Citrus Sinensis ID: 029811

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
Protein Sequence
MAQQPVNVPAPTPPPNPAMYSNPVSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLLDPAGNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTTLNVFWQVIPNKRFVILRSKAAGQNDPVLFMQESPTQLLPRCTKRKPLEATSLTRIDSP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEEcccccccccEEEEEEEEEEEEEcccEEEEcccccEEEEEEcccccccccEEEEcccccEEEEEEEcccccccccEEEEccccccccEEEEEEccccccccEEEEEEEEEcccccEEEEEEEEccccccEEEEccccEEEEccccccccccccEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccEEEEcccccccccEEEEEEEEEEEEccccEEEEEccccEEEEEccccccccccEEEEcccccEEEEEEcccccccccEEEEEcccccccccEEEEEEcccEEEccEEEEEEccccccccccEEEEEcccccEEEEEccccEEEEEEEEccccEEEEEEcccccc
Coil and Loop (DISEMBL)
maqqpvnvpaptpppnpamysnpvsiigpqyclpypvDLAVVRKFMtladgsftvtdindnIMFKVKEkhfslhdkrtlldpagnpvvTITEKLFSAhekhsvfrgastdaKDLLFTVGASSVLQLKTTLNVFWQVIPNKRFVILRskaagqndpvlfmqesptqllprctkrkpleatsltridsp
Flexible Loop (DISEMBL)
maqqpvnvpaptpppnpAMYSNPVSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHfslhdkrtlldpagnPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTTLNVFWQVIPNKRFVILRSKAAGQNDPVLfmqesptqllprctkrkpleatsltridsp
Low Complexity Region (SEG)
MAQQpvnvpaptpppnpaMYSNPVSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLLDPAGNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTTLNVFWQVIPNKRFVILRSKAAGQNDPVLFMQESPTQLLPRCTKRKPLEATSLTRIDSP
Disordered region (IsUnstruct)
**********************PVSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLLDPAGNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTTLNVFWQVIPNKRFVILRSKAAG****VLF*****************************
Disordered Region (DISOPRED)
***********************VSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLLDPAGNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTTLNVFWQVIPNKRFVILRSKAAGQNDPVLFMQESPTQLLPRCTKRKPLEATSLT*I***
Disordered Region (DISEMBL)
********PAPTPPPNPAMYSNPVSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLLDPAGNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTTLNVFWQVIPNKRFVILRSKAAGQNDPVLFMQESPTQLLPRCTKRKPLEATSLTRIDSP
Disordered Region (DISPRO)
**********P*PPPNP*MYSNPVSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLLDPAGNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTTLNVFWQVIPNKRFVILRSKAAGQNDPVLFMQESPTQLLPRCTKRKPLEATSLTRID**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQQPVNVPAPTPPPNPAMYSNPVSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLLDPAGNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTTLNVFWQVIPNKRFVILRSKAAGQNDPVLFMQESPTQLLPRCTKRKPLEATSLTRIDSP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	187	2.2.26 [Sep-21-2011]
Q9LZX1	217	Protein LURP-one-related	no	no	0.780	0.672	0.480	5e-36
Q9SF24	194	Protein LURP-one-related	no	no	0.588	0.567	0.495	8e-27
Q9LQ36	224	Protein LURP-one-related	no	no	0.700	0.584	0.436	3e-26
Q9ZQR8	207	Protein LURP1 OS=Arabidop	no	no	0.812	0.734	0.398	5e-26
Q9LYM3	204	Protein LURP-one-related	no	no	0.588	0.539	0.336	1e-14
Q9LSQ1	185	Protein LURP-one-related	no	no	0.529	0.535	0.390	7e-14
B3H5L1	197	Protein LURP-one-related	no	no	0.582	0.553	0.327	2e-11

>sp|Q9LZX1|LOR15_ARATH Protein LURP-one-related 15 OS=Arabidopsis thaliana GN=At5g01750 PE=1 SV=1

 Score =  150 bits (379), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 74/154 (48%), Positives = 102/154 (66%), Gaps = 8/154 (5%)

Query: 10  APTPPPNPAMYSNPVSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEK 69
           APTP            ++ P+YC PYP+D+A+VRK M+L DG+F +TD+N N++FKVKE 
Sbjct: 18  APTPQAGGV-------VVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEP 70

Query: 70  HFSLHDKRTLLDPAGNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTT 129
            F LHDKR LLD +G PVVT+ EK+ S H++  VFRG STD +DLL+TV  SS+LQLKT 
Sbjct: 71  VFGLHDKRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTK 130

Query: 130 LNVFWQVIPNKRFVILRSKAAG-QNDPVLFMQES 162
           L+VF     +++    R K +  +   V++  ES
Sbjct: 131 LDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGES 164

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SF24|LOR10_ARATH Protein LURP-one-related 10 OS=Arabidopsis thaliana GN=At3g11740 PE=2 SV=2

 Score =  119 bits (299), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 55/111 (49%), Positives = 80/111 (72%), Gaps = 1/111 (0%)

Query: 24  VSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLLDPA 83
           ++I+ P +C PYP++L +VRK MTL DG+F VTD+N N++FKVKE  FS+ DKR LLD  
Sbjct: 1   MAIVSPNFCAPYPIELGIVRKVMTLTDGNFAVTDVNGNLLFKVKEPLFSISDKRILLDAY 60

Query: 84  GNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQ-LKTTLNVF 133
             P++T+ E   S H++  V+RG STD  DLL+T+  SS++Q +K  L++F
Sbjct: 61  DTPILTLRENKVSLHDRWLVYRGKSTDQSDLLYTLKRSSMIQIMKPKLDIF 111

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ36|LOR1_ARATH Protein LURP-one-related 1 OS=Arabidopsis thaliana GN=At1g33840 PE=2 SV=2

 Score =  118 bits (295), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/133 (43%), Positives = 85/133 (63%), Gaps = 2/133 (1%)

Query: 3   QQPVNV--PAPTPPPNPAMYSNPVSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDIND 60
           QQP     P  T P  P        I+ P+YC  +PVDLA+VRK + + DG+F +T+   
Sbjct: 2   QQPYEYRYPQGTGPSAPPPPPKAGVIVDPKYCSLHPVDLAIVRKVLKITDGNFVITNAEG 61

Query: 61  NIMFKVKEKHFSLHDKRTLLDPAGNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGA 120
           N++FKVK+  FSLH+KR L+D  G  V+T+  K+ + H++  VFRG ST+  DLL+TV  
Sbjct: 62  NLLFKVKDPFFSLHEKRILMDGFGTKVLTLKGKIMTMHDRWLVFRGGSTEEVDLLYTVKR 121

Query: 121 SSVLQLKTTLNVF 133
           S+++Q+ T L+VF
Sbjct: 122 SNMVQITTKLDVF 134

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQR8|LURP1_ARATH Protein LURP1 OS=Arabidopsis thaliana GN=LURP1 PE=2 SV=1

 Score =  117 bits (293), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 91/153 (59%), Gaps = 1/153 (0%)

Query: 22  NPVSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLLD 81
            P  I+G +YC P PV LA+VRK M + DG+F +T  +  ++FKVK+  FSLH KR LLD
Sbjct: 3   QPCVIVGSKYCSPNPVGLAIVRKVMKITDGNFVITSADGKLLFKVKDPLFSLHGKRILLD 62

Query: 82  PAGNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTTLNVFWQVIPNKR 141
            +G  V+T+  K+ + H++  VFRG ST+   LL+TV  SS++QL   L VF      ++
Sbjct: 63  CSGAKVLTLRGKMMTMHDRWQVFRGGSTEEGALLYTVKRSSMIQLAPKLEVFLANNVEEK 122

Query: 142 FVILRSKAAGQNDP-VLFMQESPTQLLPRCTKR 173
               + K A  +D  V++  +S T +   C K+
Sbjct: 123 ICDFKVKGAWLDDSCVVYAGDSDTIIAHMCGKQ 155

Involved in basal defense against virulent oomycetes. Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYM3|LOR14_ARATH Protein LURP-one-related 14 OS=Arabidopsis thaliana GN=At3g56180 PE=2 SV=2

 Score = 79.7 bits (195), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 65/110 (59%)

Query: 24  VSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLLDPA 83
           +S++  Q+C PYP+DL V RK    +   + V D + N++ ++  + +  + KR + DPA
Sbjct: 16  ISVVSDQFCNPYPMDLLVKRKVQNFSKDYYEVFDPSGNLLLQIDGQAWGFNRKRVMRDPA 75

Query: 84  GNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTTLNVF 133
           G  ++++ +K  +   K  V  G S + +DLLFTV  S  + LKT+++VF
Sbjct: 76  GFTILSMRQKGLALKNKWEVHGGESKEREDLLFTVQQSQAVSLKTSVDVF 125

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSQ1|LOR13_ARATH Protein LURP-one-related 13 OS=Arabidopsis thaliana GN=At3g16900 PE=3 SV=1

 Score = 76.6 bits (187), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 64/110 (58%), Gaps = 11/110 (10%)

Query: 26  IIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLLDPAGN 85
           ++G ++  P P+DL +            TV D   N +FKVK   F LH+KR L+DP  +
Sbjct: 15  LVGSEFVRPQPLDLTITGD---------TVKDATGNKVFKVKTPLFGLHNKRILVDPNDS 65

Query: 86  PVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTTLNVFWQ 135
           P+VT+  K+ S H++  V+RG+  D  D +FTV  SS +QLKT + VF +
Sbjct: 66  PIVTMKMKVTSKHDRWQVYRGSDLD--DKIFTVKRSSTVQLKTRVEVFLK 113

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|B3H5L1|LOR9_ARATH Protein LURP-one-related 9 OS=Arabidopsis thaliana GN=At3g10986 PE=3 SV=1

 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 66/110 (60%), Gaps = 1/110 (0%)

Query: 24  VSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLLDPA 83
           VS++G  +C PY  +L V R+  +L    + V D+++N++F V    +++  KR L D A
Sbjct: 2   VSVVGEMFCNPYTTELVVRRRRESLKRERYDVFDLSNNLIFTVDGGIWNIRRKRVLRDAA 61

Query: 84  GNPVVTI-TEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTTLNV 132
           G P++++ T+ L        V++G ST++ +LLF+    ++L  KT+L+V
Sbjct: 62  GIPLLSMRTKGLVPMRYNWEVYKGDSTESDNLLFSAREPNLLSFKTSLDV 111

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
297810225	217	hypothetical protein ARALYDRAFT_486891 [	0.577	0.497	0.629	2e-34
18413737	174	LURP-one-related 15 protein [Arabidopsis	0.780	0.839	0.480	2e-34
30679390	217	LURP-one-related 15 protein [Arabidopsis	0.780	0.672	0.480	2e-34
21553506	174	unknown [Arabidopsis thaliana]	0.780	0.839	0.474	6e-34
356568182	216	PREDICTED: protein LURP-one-related 15-l	0.657	0.569	0.536	6e-33
388504720	214	unknown [Lotus japonicus]	0.620	0.542	0.546	7e-33
388516681	216	unknown [Lotus japonicus]	0.620	0.537	0.546	7e-33
225439608	216	PREDICTED: protein LURP-one-related 15 [	0.684	0.592	0.515	1e-32
71042553	217	Chain A, X-Ray Structure Of Protein From	0.780	0.672	0.474	2e-32
449439823	215	PREDICTED: protein LURP-one-related 15-l	0.663	0.576	0.543	2e-32

>gi|297810225|ref|XP_002872996.1| hypothetical protein ARALYDRAFT_486891 [Arabidopsis lyrata subsp. lyrata] gi|297318833|gb|EFH49255.1| hypothetical protein ARALYDRAFT_486891 [Arabidopsis lyrata subsp. lyrata]

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/108 (62%), Positives = 86/108 (79%)

Query: 26  IIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLLDPAGN 85
           I+ P+YC PYPVDLA+VRK M L DG+F +TD+N N++FKVKE  F LHDKR LLD +GN
Sbjct: 27  IVDPRYCAPYPVDLAIVRKMMKLTDGNFVITDVNGNLLFKVKEPVFGLHDKRILLDGSGN 86

Query: 86  PVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTTLNVF 133
           PVVT+ EK+ S H++  VFRG ST+ +DLL+TV  SS+LQLKT L+VF
Sbjct: 87  PVVTLREKMVSMHDRWQVFRGGSTEQRDLLYTVKRSSMLQLKTKLDVF 134

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18413737|ref|NP_568095.1| LURP-one-related 15 protein [Arabidopsis thaliana] gi|332003003|gb|AED90386.1| LURP-one-related 15 protein [Arabidopsis thaliana]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/154 (48%), Positives = 102/154 (66%), Gaps = 8/154 (5%)

Query: 10  APTPPPNPAMYSNPVSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEK 69
           APTP            ++ P+YC PYP+D+A+VRK M+L DG+F +TD+N N++FKVKE 
Sbjct: 18  APTPQAGGV-------VVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEP 70

Query: 70  HFSLHDKRTLLDPAGNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTT 129
            F LHDKR LLD +G PVVT+ EK+ S H++  VFRG STD +DLL+TV  SS+LQLKT 
Sbjct: 71  VFGLHDKRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTK 130

Query: 130 LNVFWQVIPNKRFVILRSKAAG-QNDPVLFMQES 162
           L+VF     +++    R K +  +   V++  ES
Sbjct: 131 LDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGES 164

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30679390|ref|NP_850751.1| LURP-one-related 15 protein [Arabidopsis thaliana] gi|75181359|sp|Q9LZX1.1|LOR15_ARATH RecName: Full=Protein LURP-one-related 15 gi|13926237|gb|AAK49593.1|AF372877_1 AT5g01750/T20L15_20 [Arabidopsis thaliana] gi|7329648|emb|CAB82745.1| putative protein [Arabidopsis thaliana] gi|22655412|gb|AAM98298.1| At5g01750/T20L15_20 [Arabidopsis thaliana] gi|332003004|gb|AED90387.1| LURP-one-related 15 protein [Arabidopsis thaliana]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/154 (48%), Positives = 102/154 (66%), Gaps = 8/154 (5%)

Query: 10  APTPPPNPAMYSNPVSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEK 69
           APTP            ++ P+YC PYP+D+A+VRK M+L DG+F +TD+N N++FKVKE 
Sbjct: 18  APTPQAGGV-------VVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEP 70

Query: 70  HFSLHDKRTLLDPAGNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTT 129
            F LHDKR LLD +G PVVT+ EK+ S H++  VFRG STD +DLL+TV  SS+LQLKT 
Sbjct: 71  VFGLHDKRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTK 130

Query: 130 LNVFWQVIPNKRFVILRSKAAG-QNDPVLFMQES 162
           L+VF     +++    R K +  +   V++  ES
Sbjct: 131 LDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGES 164

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553506|gb|AAM62599.1| unknown [Arabidopsis thaliana]

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 73/154 (47%), Positives = 102/154 (66%), Gaps = 8/154 (5%)

Query: 10  APTPPPNPAMYSNPVSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEK 69
           APTP            ++ P+YC PYP+D+A+VRK M+L DG+F +TD+N N++FKVKE 
Sbjct: 18  APTPQAGGV-------VVDPRYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEP 70

Query: 70  HFSLHDKRTLLDPAGNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTT 129
            F LHDKR LLD +G PVVT+ EK+ S H++  VFRG ST+ +DLL+TV  SS+LQLKT 
Sbjct: 71  VFGLHDKRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTEQRDLLYTVKRSSMLQLKTK 130

Query: 130 LNVFWQVIPNKRFVILRSKAAG-QNDPVLFMQES 162
           L+VF     +++    R K +  +   V++  ES
Sbjct: 131 LDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGES 164

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568182|ref|XP_003552292.1| PREDICTED: protein LURP-one-related 15-like [Glycine max]

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 93/123 (75%)

Query: 11  PTPPPNPAMYSNPVSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKH 70
           P P  +  M + P ++IGPQ+C PYP+DLAVV+K MTL+DG+F VTD+N N++FKVK   
Sbjct: 11  PYPSTSVPMPAVPTAVIGPQFCAPYPLDLAVVKKVMTLSDGNFVVTDVNGNVVFKVKGSL 70

Query: 71  FSLHDKRTLLDPAGNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTTL 130
            +L D+R L+D AGNP+VT+  K+ +AH++   FRG ST+AKDL+FT+  SS++Q KT L
Sbjct: 71  MTLRDRRILVDAAGNPLVTLRRKIMTAHDRWQAFRGESTEAKDLIFTLKRSSLIQFKTKL 130

Query: 131 NVF 133
           +VF
Sbjct: 131 DVF 133

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504720|gb|AFK40426.1| unknown [Lotus japonicus]

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 65/119 (54%), Positives = 90/119 (75%), Gaps = 3/119 (2%)

Query: 15  PNPAMYSNPVSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLH 74
           P PA+   P ++ GPQYC PYPVDLA+V+K MT++DG+F VTDIN NI+FKVK    +L 
Sbjct: 18  PMPAV---PTTVFGPQYCAPYPVDLAIVKKVMTISDGNFVVTDINGNIVFKVKGSLLTLR 74

Query: 75  DKRTLLDPAGNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTTLNVF 133
           D+R L+D AGNP+ T+  K+ +AH++   +RG ST+AKDL+FT+  SS++Q KT L+VF
Sbjct: 75  DRRVLIDAAGNPIATLRRKIMTAHDRWQAYRGESTEAKDLIFTLKRSSLIQFKTKLDVF 133

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516681|gb|AFK46402.1| unknown [Lotus japonicus]

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 65/119 (54%), Positives = 90/119 (75%), Gaps = 3/119 (2%)

Query: 15  PNPAMYSNPVSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLH 74
           P PA+   P ++ GPQYC PYPVDLA+V+K MT++DG+F VTDIN NI+FKVK    +L 
Sbjct: 18  PMPAV---PTTVFGPQYCAPYPVDLAIVKKVMTISDGNFVVTDINGNIVFKVKGSLLTLR 74

Query: 75  DKRTLLDPAGNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTTLNVF 133
           D+R L+D AGNP+ T+  K+ +AH++   +RG ST+AKDL+FT+  SS++Q KT L+VF
Sbjct: 75  DRRVLIDAAGNPIATLRRKIMTAHDRWQAYRGESTEAKDLIFTLKRSSLIQFKTKLDVF 133

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439608|ref|XP_002266957.1| PREDICTED: protein LURP-one-related 15 [Vitis vinifera]

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/132 (51%), Positives = 92/132 (69%), Gaps = 4/132 (3%)

Query: 2   AQQPVNVPAPTPPPNPAMYSNPVSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDN 61
           A  PV VPA    P P    NP++++GPQ+C  YPVDL +V+K MT++DG+F VTD+N +
Sbjct: 7   AAGPVTVPAAAYQPLP----NPMTVVGPQFCAQYPVDLVIVKKMMTISDGNFAVTDVNGS 62

Query: 62  IMFKVKEKHFSLHDKRTLLDPAGNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGAS 121
           ++FKVK    SL D R LLD AG P+V++  K+ S H +  VFRG S+D KDLLF+   S
Sbjct: 63  VIFKVKGTLLSLRDHRVLLDAAGKPIVSLQSKMLSMHRRWQVFRGESSDPKDLLFSTKLS 122

Query: 122 SVLQLKTTLNVF 133
           S++QLKT L+VF
Sbjct: 123 SIIQLKTGLDVF 134

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|71042553|pdb|1ZXU|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana At5g01750 gi|150261513|pdb|2Q4M|A Chain A, Ensemble Refinement Of The Crystal Structure Of Protein From Arabidopsis Thaliana At5g01750

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/154 (47%), Positives = 98/154 (63%), Gaps = 8/154 (5%)

Query: 10  APTPPPNPAMYSNPVSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEK 69
           APTP            ++ P+YC PYP+D A+VRK  +L DG+F +TD+N N++FKVKE 
Sbjct: 18  APTPQAGGV-------VVDPKYCAPYPIDXAIVRKXXSLTDGNFVITDVNGNLLFKVKEP 70

Query: 70  HFSLHDKRTLLDPAGNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTT 129
            F LHDKR LLD +G PVVT+ EK  S H++  VFRG STD +DLL+TV  SS LQLKT 
Sbjct: 71  VFGLHDKRVLLDGSGTPVVTLREKXVSXHDRWQVFRGGSTDQRDLLYTVKRSSXLQLKTK 130

Query: 130 LNVFWQVIPNKRFVILRSKAAG-QNDPVLFMQES 162
           L+VF     +++    R K +  +   V++  ES
Sbjct: 131 LDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGES 164

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439823|ref|XP_004137685.1| PREDICTED: protein LURP-one-related 15-like [Cucumis sativus] gi|449533365|ref|XP_004173646.1| PREDICTED: protein LURP-one-related 15-like [Cucumis sativus]

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/127 (54%), Positives = 90/127 (70%), Gaps = 3/127 (2%)

Query: 6   VNVPAPTPPPNPAMYSNPVSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFK 65
           + +PA T     A  ++P++++G QY  PYPVDL + +K MT+ +GSF VTD+N  +MFK
Sbjct: 7   IQLPAQT---TYAALASPLTVLGSQYIAPYPVDLRITKKVMTMKEGSFAVTDVNGTLMFK 63

Query: 66  VKEKHFSLHDKRTLLDPAGNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQ 125
           VK   FSLHD+R LLD A NPV+T  +KLFSAH K   +RG S D+KDLLFTV  SS+LQ
Sbjct: 64  VKGSVFSLHDRRVLLDAADNPVITFQQKLFSAHRKWYAYRGESRDSKDLLFTVKKSSILQ 123

Query: 126 LKTTLNV 132
            KT L+V
Sbjct: 124 FKTHLDV 130

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
TAIR|locus:2181082	217	AT5G01750 "AT5G01750" [Arabido	0.577	0.497	0.601	9.5e-34
TAIR|locus:2081481	194	AT3G11740 "AT3G11740" [Arabido	0.588	0.567	0.495	5.7e-27
TAIR|locus:2055250	207	LURP1 "AT2G14560" [Arabidopsis	0.807	0.729	0.401	7.6e-25
TAIR|locus:2086062	185	AT3G16900 "AT3G16900" [Arabido	0.518	0.524	0.407	4.2e-15
TAIR|locus:2078506	204	AT3G56180 "AT3G56180" [Arabido	0.588	0.539	0.336	5.4e-15
TAIR|locus:4515103053	197	AT3G10986 "AT3G10986" [Arabido	0.582	0.553	0.327	3.1e-12

TAIR|locus:2181082 AT5G01750 "AT5G01750" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 65/108 (60%), Positives = 86/108 (79%)

Query:    26 IIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLLDPAGN 85
             ++ P+YC PYP+D+A+VRK M+L DG+F +TD+N N++FKVKE  F LHDKR LLD +G 
Sbjct:    27 VVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGT 86

Query:    86 PVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTTLNVF 133
             PVVT+ EK+ S H++  VFRG STD +DLL+TV  SS+LQLKT L+VF
Sbjct:    87 PVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVF 134

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2081481 AT3G11740 "AT3G11740" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 55/111 (49%), Positives = 80/111 (72%)

Query:    24 VSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLLDPA 83
             ++I+ P +C PYP++L +VRK MTL DG+F VTD+N N++FKVKE  FS+ DKR LLD  
Sbjct:     1 MAIVSPNFCAPYPIELGIVRKVMTLTDGNFAVTDVNGNLLFKVKEPLFSISDKRILLDAY 60

Query:    84 GNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQL-KTTLNVF 133
               P++T+ E   S H++  V+RG STD  DLL+T+  SS++Q+ K  L++F
Sbjct:    61 DTPILTLRENKVSLHDRWLVYRGKSTDQSDLLYTLKRSSMIQIMKPKLDIF 111

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055250 LURP1 "AT2G14560" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 61/152 (40%), Positives = 91/152 (59%)

Query:    23 PVSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLLDP 82
             P  I+G +YC P PV LA+VRK M + DG+F +T  +  ++FKVK+  FSLH KR LLD 
Sbjct:     4 PCVIVGSKYCSPNPVGLAIVRKVMKITDGNFVITSADGKLLFKVKDPLFSLHGKRILLDC 63

Query:    83 AGNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTTLNVFWQVIPNKRF 142
             +G  V+T+  K+ + H++  VFRG ST+   LL+TV  SS++QL   L VF      ++ 
Sbjct:    64 SGAKVLTLRGKMMTMHDRWQVFRGGSTEEGALLYTVKRSSMIQLAPKLEVFLANNVEEKI 123

Query:   143 VILRSKAAGQNDP-VLFMQESPTQLLPRCTKR 173
                + K A  +D  V++  +S T +   C K+
Sbjct:   124 CDFKVKGAWLDDSCVVYAGDSDTIIAHMCGKQ 155

GO:0003674 "molecular_function" evidence=ND

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

TAIR|locus:2086062 AT3G16900 "AT3G16900" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 44/108 (40%), Positives = 64/108 (59%)

Query:    26 IIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLLDPAGN 85
             ++G ++  P P+DL +        D   TV D   N +FKVK   F LH+KR L+DP  +
Sbjct:    15 LVGSEFVRPQPLDLTIT------GD---TVKDATGNKVFKVKTPLFGLHNKRILVDPNDS 65

Query:    86 PVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTTLNVF 133
             P+VT+  K+ S H++  V+RG+  D  D +FTV  SS +QLKT + VF
Sbjct:    66 PIVTMKMKVTSKHDRWQVYRGSDLD--DKIFTVKRSSTVQLKTRVEVF 111

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2078506 AT3G56180 "AT3G56180" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 37/110 (33%), Positives = 65/110 (59%)

Query:    24 VSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLLDPA 83
             +S++  Q+C PYP+DL V RK    +   + V D + N++ ++  + +  + KR + DPA
Sbjct:    16 ISVVSDQFCNPYPMDLLVKRKVQNFSKDYYEVFDPSGNLLLQIDGQAWGFNRKRVMRDPA 75

Query:    84 GNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTTLNVF 133
             G  ++++ +K  +   K  V  G S + +DLLFTV  S  + LKT+++VF
Sbjct:    76 GFTILSMRQKGLALKNKWEVHGGESKEREDLLFTVQQSQAVSLKTSVDVF 125

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4515103053 AT3G10986 "AT3G10986" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 36/110 (32%), Positives = 66/110 (60%)

Query:    24 VSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLLDPA 83
             VS++G  +C PY  +L V R+  +L    + V D+++N++F V    +++  KR L D A
Sbjct:     2 VSVVGEMFCNPYTTELVVRRRRESLKRERYDVFDLSNNLIFTVDGGIWNIRRKRVLRDAA 61

Query:    84 GNPVVTI-TEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTTLNV 132
             G P++++ T+ L        V++G ST++ +LLF+    ++L  KT+L+V
Sbjct:    62 GIPLLSMRTKGLVPMRYNWEVYKGDSTESDNLLFSAREPNLLSFKTSLDV 111


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.134   0.391    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      187       173   0.00097  108 3  11 22  0.38    32
                                                     31  0.48    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  141 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.39u 0.11s 15.50t   Elapsed:  00:00:00
  Total cpu time:  15.39u 0.11s 15.50t   Elapsed:  00:00:00
  Start:  Thu May  9 19:18:05 2013   End:  Thu May  9 19:18:05 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.6__25__AT5G01750.2 annotation not avaliable (217 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	187
pfam04525	185	pfam04525, Tub_2, Tubby C 2	6e-33
PRK00723	297	PRK00723, PRK00723, phosphatidylserine decarboxyla	0.003

>gnl|CDD|218129 pfam04525, Tub_2, Tubby C 2

 Score =  115 bits (290), Expect = 6e-33
 Identities = 49/118 (41%), Positives = 70/118 (59%)

Query: 26  IIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLLDPAGN 85
           ++  +Y  P P DL V RK +      FTV D N N++F+V    F L D+R L+D +GN
Sbjct: 3   VVSSEYLSPEPEDLTVWRKSLVFNGDGFTVYDSNGNLVFRVDGYAFGLSDERVLMDSSGN 62

Query: 86  PVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTTLNVFWQVIPNKRFV 143
           P++TI  K  S H++  V+RG  T+ KD LFTV  SS++QLKT+ +VF +   N    
Sbjct: 63  PLLTIRRKKLSLHDRWEVYRGEGTEGKDPLFTVRRSSIVQLKTSSSVFSKRNSNVIVD 120

The structure of this family has been solved. It comprises a 12-stranded beta barrel with a central C-terminal alpha helix. This helix is thought to be a transmembrane helix. It is structurally similar to the C-terminal domain of the Tubby protein. In plants it plays a role in defense against pathogens. Length = 185

>gnl|CDD|179097 PRK00723, PRK00723, phosphatidylserine decarboxylase; Provisional

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 22/127 (17%)

Query: 45  FMTLADGSFTV-TDINDNIMFKVKEKHFSLHDKRTLLDP------AGNPVVTITEKLFSA 97
            ++  DG      +I+ N +F+VK K +SL  K  L DP      AG   + +       
Sbjct: 108 LISPGDGRLLAYENIDLNSLFQVKGKTYSL--KELLGDPELAKKYAGGTCLILRLCPTDY 165

Query: 98  HEKHSVFRG---ASTDAKDLLFTVGASSVLQLKTTLNVFWQVIPNKR-FVILRSKAAGQN 153
           H  H    G    +   K   ++V   + + LK    +F +   NKR + I +S+  G  
Sbjct: 166 HRFHFPDSGICEETRKIKGHYYSV---NPIALKKIFELFCE---NKREWSIFKSENFGD- 218

Query: 154 DPVLFMQ 160
             +L+++
Sbjct: 219 --ILYVE 223

Length = 297

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	187
PF04525	187	Tub_2: Tubby C 2; InterPro: IPR007612 This is a fa	99.97
COG4894	159	Uncharacterized conserved protein [Function unknow	99.76
PF03803	221	Scramblase: Scramblase ; InterPro: IPR005552 Scram	98.71
COG4894	159	Uncharacterized conserved protein [Function unknow	98.55
PF04525	187	Tub_2: Tubby C 2; InterPro: IPR007612 This is a fa	98.4
PF03803	221	Scramblase: Scramblase ; InterPro: IPR005552 Scram	96.95
KOG0621	292	consensus Phospholipid scramblase [Cell wall/membr	93.75
PF01690	465	PLRV_ORF5: Potato leaf roll virus readthrough prot	85.72

>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins

Probab=99.97  E-value=3.9e-31  Score=214.44  Aligned_cols=147  Identities=34%  Similarity=0.558  Sum_probs=88.1

Q ss_pred             EEecCccccCcCEEEEEEeeeceecCCCeEEEcCCCCEEEEEEe-ecCCCCCeEEEECCCCCeEEEEEeccccccccEEE
Q 029811           25 SIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKE-KHFSLHDKRTLLDPAGNPVVTITEKLFSAHEKHSV  103 (187)
Q Consensus        25 ~vV~~~~~a~~~~~L~vk~K~~sls~~~F~I~D~~G~~vf~V~g-k~~s~~~~~~l~D~~G~~L~~Ir~K~lsl~~~w~v  103 (187)
                      +||+++||++++++|+||+|.+++++++|+|+|++|+++|+|+| +.+++++++.|+|++|++|++|++|.++++++|++
T Consensus         2 ~vv~~~~~~~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g~~~~s~~~~~~l~D~~G~~L~~i~~k~~~l~~~w~i   81 (187)
T PF04525_consen    2 VVVDAQYCSPQPVTLTVKKKSLSFSGDDFTVYDENGNVVFRVDGGKFFSIGKKRTLMDASGNPLFTIRRKLFSLRPTWEI   81 (187)
T ss_dssp             -SS-GGGB-SS-EEEEEE----------EEEEETTS-EEEEEE--SCTTBTTEEEEE-TTS-EEEEEE--------EEEE
T ss_pred             cEECHHHcCCCceEEEEEEEEeeecCCCEEEEcCCCCEEEEEEEecccCCCCEEEEECCCCCEEEEEEeeecccceEEEE
Confidence            45699999999999999999998888899999999999999999 89999999999999999999999999999999999


Q ss_pred             EECCCCCCCCeEEEEEecccccCcceEEEEEecCC-----CCceEEEEEeecC-CCCceEEecCCCceeeeeeeccc
Q 029811          104 FRGASTDAKDLLFTVGASSVLQLKTTLNVFWQVIP-----NKRFVILRSKAAG-QNDPVLFMQESPTQLLPRCTKRK  174 (187)
Q Consensus       104 ~~g~~~~~~~~lftvk~~~~~~~k~k~~V~~~~~~-----~g~~~~~~i~g~~-~~~~~i~~~~s~~~~v~~i~~rk  174 (187)
                      |.+++.+..+++|+||+++....++++.+|+....     .++..+|+|+|+| .++|.|+.  +.+.+||+| +||
T Consensus        82 ~~~~~~~~~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~~~I~~--~~g~~VA~i-~rk  155 (187)
T PF04525_consen   82 YRGGGSEGKKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWDRSFTIYD--SGGRVVAEI-SRK  155 (187)
T ss_dssp             EETT---GGGEEEEEE----------EEEEET--T----------SEEEES-TTTT--EEEE--CC--EEEEE-EE-
T ss_pred             EECCCCccCceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEecCcEEEEEE--cCCCEEEEE-ecc
Confidence            99986555678999998877777899999987532     3567789999998 88999996  668999999 533

; PDB: 1ZXU_A 2Q4M_A.

>COG4894 Uncharacterized conserved protein [Function unknown]

Probab=99.76  E-value=3e-19  Score=138.84  Aligned_cols=126  Identities=20%  Similarity=0.256  Sum_probs=101.4

Q ss_pred             CEEEEEEeeeceecCCCeEEEcCCCCEEEEEEeecCCCCCeEEEECCCCCeEEEEEeccccccccEEEEECCCCCCCCeE
Q 029811           36 PVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLLDPAGNPVVTITEKLFSAHEKHSVFRGASTDAKDLL  115 (187)
Q Consensus        36 ~~~L~vk~K~~sls~~~F~I~D~~G~~vf~V~gk~~s~~~~~~l~D~~G~~L~~Ir~K~lsl~~~w~v~~g~~~~~~~~l  115 (187)
                      +.+|.|+||++++++ +|.|+|.+|+.+|+|+|+.|++++.+.+.|++|.+|.+|++|++++.++|++-.|+    |. +
T Consensus         5 ~~tl~mkQk~~~~gd-~f~I~d~dgE~af~VeGs~f~i~dtlti~Da~G~~l~~i~~kll~l~~~yeI~d~~----g~-~   78 (159)
T COG4894           5 MITLFMKQKMFSFGD-AFHIYDRDGEEAFKVEGSFFSIGDTLTITDASGKTLVSIEQKLLSLLPRYEISDGG----GT-V   78 (159)
T ss_pred             hHhHhhhhhhhhccc-ceEEECCCCcEEEEEeeeEEeeCceEEEEecCCCChHHHHHHHhhccceeEEEcCC----CC-E
Confidence            467999999999988 99999999999999999999999999999999999999999999999999997665    34 8


Q ss_pred             EEEEecccccCcceEEEEEecCCCCceEEEEEeecC-CCCceEEecCCCceeeeeeeccccccccc
Q 029811          116 FTVGASSVLQLKTTLNVFWQVIPNKRFVILRSKAAG-QNDPVLFMQESPTQLLPRCTKRKPLEATS  180 (187)
Q Consensus       116 ftvk~~~~~~~k~k~~V~~~~~~~g~~~~~~i~g~~-~~~~~i~~~~s~~~~v~~i~~rk~~~~~~  180 (187)
                      |.++ +++..+++++++...+        +|+.|+. .....+-+|+.   ++|.+ .||.+..+|
T Consensus        79 ~~vr-KK~tf~Rdk~e~d~~~--------~eihGNi~d~efkl~dg~~---~~aeV-sKkwf~~rd  131 (159)
T COG4894          79 CEVR-KKVTFSRDKFEIDGLN--------WEIHGNIWDDEFKLTDGEN---VRAEV-SKKWFSWRD  131 (159)
T ss_pred             EEEE-EEEEEEeeeEEEcCCC--------eEEecceeceEEEEecCCc---eehhh-eeeeEeccc
Confidence            8888 5666668888885443        4555552 33344555554   77777 677666554

>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site

Probab=98.71  E-value=8e-07  Score=73.40  Aligned_cols=124  Identities=14%  Similarity=0.126  Sum_probs=84.1

Q ss_pred             EEEEEeeecee-------cCCCeEEEcCCCCEEEEEEeecC---------CCCCeEEEECCCCCeEEEEEecccc-----
Q 029811           38 DLAVVRKFMTL-------ADGSFTVTDINDNIMFKVKEKHF---------SLHDKRTLLDPAGNPVVTITEKLFS-----   96 (187)
Q Consensus        38 ~L~vk~K~~sl-------s~~~F~I~D~~G~~vf~V~gk~~---------s~~~~~~l~D~~G~~L~~Ir~K~ls-----   96 (187)
                      .+.|+|+...+       ..+.|.|+|.+|+.+|.+....-         .-.-+..++|..|+++++|+|..--     
T Consensus        23 ~l~I~Q~~e~~e~~~~~e~~N~Y~I~n~~g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~~g~~vl~i~Rp~~c~~C~~  102 (221)
T PF03803_consen   23 QLLIKQQIEPLEIFTGFETPNRYDIKNPNGQQIYYAVEESDCCSRQCCGSHRPFKMHIYDNYGREVLTIERPFKCCSCCP  102 (221)
T ss_pred             EEEEEEEEEEeceecccccCceEEEECCCCCEEEEEEEeCcceeeeecCCCCCEEEEEEecCCCEEEEEEcCCcceeccc
Confidence            45566654432       23699999999999999976521         1133568899999999999986421     


Q ss_pred             -ccccEEEEECCCCCCCCeEEEEEecccccCcceEEEEEecCCCCceEEEEEeecCC-----CCceEEecCCCceeeeee
Q 029811           97 -AHEKHSVFRGASTDAKDLLFTVGASSVLQLKTTLNVFWQVIPNKRFVILRSKAAGQ-----NDPVLFMQESPTQLLPRC  170 (187)
Q Consensus        97 -l~~~w~v~~g~~~~~~~~lftvk~~~~~~~k~k~~V~~~~~~~g~~~~~~i~g~~~-----~~~~i~~~~s~~~~v~~i  170 (187)
                       .....+|+.    +.++.+.+|+ ..+..++++++|+-.+    ....+.|+|...     .+..-.+-+.++..|++|
T Consensus       103 ~~~~~~~V~~----p~g~~iG~I~-q~~~~~~~~f~I~d~~----~~~~~~I~gp~~~~~~~~~~~F~I~~~~~~~vg~I  173 (221)
T PF03803_consen  103 CCLQEMEVES----PPGNLIGSIR-QPFSCCRPNFDIFDAN----GNPIFTIKGPCCCCSCCCDWEFEIKDPNGQEVGSI  173 (221)
T ss_pred             ccceeEEEec----CCCcEEEEEE-EcCcccceEEEEEECC----CceEEEEeCCcceeccccceeeeeecccCcEEEEE
Confidence             124455533    4589999999 6677789999986554    355688888752     222222234467999999

Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].

>COG4894 Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=2e-07  Score=73.03  Aligned_cols=69  Identities=20%  Similarity=0.357  Sum_probs=63.5

Q ss_pred             cCcCEEEEEEeeeceecCCCeEEEcCCCCEEEEEEeecCCCCCeEEEECCCCCeEEEEEeccccccccEEE
Q 029811           33 LPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLLDPAGNPVVTITEKLFSAHEKHSV  103 (187)
Q Consensus        33 a~~~~~L~vk~K~~sls~~~F~I~D~~G~~vf~V~gk~~s~~~~~~l~D~~G~~L~~Ir~K~lsl~~~w~v  103 (187)
                      ..++.++.|+.+.|++.+ .|+|+|+.|..++.++.+++++..++.|.|++|+ ++.+++|..-++++|++
T Consensus        26 ~dgE~af~VeGs~f~i~d-tlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g~-~~~vrKK~tf~Rdk~e~   94 (159)
T COG4894          26 RDGEEAFKVEGSFFSIGD-TLTITDASGKTLVSIEQKLLSLLPRYEISDGGGT-VCEVRKKVTFSRDKFEI   94 (159)
T ss_pred             CCCcEEEEEeeeEEeeCc-eEEEEecCCCChHHHHHHHhhccceeEEEcCCCC-EEEEEEEEEEEeeeEEE
Confidence            367899999999999988 8999999999999999999999999999999999 88888887666888887

>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins

Probab=98.40  E-value=4.2e-06  Score=67.72  Aligned_cols=96  Identities=20%  Similarity=0.368  Sum_probs=50.5

Q ss_pred             CcCEEEEEEe-eeceecCCCeEEEcCCCCEEEEEEeecCCCCCeEEEECCCCCe----EEEEEec-cccccccEEEEECC
Q 029811           34 PYPVDLAVVR-KFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLLDPAGNP----VVTITEK-LFSAHEKHSVFRGA  107 (187)
Q Consensus        34 ~~~~~L~vk~-K~~sls~~~F~I~D~~G~~vf~V~gk~~s~~~~~~l~D~~G~~----L~~Ir~K-~lsl~~~w~v~~g~  107 (187)
                      .+...|.++. +.+++++ .+.|+|++|+++++++.+.+++..+..+++++|..    |++|+++ .+...+...+|...
T Consensus        36 ~G~~vf~V~g~~~~s~~~-~~~l~D~~G~~L~~i~~k~~~l~~~w~i~~~~~~~~~~~i~tvkk~~~~~~~~~~~~f~~~  114 (187)
T PF04525_consen   36 NGNVVFRVDGGKFFSIGK-KRTLMDASGNPLFTIRRKLFSLRPTWEIYRGGGSEGKKPIFTVKKKSMLQNKDSFDVFLPP  114 (187)
T ss_dssp             TS-EEEEEE--SCTTBTT-EEEEE-TTS-EEEEEE--------EEEEEETT---GGGEEEEEE----------EEEEET-
T ss_pred             CCCEEEEEEEecccCCCC-EEEEECCCCCEEEEEEeeecccceEEEEEECCCCccCceEEEEEEecccCCCcceeEEEec
Confidence            5678999999 8999988 99999999999999999999999999999999884    9999998 44445556666652


Q ss_pred             C-----CCCCCeEEEEEecccccCcceEEEE
Q 029811          108 S-----TDAKDLLFTVGASSVLQLKTTLNVF  133 (187)
Q Consensus       108 ~-----~~~~~~lftvk~~~~~~~k~k~~V~  133 (187)
                      .     ...+..-++|+ -.  .+..+++|+
T Consensus       115 ~~~~~~~~~~~~~~~i~-G~--~~~~~~~I~  142 (187)
T PF04525_consen  115 KSNISIDDSEGPDFEIK-GN--FWDRSFTIY  142 (187)
T ss_dssp             -T----------SEEEE-S---TTTT--EEE
T ss_pred             ccceeecCCCCceEEEE-EE--ecCcEEEEE
Confidence            1     12344456666 22  334566664

; PDB: 1ZXU_A 2Q4M_A.

>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site

Probab=96.95  E-value=0.022  Score=46.87  Aligned_cols=65  Identities=12%  Similarity=0.252  Sum_probs=52.7

Q ss_pred             eEEEcCCCCEEEEEEeecCC------CCCeEEEECCCCCeEEEEEeccccccccEEEEECCCCCCCCeEEEEEec
Q 029811           53 FTVTDINDNIMFKVKEKHFS------LHDKRTLLDPAGNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGAS  121 (187)
Q Consensus        53 F~I~D~~G~~vf~V~gk~~s------~~~~~~l~D~~G~~L~~Ir~K~lsl~~~w~v~~g~~~~~~~~lftvk~~  121 (187)
                      ..|+|..|+.|++++-...-      ...+..+.++.|+.|++|+++...+.+.+.|+..+    ++.+++|+-+
T Consensus        78 ~~i~D~~g~~vl~i~Rp~~c~~C~~~~~~~~~V~~p~g~~iG~I~q~~~~~~~~f~I~d~~----~~~~~~I~gp  148 (221)
T PF03803_consen   78 MHIYDNYGREVLTIERPFKCCSCCPCCLQEMEVESPPGNLIGSIRQPFSCCRPNFDIFDAN----GNPIFTIKGP  148 (221)
T ss_pred             EEEEecCCCEEEEEEcCCcceecccccceeEEEecCCCcEEEEEEEcCcccceEEEEEECC----CceEEEEeCC
Confidence            36799999999999986421      23678888999999999999876688999998765    5789999844

Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].

>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]

Probab=93.75  E-value=1.1  Score=39.29  Aligned_cols=111  Identities=9%  Similarity=0.077  Sum_probs=63.7

Q ss_pred             CCeEEEcCCCCEEEEEEeec---------CCCCCeEEEECCCCCeEEEEEeccccccccEEEEECCCCCCCCeEEEEEec
Q 029811           51 GSFTVTDINDNIMFKVKEKH---------FSLHDKRTLLDPAGNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGAS  121 (187)
Q Consensus        51 ~~F~I~D~~G~~vf~V~gk~---------~s~~~~~~l~D~~G~~L~~Ir~K~lsl~~~w~v~~g~~~~~~~~lftvk~~  121 (187)
                      +.|.|.|.+|+.+|.+-...         ..-.-...++|.-|+++++++|...-...   .+.+    ....-+++...
T Consensus        99 NRY~v~~~~g~~v~~~~E~S~~~~Rq~~g~~RpF~~~i~D~~g~eVl~~~R~~~c~~~---~c~~----~~~~~~~v~~p  171 (292)
T KOG0621|consen   99 NRYVVHDMYGQPLYYAMERSNVFARQYLGTHRPFAMRIMDNFGQEVLTCKRPFPCCSS---ACAL----CLAQEIEIQSP  171 (292)
T ss_pred             cEEEEEcCCcChhHHHHhhchHHHHHhhccCCcceeEeecccCcEEEEEecccccccc---cccc----ccccEEEEEcC
Confidence            78999999999998654432         11244578889999999999998542221   1111    12223444433


Q ss_pred             ccccC----------cceEEEEEecCCCCceEEEEEeecC-------C-CCceEEecCCCceeeeeeeccc
Q 029811          122 SVLQL----------KTTLNVFWQVIPNKRFVILRSKAAG-------Q-NDPVLFMQESPTQLLPRCTKRK  174 (187)
Q Consensus       122 ~~~~~----------k~k~~V~~~~~~~g~~~~~~i~g~~-------~-~~~~i~~~~s~~~~v~~i~~rk  174 (187)
                      ....+          .++++|  .+  .+..+.|.|+|..       . ..--+...+ .+.+|.+| .||
T Consensus       172 ~~~~lG~v~q~~~~~~~~f~i--~~--~~~~~v~~v~gp~~~~~~~~~d~~f~~~~~d-~~~~vg~I-~k~  236 (292)
T KOG0621|consen  172 PMGLLGKVLQTWGCVNPNFHL--WD--RDGNLVFLVEGPRCCTFACCDDTVFFPKTTD-NGRIVGSI-SRK  236 (292)
T ss_pred             CCceEEEEEEeeccccceEEE--Ec--ccceeEEEEEcCceeEEEeecCcceeEEEcC-CCeEEEEE-eec
Confidence            33222          233333  22  4457778888872       1 111233333 58889999 454

>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein

Probab=85.72  E-value=1.6  Score=40.51  Aligned_cols=61  Identities=26%  Similarity=0.467  Sum_probs=36.1

Q ss_pred             CCCCCCCCCCCCCCCceEEecCcccc--CcCEEEEEEeeeceecCCCeEEEcCCCCEEEEEEeecCC
Q 029811            8 VPAPTPPPNPAMYSNPVSIIGPQYCL--PYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFS   72 (187)
Q Consensus         8 ~~~~~~~~~~~~~~~pv~vV~~~~~a--~~~~~L~vk~K~~sls~~~F~I~D~~G~~vf~V~gk~~s   72 (187)
                      -|.|||||.|.+..+|.+-.-..|+.  .-+.+.+..+.    +++...|++.+++..++++...+.
T Consensus        10 ~P~P~P~P~P~P~PePtP~~~~RF~~Y~G~p~~~I~tr~----n~d~I~v~~l~~q~~~yiEdE~~~   72 (465)
T PF01690_consen   10 GPSPTPPPPPAPTPEPTPAKHERFIGYEGVPQTKISTRE----NDDSISVRSLNSQRMRYIEDENWN   72 (465)
T ss_pred             CCCCCCCCCCcccCCCcccCccceEEEecccceeeeccc----cccceEeeccCceeEEEEecccce
Confidence            34455555555555555544667775  22333333222    345778888899999988886543

This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	187
1zxu_A	217	X-Ray Structure Of Protein From Arabidopsis Thalian		1e-34

>pdb|1ZXU|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana At5g01750 Length = 217

Iteration: 1
 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/138 (50%), Positives = 94/138 (68%), Gaps = 1/138 (0%)
Query: 26  IIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLLDPAGN 85
           ++ P+YC PYP+D A+VRK  +L DG+F +TD+N N++FKVKE  F LHDKR LLD +G 
Sbjct: 27  VVDPKYCAPYPIDXAIVRKXXSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGT 86
Query: 86  PVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTTLNVFWQVIPNKRFVIL 145
           PVVT+ EK  S H++  VFRG STD +DLL+TV  SS LQLKT L+VF     +++    
Sbjct: 87  PVVTLREKXVSXHDRWQVFRGGSTDQRDLLYTVKRSSXLQLKTKLDVFLGHNKDEKRCDF 146
Query: 146 RSKAAG-QNDPVLFMQES 162
           R K +  +   V++  ES
Sbjct: 147 RVKGSWLERSCVVYAGES 164

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	187
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	5e-33

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A Length = 217

 Score =  116 bits (291), Expect = 5e-33
 Identities = 69/134 (51%), Positives = 91/134 (67%), Gaps = 1/134 (0%)

Query: 1   MAQ-QPVNVPAPTPPPNPAMYSNPVSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDIN 59
           M Q      P  + P           ++ P+YC PYP+D+A+VRK M+L DG+F +TD+N
Sbjct: 1   MEQPYVYAYPQGSGPSGAPTPQAGGVVVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVN 60

Query: 60  DNIMFKVKEKHFSLHDKRTLLDPAGNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVG 119
            N++FKVKE  F LHDKR LLD +G PVVT+ EK+ S H++  VFRG STD +DLL+TV 
Sbjct: 61  GNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVK 120

Query: 120 ASSVLQLKTTLNVF 133
            SS+LQLKT L+VF
Sbjct: 121 RSSMLQLKTKLDVF 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	187
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	100.0
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	98.77

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A

Probab=100.00  E-value=2.1e-34  Score=237.19  Aligned_cols=174  Identities=43%  Similarity=0.729  Sum_probs=119.1

Q ss_pred             CCCccC--CCCCCCCCCCCCCCceEEecCccccCcCEEEEEEeeeceecCCCeEEEcCCCCEEEEEEeecCCCCCeEEEE
Q 029811            3 QQPVNV--PAPTPPPNPAMYSNPVSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLL   80 (187)
Q Consensus         3 ~~~~~~--~~~~~~~~~~~~~~pv~vV~~~~~a~~~~~L~vk~K~~sls~~~F~I~D~~G~~vf~V~gk~~s~~~~~~l~   80 (187)
                      |||-.-  |.-+.||.+.++.+|++||+++||++++++|+||||++++++++|+|+|++|+++|+|+|+.+++++++.|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~~~~~~~~~~~l~   81 (217)
T 1zxu_A            2 EQPYVYAYPQGSGPSGAPTPQAGGVVVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLL   81 (217)
T ss_dssp             ----------------------CCCSSCGGGBCSSCEEEEEECC-----CCCEEEEETTSCEEEEEECSSTTCCSEEEEE
T ss_pred             CCceEEeCCCCCCCCCCCCCCCcEEEECccccCCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEccccCCCCEEEEE
Confidence            455443  445678888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeEEEEEeccccccccEEEEECCCCCCCCeEEEEEecccccCcceEEEEEecCCCCceEEEEEeecC-CCCceEEe
Q 029811           81 DPAGNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTTLNVFWQVIPNKRFVILRSKAAG-QNDPVLFM  159 (187)
Q Consensus        81 D~~G~~L~~Ir~K~lsl~~~w~v~~g~~~~~~~~lftvk~~~~~~~k~k~~V~~~~~~~g~~~~~~i~g~~-~~~~~i~~  159 (187)
                      |++|++|++|++|.++++++|++|.++..+.++++|+||+++...++++++|++.++.+++..+|+|+|+| .++|.|+.
T Consensus        82 D~~G~~l~~i~rk~~~~~~~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~~~V~~~~~~~~~~~~~~I~G~~~~~~f~I~~  161 (217)
T 1zxu_A           82 DGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYA  161 (217)
T ss_dssp             CTTSCEEEEEEC------CEEEEEETTCCCGGGEEEEEEC-------CCEEEEETTCCC-CCCSEEEESCTTTTCCEEEE
T ss_pred             CCCCCEEEEEEccccccCcEEEEEcCCCCCCCcEEEEEEEeccccCCCeEEEEECCCCCCCceEEEEEEeEeCCEEEEEE
Confidence            99999999999999999999999998744445689999976533379999999988666667889999999 78899997


Q ss_pred             cCCCceeeeeeecccccccc
Q 029811          160 QESPTQLLPRCTKRKPLEAT  179 (187)
Q Consensus       160 ~~s~~~~v~~i~~rk~~~~~  179 (187)
                      ++ .+.+||+| +|| ++.+
T Consensus       162 ~~-~~~~Va~I-~kk-~~~~  178 (217)
T 1zxu_A          162 GE-SDAIVAQM-HRK-HTVQ  178 (217)
T ss_dssp             TT-TCCEEEEE-EEC-----
T ss_pred             CC-CCEEEEEE-Eee-eecc
Confidence            65 36899999 666 6644

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A

Probab=98.77  E-value=1.9e-07  Score=75.99  Aligned_cols=111  Identities=19%  Similarity=0.211  Sum_probs=74.4

Q ss_pred             CcCEEEEEEeeeceecCCCeEEEcCCCCEEEEEEeecCCCCCeEEEECCCCC----eEEEEEecc-ccccccEEEEECCC
Q 029811           34 PYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLLDPAGN----PVVTITEKL-FSAHEKHSVFRGAS  108 (187)
Q Consensus        34 ~~~~~L~vk~K~~sls~~~F~I~D~~G~~vf~V~gk~~s~~~~~~l~D~~G~----~L~~Ir~K~-lsl~~~w~v~~g~~  108 (187)
                      .+...|.++++.+++++ .+.|+|.+|+++++++.+.++++.+..++++.+.    +|++|+++. +++.+.|+|+.++.
T Consensus        60 ~G~~vf~V~~~~~~~~~-~~~l~D~~G~~l~~i~rk~~~~~~~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~~~V~~~~~  138 (217)
T 1zxu_A           60 NGNLLFKVKEPVFGLHD-KRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHN  138 (217)
T ss_dssp             TSCEEEEEECSSTTCCS-EEEEECTTSCEEEEEEC------CEEEEEETTCCCGGGEEEEEEC-------CCEEEEETTC
T ss_pred             CCCEEEEEEccccCCCC-EEEEECCCCCEEEEEEccccccCcEEEEEcCCCCCCCcEEEEEEEeccccCCCeEEEEECCC
Confidence            66789999999888877 9999999999999999999999999999998765    799999873 56889999998753


Q ss_pred             CCCCCeEEEEEecccccCcceEEEEEecCCCCceEEEEEeecC
Q 029811          109 TDAKDLLFTVGASSVLQLKTTLNVFWQVIPNKRFVILRSKAAG  151 (187)
Q Consensus       109 ~~~~~~lftvk~~~~~~~k~k~~V~~~~~~~g~~~~~~i~g~~  151 (187)
                      ...+...++|+ -.  ++..+++|.-..   ++....+|+..|
T Consensus       139 ~~~~~~~~~I~-G~--~~~~~f~I~~~~---~~~~Va~I~kk~  175 (217)
T 1zxu_A          139 KDEKRCDFRVK-GS--WLERSCVVYAGE---SDAIVAQMHRKH  175 (217)
T ss_dssp             CC-CCCSEEEE-SC--TTTTCCEEEETT---TCCEEEEEEEC-
T ss_pred             CCCCceEEEEE-Ee--EeCCEEEEEECC---CCEEEEEEEeee
Confidence            33345567876 33  345777775431   134555665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	187
d2q4ma1	189	d.23.1.2 (A:24-212) Hypothetical protein At5g01750	1e-34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	187
d2q4ma1	189	Hypothetical protein At5g01750 {Thale cress (Arabi	100.0
d2q4ma1	189	Hypothetical protein At5g01750 {Thale cress (Arabi	98.41