa)
   •• • 0.505

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query188
cd06465108 cd06465, p23_hB-ind1_like, p23_like domain found i 3e-47
cd0646384 cd06463, p23_like, Proteins containing this p23_li 4e-16
pfam0496978 pfam04969, CS, CS domain 5e-13
cd00237106 cd00237, p23, p23 binds heat shock protein (Hsp)90 2e-10
cd0646684 cd06466, p23_CS_SGT1_like, p23_like domain similar 3e-06
cd0029880 cd00298, ACD_sHsps_p23-like, This domain family in 3e-04
>gnl|CDD|107222 cd06465, p23_hB-ind1_like, p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins Back     alignment and domain information 
 Score =  149 bits (379), Expect = 3e-47
 Identities = 51/110 (46%), Positives = 69/110 (62%), Gaps = 3/110 (2%)

Query: 5   PEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVE 64
           P V WAQR D V++T++LPDAK+ K+ LEP    SF A  G     YE  LE + +++ E
Sbjct: 1   PPVLWAQRSDVVYLTIELPDAKDPKIKLEPT-SLSFKAKGGGGGKKYEFDLEFYKEIDPE 59

Query: 65  ESKINVGVRSIFCIVEKAEKG-WWKKLLRGDGKTPHYVKVDWDKWVDEDE 113
           ESK  V  R I  ++ K E G +W +L +  GK   ++KVD+DKWVDEDE
Sbjct: 60  ESKYKVTGRQIEFVLRKKEAGEYWPRLTKEKGK-LPWLKVDFDKWVDEDE 108

hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity. Length = 108
>gnl|CDD|107220 cd06463, p23_like, Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1 Back     alignment and domain information
>gnl|CDD|218355 pfam04969, CS, CS domain Back     alignment and domain information
>gnl|CDD|107218 cd00237, p23, p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor Back     alignment and domain information
>gnl|CDD|107223 cd06466, p23_CS_SGT1_like, p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1) Back     alignment and domain information
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 188
KOG3158180 consensus HSP90 co-chaperone p23 [Posttranslationa 100.0
cd00237106 p23 p23 binds heat shock protein (Hsp)90 and parti 100.0
cd06465108 p23_hB-ind1_like p23_like domain found in human (h 99.97
cd0648984 p23_CS_hSgt1_like p23_like domain similar to the C 99.86
PLN03088356 SGT1, suppressor of G2 allele of SKP1; Provisional 99.86
cd0648887 p23_melusin_like p23_like domain similar to the C- 99.85
cd0646892 p23_CacyBP p23_like domain found in proteins simil 99.82
cd0646684 p23_CS_SGT1_like p23_like domain similar to the C- 99.79
KOG1309196 consensus Suppressor of G2 allele of skp1 [Signal 99.74
PF0496979 CS: CS domain; InterPro: IPR017447 The function of 99.73
cd0646978 p23_DYX1C1_like p23_like domain found in proteins 99.72
cd0646785 p23_NUDC_like p23_like domain of NUD (nuclear dist 99.72
cd0646384 p23_like Proteins containing this p23_like domain 99.72
cd0649385 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear 99.69
cd0649087 p23_NCB5OR p23_like domain found in NAD(P)H cytoch 99.59
cd0649287 p23_mNUDC_like p23-like NUD (nuclear distribution) 99.59
cd06495102 p23_NUDCD3_like p23-like NUD (nuclear distribution 99.58
cd0649493 p23_NUDCD2_like p23-like NUD (nuclear distribution 99.57
KOG1667320 consensus Zn2+-binding protein Melusin/RAR1, conta 99.37
KOG2265179 consensus Nuclear distribution protein NUDC [Signa 99.33
cd0029880 ACD_sHsps_p23-like This domain family includes the 99.14
KOG3260224 consensus Calcyclin-binding protein CacyBP [Signal 98.9
COG5091368 SGT1 Suppressor of G2 allele of skp1 and related p 98.72
KOG4379 596 consensus Uncharacterized conserved protein (tumor 98.09
COG0071146 IbpA Molecular chaperone (small heat shock protein 97.79
cd0647292 ACD_ScHsp26_like Alpha crystallin domain (ACD) fou 97.66
cd0647193 ACD_LpsHSP_like Group of bacterial proteins contai 97.37
cd0646488 ACD_sHsps-like Alpha-crystallin domain (ACD) of al 97.36
PF00011102 HSP20: Hsp20/alpha crystallin family This prints e 97.2
cd0652683 metazoan_ACD Alpha-crystallin domain (ACD) of meta 96.44
cd0649786 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai 96.2
cd0647586 ACD_HspB1_like Alpha crystallin domain (ACD) found 96.15
cd0647090 ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun 96.13
cd0647981 ACD_HspB7_like Alpha crystallin domain (ACD) found 95.81
PRK10743137 heat shock protein IbpA; Provisional 95.72
PF08190328 PIH1: pre-RNA processing PIH1/Nop17 95.68
cd0649884 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai 95.68
cd0647883 ACD_HspB4-5-6 Alpha-crystallin domain found in alp 95.46
PRK11597142 heat shock chaperone IbpB; Provisional 94.82
cd0647683 ACD_HspB2_like Alpha crystallin domain (ACD) found 94.46
cd0648187 ACD_HspB9_like Alpha crystallin domain (ACD) found 94.29
cd0647783 ACD_HspB3_Like Alpha crystallin domain (ACD) found 90.44
KOG3158180 consensus HSP90 co-chaperone p23 [Posttranslationa 90.27
cd0648287 ACD_HspB10 Alpha crystallin domain (ACD) found in 88.72
cd0648091 ACD_HspB8_like Alpha-crystallin domain (ACD) found 83.29
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-43  Score=282.46  Aligned_cols=151  Identities=49%  Similarity=0.879  Sum_probs=130.3

Q ss_pred             CCCCCeEEEecCCeEEEEEEcCCCCcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEEe
Q 029750            2 SRVPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEK   81 (188)
Q Consensus         2 s~~P~v~WaQr~~~V~LtI~l~d~kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~leLf~~I~peeSk~~v~~rkIei~LkK   81 (188)
                      .++|.|.||||.+.|||||+|.++++++|+|++. .|+|+|+++++++.|+++|+||++|+|++|++++.+|.|+++|+|
T Consensus         5 ~~~p~v~Waqr~~~vyltv~Ved~~d~~v~~e~~-~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~~r~if~i~~K   83 (180)
T KOG3158|consen    5 MQPPEVKWAQRRDLVYLTVCVEDAKDVHVNLEPS-KLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRTSRSIFCILRK   83 (180)
T ss_pred             ccCCcchhhhhcCeEEEEEEeccCccceeecccc-EEEEEeccCCCceeeEEeeehhhhcCHhhccccccceEEEEEEEc
Confidence            4789999999999999999999999999999998 999999988888999999999999999999999999999999999


Q ss_pred             CCC-CcccceecCCCCCCCceeecCCCCccccccCCCCCCC----CCCCccccC-CCCCCCCCCCC---CCCCCCCCCCC
Q 029750           82 AEK-GWWKKLLRGDGKTPHYVKVDWDKWVDEDEDNGAGDLD----LGGMDFSNF-GGMGGDDGMGG---FEDSDDEEVSK  152 (188)
Q Consensus        82 ~~~-~~WprL~k~~~kk~~~lkvDwdkw~DEddee~~~~~~----~~~~df~~~-~g~gg~~~~~~---~dd~dd~~~~~  152 (188)
                      ++. .+|||||+++. |+||||+||+||+||||++++++.+    .++|+|.++ |||||+++++-   ..+..+++||+
T Consensus        84 ~e~~~~WprLtkeK~-K~hwLkvDFdkW~Dededde~~~~~~~g~a~g~~~~~~mggmgg~~~~Df~~~~~~~~~~d~~d  162 (180)
T KOG3158|consen   84 KELGEYWPRLTKEKA-KLHWLKVDFDKWVDEDEDDEAEDADGMGGAGGMDFSQMMGGMGGAEGVDFGVLEGDGADDDMPD  162 (180)
T ss_pred             cccccccchhhhccc-ccceEEcchhhccccccccchhhccccccccccchhhccccCCcccccccccccccccCCCCCC
Confidence            876 79999999999 8999999999999999887654443    566777774 66777543222   23556677888


Q ss_pred             ch
Q 029750          153 PQ  154 (188)
Q Consensus       153 ~~  154 (188)
                      ++
T Consensus       163 ~e  164 (180)
T KOG3158|consen  163 SE  164 (180)
T ss_pred             CC
Confidence            88

>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor Back     alignment and domain information
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins Back     alignment and domain information
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins Back     alignment and domain information
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP) Back     alignment and domain information
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1) Back     alignment and domain information
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms] Back     alignment and domain information
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown Back     alignment and domain information
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1 Back     alignment and domain information
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins Back     alignment and domain information
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1 Back     alignment and domain information
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins Back     alignment and domain information
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins Back     alignment and domain information
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins Back     alignment and domain information
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins Back     alignment and domain information
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins Back     alignment and domain information
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only] Back     alignment and domain information
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms] Back     alignment and domain information
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms] Back     alignment and domain information
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only] Back     alignment and domain information
>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown] Back     alignment and domain information
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins Back     alignment and domain information
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry Back     alignment and domain information
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa) Back     alignment and domain information
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins Back     alignment and domain information
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins Back     alignment and domain information
>PRK10743 heat shock protein IbpA; Provisional Back     alignment and domain information
>PF08190 PIH1: pre-RNA processing PIH1/Nop17 Back     alignment and domain information
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa) Back     alignment and domain information
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20 Back     alignment and domain information
>PRK11597 heat shock chaperone IbpB; Provisional Back     alignment and domain information
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins Back     alignment and domain information
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins Back     alignment and domain information
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins Back     alignment and domain information
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins Back     alignment and domain information
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query188
2kmw_A150 Solution Structure Of At3g03773.1 Protein From Arab 4e-22
1ejf_A125 Crystal Structure Of The Human Co-Chaperone P23 Len 3e-07
>pdb|2KMW|A Chain A, Solution Structure Of At3g03773.1 Protein From Arabidopsis Thaliana Length = 150 Back     alignment and structure 
Iteration: 1

 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 67/99 (67%), Gaps = 2/99 (2%)
Query: 2   SRVPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKV 61
           SR PEV WAQR DKV++TV LPDAK+  V  EP+G+FSFSA  GA+   +E  LEL+ K+
Sbjct: 2   SRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSA-LGAQGERFEFSLELYGKI 60
Query: 62  NVEESKINVGVRSIFCIVEKAEKGWWKKLLRGDGKTPHY 100
             E  K NVG+R+I   ++K E+ WW +LL+ + K   Y
Sbjct: 61  MTEYRK-NVGLRNIIFSIQKEERSWWTRLLKSEEKPAPY 98
>pdb|1EJF|A Chain A, Crystal Structure Of The Human Co-Chaperone P23 Length = 125 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query188
2kmw_A150 Uncharacterized protein AT3G03773; protein structu 1e-42
1ejf_A125 Progesterone receptor P23; chaperone, CO-chaperone 1e-38
2cg9_X134 CO-chaperone protein SBA1; chaperone complex, HSP9 5e-34
1rl1_A114 Suppressor of G2 allele of SKP1 homolog; beta sand 2e-16
2xcm_C92 SGT1-like protein, cytosolic heat shock protein 90 5e-10
2o30_A131 Nuclear movement protein; MCSG, structural genomic 2e-07
1wgv_A124 KIAA1068 protein; CS domain, HSP20-like fold, stru 2e-04
1x5m_A127 Calcyclin-binding protein; CS domain, structural g 4e-04
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} Length = 150 Back     alignment and structure
 Score =  138 bits (350), Expect = 1e-42
 Identities = 66/148 (44%), Positives = 89/148 (60%), Gaps = 3/148 (2%)

Query: 2   SRVPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKV 61
           SR PEV WAQR DKV++TV LPDAK+  V  EP+G+FSFSA  GA+   +E  LEL+ K+
Sbjct: 2   SRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSAL-GAQGERFEFSLELYGKI 60

Query: 62  NVEESKINVGVRSIFCIVEKAEKGWWKKLLRGDGKTPHYVKVDWDKWVDEDEDNGAGDLD 121
             E  K NVG+R+I   ++K E+ WW +LL+ + K   Y+KVDW+KW DEDE+  +    
Sbjct: 61  MTEYRK-NVGLRNIIFSIQKEERSWWTRLLKSEEKPAPYIKVDWNKWCDEDEEVNSETAS 119

Query: 122 LGGMDFSNFGGMGG-DDGMGGFEDSDDE 148
                F N       DDG+    D +  
Sbjct: 120 DDESAFVNQDSESSDDDGLLYLPDLEKA 147
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Length = 125 Back     alignment and structure
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Length = 134 Back     alignment and structure
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Length = 114 Back     alignment and structure
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Length = 92 Back     alignment and structure
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Length = 131 Back     alignment and structure
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Length = 124 Back     alignment and structure
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 127 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query188
2kmw_A150 Uncharacterized protein AT3G03773; protein structu 100.0
1ejf_A125 Progesterone receptor P23; chaperone, CO-chaperone 100.0
2cg9_X134 CO-chaperone protein SBA1; chaperone complex, HSP9 100.0
2xcm_C92 SGT1-like protein, cytosolic heat shock protein 90 99.89
1rl1_A114 Suppressor of G2 allele of SKP1 homolog; beta sand 99.88
2o30_A131 Nuclear movement protein; MCSG, structural genomic 99.87
1wgv_A124 KIAA1068 protein; CS domain, HSP20-like fold, stru 99.86
1x5m_A127 Calcyclin-binding protein; CS domain, structural g 99.86
1wh0_A134 Ubiquitin carboxyl-terminal hydrolase 19; USP, CS 99.86
1wfi_A131 Nuclear distribution gene C homolog; NUDC, riken s 99.84
3qor_A121 Nuclear migration protein NUDC; beta-sandwich, cha 99.78
2rh0_A157 NUDC domain-containing protein 2; 13542905, nuclea 99.77
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 98.21
2k8q_A134 Protein SHQ1; beta-sandwich, CS domain, nucleus, s 98.19
4fei_A102 Heat shock protein-related protein; stress respons 98.17
3eud_A115 Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A 98.14
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 97.77
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 97.74
1gme_A151 Heat shock protein 16.9B; small heat shock protein 97.63
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 97.33
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 97.18
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 96.97
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 96.8
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 96.47
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 96.33
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 91.29
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
Probab=100.00  E-value=8.3e-39  Score=253.26  Aligned_cols=141  Identities=43%  Similarity=0.774  Sum_probs=120.5

Q ss_pred             CCCCCCeEEEecCCeEEEEEEcCCCCcceEEEe-cCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEE
Q 029750            1 MSRVPEVKWAQRQDKVFITVQLPDAKNAKVNLE-PEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIV   79 (188)
Q Consensus         1 ms~~P~v~WaQr~~~V~LtI~l~d~kd~kV~~~-~~~~l~f~~~~~~~~~~Y~~~leLf~~I~peeSk~~v~~rkIei~L   79 (188)
                      |+++|+|.||||.+.|+|||+++++++++|+|+ ++ +|+|++. +.+++.|.|+|+||++|+|+ |+|++.+|+|+|+|
T Consensus         1 m~~~P~~~W~Qt~~~V~ltI~l~~~~~v~V~~~~~~-~l~~~~~-~~~~~~y~~~l~L~~~Idpe-S~~~v~~~kIei~L   77 (150)
T 2kmw_A            1 SSRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPQG-LFSFSAL-GAQGERFEFSLELYGKIMTE-YRKNVGLRNIIFSI   77 (150)
T ss_dssp             CEECCCEEEEECSSEEEEEECCSSEEEEEECCCTTE-EEEEEEE-TTTTEEEEEEEEBSSCEEEE-EEEEEESSSEEEEE
T ss_pred             CCcCCcEEEEeCCCEEEEEEEeCCCCceEEEEecCC-EEEEEEE-cCCCceEEEEeEhhhccccc-ceEEecCCEEEEEE
Confidence            899999999999999999999999999999999 57 9999997 66778999999999999999 99999999999999


Q ss_pred             EeCCCCcccceecCCCCCCCceeecCCCCccccccCCCCCCCCCCCccccCCCCCCCCCCC-CCCCCCCCCC---CCchH
Q 029750           80 EKAEKGWWKKLLRGDGKTPHYVKVDWDKWVDEDEDNGAGDLDLGGMDFSNFGGMGGDDGMG-GFEDSDDEEV---SKPQQ  155 (188)
Q Consensus        80 kK~~~~~WprL~k~~~kk~~~lkvDwdkw~DEddee~~~~~~~~~~df~~~~g~gg~~~~~-~~dd~dd~~~---~~~~~  155 (188)
                      +|+++++||||++++.|++||+++||+||+||+++++.++ +.+++          .+.|+ +.+++||+.|   |+|++
T Consensus        78 ~K~e~~~W~rL~k~~~K~~~~lk~Dwdkw~dedeeee~~~-~~~~~----------~~~~~~d~~~~~d~~~~~~p~l~~  146 (150)
T 2kmw_A           78 QKEERSWWTRLLKSEEKPAPYIKVDWNKWCDEDEEVNSET-ASDDE----------SAFVNQDSESSDDDGLLYLPDLEK  146 (150)
T ss_dssp             EECCSSCCSCSBSCCSSCCTTEEECSSSSCCSSCCCCSSC-CCCCC----------CCCCCCCCCCCCCCCCCCCCCSCC
T ss_pred             EECCCCcCcccccCCcccCccccccchhcCCchhcccccc-cCccc----------ccccccccccccccCCccCCCHHH
Confidence            9999899999999987339999999999999998877543 22221          11122 3355788889   99874
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Back     alignment and structure
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Back     alignment and structure
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Back     alignment and structure
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Back     alignment and structure
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4 Back     alignment and structure
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A Back     alignment and structure
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus} Back     alignment and structure
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Back     alignment and structure
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans} Back     alignment and structure
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Back     alignment and structure
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Back     alignment and structure
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 188
d1ejfa_110 b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapien 2e-30
d1rl1a_92 b.15.1.3 (A:) Suppressor of G2 allele of skp1 homo 1e-18
d1wh0a_134 b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolas 1e-09
d1wgva_124 b.15.1.4 (A:) NudC domain containing protein 3, NU 8e-08
d1wfia_131 b.15.1.4 (A:) Nuclear migration protein nudC {Mous 3e-04
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Length = 110 Back     information, alignment and structure

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (264), Expect = 2e-30
 Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 3/111 (2%)

Query: 3   RVPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVN 62
           +    KW  R+D VFI   + D+K+  VN E     +FS   G++N  +  +++LF  ++
Sbjct: 2   QPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSK-LTFSCLGGSDNFKHLNEIDLFHCID 60

Query: 63  VEESKINVGVRSIFCIVEKAEKG-WWKKLLRGDGKTPHYVKVDWDKWVDED 112
             +SK     RSI C + K E G  W +L +   K  +++ VD++ W D +
Sbjct: 61  PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAK-LNWLSVDFNNWKDWE 110
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Length = 92 Back     information, alignment and structure
>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 134 Back     information, alignment and structure
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]} Length = 131 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query188
d1ejfa_110 Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960 99.97
d1rl1a_92 Suppressor of G2 allele of skp1 homolog, gst1 {Hum 99.89
d1wh0a_134 Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H 99.76
d1wgva_124 NudC domain containing protein 3, NUDCD3 (KIAA1068 99.71
d1wfia_131 Nuclear migration protein nudC {Mouse (Mus musculu 99.55
d1shsa_115 Small heat shock protein {Archaeon Methanococcus j 97.59
d1gmea_150 Small heat shock protein {Wheat (Triticum aestivum 97.43
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.4e-32  Score=200.35  Aligned_cols=108  Identities=30%  Similarity=0.563  Sum_probs=100.9

Q ss_pred             CCCCeEEEecCCeEEEEEEcCCCCcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEEeC
Q 029750            3 RVPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKA   82 (188)
Q Consensus         3 ~~P~v~WaQr~~~V~LtI~l~d~kd~kV~~~~~~~l~f~~~~~~~~~~Y~~~leLf~~I~peeSk~~v~~rkIei~LkK~   82 (188)
                      +||++.||||.+.|+|+|.++++++++|+|+++ ++.|++.++..+..|.++++||++|+|++|+|++.+++|+|+|+|+
T Consensus         2 ~p~~~~W~Qt~~~V~i~I~v~~~~~~~v~i~~~-~l~~~~~~~~~~~~y~l~~~L~~~I~~~~s~~~v~~~kiei~L~K~   80 (110)
T d1ejfa_           2 QPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKS-KLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKG   80 (110)
T ss_dssp             BCCCEEEEECSSEEEEEECCTTEEEEEEEEETT-EEEEEEEETTTTEEEEEEEEBSSCEEEEEEEEEECSSCEEEEEEES
T ss_pred             CCCCcEEEECCCEEEEEEEeCCCCCceEEEEec-eEEEEEEecCCCceEEEEEEcccCcccCccEEEEeCCEEEEEEEEc
Confidence            468899999999999999999999999999999 9999998766778899999999999999999999999999999998


Q ss_pred             CC-CcccceecCCCCCCCceeecCCCCcccc
Q 029750           83 EK-GWWKKLLRGDGKTPHYVKVDWDKWVDED  112 (188)
Q Consensus        83 ~~-~~WprL~k~~~kk~~~lkvDwdkw~DEd  112 (188)
                      ++ .+||||++++. |++|+++|||||+|++
T Consensus        81 ~~~~~W~~L~~~~~-K~~~~kvD~dkw~d~~  110 (110)
T d1ejfa_          81 ESGQSWPRLTKERA-KLNWLSVDFNNWKDWE  110 (110)
T ss_dssp             STTCCCSSSBSSCC-CCTTEEECTTTCCCCC
T ss_pred             CCCCCCCceecCCC-CcCcEEccchheEcCC
Confidence            86 48999999998 7999999999999974
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure