Citrus Sinensis ID: 029766

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRW
Secondary Structure (PSIPRED)
cccHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHcccHHHHHHHHHHHHHHHHHHHccccHEEEEEEEEEEcccccEEccc
Coil and Loop (DISEMBL)
MAMSEQTVTAIKSYQNQAQVLVKNyiiadpfipyTSILAGLLACKVVYDLTQLISTFYFKAYNgltkiqrmewnnrgiSTVHAIFITALSLYYVFWSdlfsdqqhtgpitfrsswlsnfglgvsVGYFLADLGMIFWLypslggmeyVVHHSLSGIAVAYSMFSGEGQLYTYMVLISevttpeinmrw
Flexible Loop (DISEMBL)
MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISevttpeinmrw
Low Complexity Region (SEG)
MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRW
Disordered region (IsUnstruct)
*********AIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVT********
Disordered Region (DISOPRED)
************SYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRW
Disordered Region (DISEMBL)
*********AIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRW
Disordered Region (DISPRO)
****EQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRW
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	188	2.2.26 [Sep-21-2011]
Q6PGS5	262	Transmembrane protein 56-	N/A	no	0.680	0.488	0.284	3e-10
Q5XIY2	264	Transmembrane protein 56-	no	no	0.712	0.507	0.280	1e-09
Q8CGF5	276	Transmembrane protein 56	yes	no	0.654	0.445	0.257	1e-09
Q96MV1	263	Transmembrane protein 56	yes	no	0.654	0.467	0.273	1e-08
Q6GLX2	258	Transmembrane protein 56-	N/A	no	0.824	0.600	0.242	4e-07
Q6P4N1	259	Transmembrane protein 56	no	no	0.813	0.590	0.238	1e-06
Q550S9	257	Transmembrane protein 56	yes	no	0.765	0.560	0.257	3e-05
Q1LXV8	242	Transmembrane protein 136	no	no	0.590	0.458	0.313	8e-05
Q0VD42	245	Transmembrane protein 136	no	no	0.648	0.497	0.294	0.0002
Q3TYE7	245	Transmembrane protein 136	no	no	0.659	0.506	0.282	0.0003

>sp|Q6PGS5|TM56B_XENLA Transmembrane protein 56-B OS=Xenopus laevis GN=tmem56-b PE=2 SV=1

 Score = 65.1 bits (157), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 73/137 (53%), Gaps = 9/137 (6%)

Query: 54  ISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRS 113
           +ST     ++ L+  Q++EWN+R +S+ HA+ +    LY +    ++ D  +  P+ +  
Sbjct: 30  LSTRLTGGFHKLSARQKIEWNSRTVSSFHALVVGCFCLYIL----VYDDAVNADPV-WGD 84

Query: 114 SWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQL--YT 171
            ++    + V+ GY ++DL +I + +  +G   +V HH  +  A  Y +  GEG L  + 
Sbjct: 85  PFMVKLNVAVTSGYLISDLLLIIYYWKEIGDKYFVTHHLAALYACYYVL--GEGMLPYFG 142

Query: 172 YMVLISEVTTPEINMRW 188
              LI+E +TP +N RW
Sbjct: 143 NFRLIAEFSTPFVNQRW 159

Xenopus laevis (taxid: 8355)

>sp|Q5XIY2|TM56B_DANRE Transmembrane protein 56-B OS=Danio rerio GN=tmem56b PE=2 SV=1

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 71/139 (51%), Gaps = 5/139 (3%)

Query: 50  LTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPI 109
           ++ ++S+ + + Y  L   +  +WN+R +STVHA+ I  L   Y+ W D   D  +  P+
Sbjct: 23  VSPVLSSNFTQGYGKLPPNKLNDWNSRLVSTVHAL-IVGLFCLYILWYD---DAVNEDPV 78

Query: 110 TFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQL 169
            +    L    + ++ GY   DL ++   + ++G + +V HH  +  A  Y +  G    
Sbjct: 79  -WGDPNLVKLNVAITCGYLFYDLLLLACNWSTMGDVFFVCHHLAALYAYGYVLTRGVLPY 137

Query: 170 YTYMVLISEVTTPEINMRW 188
           +    LISE++TP +N RW
Sbjct: 138 FANFRLISELSTPFVNQRW 156

Danio rerio (taxid: 7955)

>sp|Q8CGF5|TMM56_MOUSE Transmembrane protein 56 OS=Mus musculus GN=Tmem56 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 67/128 (52%), Gaps = 5/128 (3%)

Query: 61  AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
            YN L+  +++EWN+R +ST H++ +    LY  F    F +   T P+    +++ N  
Sbjct: 50  GYNSLSIDKKIEWNSRVVSTCHSLLVGIFGLYLFF----FDEATITDPLWGDPTYV-NIN 104

Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVT 180
           +  + GY ++DL +I + +  +G   +++HH     A  + + +G         L++E++
Sbjct: 105 IATASGYLISDLLIILFNWKVIGDKFFIIHHCAGLTAYYFVLTTGALAYIANFRLLAELS 164

Query: 181 TPEINMRW 188
           +P +N RW
Sbjct: 165 SPFVNQRW 172

Mus musculus (taxid: 10090)

>sp|Q96MV1|TMM56_HUMAN Transmembrane protein 56 OS=Homo sapiens GN=TMEM56 PE=1 SV=1

 Score = 59.7 bits (143), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 68/128 (53%), Gaps = 5/128 (3%)

Query: 61  AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
            +N L+  +++EWN+R +ST H++ +    L Y+F   LF +     P+    S L+N  
Sbjct: 37  GFNSLSFKKKIEWNSRVVSTCHSLVVGIFGL-YIF---LFDEATKADPLWGGPS-LANVN 91

Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVT 180
           + ++ GY ++DL +I   +  +G   +++HH  S  A    + +G         L++E++
Sbjct: 92  IAIASGYLISDLSIIILYWKVIGDKFFIMHHCASLYAYYLVLKNGVLAYIGNFRLLAELS 151

Query: 181 TPEINMRW 188
           +P +N RW
Sbjct: 152 SPFVNQRW 159

Homo sapiens (taxid: 9606)

>sp|Q6GLX2|TM56A_XENLA Transmembrane protein 56-A OS=Xenopus laevis GN=tmem56-a PE=2 SV=1

 Score = 54.7 bits (130), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 6/161 (3%)

Query: 29  DPFIPYTSILAGLLACKVVYD-LTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFIT 87
           D  I Y  +    L  ++++  ++  + T Y   Y  L+  ++ EW++R +ST HA+ + 
Sbjct: 3   DVLISYCVVTGSFLGFQLLFSAISPRLFTKYSSTYRQLSFGKQCEWDSRFVSTNHALIVG 62

Query: 88  ALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEY 147
           +  LY +     + D  +  PI     W+    + ++ GY + DL ++   +  +     
Sbjct: 63  SACLYIL----AYDDAVNADPIWGDPFWV-KMNVAITCGYLVQDLLLLARFWKVMRDPYM 117

Query: 148 VVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRW 188
           V HH     +  Y +  G    +    LISE++TP +N RW
Sbjct: 118 VCHHLAVFYSYGYVLNRGVLPYFANFRLISELSTPFVNQRW 158

Xenopus laevis (taxid: 8355)

>sp|Q6P4N1|TMM56_XENTR Transmembrane protein 56 OS=Xenopus tropicalis GN=tmem56 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 6/159 (3%)

Query: 31  FIPYTSILAGLLACKVVYDL-TQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITAL 89
           FI Y  +    L  ++++ + +    T Y   Y  L+  ++ EW++R +ST HA+ + + 
Sbjct: 6   FISYCVVTGSFLGFQLLFSIISPRTFTKYSSTYRQLSFGKQCEWDSRCVSTTHALVVGSG 65

Query: 90  SLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVV 149
            LY +     + +  +  PI     W+    + ++ GY + DL ++   +  +     V 
Sbjct: 66  CLYIL----AYDEAVNADPIWGDPFWV-KMNVAITCGYLVHDLLLLARFWKVMRDPYMVC 120

Query: 150 HHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRW 188
           HH     +  Y +  G    +    LISE++TP +N RW
Sbjct: 121 HHLAVFYSYGYVLNRGVLPYFANFRLISELSTPFVNQRW 159

Xenopus tropicalis (taxid: 8364)

>sp|Q550S9|TM56B_DICDI Transmembrane protein 56 homolog B OS=Dictyostelium discoideum GN=tmem56b PE=3 SV=1

 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 82/159 (51%), Gaps = 15/159 (9%)

Query: 37  ILAGLLACKVVYD-----LTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSL 91
           IL   L C +++      L ++I   + K   G  + +R+EW NR ISTV+AI  +ALS+
Sbjct: 8   ILYQDLPCFLLFTSLHLFLPKIIEIIFKKNNIGFYERKRIEWPNRIISTVNAIVTSALSI 67

Query: 92  YYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHH 151
           Y +++++   +   +      +S +S F       YF+ D  +  +    L     ++HH
Sbjct: 68  YCLYYNEWIVNSLRS------TSEMSYFIFKFITYYFIYDFIISSYYSKYLFTWGNLLHH 121

Query: 152 SLSGIAVAYSMFSGEGQLYTYMV--LISEVTTPEINMRW 188
           +++   ++++   G+G  +  ++    +E+TTP IN+R+
Sbjct: 122 TIA--LLSFTFLGGKGLAHHLLLSYTFTEITTPLINLRF 158

Dictyostelium discoideum (taxid: 44689)

>sp|Q1LXV8|TM136_DANRE Transmembrane protein 136 OS=Danio rerio GN=tmem136 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 7/118 (5%)

Query: 72  EWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLAD 131
           EWN R ++  H I I  L+ Y  F   +      T P T  +++     L +S+GYFL D
Sbjct: 32  EWNCRLVTLFHGILIICLTAYIGF---IAGPWPFTHPGT-ENTYFQILTLVLSLGYFLFD 87

Query: 132 LGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLI-SEVTTPEINMRW 188
             M + +Y    G   + HH++S   +  ++  GE  + T  VL  SE+T P +  RW
Sbjct: 88  --MAWCVYFRTEGPVMLAHHTMSIFGILLALGLGESGIETCAVLFGSEITNPLLQARW 143

Danio rerio (taxid: 7955)

>sp|Q0VD42|TM136_BOVIN Transmembrane protein 136 OS=Bos taurus GN=TMEM136 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 7/129 (5%)

Query: 61  AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
           ++  L K +  EWN R ++  H I    LS Y  F    +       P T     L    
Sbjct: 22  SFCRLNKHRSYEWNCRLVTFTHGILSIGLSAYIGFIDGPWPFTHPGSPNTP----LQVHV 77

Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLI-SEV 179
           L +++GYF+ DLG    +Y    G   + HH+LS + +  ++  GE       VL  SE+
Sbjct: 78  LCLTLGYFIFDLGWC--IYFRSEGPLMLAHHTLSILGIIVALVLGESGTEVNAVLFGSEI 135

Query: 180 TTPEINMRW 188
           T P + +RW
Sbjct: 136 TNPLLQIRW 144

Bos taurus (taxid: 9913)

>sp|Q3TYE7|TM136_MOUSE Transmembrane protein 136 OS=Mus musculus GN=Tmem136 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 7/131 (5%)

Query: 59  FKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSN 118
           + ++  L K +  EW+ R ++  H +    LS Y  F    +       P T     L  
Sbjct: 20  YTSFCCLNKHRSCEWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPGSPNTP----LQV 75

Query: 119 FGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLI-S 177
             L +++GYF+ DLG    +Y    G   + HH+LS + +  ++  GE       VL  S
Sbjct: 76  HVLCLTLGYFIFDLGWC--IYFQSEGPLMLAHHTLSILGIIMALALGESGTEVNAVLFGS 133

Query: 178 EVTTPEINMRW 188
           E+T P + MRW
Sbjct: 134 EITNPLLQMRW 144

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
359484042	275	PREDICTED: transmembrane protein 56-like	1.0	0.683	0.813	1e-86
224136440	275	predicted protein [Populus trichocarpa]	1.0	0.683	0.792	2e-84
224115498	275	predicted protein [Populus trichocarpa]	1.0	0.683	0.781	6e-84
449487670	274	PREDICTED: transmembrane protein 56-B-li	1.0	0.686	0.776	1e-83
296085343	267	unnamed protein product [Vitis vinifera]	0.952	0.670	0.826	1e-83
449455419	274	PREDICTED: transmembrane protein 56-B-li	1.0	0.686	0.776	2e-83
255550713	275	conserved hypothetical protein [Ricinus	1.0	0.683	0.787	3e-82
297851934	278	hypothetical protein ARALYDRAFT_473644 [	0.984	0.665	0.756	2e-78
18397885	278	TRAM, LAG1 and CLN8 (TLC) lipid-sensing	0.984	0.665	0.751	3e-78
222423958	278	AT1G31300 [Arabidopsis thaliana]	0.984	0.665	0.745	5e-77

>gi|359484042|ref|XP_002263050.2| PREDICTED: transmembrane protein 56-like [Vitis vinifera]

 Score =  324 bits (831), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 153/188 (81%), Positives = 172/188 (91%)

Query: 1   MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFK 60
           MA SE+T+ AIK+YQNQA+ LVK+Y++ADPFIPYTSIL+GL ACK+VYDLTQLISTFYFK
Sbjct: 1   MASSERTIMAIKAYQNQAEQLVKDYLLADPFIPYTSILSGLFACKMVYDLTQLISTFYFK 60

Query: 61  AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
           +Y GLTKIQR+EWNNR +STVHA FI ALSLY+VFWSDLFSD +  G +TFRSS LS FG
Sbjct: 61  SYAGLTKIQRIEWNNRSMSTVHAFFIAALSLYFVFWSDLFSDHRLAGLVTFRSSPLSTFG 120

Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVT 180
           LGVSVGYFLAD+GMIFWLYPSLGG+EY+VHHSLS IAVAY+M SGEGQLYTYMVLISEVT
Sbjct: 121 LGVSVGYFLADIGMIFWLYPSLGGIEYIVHHSLSAIAVAYAMMSGEGQLYTYMVLISEVT 180

Query: 181 TPEINMRW 188
           TPEINMRW
Sbjct: 181 TPEINMRW 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136440|ref|XP_002322330.1| predicted protein [Populus trichocarpa] gi|222869326|gb|EEF06457.1| predicted protein [Populus trichocarpa]

 Score =  317 bits (811), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 149/188 (79%), Positives = 164/188 (87%)

Query: 1   MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFK 60
           MAMS +T  AIKSYQNQA+ LVKNY++ADPFIPYTS+L G+ ACKV YDLTQLISTFY K
Sbjct: 1   MAMSTETAMAIKSYQNQAEALVKNYLLADPFIPYTSVLGGIFACKVAYDLTQLISTFYIK 60

Query: 61  AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
            YNGLTKIQR+EWNNRG+ST+HA+FITA+SLY+VFWSDLFSD QHTG +T RSS  S  G
Sbjct: 61  TYNGLTKIQRIEWNNRGMSTIHAVFITAMSLYFVFWSDLFSDHQHTGIVTLRSSQFSIVG 120

Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVT 180
           LGVSVGYF ADLGMIF  YP+LGG EYV+HHSLS IAVAYSM SGE QLYTYM LISEVT
Sbjct: 121 LGVSVGYFFADLGMIFLYYPTLGGKEYVIHHSLSTIAVAYSMLSGEMQLYTYMCLISEVT 180

Query: 181 TPEINMRW 188
           TPEINMRW
Sbjct: 181 TPEINMRW 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115498|ref|XP_002332149.1| predicted protein [Populus trichocarpa] gi|222875199|gb|EEF12330.1| predicted protein [Populus trichocarpa]

 Score =  315 bits (807), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 147/188 (78%), Positives = 166/188 (88%)

Query: 1   MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFK 60
           MA+S +TV AIK+YQNQA+ LVKNY++ADPFIPYTS+L G+ ACKV YDLTQLISTFY K
Sbjct: 1   MAVSTETVMAIKTYQNQAEALVKNYLLADPFIPYTSVLGGIFACKVAYDLTQLISTFYIK 60

Query: 61  AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
           AYNGLTK+QR+EWNNRG+ST+HAIFITA+SLY+VFWSDLFSDQ+HTG +T RSS LS  G
Sbjct: 61  AYNGLTKLQRIEWNNRGMSTIHAIFITAMSLYFVFWSDLFSDQRHTGLVTLRSSQLSIVG 120

Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVT 180
           LGVS+GYF  D GMIF  YP+LGG EYV+HHSLS IAVAYSM SGE QLYTYM LISEVT
Sbjct: 121 LGVSIGYFFVDFGMIFLYYPTLGGKEYVIHHSLSTIAVAYSMLSGELQLYTYMCLISEVT 180

Query: 181 TPEINMRW 188
           TPEINMRW
Sbjct: 181 TPEINMRW 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487670|ref|XP_004157742.1| PREDICTED: transmembrane protein 56-B-like [Cucumis sativus]

 Score =  314 bits (804), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 146/188 (77%), Positives = 172/188 (91%)

Query: 1   MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFK 60
           MAMS +TV AIKSYQ+QA  LVKNY++AD F+P+TS+L G+LACK+VYDLTQL+S FYFK
Sbjct: 1   MAMSLKTVMAIKSYQSQADALVKNYLLADHFVPFTSVLGGMLACKLVYDLTQLVSNFYFK 60

Query: 61  AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
           +Y GLTKIQR+EWNNRG+ST HAI+I+ +SLY+VFWSDLFSDQ+H G +TF+SS LS F 
Sbjct: 61  SYVGLTKIQRVEWNNRGMSTFHAIYISIMSLYFVFWSDLFSDQRHPGLVTFQSSTLSTFI 120

Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVT 180
           LG+SVGYFLADLG+I WLYPSLGGMEYVVHH+LSG+AVAYS+FSGEGQLYTYMVLISE+T
Sbjct: 121 LGISVGYFLADLGLIVWLYPSLGGMEYVVHHTLSGLAVAYSVFSGEGQLYTYMVLISEIT 180

Query: 181 TPEINMRW 188
           TPEINMRW
Sbjct: 181 TPEINMRW 188

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085343|emb|CBI29075.3| unnamed protein product [Vitis vinifera]

 Score =  314 bits (804), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 148/179 (82%), Positives = 165/179 (92%)

Query: 10  AIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQ 69
           AIK+YQNQA+ LVK+Y++ADPFIPYTSIL+GL ACK+VYDLTQLISTFYFK+Y GLTKIQ
Sbjct: 2   AIKAYQNQAEQLVKDYLLADPFIPYTSILSGLFACKMVYDLTQLISTFYFKSYAGLTKIQ 61

Query: 70  RMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFL 129
           R+EWNNR +STVHA FI ALSLY+VFWSDLFSD +  G +TFRSS LS FGLGVSVGYFL
Sbjct: 62  RIEWNNRSMSTVHAFFIAALSLYFVFWSDLFSDHRLAGLVTFRSSPLSTFGLGVSVGYFL 121

Query: 130 ADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRW 188
           AD+GMIFWLYPSLGG+EY+VHHSLS IAVAY+M SGEGQLYTYMVLISEVTTPEINMRW
Sbjct: 122 ADIGMIFWLYPSLGGIEYIVHHSLSAIAVAYAMMSGEGQLYTYMVLISEVTTPEINMRW 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455419|ref|XP_004145450.1| PREDICTED: transmembrane protein 56-B-like [Cucumis sativus]

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 146/188 (77%), Positives = 172/188 (91%)

Query: 1   MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFK 60
           MAMS +TV AIKSYQ+QA  LVKNY++AD F+P+TS+L G+LACK+VYDLTQL+S FYFK
Sbjct: 1   MAMSLKTVMAIKSYQSQADALVKNYLLADHFVPFTSVLGGMLACKLVYDLTQLVSNFYFK 60

Query: 61  AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
           +Y GLTKIQR+EWNNRG+ST HAI+I+ +SLY+VFWSDLFSDQ+H G +TF+SS LS F 
Sbjct: 61  SYLGLTKIQRVEWNNRGMSTFHAIYISIMSLYFVFWSDLFSDQRHPGLVTFQSSTLSTFI 120

Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVT 180
           LG+SVGYFLADLG+I WLYPSLGGMEYVVHH+LSG+AVAYS+FSGEGQLYTYMVLISE+T
Sbjct: 121 LGISVGYFLADLGLIVWLYPSLGGMEYVVHHTLSGLAVAYSVFSGEGQLYTYMVLISEIT 180

Query: 181 TPEINMRW 188
           TPEINMRW
Sbjct: 181 TPEINMRW 188

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550713|ref|XP_002516405.1| conserved hypothetical protein [Ricinus communis] gi|223544440|gb|EEF45960.1| conserved hypothetical protein [Ricinus communis]

 Score =  309 bits (792), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 148/188 (78%), Positives = 166/188 (88%)

Query: 1   MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFK 60
           M +S++TV  IKSYQ+QAQVLVKNY++A PFIPYTS+L GL+A KV YDL+QLISTFY K
Sbjct: 1   MTVSKETVMTIKSYQSQAQVLVKNYLLASPFIPYTSVLGGLVASKVAYDLSQLISTFYIK 60

Query: 61  AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
           AY GLTK+QR+EWNNRG+S++HAIFITA SLY+VFWSDLFSDQ  T  +T RSS LS FG
Sbjct: 61  AYAGLTKMQRIEWNNRGMSSIHAIFITAASLYFVFWSDLFSDQLPTDLVTLRSSPLSIFG 120

Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVT 180
           LGVSVGYF ADLGMI W YPSLGGMEYV+HHSLS IAVAYSMFSGEGQLYTYM LISEVT
Sbjct: 121 LGVSVGYFFADLGMIIWFYPSLGGMEYVIHHSLSAIAVAYSMFSGEGQLYTYMCLISEVT 180

Query: 181 TPEINMRW 188
           TP+INMRW
Sbjct: 181 TPKINMRW 188

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851934|ref|XP_002893848.1| hypothetical protein ARALYDRAFT_473644 [Arabidopsis lyrata subsp. lyrata] gi|297339690|gb|EFH70107.1| hypothetical protein ARALYDRAFT_473644 [Arabidopsis lyrata subsp. lyrata]

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 140/185 (75%), Positives = 161/185 (87%)

Query: 4   SEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYN 63
           S QT+ AIKSY +QAQ LVKNY++ADPFIPYTS+L G+  CKVVYDL   IS  + K Y 
Sbjct: 5   SLQTIGAIKSYHHQAQHLVKNYLLADPFIPYTSVLTGIFLCKVVYDLCHFISNSHSKTYI 64

Query: 64  GLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGV 123
            LTKIQR+EWNNRGISTVHAIFI+ALSLY+VFWSDLFSD+ H   + FRSS LS+ GLG+
Sbjct: 65  ILTKIQRIEWNNRGISTVHAIFISALSLYFVFWSDLFSDRWHNDLVVFRSSRLSSLGLGI 124

Query: 124 SVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPE 183
           S+GYFLADLGMIFW YPSLGG+EY+VHHSLSG+AVAYS+FSGEGQLYTYMVLISE+TTPE
Sbjct: 125 SIGYFLADLGMIFWKYPSLGGIEYIVHHSLSGVAVAYSLFSGEGQLYTYMVLISEITTPE 184

Query: 184 INMRW 188
           IN+RW
Sbjct: 185 INLRW 189

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397885|ref|NP_564377.1| TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana] gi|79319015|ref|NP_001031121.1| TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana] gi|16604308|gb|AAL24160.1| At1g31300/T19E23_12 [Arabidopsis thaliana] gi|20466069|gb|AAM19956.1| At1g31300/T19E23_12 [Arabidopsis thaliana] gi|332193216|gb|AEE31337.1| TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana] gi|332193217|gb|AEE31338.1| TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana]

 Score =  296 bits (758), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 139/185 (75%), Positives = 161/185 (87%)

Query: 4   SEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYN 63
           S QT+ AIKSY +QAQ LVKNY++ADPFIPYTS+L G+  CKVVYDL   IS  + K Y 
Sbjct: 5   SLQTIGAIKSYHHQAQHLVKNYLLADPFIPYTSVLTGIFLCKVVYDLCHFISNSHSKTYI 64

Query: 64  GLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGV 123
            LTKIQR+EWNNRGISTVHAIFI+A+SLY+VFWSDLFSD+ H   + FRSS LS+ GLG+
Sbjct: 65  ILTKIQRIEWNNRGISTVHAIFISAMSLYFVFWSDLFSDRWHNDLVVFRSSRLSSLGLGI 124

Query: 124 SVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPE 183
           S+GYFLADLGMIFW YPSLGG+EY+VHHSLSG+AVAYS+FSGEGQLYTYMVLISE+TTPE
Sbjct: 125 SIGYFLADLGMIFWKYPSLGGIEYIVHHSLSGVAVAYSLFSGEGQLYTYMVLISEITTPE 184

Query: 184 INMRW 188
           IN+RW
Sbjct: 185 INLRW 189

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222423958|dbj|BAH19941.1| AT1G31300 [Arabidopsis thaliana]

 Score =  292 bits (747), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 138/185 (74%), Positives = 160/185 (86%)

Query: 4   SEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYN 63
           S QT+ AIKSY +QAQ LVKNY++ADPFIPYTS+L G+  CKVVYDL   IS  + K Y 
Sbjct: 5   SLQTIGAIKSYHHQAQHLVKNYLLADPFIPYTSVLTGIFLCKVVYDLCHFISNSHSKTYI 64

Query: 64  GLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGV 123
            LTKIQR+EWNNRGISTVHAIFI+A+SLY+VFWSDLFSD+ H   + FRSS LS+ GLG+
Sbjct: 65  ILTKIQRIEWNNRGISTVHAIFISAMSLYFVFWSDLFSDRWHNDLVVFRSSRLSSLGLGI 124

Query: 124 SVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPE 183
           S+GYFLADLGMIF  YPSLGG+EY+VHHSLSG+AVAYS+FSGEGQLYTYMVLISE+TTPE
Sbjct: 125 SIGYFLADLGMIFRKYPSLGGIEYIVHHSLSGVAVAYSLFSGEGQLYTYMVLISEITTPE 184

Query: 184 INMRW 188
           IN+RW
Sbjct: 185 INLRW 189

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
TAIR|locus:2197480	278	AT1G31300 "AT1G31300" [Arabido	0.984	0.665	0.751	1.5e-74
TAIR|locus:504955499	268	AT4G19645 "AT4G19645" [Arabido	0.946	0.664	0.720	2.4e-69
TAIR|locus:2122814	266	AT4G10360 "AT4G10360" [Arabido	0.813	0.575	0.503	2.9e-39
ZFIN|ZDB-GENE-090402-1	276	tmem56a "transmembrane protein	0.622	0.423	0.322	1.4e-13
ZFIN|ZDB-GENE-070912-350	263	si:dkey-10f21.4 "si:dkey-10f21	0.627	0.448	0.32	1.6e-13
MGI|MGI:1923195	276	Tmem56 "transmembrane protein	0.781	0.532	0.238	6.5e-12
ZFIN|ZDB-GENE-041010-90	264	tmem56b "transmembrane protein	0.712	0.507	0.280	6.6e-12
RGD|1563041	263	Tmem56 "transmembrane protein	0.792	0.566	0.256	8.5e-12
UNIPROTKB|F1NSV0	261	TMEM56 "Uncharacterized protei	0.702	0.505	0.255	1.4e-11
UNIPROTKB|E1B7S9	263	E1B7S9 "Uncharacterized protei	0.638	0.456	0.286	1.5e-11

TAIR|locus:2197480 AT1G31300 "AT1G31300" [Arabidopsis thaliana (taxid:3702)]

 Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
 Identities = 139/185 (75%), Positives = 161/185 (87%)

Query:     4 SEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYN 63
             S QT+ AIKSY +QAQ LVKNY++ADPFIPYTS+L G+  CKVVYDL   IS  + K Y 
Sbjct:     5 SLQTIGAIKSYHHQAQHLVKNYLLADPFIPYTSVLTGIFLCKVVYDLCHFISNSHSKTYI 64

Query:    64 GLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGV 123
              LTKIQR+EWNNRGISTVHAIFI+A+SLY+VFWSDLFSD+ H   + FRSS LS+ GLG+
Sbjct:    65 ILTKIQRIEWNNRGISTVHAIFISAMSLYFVFWSDLFSDRWHNDLVVFRSSRLSSLGLGI 124

Query:   124 SVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPE 183
             S+GYFLADLGMIFW YPSLGG+EY+VHHSLSG+AVAYS+FSGEGQLYTYMVLISE+TTPE
Sbjct:   125 SIGYFLADLGMIFWKYPSLGGIEYIVHHSLSGVAVAYSLFSGEGQLYTYMVLISEITTPE 184

Query:   184 INMRW 188
             IN+RW
Sbjct:   185 INLRW 189

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:504955499 AT4G19645 "AT4G19645" [Arabidopsis thaliana (taxid:3702)]

 Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
 Identities = 129/179 (72%), Positives = 157/179 (87%)

Query:    11 IKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQR 70
             IKSYQNQA+  V++Y++ADPF+PYTS+L G+  CK+VYDLT+L S+ + K+Y+ LTKI+R
Sbjct:     3 IKSYQNQAEYFVEHYLLADPFLPYTSVLVGICLCKLVYDLTELFSSIHVKSYSALTKIKR 62

Query:    71 MEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPIT-FRSSWLSNFGLGVSVGYFL 129
             +EWNNRGISTVHAIFI+ ++LY+ F+SDLFSDQ+    +T FR+S LS FGLGVSVGYFL
Sbjct:    63 IEWNNRGISTVHAIFISFMALYFAFFSDLFSDQRSLETLTVFRNSPLSTFGLGVSVGYFL 122

Query:   130 ADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRW 188
             ADLGMIFWLYPSLGG EY++HH LSG AVAYS+FSGE QLYTYMVLISEVTTPEIN+RW
Sbjct:   123 ADLGMIFWLYPSLGGSEYILHHCLSGTAVAYSLFSGEAQLYTYMVLISEVTTPEINLRW 181

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2122814 AT4G10360 "AT4G10360" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 77/153 (50%), Positives = 103/153 (67%)

Query:    36 SILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVF 95
             SI +G L CK+VYDLT+ IS   F  Y  L    RMEWNNRG ST HA+F +  S+Y++ 
Sbjct:    20 SICSGALMCKIVYDLTRFISPLLFSVYGKLDSKVRMEWNNRGFSTFHAVFTSVASIYFLV 79

Query:    96 WSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSG 155
              SD F +  H   +   ++ LS   +G+S+GYFLADL MIFW +P+LGG+EYV HH LS 
Sbjct:    80 ISDQFDENVHGDSVINSTTRLSESVMGISLGYFLADLAMIFWYFPTLGGIEYVFHHFLSM 139

Query:   156 IAVAYSMFSGEGQLYTYMVLISEVTTPEINMRW 188
              A+  S+ SG+ Q Y ++VL+SE TTP +N+RW
Sbjct:   140 FAIILSVTSGQSQFYIFLVLLSEATTPFVNLRW 172

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-090402-1 tmem56a "transmembrane protein 56a" [Danio rerio (taxid:7955)]

 Score = 177 (67.4 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 41/127 (32%), Positives = 71/127 (55%)

Query:    65 LTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVS 124
             LT  Q++EWN+R +ST+HA+ +    LY +F+ +  +     G  T     L    + ++
Sbjct:    54 LTHKQKIEWNSRTVSTLHALLVGLFCLYILFFDEAVNQDPVWGDPT-----LVKINVSIT 108

Query:   125 VGYFL-ADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQL--YTYMVLISEVTT 181
              GY + ADL +IF+ + ++G   +V+HH L+ +  AY    G+G L  +    L++E +T
Sbjct:   109 TGYLISADLLLIFYYWRAIGDKFFVIHH-LAAL-YAYYYVLGQGMLPYFANFRLLAEFST 166

Query:   182 PEINMRW 188
             P +N RW
Sbjct:   167 PCVNQRW 173

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-070912-350 si:dkey-10f21.4 "si:dkey-10f21.4" [Danio rerio (taxid:7955)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 40/125 (32%), Positives = 67/125 (53%)

Query:    65 LTKIQRMEWNNRGISTVHAIFITALSLY-YVFWSDLFSDQQHTGPITFRSSWLSNFGLGV 123
             L+  Q+ EWN+R +STVHA+ +    LY Y+F   +  D     P+ +  + L    + V
Sbjct:    41 LSPTQKTEWNSRAVSTVHALVVGLFCLYIYIFDESIQKD-----PV-WGDATLVKLNVAV 94

Query:   124 SVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPE 183
             + GY ++DL ++F  + S+G   +V+HH  +  A  Y +  G    +    L+SE +TP 
Sbjct:    95 TSGYLMSDLLLMFTSWESIGEKYFVIHHFAALYAYYYVLSQGILPYFANFRLLSEFSTPF 154

Query:   184 INMRW 188
             +N RW
Sbjct:   155 VNQRW 159

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

MGI|MGI:1923195 Tmem56 "transmembrane protein 56" [Mus musculus (taxid:10090)]

 Score = 163 (62.4 bits), Expect = 6.5e-12, P = 6.5e-12
 Identities = 38/159 (23%), Positives = 83/159 (52%)

Query:    36 SILAGLLACKVVYDLTQLISTFYFKA-----YNGLTKIQRMEWNNRGISTVHAIFITALS 90
             +++  + +  VV+ +     +++F A     YN L+  +++EWN+R +ST H++ +    
Sbjct:    20 AVICTVCSSFVVFQILFHFVSYWFSARVSSGYNSLSIDKKIEWNSRVVSTCHSLLVGIFG 79

Query:    91 LYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVH 150
             LY  F    F +   T P+    +++ N  +  + GY ++DL +I + +  +G   +++H
Sbjct:    80 LYLFF----FDEATITDPLWGDPTYV-NINIATASGYLISDLLIILFNWKVIGDKFFIIH 134

Query:   151 HSLSGIAVAYSMFSGEGQLY-TYMVLISEVTTPEINMRW 188
             H  +G+   Y + +     Y     L++E+++P +N RW
Sbjct:   135 HC-AGLTAYYFVLTTGALAYIANFRLLAELSSPFVNQRW 172

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-041010-90 tmem56b "transmembrane protein 56b" [Danio rerio (taxid:7955)]

 Score = 162 (62.1 bits), Expect = 6.6e-12, P = 6.6e-12
 Identities = 39/139 (28%), Positives = 71/139 (51%)

Query:    50 LTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPI 109
             ++ ++S+ + + Y  L   +  +WN+R +STVHA+ I  L   Y+ W D   D  +  P+
Sbjct:    23 VSPVLSSNFTQGYGKLPPNKLNDWNSRLVSTVHAL-IVGLFCLYILWYD---DAVNEDPV 78

Query:   110 TFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQL 169
              +    L    + ++ GY   DL ++   + ++G + +V HH  +  A  Y +  G    
Sbjct:    79 -WGDPNLVKLNVAITCGYLFYDLLLLACNWSTMGDVFFVCHHLAALYAYGYVLTRGVLPY 137

Query:   170 YTYMVLISEVTTPEINMRW 188
             +    LISE++TP +N RW
Sbjct:   138 FANFRLISELSTPFVNQRW 156

GO:0016021 "integral to membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

RGD|1563041 Tmem56 "transmembrane protein 56" [Rattus norvegicus (taxid:10116)]

 Score = 161 (61.7 bits), Expect = 8.5e-12, P = 8.5e-12
 Identities = 41/160 (25%), Positives = 78/160 (48%)

Query:    35 TSILAGLLACK-VVYDLTQLISTFYFKA-----YNGLTKIQRMEWNNRGISTVHAIFITA 88
             T+++ G + C  V + L     + +F A     YN L+  +++EWN+R +ST H++ +  
Sbjct:     5 TNVVIGTVCCSFVTFQLLFHFISCWFSARVSLGYNSLSTEKKIEWNSRVVSTCHSMLVGI 64

Query:    89 LSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYV 148
               LY  F    F +     P+    S L    +  + GY ++DL +I + +  +G   ++
Sbjct:    65 FGLYLFF----FDEATIADPLWGDPS-LVKINISTASGYLISDLLIILFNWKVIGDKFFI 119

Query:   149 VHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRW 188
             +HH    IA  + +  G         L++E+++P +N RW
Sbjct:   120 IHHCAGLIAYYFVLKIGVLAYIANFRLLAELSSPFVNQRW 159

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NSV0 TMEM56 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 159 (61.0 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 36/141 (25%), Positives = 75/141 (53%)

Query:    50 LTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPI 109
             L+  +ST     ++ L++ +++EWN+R +ST HA+ +    LY + + +  +     G  
Sbjct:    25 LSSWVSTRITPGFSNLSQKRKIEWNSRTVSTFHALVVGGFCLYILLYDEAVNADHLWGDP 84

Query:   110 TFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQL 169
             +     +    + ++ GY ++DL +I   + ++G   +V+HH L+ +   Y + S +G L
Sbjct:    85 S-----IVKLNIAITTGYLISDLLLIICYWKAIGDKFFVIHH-LAALYAYYFVLS-KGLL 137

Query:   170 YTY--MVLISEVTTPEINMRW 188
               +    L++E +TP +N RW
Sbjct:   138 AYFGNFRLLAEFSTPFVNQRW 158

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1B7S9 E1B7S9 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 159 (61.0 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 37/129 (28%), Positives = 70/129 (54%)

Query:    62 YNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGL 121
             +N L   +++EWN+R +ST H++ +  + LY +F   LF +     P+   +S L    +
Sbjct:    38 FNNLNFKKKIEWNSRVVSTCHSLVVGLVGLY-IF---LFDEAGIADPLWGDTS-LGKVNV 92

Query:   122 GVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQL-YT-YMVLISEV 179
              ++ GY ++DL ++ W +  +G   +V+HH  +    AY     +G L Y     L++E+
Sbjct:    93 AIASGYLVSDLLILIWYWKVIGDKYFVIHHCTA--LYAYHFVLNDGVLVYVGNFRLLAEL 150

Query:   180 TTPEINMRW 188
             ++P +N RW
Sbjct:   151 SSPFVNQRW 159

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00007163001 SubName- Full=Chromosome undetermined scaffold_185, whole genome shotgun sequence; (275 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	188
smart00724	205	smart00724, TLC, TRAM, LAG1 and CLN8 homology doma	4e-15
pfam03798	198	pfam03798, TRAM_LAG1_CLN8, TLC domain	4e-12

>gnl|CDD|214789 smart00724, TLC, TRAM, LAG1 and CLN8 homology domains

 Score = 70.0 bits (172), Expect = 4e-15
 Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 6/121 (4%)

Query: 70  RMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFL 129
             E +NR +S +H++     +LY   W    SD +   PI    S L+ F    S+GYF+
Sbjct: 3   FNESSNRLVSYLHSVIAGLYALYSEPW---LSDPKSLYPI-QGMSPLAKFYYLFSLGYFI 58

Query: 130 ADLGMIFWLYPSLGGM--EYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMR 187
            DL  +            E +VHH  + + ++ S      +L   ++L+ E++ P +++R
Sbjct: 59  HDLVALLLFQDLKRKDFKEMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLR 118

Query: 188 W 188
            
Sbjct: 119 K 119

Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains. Length = 205

>gnl|CDD|217735 pfam03798, TRAM_LAG1_CLN8, TLC domain

 Score = 61.5 bits (150), Expect = 4e-12
 Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 6/122 (4%)

Query: 72  EWNNRGISTVHAIFITALSLYYVFWSDLFSDQQ-----HTGPITFRSSWLSNFGLGVSVG 126
           ++N RG+S VH +    L LY +     F +       +   I   +S L  F   + +G
Sbjct: 1   KFNERGVSLVHYLVSGILGLYVLLSEPWFWNPTWLWYPYPDRILGGTSALVKFYYLIQLG 60

Query: 127 YFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINM 186
           YFL DL ++ +        E ++HH ++ + +++S F    ++   ++L+ E++ P +++
Sbjct: 61  YFLHDLLVLLFYEKRRKW-EMLLHHIITLLLISFSYFYNFTRVGLLVLLLHELSDPFLHL 119

Query: 187 RW 188
           R 
Sbjct: 120 RK 121

Length = 198

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	188
KOG4561	281	consensus Uncharacterized conserved protein, conta	99.87
PF03798	198	TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TL	99.86
KOG4474	253	consensus Uncharacterized conserved protein [Funct	99.84
smart00724	205	TLC TRAM, LAG1 and CLN8 homology domains. Protein	99.83
COG5058	395	LAG1 Protein transporter of the TRAM (translocatin	94.8
KOG1607	318	consensus Protein transporter of the TRAM (translo	88.79

>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]

Probab=99.87  E-value=1.9e-25  Score=186.50  Aligned_cols=169  Identities=35%  Similarity=0.497  Sum_probs=132.5

Q ss_pred             HHHHHHHHhhhhcccCCCcccHHHHHHHHHHHHHHHHHH---HHhHHHhhhhhcCCCcchhhhhh-hHhHHHHHHHHHHH
Q 029766           13 SYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLT---QLISTFYFKAYNGLTKIQRMEWN-NRGISTVHAIFITA   88 (188)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~l~~~~i~~s~~~~~~v~~ls---~~ls~~l~k~y~~l~~~~k~~w~-~r~vS~~HAii~~~   88 (188)
                      +.-.+-+..+.+...+.+..++......+++|..+|.+.   +..+....++|++++++.|++|| +|+||++|+++++ 
T Consensus         8 ~~~~~~s~~v~~~~~~~~~~~l~~~~~~~l~~~v~y~~~~~~~~~s~s~~~~~~~l~~k~~i~wn~~~~Vs~~hslv~~-   86 (281)
T KOG4561|consen    8 ARIGLTSELVKLSLGAIFFVLLTAHCHGILFYFVVYQLCNVIHNISVSLSHTYRSLDKKLKIEWNCVRVVSTVHSLVSS-   86 (281)
T ss_pred             CcccccchhhhhccchHHHHHHHHHHHHHHHHhhhhhhhceehheeehhhhhHhhhcCcEEEEEecCceeeeehHhhhc-
Confidence            334455666777777888888888899999999999988   77777777999999999999999 9999999999998 


Q ss_pred             HHHHHHHhcCCCCCCCCCCCcccCCChhHHHHHHHH--HHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHhcCC
Q 029766           89 LSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVS--VGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGE  166 (188)
Q Consensus        89 ~al~~l~~~~~~~~~~~~d~i~~~~s~~~~~~~~~s--~GYFl~Dl~~~~~~~~~~~~~~~l~HH~~~i~~~~~~l~~~~  166 (188)
                       ++|+++.++.+.    +|.. .+++........-+  .|||++|+..+.++++..+|.+|++||+++..........|.
T Consensus        87 -s~y~lf~~~~f~----yD~~-~~~~~~~~~~~~~~~g~gy~i~dl~~i~~~~~~~~~~~fviHh~~s~~~v~~~~~~~~  160 (281)
T KOG4561|consen   87 -SLYFLFGTPYFH----YDKA-TGYSVVWSKHRDTSVGIGYFIPDLTWIIVRYFVLGGIEFVIHHIASLVFVGCLLRRGV  160 (281)
T ss_pred             -ccceeecCcccc----hhhh-hccceeecceeeccccceEecccceeEEEEeeeecCeeEEeeHHHHhhhheeeEecCc
Confidence             888888776444    2322 22222222222233  459999998666678889999999999999444445555778


Q ss_pred             hhHHHHHHHHHHhhcccccccC
Q 029766          167 GQLYTYMVLISEVTTPEINMRW  188 (188)
Q Consensus       167 ~~~~~~~~Ll~ElSTPFlnlRW  188 (188)
                      +++++..+|++|+||||+|+||
T Consensus       161 g~y~~~~~L~~ElSTPFvnlrw  182 (281)
T KOG4561|consen  161 GQYYAGTFLMAELSTPFVNLRW  182 (281)
T ss_pred             cceeeeeeheeecCCceeeHHH
Confidence            9999999999999999999998

>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices

Probab=99.86  E-value=6.5e-22  Score=156.66  Aligned_cols=116  Identities=34%  Similarity=0.604  Sum_probs=96.7

Q ss_pred             hhhhHhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCChhHHHHHHHHHHHHHHHHHHHHHhccccCC-hhHHHH
Q 029766           72 EWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGG-MEYVVH  150 (188)
Q Consensus        72 ~w~~r~vS~~HAii~~~~al~~l~~~~~~~~~~~~d~i~~~~s~~~~~~~~~s~GYFl~Dl~~~~~~~~~~~~-~~~l~H  150 (188)
                      ||++|++|++|+++++.+|++++..++++.++.++++. .++++......++++|||++|++.+....+..+| +++++|
T Consensus         1 ~~~~~~~s~~h~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~~~d~~~~~~H   79 (198)
T PF03798_consen    1 KWNNRVVSFVHAIVSSIWGLYILLNDPELWSDWPDDPW-YYSSWLVKFYYAFSLGYFLYDLIVMLLYYRKRGDFWEMLLH   79 (198)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHhcCcHHhhhcccCcc-CCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHH
Confidence            69999999999999999999999987522222222332 4456677889999999999999999985544433 899999


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhhcccccccC
Q 029766          151 HSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRW  188 (188)
Q Consensus       151 H~~~i~~~~~~l~~~~~~~~~~~~Ll~ElSTPFlnlRW  188 (188)
                      |++++.++..+...+.+++++..+++.|+||||+|+||
T Consensus        80 H~~~l~~~~~~~~~~~~~~~~~~~ll~E~st~fl~~r~  117 (198)
T PF03798_consen   80 HVVTLVLFYFSYFYNFGRFGIVVFLLHEISTPFLNLRW  117 (198)
T ss_pred             HHHHHHHHHHhhHHHHhhHHHHHHHHHhcccHHHHHHH
Confidence            99999999999888889999999999999999999997

Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane

>KOG4474 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.84  E-value=3.2e-21  Score=158.16  Aligned_cols=119  Identities=24%  Similarity=0.280  Sum_probs=105.2

Q ss_pred             CCCcchhhhhhhHhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCChhHHHHHHHHHHHHHHHHHHHHHhccccC
Q 029766           64 GLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLG  143 (188)
Q Consensus        64 ~l~~~~k~~w~~r~vS~~HAii~~~~al~~l~~~~~~~~~~~~d~i~~~~s~~~~~~~~~s~GYFl~Dl~~~~~~~~~~~  143 (188)
                      .++..+|.+|.|+.||++||++++.++.+++..++    ..-.|++ ...++.+..+.++|+|||++|++++..+.....
T Consensus        37 ~~s~~~~~r~~n~~VSl~HS~Isg~~a~~~l~~~~----~~~~~~~-~~~s~~~~~l~~fS~gYfiyD~vDm~~~~~s~~  111 (253)
T KOG4474|consen   37 WFSVYQKKRFSNLTVSLLHSTISGLWALLSLLYDP----EMVDDPI-TYHSLSAYQLLLFSAGYFIYDLVDMLMNEQSEL  111 (253)
T ss_pred             eeccccchhhhhhHHHHHHHHHHHHHHHHHHHhCc----ccccCHH-HHHhhhhHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence            56777799999999999999999999999999853    3335666 667888899999999999999999997544456


Q ss_pred             ChhHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhccccccc
Q 029766          144 GMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMR  187 (188)
Q Consensus       144 ~~~~l~HH~~~i~~~~~~l~~~~~~~~~~~~Ll~ElSTPFlnlR  187 (188)
                      .+++++||.+++.++..++.++.+..++.+.+++|+|+||+|+|
T Consensus       112 s~e~LvHH~v~i~aF~~~lf~~~~~~~~~~~llmEv~SiFLH~R  155 (253)
T KOG4474|consen  112 SWEYLVHHVVCIIAFVLGLFYSKFLGYVVAALLMEVSSIFLHLR  155 (253)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            79999999999999999999999888999999999999999998

>smart00724 TLC TRAM, LAG1 and CLN8 homology domains

Probab=99.83  E-value=1.2e-20  Score=151.45  Aligned_cols=117  Identities=26%  Similarity=0.330  Sum_probs=98.4

Q ss_pred             chhhhhhhHhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCChhHHHHHHHHHHHHHHHHHHHHHhccccC--Ch
Q 029766           68 IQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLG--GM  145 (188)
Q Consensus        68 ~~k~~w~~r~vS~~HAii~~~~al~~l~~~~~~~~~~~~d~i~~~~s~~~~~~~~~s~GYFl~Dl~~~~~~~~~~~--~~  145 (188)
                      +|+.||++|++|.+||++++..+++....   ++++...++. .+.++..+...++++|||++|++.+..+.+...  ++
T Consensus         1 ~k~~e~~~~~vs~~hs~~~~~~~~~~~~~---~~~~~~~~p~-~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~~d~~   76 (205)
T smart00724        1 SKFNESSNRLVSYLHSVIAGLYALYSEPW---LSDPKSLYPI-QGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKRKDFK   76 (205)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhhccCCc---ccCCcccCCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH
Confidence            47899999999999999999999876652   1222233555 778999999999999999999999986444333  89


Q ss_pred             hHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcccccccC
Q 029766          146 EYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRW  188 (188)
Q Consensus       146 ~~l~HH~~~i~~~~~~l~~~~~~~~~~~~Ll~ElSTPFlnlRW  188 (188)
                      ++++||++++.++..+...+...+++...++.|+||||+|+||
T Consensus        77 ~~~~HHv~~~~~~~~~~~~~~~~~~~~~~~l~E~s~~fl~~~~  119 (205)
T smart00724       77 EMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLRK  119 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHH
Confidence            9999999999999888888888888888999999999999997

Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.

>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]

Probab=94.80  E-value=0.014  Score=50.23  Aligned_cols=118  Identities=13%  Similarity=0.077  Sum_probs=72.0

Q ss_pred             CcchhhhhhhHhHHHHHHHHHHHHHHHHHHhcCCCCCC---C-CCCCcccCCChhHHHHHHHHHHHHHHHHHHHHH--hc
Q 029766           66 TKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQ---Q-HTGPITFRSSWLSNFGLGVSVGYFLADLGMIFW--LY  139 (188)
Q Consensus        66 ~~~~k~~w~~r~vS~~HAii~~~~al~~l~~~~~~~~~---~-~~d~i~~~~s~~~~~~~~~s~GYFl~Dl~~~~~--~~  139 (188)
                      ++++..+.+...-+.+--.++++.|+|++-.++.|--+   . ..-|. ++.++.-...-.+=.||-+....+..+  -.
T Consensus       150 s~kkikRf~eq~y~~fyy~v~g~~Glyvmrss~~w~fntk~l~etyp~-~~~p~lfk~fYliqaafw~qQa~ilvLqlEk  228 (395)
T COG5058         150 SEKKIKRFCEQMYAIFYYGVSGPFGLYVMRSSPLWFFNTKALYETYPV-FYNPFLFKAFYLIQAAFWAQQACILVLQLEK  228 (395)
T ss_pred             CHHHHHHHHHHHHHHHHhhccccceEEEEecCcchhhhhHHHHHhCcc-ccCcHHHHHHHHHHHHHHHHHHhhheeeecc
Confidence            44445789999999999999999999998876544411   1 11233 455555555566777888877544443  23


Q ss_pred             cccCChhHHHHHHHHHHHHHHHHhcCChhHHHH-HHHHHHhhccccc
Q 029766          140 PSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTY-MVLISEVTTPEIN  185 (188)
Q Consensus       140 ~~~~~~~~l~HH~~~i~~~~~~l~~~~~~~~~~-~~Ll~ElSTPFln  185 (188)
                      |...-++++.||++.+.-...+.... .--.++ ....+.+|-|||.
T Consensus       229 prkD~~elv~HHIVTllLI~lSY~fh-ftr~GlAI~itmDvSD~~Ls  274 (395)
T COG5058         229 PRKDFKELVFHHIVTLLLIWLSYVFH-FTRMGLAIYITMDVSDFFLS  274 (395)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHH-HHhccceEEEEEeccHHHHH
Confidence            44556889999999876444443211 111222 2335566666553

>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.79  E-value=4.3  Score=35.21  Aligned_cols=101  Identities=16%  Similarity=0.117  Sum_probs=64.1

Q ss_pred             hhhcCCCcchhhhhhhHhHHHHHHHHHHHHHHHHHHhcCCCCCCC---CCCCcccCCChhHHHHHHHHHHHHHHHHHHHH
Q 029766           60 KAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQ---HTGPITFRSSWLSNFGLGVSVGYFLADLGMIF  136 (188)
Q Consensus        60 k~y~~l~~~~k~~w~~r~vS~~HAii~~~~al~~l~~~~~~~~~~---~~d~i~~~~s~~~~~~~~~s~GYFl~Dl~~~~  136 (188)
                      ..++.-+++.+.......=.++-=..+.+.|+|++..++-+.+..   .+-|. ....+.....-.+=+||=+.-+..+.
T Consensus        76 ~~~~~~~~~~~~k~~Es~Wk~~yy~~s~~~glyV~~~~~wf~~~k~~w~~yP~-~~~~~~~k~~Y~~e~gfY~~~l~al~  154 (318)
T KOG1607|consen   76 LRLNVTADRRKKKFCESAWKFLYYLVSWIFGLYVMYHEPWFYDTKSFWEGYPD-QTLPPSFKAYYLLEAGFYIQLLFALF  154 (318)
T ss_pred             HhcCCcCchhhhhhHHHHHHHHHHHHHHHHhhhheecchhhcCHHHHHhcCCC-CCCCHHHHHHHHHhhHHHHHHHHHHH
Confidence            445555555557778888888888889999999888743222210   11111 23344555556677888777777776


Q ss_pred             HhccccCChhHHHHHHHHHHHHHHH
Q 029766          137 WLYPSLGGMEYVVHHSLSGIAVAYS  161 (188)
Q Consensus       137 ~~~~~~~~~~~l~HH~~~i~~~~~~  161 (188)
                      .......-+++.+||+++++-...+
T Consensus       155 ~d~~rkDf~~m~vHHvvTl~Li~lS  179 (318)
T KOG1607|consen  155 LDEKRKDFWEMVVHHVVTLILISLS  179 (318)
T ss_pred             hhccccHHHHHHHHHHHHHHHHHHH
Confidence            5444445578999999987644444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00