Citrus Sinensis ID: 029809

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
Protein Sequence
MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIRPTAPAATTTRTGPKPNNFDKDEGSPPAQSNPSSDGVMTGKRGRGRSPAMSFYSDTTDFQSSKRGGDHHQDKKLLNLFV
Secondary Structure (PSIPRED)
ccccHHHHcccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccccccEcccEcccccccccccHEEEEEEHccHHHHHHHHHHccHHHcHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHcccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccHHHHccc
Coil and Loop (DISEMBL)
mscngcrvlrkgcsetciLRSClqwidtpeaqgNATLFLAKFFGRSDLLSFIaavpqhqrpaLFQSLLFEAcgrtvnpvdgavgllssgnwHVCRAAVETVLsggtlirptapaatttrtgpkpnnfdkdegsppaqsnpssdgvmtgkrgrgrspamsfysdttdfqsskrggdhhqdkkLLNLFV
Flexible Loop (DISEMBL)
mscngcrvlrkgcSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETvlsggtlirptapaatttrtgpkpnnfdkdegsppaqsnpssdgvmtgKRGRGRSPAMSFYSDTtdfqsskrggdhhqdkkllnlfv
Low Complexity Region (SEG)
MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIrptapaatttrtGPKPNNFDKDEGSPPAQSNPSSDGVMTGKRGRGRSPAMSFYSDTTDFQSSKRGGDHHQDKKLLNLFV
Disordered region (IsUnstruct)
***NGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIR******************************************************************************
Disordered Region (DISOPRED)
MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTL*************************************************************************KLLNLFV
Disordered Region (DISEMBL)
MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIRPTAPAATTTRTGPKPNNF***************************SPAMSFYSDTT************QDKKLLNLFV
Disordered Region (DISPRO)
*SCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIRPTAPAATTTRTGPKPNN*************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIRPTAPAATTTRTGPKPNNFDKDEGSPPAQSNPSSDGVMTGKRGRGRSPAMSFYSDTTDFQSSKRGGDHHQDKKLLNLFV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	187	2.2.26 [Sep-21-2011]
Q9SZE8	240	LOB domain-containing pro	yes	no	0.593	0.462	0.776	4e-47
Q9SN23	247	LOB domain-containing pro	no	no	0.572	0.433	0.785	1e-46
Q9FN11	250	LOB domain-containing pro	no	no	0.582	0.436	0.754	6e-46
Q9M886	263	LOB domain-containing pro	no	no	0.957	0.680	0.462	1e-39
Q9ZW96	233	LOB domain-containing pro	no	no	0.668	0.536	0.603	1e-39
Q9CA30	233	LOB domain-containing pro	no	no	0.636	0.510	0.588	2e-38
O64836	311	LOB domain-containing pro	no	no	0.588	0.353	0.243	6e-07
Q8LBW3	193	LOB domain-containing pro	no	no	0.673	0.652	0.244	1e-06
Q9FKZ3	313	LOB domain-containing pro	no	no	0.427	0.255	0.317	3e-06
Q9SHE9	172	LOB domain-containing pro	no	no	0.433	0.470	0.313	5e-06

>sp|Q9SZE8|LBD39_ARATH LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39 PE=2 SV=1

 Score =  187 bits (475), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 87/112 (77%), Positives = 103/112 (91%), Gaps = 1/112 (0%)

Query: 1   MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60
           MSCNGCRVLRKGCSETCILR CLQWI++ E+QG+AT+F+AKFFGR+ L+SFI++VP+ QR
Sbjct: 1   MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQR 60

Query: 61  PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIRPTA 112
           PALFQSLLFEACGRTVNPV+GAVG+L + NWHVC+AAVETVL GGTL RP +
Sbjct: 61  PALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTL-RPIS 111

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN23|LBD38_ARATH LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1

 Score =  185 bits (470), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 84/107 (78%), Positives = 100/107 (93%)

Query: 1   MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60
           MSCNGCRVLRKGCSE CILR C+QWI++PEAQG+AT+F+AKFFGR+ L+SFI+AVP+ Q 
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60

Query: 61  PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTL 107
           PALFQSLL+EACGRTVNPV+GAVGLL +GNW+VC+AAVETVL GG+L
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSL 107

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN11|LBD37_ARATH LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1

 Score =  183 bits (465), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 83/110 (75%), Positives = 101/110 (91%), Gaps = 1/110 (0%)

Query: 1   MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60
           MSCNGCRVLRKGCSE CILR C+QWI+T +AQG+AT+F+AKFFGR+ L+SFI+AVP  QR
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60

Query: 61  PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIRP 110
           PALFQSLL+EACGRTVNPV+GA+G+L +GNW++C+AAVETVL GG+L RP
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSL-RP 109

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M886|LBD41_ARATH LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1

 Score =  162 bits (411), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 86/186 (46%), Positives = 114/186 (61%), Gaps = 7/186 (3%)

Query: 1   MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60
           MSCNGCRVLRKGCSE C +R CL WI +PEAQ NAT+FLAKF+GR+ L++ I A P H R
Sbjct: 3   MSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLR 62

Query: 61  PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIRPTAPAATTTRT 120
           P +F+SLL EACGR VNP+ G+VGLL SGNW +C+ AVE V+ G   ++  A  A T   
Sbjct: 63  PGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEP-VKEIATDAATIGQ 121

Query: 121 GPKPNNFD-----KDEGSPPAQSNPSSDGVMTGKRG-RGRSPAMSFYSDTTDFQSSKRGG 174
           GP    +D     KD+ S  A +  +   +   +R  R  + A+   S+    ++S    
Sbjct: 122 GPPLKIYDIRHISKDDNSAAAATGSTDLKLAKTRRAKRVSTVAIQAESEGKSDEASHDSS 181

Query: 175 DHHQDK 180
             HQ +
Sbjct: 182 LSHQSE 187

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZW96|LBD40_ARATH LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40 PE=2 SV=1

 Score =  162 bits (411), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 76/126 (60%), Positives = 94/126 (74%), Gaps = 1/126 (0%)

Query: 1   MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60
           MSCNGCRVLRKGCSE C +R CLQWI + E+Q NAT+FLAKF+GR+ L++ +   P H R
Sbjct: 3   MSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLR 62

Query: 61  PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIRPTAPAATTTRT 120
           PA+F+SLL+EACGR VNP+ G+VGLL SGNWH+C+AAVE V+ G   + P A  A  T  
Sbjct: 63  PAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSP-VTPIACDAAVTGQ 121

Query: 121 GPKPNN 126
            P  NN
Sbjct: 122 APPFNN 127

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CA30|LBD42_ARATH LOB domain-containing protein 42 OS=Arabidopsis thaliana GN=LBD42 PE=2 SV=1

 Score =  158 bits (399), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 70/119 (58%), Positives = 93/119 (78%)

Query: 1   MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60
           +SCNGCRVLRKGC++ C +R CLQWI + ++Q NATLFLAKF+GR+ LL+ I + P H R
Sbjct: 3   ISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDHLR 62

Query: 61  PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIRPTAPAATTTR 119
           PA+F+SLL+EACGR VNPVDG+VGL+ SGNW  C+AAV+ VL+G  +     P+A+ + 
Sbjct: 63  PAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSASASH 121

Arabidopsis thaliana (taxid: 3702)

>sp|O64836|LBD10_ARATH LOB domain-containing protein 10 OS=Arabidopsis thaliana GN=LBD10 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 5/115 (4%)

Query: 3   CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPA 62
           C  C++LR+ C++ C+          P       +F+ + FG S++   +  +P  QR  
Sbjct: 6   CAACKLLRRKCTQECVFAPYF-----PPTNPQKFIFVHRVFGASNVTKILNDLPPDQRED 60

Query: 63  LFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIRPTAPAATT 117
              SL +EA  R  +P+ G VGL+S    ++ +   + + +   L+    P A  
Sbjct: 61  TVNSLFYEAEARIRDPIYGCVGLISFLQQYLKKIQQDLLTAKEELVGYLGPDAVI 115

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBW3|LBD12_ARATH LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2

 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 5/131 (3%)

Query: 3   CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPA 62
           C  C++LR+ C++ CI          P    +    + K FG S++   +  +P HQR  
Sbjct: 9   CASCKLLRRRCAKDCIFAPYF-----PPDDPHKFAIVHKVFGASNVSKMLQELPVHQRAD 63

Query: 63  LFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIRPTAPAATTTRTGP 122
              SL+FEA  R  +PV G VG +S     V +  ++  ++   ++        T ++  
Sbjct: 64  AVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSHH 123

Query: 123 KPNNFDKDEGS 133
           +    D+D  +
Sbjct: 124 QVLELDQDHKA 134

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ3|LBD36_ARATH LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 3  CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPA 62
          C  C+ LR+ C++ C+          P  Q     F+ K FG S++   +  +  +QR  
Sbjct: 8  CAACKFLRRKCTQECVFAPYF-----PPDQPQKFAFVHKVFGASNVAKLLNELASNQRED 62

Query: 63 LFQSLLFEACGRTVNPVDGAVGLLS 87
             SL +EA  R  +PV G VGL+S
Sbjct: 63 AVNSLFYEAEARLRDPVYGCVGLIS 87

Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHE9|LBD4_ARATH LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 5/86 (5%)

Query: 3  CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPA 62
          C  C++LR+ C++ C+        D P+   N    + + FG S++   +  +P HQR  
Sbjct: 14 CAACKLLRRRCAQDCVFSPYFP-ADEPQKFAN----VHRVFGASNVNKMLQELPIHQRGD 68

Query: 63 LFQSLLFEACGRTVNPVDGAVGLLSS 88
             S+++EA  R  +PV G VG +SS
Sbjct: 69 AVSSMVYEANARVRDPVYGCVGAISS 94

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
255538088	212	conserved hypothetical protein [Ricinus	0.957	0.844	0.563	4e-51
225458812	222	PREDICTED: LOB domain-containing protein	0.989	0.833	0.522	4e-51
224127284	208	predicted protein [Populus trichocarpa]	0.967	0.870	0.565	7e-51
449447289	205	PREDICTED: LOB domain-containing protein	0.983	0.897	0.562	2e-50
356541649	240	PREDICTED: LOB domain-containing protein	0.909	0.708	0.580	7e-49
356496973	243	PREDICTED: LOB domain-containing protein	0.695	0.534	0.729	2e-48
255568563	246	LOB domain-containing protein, putative	0.572	0.434	0.841	2e-48
357482655	231	LOB domain-containing protein [Medicago	0.572	0.463	0.841	6e-48
337733632	239	hypothetical protein [Citrus trifoliata]	0.700	0.548	0.696	6e-48
449448242	233	PREDICTED: LOB domain-containing protein	1.0	0.802	0.493	1e-47

>gi|255538088|ref|XP_002510109.1| conserved hypothetical protein [Ricinus communis] gi|223550810|gb|EEF52296.1| conserved hypothetical protein [Ricinus communis]

 Score =  206 bits (523), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 124/220 (56%), Positives = 144/220 (65%), Gaps = 41/220 (18%)

Query: 1   MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60
           MSCNGCRVLRKGCSETCILRSCL WI  PEAQG+ATLFLAKFFGRSDL+S I+AVP+ QR
Sbjct: 1   MSCNGCRVLRKGCSETCILRSCLHWITPPEAQGHATLFLAKFFGRSDLMSLISAVPESQR 60

Query: 61  PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIRP---------- 110
           PALFQSLLFEACGRTVNPV+GAVGLL SGNWHVC+ AVETVLSGG ++RP          
Sbjct: 61  PALFQSLLFEACGRTVNPVNGAVGLLWSGNWHVCQVAVETVLSGG-ILRPLPGLLSGVLA 119

Query: 111 ----------------TAPAATTTRTGPKPN-NFDKDEGSPPAQSNPSSDGVMTG--KRG 151
                                T  ++ P  N N + ++ S  +  N S    +TG  +  
Sbjct: 120 QNHDESSDRFSAEGYRLRNMMTWAQSKPYINTNMNMNQAS--SDLNLSLTPKLTGSCRVK 177

Query: 152 RGRSPAMSF----YSDTTDFQSSKRGGDHHQDKKLLNLFV 187
           RGR  A+SF     S+ T F+S+  GGD    KKLLNLFV
Sbjct: 178 RGRDHAVSFCTEESSEMTTFESN--GGDR---KKLLNLFV 212

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458812|ref|XP_002285250.1| PREDICTED: LOB domain-containing protein 38 [Vitis vinifera] gi|302142212|emb|CBI19415.3| unnamed protein product [Vitis vinifera]

 Score =  206 bits (523), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 117/224 (52%), Positives = 146/224 (65%), Gaps = 39/224 (17%)

Query: 1   MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60
           MSCNGCRVLRKGCS++CILR+CLQWI+ PEAQG ATLF++KFFGRSDL+SFI+AVP+++R
Sbjct: 1   MSCNGCRVLRKGCSDSCILRTCLQWIENPEAQGYATLFVSKFFGRSDLMSFISAVPENKR 60

Query: 61  PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTL----------IRP 110
           PALFQSLLFEACGRTVNPV+GAVGLL +GNWHVC+AAV+TVL+GGTL          I+P
Sbjct: 61  PALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVDTVLAGGTLRPIPGILAGPIKP 120

Query: 111 TAPAATTT-----------RTGPKPNNFDKDEGSPPA---QSNPSSDGVMTGKR------ 150
               A+ T            +  KP  F +D  S  A   ++ P   G+    R      
Sbjct: 121 GFDEASATFCTDAWKLRDAYSLSKP--FMRDNASEEAKRIETQPPHLGISATARFSNKIN 178

Query: 151 -GRGRSPAMSFYSDTTDFQSSKRGGDHH------QDKKLLNLFV 187
            GRG+    SF S+ +    S  G D        Q++KLLNLF+
Sbjct: 179 AGRGKRSGTSFCSEGSSGTMSYDGSDDDRNMSGCQERKLLNLFI 222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127284|ref|XP_002320036.1| predicted protein [Populus trichocarpa] gi|222860809|gb|EEE98351.1| predicted protein [Populus trichocarpa]

 Score =  205 bits (521), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 121/214 (56%), Positives = 140/214 (65%), Gaps = 33/214 (15%)

Query: 1   MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60
           MSCNGCRVLRKGCSETC+LRSCL WI TPEAQGNATLFLAKFFGRSDL+S I+AVP+ QR
Sbjct: 1   MSCNGCRVLRKGCSETCVLRSCLHWIPTPEAQGNATLFLAKFFGRSDLISLISAVPESQR 60

Query: 61  PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIRP---------- 110
           P LFQSLLFEACGRTVNPV+GAVGLL SGNWHVC+AAVE+VL+G TL RP          
Sbjct: 61  PVLFQSLLFEACGRTVNPVNGAVGLLWSGNWHVCQAAVESVLAGETL-RPLPGILTGVLA 119

Query: 111 -----------TAPAATTTRTGPKPNNFDKDEGSPPAQSNPSS--DGVMTGKRGRGRSPA 157
                       A  A  + T  +   FDK+  +     +  +       G R +    A
Sbjct: 120 PNCDESSDSFSAAAYAVHSMTWNQSKPFDKENNNQVVSDHHVNLCLARGRGGRDKRGRDA 179

Query: 158 MSFY----SDTTDFQSSKRGGDHHQDKKLLNLFV 187
           +SFY    S+TT F+SS  G D +   KLLNLFV
Sbjct: 180 VSFYTGGESETTSFESS--GADKN---KLLNLFV 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447289|ref|XP_004141401.1| PREDICTED: LOB domain-containing protein 39-like [Cucumis sativus]

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 117/208 (56%), Positives = 135/208 (64%), Gaps = 24/208 (11%)

Query: 1   MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60
           MSCNGCRVLRKGCSE C+LRS L WID+PEAQGNATLFLAKFFGRSDLLSFI+AVP HQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60

Query: 61  PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIRPTAPAATTTRT 120
           PALFQSLLFEACGRTVNPV GAVGLLS+GNWHVC+AA +T+L+GG L RP          
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVL-RPI--PGIEISA 117

Query: 121 GPKPN------NFDKDEGSPPAQSN----PSSDG------VMTGKRGRGRSPA---MSFY 161
            P PN       F+ D  +     N    PS+         ++  R +   P     S  
Sbjct: 118 NPTPNLDDSSLTFNTDVWTTTTVHNLQFYPSTPSDFRCLPDLSLGRAKNHHPLENRRSLD 177

Query: 162 SDTTDFQSSKRG--GDHHQDKKLLNLFV 187
           S+ +   S   G  GD  ++ KLLNLFV
Sbjct: 178 SEESVMTSFGSGDLGDQRKETKLLNLFV 205

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541649|ref|XP_003539286.1| PREDICTED: LOB domain-containing protein 38-like [Glycine max]

 Score =  198 bits (504), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 108/186 (58%), Positives = 127/186 (68%), Gaps = 16/186 (8%)

Query: 1   MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60
           MSCNGCRVLRKGCSE+CILR CLQWIDTPEAQG+AT+F+AKFFGR+DL+SFI+ VP+ QR
Sbjct: 1   MSCNGCRVLRKGCSESCILRPCLQWIDTPEAQGHATVFVAKFFGRADLMSFISNVPEPQR 60

Query: 61  PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIRPTAPAATTTRT 120
           PALFQSLLFEACGRTVNPV+GAVGLL +GNWHVC+AAVETVL GGT+             
Sbjct: 61  PALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTV------------- 107

Query: 121 GPKPNNFDKDEGSPPAQSNPSSDGVMTGK-RGRGRSPAMSFYSDTTDFQSSKRGGDHHQD 179
            P P  F  D  +P        +   T K R R  +P   F    +D  SS  GG   + 
Sbjct: 108 RPMPELFGLDAPTPTTDDASEGEVTCTDKWRVRDPNPNFRFPGSRSDKGSS--GGKRKRF 165

Query: 180 KKLLNL 185
           ++L  L
Sbjct: 166 EELAKL 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496973|ref|XP_003517339.1| PREDICTED: LOB domain-containing protein 38-like [Glycine max]

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 97/133 (72%), Positives = 109/133 (81%), Gaps = 3/133 (2%)

Query: 1   MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60
           MSCNGCRVLRKGCSE+CILR CLQWIDTPEAQG+AT+F+AKFFGR+DL+SFI+ VP+ QR
Sbjct: 1   MSCNGCRVLRKGCSESCILRPCLQWIDTPEAQGHATVFVAKFFGRADLMSFISNVPEPQR 60

Query: 61  PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIRPTAPAATTTRT 120
           PALFQSLLFEACGRTVNPV+GAVGLL +GNWHVC+AAVETVL GGT +RP          
Sbjct: 61  PALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGT-VRPM--PELLGLD 117

Query: 121 GPKPNNFDKDEGS 133
            P P   D  EG 
Sbjct: 118 APTPTADDASEGE 130

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568563|ref|XP_002525255.1| LOB domain-containing protein, putative [Ricinus communis] gi|223535413|gb|EEF37083.1| LOB domain-containing protein, putative [Ricinus communis]

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/107 (84%), Positives = 102/107 (95%)

Query: 1   MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60
           MSCNGCRVLRKGCSETCILR CLQWI++PEAQG+AT+F+AKFFGR+ L+SFI+AVP+ QR
Sbjct: 1   MSCNGCRVLRKGCSETCILRPCLQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPETQR 60

Query: 61  PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTL 107
           PALFQSLLFEACGRTVNPV+GAVGLL +GNWHVC+AAVETVL GGTL
Sbjct: 61  PALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTL 107

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482655|ref|XP_003611614.1| LOB domain-containing protein [Medicago truncatula] gi|355512949|gb|AES94572.1| LOB domain-containing protein [Medicago truncatula] gi|388509520|gb|AFK42826.1| unknown [Medicago truncatula]

 Score =  195 bits (496), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 90/107 (84%), Positives = 101/107 (94%)

Query: 1   MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60
           MSCNGCRVLRKGCSE+CILR C+QWIDTPEAQG+AT+F+AKFFGR+DL+SFI+ VP  QR
Sbjct: 1   MSCNGCRVLRKGCSESCILRPCIQWIDTPEAQGHATVFVAKFFGRADLMSFISNVPLPQR 60

Query: 61  PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTL 107
           PALFQSLLFEACGRTVNPV+GAVGLL +GNWHVC+AAVETVL GGTL
Sbjct: 61  PALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTL 107

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|337733632|gb|AEI72265.1| hypothetical protein [Citrus trifoliata]

 Score =  195 bits (496), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 92/132 (69%), Positives = 111/132 (84%), Gaps = 1/132 (0%)

Query: 1   MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60
           MSCNGCRVLRKGCSE+CILR CLQWI++PE+QG+AT+F+AKFFGR+ L+SFI+AVP+ QR
Sbjct: 1   MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQR 60

Query: 61  PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIRPTAPAATTTRT 120
           PALFQSLL+EACGRTVNPV+GAVGLL +GNWHVC+AAVETVL GGTL RP     ++   
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTL-RPVLELLSSCGG 119

Query: 121 GPKPNNFDKDEG 132
            P P + +  E 
Sbjct: 120 SPTPTSDELSEA 131

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448242|ref|XP_004141875.1| PREDICTED: LOB domain-containing protein 38-like [Cucumis sativus] gi|449519096|ref|XP_004166571.1| PREDICTED: LOB domain-containing protein 38-like [Cucumis sativus]

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 115/233 (49%), Positives = 139/233 (59%), Gaps = 46/233 (19%)

Query: 1   MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60
           MSCNGCRVLRKGCSE+CILR CLQWIDT EAQG+AT+F+AKFFGR+ L+SFI+AVP+ QR
Sbjct: 1   MSCNGCRVLRKGCSESCILRPCLQWIDTSEAQGHATVFVAKFFGRAGLMSFISAVPESQR 60

Query: 61  PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLI---------RPT 111
           P+LFQSLLFEACGRTVNPV+GAVGLL +GNWHVC+AAV+TVL GGTL           P 
Sbjct: 61  PSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVDTVLRGGTLRPINDFLAAGSPN 120

Query: 112 APAATTTRTGPKPNNFDKDEGSPPAQSNPSSDGVMTGKRGRGR----------------- 154
             +  T+ T     +  K   S P     +S   ++ KR R                   
Sbjct: 121 LASDDTSETEVGCTDMWKIRDSYPNSRFSNSRSRLSPKRKRSEEASTKHQLNDLDLRLTP 180

Query: 155 -----------SPAM-SFYSDTTDFQSSKRGGDHHQ--------DKKLLNLFV 187
                      +P+M S  S+TT    S  G +HH          +KLLNLFV
Sbjct: 181 TFPAKSTLRAATPSMNSEESETTTCFESGLGDNHHHHYPEEGVAQRKLLNLFV 233

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
TAIR|locus:2120071	240	LBD39 "AT4G37540" [Arabidopsis	0.572	0.445	0.794	1.2e-47
TAIR|locus:2158247	250	LBD37 "LOB domain-containing p	0.572	0.428	0.757	6e-46
TAIR|locus:2083063	247	LBD38 "LOB domain-containing p	0.572	0.433	0.785	5e-44
TAIR|locus:2019698	233	LBD40 "AT1G67100" [Arabidopsis	0.556	0.446	0.663	1e-36
TAIR|locus:2076829	263	LBD41 "LOB domain-containing p	0.957	0.680	0.446	5.7e-36
TAIR|locus:2201267	233	LBD42 "AT1G68510" [Arabidopsis	0.556	0.446	0.653	7.2e-36
TAIR|locus:2197500	172	LBD4 "LOB domain-containing pr	0.433	0.470	0.313	4.6e-07
TAIR|locus:2060842	193	ASL5 [Arabidopsis thaliana (ta	0.427	0.414	0.329	2.2e-06
TAIR|locus:2026611	190	LBD1 "LOB domain-containing pr	0.422	0.415	0.297	9.3e-06
TAIR|locus:2126881	228	JLO "JAGGED LATERAL ORGANS" [A	0.497	0.407	0.339	9.7e-06

TAIR|locus:2120071 LBD39 "AT4G37540" [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
 Identities = 85/107 (79%), Positives = 100/107 (93%)

Query:     1 MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60
             MSCNGCRVLRKGCSETCILR CLQWI++ E+QG+AT+F+AKFFGR+ L+SFI++VP+ QR
Sbjct:     1 MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQR 60

Query:    61 PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTL 107
             PALFQSLLFEACGRTVNPV+GAVG+L + NWHVC+AAVETVL GGTL
Sbjct:    61 PALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTL 107

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016126 "sterol biosynthetic process" evidence=RCA

TAIR|locus:2158247 LBD37 "LOB domain-containing protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
 Identities = 81/107 (75%), Positives = 99/107 (92%)

Query:     1 MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60
             MSCNGCRVLRKGCSE CILR C+QWI+T +AQG+AT+F+AKFFGR+ L+SFI+AVP  QR
Sbjct:     1 MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60

Query:    61 PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTL 107
             PALFQSLL+EACGRTVNPV+GA+G+L +GNW++C+AAVETVL GG+L
Sbjct:    61 PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSL 107

GO:0005634 "nucleus" evidence=ISM

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0060776 "simple leaf morphogenesis" evidence=IMP

TAIR|locus:2083063 LBD38 "LOB domain-containing protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 84/107 (78%), Positives = 100/107 (93%)

Query:     1 MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60
             MSCNGCRVLRKGCSE CILR C+QWI++PEAQG+AT+F+AKFFGR+ L+SFI+AVP+ Q 
Sbjct:     1 MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60

Query:    61 PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTL 107
             PALFQSLL+EACGRTVNPV+GAVGLL +GNW+VC+AAVETVL GG+L
Sbjct:    61 PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSL 107

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2019698 LBD40 "AT1G67100" [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 69/104 (66%), Positives = 86/104 (82%)

Query:     1 MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60
             MSCNGCRVLRKGCSE C +R CLQWI + E+Q NAT+FLAKF+GR+ L++ +   P H R
Sbjct:     3 MSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLR 62

Query:    61 PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSG 104
             PA+F+SLL+EACGR VNP+ G+VGLL SGNWH+C+AAVE V+ G
Sbjct:    63 PAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRG 106

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

TAIR|locus:2076829 LBD41 "LOB domain-containing protein 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 83/186 (44%), Positives = 110/186 (59%)

Query:     1 MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60
             MSCNGCRVLRKGCSE C +R CL WI +PEAQ NAT+FLAKF+GR+ L++ I A P H R
Sbjct:     3 MSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLR 62

Query:    61 PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIXXXXXXXXXXXX 120
             P +F+SLL EACGR VNP+ G+VGLL SGNW +C+ AVE V+ G   +            
Sbjct:    63 PGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEP-VKEIATDAATIGQ 121

Query:   121 GPKPNNFD-----KDEGSPPAQSNPSSDGVMTGKRGRGRSP-AMSFYSDTTDFQSSKRGG 174
             GP    +D     KD+ S  A +  +   +   +R +  S  A+   S+    ++S    
Sbjct:   122 GPPLKIYDIRHISKDDNSAAAATGSTDLKLAKTRRAKRVSTVAIQAESEGKSDEASHDSS 181

Query:   175 DHHQDK 180
               HQ +
Sbjct:   182 LSHQSE 187

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

TAIR|locus:2201267 LBD42 "AT1G68510" [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 68/104 (65%), Positives = 87/104 (83%)

Query:     1 MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60
             +SCNGCRVLRKGC++ C +R CLQWI + ++Q NATLFLAKF+GR+ LL+ I + P H R
Sbjct:     3 ISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDHLR 62

Query:    61 PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSG 104
             PA+F+SLL+EACGR VNPVDG+VGL+ SGNW  C+AAV+ VL+G
Sbjct:    63 PAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNG 106

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2197500 LBD4 "LOB domain-containing protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 4.6e-07, P = 4.6e-07
 Identities = 27/86 (31%), Positives = 45/86 (52%)

Query:     3 CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPA 62
             C  C++LR+ C++ C+        D P+   N    + + FG S++   +  +P HQR  
Sbjct:    14 CAACKLLRRRCAQDCVFSPYFP-ADEPQKFAN----VHRVFGASNVNKMLQELPIHQRGD 68

Query:    63 LFQSLLFEACGRTVNPVDGAVGLLSS 88
                S+++EA  R  +PV G VG +SS
Sbjct:    69 AVSSMVYEANARVRDPVYGCVGAISS 94

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2060842 ASL5 [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 28/85 (32%), Positives = 42/85 (49%)

Query:     3 CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPA 62
             C  C++LR+ C++ CI          P    +    + K FG S++   +  +P HQR  
Sbjct:     9 CASCKLLRRRCAKDCIFAPYF-----PPDDPHKFAIVHKVFGASNVSKMLQELPVHQRAD 63

Query:    63 LFQSLLFEACGRTVNPVDGAVGLLS 87
                SL+FEA  R  +PV G VG +S
Sbjct:    64 AVNSLVFEANARVRDPVYGCVGAIS 88

GO:0005634 "nucleus" evidence=ISM

GO:0003677 "DNA binding" evidence=TAS

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0010016 "shoot system morphogenesis" evidence=IMP

TAIR|locus:2026611 LBD1 "LOB domain-containing protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 9.3e-06, P = 9.3e-06
 Identities = 25/84 (29%), Positives = 43/84 (51%)

Query:     3 CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPA 62
             C  C++LR+ C+E C+L         P      T+   + FG S+++ F+  +P+ QR  
Sbjct:    34 CAACKILRRRCAERCVLAPYFP----PTDPAKFTI-AHRVFGASNIIKFLQELPESQRTD 88

Query:    63 LFQSLLFEACGRTVNPVDGAVGLL 86
                S+++EA  R  +PV G  G +
Sbjct:    89 AVNSMVYEAEARIRDPVYGCAGAI 112

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2126881 JLO "JAGGED LATERAL ORGANS" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
 Identities = 35/103 (33%), Positives = 51/103 (49%)

Query:     3 CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLA--KFFGRSDLLSFIAAVPQHQR 60
             C  C+ LR+ C   CI      + D+   QG A  F A  K FG S++   +  VP+H+R
Sbjct:    18 CGACKFLRRKCVAGCIFAP---YFDSE--QG-AAHFAAVHKVFGASNVSKLLHHVPEHKR 71

Query:    61 PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLS 103
             P    S+ FEA  R  +P+ G V  + S    V   +++T LS
Sbjct:    72 PDAVVSICFEAQARLRDPIYGCVSHIVSLQQQV--VSLQTELS 112

GO:0005634 "nucleus" evidence=ISM

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IMP

GO:0010089 "xylem development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SZE8	LBD39_ARATH	No assigned EC number	0.7767	0.5935	0.4625	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00014946001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (222 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	187
pfam03195	101	pfam03195, DUF260, Protein of unknown function DUF	5e-35

>gnl|CDD|190559 pfam03195, DUF260, Protein of unknown function DUF260

 Score =  118 bits (298), Expect = 5e-35
 Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 5/106 (4%)

Query: 2   SCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRP 61
            C  C+ LR+ C   C+L         P  Q      + K FG S++   + A+P  QR 
Sbjct: 1   PCAACKHLRRKCPPDCVLAPYF-----PAEQPARFANVHKLFGASNVTKLLKALPPEQRD 55

Query: 62  ALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTL 107
              +SLL+EA  R  +PV G VG++ S    + +   E  L    L
Sbjct: 56  DAMRSLLYEADARARDPVYGCVGVIWSLQQQLEQLQAELALVKAQL 101

Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	187
PF03195	101	DUF260: Protein of unknown function DUF260; InterP	100.0

>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function

Probab=100.00  E-value=2.8e-46  Score=285.68  Aligned_cols=101  Identities=31%  Similarity=0.571  Sum_probs=95.9

Q ss_pred             CccchhhcccCCCCCCccccccCCCCCchhhhhhhHHHHhhhchhcHHHHHhhCCCCChHHHHHHHHHhhccCCCCCCCC
Q 029809            2 SCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPALFQSLLFEACGRTVNPVDG   81 (187)
Q Consensus         2 ~CAACK~lRRrC~~~CilAPyf~~Fpa~~~q~fa~~~vhKvFG~sNv~kmL~~lp~~~R~~a~~SL~YEA~~R~~DPVyG   81 (187)
                      +|||||||||+|+++|+||||   ||++++++|.+  ||||||++||+|||+++|+++|+++|+||+|||++|.+|||||
T Consensus         1 ~CaaCk~lRr~C~~~C~laPy---FP~~~~~~F~~--vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~G   75 (101)
T PF03195_consen    1 PCAACKHLRRRCSPDCVLAPY---FPADQPQRFAN--VHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYG   75 (101)
T ss_pred             CChHHHHHhCCCCCCCcCCCC---CChhHHHHHHH--HHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcc
Confidence            799999999999999999999   79999999985  9999999999999999999999999999999999999999999


Q ss_pred             cHHHHHhHHHHHHHHHHHHHHccCcc
Q 029809           82 AVGLLSSGNWHVCRAAVETVLSGGTL  107 (187)
Q Consensus        82 cvG~I~~Lq~qi~qaave~VL~g~~i  107 (187)
                      |+|+||.|+|||++++.|.++.+..|
T Consensus        76 c~G~i~~L~~ql~~~~~el~~~~~~l  101 (101)
T PF03195_consen   76 CVGIISQLQQQLQQLQAELALVRAQL  101 (101)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            99999999999999888887766543

The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00