Citrus Sinensis ID: 029829

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
Protein Sequence
MHKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT
Secondary Structure (PSIPRED)
cccccccEEEEEEEEcccEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEccccccEEEEEEEEEEEEEEcccccccHHHHHcEEEEcHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHEEEEEcccccEEEEEcccccEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHccHHHccEHEEEEEEccccccccccEEEEEEEEEccccccccccHHcccEEccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccHHcccccHEEEcc
Coil and Loop (DISEMBL)
MHKCVPNIFSILGFVSYSvmsgqqrsgtkvtfplvwtntccshplyreselieeNALGVRNAAQRKLLDElgicaedvpvdeftplgrilykapsdgkwgehELDYLLFIVRDvsvnpnpdevaEYKYVNREQLKELLRKAdageeglklspwFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT
Flexible Loop (DISEMBL)
MHKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYkapsdgkwGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAgeeglklspwfRLVVDNFLFKWWDHLEkgtlnevidmktihklt
Low Complexity Region (SEG)
MHKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT
Disordered region (IsUnstruct)
***CVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKT*****
Disordered Region (DISOPRED)
MHKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL*
Disordered Region (DISEMBL)
MHKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT
Disordered Region (DISPRO)
*HKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MHKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	187	2.2.26 [Sep-21-2011]
Q42553	284	Isopentenyl-diphosphate D	yes	no	0.951	0.626	0.853	2e-86
Q39471	286	Isopentenyl-diphosphate D	N/A	no	0.951	0.622	0.853	4e-86
O48964	235	Isopentenyl-diphosphate D	N/A	no	0.951	0.757	0.848	4e-86
O48965	309	Isopentenyl-diphosphate D	N/A	no	0.957	0.579	0.815	5e-85
Q39664	290	Isopentenyl-diphosphate D	N/A	no	0.951	0.613	0.837	1e-84
Q38929	291	Isopentenyl-diphosphate D	no	no	0.951	0.611	0.814	1e-83
Q39472	287	Isopentenyl-diphosphate D	N/A	no	0.951	0.620	0.808	6e-83
O35586	227	Isopentenyl-diphosphate D	N/A	no	0.930	0.766	0.511	2e-48
Q1LZ95	227	Isopentenyl-diphosphate D	yes	no	0.930	0.766	0.511	7e-48
P58044	227	Isopentenyl-diphosphate D	no	no	0.930	0.766	0.5	1e-47

>sp|Q42553|IDI2_ARATH Isopentenyl-diphosphate Delta-isomerase II, chloroplastic OS=Arabidopsis thaliana GN=IPP2 PE=2 SV=1

 Score =  317 bits (813), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 152/178 (85%), Positives = 162/178 (91%)

Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS+  F S   +  QQRS TKVTFPLVWTNTCCSHPLYRESELI++NALGVRNAAQRKLL
Sbjct: 107 FSVFLFNSKYELLLQQRSNTKVTFPLVWTNTCCSHPLYRESELIQDNALGVRNAAQRKLL 166

Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
           DELGI AEDVPVDEFTPLGR+LYKAPSDGKWGEHELDYLLFIVRDV V PNPDEVAE KY
Sbjct: 167 DELGIVAEDVPVDEFTPLGRMLYKAPSDGKWGEHELDYLLFIVRDVKVQPNPDEVAEIKY 226

Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 186
           V+RE+LKEL++KADAGEEGLKLSPWFRLVVDNFL KWWDH+EKGTL E IDMKTIHKL
Sbjct: 227 VSREELKELVKKADAGEEGLKLSPWFRLVVDNFLMKWWDHVEKGTLVEAIDMKTIHKL 284

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 3EC: .EC: 3EC: .EC: 2

>sp|Q39471|IDI2_CLABR Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia breweri GN=IPI2 PE=3 SV=2

 Score =  317 bits (811), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 152/178 (85%), Positives = 163/178 (91%)

Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS+  F S   +  QQRS TKVTFPLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLL
Sbjct: 109 FSVFLFNSKFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENNLGVRNAAQRKLL 168

Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
           DELGI AEDVPVDEFTPL R+LYKAPSDGKWGEHELDYLLFIVRDV+V+PNPDEVAE KY
Sbjct: 169 DELGIPAEDVPVDEFTPLSRMLYKAPSDGKWGEHELDYLLFIVRDVAVHPNPDEVAEIKY 228

Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 186
           VNREQLKELL+KADAGEEGLKLSPWFRLVVDNFL KWWDH+EKGTL+E +DMK+IHKL
Sbjct: 229 VNREQLKELLKKADAGEEGLKLSPWFRLVVDNFLPKWWDHVEKGTLSEAVDMKSIHKL 286

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).

Clarkia breweri (taxid: 36903)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|O48964|IDI1_CAMAC Isopentenyl-diphosphate Delta-isomerase I OS=Camptotheca acuminata GN=IPI1 PE=2 SV=1

 Score =  317 bits (811), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 151/178 (84%), Positives = 162/178 (91%)

Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS+  F S   +  QQRS TKVTFPLVWTNTCCSHPLYRESELI+ENALG RNAAQRKLL
Sbjct: 57  FSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIKENALGARNAAQRKLL 116

Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
           DELGI AEDVPVD+F PLGRILYKAPSDGKWGEHELDYLLFIVRDV+VNPNPDEVA+ KY
Sbjct: 117 DELGIPAEDVPVDQFIPLGRILYKAPSDGKWGEHELDYLLFIVRDVNVNPNPDEVADIKY 176

Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 186
           V R+QLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDH+EKGT++E  DMK+IHKL
Sbjct: 177 VTRDQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHVEKGTMHEAADMKSIHKL 234

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).

Camptotheca acuminata (taxid: 16922)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|O48965|IDI2_CAMAC Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata GN=IPI2 PE=2 SV=1

 Score =  313 bits (801), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 146/179 (81%), Positives = 162/179 (90%)

Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS+  F S   +  QQRS TKVTFPLVWTNTCCSHP YRESEL++ENALGVRNAAQRKLL
Sbjct: 131 FSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPRYRESELVDENALGVRNAAQRKLL 190

Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
           DELGI AEDVPVD+F PLGR+LYKAPSDGKWGEHELDYLLFI+RDV+V+PNPDEVA+ KY
Sbjct: 191 DELGIPAEDVPVDQFIPLGRMLYKAPSDGKWGEHELDYLLFIIRDVNVHPNPDEVADVKY 250

Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 187
           VN++QLK+LLRK DAGEEGLKLSPWFRLVV+NFLFKWWDH+EKGTL +  DMKTIHKLT
Sbjct: 251 VNQDQLKDLLRKVDAGEEGLKLSPWFRLVVENFLFKWWDHVEKGTLQDATDMKTIHKLT 309

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).

Camptotheca acuminata (taxid: 16922)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q39664|IDI2_CLAXA Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia xantiana GN=IPI2 PE=3 SV=1

 Score =  311 bits (798), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 149/178 (83%), Positives = 161/178 (90%)

Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           F++  F S   +  QQRS TKVTFPLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLL
Sbjct: 113 FTVFLFNSKFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENNLGVRNAAQRKLL 172

Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
           DELGI AEDVPVDEFTP+ R+LYKAPSDGKWGEHELDYLLFIVRDV ++PNPDEVA+ KY
Sbjct: 173 DELGIPAEDVPVDEFTPVSRMLYKAPSDGKWGEHELDYLLFIVRDVGIHPNPDEVADIKY 232

Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 186
           VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL KWWDH+EKGTL+E +DMKTIH L
Sbjct: 233 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLPKWWDHVEKGTLSEAVDMKTIHNL 290

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).

Clarkia xantiana (taxid: 3938)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q38929|IDI1_ARATH Isopentenyl-diphosphate Delta-isomerase I, chloroplastic OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=3

 Score =  308 bits (789), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 145/178 (81%), Positives = 158/178 (88%)

Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS+  F S   +  QQRS TKVTFPLVWTNTCCSHPLYRESELIEEN LGVRNAAQRKL 
Sbjct: 114 FSVFLFNSKYELLLQQRSKTKVTFPLVWTNTCCSHPLYRESELIEENVLGVRNAAQRKLF 173

Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
           DELGI AEDVPVDEFTPLGR+LYKAPSDGKWGEHE+DYLLFIVRDV + PNPDEVAE KY
Sbjct: 174 DELGIVAEDVPVDEFTPLGRMLYKAPSDGKWGEHEVDYLLFIVRDVKLQPNPDEVAEIKY 233

Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 186
           V+RE+LKEL++KADAG+E +KLSPWFRLVVDNFL KWWDH+EKGT+ E  DMKTIHKL
Sbjct: 234 VSREELKELVKKADAGDEAVKLSPWFRLVVDNFLMKWWDHVEKGTITEAADMKTIHKL 291

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q39472|IDI1_CLABR Isopentenyl-diphosphate Delta-isomerase I OS=Clarkia breweri GN=IPI1 PE=2 SV=2

 Score =  306 bits (784), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 144/178 (80%), Positives = 159/178 (89%)

Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS+  F S   +  QQRS TKVTFPLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLL
Sbjct: 110 FSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENCLGVRNAAQRKLL 169

Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
           DELGI AED+PVD+F PL RILYKAPSDGKWGEHELDYLLFI+RDV+++PNPDEVAE KY
Sbjct: 170 DELGIPAEDLPVDQFIPLSRILYKAPSDGKWGEHELDYLLFIIRDVNLDPNPDEVAEVKY 229

Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 186
           +NR+ LKELLRKADA EEG+KLSPWFRLVVDNFLFKWWDH+EKG+L +  DMKTIHKL
Sbjct: 230 MNRDDLKELLRKADAEEEGVKLSPWFRLVVDNFLFKWWDHVEKGSLKDAADMKTIHKL 287

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).

Clarkia breweri (taxid: 36903)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|O35586|IDI1_MESAU Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesocricetus auratus GN=IDI1 PE=2 SV=1

 Score =  191 bits (485), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 91/178 (51%), Positives = 132/178 (74%), Gaps = 4/178 (2%)

Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS+  F + + +  QQRS  K+TFP  +TN+CCSHPL    EL E +A+GV+ AAQR+L 
Sbjct: 54  FSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLSNPGELEENDAIGVKRAAQRRLK 113

Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
            ELGI  E+V  +E   L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+  Y Y
Sbjct: 114 AELGIPLEEVDPNEMHYLTRIYYKAQSDGIWGEHEIDYILFLKKNVTLNPDPNEIKSYCY 173

Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 186
           V++E+LKEL++KA +GE  +KL+PWF+++VD FLFKWWD+L    L++ +D + IH++
Sbjct: 174 VSKEELKELVKKAASGE--VKLTPWFKIIVDTFLFKWWDNL--NHLSQFVDHEKIHRM 227

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).

Mesocricetus auratus (taxid: 10036)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q1LZ95|IDI1_BOVIN Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos taurus GN=IDI1 PE=2 SV=2

 Score =  189 bits (481), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 91/178 (51%), Positives = 128/178 (71%), Gaps = 4/178 (2%)

Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS+  F + + +  QQRS  K+TFP  +TNTCCSHPL   SEL E +A+GVR AAQR+L 
Sbjct: 54  FSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPSELEENDAIGVRRAAQRRLK 113

Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
            ELGI  E+VP +E   L RI YKA SD  WGEHE+DY+L + ++V++NP+P+E+  Y Y
Sbjct: 114 AELGIPMEEVPPEEINYLTRIHYKAQSDSIWGEHEIDYILLVKKNVTLNPDPNEIKSYCY 173

Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 186
           V +E+L+EL+ KA  GE  +K++PWF+++ D FLFKWWD+L +  LN  +D + IH++
Sbjct: 174 VTKEELEELIGKAAHGE--IKITPWFQIIADTFLFKWWDNLNR--LNLFVDHEKIHRM 227

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P58044|IDI1_MOUSE Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus musculus GN=Idi1 PE=2 SV=1

 Score =  189 bits (479), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 89/178 (50%), Positives = 131/178 (73%), Gaps = 4/178 (2%)

Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS+  F + + +  QQRS  K+TFP  +TN+CCSHPL    EL E NA+GV+ AA+R+L 
Sbjct: 54  FSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLSNPGELEENNAIGVKRAAKRRLK 113

Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
            ELGI  E+V ++E   L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+  Y Y
Sbjct: 114 AELGIPLEEVDLNEMDYLTRIYYKAQSDGIWGEHEVDYILFLRKNVTLNPDPNEIKSYCY 173

Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 186
           V++E+++E+L+KA +GE  +KL+PWF+++ D FLFKWWD+L    L+  +D + IH+L
Sbjct: 174 VSKEEVREILKKAASGE--IKLTPWFKIIADTFLFKWWDNL--NHLSPFVDHEKIHRL 227

Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
35186998	301	isopentenyl pyrophosphate isomerase [Pue	0.957	0.594	0.888	3e-89
363807460	301	uncharacterized protein LOC100789313 [Gl	0.957	0.594	0.877	3e-88
356531894	295	PREDICTED: isopentenyl-diphosphate Delta	0.957	0.606	0.877	3e-88
357507779	287	Isopentenyl-diphosphate Delta-isomerase	0.957	0.623	0.871	3e-88
255635611	238	unknown [Glycine max]	0.957	0.752	0.877	2e-87
330376138	289	isopentenyl pyrophosphate isomerase [Med	0.957	0.619	0.877	3e-87
388502516	287	unknown [Medicago truncatula]	0.957	0.623	0.871	3e-87
239924067	294	plastid isopentenyl diphosphate isomeras	0.957	0.608	0.871	3e-87
13603408	235	isopentenyl diphosphate isomerase 2 [Nic	0.957	0.761	0.865	1e-86
350538405	235	isopentenyl diphosphate isomerase [Solan	0.957	0.761	0.865	2e-86

>gi|35186998|gb|AAQ84167.1| isopentenyl pyrophosphate isomerase [Pueraria montana var. lobata]

 Score =  332 bits (852), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 159/179 (88%), Positives = 166/179 (92%)

Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS+  F S   +  QQRS TKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL
Sbjct: 123 FSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 182

Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
           DELGI AEDVPVD+FTPLGRILYKAPSDGKWGEHELDYLLFIVRDV+VNPNPDEVA+ KY
Sbjct: 183 DELGIVAEDVPVDQFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVNVNPNPDEVADIKY 242

Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 187
           VNR+QLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLE+GTL EV DMKTIHKLT
Sbjct: 243 VNRDQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEQGTLGEVTDMKTIHKLT 301

Source: Pueraria montana var. lobata

Species: Pueraria montana

Genus: Pueraria

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807460|ref|NP_001242135.1| uncharacterized protein LOC100789313 [Glycine max] gi|255647098|gb|ACU24017.1| unknown [Glycine max]

 Score =  329 bits (844), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 157/179 (87%), Positives = 165/179 (92%)

Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS+  F S   +  QQRS TKVTFPLVWTNTCCSHPLYRESELI+ENALGVRNAAQRKLL
Sbjct: 123 FSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENALGVRNAAQRKLL 182

Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
           DELGI AEDVPVD+FTPLGRILYKAPSDGKWGEHELDYLLFIVRDV+VNPNPDEVA+ KY
Sbjct: 183 DELGIVAEDVPVDQFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVNVNPNPDEVADIKY 242

Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 187
           VNR+QLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLE+G L EV DMKTIHKLT
Sbjct: 243 VNRDQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLERGALGEVTDMKTIHKLT 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531894|ref|XP_003534511.1| PREDICTED: isopentenyl-diphosphate Delta-isomerase II-like [Glycine max]

 Score =  329 bits (844), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 157/179 (87%), Positives = 165/179 (92%)

Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS+  F S   +  QQRS TKVTFPLVWTNTCCSHPLYRESELI+ENALGVRNAAQRKLL
Sbjct: 117 FSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENALGVRNAAQRKLL 176

Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
           DELGI AEDVPVD+FTPLGRILYKAPSDGKWGEHELDYLLFIVRDV+VNPNPDEVA+ KY
Sbjct: 177 DELGIVAEDVPVDKFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVNVNPNPDEVADIKY 236

Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 187
           VNR+QLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLE+GTL E  DMKTIHKLT
Sbjct: 237 VNRDQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEQGTLGEATDMKTIHKLT 295

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507779|ref|XP_003624178.1| Isopentenyl-diphosphate Delta-isomerase [Medicago truncatula] gi|355499193|gb|AES80396.1| Isopentenyl-diphosphate Delta-isomerase [Medicago truncatula]

 Score =  329 bits (843), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 156/179 (87%), Positives = 167/179 (93%)

Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS+  F S   +  QQRS TKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL
Sbjct: 109 FSVFLFNSKYELLLQQRSSTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 168

Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
           DELGI A+DVPVD+FTPLGRILYKAPSDGKWGEHE+DYLLFIVRDV+VNPNPDEVA+ KY
Sbjct: 169 DELGILAQDVPVDQFTPLGRILYKAPSDGKWGEHEVDYLLFIVRDVNVNPNPDEVADIKY 228

Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 187
           VNR+QLKELLRK+DAGEEGLKLSPWFRL+VDNFLFKWWDHLE+GTL EVIDMKTIHKLT
Sbjct: 229 VNRDQLKELLRKSDAGEEGLKLSPWFRLIVDNFLFKWWDHLEQGTLKEVIDMKTIHKLT 287

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255635611|gb|ACU18155.1| unknown [Glycine max]

 Score =  326 bits (836), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 157/179 (87%), Positives = 165/179 (92%)

Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS+  F S   +  QQRS TKVTFPLVWTNTCCSHPLYRESELI+ENALGVRNAAQRKLL
Sbjct: 60  FSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENALGVRNAAQRKLL 119

Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
           DELGI AEDVPVD+FTPLGRILYKAPSDGKWGEHELDYLLFIVRDV+VNPNPDEVA+ KY
Sbjct: 120 DELGIVAEDVPVDKFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVNVNPNPDEVADIKY 179

Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 187
           VNR+QLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLE+GTL E  DMKTIHKLT
Sbjct: 180 VNRDQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEQGTLGEATDMKTIHKLT 238

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|330376138|gb|AEC13301.1| isopentenyl pyrophosphate isomerase [Medicago sativa]

 Score =  326 bits (836), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 157/179 (87%), Positives = 166/179 (92%)

Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS+  F S   +  QQRS TKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL
Sbjct: 111 FSVFLFNSKHELLLQQRSSTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 170

Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
           DELGI A+DVPVD+FTPLGRILYKAPSDGKWGEHELDYLLFIVRDV+VNPNPDEVA+ KY
Sbjct: 171 DELGIPAQDVPVDQFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVNVNPNPDEVADIKY 230

Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 187
           VNR++LKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLE+GTL  VIDMKTIHKLT
Sbjct: 231 VNRDELKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEQGTLKGVIDMKTIHKLT 289

Source: Medicago sativa

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502516|gb|AFK39324.1| unknown [Medicago truncatula]

 Score =  326 bits (835), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 156/179 (87%), Positives = 165/179 (92%)

Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS+  F S      QQRS TKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL
Sbjct: 109 FSVFLFNSKYESLLQQRSSTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 168

Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
           DELGI A+DVPVD+FTPLGRILYKAPSDGKWGEHE+DYLLFIVRDV+VNPNPDEVA+ KY
Sbjct: 169 DELGILAQDVPVDQFTPLGRILYKAPSDGKWGEHEVDYLLFIVRDVNVNPNPDEVADIKY 228

Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 187
           VNR+QLKELLRK DAGEEGLKLSPWFRL+VDNFLFKWWDHLE+GTL EVIDMKTIHKLT
Sbjct: 229 VNRDQLKELLRKFDAGEEGLKLSPWFRLIVDNFLFKWWDHLEQGTLKEVIDMKTIHKLT 287

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|239924067|gb|ACS34993.1| plastid isopentenyl diphosphate isomerase [Solanum lycopersicum]

 Score =  325 bits (834), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 156/179 (87%), Positives = 164/179 (91%)

Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS+  F S   +  QQRS TKVTFPLVWTNTCCSHPLYRESELIEEN+LGVRNAAQRKLL
Sbjct: 116 FSVFIFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEENSLGVRNAAQRKLL 175

Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
           DELGI  EDVPVD+F PLGRILYKAPSDGKWGEHELDYLLF+VR+V++ PNPDEVAE KY
Sbjct: 176 DELGIPGEDVPVDQFIPLGRILYKAPSDGKWGEHELDYLLFMVREVNMKPNPDEVAEVKY 235

Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 187
           VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTL EVIDMKTIHKLT
Sbjct: 236 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLKEVIDMKTIHKLT 294

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13603408|dbj|BAB40974.1| isopentenyl diphosphate isomerase 2 [Nicotiana tabacum]

 Score =  324 bits (830), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 155/179 (86%), Positives = 165/179 (92%)

Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS+  F S   +  QQRS TKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL
Sbjct: 57  FSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 116

Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
           DELGI AEDVPVD+FTPLGR+LYKAPSDGKWGEHELDYLLFIVRDV+VNPNPDEVA+ KY
Sbjct: 117 DELGIPAEDVPVDQFTPLGRMLYKAPSDGKWGEHELDYLLFIVRDVNVNPNPDEVADIKY 176

Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 187
           VN+EQLKELLRKADAGE+GLKLSPWFRLVVDNFLFKWWDH+EKGT+ E  DMKTIHKLT
Sbjct: 177 VNQEQLKELLRKADAGEDGLKLSPWFRLVVDNFLFKWWDHVEKGTIQEAADMKTIHKLT 235

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350538405|ref|NP_001234853.1| isopentenyl diphosphate isomerase [Solanum lycopersicum] gi|160966279|gb|ABX55779.1| isopentenyl diphosphate isomerase [Solanum lycopersicum]

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 155/179 (86%), Positives = 165/179 (92%)

Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS+  F S   +  QQRS TKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL
Sbjct: 57  FSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 116

Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
           DELGI AEDVPVD+FTPLGR+LYKAPSDGKWGEHELDYLLFIVRDV+V+PNPDEVA+ KY
Sbjct: 117 DELGIPAEDVPVDQFTPLGRMLYKAPSDGKWGEHELDYLLFIVRDVNVHPNPDEVADIKY 176

Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 187
           VN+EQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDH+EKGT+ E  DMKTIHKLT
Sbjct: 177 VNQEQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHVEKGTIQEAADMKTIHKLT 235

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
TAIR|locus:2075412	284	IPP2 "isopentenyl pyrophosphat	0.951	0.626	0.853	2.9e-80
TAIR|locus:2171382	291	IPP1 "isopentenyl diphosphate	0.951	0.611	0.814	1.6e-77
UNIPROTKB|Q13907	227	IDI1 "Isopentenyl-diphosphate	0.930	0.766	0.516	1.8e-46
UNIPROTKB|O35586	227	IDI1 "Isopentenyl-diphosphate	0.930	0.766	0.511	3e-46
UNIPROTKB|Q1LZ95	227	IDI1 "Isopentenyl-diphosphate	0.930	0.766	0.511	1e-45
MGI|MGI:2442264	227	Idi1 "isopentenyl-diphosphate	0.930	0.766	0.5	1.3e-45
RGD|621835	227	Idi1 "isopentenyl-diphosphate	0.930	0.766	0.5	3.4e-45
UNIPROTKB|I3LDY2	287	LOC100739304 "Uncharacterized	0.930	0.606	0.505	4.4e-45
UNIPROTKB|F1NZX3	233	IDI1 "Uncharacterized protein"	0.930	0.746	0.505	9.1e-45
ZFIN|ZDB-GENE-050913-44	278	idi1 "isopentenyl-diphosphate	0.930	0.625	0.505	8.1e-44

TAIR|locus:2075412 IPP2 "isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
 Identities = 152/178 (85%), Positives = 162/178 (91%)

Query:     9 FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
             FS+  F S   +  QQRS TKVTFPLVWTNTCCSHPLYRESELI++NALGVRNAAQRKLL
Sbjct:   107 FSVFLFNSKYELLLQQRSNTKVTFPLVWTNTCCSHPLYRESELIQDNALGVRNAAQRKLL 166

Query:    69 DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
             DELGI AEDVPVDEFTPLGR+LYKAPSDGKWGEHELDYLLFIVRDV V PNPDEVAE KY
Sbjct:   167 DELGIVAEDVPVDEFTPLGRMLYKAPSDGKWGEHELDYLLFIVRDVKVQPNPDEVAEIKY 226

Query:   129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 186
             V+RE+LKEL++KADAGEEGLKLSPWFRLVVDNFL KWWDH+EKGTL E IDMKTIHKL
Sbjct:   227 VSREELKELVKKADAGEEGLKLSPWFRLVVDNFLMKWWDHVEKGTLVEAIDMKTIHKL 284

GO:0004452 "isopentenyl-diphosphate delta-isomerase activity" evidence=IEA;IDA

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009908 "flower development" evidence=IMP

GO:0006096 "glycolysis" evidence=RCA

GO:0009060 "aerobic respiration" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=TAS

TAIR|locus:2171382 IPP1 "isopentenyl diphosphate isomerase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
 Identities = 145/178 (81%), Positives = 158/178 (88%)

Query:     9 FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
             FS+  F S   +  QQRS TKVTFPLVWTNTCCSHPLYRESELIEEN LGVRNAAQRKL 
Sbjct:   114 FSVFLFNSKYELLLQQRSKTKVTFPLVWTNTCCSHPLYRESELIEENVLGVRNAAQRKLF 173

Query:    69 DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
             DELGI AEDVPVDEFTPLGR+LYKAPSDGKWGEHE+DYLLFIVRDV + PNPDEVAE KY
Sbjct:   174 DELGIVAEDVPVDEFTPLGRMLYKAPSDGKWGEHEVDYLLFIVRDVKLQPNPDEVAEIKY 233

Query:   129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 186
             V+RE+LKEL++KADAG+E +KLSPWFRLVVDNFL KWWDH+EKGT+ E  DMKTIHKL
Sbjct:   234 VSREELKELVKKADAGDEAVKLSPWFRLVVDNFLMKWWDHVEKGTITEAADMKTIHKL 291

GO:0004452 "isopentenyl-diphosphate delta-isomerase activity" evidence=IEA;IDA;IMP

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009240 "isopentenyl diphosphate biosynthetic process" evidence=IMP

GO:0009536 "plastid" evidence=IDA

GO:0015995 "chlorophyll biosynthetic process" evidence=TAS

UNIPROTKB|Q13907 IDI1 "Isopentenyl-diphosphate Delta-isomerase 1" [Homo sapiens (taxid:9606)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 92/178 (51%), Positives = 131/178 (73%)

Query:     9 FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
             FS+  F + + +  QQRS  K+TFP  +TNTCCSHPL   +EL E +ALGVR AAQR+L 
Sbjct:    54 FSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLK 113

Query:    69 DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
              ELGI  E+VP +E   L RI YKA SDG WGEHE+DY+L + ++V++NP+P+E+  Y Y
Sbjct:   114 AELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRKNVTLNPDPNEIKSYCY 173

Query:   129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 186
             V++E+LKELL+KA +GE  +K++PWF+++   FLFKWWD+L    LN+ +D + I+++
Sbjct:   174 VSKEELKELLKKAASGE--IKITPWFKIIAATFLFKWWDNLNH--LNQFVDHEKIYRM 227

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004452 "isopentenyl-diphosphate delta-isomerase activity" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=IEA

GO:0035634 "response to stilbenoid" evidence=IEA

GO:0050992 "dimethylallyl diphosphate biosynthetic process" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0030145 "manganese ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006695 "cholesterol biosynthetic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|O35586 IDI1 "Isopentenyl-diphosphate Delta-isomerase 1" [Mesocricetus auratus (taxid:10036)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 91/178 (51%), Positives = 132/178 (74%)

Query:     9 FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
             FS+  F + + +  QQRS  K+TFP  +TN+CCSHPL    EL E +A+GV+ AAQR+L 
Sbjct:    54 FSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLSNPGELEENDAIGVKRAAQRRLK 113

Query:    69 DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
              ELGI  E+V  +E   L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+  Y Y
Sbjct:   114 AELGIPLEEVDPNEMHYLTRIYYKAQSDGIWGEHEIDYILFLKKNVTLNPDPNEIKSYCY 173

Query:   129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 186
             V++E+LKEL++KA +GE  +KL+PWF+++VD FLFKWWD+L    L++ +D + IH++
Sbjct:   174 VSKEELKELVKKAASGE--VKLTPWFKIIVDTFLFKWWDNLNH--LSQFVDHEKIHRM 227

GO:0005777 "peroxisome" evidence=IDA

UNIPROTKB|Q1LZ95 IDI1 "Isopentenyl-diphosphate Delta-isomerase 1" [Bos taurus (taxid:9913)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 91/178 (51%), Positives = 128/178 (71%)

Query:     9 FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
             FS+  F + + +  QQRS  K+TFP  +TNTCCSHPL   SEL E +A+GVR AAQR+L 
Sbjct:    54 FSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPSELEENDAIGVRRAAQRRLK 113

Query:    69 DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
              ELGI  E+VP +E   L RI YKA SD  WGEHE+DY+L + ++V++NP+P+E+  Y Y
Sbjct:   114 AELGIPMEEVPPEEINYLTRIHYKAQSDSIWGEHEIDYILLVKKNVTLNPDPNEIKSYCY 173

Query:   129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 186
             V +E+L+EL+ KA  GE  +K++PWF+++ D FLFKWWD+L +  LN  +D + IH++
Sbjct:   174 VTKEELEELIGKAAHGE--IKITPWFQIIADTFLFKWWDNLNR--LNLFVDHEKIHRM 227

GO:0050992 "dimethylallyl diphosphate biosynthetic process" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0035634 "response to stilbenoid" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0004452 "isopentenyl-diphosphate delta-isomerase activity" evidence=IEA

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0006695 "cholesterol biosynthetic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

MGI|MGI:2442264 Idi1 "isopentenyl-diphosphate delta isomerase" [Mus musculus (taxid:10090)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 89/178 (50%), Positives = 131/178 (73%)

Query:     9 FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
             FS+  F + + +  QQRS  K+TFP  +TN+CCSHPL    EL E NA+GV+ AA+R+L 
Sbjct:    54 FSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLSNPGELEENNAIGVKRAAKRRLK 113

Query:    69 DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
              ELGI  E+V ++E   L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+  Y Y
Sbjct:   114 AELGIPLEEVDLNEMDYLTRIYYKAQSDGIWGEHEVDYILFLRKNVTLNPDPNEIKSYCY 173

Query:   129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 186
             V++E+++E+L+KA +GE  +KL+PWF+++ D FLFKWWD+L    L+  +D + IH+L
Sbjct:   174 VSKEEVREILKKAASGE--IKLTPWFKIIADTFLFKWWDNLNH--LSPFVDHEKIHRL 227

GO:0000287 "magnesium ion binding" evidence=ISO

GO:0004452 "isopentenyl-diphosphate delta-isomerase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005777 "peroxisome" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0006695 "cholesterol biosynthetic process" evidence=IEA

GO:0008202 "steroid metabolic process" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0008299 "isoprenoid biosynthetic process" evidence=ISO

GO:0016126 "sterol biosynthetic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0030145 "manganese ion binding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

RGD|621835 Idi1 "isopentenyl-diphosphate delta isomerase 1" [Rattus norvegicus (taxid:10116)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 89/178 (50%), Positives = 129/178 (72%)

Query:     9 FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
             FS+  F + + +  QQRS  K+TFP  +TN+CCSHPL    EL E +A+GV+ AAQR+L 
Sbjct:    54 FSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLNNPGELEENDAMGVKRAAQRRLK 113

Query:    69 DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
              ELGI  E+V ++E   L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+  Y Y
Sbjct:   114 AELGIPLEEVDLNEMNYLTRIYYKAQSDGIWGEHEIDYILFLRKNVTLNPDPNEIKSYCY 173

Query:   129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 186
             V++E+LKE+L+K   GE  +KL+PWF+++ D FLFKWWD+L    L+  +D + IH++
Sbjct:   174 VSKEELKEILKKEARGE--IKLTPWFKIIADAFLFKWWDNLNH--LSPFVDHEKIHRM 227

GO:0000287 "magnesium ion binding" evidence=IEA;ISO

GO:0004452 "isopentenyl-diphosphate delta-isomerase activity" evidence=ISO;TAS

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005777 "peroxisome" evidence=ISO;IDA

GO:0006695 "cholesterol biosynthetic process" evidence=TAS

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA;ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA;ISO

GO:0035634 "response to stilbenoid" evidence=IEA

GO:0050992 "dimethylallyl diphosphate biosynthetic process" evidence=IEA

UNIPROTKB|I3LDY2 LOC100739304 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 90/178 (50%), Positives = 127/178 (71%)

Query:     9 FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
             FS+  F + + +  QQRS  K+TFP  ++N CCSHPL    EL E +A+GVR AAQR+L 
Sbjct:   114 FSVFLFNTENKLLLQQRSDAKITFPGCFSNACCSHPLSTPGELEENDAIGVRRAAQRRLK 173

Query:    69 DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
              ELGI  E+VP +E   L RI YKA SDG WGEHE+DY+L + +DV++NP+P+E+  + Y
Sbjct:   174 AELGIPLEEVPPEEINYLTRIYYKAQSDGIWGEHEIDYILLMKKDVTLNPDPNEIKSHCY 233

Query:   129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 186
             V++E+LKELLRKA  GE  +K++PWF+++ D FLF WWD+L     N+ +D + IH++
Sbjct:   234 VSQEELKELLRKAARGE--VKVTPWFQMIADRFLFHWWDNLNHW--NQFVDHEKIHRM 287

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0004452 "isopentenyl-diphosphate delta-isomerase activity" evidence=IEA

UNIPROTKB|F1NZX3 IDI1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 90/178 (50%), Positives = 126/178 (70%)

Query:     9 FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
             FS+  F + + +  QQRS  K+TFP  +TNTCCSHPL    EL E +A+GVR AAQR++ 
Sbjct:    60 FSVFLFNTENKLLLQQRSNAKITFPDCFTNTCCSHPLSHPLELEENDAIGVRRAAQRRMK 119

Query:    69 DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
              ELGI  E V  +E   L RI YKA SDG WGEHE+DY+LF+ +DV++NP+P+E+  Y Y
Sbjct:   120 AELGIPMEQVTPEEIFYLTRIHYKAKSDGIWGEHEIDYILFVQKDVTLNPDPNEIQSYCY 179

Query:   129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 186
             V +++LK+LL KA   E  +K++PWF+L+ + FLFKWWD+L    LN+ +D + IH++
Sbjct:   180 VTQKELKQLLDKASRNE--VKITPWFKLIAETFLFKWWDNLPH--LNKFVDHEKIHRM 233

GO:0004452 "isopentenyl-diphosphate delta-isomerase activity" evidence=IEA

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

ZFIN|ZDB-GENE-050913-44 idi1 "isopentenyl-diphosphate delta isomerase 1" [Danio rerio (taxid:7955)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 90/178 (50%), Positives = 124/178 (69%)

Query:     9 FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
             FS+  F S   +  QQRS  K+TFP  +TNTCCSHPL+  SEL E++A+GVR AAQR+L 
Sbjct:   105 FSVFLFNSEEKLLLQQRSDAKITFPGCFTNTCCSHPLHTTSELEEQDAIGVRRAAQRRLQ 164

Query:    69 DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
              ELGI  + V  +E T L RI YKA SDG WGEHE+DY++F+ +DV +NP+P+E+  + Y
Sbjct:   165 AELGIPMDQVLPEEMTYLTRIHYKAQSDGVWGEHEIDYIIFMQKDVDLNPDPNEIQSHCY 224

Query:   129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 186
             V++E+LKE+L KA   E  L ++PWF L+ + FLFKWW++L    L   I+   IH++
Sbjct:   225 VSKEELKEILEKAKRKE--LLITPWFSLIAETFLFKWWENLRN--LKPFIEHDRIHRM 278

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0004452 "isopentenyl-diphosphate delta-isomerase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q39471	IDI2_CLABR	5, ., 3, ., 3, ., 2	0.8539	0.9518	0.6223	N/A	no
Q39472	IDI1_CLABR	5, ., 3, ., 3, ., 2	0.8089	0.9518	0.6202	N/A	no
Q5R8R6	IDI1_PONAB	5, ., 3, ., 3, ., 2	0.5112	0.9304	0.7665	yes	no
Q42553	IDI2_ARATH	5, ., 3, ., 3, ., 2	0.8539	0.9518	0.6267	yes	no
Q13907	IDI1_HUMAN	5, ., 3, ., 3, ., 2	0.5168	0.9304	0.7665	yes	no
Q39664	IDI2_CLAXA	5, ., 3, ., 3, ., 2	0.8370	0.9518	0.6137	N/A	no
Q1LZ95	IDI1_BOVIN	5, ., 3, ., 3, ., 2	0.5112	0.9304	0.7665	yes	no
O48964	IDI1_CAMAC	5, ., 3, ., 3, ., 2	0.8483	0.9518	0.7574	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.3.3.2	0.991
3rd Layer	5.3.3	0.976

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: ipiOs1 Os07g0546000 (799 aa) (Oryza sativa Indica)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	187
PLN02552	247	PLN02552, PLN02552, isopentenyl-diphosphate delta-	1e-105
cd02885	165	cd02885, IPP_Isomerase, Isopentenyl diphosphate (I	3e-53
TIGR02150	158	TIGR02150, IPP_isom_1, isopentenyl-diphosphate del	7e-49
COG1443	185	COG1443, Idi, Isopentenyldiphosphate isomerase [Li	3e-38
PRK03759	184	PRK03759, PRK03759, isopentenyl-diphosphate delta-	1e-23
pfam00293	133	pfam00293, NUDIX, NUDIX domain	5e-09
cd04692	144	cd04692, Nudix_Hydrolase_33, Members of the Nudix	3e-07
cd04693	127	cd04693, Nudix_Hydrolase_34, Members of the Nudix	9e-06
cd04697	126	cd04697, Nudix_Hydrolase_38, Members of the Nudix	4e-04
PLN02791	770	PLN02791, PLN02791, Nudix hydrolase homolog	0.003

>gnl|CDD|215303 PLN02552, PLN02552, isopentenyl-diphosphate delta-isomerase

 Score =  302 bits (775), Expect = e-105
 Identities = 135/195 (69%), Positives = 148/195 (75%), Gaps = 22/195 (11%)

Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLY--------RESELIEENALGVR 60
           FS+  F S   +  QQR+ TKVTFPLVWTNTCCSHPLY        RESELI+ N LGV+
Sbjct: 59  FSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVK 118

Query: 61  NAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSD------GKWGEHELDYLLFI--VR 112
           NAAQRKLL ELGI AEDVPVD+FT L R+ YKA  D      GKWGEHELDYLLFI  VR
Sbjct: 119 NAAQRKLLHELGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVR 178

Query: 113 DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKG 172
           DV VNPNPDEVA+ KYVNRE+LKE++RK    E GLKLSPWFRL+VDNFL KWWD LEKG
Sbjct: 179 DVKVNPNPDEVADVKYVNREELKEMMRK----ESGLKLSPWFRLIVDNFLMKWWDDLEKG 234

Query: 173 TLNEVIDMKTIHKLT 187
           T  E +DMKTIHKL 
Sbjct: 235 T--EAVDMKTIHKLM 247

Length = 247

>gnl|CDD|239218 cd02885, IPP_Isomerase, Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

 Score =  166 bits (424), Expect = 3e-53
 Identities = 62/137 (45%), Positives = 85/137 (62%), Gaps = 18/137 (13%)

Query: 23  QQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 82
           Q+R+ +K TFP +WTNTCCSHPL  E         GV++AAQR+L +ELGI         
Sbjct: 47  QRRALSKYTFPGLWTNTCCSHPLPGE---------GVKDAAQRRLREELGI----TGDLL 93

Query: 83  FTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKAD 142
              L R  Y+AP DG   EHE+D++ F   DV++ PNPDEV+EY++V+ E LKEL+  A 
Sbjct: 94  ELVLPRFRYRAPDDGGLVEHEIDHVFFARADVTLIPNPDEVSEYRWVSLEDLKELVAAA- 152

Query: 143 AGEEGLKLSPWFRLVVD 159
                   +PWFRL+++
Sbjct: 153 ----PEAFTPWFRLILE 165

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mammals and plants. Despite sequence variations (mainly at the N-terminus), the core structure is highly conserved. Length = 165

>gnl|CDD|233749 TIGR02150, IPP_isom_1, isopentenyl-diphosphate delta-isomerase, type 1

 Score =  155 bits (394), Expect = 7e-49
 Identities = 64/136 (47%), Positives = 84/136 (61%), Gaps = 21/136 (15%)

Query: 23  QQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 82
           Q+R+ +K+T+P VWTN+CCSHPL  E E           AA R+L +ELGI A+DVP   
Sbjct: 44  QRRALSKITWPGVWTNSCCSHPLPGELE-----------AAIRRLREELGIPADDVP--- 89

Query: 83  FTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKAD 142
            T L R  Y+A     WGEHEL  + F    V +NPNP+EVAEY++V+ E+LKE+L+   
Sbjct: 90  LTVLPRFSYRARD--AWGEHELCPVFFARAPVPLNPNPEEVAEYRWVSLEELKEILKAPW 147

Query: 143 AGEEGLKLSPWFRLVV 158
           AG      SPWFR+  
Sbjct: 148 AG-----FSPWFRIQA 158

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 158

>gnl|CDD|224360 COG1443, Idi, Isopentenyldiphosphate isomerase [Lipid metabolism]

 Score =  129 bits (326), Expect = 3e-38
 Identities = 51/149 (34%), Positives = 76/149 (51%), Gaps = 17/149 (11%)

Query: 23  QQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 82
            +R+ +K T+P VWTN+ CSHPL  ES           +AA+R+L  ELGI  +     E
Sbjct: 50  TRRALSKKTWPGVWTNSVCSHPLPGES---------NEDAARRRLAYELGIEPDQYDKLE 100

Query: 83  FTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKAD 142
             P  R  Y+A       E+E+  +L    D +++PNPDEV +Y++V+ E LKE++    
Sbjct: 101 ILP--RFRYRAADPDGIVENEICPVLAARLDSALDPNPDEVMDYRWVSPEDLKEMVD--- 155

Query: 143 AGEEGLKLSPWFRLVVDNFLFKWWDHLEK 171
                   SPWF +  +N   +  D L  
Sbjct: 156 --ATPWAFSPWFVIQAENDEAR-KDLLSF 181

Length = 185

>gnl|CDD|235156 PRK03759, PRK03759, isopentenyl-diphosphate delta-isomerase; Provisional

 Score = 91.6 bits (228), Expect = 1e-23
 Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 18/139 (12%)

Query: 23  QQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 82
            +R+ +K T+P VWTN+CC HP   ES         + +A  R+  +ELG+       D 
Sbjct: 51  TRRALSKKTWPGVWTNSCCGHPQPGES---------LEDAVIRRCREELGV----EITDL 97

Query: 83  FTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKAD 142
              L    Y+A       E+E+  +       ++ PNPDEV +Y++V+     +LLR  D
Sbjct: 98  ELVLPDFRYRATDPNGIVENEVCPVFAARVTSALQPNPDEVMDYQWVD---PADLLRAVD 154

Query: 143 AGEEGLKLSPWFRLVVDNF 161
           A       SPW  L   N 
Sbjct: 155 AT--PWAFSPWMVLQAANL 171

Length = 184

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 52.1 bits (125), Expect = 5e-09
 Identities = 38/124 (30%), Positives = 52/124 (41%), Gaps = 18/124 (14%)

Query: 23  QQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 82
            +RS   V FP +W             E  EE       AA R+L +E G+      V  
Sbjct: 19  VRRSRPPV-FPGLWELPGGKVE---PGESPEE-------AAVRELEEETGL-----RVLL 62

Query: 83  FTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSV-NPNPDEVAEYKYVNREQLKELLRKA 141
              LG + Y AP     GEH   +L  ++       PN DEV+E ++V  E+L ELL   
Sbjct: 63  LLLLGVLEYPAPGRD-GGEHVHVFLAELLGGEPEPQPNEDEVSEVRWVPLEELLELLLAG 121

Query: 142 DAGE 145
           +  E
Sbjct: 122 EIRE 125

Length = 133

>gnl|CDD|240048 cd04692, Nudix_Hydrolase_33, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 15/123 (12%)

Query: 23  QQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 82
           Q+RS  K T+P +W  +   H L  E+ L +           R+L +ELG+   DV  D+
Sbjct: 22  QKRSANKKTYPGLWDISSAGHILAGETPLED---------GIRELEEELGL---DVSADD 69

Query: 83  FTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVN---PNPDEVAEYKYVNREQLKELLR 139
             PLG    +    GK  + E  ++      V +       +EVA    +  ++  ELL 
Sbjct: 70  LIPLGTFKIEYDHIGKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELLE 129

Query: 140 KAD 142
           + D
Sbjct: 130 EED 132

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 144

>gnl|CDD|240049 cd04693, Nudix_Hydrolase_34, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 43.1 bits (102), Expect = 9e-06
 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 24/121 (19%)

Query: 23  QQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 82
           Q+RS  K  +P +W  +   H    E+            AA+R++ +ELG    ++   E
Sbjct: 17  QKRSPNKDGWPGMWDLSVGGHVQAGETS----------TAAEREVKEELG---LELDFSE 63

Query: 83  FTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVN---PNPDEVAEYKYVNREQLKELLR 139
             PL R  ++A           DY LF   DV +       +EV E K+V+++++  L+ 
Sbjct: 64  LRPLFRYFFEAEG-------FDDYYLF-YADVEIGKLILQKEEVDEVKFVSKDEIDGLIG 115

Query: 140 K 140
            
Sbjct: 116 H 116

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 127

>gnl|CDD|240053 cd04697, Nudix_Hydrolase_38, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 19/127 (14%)

Query: 23  QQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 82
            +R+ TK   P  W           ES L           AQR+L +ELGI  + V    
Sbjct: 17  HKRTLTKDWCPGYWDIAFGGVVQAGESYLQ---------NAQRELEEELGI--DGVQ--- 62

Query: 83  FTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKAD 142
            TPLG   Y    +  WG+     +   V D  +    +EV E  +++  ++ +     +
Sbjct: 63  LTPLGLFYYDTDGNRVWGK-----VFSCVYDGPLKLQEEEVEEITWLSINEILQFKEGEN 117

Query: 143 AGEEGLK 149
              + L 
Sbjct: 118 ITPDSLS 124

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 126

>gnl|CDD|215425 PLN02791, PLN02791, Nudix hydrolase homolog

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 18/126 (14%)

Query: 23  QQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 82
           Q+R+  K ++P  W  +   H    ++ L+         +AQR+L +ELGI    +P D 
Sbjct: 50  QRRADCKDSWPGQWDISSAGHISAGDTSLL---------SAQRELEEELGI---ILPKDA 97

Query: 83  FTPLGRILYK-APSDGKWGEHELD--YLLFIVRDVSVNP---NPDEVAEYKYVNREQLKE 136
           F  L   L +   +DGK+  +E +  YL+  +  + +        EV+  KY++ E+ K 
Sbjct: 98  FELLFVFLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKS 157

Query: 137 LLRKAD 142
            L K D
Sbjct: 158 ALAKED 163

Length = 770

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	187
PLN02552	247	isopentenyl-diphosphate delta-isomerase	100.0
KOG0142	225	consensus Isopentenyl pyrophosphate:dimethylallyl	100.0
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	100.0
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.97
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.97
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.97
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.96
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.95
PLN02791	770	Nudix hydrolase homolog	99.94
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.92
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.92
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.92
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.88
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.86
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.84
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.84
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.84
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.83
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.83
PLN02839	372	nudix hydrolase	99.83
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.82
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.82
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.82
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.82
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.82
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.81
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.81
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.81
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.81
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.8
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.79
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.79
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.79
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.79
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.79
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.79
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.78
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.77
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.77
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.77
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.77
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.76
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.75
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.75
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.75
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.73
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.72
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.72
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.72
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.72
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.71
PLN02325	144	nudix hydrolase	99.71
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.71
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.71
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.71
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.71
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.7
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.69
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.69
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.69
PRK10707	190	putative NUDIX hydrolase; Provisional	99.68
PLN02709	222	nudix hydrolase	99.68
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.68
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.67
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.65
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.64
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.63
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.62
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.62
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.61
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.61
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.6
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.51
PRK08999	312	hypothetical protein; Provisional	99.5
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.49
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	99.46
KOG4313	306	consensus Thiamine pyrophosphokinase [Nucleotide t	99.45
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.44
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.38
KOG3069	246	consensus Peroxisomal NUDIX hydrolase [Replication	99.33
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.32
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.32
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.27
KOG3084	345	consensus NADH pyrophosphatase I of the Nudix fami	99.23
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	99.21
PLN03143	291	nudix hydrolase; Provisional	99.18
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.18
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.08
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	99.04
KOG2839	145	consensus Diadenosine and diphosphoinositol polyph	98.94
KOG0648	295	consensus Predicted NUDIX hydrolase FGF-2 and rela	98.52
KOG3041	225	consensus Nucleoside diphosphate-sugar hydrolase o	98.52
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	98.24
COG4112	203	Predicted phosphoesterase (MutT family) [General f	98.19
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	98.06
PF14443	126	DBC1: DBC1	96.2
KOG4195	275	consensus Transient receptor potential-related cha	95.81
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	95.44
PRK10880	350	adenine DNA glycosylase; Provisional	95.37
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	89.36
KOG1689	221	consensus mRNA cleavage factor I subunit [RNA proc	86.99
KOG4548	263	consensus Mitochondrial ribosomal protein L17 [Tra	83.41

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=100.00  E-value=2.2e-40  Score=274.69  Aligned_cols=180  Identities=71%  Similarity=1.147  Sum_probs=155.4

Q ss_pred             CCCCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCCh--------hhhhhhhcHHHHHHHHHHHHhCC
Q 029829            2 HKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESE--------LIEENALGVRNAAQRKLLDELGI   73 (187)
Q Consensus         2 ~g~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~--------~~~~~~~~~~~Aa~REl~EE~Gl   73 (187)
                      +|++||+|+|+|+|++|+||||||+..|.+|||+|+++||||+.+||++        +.+++.+|+.+||+||+.|||||
T Consensus        52 ~gl~Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI  131 (247)
T PLN02552         52 RGLLHRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGI  131 (247)
T ss_pred             CCceEEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCC
Confidence            6899999999999999999999999999999999999999999998652        22333445789999999999999


Q ss_pred             CccCCCCCCeeeeeEEEEEccCC------CCcceeEEEEEEEEec--CCcCCCCccccceEEEecHHHHHHHHHhccCCC
Q 029829           74 CAEDVPVDEFTPLGRILYKAPSD------GKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELLRKADAGE  145 (187)
Q Consensus        74 ~~~~~~~~~l~~~~~~~y~~~~~------~~~~e~e~~~vf~~~~--~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~  145 (187)
                      .+..+++.++.+++++.|..+..      +.+.+++++++|+...  ..++.+|++||.+++|++++++.+++.+.    
T Consensus       132 ~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~l~lq~eEV~~~~wvs~~el~~~~~~~----  207 (247)
T PLN02552        132 PAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVNPNPDEVADVKYVNREELKEMMRKE----  207 (247)
T ss_pred             CccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEecCCCcccCCHHHhheEEEEeHHHHHHHHhhc----
Confidence            98766655678889888887654      5566788988877632  34788999999999999999999998854    


Q ss_pred             CCcccChhHHHHHHHHHHHHHhHhcccccccccCCCceeecC
Q 029829          146 EGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT  187 (187)
Q Consensus       146 ~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  187 (187)
                      .+..+|||++.++++|+..||+++++.  .++++|+.||||.
T Consensus       208 ~~~~~tpw~~~~~~~~l~~w~~~~~~~--~~~~~~~~i~~~~  247 (247)
T PLN02552        208 SGLKLSPWFRLIVDNFLMKWWDDLEKG--TEAVDMKTIHKLM  247 (247)
T ss_pred             CCcccCHHHHHHHHHHHHHHHhhhcch--hhccChhhheecC
Confidence            368899999999999999999999999  9999999999983

>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=4.3e-40  Score=260.04  Aligned_cols=178  Identities=58%  Similarity=1.005  Sum_probs=165.1

Q ss_pred             CCCCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 029829            2 HKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD   81 (187)
Q Consensus         2 ~g~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~   81 (187)
                      .|++||||||++||++|++||||||..|.+|||.|.++||+|+......+.+.++.|+..||+|.|.-|+||+...++.+
T Consensus        48 kglLHRaFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pe  127 (225)
T KOG0142|consen   48 KGLLHRAFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPE  127 (225)
T ss_pred             hhhhhheeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHH
Confidence            57999999999999999999999999999999999999999999655555677789999999999999999999999888


Q ss_pred             CeeeeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 029829           82 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF  161 (187)
Q Consensus        82 ~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~  161 (187)
                      +++++++++|.++.+..|+|||++|+++.+.+.++.||++||++++||+.+++.+++++.+     ..||||++.|.++|
T Consensus       128 e~~~ltrihYkA~sdg~wGEhEiDYiL~~~~~~~~nPnpnEv~e~ryvs~eelkel~~~~~-----~~~TPWfkli~~~~  202 (225)
T KOG0142|consen  128 EFNFLTRIHYKAPSDGIWGEHEIDYILFLVKDVTLNPNPNEVSEIRYVSREELKELVAKAS-----AGFTPWFKLISENF  202 (225)
T ss_pred             HcccceeeeeecCCCCCcccceeeEEEEEeccCCCCCChhhhhHhheecHHHHHHHHhccc-----cCCChHHHHHHHHH
Confidence            9999999999999999999999999999998999999999999999999999999999874     46999999999999


Q ss_pred             HHHHHhHhcccccccccCCCceeec
Q 029829          162 LFKWWDHLEKGTLNEVIDMKTIHKL  186 (187)
Q Consensus       162 l~~~~~~~~~~~~~~~~~~~~~~~~  186 (187)
                      |+.||+.+++.  .++.+++.||++
T Consensus       203 l~~WW~~l~~~--~~~~~~~~i~r~  225 (225)
T KOG0142|consen  203 LFKWWDDLDKL--TEFEEDTNIHRL  225 (225)
T ss_pred             HHHHHhhhccc--ccCccccccccC
Confidence            99999999975  467779999985

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=100.00  E-value=9.3e-36  Score=231.28  Aligned_cols=145  Identities=36%  Similarity=0.542  Sum_probs=134.8

Q ss_pred             CCCC-CceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCC
Q 029829            1 MHKC-VPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVP   79 (187)
Q Consensus         1 ~~g~-~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~   79 (187)
                      |++. +|||||++|||.+|++||+||+..|.+|||.|+|+||||+.+||+         ...||+|.+.+|+||++..  
T Consensus        27 ~d~~~LHrAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es---------~~~A~~rRl~~ELGie~~~--   95 (185)
T COG1443          27 GDTPRLHRAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGES---------NEDAARRRLAYELGIEPDQ--   95 (185)
T ss_pred             cccHHHHhhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCc---------hHHHHHHHHHHHhCCCCcc--
Confidence            4566 799999999999999999999999999999999999999999999         7999999999999999986  


Q ss_pred             CCCeeeeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHH
Q 029829           80 VDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVD  159 (187)
Q Consensus        80 ~~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~  159 (187)
                      .+.+.++.+|+|+++..++++|+|+|+|++++.+..+.+|++||.+++|++++++.+++...     +..||||++++..
T Consensus        96 ~d~~~il~rf~YrA~~~~~~~E~Eic~V~~~~~~~~~~~npdEV~~~~wv~~e~l~~~~~~~-----~~~fsPW~~~~~~  170 (185)
T COG1443          96 YDKLEILPRFRYRAADPDGIVENEICPVLAARLDSALDPNPDEVMDYRWVSPEDLKEMVDAT-----PWAFSPWFVIQAE  170 (185)
T ss_pred             cCccccccceEEeccCCCCcceeeeeeEEEEeecCCCCCChHHhhheeccCHHHHHHhhcCC-----ceeeChHHHHHhc
Confidence            34567889999999999999999999999999877889999999999999999999999986     4689999999999


Q ss_pred             HH
Q 029829          160 NF  161 (187)
Q Consensus       160 ~~  161 (187)
                      ++
T Consensus       171 ~~  172 (185)
T COG1443         171 ND  172 (185)
T ss_pred             ch
Confidence            88

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.97  E-value=1.5e-29  Score=197.17  Aligned_cols=135  Identities=46%  Similarity=0.734  Sum_probs=113.1

Q ss_pred             CCCCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 029829            2 HKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD   81 (187)
Q Consensus         2 ~g~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~   81 (187)
                      .|++|++|+++|+|++|+|||+||+.++..+||+|++|+|||+++||+           +||+||+.|||||++...+  
T Consensus        23 ~g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE~-----------eaa~REl~EE~Gl~~~~~~--   89 (158)
T TIGR02150        23 ETPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGEL-----------EAAIRRLREELGIPADDVP--   89 (158)
T ss_pred             CCCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCcccH-----------HHHHHHHHHHHCCCccccc--
Confidence            599999999999999999999999999999999999999999999984           9999999999999987643  


Q ss_pred             CeeeeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHH
Q 029829           82 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLV  157 (187)
Q Consensus        82 ~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~  157 (187)
                       +..++.+.|.....++  .++++++|.+..+..+.++++|+++++|++++++.+++...     ++.+|||++++
T Consensus        90 -l~~~~~~~~~~~~~~g--~~~~~~~f~~~~~~~~~~~~~Ev~~~~W~~~~el~~~~~~~-----~~~~~p~~~~~  157 (158)
T TIGR02150        90 -LTVLPRFSYRARDAWG--EHELCPVFFARAPVPLNPNPEEVAEYRWVSLEELKEILKAP-----WAGFSPWFRIQ  157 (158)
T ss_pred             -eEEcceEEEEEecCCC--cEEEEEEEEEecCCcccCChhHeeeEEEeCHHHHHHHHhcC-----ccccCHhhHHh
Confidence             3345555565433222  35677888887655677787899999999999999999975     57999999875

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.97  E-value=2.2e-29  Score=197.21  Aligned_cols=140  Identities=46%  Similarity=0.790  Sum_probs=116.8

Q ss_pred             CCCCC-ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCC
Q 029829            1 MHKCV-PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVP   79 (187)
Q Consensus         1 ~~g~~-h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~   79 (187)
                      ++|++ |++|+++|+|++|+|||+||+..+..|||.|++++|||+++||+         +++||+||++|||||.+....
T Consensus        24 ~~~~~~~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt---------~~eaa~REl~EEtGl~~~~~~   94 (165)
T cd02885          24 LKGTLLHRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEG---------VKDAAQRRLREELGITGDLLE   94 (165)
T ss_pred             hcCCcceeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCC---------HHHHHHHHHHHHhCCCccchh
Confidence            35777 99999999999999999999998889999999999999999999         899999999999999987543


Q ss_pred             CCCeeeeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHH
Q 029829           80 VDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVV  158 (187)
Q Consensus        80 ~~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~  158 (187)
                      .   . ++.+.|..........+.+.++|.+.......++.+|+.+++|++++++.+++.++     ++.+|||++.++
T Consensus        95 ~---~-~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~Ev~~~~w~~~~el~~~~~~~-----~~~~~~~~~~~~  164 (165)
T cd02885          95 L---V-LPRFRYRAPDDGGLVEHEIDHVFFARADVTLIPNPDEVSEYRWVSLEDLKELVAAA-----PEAFTPWFRLIL  164 (165)
T ss_pred             h---c-cceEEEEEEcCCCceeeEEEEEEEEEeCCCCCCCccceeEEEEECHHHHHHHHHhC-----chhcCHHHHHHh
Confidence            2   1 35666665443344445677888877655556678899999999999999999986     589999999875

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.97  E-value=4.4e-29  Score=198.96  Aligned_cols=143  Identities=29%  Similarity=0.456  Sum_probs=118.2

Q ss_pred             CCCCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 029829            2 HKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD   81 (187)
Q Consensus         2 ~g~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~   81 (187)
                      +|++|++|+|+|+|++|+|||+||+.++..+||.|++++|||+++||+         +.+||+||+.|||||++....  
T Consensus        30 ~~~~h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt---------~~~aa~REl~EEtGl~~~~~~--   98 (184)
T PRK03759         30 DTPLHLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGES---------LEDAVIRRCREELGVEITDLE--   98 (184)
T ss_pred             CCCeeeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCC---------HHHHHHHHHHHHhCCCccccc--
Confidence            689999999999999999999999988889999999999999999999         899999999999999886432  


Q ss_pred             CeeeeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 029829           82 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF  161 (187)
Q Consensus        82 ~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~  161 (187)
                        ..++.+.|.....++...++++++|.+.....+.++++|+.+++|++++++.+++.++     +..++||+++++.++
T Consensus        99 --~~~~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~~~~~Ev~~~~W~~~~el~~~i~~~-----~~~~~~~l~~~~~~~  171 (184)
T PRK03759         99 --LVLPDFRYRATDPNGIVENEVCPVFAARVTSALQPNPDEVMDYQWVDPADLLRAVDAT-----PWAFSPWMVLQAANL  171 (184)
T ss_pred             --cccceEEEEEecCCCceeeEEEEEEEEEECCCCCCChhHeeeEEEECHHHHHHHHHhC-----CcccChHHHHHHHHh
Confidence              1244444543332333345677888887655667788899999999999999999986     579999999988765


Q ss_pred             H
Q 029829          162 L  162 (187)
Q Consensus       162 l  162 (187)
                      .
T Consensus       172 ~  172 (184)
T PRK03759        172 E  172 (184)
T ss_pred             c
Confidence            3

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.96  E-value=3.8e-29  Score=198.30  Aligned_cols=146  Identities=18%  Similarity=0.205  Sum_probs=119.5

Q ss_pred             CCCCCceEEEEE--EEeCC--CeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 029829            1 MHKCVPNIFSIL--GFVSY--SVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE   76 (187)
Q Consensus         1 ~~g~~h~av~v~--i~~~~--g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~   76 (187)
                      .+|++|++|+|+  ++|++  ++||+||||.+|.+|||+|++++|||+++||+         +.+||+||++|||||++.
T Consensus        27 ~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~---------~~~aA~REl~EE~Gl~~~   97 (180)
T cd03676          27 LFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEG---------PEETLVKECDEEAGLPED   97 (180)
T ss_pred             cCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCC---------HHHHHHHHHHHHhCCCHH
Confidence            369999999976  55765  89999999999999999999999999999999         899999999999999887


Q ss_pred             CCCCCCeeeeeEEEEEccCCCCcceeEEEEEEEEecC--CcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhH
Q 029829           77 DVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD--VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWF  154 (187)
Q Consensus        77 ~~~~~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~--~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~  154 (187)
                      ...  .+.+++.+.|.+...+....++++|+|.+..+  ..+.++++|+.++.|++++++.+++..+       .|+||+
T Consensus        98 ~~~--~l~~~g~~~~~~~~~~~~~~~e~~~~f~~~~~~~~~~~~~~~Ev~~~~~~~~~el~~~l~~g-------~~~~~~  168 (180)
T cd03676          98 LVR--QLKPVGVVSYLREGEAGGLQPEVEYVYDLELPPDFIPAPQDGEVESFRLLTIDEVLRALKEG-------EFKPNC  168 (180)
T ss_pred             HHh--hceeccEEEEEEEcCCCcEeeeEEEEEEEEcCCCCeeCCCCCcEeEEEEECHHHHHHHHHcC-------CCCccc
Confidence            543  14556766666542222334678888877643  3456788999999999999999999975       799999


Q ss_pred             HHHHHHHHHH
Q 029829          155 RLVVDNFLFK  164 (187)
Q Consensus       155 ~~~~~~~l~~  164 (187)
                      .++.-+||.+
T Consensus       169 ~lv~~~~~~~  178 (180)
T cd03676         169 ALVTLDFLIR  178 (180)
T ss_pred             HhHHHHHHhh
Confidence            9999988764

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.95  E-value=1.6e-27  Score=182.45  Aligned_cols=135  Identities=21%  Similarity=0.246  Sum_probs=108.3

Q ss_pred             CceEEEEEEEeCC---CeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 029829            5 VPNIFSILGFVSY---SVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD   81 (187)
Q Consensus         5 ~h~av~v~i~~~~---g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~   81 (187)
                      +||+|+|+|+|.+   ++||+|+|+..+..+||.|++++|||+++||+         +.+||+||+.|||||.+...   
T Consensus         1 ~h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt---------~~~aa~REl~EEtGl~~~~~---   68 (144)
T cd04692           1 WHRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGET---------PLEDGIRELEEELGLDVSAD---   68 (144)
T ss_pred             CceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCC---------HHHHHHHHHHHHhCCCCChH---
Confidence            6999999999988   89999999998889999999988999999999         89999999999999987532   


Q ss_pred             CeeeeeEEEEEccCCCCcceeEEEEEEEEecC---CcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHH
Q 029829           82 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRD---VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRL  156 (187)
Q Consensus        82 ~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~---~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~  156 (187)
                      .+.+++.+.+..........+.++++|++...   ..+.++++|+.+++|++++++.+++..+     +.+|+||+-.
T Consensus        69 ~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~-----~~~~~~~~~~  141 (144)
T cd04692          69 DLIPLGTFKIEYDHIGKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELLEEE-----DHKYQYYDGE  141 (144)
T ss_pred             HeEEeeEEEEeccccCCCccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHHHcC-----CCCCCccccc
Confidence            34567776655431112222446667776542   3456777899999999999999999887     5899999753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PLN02791 Nudix hydrolase homolog

Probab=99.94  E-value=2e-26  Score=215.06  Aligned_cols=143  Identities=22%  Similarity=0.313  Sum_probs=116.9

Q ss_pred             CCCCceEEEEEEEeC-CCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCC
Q 029829            2 HKCVPNIFSILGFVS-YSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV   80 (187)
Q Consensus         2 ~g~~h~av~v~i~~~-~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~   80 (187)
                      +|++|++|+|+|+|. +|+|||||||..|.+|||+|+++||||+++||+         +.+||+||+.||+||.+..   
T Consensus        28 ~Gl~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs---------~~eAA~REL~EELGI~l~~---   95 (770)
T PLN02791         28 DGDYHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDT---------SLLSAQRELEEELGIILPK---   95 (770)
T ss_pred             CCCceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCC---------HHHHHHHHHHHHhCCCCCh---
Confidence            689999999999996 699999999999999999999999999999999         7899999999999998632   


Q ss_pred             CCeeeeeEEEEEcc-CCCCcceeEEEEEEEEecC-----CcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChh-
Q 029829           81 DEFTPLGRILYKAP-SDGKWGEHELDYLLFIVRD-----VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPW-  153 (187)
Q Consensus        81 ~~l~~~~~~~y~~~-~~~~~~e~e~~~vf~~~~~-----~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~-  153 (187)
                      ..+.+++.+.+... ..+.+.+++++++|++...     .++.+|++||++++|++++|+.+++...     +..|+|| 
T Consensus        96 ~~l~~l~~~~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~l~~~-----~~~fvP~~  170 (770)
T PLN02791         96 DAFELLFVFLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSALAKE-----DPAYVPYD  170 (770)
T ss_pred             hheeeeeeEEEEeeccCCCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHHHhcC-----CCceeecc
Confidence            23566776555432 2234567899999987631     2467889999999999999999999875     4678887 


Q ss_pred             --------HHHHHHHH
Q 029829          154 --------FRLVVDNF  161 (187)
Q Consensus       154 --------~~~~~~~~  161 (187)
                              +..+.++|
T Consensus       171 ~~~~~~~~f~~i~~~~  186 (770)
T PLN02791        171 VNGEYGQLFSIIEKRY  186 (770)
T ss_pred             ccchHHHHHHHHHHHH
Confidence                    55555555

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.92  E-value=2.9e-24  Score=170.81  Aligned_cols=136  Identities=17%  Similarity=0.138  Sum_probs=108.5

Q ss_pred             CCCCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 029829            2 HKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD   81 (187)
Q Consensus         2 ~g~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~   81 (187)
                      +|+.|+++.++|+|++|+|||++|+..+..+||+|+.++|||+++||+         +.+||+|||+|||||.+...   
T Consensus        33 ~~~~h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs---------~~eAA~REL~EEtGl~~~~~---  100 (180)
T PRK15393         33 QCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQ---------LLESARREAEEELGIAGVPF---  100 (180)
T ss_pred             CCCceEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCC---------HHHHHHHHHHHHHCCCCccc---
Confidence            689999999999999999999999988778899999888999999999         89999999999999986542   


Q ss_pred             CeeeeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 029829           82 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF  161 (187)
Q Consensus        82 ~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~  161 (187)
                        ..++.+.|....    . ..++++|.+.......++++|+.+++|++++++.+++.         .|+|.....+..|
T Consensus       101 --~~~~~~~~~~~~----~-~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~---------~~~~~~~~~l~~~  164 (180)
T PRK15393        101 --AEHGQFYFEDEN----C-RVWGALFSCVSHGPFALQEEEVSEVCWMTPEEITARCD---------EFTPDSLKALALW  164 (180)
T ss_pred             --eeceeEEecCCC----c-eEEEEEEEEEeCCCCCCChHHeeEEEECCHHHHhhhhh---------hcCccHHHHHHHH
Confidence              345665444321    1 23445565555556677889999999999999998754         4888888888878


Q ss_pred             HHHH
Q 029829          162 LFKW  165 (187)
Q Consensus       162 l~~~  165 (187)
                      |.+-
T Consensus       165 l~~~  168 (180)
T PRK15393        165 LTRN  168 (180)
T ss_pred             HHhh
Confidence            5443

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.92  E-value=1.3e-24  Score=162.79  Aligned_cols=116  Identities=24%  Similarity=0.262  Sum_probs=95.7

Q ss_pred             eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829            7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL   86 (187)
Q Consensus         7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~   86 (187)
                      ++|+|+++|++|+||||+|+..+..+||+|++++|||+++||+         +.+||+||+.||||+++..     +..+
T Consensus         1 ~~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~---------~~~aa~REl~EEtGl~~~~-----l~~~   66 (126)
T cd04697           1 RATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGES---------YLQNAQRELEEELGIDGVQ-----LTPL   66 (126)
T ss_pred             CeEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCC---------HHHHHHHHHHHHHCCCccc-----cEEe
Confidence            5899999999999999999988878999999988999999999         8999999999999998863     3456


Q ss_pred             eEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhc
Q 029829           87 GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKA  141 (187)
Q Consensus        87 ~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~  141 (187)
                      +.+.|....    . ....++|.+.....+.++++|+.+++|++++++.+++..+
T Consensus        67 ~~~~~~~~~----~-~~~~~~f~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~  116 (126)
T cd04697          67 GLFYYDTDG----N-RVWGKVFSCVYDGPLKLQEEEVEEITWLSINEILQFKEGE  116 (126)
T ss_pred             eEEEecCCC----c-eEEEEEEEEEECCCCCCCHhHhhheEEcCHHHHHHHhhcC
Confidence            665553321    1 3345677776555566778899999999999999998875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.92  E-value=2.9e-24  Score=160.52  Aligned_cols=124  Identities=24%  Similarity=0.368  Sum_probs=97.0

Q ss_pred             eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829            7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL   86 (187)
Q Consensus         7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~   86 (187)
                      ++|.++++|++|+|||+||+..+..+||.|++|+|||+++||+         + +||+||++||||+.+....   +..+
T Consensus         1 ~~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~---------~-~aa~REl~EEtGl~~~~~~---~~~~   67 (127)
T cd04693           1 LVVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGET---------S-TAAEREVKEELGLELDFSE---LRPL   67 (127)
T ss_pred             CeEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCC---------H-HHHHHHHHHHhCCCcChhh---cEEE
Confidence            4789999999999999999988888999999999999999999         9 9999999999999986432   3445


Q ss_pred             eEEEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHH
Q 029829           87 GRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRL  156 (187)
Q Consensus        87 ~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~  156 (187)
                      +.+.|..+   +   +...++|.+.. ...+.++.+|+.+++|++++++.+++.++       .++||+..
T Consensus        68 ~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~-------~~~~~~~~  125 (127)
T cd04693          68 FRYFFEAE---G---FDDYYLFYADVEIGKLILQKEEVDEVKFVSKDEIDGLIGHG-------EFTPYFES  125 (127)
T ss_pred             EEEEeecC---C---eEEEEEEEecCcccccccCHHHhhhEEEeCHHHHHHHHhcC-------Cccccccc
Confidence            55433321   1   22234444433 34556777899999999999999999875       68888754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.88  E-value=1.2e-21  Score=149.17  Aligned_cols=130  Identities=17%  Similarity=0.136  Sum_probs=88.7

Q ss_pred             CceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCee
Q 029829            5 VPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT   84 (187)
Q Consensus         5 ~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~   84 (187)
                      .+|+|++.+++.+|+|||+||+..+..+||.|++| ||++++||+         +.+||.||+.|||||.+....+....
T Consensus         2 ~~r~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~~~~~~~   71 (141)
T PRK15472          2 RQRTIVCPLIQNDGAYLLCKMADDRGVFPGQWALS-GGGVEPGER---------IEEALRREIREELGEQLLLTEITPWT   71 (141)
T ss_pred             cceeEEEEEEecCCEEEEEEecccCCCCCCceeCC-cccCCCCCC---------HHHHHHHHHHHHHCCceeeeeecccc
Confidence            57899999998899999999998777899999998 589999999         89999999999999987532211111


Q ss_pred             eeeEEEE-EccCCCCcceeEEEE---EEEEec-CCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHH
Q 029829           85 PLGRILY-KAPSDGKWGEHELDY---LLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVD  159 (187)
Q Consensus        85 ~~~~~~y-~~~~~~~~~e~e~~~---vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~  159 (187)
                      +.+...+ .++.  +.. ....+   +|.+.. +..+.++ +|+.+++|++++++.++           .+.|..+.++.
T Consensus        72 ~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~-~E~~~~~w~~~~el~~l-----------~~~~~~~~~~~  136 (141)
T PRK15472         72 FRDDIRTKTYAD--GRK-EEIYMIYLIFDCVSANRDVKIN-EEFQDYAWVKPEDLVHY-----------DLNVATRKTLR  136 (141)
T ss_pred             ccccceeEEecC--CCc-eeEEEEEEEEEeecCCCcccCC-hhhheEEEccHHHhccc-----------cccHHHHHHHH
Confidence            1111111 1111  111 12222   233333 3344444 79999999999999865           46666666554

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.86  E-value=1.6e-20  Score=144.02  Aligned_cols=133  Identities=14%  Similarity=0.078  Sum_probs=92.9

Q ss_pred             CCCCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 029829            2 HKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD   81 (187)
Q Consensus         2 ~g~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~   81 (187)
                      .-..+.+|+++++|.+|+|||+||+.    .||.|++| |||+++||+         +.+||+||++|||||.+....+ 
T Consensus         3 ~~~~~~~v~~vi~~~~~~vLl~~r~~----~~~~W~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~~~-   67 (148)
T PRK09438          3 PYKRPVSVLVVIYTPDLGVLMLQRAD----DPDFWQSV-TGSLEEGET---------PAQTAIREVKEETGIDVLAEQL-   67 (148)
T ss_pred             CccCceEEEEEEEeCCCeEEEEEecC----CCCcEeCC-cccCCCCCC---------HHHHHHHHHHHHhCcCccccce-
Confidence            34466799999999999999998864    37899987 689999999         8999999999999998832111 


Q ss_pred             Ceeeee---EEEEEc------cCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccCh
Q 029829           82 EFTPLG---RILYKA------PSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP  152 (187)
Q Consensus        82 ~l~~~~---~~~y~~------~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p  152 (187)
                        ..++   ...|..      ....+.. +..+++|++.......++.+|+.+++|++++++.++           .+.|
T Consensus        68 --~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~e~~~~-----------~~~~  133 (148)
T PRK09438         68 --TLIDCQRSIEYEIFPHWRHRYAPGVT-RNTEHWFCLALPHERPVVLTEHLAYQWLDAREAAAL-----------TKSW  133 (148)
T ss_pred             --eecccccccccccchhhhhccccccC-CceeEEEEEecCCCCccccCcccceeeCCHHHHHHH-----------hcCh
Confidence              1111   111111      0111222 456678887653333344569999999999999986           4567


Q ss_pred             hHHHHHHHHHH
Q 029829          153 WFRLVVDNFLF  163 (187)
Q Consensus       153 ~~~~~~~~~l~  163 (187)
                      ..+.+++.++.
T Consensus       134 ~~~~~l~~~~~  144 (148)
T PRK09438        134 SNAEAIEQLVI  144 (148)
T ss_pred             hHHHHHHHHHH
Confidence            77888877643

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.84  E-value=9.9e-20  Score=139.95  Aligned_cols=124  Identities=20%  Similarity=0.301  Sum_probs=90.9

Q ss_pred             eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829            7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL   86 (187)
Q Consensus         7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~   86 (187)
                      .+|+|+++|.+|+|||+||+..+..|||+|++| |||+++||+         +.+||+||+.||+|+.+..... ..+++
T Consensus         2 ~~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~P-gG~v~~~E~---------~~~aa~RE~~EE~gi~~~~~~~-~~~~l   70 (143)
T cd04694           2 VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPP-GGHVELGEN---------LLEAGLRELNEETGLTLDPIDK-SWQVL   70 (143)
T ss_pred             cEEEEEEEcCCCEEEEEEECCCCCCCCCeEECc-ccccCCCCC---------HHHHHHHHHHHHHCCCcccccc-ceeEE
Confidence            478999999999999999998777899999998 699999998         8999999999999998864321 12445


Q ss_pred             eEEEEEccC--CCCc--ceeEEEEEEEEecC------CcCCCCccccceEEEecHHHHHHHHHhc
Q 029829           87 GRILYKAPS--DGKW--GEHELDYLLFIVRD------VSVNPNPDEVAEYKYVNREQLKELLRKA  141 (187)
Q Consensus        87 ~~~~y~~~~--~~~~--~e~e~~~vf~~~~~------~~~~~~~~Ev~~~~Wv~~~el~~~l~~~  141 (187)
                      +.+.+..+.  ..+.  .++...|++.....      ..+.++++|+.+++|++++++.+++...
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~~~~~  135 (143)
T cd04694          71 GLWESVYPPLLSRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAVVSAE  135 (143)
T ss_pred             eeeccccccccCCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHHHHhh
Confidence            544333221  1111  22334454443321      1345777999999999999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.84  E-value=1.4e-20  Score=139.79  Aligned_cols=120  Identities=25%  Similarity=0.334  Sum_probs=92.0

Q ss_pred             CceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCee
Q 029829            5 VPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT   84 (187)
Q Consensus         5 ~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~   84 (187)
                      +|++|+++|++.+|+|||+||+.....++|.|.+| ||+++++|+         +.+||+||+.||||+.+...     .
T Consensus         1 ~~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~p-gG~i~~~E~---------~~~aa~REl~EE~g~~~~~~-----~   65 (134)
T PF00293_consen    1 WRRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELP-GGGIEPGES---------PEEAARRELKEETGLDVSPL-----E   65 (134)
T ss_dssp             EEEEEEEEEEETTTEEEEEEESTTSSSSTTEEESS-EEEECTTSH---------HHHHHHHHHHHHHSEEEEEE-----E
T ss_pred             CCCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecc-eeeEEcCCc---------hhhhHHhhhhhcccceeccc-----c
Confidence            58999999999999999999998776789999996 799999998         89999999999999998432     3


Q ss_pred             eeeEEEEEccCCCCcceeEEEEEEEEe--cC-CcCCCCccccceEEEecHHHHHHHHHhc
Q 029829           85 PLGRILYKAPSDGKWGEHELDYLLFIV--RD-VSVNPNPDEVAEYKYVNREQLKELLRKA  141 (187)
Q Consensus        85 ~~~~~~y~~~~~~~~~e~e~~~vf~~~--~~-~~~~~~~~Ev~~~~Wv~~~el~~~l~~~  141 (187)
                      ..+.+.|........  ....++|.+.  .+ ....++.+|+.++.|++++++.++....
T Consensus        66 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~  123 (134)
T PF00293_consen   66 LLGLFSYPSPSGDPE--GEIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNG  123 (134)
T ss_dssp             EEEEEEEEETTTESS--EEEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTT
T ss_pred             cceeeeecccCCCcc--cEEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCc
Confidence            455555665543221  2233333333  22 2455565699999999999999988764

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.84  E-value=2.4e-20  Score=144.95  Aligned_cols=113  Identities=19%  Similarity=0.043  Sum_probs=85.1

Q ss_pred             CceEEEEEEEeCC--CeEEEEEecCCCCCCCCceeeccccCCCCC-CChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 029829            5 VPNIFSILGFVSY--SVMSGQQRSGTKVTFPLVWTNTCCSHPLYR-ESELIEENALGVRNAAQRKLLDELGICAEDVPVD   81 (187)
Q Consensus         5 ~h~av~v~i~~~~--g~vLL~rRs~~k~~~pG~W~~~~gGhve~g-Es~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~   81 (187)
                      +|.||.|++++.+  ++|||+||+..+..+||.|++| ||++++| |+         +.+||+||++||||+++...   
T Consensus         1 ~~~av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lP-GG~ve~gdEs---------~~eaa~REl~EEtGl~~~~~---   67 (157)
T cd03426           1 RRAAVLVLLVEREGELRVLLTKRASHLRSHPGQVAFP-GGKVDPGDED---------PVATALREAEEEIGLPPDSV---   67 (157)
T ss_pred             CceEEEEEEEeCCCceEEEEEEcccccccCCCcEECC-CCCcCCCcCC---------HHHHHHHHHHHHhCCCccce---
Confidence            4789999999876  5899999998877899999997 7999999 99         89999999999999988643   


Q ss_pred             CeeeeeEEEEEccCCCCcceeEEEEEEEEec--CCcCCCCccccceEEEecHHHHHHH
Q 029829           82 EFTPLGRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        82 ~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~--~~~~~~~~~Ev~~~~Wv~~~el~~~  137 (187)
                        .+++.+.......     ....++|++..  +..+.++++|+.+++|++++++.+.
T Consensus        68 --~~l~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  118 (157)
T cd03426          68 --EVLGRLPPYYTRS-----GFVVTPVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLDP  118 (157)
T ss_pred             --EEEEECCCccccC-----CCEEEEEEEEECCCCCCCCCHHHhheeEEEcHHHHhCc
Confidence              3454432111111     11233344433  2356778889999999999999864

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.83  E-value=5.4e-20  Score=136.59  Aligned_cols=111  Identities=15%  Similarity=0.167  Sum_probs=83.0

Q ss_pred             ceEEEEEEEeCCCeEEEEEecCC-CCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCee
Q 029829            6 PNIFSILGFVSYSVMSGQQRSGT-KVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT   84 (187)
Q Consensus         6 h~av~v~i~~~~g~vLL~rRs~~-k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~   84 (187)
                      |.++++++.++ |+|||+||+.. +..|||+|++| ||+++.||+         +.+||.||+.||||+.+....+   .
T Consensus         1 ~~v~~~~~~~~-g~vLl~~r~~~~~~~~~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~~~~~---~   66 (122)
T cd04682           1 SGVALALLIGD-GRLLLQLRDDKPGIPYPGHWDLP-GGHREGGET---------PLECVLRELLEEIGLTLPESRI---P   66 (122)
T ss_pred             CceEEEEEEcC-CEEEEEEccCCCCCCCCCcEeCC-CccccCCCC---------HHHHHHHHHHHHhCCccccccc---c
Confidence            56777777776 99999999876 67899999997 799999999         8999999999999999864321   1


Q ss_pred             eeeEEEEEccCCCCcceeEEEEEEEEecC-C-cCCCCccccceEEEecHHHHHHH
Q 029829           85 PLGRILYKAPSDGKWGEHELDYLLFIVRD-V-SVNPNPDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        85 ~~~~~~y~~~~~~~~~e~e~~~vf~~~~~-~-~~~~~~~Ev~~~~Wv~~~el~~~  137 (187)
                      ..  ..|....     .....++|.+... . ....+.+|+.+++|++++++.+.
T Consensus        67 ~~--~~~~~~~-----~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  114 (122)
T cd04682          67 WF--RVYPSAS-----PPGTEHVFVVPLTAREDAILFGDEGQALRLMTVEEFLAH  114 (122)
T ss_pred             ee--EecccCC-----CCceEEEEEEEEecCCCccccCchhheeecccHHHHhhc
Confidence            22  2233221     1335566666542 2 24567799999999999999765

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.83  E-value=8.9e-20  Score=136.28  Aligned_cols=128  Identities=19%  Similarity=0.154  Sum_probs=89.7

Q ss_pred             eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829            7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL   86 (187)
Q Consensus         7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~   86 (187)
                      .+|.++|++++|++||++|+...  ++|.|++| ||++++||+         +.+||.||+.||||+++...     .++
T Consensus         2 ~av~~~i~~~~~~vLL~~r~~~~--~~~~w~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~~-----~~~   64 (130)
T cd04681           2 AAVGVLILNEDGELLVVRRAREP--GKGTLDLP-GGFVDPGES---------AEEALIREIREETGLKVTEL-----SYL   64 (130)
T ss_pred             ceEEEEEEcCCCcEEEEEecCCC--CCCcEeCC-ceeecCCCC---------HHHHHHHHHHHHhCCcccce-----eEE
Confidence            37899999999999999998643  68999997 799999999         89999999999999988643     345


Q ss_pred             eEEEEEccCCCCcceeEEEEEEEEecC-CcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 029829           87 GRILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL  162 (187)
Q Consensus        87 ~~~~y~~~~~~~~~e~e~~~vf~~~~~-~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l  162 (187)
                      +.+....+.. +...+.+.++|.+... .....+.+|+.+++|++++++..   .       ....|..+..++.||
T Consensus        65 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~---~-------~~~~~~~~~~~~~~~  130 (130)
T cd04681          65 FSLPNTYPYG-GMEYDTLDLFFVCQVDDKPIVKAPDDVAELKWVVPQDIEL---E-------NFAFPSIRQAVERWL  130 (130)
T ss_pred             EeecceeeeC-CceeEEEEEEEEEEeCCCCCcCChHHhheeEEecHHHCCc---c-------cCCcHHHHHHHHhhC
Confidence            5443222222 2222334445555543 33455678999999999999852   1       122255666666653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PLN02839 nudix hydrolase

Probab=99.83  E-value=1.4e-19  Score=156.43  Aligned_cols=145  Identities=17%  Similarity=0.179  Sum_probs=117.9

Q ss_pred             CCCceEEEEEEEe---CCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCC
Q 029829            3 KCVPNIFSILGFV---SYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVP   79 (187)
Q Consensus         3 g~~h~av~v~i~~---~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~   79 (187)
                      |..-.+|++-.+.   .++++|++|||.+|.+|||+||+.++|++..||+         +.++++||+.||.||+...++
T Consensus       200 Gi~tyGVHlNGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGes---------p~etliREa~EEAgLp~~l~~  270 (372)
T PLN02839        200 GIKGYGVHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGIS---------CGENLVKECEEEAGISKAIAD  270 (372)
T ss_pred             CceeEEEEEEEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCC---------HHHHHHHHHHHHcCCCHHHHh
Confidence            5556677776553   2347999999999999999999999999999999         899999999999999876442


Q ss_pred             CCCeeeeeEEEEEccCCCCcceeEEEEEEEEec--CCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHH
Q 029829           80 VDEFTPLGRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLV  157 (187)
Q Consensus        80 ~~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~--~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~  157 (187)
                        .+...|.+.|......+.. ++..|+|....  +..+.++++||+++.+++++|+.+.+.++      +.|+|.+..+
T Consensus       271 --~~~~~G~VsY~~~~~~g~~-~evly~YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~~l~~~------~~fKpn~aLV  341 (372)
T PLN02839        271 --RAIAVGAVSYMDIDQYCFK-RDVLFCYDLELPQDFVPKNQDGEVESFKLIPVAQVANVIRKT------SFFKANCSLV  341 (372)
T ss_pred             --cceEeEEEEEEEEcCCccc-cCEEEEeeeecCCccccCCCccceeEEEEecHHHHHHHHHcC------CCCCcccHHH
Confidence              4678899988855443332 55667776664  34567889999999999999999999875      4699999999


Q ss_pred             HHHHHHHH
Q 029829          158 VDNFLFKW  165 (187)
Q Consensus       158 ~~~~l~~~  165 (187)
                      +-+||.+.
T Consensus       342 iiDFLiRh  349 (372)
T PLN02839        342 IIDFLFRH  349 (372)
T ss_pred             HHHHHHHc
Confidence            99998876

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.82  E-value=3.5e-19  Score=132.64  Aligned_cols=111  Identities=16%  Similarity=0.191  Sum_probs=79.4

Q ss_pred             eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829            7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL   86 (187)
Q Consensus         7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~   86 (187)
                      .+++++|++.+|+|||+||..    ++|.|++| ||++++||+         +.+||+||++||||+++....     ++
T Consensus         3 ~~v~~~i~~~~~~iLL~r~~~----~~~~w~lP-GG~ve~gEs---------~~~aa~REl~EEtGl~~~~~~-----~~   63 (125)
T cd04696           3 VTVGALIYAPDGRILLVRTTK----WRGLWGVP-GGKVEWGET---------LEEALKREFREETGLKLRDIK-----FA   63 (125)
T ss_pred             cEEEEEEECCCCCEEEEEccC----CCCcEeCC-ceeccCCCC---------HHHHHHHHHHHHhCCcccccc-----eE
Confidence            468888999889999998752    67999997 799999999         899999999999999887543     23


Q ss_pred             eEEEEEccCCCCcceeEEEEEEEEecCC-cCCCCccccceEEEecHHHHHHH
Q 029829           87 GRILYKAPSDGKWGEHELDYLLFIVRDV-SVNPNPDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        87 ~~~~y~~~~~~~~~e~e~~~vf~~~~~~-~~~~~~~Ev~~~~Wv~~~el~~~  137 (187)
                      +...|..........+.+.++|.+.... .+..+ +|+.+++|++++++.++
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~W~~~~el~~~  114 (125)
T cd04696          64 MVQEAIFSEEFHKPAHFVLFDFFARTDGTEVTPN-EEIVEWEWVTPEEALDY  114 (125)
T ss_pred             EEEEEeccCCCCCccEEEEEEEEEEecCCcccCC-cccceeEEECHHHHhcC
Confidence            3322322111111124445566665433 34443 79999999999999864

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.82  E-value=3.2e-19  Score=132.70  Aligned_cols=114  Identities=13%  Similarity=0.059  Sum_probs=84.7

Q ss_pred             ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829            6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      |.+++++|++.+|+|||++|+..  ..+|.|++| |||+++||+         +.+||+||++||||+.+...     .+
T Consensus         2 ~~~~~~~i~~~~~~vLL~~r~~~--~~~~~w~lP-gG~ve~gEt---------~~eaa~RE~~EEtGl~~~~~-----~~   64 (125)
T cd04679           2 RVGCGAAILRDDGKLLLVKRLRA--PEAGHWGIP-GGKVDWMEA---------VEDAVVREIEEETGLSIHST-----RL   64 (125)
T ss_pred             ceEEEEEEECCCCEEEEEEecCC--CCCCeEeCC-eeeccCCCC---------HHHHHHHHHHHHHCCCcccc-----eE
Confidence            57899999999999999999753  357999997 799999999         89999999999999998654     33


Q ss_pred             eeEEEEEccCCCCcceeEEEEEEEEec-CCcC-CCCccccceEEEecHHHHHHHHH
Q 029829           86 LGRILYKAPSDGKWGEHELDYLLFIVR-DVSV-NPNPDEVAEYKYVNREQLKELLR  139 (187)
Q Consensus        86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~-~~~~~Ev~~~~Wv~~~el~~~l~  139 (187)
                      ++.+.+.....   ..+.+..+|++.. +..+ ..+++|+.+++|++++++.+.+.
T Consensus        65 ~~~~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~l~  117 (125)
T cd04679          65 LCVVDHIIEEP---PQHWVAPVYLAENFSGEPRLMEPDKLLELGWFALDALPQPLT  117 (125)
T ss_pred             EEEEeecccCC---CCeEEEEEEEEeecCCccccCCCccccEEEEeCHHHCCchhH
Confidence            55443322211   1244566676654 2222 34567999999999999986543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.82  E-value=5.6e-19  Score=138.10  Aligned_cols=119  Identities=11%  Similarity=0.022  Sum_probs=85.3

Q ss_pred             CCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCe
Q 029829            4 CVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF   83 (187)
Q Consensus         4 ~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l   83 (187)
                      ..+.+|.++|++.+|+|||+||+..  .++|.|++| ||++++||+         +++||+||++|||||.+....   .
T Consensus        15 ~~~~~v~~vI~~~~g~VLL~kR~~~--~~~g~W~lP-GG~VE~GEt---------~~~Aa~REl~EEtGl~v~~~~---~   79 (159)
T PRK15434         15 TPLISLDFIVENSRGEFLLGKRTNR--PAQGYWFVP-GGRVQKDET---------LEAAFERLTMAELGLRLPITA---G   79 (159)
T ss_pred             CceEEEEEEEECCCCEEEEEEccCC--CCCCcEECC-ceecCCCCC---------HHHHHHHHHHHHHCCcccccc---c
Confidence            3456899999998899999999843  478999998 799999999         899999999999999865321   1


Q ss_pred             eeeeEEEEEccC---CCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHH
Q 029829           84 TPLGRILYKAPS---DGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        84 ~~~~~~~y~~~~---~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~  137 (187)
                      .+++.+.+.+..   ......+.++++|.+.. ...+.++++|+.+++|++++++.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~g~~~~~~~E~~~~~W~~~~el~~~  137 (159)
T PRK15434         80 QFYGVWQHFYDDNFSGTDFTTHYVVLGFRLRVAEEDLLLPDEQHDDYRWLTPDALLAS  137 (159)
T ss_pred             eEEEEEEeecccccCCCccceEEEEEEEEEEecCCcccCChHHeeEEEEEeHHHhhhc
Confidence            233332222211   11112244556666654 3455666779999999999999864

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.82  E-value=9.7e-19  Score=131.90  Aligned_cols=116  Identities=18%  Similarity=0.097  Sum_probs=88.4

Q ss_pred             CceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCee
Q 029829            5 VPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT   84 (187)
Q Consensus         5 ~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~   84 (187)
                      .|++|.+++++++|++||.+|.... ..++.|++| ||+++.||+         +.+||+||+.||||+.+..     +.
T Consensus         1 ~~~~v~v~~~~~~~~iLl~~~~~~~-~~~~~w~~P-gG~ve~gEs---------~~~aa~RE~~EE~Gl~~~~-----~~   64 (137)
T cd03424           1 HPDAVAVLPYDDDGKVVLVRQYRPP-VGGWLLELP-AGLIDPGED---------PEEAARRELEEETGYEAGD-----LE   64 (137)
T ss_pred             CCCEEEEEEEcCCCeEEEEEeeecC-CCCEEEEeC-CccCCCCCC---------HHHHHHHHHHHHHCCCccc-----eE
Confidence            3789999999999999998765433 367899997 699999999         8999999999999999863     34


Q ss_pred             eeeEEEEEccCCCCcceeEEEEEEEEecCCc---CCCCccccceEEEecHHHHHHHHHhc
Q 029829           85 PLGRILYKAPSDGKWGEHELDYLLFIVRDVS---VNPNPDEVAEYKYVNREQLKELLRKA  141 (187)
Q Consensus        85 ~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~---~~~~~~Ev~~~~Wv~~~el~~~l~~~  141 (187)
                      .++.+.+..    +.. +...++|++.....   +.+++.|+.+++|++++++.+++..+
T Consensus        65 ~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~  119 (137)
T cd03424          65 KLGSFYPSP----GFS-DERIHLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLADG  119 (137)
T ss_pred             EEeeEecCC----ccc-CccEEEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHcC
Confidence            565543321    111 23455666654322   45677899999999999999999975

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.82  E-value=9e-19  Score=133.05  Aligned_cols=131  Identities=21%  Similarity=0.141  Sum_probs=89.4

Q ss_pred             CceEEEEEEEeCC-CeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCe
Q 029829            5 VPNIFSILGFVSY-SVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF   83 (187)
Q Consensus         5 ~h~av~v~i~~~~-g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l   83 (187)
                      .|.+++++++|.+ ++|||+||+.     .|.|.+| |||+++||+         +.+||+||++||||+.+.......+
T Consensus         1 ~~~~~~~~v~~~~~~~vLLv~r~~-----~~~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~~~~~~~   65 (138)
T cd03674           1 GHFTASAFVVNPDRGKVLLTHHRK-----LGSWLQP-GGHIDPDES---------LLEAALRELREETGIELLGLRPLSV   65 (138)
T ss_pred             CcEEEEEEEEeCCCCeEEEEEEcC-----CCcEECC-ceecCCCCC---------HHHHHHHHHHHHHCCCcccceeccc
Confidence            4899999999987 8999998864     4788886 799999999         8999999999999998764322000


Q ss_pred             e-eeeEEEEEccCCCC--cceeEEEEEEEEec-CCcCC-CCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHH
Q 029829           84 T-PLGRILYKAPSDGK--WGEHELDYLLFIVR-DVSVN-PNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVV  158 (187)
Q Consensus        84 ~-~~~~~~y~~~~~~~--~~e~e~~~vf~~~~-~~~~~-~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~  158 (187)
                      . +. .+.........  ...+.++.+|.+.. ...+. ++.+|+.+++|++++++..+           .+.|..+.++
T Consensus        66 ~~~~-~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~-----------~~~~~~~~~i  133 (138)
T cd03674          66 LVDL-DVHPIDGHPKRGVPGHLHLDLRFLAVAPADDVAPPKSDESDAVRWFPLDELASL-----------ELPEDVRRLV  133 (138)
T ss_pred             cccc-eeEeecCCCCCCCCCcEEEEEEEEEEccCccccCCCCCcccccEEEcHHHhhhc-----------cCCHHHHHHH
Confidence            0 00 11111111110  11123445676654 23333 36689999999999999753           4677888888


Q ss_pred             HHHH
Q 029829          159 DNFL  162 (187)
Q Consensus       159 ~~~l  162 (187)
                      .+.|
T Consensus       134 ~~~~  137 (138)
T cd03674         134 EKAL  137 (138)
T ss_pred             HHHh
Confidence            8765

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.81  E-value=9.1e-19  Score=130.21  Aligned_cols=124  Identities=23%  Similarity=0.198  Sum_probs=90.0

Q ss_pred             eEEEEEEEeCC---CeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCe
Q 029829            7 NIFSILGFVSY---SVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF   83 (187)
Q Consensus         7 ~av~v~i~~~~---g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l   83 (187)
                      .++++++++.+   ++|||+||...     |.|++| |||+++||+         +.+||.||+.||||+.+...     
T Consensus         2 ~~a~~ii~~~~~~~~~vLl~~~~~~-----~~w~~P-gG~v~~gEs---------~~~aa~REl~EEtGl~~~~~-----   61 (131)
T cd03673           2 LAAGGVVFRGSDGGIEVLLIHRPRG-----DDWSLP-KGKLEPGET---------PPEAAVREVEEETGIRAEVG-----   61 (131)
T ss_pred             eeEEEEEEEccCCCeEEEEEEcCCC-----CcccCC-CCccCCCCC---------HHHHHHHHHhhhhCCceEec-----
Confidence            46777787765   89999998643     789987 799999999         89999999999999988754     


Q ss_pred             eeeeEEEEEccCCCCcceeEEEEEEEEec-CCcCCC-CccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 029829           84 TPLGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNP-NPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF  161 (187)
Q Consensus        84 ~~~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~-~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~  161 (187)
                      .+++.+.|..+...... +..+++|.+.. +..+.+ +.+|+.+++|++++++.+++.           .|..+.+++.|
T Consensus        62 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~-----------~~~~~~~l~~~  129 (131)
T cd03673          62 DPLGTIRYWFSSSGKRV-HKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDEARDRLS-----------YPNDRELLRAA  129 (131)
T ss_pred             ceEEEEEEeccCCCCCc-ceEEEEEEEEEcCCCcccCCCCcEEEEEEcCHHHHHHHcC-----------CHhHHHHHHHh
Confidence            34666666654322222 44556666654 333333 568999999999999987633           35666766665


Q ss_pred             H
Q 029829          162 L  162 (187)
Q Consensus       162 l  162 (187)
                      +
T Consensus       130 ~  130 (131)
T cd03673         130 L  130 (131)
T ss_pred             h
Confidence            3

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.81  E-value=7.7e-19  Score=134.77  Aligned_cols=116  Identities=13%  Similarity=0.046  Sum_probs=84.0

Q ss_pred             eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829            7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL   86 (187)
Q Consensus         7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~   86 (187)
                      .+|+++|+|.+|+|||+||...  .++|+|.+| ||++++||+         +.+||+||++||||+.+....   ++++
T Consensus        13 v~v~~vI~~~~g~vLl~~R~~~--p~~g~w~lP-GG~ve~gEs---------~~~aa~RE~~EE~Gl~v~~~~---~~~l   77 (144)
T cd03430          13 VSIDLIVENEDGQYLLGKRTNR--PAQGYWFVP-GGRIRKNET---------LTEAFERIAKDELGLEFLISD---AELL   77 (144)
T ss_pred             EEEEEEEEeCCCeEEEEEccCC--CCCCcEECC-CceecCCCC---------HHHHHHHHHHHHHCCCccccc---ceEE
Confidence            4889999999999999999753  479999998 799999999         899999999999999886431   2345


Q ss_pred             eEEEEEccC---CCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHH
Q 029829           87 GRILYKAPS---DGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        87 ~~~~y~~~~---~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~  137 (187)
                      +.+.+....   ..+...+.+..+|.+.. ...+..+++|+.+++|++++++.++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~  132 (144)
T cd03430          78 GVFEHFYDDNFFGDDFSTHYVVLGYVLKLSSNELLLPDEQHSEYQWLTSDELLAD  132 (144)
T ss_pred             EEEEEEeccccccCCCccEEEEEEEEEEEcCCcccCCchhccEeEEecHHHHhcC
Confidence            544322211   11222234445565554 3344556789999999999999853

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.81  E-value=6.8e-19  Score=130.39  Aligned_cols=112  Identities=15%  Similarity=0.038  Sum_probs=82.3

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829            8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG   87 (187)
Q Consensus         8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~   87 (187)
                      ++.++++++ |++||+||+...  ++|.|.+| ||++++||+         +.+||+||+.||||+.+...     .+++
T Consensus         2 ~~~~ii~~~-~~vLl~~~~~~~--~~~~w~lP-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~~-----~~~~   63 (128)
T cd04684           2 GAYAVIPRD-GKLLLIQKNGGP--YEGRWDLP-GGGIEPGES---------PEEALHREVLEETGLTVEIG-----RRLG   63 (128)
T ss_pred             eeEEEEEeC-CEEEEEEccCCC--CCCeEECC-CcccCCCCC---------HHHHHHHHHHHHhCcEeecc-----eeee
Confidence            567777776 899999998654  78999997 799999999         89999999999999988653     3455


Q ss_pred             EEEEEccCCCC-cceeEEEEEEEEecCCcC---CCCccccceEEEecHHHHHHH
Q 029829           88 RILYKAPSDGK-WGEHELDYLLFIVRDVSV---NPNPDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        88 ~~~y~~~~~~~-~~e~e~~~vf~~~~~~~~---~~~~~Ev~~~~Wv~~~el~~~  137 (187)
                      .+.+....... ...+.++++|.+......   ..+.+|..+++|++++++.+.
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~  117 (128)
T cd04684          64 SASRYFYSPDGDYDAHHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIER  117 (128)
T ss_pred             EEEEEEECCCCCeeccEEEEEEEEEEecCccccCCCCCCceeeEEECHHHhhcc
Confidence            54433222211 112556778877653222   455678999999999999853

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=6.2e-19  Score=131.81  Aligned_cols=113  Identities=18%  Similarity=0.111  Sum_probs=83.4

Q ss_pred             eEEEEEEEeC--CCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCee
Q 029829            7 NIFSILGFVS--YSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT   84 (187)
Q Consensus         7 ~av~v~i~~~--~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~   84 (187)
                      |.|+|++++.  +|+|||+||+..   ++|.|++| |||++.||+         +.+||+||++|||||.+...     .
T Consensus         2 ~~~~v~~~~~~~~~~vLL~~r~~~---~~~~w~~P-gG~ve~~Es---------~~~aa~RE~~EE~Gl~~~~~-----~   63 (129)
T cd04664           2 RSVLVVPYRLTGEGRVLLLRRSDK---YAGFWQSV-TGGIEDGES---------PAEAARREVAEETGLDPERL-----T   63 (129)
T ss_pred             cEEEEEEEEeCCCCEEEEEEeCCC---CCCccccc-CcccCCCCC---------HHHHHHHHHHHHHCCChhhe-----E
Confidence            6899999998  899999999865   89999986 799999999         89999999999999987543     2


Q ss_pred             eeeEEE----EEccCCCCcceeEEEEEEEEecCCc-CCCCccccceEEEecHHHHHHHHHh
Q 029829           85 PLGRIL----YKAPSDGKWGEHELDYLLFIVRDVS-VNPNPDEVAEYKYVNREQLKELLRK  140 (187)
Q Consensus        85 ~~~~~~----y~~~~~~~~~e~e~~~vf~~~~~~~-~~~~~~Ev~~~~Wv~~~el~~~l~~  140 (187)
                      .++...    |.... .+  .+...++|++..... ....++|+.++.|++++++.+++..
T Consensus        64 ~~~~~~~~~~~~~~~-~~--~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~  121 (129)
T cd04664          64 LLDRGASIAFVEFTD-NG--RVWTEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAALLLW  121 (129)
T ss_pred             EEeecccccccccCC-Cc--eEEEEeEEEEEcCCCCcccCCccccccEecCHHHHHHHHcC
Confidence            233221    11111 11  234557777765322 2345579999999999999987553

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.80  E-value=1.6e-18  Score=132.48  Aligned_cols=115  Identities=18%  Similarity=0.156  Sum_probs=86.0

Q ss_pred             ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829            6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      -++|+++|++.+|++||+||...  ..+|.|++| ||++++||+         +.+||+||++||||+++...     .+
T Consensus        13 ~~av~~vv~~~~~~vLL~~r~~~--~~~~~w~lP-gG~ve~gEt---------~~~aa~REl~EEtGl~~~~~-----~~   75 (142)
T cd04700          13 ARAAGAVILNERNDVLLVQEKGG--PKKGLWHIP-SGAVEDGEF---------PQDAAVREACEETGLRVRPV-----KF   75 (142)
T ss_pred             eeeEEEEEEeCCCcEEEEEEcCC--CCCCeEECC-ceecCCCCC---------HHHHHHHHHHHhhCceeecc-----EE
Confidence            46899999998899999887543  358999998 699999999         89999999999999998653     34


Q ss_pred             eeEEEEEccCCCCcceeEEEEEEEEecC-CcCC-CCccccceEEEecHHHHHHHHHhc
Q 029829           86 LGRILYKAPSDGKWGEHELDYLLFIVRD-VSVN-PNPDEVAEYKYVNREQLKELLRKA  141 (187)
Q Consensus        86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~~-~~~~-~~~~Ev~~~~Wv~~~el~~~l~~~  141 (187)
                      ++.+.+..+.  +.  ....++|.+... .... ...+|+.+++|++++++.+++..+
T Consensus        76 ~~~~~~~~~~--~~--~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g  129 (142)
T cd04700          76 LGTYLGRFDD--GV--LVLRHVWLAEPEGQTLAPKFTDEIAEASFFSREDVAQLYAQG  129 (142)
T ss_pred             EEEEEEEcCC--Cc--EEEEEEEEEEecCCccccCCCCCEEEEEEECHHHhhhccccc
Confidence            6554433321  21  234567777642 2211 224799999999999999998875

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.79  E-value=1.8e-18  Score=130.24  Aligned_cols=123  Identities=15%  Similarity=0.064  Sum_probs=89.1

Q ss_pred             eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829            7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL   86 (187)
Q Consensus         7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~   86 (187)
                      ++..+++.++ |++||++|+...  ++|.|.+| ||++++||+         +.+||+||+.||||+.+...     ..+
T Consensus         2 ~~~~~~i~~~-~~vLL~~r~~~~--~~~~w~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~~-----~~~   63 (137)
T cd03427           2 LTTLCFIKDP-DKVLLLNRKKGP--GWGGWNGP-GGKVEPGET---------PEECAIRELKEETGLTIDNL-----KLV   63 (137)
T ss_pred             eEEEEEEEEC-CEEEEEEecCCC--CCCeEeCC-ceeCCCCCC---------HHHHHHHHHHHhhCeEeecc-----eEE
Confidence            4556666665 899999998764  78999987 799999998         89999999999999988754     346


Q ss_pred             eEEEEEccCCCCcceeEEEEEEEEecC-CcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 029829           87 GRILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL  162 (187)
Q Consensus        87 ~~~~y~~~~~~~~~e~e~~~vf~~~~~-~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l  162 (187)
                      +.+.+..+..   ..+...++|.+... ..+. +.+|..+++|++++++.+.           .+.|..+.+++.|+
T Consensus        64 ~~~~~~~~~~---~~~~~~~~f~~~~~~~~~~-~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~~~  125 (137)
T cd03427          64 GIIKFPFPGE---EERYGVFVFLATEFEGEPL-KESEEGILDWFDIDDLPLL-----------PMWPGDREWLPLML  125 (137)
T ss_pred             EEEEEEcCCC---CcEEEEEEEEECCcccccC-CCCccccceEEcHhhcccc-----------cCCCCcHHHHHHHh
Confidence            6665554321   22456677777643 2233 3456688999999998754           34556667777664

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=2.2e-18  Score=127.07  Aligned_cols=113  Identities=18%  Similarity=0.178  Sum_probs=81.1

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829            8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG   87 (187)
Q Consensus         8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~   87 (187)
                      +|+++|++ +|+|||+||+..+ .++|.|++| ||++++||+         +.+||+||+.||||+.+...   .+.+++
T Consensus         2 ~v~~vi~~-~~~vLL~~r~~~~-~~~~~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~v~~~---~~~~~~   66 (120)
T cd04683           2 AVYVLLRR-DDEVLLQRRANTG-YMDGQWALP-AGHLEKGED---------AVTAAVREAREEIGVTLDPE---DLRLAH   66 (120)
T ss_pred             cEEEEEEE-CCEEEEEEccCCC-CCCCeEeCC-ccccCCCCC---------HHHHHHHHHHHHHCCccChh---heEEEE
Confidence            57777777 4899999998654 358999998 799999999         89999999999999987632   234565


Q ss_pred             EEEEEccCCCCcceeEEEEEEEEec-CCcC-CCCccccceEEEecHHHHHHHHH
Q 029829           88 RILYKAPSDGKWGEHELDYLLFIVR-DVSV-NPNPDEVAEYKYVNREQLKELLR  139 (187)
Q Consensus        88 ~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~-~~~~~Ev~~~~Wv~~~el~~~l~  139 (187)
                      .+.+...  .  ..+.+.++|.+.. ...+ ..+++|+.+++|++++++...+.
T Consensus        67 ~~~~~~~--~--~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~  116 (120)
T cd04683          67 TMHRRTE--D--IESRIGLFFTVRRWSGEPRNCEPDKCAELRWFPLDALPDDTV  116 (120)
T ss_pred             EEEecCC--C--CceEEEEEEEEEeecCccccCCCCcEeeEEEEchHHCcchhc
Confidence            5433321  1  1134445555543 2323 34567999999999999987654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=2.1e-18  Score=128.77  Aligned_cols=119  Identities=18%  Similarity=0.219  Sum_probs=86.2

Q ss_pred             ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829            6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      +.+|+++|+|.+|+|||+||+..  .++|.|.+| |||+++||+         +.+||+||++||||+++...     ..
T Consensus         2 ~~~v~~ii~~~~~~iLl~~r~~~--~~~~~w~~P-GG~ve~gEt---------~~~Aa~REl~EE~Gl~~~~~-----~~   64 (129)
T cd04678           2 RVGVGVFVLNPKGKVLLGKRKGS--HGAGTWALP-GGHLEFGES---------FEECAAREVLEETGLHIENV-----QF   64 (129)
T ss_pred             ceEEEEEEECCCCeEEEEeccCC--CCCCeEECC-cccccCCCC---------HHHHHHHHHHHHhCCcccce-----EE
Confidence            46899999999999999999864  478999997 799999999         89999999999999988643     34


Q ss_pred             eeEEEEEccCCCCcceeEEEEEEEEecC-CcCC---CCccccceEEEecHHHHHHHHHhccCCCCCcccChh
Q 029829           86 LGRILYKAPSDGKWGEHELDYLLFIVRD-VSVN---PNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPW  153 (187)
Q Consensus        86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~~-~~~~---~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~  153 (187)
                      ++.+...... .  ..+.+..+|.+... ....   .+.+|+.+++|++++++.++         +..|+|.
T Consensus        65 ~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~---------~~~~~~~  124 (129)
T cd04678          65 LTVTNDVFEE-E--GKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV---------DPLFLPL  124 (129)
T ss_pred             EEEEeEEeCC-C--CcEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc---------chhhHHH
Confidence            4443222211 1  11334455555542 2222   25678999999999999975         2467773

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.79  E-value=5.9e-18  Score=129.87  Aligned_cols=115  Identities=20%  Similarity=0.260  Sum_probs=80.9

Q ss_pred             CceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCee
Q 029829            5 VPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT   84 (187)
Q Consensus         5 ~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~   84 (187)
                      +|.+|+++++|.+|++||+||+..+    |.|++| ||++++||+         +.+||.||+.||||+.+....     
T Consensus         2 ~~~~v~~ii~~~~~~vLL~~r~~~~----~~W~~P-gG~~e~gE~---------~~~aA~REv~EEtGl~~~~~~-----   62 (147)
T cd03671           2 YRPNVGVVLFNEDGKVFVGRRIDTP----GAWQFP-QGGIDEGED---------PEQAALRELEEETGLDPDSVE-----   62 (147)
T ss_pred             CCceEEEEEEeCCCEEEEEEEcCCC----CCEECC-cCCCCCCcC---------HHHHHHHHHHHHHCCCcCceE-----
Confidence            5679999999999999999998654    899997 688999999         899999999999999986532     


Q ss_pred             eeeE----EEEEccCC---CCc---ceeEEEEEEEEec---CCcCCCC---ccccceEEEecHHHHHHHH
Q 029829           85 PLGR----ILYKAPSD---GKW---GEHELDYLLFIVR---DVSVNPN---PDEVAEYKYVNREQLKELL  138 (187)
Q Consensus        85 ~~~~----~~y~~~~~---~~~---~e~e~~~vf~~~~---~~~~~~~---~~Ev~~~~Wv~~~el~~~l  138 (187)
                      .++.    +.|..+..   ..+   ......++|++..   ...+.++   ++|+.+++|++++++.+++
T Consensus        63 ~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~  132 (147)
T cd03671          63 IIAEIPDWLRYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLI  132 (147)
T ss_pred             EEEEcCCeeEeeChhhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhc
Confidence            2332    33443321   000   0122334444432   1233333   5799999999999999763

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=3.5e-18  Score=125.72  Aligned_cols=111  Identities=17%  Similarity=0.112  Sum_probs=81.6

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829            8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG   87 (187)
Q Consensus         8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~   87 (187)
                      +|+++|+++ |++||+||+..  .++|.|.+| |||+++||+         +.+||+||++||||+.+...     .+++
T Consensus         2 ~v~~ii~~~-~~vLl~~r~~~--~~~~~w~~P-gG~ie~gE~---------~~~aa~RE~~EEtGl~~~~~-----~~~~   63 (122)
T cd04673           2 AVGAVVFRG-GRVLLVRRANP--PDAGLWSFP-GGKVELGET---------LEQAALRELLEETGLEAEVG-----RLLT   63 (122)
T ss_pred             cEEEEEEEC-CEEEEEEEcCC--CCCCeEECC-CcccCCCCC---------HHHHHHHHHHHhhCcEeeec-----eeEE
Confidence            567777875 89999998753  478999987 799999999         89999999999999998643     3455


Q ss_pred             EEEEEccCCC-CcceeEEEEEEEEecC-CcCCCCccccceEEEecHHHHHHH
Q 029829           88 RILYKAPSDG-KWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        88 ~~~y~~~~~~-~~~e~e~~~vf~~~~~-~~~~~~~~Ev~~~~Wv~~~el~~~  137 (187)
                      .+.+..+..+ ....+.++++|.+... ..+ .+.+|+.+++|++++++.++
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~E~~~~~w~~~~el~~~  114 (122)
T cd04673          64 VVDVIERDAAGRVEFHYVLIDFLCRYLGGEP-VAGDDALDARWVPLDELAAL  114 (122)
T ss_pred             EEEEeeccCCCccceEEEEEEEEEEeCCCcc-cCCcccceeEEECHHHHhhC
Confidence            5554443221 1222446666776653 333 44589999999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=2.5e-18  Score=126.28  Aligned_cols=105  Identities=19%  Similarity=0.109  Sum_probs=79.8

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc-CCCCCCeeee
Q 029829            8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE-DVPVDEFTPL   86 (187)
Q Consensus         8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~-~~~~~~l~~~   86 (187)
                      +|+++++|.+|++||+||+..     +.|.+| ||++++||+         +.+||+||++||||+.+. ..     ..+
T Consensus         2 ~~~~~i~~~~~~vLL~~r~~~-----~~w~~P-gG~ve~gEt---------~~~aa~REl~EEtG~~~~~~~-----~~~   61 (120)
T cd04680           2 GARAVVTDADGRVLLVRHTYG-----PGWYLP-GGGLERGET---------FAEAARRELLEELGIRLAVVA-----ELL   61 (120)
T ss_pred             ceEEEEECCCCeEEEEEECCC-----CcEeCC-CCcCCCCCC---------HHHHHHHHHHHHHCCcccccc-----ceE
Confidence            688999999999999998643     389987 799999999         899999999999999987 43     345


Q ss_pred             eEEEEEccCCCCcceeEEEEEEEEecC-CcCCCCccccceEEEecHHHHHHH
Q 029829           87 GRILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        87 ~~~~y~~~~~~~~~e~e~~~vf~~~~~-~~~~~~~~Ev~~~~Wv~~~el~~~  137 (187)
                      +.+.+....     .+...++|.+... .....+.+|+.+++|++++++.++
T Consensus        62 ~~~~~~~~~-----~~~~~~~f~~~~~~~~~~~~~~E~~~~~w~~~~~l~~~  108 (120)
T cd04680          62 GVYYHSASG-----SWDHVIVFRARADTQPVIRPSHEISEARFFPPDALPEP  108 (120)
T ss_pred             EEEecCCCC-----CceEEEEEEecccCCCccCCcccEEEEEEECHHHCccc
Confidence            554443221     1335577777653 232556689999999999999753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=3.4e-18  Score=126.45  Aligned_cols=110  Identities=20%  Similarity=0.147  Sum_probs=78.7

Q ss_pred             ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829            6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      |.++++++ ++ |+|||+||+..+..+||+|++| ||++++||+         +.+||+||+.||||+++...     .+
T Consensus         1 ~~v~~vi~-~~-~~vLL~rR~~~~~~~~g~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~~-----~~   63 (117)
T cd04691           1 HGVVGVLF-SD-DKVLLERRSLTKNADPGKLNIP-GGHIEAGES---------QEEALLREVQEELGVDPLSY-----TY   63 (117)
T ss_pred             CeEEEEEE-EC-CEEEEEEeCCCCCCCCCeEECc-ceeecCCCC---------HHHHHHHHHHHHHCCCcccc-----eE
Confidence            34444544 43 8999999987766799999997 799999999         89999999999999986432     34


Q ss_pred             eeEEEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHHHHh
Q 029829           86 LGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRK  140 (187)
Q Consensus        86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~l~~  140 (187)
                      ++.+.+  +.  .  .....++|.+.. +..+  +.+|+.+++|++++++......
T Consensus        64 l~~~~~--~~--~--~~~~~~~~~~~~~~~~~--~~~E~~~~~W~~~~~l~~~~~~  111 (117)
T cd04691          64 LCSLYH--PT--S--ELQLLHYYVVTFWQGEI--PAQEAAEVHWMTANDIVLASEA  111 (117)
T ss_pred             EEEEec--cC--C--CeEEEEEEEEEEecCCC--CcccccccEEcCHHHcchhhhh
Confidence            544322  11  1  123455566553 3332  3479999999999999876554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.77  E-value=3.8e-18  Score=128.70  Aligned_cols=105  Identities=15%  Similarity=0.198  Sum_probs=80.6

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829            8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG   87 (187)
Q Consensus         8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~   87 (187)
                      +|.+++++.++++||+||+..   .+|.|++| ||++++||+         +.+||.||++|||||.+..+     .+++
T Consensus         2 ~v~i~l~~~~~~vLL~~r~~~---~~~~w~lP-gG~ie~gEt---------~~~aA~REl~EEtGl~~~~~-----~~l~   63 (131)
T cd03429           2 AVIVLVIDGGDRILLARQPRF---PPGMYSLL-AGFVEPGES---------LEEAVRREVKEEVGIRVKNI-----RYVG   63 (131)
T ss_pred             eEEEEEEeCCCEEEEEEecCC---CCCcCcCC-cccccCCCC---------HHHHHhhhhhhccCceeeee-----EEEe
Confidence            678888888899999998642   27999987 799999999         89999999999999998643     3454


Q ss_pred             EEEEEccCCCCcceeEEEEEEEEecC-CcCCCCccccceEEEecHHHHHHH
Q 029829           88 RILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        88 ~~~y~~~~~~~~~e~e~~~vf~~~~~-~~~~~~~~Ev~~~~Wv~~~el~~~  137 (187)
                      .+.|..+       +.++++|.+... ..+.++++|+.+++|++++++.++
T Consensus        64 ~~~~~~~-------~~~~~~f~~~~~~~~~~~~~~E~~~~~w~~~~el~~~  107 (131)
T cd03429          64 SQPWPFP-------SSLMLGFTAEADSGEIVVDDDELEDARWFSRDEVRAA  107 (131)
T ss_pred             ecCCCCC-------ceEEEEEEEEEcCCcccCCchhhhccEeecHHHHhhc
Confidence            4322211       234556666543 455667789999999999999997

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.77  E-value=2e-17  Score=124.25  Aligned_cols=125  Identities=18%  Similarity=0.164  Sum_probs=87.6

Q ss_pred             EEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeE
Q 029829            9 FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGR   88 (187)
Q Consensus         9 v~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~   88 (187)
                      |++++. .+|++||.||...   .++.|.+| ||++++||+         +.+||.||++||||+.+...     .+++.
T Consensus         3 v~~ii~-~~~~vLlv~r~~~---~~~~w~~P-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~-----~~~~~   63 (134)
T cd03675           3 VAAVVE-RDGRFLLVEEETD---GGLVFNQP-AGHLEPGES---------LIEAAVRETLEETGWHVEPT-----ALLGI   63 (134)
T ss_pred             EEEEEE-ECCEEEEEEEccC---CCceEECC-CccCCCCCC---------HHHHHHHHHHHHHCcccccc-----eEEEE
Confidence            444544 4689999998654   46899997 799999999         89999999999999998643     23454


Q ss_pred             EEEEccCCCCcceeEEEEEEEEecCC-cC-CCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q 029829           89 ILYKAPSDGKWGEHELDYLLFIVRDV-SV-NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF  163 (187)
Q Consensus        89 ~~y~~~~~~~~~e~e~~~vf~~~~~~-~~-~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l~  163 (187)
                      +.|..+.. ..  ....++|.+.... .. ....+|+.++.|++++++.++...        ..+|..+.++..||.
T Consensus        64 ~~~~~~~~-~~--~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~--------~~~~~~~~~i~~~l~  129 (134)
T cd03675          64 YQWTAPDS-DT--TYLRFAFAAELLEHLPDQPLDSGIVRAHWLTLEEILALAAR--------LRSPLVLRCIEDYLA  129 (134)
T ss_pred             EEeecCCC-Ce--eEEEEEEEEEECCCCCCCCCCCCceeeEEEeHHHHHhhhhh--------hcCchHHHHHHHHHh
Confidence            44443321 11  2233556555432 12 234468999999999999988652        467888888888863

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=4.1e-18  Score=127.27  Aligned_cols=114  Identities=24%  Similarity=0.303  Sum_probs=80.9

Q ss_pred             CCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCe
Q 029829            4 CVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF   83 (187)
Q Consensus         4 ~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l   83 (187)
                      +.+.++++++++.++++||++|+..     |.|++| ||++++||+         +.+||+||++||||+.+....    
T Consensus         5 ~~~~~~~~~v~~~~~~vLL~~r~~~-----~~w~~P-gG~v~~gEt---------~~~aa~REl~EE~Gi~~~~~~----   65 (132)
T cd04677           5 LILVGAGVILLNEQGEVLLQKRSDT-----GDWGLP-GGAMELGES---------LEETARRELKEETGLEVEELE----   65 (132)
T ss_pred             ccccceEEEEEeCCCCEEEEEecCC-----CcEECC-eeecCCCCC---------HHHHHHHHHHHHhCCeeeeeE----
Confidence            3566888999999899999999743     789987 699999999         899999999999999887543    


Q ss_pred             eeeeEE----EEEccCCCCcceeEEEEEEEEe-c-CCcCCCCccccceEEEecHHHHHHHHH
Q 029829           84 TPLGRI----LYKAPSDGKWGEHELDYLLFIV-R-DVSVNPNPDEVAEYKYVNREQLKELLR  139 (187)
Q Consensus        84 ~~~~~~----~y~~~~~~~~~e~e~~~vf~~~-~-~~~~~~~~~Ev~~~~Wv~~~el~~~l~  139 (187)
                       .++.+    .|..+. ++.. +..+.+|++. . +..+..+.+|+.+++|++++++.+++.
T Consensus        66 -~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~  124 (132)
T cd04677          66 -LLGVYSGKEFYVKPN-GDDE-QYIVTLYYVTKVFGGKLVPDGDETLELKFFSLDELPELIN  124 (132)
T ss_pred             -EEEEecCCceeecCC-CCcE-EEEEEEEEEEeccCCcccCCCCceeeEEEEChhHCccchh
Confidence             23322    122211 1211 3344334333 2 333456678999999999999987654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=1.2e-17  Score=123.76  Aligned_cols=114  Identities=18%  Similarity=0.114  Sum_probs=80.3

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829            8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG   87 (187)
Q Consensus         8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~   87 (187)
                      ++.++|++.+|++||+||+..+..++|+|++| ||++++||+         +.+||+||+.||||+++.....     ++
T Consensus         3 ~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~P-gG~ve~gEs---------~~~aa~RE~~EE~Gl~~~~~~~-----~~   67 (129)
T cd04699           3 AVAALIVKDVGRILILKRSKDERTAPGKWELP-GGKVEEGET---------FEEALKREVYEETGLTVTPFLR-----YP   67 (129)
T ss_pred             eEEEEEECCCCcEEEEEecCCCCCCCCcCcCC-ccCccCCCC---------HHHHHHHHHHHhhCcEEEeeee-----ee
Confidence            57778888779999999987766689999997 799999999         7999999999999998865321     22


Q ss_pred             EEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHH
Q 029829           88 RILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLR  139 (187)
Q Consensus        88 ~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~  139 (187)
                      ...+....  . ..+...++|.+........+++|+.+++|++++++..+..
T Consensus        68 ~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~  116 (129)
T cd04699          68 STVTHEDS--G-VYNVIYLVFVCEALSGAVKLSDEHEEYAWVTLEELAILKA  116 (129)
T ss_pred             EEEEEcCC--C-EEEEEEEEEEeeecCCcccCChhheEEEEecHHHhhhhhc
Confidence            22222111  1 1123334555433222333457899999999999965544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.76  E-value=2.6e-17  Score=127.94  Aligned_cols=115  Identities=18%  Similarity=0.206  Sum_probs=81.7

Q ss_pred             CCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCe
Q 029829            4 CVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF   83 (187)
Q Consensus         4 ~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l   83 (187)
                      -+|.+|+++++|.+|+|||+||+.    .||.|++| ||++++||+         +.+||.||+.||||+.+..+     
T Consensus         6 ~~~~~v~~~i~~~~g~vLL~~r~~----~~~~w~~P-~G~~~~gE~---------~~~aa~REl~EEtG~~~~~~-----   66 (156)
T PRK00714          6 GYRPNVGIILLNRQGQVFWGRRIG----QGHSWQFP-QGGIDPGET---------PEQAMYRELYEEVGLRPEDV-----   66 (156)
T ss_pred             CCCCeEEEEEEecCCEEEEEEEcC----CCCeEECC-cccCCCCcC---------HHHHHHHHHHHHhCCCccce-----
Confidence            367899999999999999999974    26899998 699999999         89999999999999987643     


Q ss_pred             eeeeE----EEEEccC------CCCcceeEEEEEEEEec---CCcCCC---CccccceEEEecHHHHHHHH
Q 029829           84 TPLGR----ILYKAPS------DGKWGEHELDYLLFIVR---DVSVNP---NPDEVAEYKYVNREQLKELL  138 (187)
Q Consensus        84 ~~~~~----~~y~~~~------~~~~~e~e~~~vf~~~~---~~~~~~---~~~Ev~~~~Wv~~~el~~~l  138 (187)
                      ..++.    +.|..+.      ..... ....++|++..   ...+.+   +.+|+.+++|++++++.+++
T Consensus        67 ~~~~~~~~~~~y~~~~~~~~~~~~~~~-~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~  136 (156)
T PRK00714         67 EILAETRDWLRYDLPKRLVRRSKGVYR-GQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQV  136 (156)
T ss_pred             EEEEEcCCeEEecCcHHHhhccCCccc-CcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhc
Confidence            22333    2343321      11111 12334555543   223333   33699999999999999764

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=3.8e-17  Score=121.77  Aligned_cols=110  Identities=20%  Similarity=0.197  Sum_probs=75.9

Q ss_pred             ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829            6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      +.+|+++|+|.+|+|||.||...   ++|.|.+| ||++++||+         +.+||+||+.||||+.+....     .
T Consensus         2 ~~~~~~~v~~~~~~vLl~~r~~~---~~~~w~~P-GG~ve~gEt---------~~~aa~RE~~EE~Gl~~~~~~-----~   63 (127)
T cd04670           2 TVGVGGLVLNEKNEVLVVQERNK---TPNGWKLP-GGLVDPGED---------IFDGAVREVLEETGIDTEFVS-----V   63 (127)
T ss_pred             eeEEEEEEEcCCCeEEEEEccCC---CCCcEECC-CccCCCCCC---------HHHHHHHHHHHHHCCCcceeE-----E
Confidence            35788899998899999887543   78999997 799999999         899999999999999886432     2


Q ss_pred             eeEEEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHH
Q 029829           86 LGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKE  136 (187)
Q Consensus        86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~  136 (187)
                      ++. .+..+.  ......+.+++.+.. +..+.++++|+.+++|++++++.+
T Consensus        64 ~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~  112 (127)
T cd04670          64 VGF-RHAHPG--AFGKSDLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYIS  112 (127)
T ss_pred             EEE-EecCCC--CcCceeEEEEEEEccCcCcCCCChhhhheeEEEcHHHHhc
Confidence            322 122211  111111212222221 233456678999999999999964

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=2e-17  Score=122.09  Aligned_cols=111  Identities=15%  Similarity=0.046  Sum_probs=77.4

Q ss_pred             eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829            7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL   86 (187)
Q Consensus         7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~   86 (187)
                      .+|++++++++|++||+||+..     |.|++| ||++++||+         +.+||.||+.||||+++....     .+
T Consensus         3 ~~v~~ii~~~~~~vLl~~r~~~-----~~w~lP-gG~v~~~E~---------~~~aa~REl~EE~Gl~~~~~~-----~~   62 (129)
T cd04676           3 PGVTAVVRDDEGRVLLIRRSDN-----GLWALP-GGAVEPGES---------PADTAVREVREETGLDVEVTG-----LV   62 (129)
T ss_pred             ceEEEEEECCCCeEEEEEecCC-----CcEECC-eeccCCCCC---------HHHHHHHHHHHHhCceeEeeE-----EE
Confidence            4788888898899999999754     899997 699999999         799999999999999876432     22


Q ss_pred             eEE---EEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHH
Q 029829           87 GRI---LYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        87 ~~~---~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~  137 (187)
                      +.+   .+.....++...+.+.++|.+.. +.....+.+|..+++|++++++.++
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~  117 (129)
T cd04676          63 GIYTGPVHVVTYPNGDVRQYLDITFRCRVVGGELRVGDDESLDVAWFDPDGLPPL  117 (129)
T ss_pred             EEeecccceeecCCCCcEEEEEEEEEEEeeCCeecCCCCceeEEEEEChhhCccc
Confidence            211   01111111111244555666543 3333345678999999999998865

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=4.5e-17  Score=121.24  Aligned_cols=110  Identities=19%  Similarity=0.223  Sum_probs=78.8

Q ss_pred             CceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCee
Q 029829            5 VPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT   84 (187)
Q Consensus         5 ~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~   84 (187)
                      .||++++++.+  ++|||+||+.     .+.|.+| ||++++||+         +.+||.||+.||||+++....     
T Consensus         1 ~~~v~~vi~~~--~~vLl~~~~~-----~~~w~lP-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~~~-----   58 (126)
T cd04688           1 KVRAAAIIIHN--GKLLVQKNPD-----ETFYRPP-GGGIEFGES---------SEEALIREFKEELGLKIEITR-----   58 (126)
T ss_pred             CeEEEEEEEEC--CEEEEEEeCC-----CCeEECC-CccccCCCC---------HHHHHHHHHHHHhCCceecce-----
Confidence            37888888865  5999999864     5789887 699999999         899999999999999886543     


Q ss_pred             eeeEEEEEccCCCCcceeEEEEEEEEecC-CcCC-------CCccccceEEEecHHHHHHH
Q 029829           85 PLGRILYKAPSDGKWGEHELDYLLFIVRD-VSVN-------PNPDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        85 ~~~~~~y~~~~~~~~~e~e~~~vf~~~~~-~~~~-------~~~~Ev~~~~Wv~~~el~~~  137 (187)
                      .++.+.+.....+.. .+.++++|.+... ....       .+.+|+.+++|++++++..+
T Consensus        59 ~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~  118 (126)
T cd04688          59 LLGVVENIFTYNGKP-GHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEI  118 (126)
T ss_pred             eeEEEEEeeccCCcc-cEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccC
Confidence            344433222222222 2556778877653 2222       24579999999999999843

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.73  E-value=5.4e-17  Score=121.02  Aligned_cols=111  Identities=19%  Similarity=0.115  Sum_probs=78.5

Q ss_pred             ceEEEEEEEeCCC---eEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCC
Q 029829            6 PNIFSILGFVSYS---VMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE   82 (187)
Q Consensus         6 h~av~v~i~~~~g---~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~   82 (187)
                      .+++++++++.++   ++||.||+.      |.|++| |||+++||+         +.+||+||+.||||+.+.....  
T Consensus         2 ~~~~g~vi~~~~~~~~~vLl~~~~~------~~w~~P-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~~~--   63 (130)
T cd03428           2 ERSAGAIIYRRLNNEIEYLLLQASY------GHWDFP-KGHVEPGED---------DLEAALRETEEETGITAEQLFI--   63 (130)
T ss_pred             ceEEEEEEEEecCCCceEEEEEccC------CcCcCC-cCCCCCCCC---------HHHHHHHHHHHHHCCChhhhhh--
Confidence            3678888887654   789998874      788887 699999999         8999999999999999876432  


Q ss_pred             eeeeeEEEEEccCCCCcceeEEEEEEEEecC--CcCCCCccccceEEEecHHHHHHHHH
Q 029829           83 FTPLGRILYKAPSDGKWGEHELDYLLFIVRD--VSVNPNPDEVAEYKYVNREQLKELLR  139 (187)
Q Consensus        83 l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~--~~~~~~~~Ev~~~~Wv~~~el~~~l~  139 (187)
                         ++.+.+...... ...+..+++|.+...  ..+.++ +|+.++.|++++++.+++.
T Consensus        64 ---~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~-~E~~~~~W~~~~e~~~~~~  117 (130)
T cd03428          64 ---VLGFKETLNYQV-RGKLKTVTYFLAELRPDVEVKLS-EEHQDYRWLPYEEALKLLT  117 (130)
T ss_pred             ---hccceeEEEccc-cCcceEEEEEEEEeCCCCccccc-cceeeEEeecHHHHHHHcC
Confidence               222222221110 111345566666543  345555 7999999999999988754

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=1.3e-16  Score=118.55  Aligned_cols=108  Identities=18%  Similarity=0.150  Sum_probs=77.9

Q ss_pred             ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829            6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      |..|+++|++ +|++||+||..     .+.|.+| ||++++||+         +.+||.||++||||+++...     .+
T Consensus         1 ~~~~~~vi~~-~~~vLlv~~~~-----~~~~~lP-GG~ve~gEt---------~~~aa~REl~EEtGl~~~~~-----~~   59 (125)
T cd04689           1 HLRARAIVRA-GNKVLLARVIG-----QPHYFLP-GGHVEPGET---------AENALRRELQEELGVAVSDG-----RF   59 (125)
T ss_pred             CeEEEEEEEe-CCEEEEEEecC-----CCCEECC-CCcCCCCCC---------HHHHHHHHHHHHhCceeecc-----EE
Confidence            5667777775 68999998853     2578887 799999999         89999999999999988743     44


Q ss_pred             eeEEEEEccCCCCcceeEEEEEEEEecCC----cCCCCccccceEEEecHHHHH
Q 029829           86 LGRILYKAPSDGKWGEHELDYLLFIVRDV----SVNPNPDEVAEYKYVNREQLK  135 (187)
Q Consensus        86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~~~----~~~~~~~Ev~~~~Wv~~~el~  135 (187)
                      ++.+.+.....+.. .+.+.++|.+....    ....+++|+.+++|++++++.
T Consensus        60 l~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~  112 (125)
T cd04689          60 LGAIENQWHEKGVR-THEINHIFAVESSWLASDGPPQADEDHLSFSWVPVSDLS  112 (125)
T ss_pred             EEEEeeeeccCCce-EEEEEEEEEEEcccccccCCccCccceEEEEEccHHHcc
Confidence            66554443332222 25666777776421    123345689999999999964

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.72  E-value=1.5e-16  Score=117.68  Aligned_cols=120  Identities=16%  Similarity=0.191  Sum_probs=82.3

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829            8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG   87 (187)
Q Consensus         8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~   87 (187)
                      .+.++|++.+|++||+||+... .++|+|++| ||++++||+         +.+||.||+.||+|+++...     ..++
T Consensus         6 ~~~~ii~~~~~~vll~rR~~~~-~~~g~w~~P-gG~~~~gE~---------~~~a~~Re~~EE~gl~~~~~-----~~~~   69 (129)
T PRK10776          6 IAVGIIRNPNNEIFITRRAADA-HMAGKWEFP-GGKIEAGET---------PEQALIRELQEEVGITVQHA-----TLFE   69 (129)
T ss_pred             EEEEEEECCCCEEEEEEecCCC-CCCCeEECC-ceecCCCCC---------HHHHHHHHHHHHHCCceecc-----eEEE
Confidence            4445566777899999998764 589999998 699999999         78999999999999987542     2355


Q ss_pred             EEEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 029829           88 RILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF  161 (187)
Q Consensus        88 ~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~  161 (187)
                      .+.+..+.  .   +...++|.+.. +..  +...|..+++|++++++...           .+.+..+.+++.+
T Consensus        70 ~~~~~~~~--~---~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~~~l~~~-----------~~p~~~~~~~~~~  126 (129)
T PRK10776         70 KLEYEFPD--R---HITLWFWLVESWEGE--PWGKEGQPGRWVSQVALNAD-----------EFPPANEPIIAKL  126 (129)
T ss_pred             EEEeeCCC--c---EEEEEEEEEEEECCc--cCCccCCccEEecHHHCccC-----------CCCcccHHHHHHH
Confidence            54444432  1   11233444432 222  23457889999999998753           3556566666544

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.72  E-value=2.9e-16  Score=117.97  Aligned_cols=121  Identities=15%  Similarity=0.056  Sum_probs=82.8

Q ss_pred             EEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeE
Q 029829            9 FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGR   88 (187)
Q Consensus         9 v~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~   88 (187)
                      +..++++.+|+|||+||+..+ .++|+|++| ||++++||+         +.+|++||+.||||+.+...     .+++.
T Consensus         6 ~~~~ii~~~~~vLL~~R~~~~-~~~g~w~~P-gG~ve~gE~---------~~~a~~RE~~EE~Gl~~~~~-----~~~~~   69 (135)
T PRK10546          6 VVAAIIERDGKILLAQRPAHS-DQAGLWEFA-GGKVEPGES---------QPQALIRELREELGIEATVG-----EYVAS   69 (135)
T ss_pred             EEEEEEecCCEEEEEEccCCC-CCCCcEECC-cccCCCCCC---------HHHHHHHHHHHHHCCccccc-----eeEEE
Confidence            333344567899999997654 589999998 799999999         78999999999999997643     23444


Q ss_pred             EEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q 029829           89 ILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF  163 (187)
Q Consensus        89 ~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l~  163 (187)
                      +.+..+.  .   +...++|.+.. .+.+  ...|..+++|++++++..+           .+.|..+.+++.|+.
T Consensus        70 ~~~~~~~--~---~~~~~~~~~~~~~~~~--~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~~~~  127 (135)
T PRK10546         70 HQREVSG--R---RIHLHAWHVPDFHGEL--QAHEHQALVWCTPEEALRY-----------PLAPADIPLLEAFMA  127 (135)
T ss_pred             EEEecCC--c---EEEEEEEEEEEecCcc--cccccceeEEcCHHHcccC-----------CCCcCcHHHHHHHHH
Confidence            4443321  1   11234444433 2222  2357789999999999864           466767777777743

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=1e-16  Score=119.90  Aligned_cols=104  Identities=13%  Similarity=0.105  Sum_probs=76.9

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829            8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG   87 (187)
Q Consensus         8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~   87 (187)
                      +|++++++.+|+|||+||...  .++|.|.+| ||+++.||+         +.+||+||++||||+++....     .++
T Consensus         2 ~~~~vv~~~~~~vLl~~r~~~--~~~~~w~lP-gG~ve~gEt---------~~~aa~REl~EEtG~~~~~~~-----~~~   64 (123)
T cd04671           2 IVAAVILNNQGEVLLIQEAKR--SCRGKWYLP-AGRMEPGET---------IEEAVKREVKEETGLDCEPTT-----LLS   64 (123)
T ss_pred             EEEEEEEcCCCEEEEEEecCC--CCCCeEECc-eeecCCCCC---------HHHHHHHHHHHHHCCeeecce-----EEE
Confidence            678889998999999998753  368999998 699999999         899999999999999987542     233


Q ss_pred             EEEEEccCCCCcceeEEEEEEEEec-CCcCC---CCccccceEEEecHHHHHH
Q 029829           88 RILYKAPSDGKWGEHELDYLLFIVR-DVSVN---PNPDEVAEYKYVNREQLKE  136 (187)
Q Consensus        88 ~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~---~~~~Ev~~~~Wv~~~el~~  136 (187)
                      .  +...     . +.+.++|.+.. ++.+.   .+.+|+.+++|++++++..
T Consensus        65 ~--~~~~-----~-~~~~~~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el~~  109 (123)
T cd04671          65 V--EEQG-----G-SWFRFVFTGNITGGDLKTEKEADSESLQARWYSNKDLPL  109 (123)
T ss_pred             E--EccC-----C-eEEEEEEEEEEeCCeEccCCCCCcceEEEEEECHHHCCC
Confidence            2  1111     1 34556676654 22222   2346888999999999943

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=1.6e-16  Score=116.60  Aligned_cols=108  Identities=17%  Similarity=0.103  Sum_probs=78.8

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829            8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG   87 (187)
Q Consensus         8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~   87 (187)
                      .+++++++.+|++||.||+.     .|.|.+| ||++++||+         +.+||+||++||||+.+...   .+..++
T Consensus         2 ~~~~~v~~~~~~vLl~~r~~-----~~~w~~P-gG~ve~~Es---------~~~aa~REl~EEtGl~~~~~---~~~~~~   63 (118)
T cd04690           2 IAAALILVRDGRVLLVRKRG-----TDVFYLP-GGKIEAGET---------PLQALIRELSEELGLDLDPD---SLEYLG   63 (118)
T ss_pred             eEEEEEEecCCeEEEEEECC-----CCcEECC-CCccCCCCC---------HHHHHHHHHHHHHCCccChh---heEEEE
Confidence            46777888889999988763     3678887 699999999         89999999999999988641   245566


Q ss_pred             EEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHH
Q 029829           88 RILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKE  136 (187)
Q Consensus        88 ~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~  136 (187)
                      .+.+.......  .+...++|.+.....+. ..+|+.+++|++++++..
T Consensus        64 ~~~~~~~~~~~--~~~~~~~f~~~~~~~~~-~~~e~~~~~W~~~~e~~~  109 (118)
T cd04690          64 TFRAPAANEPG--VDVRATVYVAELTGEPV-PAAEIEEIRWVDYDDPAD  109 (118)
T ss_pred             EEecccccCCC--cEEEEEEEEEcccCCcC-CCchhhccEEecHHHccc
Confidence            65443222111  24566777776544433 347999999999999853

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PLN02325 nudix hydrolase

Probab=99.71  E-value=1.4e-16  Score=122.26  Aligned_cols=113  Identities=16%  Similarity=0.151  Sum_probs=77.7

Q ss_pred             ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829            6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      +.++.+++++. |+|||+||+...  .-|.|.+| ||+++.||+         +.+||+||++||||+++...     ..
T Consensus         9 ~~~v~~vi~~~-~~vLL~rr~~~~--~~g~W~lP-GG~ve~gEs---------~~~aa~REv~EEtGl~v~~~-----~~   70 (144)
T PLN02325          9 RVAVVVFLLKG-NSVLLGRRRSSI--GDSTFALP-GGHLEFGES---------FEECAAREVKEETGLEIEKI-----EL   70 (144)
T ss_pred             eEEEEEEEEcC-CEEEEEEecCCC--CCCeEECC-ceeCCCCCC---------HHHHHHHHHHHHHCCCCcce-----EE
Confidence            45677777774 799999998642  34889997 799999999         89999999999999998754     33


Q ss_pred             eeEEEEEccCCCCcceeEEEEEEEEec-CC---cCCCCccccceEEEecHHHHHHH
Q 029829           86 LGRILYKAPSDGKWGEHELDYLLFIVR-DV---SVNPNPDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~---~~~~~~~Ev~~~~Wv~~~el~~~  137 (187)
                      ++.+.+....... ..+.+.++|.+.. +.   ....+++|+.+++|++++++...
T Consensus        71 l~~~~~~~~~~~~-~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~  125 (144)
T PLN02325         71 LTVTNNVFLEEPK-PSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEP  125 (144)
T ss_pred             EEEecceeecCCC-CcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChh
Confidence            5443322211111 1244555555543 22   12345567899999999999864

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=3.9e-16  Score=117.35  Aligned_cols=104  Identities=20%  Similarity=0.166  Sum_probs=71.9

Q ss_pred             eCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeEEEEEcc
Q 029829           15 VSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP   94 (187)
Q Consensus        15 ~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~~~y~~~   94 (187)
                      +.++++||.||+..   ++|.|.+| ||++++||+         +.+||+||++|||||++..+..  ...+.. .|..+
T Consensus        11 ~~~~~vLl~~r~~~---~~g~w~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~~~~--~~~~~~-~~~~~   74 (131)
T cd04695          11 DKETKVLLLKRVKT---LGGFWCHV-AGGVEAGET---------AWQAALRELKEETGISLPELYN--ADYLEQ-FYEAN   74 (131)
T ss_pred             CCCCEEEEEEecCC---CCCcEECC-cccccCCCC---------HHHHHHHHHHHHhCCCcccccc--ccceee-EeecC
Confidence            45679999999854   78999986 899999999         8999999999999998865321  111211 23321


Q ss_pred             CCCCcceeEEEEEEEEec-CC-cCCCCccccceEEEecHHHHHHHHH
Q 029829           95 SDGKWGEHELDYLLFIVR-DV-SVNPNPDEVAEYKYVNREQLKELLR  139 (187)
Q Consensus        95 ~~~~~~e~e~~~vf~~~~-~~-~~~~~~~Ev~~~~Wv~~~el~~~l~  139 (187)
                        ...  ....++|++.. .. .+.++ +|+.+++|++++++.+++.
T Consensus        75 --~~~--~~~~~~f~~~~~~~~~~~~~-~E~~~~~W~~~~e~~~~~~  116 (131)
T cd04695          75 --DNR--ILMAPVFVGFVPPHQEVVLN-HEHTEYRWCSFAEALELAP  116 (131)
T ss_pred             --Cce--EEEEEEEEEEecCCCccccC-chhcccEecCHHHHHHhcC
Confidence              111  23344555543 22 23343 7999999999999998754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=2.6e-16  Score=119.43  Aligned_cols=114  Identities=15%  Similarity=0.134  Sum_probs=78.4

Q ss_pred             eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829            7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL   86 (187)
Q Consensus         7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~   86 (187)
                      |+|+++++|.+|+|||+||...+..+++.|.+| ||+++.||+         +.+||.||+.||||+.+..+.    ..+
T Consensus         1 ~~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~P-gG~ve~gE~---------~~~a~~Re~~EE~G~~~~~~~----~~~   66 (133)
T cd04685           1 RAARVVLLDPDDRVLLLRGDDPDSPGPDWWFTP-GGGVEPGES---------PEQAARRELREETGITVADLG----PPV   66 (133)
T ss_pred             CeEEEEEEcCCCeEEEEEEeCCCCCCCCEEECC-cCCCCCCCC---------HHHHHHHHHHHHHCCcccccc----ceE
Confidence            689999999999999999876544578899986 689999999         899999999999999983321    123


Q ss_pred             eEEE--EEccCCCCcceeEEEEEEEEecC-CcC---C---CCccccceEEEecHHHHHHH
Q 029829           87 GRIL--YKAPSDGKWGEHELDYLLFIVRD-VSV---N---PNPDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        87 ~~~~--y~~~~~~~~~e~e~~~vf~~~~~-~~~---~---~~~~Ev~~~~Wv~~~el~~~  137 (187)
                      +...  |....  ... +...++|.+... ..+   .   ...+++.+++|++++++.+.
T Consensus        67 ~~~~~~f~~~~--~~~-~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~  123 (133)
T cd04685          67 WRRDAAFTFLG--VDG-RQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT  123 (133)
T ss_pred             EEEEEEEEecC--ccc-eeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence            2222  32221  111 234455666532 111   1   11235678999999998864

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=3.6e-16  Score=116.79  Aligned_cols=111  Identities=14%  Similarity=0.082  Sum_probs=75.2

Q ss_pred             eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829            7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL   86 (187)
Q Consensus         7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~   86 (187)
                      .+++++|++ +|+|||+||...   .++.|.+| ||++++||+         +++||+||+.||||+.+...++     .
T Consensus         2 ~~a~~iv~~-~~~vLl~~r~~~---~~~~~~lP-GG~ve~gEt---------~~~aa~RE~~EEtGl~v~~~~~-----~   62 (128)
T cd04687           2 NSAKAVIIK-NDKILLIKHHDD---GGVWYILP-GGGQEPGET---------LEDAAHRECKEEIGIDVEIGPL-----L   62 (128)
T ss_pred             cEEEEEEEE-CCEEEEEEEEcC---CCCeEECC-CcccCCCCC---------HHHHHHHHHHHHHCCccccCcE-----E
Confidence            456666666 579999998643   24788887 799999999         8999999999999999875432     2


Q ss_pred             eEEEEEccC---CCCcceeEEEEEEEEecC-CcC-----CCCccccceEEEecHHHHHHH
Q 029829           87 GRILYKAPS---DGKWGEHELDYLLFIVRD-VSV-----NPNPDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        87 ~~~~y~~~~---~~~~~e~e~~~vf~~~~~-~~~-----~~~~~Ev~~~~Wv~~~el~~~  137 (187)
                      +...|....   ......+.++++|.+... ...     ..+ .|..+++|++++++.++
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~-~~~~~~~W~~~~~l~~~  121 (128)
T cd04687          63 FVREYIGHNPTSELPGHFHQVELMFECKIKSGTPAKTPSKPD-PNQIGVEWLKLKELGDI  121 (128)
T ss_pred             EEEEEeccCccccCCCceeEEEEEEEEEECCCCcccccCCCC-CCEEeeEEEcHHHhCcc
Confidence            222333211   011223567788877652 211     222 45579999999999765

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.71  E-value=3.4e-16  Score=114.45  Aligned_cols=107  Identities=20%  Similarity=0.173  Sum_probs=79.0

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829            8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG   87 (187)
Q Consensus         8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~   87 (187)
                      ++.+++++++|++||+||+..+ .++|+|++| ||+++.+|+         +.+||.||+.||+|+.+...     .+++
T Consensus         3 ~~~~~i~~~~~~~Ll~~r~~~~-~~~g~w~~p-~G~~~~~e~---------~~~~a~Re~~EE~g~~~~~~-----~~~~   66 (124)
T cd03425           3 VVAAIIIDDDGRILIAQRPAGK-HLGGLWEFP-GGKVEPGET---------PEQALVRELREELGIEVEVG-----ELLA   66 (124)
T ss_pred             EEEEEEECCCCEEEEEEeCCCC-CCCCeEeCC-CcccCCCCC---------HHHHHHHHHHHhhCcEEecc-----ceEE
Confidence            3455667777999999998766 689999997 699999998         89999999999999987643     3466


Q ss_pred             EEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHH
Q 029829           88 RILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKE  136 (187)
Q Consensus        88 ~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~  136 (187)
                      .+.+..+.     .+...++|.+..... .....|..++.|++++++.+
T Consensus        67 ~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~~el~~  109 (124)
T cd03425          67 TVEHDYPD-----KRVTLHVFLVELWSG-EPQLLEHQELRWVPPEELDD  109 (124)
T ss_pred             EEEeeCCC-----CeEEEEEEEEeeeCC-CcccccCceEEEeeHHHccc
Confidence            65555431     133456666654221 12246789999999999975

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.70  E-value=3.3e-16  Score=120.51  Aligned_cols=132  Identities=12%  Similarity=0.047  Sum_probs=84.1

Q ss_pred             EEEEEEEeCC-CeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829            8 IFSILGFVSY-SVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL   86 (187)
Q Consensus         8 av~v~i~~~~-g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~   86 (187)
                      .+++++++.+ |++||+||..     ++.|++| ||++++||+         +.+||+||+.||||+.+....     ..
T Consensus         3 ~~gaii~~~~~~~vLLvr~~~-----~~~W~lP-GG~ve~gEs---------~~~AA~REl~EETGl~v~~~~-----~~   62 (145)
T cd03672           3 VYGAIILNEDLDKVLLVKGWK-----SKSWSFP-KGKINKDED---------DHDCAIREVYEETGFDISKYI-----DK   62 (145)
T ss_pred             eeEEEEEeCCCCEEEEEEecC-----CCCEECC-CccCCCCcC---------HHHHHHHHHHHhhCccceecc-----cc
Confidence            5778888865 6999998752     3589997 799999999         899999999999999876421     11


Q ss_pred             eEEEEEccCCCCcceeEEEEEEEEec-C--CcCCC-CccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 029829           87 GRILYKAPSDGKWGEHELDYLLFIVR-D--VSVNP-NPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL  162 (187)
Q Consensus        87 ~~~~y~~~~~~~~~e~e~~~vf~~~~-~--~~~~~-~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l  162 (187)
                        ..|.....   . ...+++|++.. .  ....+ +.+|+.+++|++++++.+++....    ...++-.+ .++..|+
T Consensus        63 --~~~~~~~~---~-~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~----~~~~~~~~-~~~~~~~  131 (145)
T cd03672          63 --DDYIELII---R-GQNVKLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNKKI----PGLNSNKF-FMVIPFI  131 (145)
T ss_pred             --ceeeeccc---C-CcEEEEEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhhcc----ccccccce-EEEhHHH
Confidence              11222111   1 11233444432 2  22223 347999999999999999987631    12233222 3344566


Q ss_pred             HHHHhHhc
Q 029829          163 FKWWDHLE  170 (187)
Q Consensus       163 ~~~~~~~~  170 (187)
                      .+..+|+.
T Consensus       132 ~~~~~~~~  139 (145)
T cd03672         132 KPLKKWIN  139 (145)
T ss_pred             HHHHHHHH
Confidence            66655553

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=4.2e-16  Score=112.84  Aligned_cols=110  Identities=19%  Similarity=0.214  Sum_probs=82.7

Q ss_pred             eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829            7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL   86 (187)
Q Consensus         7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~   86 (187)
                      +++++++++.++++||+||+..   ++|+|.+| ||+++.+|+         +.+||+||+.||+|+.+...     ...
T Consensus         1 ~~~~~i~~~~~~~ill~kr~~~---~~~~~~~p-~G~~~~~e~---------~~~~a~RE~~EE~Gl~~~~~-----~~~   62 (123)
T cd02883           1 VAVGAVILDEDGRVLLVRRADS---PGGLWELP-GGGVEPGET---------LEEAAIREVREETGLDVDVL-----RLL   62 (123)
T ss_pred             CceEEEEECCCCCEEEEEEcCC---CCCeEeCC-cccccCCCC---------HHHHHHHHHHHhhCccceee-----eEE
Confidence            3678888888899999999876   78999997 699999999         89999999999999987532     234


Q ss_pred             eEEEEEccCCCCcceeEEEEEEEEecCCc-C-CCCccccceEEEecHHHHHHH
Q 029829           87 GRILYKAPSDGKWGEHELDYLLFIVRDVS-V-NPNPDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        87 ~~~~y~~~~~~~~~e~e~~~vf~~~~~~~-~-~~~~~Ev~~~~Wv~~~el~~~  137 (187)
                      +.+.|..+.   .......++|.+..... . ..+++|+.+.+|++++++.++
T Consensus        63 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~~l~~~  112 (123)
T cd02883          63 GVYEVESPD---EGEHAVVFVFLARLVGGEPTLLPPDEISEVRWVTLDELPAL  112 (123)
T ss_pred             EEEEeeccC---CCceEEEEEEEEEeCCCCcCCCCCCccceEEEEcHHHCccc
Confidence            555555432   12245667776665322 2 256689999999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=3.2e-16  Score=116.41  Aligned_cols=110  Identities=10%  Similarity=-0.012  Sum_probs=75.9

Q ss_pred             eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829            7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL   86 (187)
Q Consensus         7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~   86 (187)
                      ..|.++|+++ |++||.+|..     .|.|++| ||++++||+         +.+||+||++||||+.+...     .++
T Consensus         3 ~~v~~~i~~~-~~vLL~~~~~-----~~~w~~P-GG~ve~gEs---------~~~aa~REl~EEtG~~~~~~-----~~~   61 (123)
T cd04672           3 VDVRAAIFKD-GKILLVREKS-----DGLWSLP-GGWADVGLS---------PAENVVKEVKEETGLDVKVR-----KLA   61 (123)
T ss_pred             ceEEEEEEEC-CEEEEEEEcC-----CCcEeCC-ccccCCCCC---------HHHHHHHHHHHHhCCeeeEe-----EEE
Confidence            3577788886 8999888764     5889987 799999999         89999999999999987432     223


Q ss_pred             eEEEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHHH
Q 029829           87 GRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELL  138 (187)
Q Consensus        87 ~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~l  138 (187)
                      +.+.+..........+.+..+|.+.. +..+..+ +|+.+++|++++++.++.
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~E~~~~~W~~~~el~~l~  113 (123)
T cd04672          62 AVDDRNKHHPPPQPYQVYKLFFLCEILGGEFKPN-IETSEVGFFALDDLPPLS  113 (123)
T ss_pred             EEeccccccCCCCceEEEEEEEEEEecCCcccCC-CceeeeEEECHHHCcccc
Confidence            33211111111122244555666664 3444455 799999999999997754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=8.7e-16  Score=114.81  Aligned_cols=113  Identities=17%  Similarity=0.080  Sum_probs=77.8

Q ss_pred             EEEEEEEeCC---CeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCee
Q 029829            8 IFSILGFVSY---SVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT   84 (187)
Q Consensus         8 av~v~i~~~~---g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~   84 (187)
                      ++++++++.+   +++||.+|...     |.|.+| ||+++.||+         +.+||+||+.||||+.....    +.
T Consensus         2 ~~g~v~~~~~~~~~~vLLv~~~~~-----~~w~~P-gG~ve~~E~---------~~~aa~RE~~EEtG~~~~~~----~~   62 (122)
T cd04666           2 QAGAIPYRETGGEVEVLLVTSRRT-----GRWIVP-KGGPEKDES---------PAEAAAREAWEEAGVRGKIG----KR   62 (122)
T ss_pred             EEEEEEEEEcCCceEEEEEEecCC-----CeEECC-CCCcCCCCC---------HHHHHHHHHHHHhCCccccc----ce
Confidence            4566666643   57999887532     889887 699999999         89999999999999987543    14


Q ss_pred             eeeEEEEEccCCCCcceeEEEEEEEEecCC-cCCCCccccceEEEecHHHHHHHHHh
Q 029829           85 PLGRILYKAPSDGKWGEHELDYLLFIVRDV-SVNPNPDEVAEYKYVNREQLKELLRK  140 (187)
Q Consensus        85 ~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~-~~~~~~~Ev~~~~Wv~~~el~~~l~~  140 (187)
                      +++.+.|..+..+ ...+...++|.+.... .......|..+++|++++++.+++..
T Consensus        63 ~l~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~ea~~~~~~  118 (122)
T cd04666          63 PLGRFEYRKRSKN-RPPRCEVAVFPLEVTEELDEWPEMHQRKRKWFSPEEAALLVEE  118 (122)
T ss_pred             EEEEEEeeecCCC-CCceEEEEEEEEEEeccccCCcccCceEEEEecHHHHHHhcCC
Confidence            6777766654321 1113344555555422 22223457889999999999988764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=99.68  E-value=5.4e-16  Score=124.52  Aligned_cols=115  Identities=17%  Similarity=0.059  Sum_probs=81.4

Q ss_pred             EEEEEEEe--CCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829            8 IFSILGFV--SYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         8 av~v~i~~--~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      ++.++.+.  .++.+|++||+.....++|.|++| ||+++++|.+        +.+||+||++||||+.+..+     .+
T Consensus        32 aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~P-GG~~e~~de~--------~~~tA~REl~EEtGl~~~~~-----~~   97 (190)
T PRK10707         32 AAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFP-GGAVDPTDAS--------LIATALREAQEEVAIPPSAV-----EV   97 (190)
T ss_pred             eEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcC-CcccCCCccc--------HHHHHHHHHHHHHCCCccce-----EE
Confidence            44444442  345899999998766789999997 6999986532        79999999999999988653     56


Q ss_pred             eeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHH
Q 029829           86 LGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLR  139 (187)
Q Consensus        86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~  139 (187)
                      +|.+....... ++  ....++++...+....++++|+.++.|++++++.++..
T Consensus        98 lg~l~~~~~~~-~~--~~~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~~~  148 (190)
T PRK10707         98 IGVLPPVDSST-GY--QVTPVVGIIPPDLPYRANEDEVAAVFEMPLAEALHLGR  148 (190)
T ss_pred             EEEeeeeeccC-Cc--EEEEEEEEECCCCCCCCChhhhheEEEEeHHHHhCccc
Confidence            77764332221 21  22334444433445667889999999999999988753

>PLN02709 nudix hydrolase

Probab=99.68  E-value=4.8e-16  Score=127.12  Aligned_cols=118  Identities=15%  Similarity=0.035  Sum_probs=85.0

Q ss_pred             CCCceEEEEEEEeC------CCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 029829            3 KCVPNIFSILGFVS------YSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE   76 (187)
Q Consensus         3 g~~h~av~v~i~~~------~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~   76 (187)
                      +..+.||.+.++..      +..|||.+|+.....+||.|++| ||+++++|.+        +.+||+||+.||+||+..
T Consensus        30 ~~r~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafP-GG~~e~~D~~--------~~~tAlRE~~EEiGl~~~  100 (222)
T PLN02709         30 PAKSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALP-GGKRDEEDKD--------DIATALREAREEIGLDPS  100 (222)
T ss_pred             CCCccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCC-CcccCCCCCC--------HHHHHHHHHHHHHCCCch
Confidence            34567888888763      22799999998777899999998 7999998753        789999999999999887


Q ss_pred             CCCCCCeeeeeEEEEEccCCCCcceeEEEEEEEEec--CCcCCCCccccceEEEecHHHHHHH
Q 029829           77 DVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        77 ~~~~~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~--~~~~~~~~~Ev~~~~Wv~~~el~~~  137 (187)
                      .+.     .+|......... ++  ....+|..+..  ...+.+|++||+++.|++++.+.+.
T Consensus       101 ~v~-----vlg~L~~~~t~s-g~--~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~~  155 (222)
T PLN02709        101 LVT-----IISVLEPFVNKK-GM--SVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLKD  155 (222)
T ss_pred             heE-----EeeecCCeECCC-CC--EEEEEEEEecCCCCccccCChhhhheeEEecHHHHhCC
Confidence            543     355443222211 11  22345554543  3345678999999999999998754

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.68  E-value=6.7e-16  Score=129.22  Aligned_cols=104  Identities=15%  Similarity=0.180  Sum_probs=77.1

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829            8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG   87 (187)
Q Consensus         8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~   87 (187)
                      +|.++|. .+++|||+||....   +|+|++| ||++++||+         +++||.||++|||||++..     +.+++
T Consensus       134 aViv~V~-~~~~iLL~rr~~~~---~g~wslP-gG~vE~GEs---------~eeAa~REv~EEtGl~v~~-----~~~~~  194 (256)
T PRK00241        134 CIIVAVR-RGDEILLARHPRHR---NGVYTVL-AGFVEVGET---------LEQCVAREVMEESGIKVKN-----LRYVG  194 (256)
T ss_pred             EEEEEEE-eCCEEEEEEccCCC---CCcEeCc-ccCCCCCCC---------HHHHhhhhhhhccCceeee-----eEEEE
Confidence            4444444 45899999986432   7999987 799999999         8999999999999998864     35566


Q ss_pred             EEEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHH
Q 029829           88 RILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        88 ~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~  137 (187)
                      ...+..+       +...+.|.+.. ...+.++.+|+.+++|++++++..+
T Consensus       195 s~~~~~p-------~~lm~~f~a~~~~~~~~~~~~Ei~~a~W~~~del~~l  238 (256)
T PRK00241        195 SQPWPFP-------HSLMLGFHADYDSGEIVFDPKEIADAQWFRYDELPLL  238 (256)
T ss_pred             eEeecCC-------CeEEEEEEEEecCCcccCCcccEEEEEEECHHHCccc
Confidence            5444322       23445666654 3456777789999999999998653

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=5.3e-16  Score=115.31  Aligned_cols=102  Identities=15%  Similarity=0.050  Sum_probs=70.4

Q ss_pred             EEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeE
Q 029829            9 FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGR   88 (187)
Q Consensus         9 v~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~   88 (187)
                      +++++++.+|++||+||....   .+.|++| ||++++||+         +.+||+||++||||+++....     .++.
T Consensus         3 ~~~ii~~~~~~vLL~~r~~~~---~~~w~lP-GG~ve~gEs---------~~~a~~REl~EEtGl~~~~~~-----~~~~   64 (121)
T cd04669           3 ASIVIINDQGEILLIRRIKPG---KTYYVFP-GGGIEEGET---------PEEAAKREALEELGLDVRVEE-----IFLI   64 (121)
T ss_pred             eEEEEEeCCCEEEEEEEecCC---CCcEECC-ceeccCCCC---------HHHHHHHHHHHhhCeeEeeee-----EEEE
Confidence            566777777899999986532   5889997 699999999         899999999999999985432     2333


Q ss_pred             EEEEccCCCCcceeEEEEEEEEec-CCcCCC---------CccccceEEEecHHHHHHH
Q 029829           89 ILYKAPSDGKWGEHELDYLLFIVR-DVSVNP---------NPDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        89 ~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~---------~~~Ev~~~~Wv~~~el~~~  137 (187)
                      +.+  +   .    ...++|.+.. .+.+..         ++++..+++|++++++.++
T Consensus        65 ~~~--~---~----~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l  114 (121)
T cd04669          65 VNQ--N---G----RTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETI  114 (121)
T ss_pred             Eee--C---C----cEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccC
Confidence            322  1   1    1234555543 222111         1345678999999999865

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.65  E-value=2.8e-15  Score=109.61  Aligned_cols=93  Identities=17%  Similarity=0.172  Sum_probs=68.0

Q ss_pred             eCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeEEEEEcc
Q 029829           15 VSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP   94 (187)
Q Consensus        15 ~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~~~y~~~   94 (187)
                      ..+|++||+||+.      |.|++| ||++++||+         +.+||.||+.||||+.+..     +.+++.  |.. 
T Consensus         8 ~~~~~vLlv~r~~------~~w~~P-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~-----~~~~~~--~~~-   63 (112)
T cd04667           8 RRGGRVLLVRKSG------SRWALP-GGKIEPGET---------PLQAARRELQEETGLQGLD-----LLYLFH--VDG-   63 (112)
T ss_pred             ecCCEEEEEEcCC------CcEeCC-CCcCCCCCC---------HHHHHHHHHHHHhCCcccc-----eEEEEE--EeC-
Confidence            3468999999863      788887 699999999         8999999999999998753     234433  221 


Q ss_pred             CCCCcceeEEEEEEEEecC-CcCCCCccccceEEEecHHHHHHH
Q 029829           95 SDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        95 ~~~~~~e~e~~~vf~~~~~-~~~~~~~~Ev~~~~Wv~~~el~~~  137 (187)
                         .   ....++|.+... ......++|+.+++|++++++.++
T Consensus        64 ---~---~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~  101 (112)
T cd04667          64 ---G---STRHHVFVASVPPSAQPKPSNEIADCRWLSLDALGDL  101 (112)
T ss_pred             ---C---CEEEEEEEEEcCCcCCCCCchheeEEEEecHHHhhhc
Confidence               1   234566666543 223334579999999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.64  E-value=3.2e-15  Score=115.13  Aligned_cols=111  Identities=20%  Similarity=0.271  Sum_probs=79.1

Q ss_pred             ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829            6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      ..+|++++... |+|||.||+..  .+.|+|++| ||+++.||+         +++||.||++|||||++..++     .
T Consensus        10 ~~~v~~~i~~~-~~iLLvrR~~~--p~~g~WalP-GG~ve~GEt---------~eeaa~REl~EETgL~~~~~~-----~   71 (145)
T COG1051          10 LVAVGALIVRN-GRILLVRRANE--PGAGYWALP-GGFVEIGET---------LEEAARRELKEETGLRVRVLE-----L   71 (145)
T ss_pred             ceeeeEEEEeC-CEEEEEEecCC--CCCCcEeCC-CccCCCCCC---------HHHHHHHHHHHHhCCccccee-----E
Confidence            34667777665 49999999864  478999998 799999999         899999999999999976543     3


Q ss_pred             eeEEEEEccCCCCcceeEEEEEEEEec-CCcCC-CCccccceEEEecHHHHHHH
Q 029829           86 LGRILYKAPSDGKWGEHELDYLLFIVR-DVSVN-PNPDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~-~~~~Ev~~~~Wv~~~el~~~  137 (187)
                      ++.  |..+..+... +.++++|++.. .+.+. .+.++..++.|++++++..+
T Consensus        72 ~~v--~~~~~rd~r~-~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~l~~~  122 (145)
T COG1051          72 LAV--FDDPGRDPRG-HHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELPEL  122 (145)
T ss_pred             EEE--ecCCCCCCce-eEEEEEEEEEecCCCcccCChhhHhhcceecHhHcccc
Confidence            443  3333222222 44555555554 33333 33358999999999999865

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.63  E-value=2e-14  Score=114.56  Aligned_cols=114  Identities=16%  Similarity=0.051  Sum_probs=84.5

Q ss_pred             eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829            7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL   86 (187)
Q Consensus         7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~   86 (187)
                      .+|.|+.++.++++||.|+.... ..++.|++| ||++++||+         +++||+||++||||+.+..     +.++
T Consensus        48 ~~v~v~~~~~~~~vlLvrq~r~~-~~~~~~elP-aG~ve~gE~---------~~~aA~REl~EEtG~~~~~-----l~~l  111 (185)
T PRK11762         48 GAVMIVPILDDDTLLLIREYAAG-TERYELGFP-KGLIDPGET---------PLEAANRELKEEVGFGARQ-----LTFL  111 (185)
T ss_pred             CEEEEEEEeCCCEEEEEEeecCC-CCCcEEEcc-ceeCCCCCC---------HHHHHHHHHHHHHCCCCcc-----eEEE
Confidence            36788878888899988764332 357889997 699999999         8999999999999998864     3567


Q ss_pred             eEEEEEccCCCCcceeEEEEEEEEecC--CcCCCCccccceEEEecHHHHHHHHHhc
Q 029829           87 GRILYKAPSDGKWGEHELDYLLFIVRD--VSVNPNPDEVAEYKYVNREQLKELLRKA  141 (187)
Q Consensus        87 ~~~~y~~~~~~~~~e~e~~~vf~~~~~--~~~~~~~~Ev~~~~Wv~~~el~~~l~~~  141 (187)
                      +.+.+..    +.. ...+++|++...  .....++.|..++.|++++++.+++..+
T Consensus       112 ~~~~~~~----~~~-~~~~~~f~a~~~~~~~~~~~e~E~i~~~~~~~~e~~~~~~~g  163 (185)
T PRK11762        112 KELSLAP----SYF-SSKMNIVLAEDLYPERLEGDEPEPLEVVRWPLADLDELLARP  163 (185)
T ss_pred             EEEecCC----Ccc-CcEEEEEEEEccccccCCCCCCceeEEEEEcHHHHHHHHHcC
Confidence            7653321    222 346677777641  2234456788899999999999999976

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.62  E-value=3.4e-15  Score=112.76  Aligned_cols=108  Identities=16%  Similarity=0.148  Sum_probs=72.6

Q ss_pred             CCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeEEEEEccCC
Q 029829           17 YSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSD   96 (187)
Q Consensus        17 ~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~~~y~~~~~   96 (187)
                      ++++||.||+..   ..|.|.+| ||++++||+         +.+||+||+.||||+.+... +....+++.+.|..+..
T Consensus        12 ~~~~Llvk~~~~---~~g~W~fP-gG~ve~gEt---------~~eaa~REl~EEtGl~v~~~-~i~~~~~~~~~~~~~~~   77 (132)
T cd04661          12 DTLVLLVQQKVG---SQNHWILP-QGKREEGET---------LRQTAERTLKELCGNNLKAK-FYGNAPVGFYKYKYPKA   77 (132)
T ss_pred             CcEEEEEEeecC---CCCeeECC-cccccCCCC---------HHHHHHHHHHHhhCCCceEE-EEEecCcEEEEEecCcc
Confidence            458999988643   25899998 699999999         89999999999999976531 10001233344444322


Q ss_pred             CCc--ceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHHHH
Q 029829           97 GKW--GEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLR  139 (187)
Q Consensus        97 ~~~--~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~l~  139 (187)
                      ...  ..+...++|.+.. ++.+.++ +|+.+++|++++++.+++.
T Consensus        78 ~~~~~~~~~~~~~f~~~~~~g~~~~~-~e~~~~~W~~~~el~~~l~  122 (132)
T cd04661          78 VRNEGIVGAKVFFFKARYMSGQFELS-QNQVDFKWLAKEELQKYLN  122 (132)
T ss_pred             cccccCcccEEEEEEEEEecCccccC-CCcceeEecCHHHHHhhcC
Confidence            110  1123556777764 4444443 7899999999999998754

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>TIGR00586 mutt mutator mutT protein

Probab=99.62  E-value=1.6e-14  Score=107.09  Aligned_cols=109  Identities=16%  Similarity=0.005  Sum_probs=74.7

Q ss_pred             eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829            7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL   86 (187)
Q Consensus         7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~   86 (187)
                      ..+.+++++.+|++||+||.... .++|+|++| ||+++.||+         +.+|++||+.||+|+.+...     ..+
T Consensus         5 ~~~~~ii~~~~~~vLl~~R~~~~-~~~g~w~~P-gg~ve~ge~---------~~~~~~RE~~EE~g~~~~~~-----~~~   68 (128)
T TIGR00586         5 QIAVGIIRNENGEIIITRRADGH-MFAKLLEFP-GGKEEGGET---------PEQAVVRELEEEIGIPQHFS-----EFE   68 (128)
T ss_pred             EEEEEEEECCCCEEEEEEEeCCC-CCCCeEECC-CcccCCCCC---------HHHHHHHHHHHHHCCcceee-----eEE
Confidence            34444556777899999998654 589999998 799999999         78999999999999987532     234


Q ss_pred             eEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHH
Q 029829           87 GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        87 ~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~  137 (187)
                      +.+....+.  .   +...++|.+...... +...+..+++|++++++..+
T Consensus        69 ~~~~h~~~~--~---~~~~~~~~~~~~~~~-~~~~~~~~~~W~~~~~l~~~  113 (128)
T TIGR00586        69 KLEYEFYPR--H---ITLWFWLLERWEGGP-PGKEGQPEEWWVLVGLLADD  113 (128)
T ss_pred             EEEEEECCC--c---EEEEEEEEEEEcCCC-cCcccccccEEeCHHHCCcc
Confidence            443333221  1   223455555542221 12346678899999998864

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.61  E-value=9e-15  Score=109.77  Aligned_cols=102  Identities=16%  Similarity=0.095  Sum_probs=73.2

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829            8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG   87 (187)
Q Consensus         8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~   87 (187)
                      ++++++++. |+|||.||...  ..+|.|++| ||++++||+         +.+||+||++||||+++...     ..++
T Consensus        15 ~v~~ii~~~-~~vLL~kr~~~--~~~g~w~lP-gG~ve~gE~---------~~~a~~REl~EEtGl~~~~~-----~~~~   76 (130)
T cd04511          15 IVGCVPEWE-GKVLLCRRAIE--PRHGFWTLP-AGFMENGET---------TEQGALRETWEEAGARVEID-----GLYA   76 (130)
T ss_pred             EEEEEEecC-CEEEEEEecCC--CCCCeEECC-cccccCCCC---------HHHHHHHHHHHHhCCEEEee-----eEEE
Confidence            455566654 89999999754  367999998 799999999         89999999999999987532     2233


Q ss_pred             EEEEEccCCCCcceeEEEEEEEEecC-CcCCCCccccceEEEecHHHHH
Q 029829           88 RILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLK  135 (187)
Q Consensus        88 ~~~y~~~~~~~~~e~e~~~vf~~~~~-~~~~~~~~Ev~~~~Wv~~~el~  135 (187)
                      .  |..+.   .  +...++|.+... ..+.. ..|..+.+|++++++.
T Consensus        77 ~--~~~~~---~--~~~~~~f~~~~~~~~~~~-~~e~~~~~~~~~~~l~  117 (130)
T cd04511          77 V--YSVPH---I--SQVYMFYRARLLDLDFAP-GPESLEVRLFTEEEIP  117 (130)
T ss_pred             E--EecCC---c--eEEEEEEEEEEcCCcccC-CcchhceEEECHHHCC
Confidence            2  33221   1  335566666653 33333 3688999999999996

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.61  E-value=3.1e-14  Score=123.54  Aligned_cols=132  Identities=11%  Similarity=0.090  Sum_probs=84.7

Q ss_pred             eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829            7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL   86 (187)
Q Consensus         7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~   86 (187)
                      .++.++|+. +|+|||+||+..  ..+|.|.+| ||++++||+         +.+||+||++|||||++....+. ....
T Consensus       204 vtv~avv~~-~g~VLLvrR~~~--p~~g~W~lP-GG~ve~gEt---------~~~Aa~REl~EETGl~v~~~~l~-~~~~  269 (340)
T PRK05379        204 VTVDAVVVQ-SGHVLLVRRRAE--PGKGLWALP-GGFLEQDET---------LLDACLRELREETGLKLPEPVLR-GSIR  269 (340)
T ss_pred             eEEEEEEEE-CCEEEEEEecCC--CCCCeEECC-cccCCCCCC---------HHHHHHHHHHHHHCCcccccccc-eeee
Confidence            456666655 689999999764  348999998 799999999         89999999999999987643321 0001


Q ss_pred             eEEEEEccCCCCcceeEEEEEEEEecC-Cc-C-CCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 029829           87 GRILYKAPSDGKWGEHELDYLLFIVRD-VS-V-NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL  162 (187)
Q Consensus        87 ~~~~y~~~~~~~~~e~e~~~vf~~~~~-~~-~-~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l  162 (187)
                      ....|..+.....+ +.+.++|.+... .. + ....+|+.+++|++++++..+-         ..+-.....++..|+
T Consensus       270 ~~~~f~~p~r~~~~-~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~~---------~~~~~dh~~ii~~~~  338 (340)
T PRK05379        270 DQQVFDHPGRSLRG-RTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLAMR---------DRMFEDHFQIITHFL  338 (340)
T ss_pred             eeEEEcCCCCCCCC-cEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhhhh---------hhhhhHHHHHHHHHh
Confidence            11123333211111 345566665432 11 1 2234789999999999998651         123355667777764

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.60  E-value=2.5e-14  Score=107.77  Aligned_cols=112  Identities=13%  Similarity=-0.002  Sum_probs=72.5

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829            8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG   87 (187)
Q Consensus         8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~   87 (187)
                      +|.++|+++ |+|||++|..     .+.|.+| ||++++||+         +.+||+||++||||+.+...    ...++
T Consensus         2 ~~~~ii~~~-~~vLLv~~~~-----~~~w~lP-gG~ve~gEt---------~~~aa~REl~EEtGl~~~~~----~~~l~   61 (131)
T cd04686           2 AVRAIILQG-DKILLLYTKR-----YGDYKFP-GGGVEKGED---------HIEGLIRELQEETGATNIRV----IEKFG   61 (131)
T ss_pred             cEEEEEEEC-CEEEEEEEcC-----CCcEECc-cccCCCCCC---------HHHHHHHHHHHHHCCccccc----ceEEE
Confidence            677777774 8999988753     2579887 699999999         89999999999999986321    12344


Q ss_pred             EEEEEcc--CCCCcceeEEEEEEEEecC---CcCCCCcccc---ceEEEecHHHHHHHHH
Q 029829           88 RILYKAP--SDGKWGEHELDYLLFIVRD---VSVNPNPDEV---AEYKYVNREQLKELLR  139 (187)
Q Consensus        88 ~~~y~~~--~~~~~~e~e~~~vf~~~~~---~~~~~~~~Ev---~~~~Wv~~~el~~~l~  139 (187)
                      .+....+  ..+...-+.+.++|++...   ..+.++..|.   ..++|++++++.+.-.
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~~~  121 (131)
T cd04686          62 TYTERRPWRKPDADIFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEHNE  121 (131)
T ss_pred             EEEeeccccCCCCceeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHhhH
Confidence            4322111  1111111345566766542   2233443343   3589999999987543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.51  E-value=2.5e-13  Score=108.60  Aligned_cols=114  Identities=16%  Similarity=0.089  Sum_probs=81.0

Q ss_pred             EEEEEEEeCC-CeEEEEEecCCC----CCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCC
Q 029829            8 IFSILGFVSY-SVMSGQQRSGTK----VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE   82 (187)
Q Consensus         8 av~v~i~~~~-g~vLL~rRs~~k----~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~   82 (187)
                      +|++++++.+ +++||.++-...    ..-+..|++| ||++++||+         +++||+||++||||+.+..     
T Consensus        46 ~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelP-aG~ve~gE~---------~~~aA~REl~EEtG~~~~~-----  110 (185)
T TIGR00052        46 AAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELS-AGMVEKGES---------PEDVARREAIEEAGYQVKN-----  110 (185)
T ss_pred             eEEEEEEECCCCEEEEEECceeeeeecCCcceEEEEC-cEecCCCCC---------HHHHHHHHccccccceecc-----
Confidence            7788888764 788887642211    1146889997 699999999         8999999999999999864     


Q ss_pred             eeeeeEEEEEccCCCCcceeEEEEEEEEecCC-----cCCCCccccceEEEecHHHHHHHHHhc
Q 029829           83 FTPLGRILYKAPSDGKWGEHELDYLLFIVRDV-----SVNPNPDEVAEYKYVNREQLKELLRKA  141 (187)
Q Consensus        83 l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~-----~~~~~~~Ev~~~~Wv~~~el~~~l~~~  141 (187)
                      +.+++.+ |..+   +.. .+.+++|++..+.     ....+++|..++.|++++++.+++..+
T Consensus       111 ~~~~~~~-~~~~---g~~-~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G  169 (185)
T TIGR00052       111 LRKLLSF-YSSP---GGV-TELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEG  169 (185)
T ss_pred             eEEEEEE-EcCC---CCC-cEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcC
Confidence            3456553 2222   222 4677888886421     112234566789999999999999986

>PRK08999 hypothetical protein; Provisional

Probab=99.50  E-value=4.3e-13  Score=114.47  Aligned_cols=108  Identities=19%  Similarity=0.107  Sum_probs=75.5

Q ss_pred             eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829            7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL   86 (187)
Q Consensus         7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~   86 (187)
                      ..+.+++++.+|++||+||..+. .++|+|++| ||++++||+         +.+|+.||++||+|+.+...     ..+
T Consensus         6 ~~~~~vi~~~~~~vLL~kR~~~~-~~~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~~~-----~~l   69 (312)
T PRK08999          6 HVAAGVIRDADGRILLARRPEGK-HQGGLWEFP-GGKVEPGET---------VEQALARELQEELGIEVTAA-----RPL   69 (312)
T ss_pred             EEEEEEEECCCCeEEEEEecCCC-CCCCeEECC-ccCCCCCCC---------HHHHHHHHHHHHhCCceecc-----eeE
Confidence            34555566777899999997654 589999998 699999999         78999999999999987643     224


Q ss_pred             eEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHH
Q 029829           87 GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKE  136 (187)
Q Consensus        87 ~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~  136 (187)
                      +.+.+..+.  .   ....++|.+.... ..++..|..+++|++++++.+
T Consensus        70 ~~~~h~~~~--~---~~~i~~y~~~~~~-~~~~~~e~~~~~Wv~~~el~~  113 (312)
T PRK08999         70 ITVRHDYPD--K---RVRLDVRRVTAWQ-GEPHGREGQPLAWVAPDELAV  113 (312)
T ss_pred             EEEEEEcCC--C---eEEEEEEEEEEec-CcccCccCCccEEecHHHccc
Confidence            444333321  1   1233555554321 123456788999999999875

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.49  E-value=2.3e-12  Score=104.45  Aligned_cols=115  Identities=17%  Similarity=0.149  Sum_probs=81.4

Q ss_pred             eEEEEEEEeCC-CeEEEEE--ecCCC--CCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 029829            7 NIFSILGFVSY-SVMSGQQ--RSGTK--VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD   81 (187)
Q Consensus         7 ~av~v~i~~~~-g~vLL~r--Rs~~k--~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~   81 (187)
                      .+|.|+.++++ ++|+|.+  |....  ...+-.|++| +|.+++||+         +.+||+|||.||||+.+..    
T Consensus        50 ~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~P-AG~vd~gE~---------p~~aA~REL~EETGy~a~~----  115 (202)
T PRK10729         50 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMV-AGMIEEGES---------VEDVARREAIEEAGLIVGR----  115 (202)
T ss_pred             CeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEcc-ceEcCCCCC---------HHHHHHHHHHHHhCceeeE----
Confidence            37888888864 6877755  54221  0124578887 699999999         8999999999999999764    


Q ss_pred             CeeeeeEEEEEccCCCCcceeEEEEEEEEecCC----c--CCCCccccceEEEecHHHHHHHHHhc
Q 029829           82 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDV----S--VNPNPDEVAEYKYVNREQLKELLRKA  141 (187)
Q Consensus        82 ~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~----~--~~~~~~Ev~~~~Wv~~~el~~~l~~~  141 (187)
                       +.+++.+ |..+   +.. .+.+++|++..+.    .  ...+++|..++.|++++++.+++.++
T Consensus       116 -~~~l~~~-~~sp---g~~-~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G  175 (202)
T PRK10729        116 -TKPVLSY-LASP---GGT-SERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEG  175 (202)
T ss_pred             -EEEEEEE-EcCC---CcC-ceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcC
Confidence             3556543 2222   333 4577888876311    1  23566788889999999999999876

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=99.46  E-value=1.8e-13  Score=114.65  Aligned_cols=107  Identities=15%  Similarity=0.244  Sum_probs=77.6

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829            8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG   87 (187)
Q Consensus         8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~   87 (187)
                      +|-|++.+. +++||.+|..   ++||+++.. +|.|++|||         +++|+.||+.||+||.+..+     +|++
T Consensus       146 ~vIv~v~~~-~~ilLa~~~~---h~~g~yS~L-AGFVE~GET---------lE~AV~REv~EE~Gi~V~~v-----rY~~  206 (279)
T COG2816         146 CVIVAVIRG-DEILLARHPR---HFPGMYSLL-AGFVEPGET---------LEQAVAREVFEEVGIKVKNV-----RYVG  206 (279)
T ss_pred             eEEEEEecC-CceeecCCCC---CCCcceeee-eecccCCcc---------HHHHHHHHHHHhhCeEEeee-----eEEe
Confidence            444555554 4578877654   469999985 699999999         99999999999999999753     4555


Q ss_pred             EEEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHHHHh
Q 029829           88 RILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRK  140 (187)
Q Consensus        88 ~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~l~~  140 (187)
                      +..+-.|.       ...--|.+.. ++++++|..|+.+++|++.+|+..++..
T Consensus       207 SQPWPfP~-------SLMigf~aey~sgeI~~d~~Eleda~WFs~~evl~~L~~  253 (279)
T COG2816         207 SQPWPFPH-------SLMLGFMAEYDSGEITPDEGELEDARWFSRDEVLPALPP  253 (279)
T ss_pred             ccCCCCch-------hhhhhheeeeccccccCCcchhhhccccCHhHHhhhcCC
Confidence            43332222       2222233443 4668999999999999999998877764

>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]

Probab=99.45  E-value=9.4e-14  Score=113.77  Aligned_cols=129  Identities=19%  Similarity=0.192  Sum_probs=105.4

Q ss_pred             eEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeEEEEEccCCCC
Q 029829           19 VMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGK   98 (187)
Q Consensus        19 ~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~~~y~~~~~~~   98 (187)
                      ++|++|||++|.+|||+|||.+||.+..|-+         +.++|++|..||..|+...  ..++...|.++|..-....
T Consensus       149 ~iWvprRS~TKqTWP~~lDN~vaGGl~~g~g---------I~eT~iKE~~EEAnl~~~~--~~Nlv~~G~VSy~~~esr~  217 (306)
T KOG4313|consen  149 CIWVPRRSNTKQTWPGKLDNMVAGGLSVGFG---------IKETAIKEAAEEANLPSDL--VKNLVSAGCVSYYKFESRQ  217 (306)
T ss_pred             EEEecccCCccccCcchhhhhhccccccCch---------HHHHHHHHHHHhcCCchhh--HhcceecceeEEEeeehhh
Confidence            7999999999999999999999999999987         9999999999999998843  2467788888887432222


Q ss_pred             cceeEEEEEEEEecC--CcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHHH
Q 029829           99 WGEHELDYLLFIVRD--VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKW  165 (187)
Q Consensus        99 ~~e~e~~~vf~~~~~--~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l~~~  165 (187)
                      ....+..|||....+  .-+++++.||+.+..+++.|..+.+..-       .|.|.++.++-+||-++
T Consensus       218 ~~~pe~qYVfDL~l~~d~iP~~nDGEV~~F~Lltl~~~v~~l~~k-------~FKpncAlV~iDflirH  279 (306)
T KOG4313|consen  218 GLFPETQYVFDLELPLDFIPQNNDGEVQAFELLTLKDCVERLFTK-------DFKPNCALVVIDFLIRH  279 (306)
T ss_pred             ccCccceEEEeccCchhhcCCCCCCceeeEeeecHHHHHHHHHhh-------ccCCCcceEEEEEeecc
Confidence            222567788888753  4567888999999999999999888864       79999998887776443

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.44  E-value=2.7e-12  Score=96.65  Aligned_cols=59  Identities=19%  Similarity=0.121  Sum_probs=46.8

Q ss_pred             EEEEEEEeC---CCeEEEEEecCC--CCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 029829            8 IFSILGFVS---YSVMSGQQRSGT--KVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE   76 (187)
Q Consensus         8 av~v~i~~~---~g~vLL~rRs~~--k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~   76 (187)
                      ++++++++.   ..+|||++|...  .....|.|++| ||+++.||+         +.+||+||+.||||+++.
T Consensus         2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lP-gG~ie~~E~---------~~~aA~REl~EEtGl~~~   65 (126)
T cd04662           2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIP-KGEYTEGED---------PLLAAKREFSEETGFCVD   65 (126)
T ss_pred             eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECC-cccCCCCcC---------HHHHHHHHHHHHhCCcce
Confidence            566777652   237999987433  23567999998 799999999         899999999999999876

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.38  E-value=3.8e-11  Score=96.53  Aligned_cols=114  Identities=15%  Similarity=0.043  Sum_probs=79.0

Q ss_pred             eEEEEEEEeC-CCeEEEEE--ecCC-CCC--CCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCC
Q 029829            7 NIFSILGFVS-YSVMSGQQ--RSGT-KVT--FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV   80 (187)
Q Consensus         7 ~av~v~i~~~-~g~vLL~r--Rs~~-k~~--~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~   80 (187)
                      .+|+|++++. +++++|.|  |... ...  -+-.|++| +|.++++ +         +++||+|||.||||+.+..   
T Consensus        46 ~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElP-AG~vd~~-~---------p~~aA~REL~EETGy~a~~---  111 (191)
T PRK15009         46 NGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETC-AGLLDND-E---------PEVCIRKEAIEETGYEVGE---  111 (191)
T ss_pred             CEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEe-ccccCCC-C---------HHHHHHHHHHHhhCCccce---
Confidence            4778888886 56888765  5432 001  12457776 5888864 5         7999999999999998864   


Q ss_pred             CCeeeeeEEEEEccCCCCcceeEEEEEEEEecC-----CcCCCCccccceEEEecHHHHHHHHHhc
Q 029829           81 DEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD-----VSVNPNPDEVAEYKYVNREQLKELLRKA  141 (187)
Q Consensus        81 ~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~-----~~~~~~~~Ev~~~~Wv~~~el~~~l~~~  141 (187)
                        +.+++.+ |..+   +.. .+.+++|++...     .....+++|..++.|+|++++.+++..+
T Consensus       112 --~~~l~~~-~~sp---G~s-~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G  170 (191)
T PRK15009        112 --VRKLFEL-YMSP---GGV-TELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTG  170 (191)
T ss_pred             --EEEeeEE-EcCC---ccc-CcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcC
Confidence              4556653 3332   333 567788888642     1122456788999999999999999986

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]

Probab=99.33  E-value=7.9e-12  Score=101.95  Aligned_cols=114  Identities=19%  Similarity=0.097  Sum_probs=80.8

Q ss_pred             eEEEEEEEeC-CC--eEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCe
Q 029829            7 NIFSILGFVS-YS--VMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF   83 (187)
Q Consensus         7 ~av~v~i~~~-~g--~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l   83 (187)
                      .+|.+.+++. +|  +|||+|||.+-..++|.-++| ||..++.+.+        -..+|.||.+||+|++...+.+   
T Consensus        44 ~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fP-GG~~d~~D~s--------~~~tAlREt~EEIGl~~~~~~~---  111 (246)
T KOG3069|consen   44 AAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFP-GGRRDPHDKS--------DIQTALRETEEEIGLDPELVDV---  111 (246)
T ss_pred             ccEEEEEEEcCCCceEEEEEeccccccccCCceeCC-CCcCCccccc--------hHHHHHHHHHHHhCCCHHHhhh---
Confidence            4777777776 44  799999999999999999998 6999998875        5799999999999999975432   


Q ss_pred             eeeeEEE-EEccCCCCcceeEEEEEEEEecC---CcCCCCccccceEEEecHHHHHHHH
Q 029829           84 TPLGRIL-YKAPSDGKWGEHELDYLLFIVRD---VSVNPNPDEVAEYKYVNREQLKELL  138 (187)
Q Consensus        84 ~~~~~~~-y~~~~~~~~~e~e~~~vf~~~~~---~~~~~~~~Ev~~~~Wv~~~el~~~l  138 (187)
                        +|... +..+.  ++.  ....|.+....   ....+|++||.++.||+++++..-.
T Consensus       112 --~g~l~~~~~r~--~~~--v~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~~~  164 (246)
T KOG3069|consen  112 --LGALPPFVLRS--GWS--VFPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLLPK  164 (246)
T ss_pred             --hhhccceeecc--Ccc--cceeEEEEecccccccccCCchheeeeeeeeHHHHhhhh
Confidence              33211 11111  111  11122222222   4567899999999999999988643

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.32  E-value=7e-11  Score=92.11  Aligned_cols=113  Identities=12%  Similarity=0.118  Sum_probs=78.6

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829            8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG   87 (187)
Q Consensus         8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~   87 (187)
                      +|.++.+. ++++||.++..      ..|++| ||++++||+         +.+||+||+.||||+.+..     +.++|
T Consensus        26 ~V~ii~~~-~~~~LL~~~~~------~~~elP-gG~vE~gEt---------~~eaA~REl~EETG~~~~~-----~~~lg   83 (156)
T TIGR02705        26 HVLVIPRY-KDQWLLTEHKR------RGLEFP-GGKVEPGET---------SKEAAIREVMEETGAIVKE-----LHYIG   83 (156)
T ss_pred             EEEEEEEE-CCEEEEEEEcC------CcEECC-ceecCCCCC---------HHHHHHHHHHHHhCcEeee-----eEEEE
Confidence            45555454 45888876542      347776 699999999         8999999999999998764     45677


Q ss_pred             EEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEE-EecHHHHHHHHHhccCCCCCcccChhHH
Q 029829           88 RILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYK-YVNREQLKELLRKADAGEEGLKLSPWFR  155 (187)
Q Consensus        88 ~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~-Wv~~~el~~~l~~~~~~~~~~~~~p~~~  155 (187)
                      .+..  ....  . ....++|++... ..... +|..+.. +++++++.+++..+      ..||..++
T Consensus        84 ~~~~--~~~~--~-~~~~~vf~A~~~-~~~~~-~e~~E~~~~~~~~~~~~~~~~g------~~~s~~~~  139 (156)
T TIGR02705        84 QYEV--EGES--T-DFVKDVYFAEVS-ALESK-DDYLETKGPVLLQEIPDIIKAD------PRFSFIMK  139 (156)
T ss_pred             EEEe--cCCC--c-EEEEEEEEEEEe-ccccC-CCceeeEeEEEHHHHHHHHhcC------CcccEEEc
Confidence            6432  2221  2 456788888754 12233 5656666 79999999999876      46777666

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.32  E-value=3e-11  Score=89.99  Aligned_cols=100  Identities=14%  Similarity=0.061  Sum_probs=69.3

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829            8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG   87 (187)
Q Consensus         8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~   87 (187)
                      +|.|+++++ +++||.+|.      .+.|++| ||++++||+         +.+||+||+.||+|+.+..     +.+++
T Consensus         2 ~v~vi~~~~-~~vLl~~~~------~~~w~lP-gG~ve~gE~---------~~~aa~REl~EE~G~~~~~-----~~~l~   59 (118)
T cd04665           2 SVLVICFYD-DGLLLVRHK------DRGWEFP-GGHVEPGET---------IEEAARREVWEETGAELGS-----LTLVG   59 (118)
T ss_pred             EEEEEEEEC-CEEEEEEeC------CCEEECC-ccccCCCCC---------HHHHHHHHHHHHHCCccCc-----eEEEE
Confidence            456666664 788888774      2568887 699999999         8999999999999999854     35676


Q ss_pred             EEEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHH
Q 029829           88 RILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQL  134 (187)
Q Consensus        88 ~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el  134 (187)
                      .+.+..  ...   ....++|.+.. .........|+....|++....
T Consensus        60 ~~~~~~--~~~---~~~~~~y~a~~~~~~~~~~~~E~~~~~~~~~~~~  102 (118)
T cd04665          60 YYQVDL--FES---GFETLVYPAVSAQLEEKASYLETDGPVLFKNEPE  102 (118)
T ss_pred             EEEecC--CCC---cEEEEEEEEEEEecccccccccccCcEEeccCCc
Confidence            643332  111   23456666654 2222223489999999997654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.27  E-value=1e-10  Score=87.23  Aligned_cols=102  Identities=19%  Similarity=0.101  Sum_probs=60.8

Q ss_pred             EEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeE
Q 029829            9 FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGR   88 (187)
Q Consensus         9 v~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~   88 (187)
                      +.+++...++ +||.+|+..  .++|.|.+| ||++++||+         +.+||.||+.||+|+.+....   +..+..
T Consensus         7 av~vl~~~~~-~lL~~r~~~--~~~~~w~lP-gG~ve~~E~---------~~~aa~REl~EE~g~~~~~~~---l~~~~~   70 (118)
T cd04674           7 VVALLPVDDG-LLVIRRGIE--PGRGKLALP-GGFIELGET---------WQDAVARELLEETGVAVDPAD---IRLFDV   70 (118)
T ss_pred             EEEEEEECCC-EEEEEeecC--CCCCeEECC-ceecCCCCC---------HHHHHHHHHHHHHCCcccccE---EEEEEE
Confidence            3334444445 555556532  358999997 699999999         899999999999999886321   222211


Q ss_pred             EEEEccCCCCcceeEEEEEEEEec-CCcC--CCCccccceEEEecHHH
Q 029829           89 ILYKAPSDGKWGEHELDYLLFIVR-DVSV--NPNPDEVAEYKYVNREQ  133 (187)
Q Consensus        89 ~~y~~~~~~~~~e~e~~~vf~~~~-~~~~--~~~~~Ev~~~~Wv~~~e  133 (187)
                        |..+.  .   +.+.+.|.... ....  .....|.+++.|+....
T Consensus        71 --~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~  111 (118)
T cd04674          71 --RSAPD--G---TLLVFGLLPERRAADLPPFEPTDETTERAVVTAPS  111 (118)
T ss_pred             --EecCC--C---eEEEEEEEeccccccCCCCCCCcceeeEEEccCCc
Confidence              22221  1   23444444433 2222  22346777777776544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]

Probab=99.23  E-value=7.9e-12  Score=105.75  Aligned_cols=136  Identities=20%  Similarity=0.220  Sum_probs=87.9

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829            8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG   87 (187)
Q Consensus         8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~   87 (187)
                      .|-.+|.+.+|+.+|..|.  +.+-||+|+++ +|.+++|||         +++||+||+.||+||++..+.     +. 
T Consensus       189 vVIm~li~~d~~~~LL~R~--~r~~~gl~t~l-AGFlEpGES---------~eeav~REtwEEtGi~V~~I~-----~~-  250 (345)
T KOG3084|consen  189 VVIMLLIDHDGKHALLGRQ--KRYPPGLWTCL-AGFLEPGES---------IEEAVRRETWEETGIEVEVIS-----YV-  250 (345)
T ss_pred             eEEEEEEcCCCCEeeeecc--cCCCCchhhhh-hccCCcccc---------HHHHHHHHHHHHhCceeeeEe-----ee-
Confidence            5667778888865555563  34568999986 699999999         999999999999999997542     11 


Q ss_pred             EEEEEccCCCCcceeEEE-EEE-EEecCCcCCCCcc-ccceEEEecHHHHHHHHHh-ccCC-C--CCcccChhHHHHHHH
Q 029829           88 RILYKAPSDGKWGEHELD-YLL-FIVRDVSVNPNPD-EVAEYKYVNREQLKELLRK-ADAG-E--EGLKLSPWFRLVVDN  160 (187)
Q Consensus        88 ~~~y~~~~~~~~~e~e~~-~vf-~~~~~~~~~~~~~-Ev~~~~Wv~~~el~~~l~~-~~~~-~--~~~~~~p~~~~~~~~  160 (187)
                         -.+|.. .+. ..+. .++ ++..+..+..+.+ |..+++|++-+++.+.+.. +--+ +  ...-+.|.-..+..+
T Consensus       251 ---asQPWP-~~p-~SLMIgc~ala~~~~~I~vd~dlEleDaqwF~r~ev~~aL~~kg~~Rv~~~~a~i~~P~~~aIA~q  325 (345)
T KOG3084|consen  251 ---ASQPWP-LMP-QSLMIGCLALAKLNGKISVDKDLELEDAQWFDREEVKSALTTKGLVRVQIEKALILIPPPFAIAHQ  325 (345)
T ss_pred             ---ecCCCC-CCc-hHHHHHHHHHHhhCCccccCcchhhhhcccccHHHHHHHHHhcCCccccccCcceecCChhHHHHH
Confidence               122221 111 1111 111 1223567778877 9999999999999998873 3100 0  113455655555555


Q ss_pred             HHHHHH
Q 029829          161 FLFKWW  166 (187)
Q Consensus       161 ~l~~~~  166 (187)
                      .+..|.
T Consensus       326 LI~~~~  331 (345)
T KOG3084|consen  326 LILHWV  331 (345)
T ss_pred             HHHHHH
Confidence            555553

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=99.21  E-value=1.5e-10  Score=92.71  Aligned_cols=100  Identities=11%  Similarity=0.117  Sum_probs=61.2

Q ss_pred             eEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCC---------e--eeee
Q 029829           19 VMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE---------F--TPLG   87 (187)
Q Consensus        19 ~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~---------l--~~~~   87 (187)
                      ++|+.||+.     +|.|.+| ||+++++|+         +.+||.||+.||||+.+..+....         +  ..+.
T Consensus        50 ~vLl~~r~~-----~g~walP-GG~v~~~E~---------~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~~~~  114 (186)
T cd03670          50 QFVAIKRPD-----SGEWAIP-GGMVDPGEK---------ISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDGVE  114 (186)
T ss_pred             EEEEEEeCC-----CCcCcCC-eeeccCCCC---------HHHHHHHHHHHHHcccccccchhhhhhcchhhhhcccccE
Confidence            688888853     5899997 799999998         899999999999987653322110         0  0122


Q ss_pred             EEEEEccC------CCCcceeEEEEEEEEecCC---cCCC-CccccceEEEecHHHHHH
Q 029829           88 RILYKAPS------DGKWGEHELDYLLFIVRDV---SVNP-NPDEVAEYKYVNREQLKE  136 (187)
Q Consensus        88 ~~~y~~~~------~~~~~e~e~~~vf~~~~~~---~~~~-~~~Ev~~~~Wv~~~el~~  136 (187)
                      .  |....      ++.+. ..+.|.|.+....   ...+ ..+|..+++|++++++..
T Consensus       115 v--y~~~~~dpr~td~~w~-~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~~l~~  170 (186)
T cd03670         115 V--YKGYVDDPRNTDNAWM-ETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDSKLP  170 (186)
T ss_pred             E--EeccccCCCCCCcceE-EEEEEEEEecCcccccccccCCCCchheeEEEEcccccc
Confidence            2  32111      11222 2344545442111   1222 246899999999999764

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>PLN03143 nudix hydrolase; Provisional

Probab=99.18  E-value=1e-09  Score=93.35  Aligned_cols=116  Identities=14%  Similarity=0.011  Sum_probs=72.3

Q ss_pred             eEEEEEEE-eCCCe--EEEEEecCCCCCCCCceeeccccCCCCC-CChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCC
Q 029829            7 NIFSILGF-VSYSV--MSGQQRSGTKVTFPLVWTNTCCSHPLYR-ESELIEENALGVRNAAQRKLLDELGICAEDVPVDE   82 (187)
Q Consensus         7 ~av~v~i~-~~~g~--vLL~rRs~~k~~~pG~W~~~~gGhve~g-Es~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~   82 (187)
                      .+|+|++. +.+|+  ++|.++..... -.-.|++| ||.++++ |+         +.+||+||++||||+.+....   
T Consensus       129 ~aVaVL~~l~~~ge~~VlLVrQ~R~pv-g~~~lE~P-AG~lD~~~ed---------p~~aA~REL~EETG~~~~a~~---  194 (291)
T PLN03143        129 PAVAVLILLESEGETYAVLTEQVRVPV-GKFVLELP-AGMLDDDKGD---------FVGTAVREVEEETGIKLKLED---  194 (291)
T ss_pred             CeEEEEEEEeCCCCEEEEEEEeEecCC-CcEEEEec-ccccCCCCCC---------HHHHHHHHHHHHHCCccccce---
Confidence            37777765 55565  77766543211 12378887 6888975 66         899999999999999864322   


Q ss_pred             eeeeeE--------EEEEccCCCCcceeEEEEEEEEecCCc------------CCCCccccceEEEecHHHHHHHHHh
Q 029829           83 FTPLGR--------ILYKAPSDGKWGEHELDYLLFIVRDVS------------VNPNPDEVAEYKYVNREQLKELLRK  140 (187)
Q Consensus        83 l~~~~~--------~~y~~~~~~~~~e~e~~~vf~~~~~~~------------~~~~~~Ev~~~~Wv~~~el~~~l~~  140 (187)
                      +..+..        -.|..   .+.. .+.+++|++.....            ...+.+|..++.|++++++..++..
T Consensus       195 lv~L~~~~~~~~g~~v~ps---pG~~-dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD  268 (291)
T PLN03143        195 MVDLTAFLDPSTGCRMFPS---PGGC-DEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTAD  268 (291)
T ss_pred             EEEeeeccccCcCceEEec---CCcc-CCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHh
Confidence            222321        11222   2333 34556776543211            1235678889999999999888753

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.18  E-value=3.2e-10  Score=83.43  Aligned_cols=115  Identities=18%  Similarity=0.198  Sum_probs=67.6

Q ss_pred             EEEEEEEeCC-CeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHH-HHHHHHHHHhCCCccCCCCCCeee
Q 029829            8 IFSILGFVSY-SVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRN-AAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         8 av~v~i~~~~-g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~-Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      ++.+++.... +++|+++|....    |.|.+| ||+++++|+         +.+ ||+||+.||||+.+...   .+..
T Consensus        13 ~~~~~~~~~~~~~vl~~~~~~~~----~~~~~P-gG~ve~~e~---------~~~~aa~RE~~EEtGl~~~~~---~~~~   75 (161)
T COG0494          13 AVAVLVGRDGPGEVLLAQRRDDG----GLWELP-GGKVEPGEE---------LPEEAAARELEEETGLRVKDE---RLEL   75 (161)
T ss_pred             eEEEEEecCCCCEEeEEEccccC----CceecC-CcccCCCCc---------hHHHHHHHHHHHHhCCeeeee---ccee
Confidence            4445444443 789999987653    689987 699999998         355 99999999999998741   1233


Q ss_pred             eeEEEEEccCCCCcceeEEEEEEEEec----CCcCCCC---ccccceEEEecHHHHHHHHH
Q 029829           86 LGRILYKAPSDGKWGEHELDYLLFIVR----DVSVNPN---PDEVAEYKYVNREQLKELLR  139 (187)
Q Consensus        86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~----~~~~~~~---~~Ev~~~~Wv~~~el~~~l~  139 (187)
                      ++.+.................++....    ...+..+   ..|...+.|+++.++.....
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~  136 (161)
T COG0494          76 LGEFPPSPGDGSSVGGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALVL  136 (161)
T ss_pred             eeeccCcccCcccccceEEEEEEeeeccccccccccccCCCcchhhceeeeeHHHcccccc
Confidence            443322221111000011111111111    1111111   36899999999999886544

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.08  E-value=1.7e-09  Score=81.57  Aligned_cols=52  Identities=13%  Similarity=-0.070  Sum_probs=39.4

Q ss_pred             EEEEEEEeCCC--eEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCc
Q 029829            8 IFSILGFVSYS--VMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICA   75 (187)
Q Consensus         8 av~v~i~~~~g--~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~   75 (187)
                      .+.+++.+.++  +||+.|+..      +.|.+| ||++++||+         +.+||+||++||||+..
T Consensus         2 ~~~~~~~~~~~~~~ll~~r~~~------~~~~lP-gG~ve~~E~---------~~~aa~Rel~EEtGl~~   55 (126)
T cd04663           2 KCPAVLRRNGEVLELLVFEHPL------AGFQIV-KGTVEPGET---------PEAAALRELQEESGLPS   55 (126)
T ss_pred             EEEEEEEeCCceEEEEEEEcCC------CcEECC-CccCCCCCC---------HHHHHHHHHHHHHCCee
Confidence            35566666554  565554432      348776 699999999         89999999999999987

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=99.04  E-value=1.3e-08  Score=73.78  Aligned_cols=104  Identities=13%  Similarity=0.056  Sum_probs=65.9

Q ss_pred             ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829            6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      ++.+.++++.++|++||+||... ..|+|+|++| +|.++.+++         ..++..|++.+|.++...        .
T Consensus         2 ~~~~~~~ii~~~~~~ll~kR~~~-gl~~glwefP-~~~~~~~~~---------~~~~~~~~~~~~~~~~~~--------~   62 (118)
T cd03431           2 RRGIAVVVIRNDGRVLLEKRPEK-GLLAGLWEFP-SVEWEEEAD---------GEEALLSALKKALRLSLE--------P   62 (118)
T ss_pred             eEEEEEEEEecCCeEEEEECCCC-CCCCcceeCC-CccccCCcC---------HHHHHHHHHHHHhCcccc--------c
Confidence            34444555555789999999764 4699999998 577777777         678888999998875111        1


Q ss_pred             eeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHH
Q 029829           86 LGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~  137 (187)
                      ++.+....+.  .   +-..++|.+......    .+..+..|++++++.++
T Consensus        63 ~~~~~H~fth--~---~~~~~~~~~~~~~~~----~~~~~~~W~~~eel~~~  105 (118)
T cd03431          63 LGTVKHTFTH--F---RLTLHVYLARLEGDL----LAPDEGRWVPLEELDEY  105 (118)
T ss_pred             ceeEEEecCC--e---EEEEEEEEEEEeCCC----cCccccEEccHHHHhhC
Confidence            3333333221  0   112355555443211    24567899999998864

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]

Probab=98.94  E-value=1.5e-08  Score=77.29  Aligned_cols=124  Identities=19%  Similarity=0.215  Sum_probs=75.5

Q ss_pred             eEEEEEEEeCCC---eEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCe
Q 029829            7 NIFSILGFVSYS---VMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF   83 (187)
Q Consensus         7 ~av~v~i~~~~g---~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l   83 (187)
                      .+++|+.+..++   +|||..-|.    .|-.|-+| +|+++++|+         ..+||.||+.||.|+.-...+.   
T Consensus        10 ~vagCi~~r~~~~~ieVLlvsSs~----~~~~wi~P-KGGwE~dE~---------~~eAA~REt~EEAGv~G~l~~~---   72 (145)
T KOG2839|consen   10 LVAGCICYRSDKEKIEVLLVSSSK----KPHRWIVP-KGGWEPDES---------VEEAALRETWEEAGVKGKLGRL---   72 (145)
T ss_pred             EEEEeeeeeecCcceEEEEEecCC----CCCCccCC-CCCCCCCCC---------HHHHHHHHHHHHhCceeeeecc---
Confidence            455566665544   688876443    23446554 589999999         7999999999999998875432   


Q ss_pred             eeeeEEE-EEccCCCCcceeEEEEEEEEec--CCcCCCC-ccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHH
Q 029829           84 TPLGRIL-YKAPSDGKWGEHELDYLLFIVR--DVSVNPN-PDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVD  159 (187)
Q Consensus        84 ~~~~~~~-y~~~~~~~~~e~e~~~vf~~~~--~~~~~~~-~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~  159 (187)
                        ++.+. +........   .-.++|....  ....-++ ..|..+.+|++++|....+.           -.|+...+.
T Consensus        73 --~~g~~~~~~~~~~~~---~k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~~~-----------~~~m~~al~  136 (145)
T KOG2839|consen   73 --LGGFEDFLSKKHRTK---PKGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIELCQ-----------HKWMKAALE  136 (145)
T ss_pred             --ccchhhccChhhccc---ccceeehhhhhhhcccChhhhcccceeEEeeHHHHHHHHh-----------hHHHHHHHH
Confidence              34433 222211111   1113443332  2222222 35699999999999998755           245666666


Q ss_pred             HHHH
Q 029829          160 NFLF  163 (187)
Q Consensus       160 ~~l~  163 (187)
                      .|+.
T Consensus       137 e~~~  140 (145)
T KOG2839|consen  137 EFLQ  140 (145)
T ss_pred             HHHH
Confidence            5644

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]

Probab=98.52  E-value=5.4e-08  Score=82.34  Aligned_cols=116  Identities=14%  Similarity=0.097  Sum_probs=79.6

Q ss_pred             eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829            7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL   86 (187)
Q Consensus         7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~   86 (187)
                      .+++.+++|.+++||+.+=.......+|.|-+|. |.+.++|+         +..+|+||++||||++.....+.     
T Consensus       116 vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~pt-G~v~~~e~---------i~~gavrEvkeetgid~ef~eVl-----  180 (295)
T KOG0648|consen  116 VGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPT-GRVEEGED---------IWHGAVREVKEETGIDTEFVEVL-----  180 (295)
T ss_pred             eeeeeeEecCCceeEEEEecccceeecccccccc-eEeccccc---------chhhhhhhhHHHhCcchhhhhHH-----
Confidence            3788899998889999764445556789999985 69999998         89999999999999977654431     


Q ss_pred             eEEEEEccCCCCcceeEEEEEEEEe--c-CCcCCCCccccceEEEecHHHHHHHHHh
Q 029829           87 GRILYKAPSDGKWGEHELDYLLFIV--R-DVSVNPNPDEVAEYKYVNREQLKELLRK  140 (187)
Q Consensus        87 ~~~~y~~~~~~~~~e~e~~~vf~~~--~-~~~~~~~~~Ev~~~~Wv~~~el~~~l~~  140 (187)
                         .+....+..+..-..+.+|.|.  + ...+..+..|+..+.|+++++.......
T Consensus       181 ---a~r~~H~~~~~~~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~qp~~  234 (295)
T KOG0648|consen  181 ---AFRRAHNATFGLIKSDMFFTCELRPRSLDITKCKREIEAAAWMPIEEYVSQPLV  234 (295)
T ss_pred             ---HHHhhhcchhhcccccceeEEEeeccccccchhHHHHHHHhcccHHHhhccccc
Confidence               1222211111100122222232  2 4456777889999999999987766553

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]

Probab=98.52  E-value=2.8e-06  Score=68.10  Aligned_cols=112  Identities=17%  Similarity=0.060  Sum_probs=70.3

Q ss_pred             EEEEEE-EeCCC--eEEEEE--ecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCC
Q 029829            8 IFSILG-FVSYS--VMSGQQ--RSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE   82 (187)
Q Consensus         8 av~v~i-~~~~g--~vLL~r--Rs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~   82 (187)
                      +|+|+. +..+|  .++|++  |.+..   .-+.++| +|-++.||+         ++.||+|||+||||+.-....   
T Consensus        75 gVaIl~il~~dG~~~ivL~kQfRpP~G---k~ciElP-AGLiD~ge~---------~~~aAiREl~EEtGy~gkv~~---  138 (225)
T KOG3041|consen   75 GVAILAILESDGKPYIVLVKQFRPPTG---KICIELP-AGLIDDGED---------FEGAAIRELEEETGYKGKVDM---  138 (225)
T ss_pred             eEEEEEEEecCCcEEEEEEEeecCCCC---cEEEEcc-cccccCCCc---------hHHHHHHHHHHHhCccceeee---
Confidence            455553 44566  466765  54321   2355666 699999998         899999999999999843221   


Q ss_pred             eeeeeEEEEEccCCCCcceeEEE-EEEEEec----C--CcCCCCccccceEEEecHHHHHHHHHhc
Q 029829           83 FTPLGRILYKAPSDGKWGEHELD-YLLFIVR----D--VSVNPNPDEVAEYKYVNREQLKELLRKA  141 (187)
Q Consensus        83 l~~~~~~~y~~~~~~~~~e~e~~-~vf~~~~----~--~~~~~~~~Ev~~~~Wv~~~el~~~l~~~  141 (187)
                         ....-|..|   +......| -++.+.-    +  +...+++.|..+++-+++.++.+.+.+-
T Consensus       139 ---~s~~~f~DP---Gltn~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~~~~l  198 (225)
T KOG3041|consen  139 ---VSPTVFLDP---GLTNCNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWRELADL  198 (225)
T ss_pred             ---ccccEEcCC---CCCCCceEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHHHHHhh
Confidence               122235554   22212233 2222321    1  2245778899999999999999888764

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=98.24  E-value=8.6e-06  Score=61.13  Aligned_cols=112  Identities=14%  Similarity=0.092  Sum_probs=70.9

Q ss_pred             CceEEEEEEEeC-CC--eEEEEEecCCCCCC----CCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 029829            5 VPNIFSILGFVS-YS--VMSGQQRSGTKVTF----PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED   77 (187)
Q Consensus         5 ~h~av~v~i~~~-~g--~vLL~rRs~~k~~~----pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~   77 (187)
                      ..++++++++.. .|  .|||.+  ++.+-|    -|-|++| .|-...||+         +..||+||..||+||.++-
T Consensus         2 pK~SAGvLlYR~~aG~v~VLLvH--PGGPFWa~kD~GAWSIP-KGey~~gEd---------p~~AArREf~EE~Gi~vdG   69 (161)
T COG4119           2 PKLSAGVLLYRARAGVVDVLLVH--PGGPFWAGKDDGAWSIP-KGEYTGGED---------PWLAARREFSEEIGICVDG   69 (161)
T ss_pred             CcccceeEEEEecCCCEEEEEec--CCCCccccCCCCccccc-ccccCCCcC---------HHHHHHHHhhhhhceeecC
Confidence            356788888874 45  455553  332223    5889998 588888888         7999999999999999964


Q ss_pred             CCCCCeeeeeEEEEEccCCCCcceeEEEEEEEE----------------ec---CCcCCCCccccceEEEecHHHHHHHH
Q 029829           78 VPVDEFTPLGRILYKAPSDGKWGEHELDYLLFI----------------VR---DVSVNPNPDEVAEYKYVNREQLKELL  138 (187)
Q Consensus        78 ~~~~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~----------------~~---~~~~~~~~~Ev~~~~Wv~~~el~~~l  138 (187)
                      ..    ..+|.  |.++.+.      ++.+|.+                ..   .+.. ..--||..+-|+++++....+
T Consensus        70 P~----~~lG~--~kQ~GGK------vVta~~veae~Dva~~rSntFe~eWPprSG~M-~~FPEVDRagWF~l~eAr~Ki  136 (161)
T COG4119          70 PR----IDLGS--LKQSGGK------VVTAFGVEAELDVADARSNTFELEWPPRSGKM-RKFPEVDRAGWFPLAEARTKI  136 (161)
T ss_pred             ch----hhhhh--hccCCCc------EEEEEeeeeeeehhhhhcceeeeecCCCCCcc-ccCcccccccceecHHHHhHH
Confidence            32    23443  3433221      1122221                11   0111 112489999999999999877


Q ss_pred             Hhc
Q 029829          139 RKA  141 (187)
Q Consensus       139 ~~~  141 (187)
                      .++
T Consensus       137 l~g  139 (161)
T COG4119         137 LKG  139 (161)
T ss_pred             hhc
Confidence            764

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=98.19  E-value=3e-05  Score=60.49  Aligned_cols=136  Identities=14%  Similarity=0.186  Sum_probs=85.0

Q ss_pred             eEEEEEEEeCCCeEEEEEecCCC--CCCCCceeeccccCCCCCCChhhhhhhhc-HHHHHHHHHHHHhCCCccCCCCCCe
Q 029829            7 NIFSILGFVSYSVMSGQQRSGTK--VTFPLVWTNTCCSHPLYRESELIEENALG-VRNAAQRKLLDELGICAEDVPVDEF   83 (187)
Q Consensus         7 ~av~v~i~~~~g~vLL~rRs~~k--~~~pG~W~~~~gGhve~gEs~~~~~~~~~-~~~Aa~REl~EE~Gl~~~~~~~~~l   83 (187)
                      .+-.|+|.|.+ +||+-+|-.+.  .-.-|.+++-+|||+..++..   .+.+. +.-.+.||+.||+++.-+..+  .+
T Consensus        62 ~IpYvvi~~ed-evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA---~s~~evLk~n~~REleEEv~vseqd~q--~~  135 (203)
T COG4112          62 VIPYVVIMDED-EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGA---TSREEVLKGNLERELEEEVDVSEQDLQ--EL  135 (203)
T ss_pred             cccEEEEecCC-EEEEEEeccCcchhhhccccccccccccccCCCc---ccHHHHHccchHHHHHHHhCcCHHHhh--hh
Confidence            34456676655 99999986432  235688899899999988752   11211 223378999999999876533  45


Q ss_pred             eeeeEEEEEccCCCCcceeEEEEEEEEecC-CcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHH
Q 029829           84 TPLGRILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN  160 (187)
Q Consensus        84 ~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~-~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~  160 (187)
                      .++|-+   ....+..+.-.+-.+|..+.. .++..-..+.-+++|+.++++.++-         ..+--|.+.+++.
T Consensus       136 e~lGlI---Ndd~neVgkVHiG~lf~~~~k~ndvevKEkd~~~~kwik~~ele~~y---------~~~EtWS~~~~~~  201 (203)
T COG4112         136 EFLGLI---NDDTNEVGKVHIGALFLGRGKFNDVEVKEKDLFEWKWIKLEELEKFY---------GVMETWSKISAAV  201 (203)
T ss_pred             eeeeee---cCCCcccceEEEEEEEEeeccccceeeeecceeeeeeeeHHHHHHHh---------hhhHHHHHHHHHH
Confidence            667643   222223331123345555432 2233344677899999999999842         2677788876653

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=98.06  E-value=1.2e-05  Score=58.70  Aligned_cols=102  Identities=17%  Similarity=0.148  Sum_probs=53.7

Q ss_pred             EEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeEEE
Q 029829           11 ILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRIL   90 (187)
Q Consensus        11 v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~~~   90 (187)
                      +++++.+|++||+||..+. .|.|+|++|.-- .+ ++.         ..+++.+.+.+..|+.+....     .++.+.
T Consensus         2 ~~i~~~~~~~Ll~kRp~~g-ll~GLwefP~~e-~~-~~~---------~~~~l~~~~~~~~~~~~~~~~-----~~~~v~   64 (114)
T PF14815_consen    2 LLIIRSQGRVLLEKRPEKG-LLAGLWEFPLIE-SD-EED---------DEEELEEWLEEQLGLSIRSVE-----PLGTVK   64 (114)
T ss_dssp             EEEEETTSEEEEEE--SSS-TTTT-EE--EEE--S-SS----------CHHHHHHHTCCSSS-EEEE-S------SEEEE
T ss_pred             EEEEEeCCEEEEEECCCCC-hhhcCcccCEeC-cc-CCC---------CHHHHHHHHHHHcCCChhhhe-----ecCcEE
Confidence            5778889999999998654 699999999521 12 222         145555666677887665432     345544


Q ss_pred             EEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHH
Q 029829           91 YKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        91 y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~  137 (187)
                      .....   .  +-..++|.+........   +-.+.+|++++++.++
T Consensus        65 H~fSH---~--~~~~~~~~~~~~~~~~~---~~~~~~W~~~~~l~~~  103 (114)
T PF14815_consen   65 HVFSH---R--RWTIHVYEVEVSADPPA---EPEEGQWVSLEELDQY  103 (114)
T ss_dssp             EE-SS---E--EEEEEEEEEEEE-SS-------TTEEEEEGGGGGGS
T ss_pred             EEccc---e--EEEEEEEEEEecCCCCC---CCCCcEEEEHHHHhhC
Confidence            43321   0  11335555554322111   5688999999998753

>PF14443 DBC1: DBC1

Probab=96.20  E-value=0.038  Score=41.54  Aligned_cols=82  Identities=16%  Similarity=0.197  Sum_probs=49.7

Q ss_pred             eEEEEEecCCCCCCCCceeecc-ccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeEEEEEccCCC
Q 029829           19 VMSGQQRSGTKVTFPLVWTNTC-CSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDG   97 (187)
Q Consensus        19 ~vLL~rRs~~k~~~pG~W~~~~-gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~~~y~~~~~~   97 (187)
                      ++|+.+|...----+|-|+.+. ||.+..+.+.        +..+|+|=+++-|||++....-  ...+-.++|..+..+
T Consensus         9 kFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~--------LI~TAiR~~K~~tgiDLS~Ct~--W~rf~Ei~Y~R~~~~   78 (126)
T PF14443_consen    9 KFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSV--------LIRTAIRTCKALTGIDLSNCTQ--WYRFAEIHYYRPGSD   78 (126)
T ss_pred             eeEEeecCceEEecCCcCCcccCCCCCCCCcHH--------HHHHHHHHHHHHhccchhhcCc--cceeeEEEEecCCCC
Confidence            4566665542223379998774 4555554443        8999999999999999976432  223335677766544


Q ss_pred             CcceeEEEEEEEE
Q 029829           98 KWGEHELDYLLFI  110 (187)
Q Consensus        98 ~~~e~e~~~vf~~  110 (187)
                      +...+.-+.|+++
T Consensus        79 ~~~~~~EivVlFl   91 (126)
T PF14443_consen   79 GFPSHQEIVVLFL   91 (126)
T ss_pred             CCCceeEEEEEEe
Confidence            4443333334444

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]

Probab=95.81  E-value=0.023  Score=46.66  Aligned_cols=39  Identities=15%  Similarity=0.080  Sum_probs=31.6

Q ss_pred             eEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhC
Q 029829           19 VMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELG   72 (187)
Q Consensus        19 ~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~G   72 (187)
                      +++..||+.     -|.|.+| ||.+++||.         +-.+.+||+.||.=
T Consensus       140 e~vavkr~d-----~~~WAiP-GGmvdpGE~---------vs~tLkRef~eEa~  178 (275)
T KOG4195|consen  140 EFVAVKRPD-----NGEWAIP-GGMVDPGEK---------VSATLKREFGEEAM  178 (275)
T ss_pred             EEEEEecCC-----CCcccCC-CCcCCchhh---------hhHHHHHHHHHHHH
Confidence            455677764     4788887 699999998         88999999999963

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=95.44  E-value=0.084  Score=42.39  Aligned_cols=118  Identities=14%  Similarity=-0.062  Sum_probs=63.1

Q ss_pred             CCCCceEEEEEEEeCCC--eEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCC
Q 029829            2 HKCVPNIFSILGFVSYS--VMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVP   79 (187)
Q Consensus         2 ~g~~h~av~v~i~~~~g--~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~   79 (187)
                      +|+++.+-+|+++...+  .|||.|...+.      +.+| ||.+.+||+         -.+...|.|.+-+|..-....
T Consensus        40 ~GmRrsVe~Vllvh~h~~PHvLLLq~~~~~------fkLP-Gg~l~~gE~---------e~~gLkrkL~~~l~~~~~~~~  103 (188)
T PF13869_consen   40 EGMRRSVEGVLLVHEHGHPHVLLLQIGNTF------FKLP-GGRLRPGED---------EIEGLKRKLTEKLSPEDGVDP  103 (188)
T ss_dssp             HSSEEEEEEEEEEEETTEEEEEEEEETTTE------EE-S-EEE--TT-----------HHHHHHHHHHHHHB-SSSS--
T ss_pred             hCCceEEEEEEEEecCCCcEEEEEeccCcc------ccCC-ccEeCCCCC---------hhHHHHHHHHHHcCCCcCCCC
Confidence            58888888888988877  57777766543      3333 489999999         589999999999998753221


Q ss_pred             CCCe-eeeeEEEEEccC---------CCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHH
Q 029829           80 VDEF-TPLGRILYKAPS---------DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKE  136 (187)
Q Consensus        80 ~~~l-~~~~~~~y~~~~---------~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~  136 (187)
                      ...+ .++|.+ |+...         ...+.-.|...+|++.......+.-..-....-+++=|+.+
T Consensus       104 ~w~vge~l~~W-wRp~Fe~~~YPYlP~HitkPKE~~klylV~Lpe~~~F~VPkn~kL~AvPLFeLyd  169 (188)
T PF13869_consen  104 DWEVGECLGTW-WRPNFEPFMYPYLPPHITKPKECIKLYLVQLPEKCLFAVPKNMKLVAVPLFELYD  169 (188)
T ss_dssp             --EEEEEEEEE-EESSSSS--BSS--TT-SS-SEEEEEEEEE--SSEEEEEETTSEEEEEEHHHHTT
T ss_pred             CcEecCEEEEE-eCCCCCCCCCCCCCcccCChhheeEEEEEecCCCceEecCCCCeEEeecHhhhhc
Confidence            1111 344443 33221         11222245667777765322111111224556677777664

...

>PRK10880 adenine DNA glycosylase; Provisional

Probab=95.37  E-value=0.23  Score=43.60  Aligned_cols=33  Identities=9%  Similarity=-0.118  Sum_probs=25.0

Q ss_pred             ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeec
Q 029829            6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNT   39 (187)
Q Consensus         6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~   39 (187)
                      .+...++++..+|++||+||.... .|.|+|++|
T Consensus       230 ~~~~~~~~~~~~~~~~l~~r~~~g-l~~gl~~fP  262 (350)
T PRK10880        230 ERTGYFLLLQHGDEVWLEQRPPSG-LWGGLFCFP  262 (350)
T ss_pred             eEEEEEEEEEECCEEEEEECCccC-hhhccccCC
Confidence            345555555667899999998654 689999998

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=89.36  E-value=4.6  Score=34.94  Aligned_cols=124  Identities=14%  Similarity=0.070  Sum_probs=68.4

Q ss_pred             CCceEEEEEEEeCCC--eEEEEE-ecC---CC--CCCCCceee------------------ccccCCCCCCChhhhhhhh
Q 029829            4 CVPNIFSILGFVSYS--VMSGQQ-RSG---TK--VTFPLVWTN------------------TCCSHPLYRESELIEENAL   57 (187)
Q Consensus         4 ~~h~av~v~i~~~~g--~vLL~r-Rs~---~k--~~~pG~W~~------------------~~gGhve~gEs~~~~~~~~   57 (187)
                      .-|-+|.|+++|.--  -||+|| |+.   ++  ..++|.-..                  .|.|.|+..=         
T Consensus       227 k~hdSvt~iL~n~srk~LVlvqqfRpaVy~G~~~~~~~g~~~~vDe~~~~e~~PaigvTlELcag~Vd~p~---------  297 (405)
T KOG4432|consen  227 KCHDSVTCILVNMSRKELVLVQQFRPAVYVGKNRFLKEGIGKPVDEIDFSESDPAIGVTLELCAGRVDDPF---------  297 (405)
T ss_pred             hCCCceEEEEEeccchheehhhhcCcceeecceeecccCCCCcccccccccCCccceeeeeeecccCCCCc---------
Confidence            358899999999533  366655 542   11  112332110                  1234444432         


Q ss_pred             cHHHHHHHHHHHHhCCCccCCCCCCeeeeeEEEEEccCCCCcceeEEEEEEEEe-c--C--CcCCCCccccceEEEecHH
Q 029829           58 GVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIV-R--D--VSVNPNPDEVAEYKYVNRE  132 (187)
Q Consensus        58 ~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~-~--~--~~~~~~~~Ev~~~~Wv~~~  132 (187)
                      +..+-|.||..||.|.++..-++   ....  .|....+ ..+.....|...+. .  .  +.-..+.+|..++.-++++
T Consensus       298 s~~e~a~~e~veecGYdlp~~~~---k~va--~y~sGVG-~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEvv~lsle  371 (405)
T KOG4432|consen  298 SDPEKAARESVEECGYDLPEDSF---KLVA--KYISGVG-QSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEVVRLSLE  371 (405)
T ss_pred             ccHHHHHHHHHHHhCCCCCHHHH---hhhh--eeecccC-CcCCeeEEEEEEeehhhccCCCCCcccccceeeEEEechh
Confidence            26788999999999998864322   2221  2332221 11222222222221 1  1  1223456789999999999


Q ss_pred             HHHHHHHhcc
Q 029829          133 QLKELLRKAD  142 (187)
Q Consensus       133 el~~~l~~~~  142 (187)
                      ++.++...++
T Consensus       372 ~a~~~~~q~~  381 (405)
T KOG4432|consen  372 DAPSLYRQHN  381 (405)
T ss_pred             hhhHHHhccC
Confidence            9999998863

>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]

Probab=86.99  E-value=1.7  Score=34.48  Aligned_cols=57  Identities=16%  Similarity=0.039  Sum_probs=40.8

Q ss_pred             CCCCceEEEEEEEeCCC--eEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCC
Q 029829            2 HKCVPNIFSILGFVSYS--VMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGIC   74 (187)
Q Consensus         2 ~g~~h~av~v~i~~~~g--~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~   74 (187)
                      .|++..+-+|+|+....  .|||.|-..+-.-.||       |.+.+||+         -.+...|-+.|-+|-.
T Consensus        66 ~gmRrsvegvlivheH~lPHvLLLQig~tf~KLPG-------G~L~pGE~---------e~~Gl~r~l~~~Lgr~  124 (221)
T KOG1689|consen   66 EGMRRSVEGVLIVHEHNLPHVLLLQIGNTFFKLPG-------GRLRPGED---------EADGLKRLLTESLGRS  124 (221)
T ss_pred             hhhhheeeeeEEEeecCCCeEEEEeeCCEEEecCC-------CccCCCcc---------hhHHHHHHHHHHhccc
Confidence            46777788888887653  6666554333223454       99999998         4788999999999933

>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

Probab=83.41  E-value=6.3  Score=33.14  Aligned_cols=106  Identities=20%  Similarity=0.195  Sum_probs=57.6

Q ss_pred             EEEEEecCCCCCCCCceeeccccCC-CCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeEEEEEccCCCC
Q 029829           20 MSGQQRSGTKVTFPLVWTNTCCSHP-LYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGK   98 (187)
Q Consensus        20 vLL~rRs~~k~~~pG~W~~~~gGhv-e~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~~~y~~~~~~~   98 (187)
                      +||.+|.-++   -+.|-+|- +.. +.+++         +..+|.|.|..-.|=.....-+ .-.++|...+..+-...
T Consensus       141 yLLV~~k~g~---~s~w~fP~-~~~s~~~~~---------lr~~ae~~Lk~~~ge~~~t~fv-gnaP~g~~~~q~pr~~~  206 (263)
T KOG4548|consen  141 YLLVKRKFGK---SSVWIFPN-RQFSSSEKT---------LRGHAERDLKVLSGENKSTWFV-GNAPFGHTPLQSPREMT  206 (263)
T ss_pred             EEEEeeccCc---cceeeCCC-cccCCccch---------HHHHHHHHHHHHhcchhhhhee-ccCccccccccCccccc
Confidence            6667665333   24566654 444 67777         8999999999988866543211 11345543344332211


Q ss_pred             cceeEEEEEEEEec---CCcCCCCccccceEEEecHHHHHHHHHh
Q 029829           99 WGEHELDYLLFIVR---DVSVNPNPDEVAEYKYVNREQLKELLRK  140 (187)
Q Consensus        99 ~~e~e~~~vf~~~~---~~~~~~~~~Ev~~~~Wv~~~el~~~l~~  140 (187)
                      .-...-..+|+...   .... ..-.-..++.||+.+++.+.+..
T Consensus       207 ~e~~~~sk~ff~k~~lv~~~~-~kn~n~edfvWvTkdel~e~l~~  250 (263)
T KOG4548|consen  207 TEEPVSSKVFFFKASLVANSN-QKNQNKEDFVWVTKDELGEKLPK  250 (263)
T ss_pred             ccccccceeEEeeeeeccccc-hhcccccceEEechHHHhhhcch
Confidence            11111123444432   1111 11234567999999999987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	187
2icj_A	233	The Crystal Structure Of Human Isopentenyl Diphopha		1e-44
2dho_A	235	Crystal Structure Of Human Ipp Isomerase I In Space		2e-44
2i6k_A	235	Crystal Structure Of Human Type I Ipp Isomerase Com		6e-44
2pny_A	246	Structure Of Human Isopentenyl-Diphosphate Delta-Is		7e-34
1x84_A	189	Ipp Isomerase (Wt) Reacted With (S)-Bromohydrine Of		2e-04
1nfs_A	183	Structure And Mechanism Of Action Of Isopentenylpyr		2e-04
1hzt_A	190	Crystal Structure Of Metal-Free Isopentenyl Diphosp		3e-04
1x83_A	189	Y104f Ipp Isomerase Reacted With (S)-Bromohydrine O		7e-04
2g73_A	183	Y104f Mutant Type 1 Ipp Isomerase Complex With Eipp		7e-04
1i9a_A	182	Structural Studies Of Cholesterol Biosynthesis: Mev		7e-04
1r67_A	190	Y104a Mutant Of E.coli Ipp Isomerase Length = 190		9e-04

>pdb|2ICJ|A Chain A, The Crystal Structure Of Human Isopentenyl Diphophate Isomerase Length = 233

Iteration: 1
 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/178 (51%), Positives = 131/178 (73%), Gaps = 4/178 (2%)
Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS+  F + + +  QQRS  K+TFP  +TNTCCSHPL   +EL E +ALGVR AAQR+L 
Sbjct: 60  FSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLK 119
Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
            ELGI  E+VP +E   L RI YKA SDG WGEHE+DY+L + ++V++NP+P+E+  Y Y
Sbjct: 120 AELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRKNVTLNPDPNEIKSYCY 179
Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 186
           V++E+LKELL+KA +GE  +K++PWF+++   FLFKWWD+L    LN+ +D + I+++
Sbjct: 180 VSKEELKELLKKAASGE--IKITPWFKIIAATFLFKWWDNLNH--LNQFVDHEKIYRM 233

>pdb|2DHO|A Chain A, Crystal Structure Of Human Ipp Isomerase I In Space Group P212121 Length = 235

Iteration: 1
 Score =  174 bits (441), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 92/178 (51%), Positives = 130/178 (73%), Gaps = 4/178 (2%)
Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS+  F + + +  QQRS  K+TFP  +TNTCCSHPL   +EL E +ALGVR AAQR+L 
Sbjct: 62  FSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLK 121
Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
            ELGI  E+VP +E   L RI YKA SDG WGEHE+DY+L +  +V++NP+P+E+  Y Y
Sbjct: 122 AELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRMNVTLNPDPNEIKSYCY 181
Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 186
           V++E+LKELL+KA +GE  +K++PWF+++   FLFKWWD+L    LN+ +D + I+++
Sbjct: 182 VSKEELKELLKKAASGE--IKITPWFKIIAATFLFKWWDNLNH--LNQFVDHEKIYRM 235

>pdb|2I6K|A Chain A, Crystal Structure Of Human Type I Ipp Isomerase Complexed With A Substrate Analog Length = 235

Iteration: 1
 Score =  173 bits (438), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 92/177 (51%), Positives = 129/177 (72%), Gaps = 4/177 (2%)
Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS+  F + + +  QQRS  K+TFP  +TNTCCSHPL   +EL E +ALGVR AAQR+L 
Sbjct: 62  FSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLK 121
Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
            ELGI  E+VP +E   L RI YKA SDG WGEHE+DY+L +  +V++NP+P+E+  Y Y
Sbjct: 122 AELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRXNVTLNPDPNEIKSYCY 181
Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHK 185
           V++E+LKELL+KA +GE  +K++PWF+++   FLFKWWD+L    LN+ +D + I++
Sbjct: 182 VSKEELKELLKKAASGE--IKITPWFKIIAATFLFKWWDNL--NHLNQFVDHEKIYR 234

>pdb|2PNY|A Chain A, Structure Of Human Isopentenyl-Diphosphate Delta-Isomerase 2 Length = 246

Iteration: 1
 Score =  139 bits (351), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 75/178 (42%), Positives = 118/178 (66%), Gaps = 4/178 (2%)
Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS++ F + + +  QQRS TKVTFP  +T++C SHPLY  +EL E++A+GVR AAQR+L 
Sbjct: 73  FSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQ 132
Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
            ELGI  E +  ++   +    +KA SD  WGEHE+ YLL + ++V++NP+P E     Y
Sbjct: 133 AELGIPGEQISPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKNVTLNPDPSETKSILY 192
Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 186
           +++E+L ELL +   GE  +K++PW R + + FL++WW HL+  T    +++  IH++
Sbjct: 193 LSQEELWELLEREARGE--VKVTPWLRTIAERFLYRWWPHLDDVT--PFVELHKIHRV 246

>pdb|1X84|A Chain A, Ipp Isomerase (Wt) Reacted With (S)-Bromohydrine Of Ipp Length = 189

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 18/152 (11%)
Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS   F +   +   +R+ +K  +P VWTN+ C HP   ES           +A  R+  
Sbjct: 35  FSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESN---------EDAVIRRCR 85
Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
            ELG+  E  P +   P  R  Y+A       E+E+  +       ++  N DEV +Y++
Sbjct: 86  YELGV--EITPPESIYPDFR--YRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQW 141
Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDN 160
            +   L ++L   DA       SPW  +   N
Sbjct: 142 CD---LADVLHGIDATP--WAFSPWMVMQATN 168

>pdb|1NFS|A Chain A, Structure And Mechanism Of Action Of Isopentenylpyrophosphate-dimethylallylpyrophosphate Isomerase: Complex With Nipp Length = 183

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 18/152 (11%)
Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS   F +   +   +R+ +K  +P VWTN+ C HP   ES           +A  R+  
Sbjct: 35  FSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESN---------EDAVIRRCR 85
Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
            ELG+  E  P +   P  R  Y+A       E+E+  +       ++  N DEV +Y++
Sbjct: 86  YELGV--EITPPESIYPDFR--YRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQW 141
Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDN 160
            +   L ++L   DA       SPW  +   N
Sbjct: 142 CD---LADVLHGIDATP--WAFSPWMVMQATN 168

>pdb|1HZT|A Chain A, Crystal Structure Of Metal-Free Isopentenyl Diphosphate:dimethylallyl Diphosphate Isomerase Length = 190

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 18/152 (11%)
Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS   F +   +   +R+ +K  +P VWTN+ C HP   ES           +A  R+  
Sbjct: 35  FSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESN---------EDAVIRRCR 85
Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
            ELG+  E  P +   P  R  Y+A       E+E+  +       ++  N DEV +Y++
Sbjct: 86  YELGV--EITPPESIYPDFR--YRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQW 141
Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDN 160
            +   L ++L   DA       SPW  +   N
Sbjct: 142 CD---LADVLHGIDATP--WAFSPWMVMQATN 168

>pdb|1X83|A Chain A, Y104f Ipp Isomerase Reacted With (S)-Bromohydrine Of Ipp Length = 189

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 18/137 (13%)
Query: 24  QRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 83
           +R+ +K  +P VWTN+ C HP   ES           +A  R+   ELG+  E  P +  
Sbjct: 50  RRALSKKAWPGVWTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESI 98
Query: 84  TPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADA 143
            P  R     PS     E+E+  +       ++  N DEV +Y++ +   L ++L   DA
Sbjct: 99  YPDFRFRATDPSGIV--ENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDA 153
Query: 144 GEEGLKLSPWFRLVVDN 160
                  SPW  +   N
Sbjct: 154 TP--WAFSPWMVMQATN 168

>pdb|2G73|A Chain A, Y104f Mutant Type 1 Ipp Isomerase Complex With Eipp Length = 183

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 18/137 (13%)
Query: 24  QRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 83
           +R+ +K  +P VWTN+ C HP   ES           +A  R+   ELG+  E  P +  
Sbjct: 50  RRALSKKAWPGVWTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESI 98
Query: 84  TPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADA 143
            P  R     PS     E+E+  +       ++  N DEV +Y++ +   L ++L   DA
Sbjct: 99  YPDFRFRATDPSGIV--ENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDA 153
Query: 144 GEEGLKLSPWFRLVVDN 160
                  SPW  +   N
Sbjct: 154 TP--WAFSPWMVMQATN 168

>pdb|1I9A|A Chain A, Structural Studies Of Cholesterol Biosynthesis: Mevalonate 5-Diphosphate Decarboxylase And Isopentenyl Diphosphate Isomerase Length = 182

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 18/145 (12%)
Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS   F +   +   +R+ +K  +P VWTN+ C HP   ES           +A  R+  
Sbjct: 35  FSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESN---------EDAVIRRCR 85
Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
            ELG+  E  P +   P  R  Y+A       E+E+  +       ++  N DEV +Y++
Sbjct: 86  YELGV--EITPPESIYPDFR--YRATDPSGIVENEVCPVFAARTTSALQINDDEVXDYQW 141
Query: 129 VNREQLKELLRKADAGEEGLKLSPW 153
            +   L ++L   DA       SPW
Sbjct: 142 CD---LADVLHGIDATP--WAFSPW 161

>pdb|1R67|A Chain A, Y104a Mutant Of E.coli Ipp Isomerase Length = 190

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 18/152 (11%)
Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS   F +   +   +R+ +K  +P VWTN+ C HP   ES           +A  R+  
Sbjct: 35  FSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESN---------EDAVIRRCR 85
Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
            ELG+  E  P +   P  R     PS     E+E+  +       ++  N DEV +Y++
Sbjct: 86  YELGV--EITPPESIYPDFRARATDPSGIV--ENEVCPVFAARTTSALQINDDEVMDYQW 141
Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDN 160
            +   L ++L   DA       SPW  +   N
Sbjct: 142 CD---LADVLHGIDATP--WAFSPWMVMQATN 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	187
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	5e-59
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	3e-56
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	1e-46
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	2e-34
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	2e-29
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	3e-10
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	9e-10
1xsa_A	153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	1e-04

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A* Length = 235

 Score =  183 bits (466), Expect = 5e-59
 Identities = 92/178 (51%), Positives = 129/178 (72%), Gaps = 4/178 (2%)

Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS+  F + + +  QQRS  K+TFP  +TNTCCSHPL   +EL E +ALGVR AAQR+L 
Sbjct: 62  FSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLK 121

Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
            ELGI  E+VP +E   L RI YKA SDG WGEHE+DY+L +  +V++NP+P+E+  Y Y
Sbjct: 122 AELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRMNVTLNPDPNEIKSYCY 181

Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 186
           V++E+LKELL+KA +GE   K++PWF+++   FLFKWWD+L    LN+ +D + I+++
Sbjct: 182 VSKEELKELLKKAASGEI--KITPWFKIIAATFLFKWWDNLN--HLNQFVDHEKIYRM 235

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens} Length = 246

 Score =  176 bits (448), Expect = 3e-56
 Identities = 74/178 (41%), Positives = 117/178 (65%), Gaps = 4/178 (2%)

Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS++ F + + +  QQRS TKVTFP  +T++C SHPLY  +EL E++A+GVR AAQR+L 
Sbjct: 73  FSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQ 132

Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
            ELGI  E +  ++   +    +KA SD  WGEHE+ YLL + ++V++NP+P E     Y
Sbjct: 133 AELGIPGEQISPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKNVTLNPDPSETKSILY 192

Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 186
           +++E+L ELL +   GE   K++PW R + + FL++WW HL+   +   +++  IH++
Sbjct: 193 LSQEELWELLEREARGEV--KVTPWLRTIAERFLYRWWPHLDD--VTPFVELHKIHRV 246

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A* Length = 190

 Score =  150 bits (380), Expect = 1e-46
 Identities = 37/177 (20%), Positives = 66/177 (37%), Gaps = 23/177 (12%)

Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
           FS   F +   +   +R+ +K  +P VWTN+ C HP   ES           +A  R+  
Sbjct: 35  FSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNE---------DAVIRRCR 85

Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
            ELG+  E  P +         Y+A       E+E+  +       ++  N DEV +Y++
Sbjct: 86  YELGV--EITPPESI--YPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQW 141

Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEV-IDMKTIH 184
            +   +   +            SPW  +   N   +    L      ++ ++    H
Sbjct: 142 CDLADVLHGID-----ATPWAFSPWMVMQATN--REARKRLS--AFTQLKLEHHHHH 189

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Length = 171

 Score =  118 bits (298), Expect = 2e-34
 Identities = 21/139 (15%), Positives = 43/139 (30%), Gaps = 22/139 (15%)

Query: 23  QQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 82
            +RS +K  FP     +        E+            A +R+  +EL +  + +    
Sbjct: 51  PRRSPSKSLFPNALDVSVGGAVQSGET---------YEEAFRREAREELNVEIDALSWRP 101

Query: 83  FTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKAD 142
                     +P           Y L    D +   NP++++  +++  E L   +   +
Sbjct: 102 LA------SFSPFQTTLSSFMCVYEL--RSDATPIFNPNDISGGEWLTPEHLLARIAAGE 153

Query: 143 AGEEGLKLSPWFRLVVDNF 161
           A            LV   +
Sbjct: 154 A-----AKGDLAELVRRCY 167

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Length = 180

 Score =  105 bits (265), Expect = 2e-29
 Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 20/142 (14%)

Query: 23  QQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 82
           Q+R+ TK   P +   T        E          +  +A+R+  +ELGI         
Sbjct: 54  QRRTETKDFLPGMLDATAGGVVQADEQ---------LLESARREAEEELGI-----AGVP 99

Query: 83  FTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKAD 142
           F   G+  ++  +           L   V         DEV+E  ++  E++     +  
Sbjct: 100 FAEHGQFYFEDKN-----CRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFT 154

Query: 143 AGEEGLKLSPWFRLVVDNFLFK 164
                  L+ W +    N   +
Sbjct: 155 PDSLKA-LALWMKRNAKNEAVE 175

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165

 Score = 55.3 bits (133), Expect = 3e-10
 Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 11/116 (9%)

Query: 23  QQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 82
            + +  +  FP  W  +          E IEE       A +R++ +ELG       +  
Sbjct: 44  CKMADNRGVFPGQWALSGGGVE---PGERIEE-------ALRREIREELGEQLILSDITP 93

Query: 83  FTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVN-PNPDEVAEYKYVNREQLKEL 137
           +T    I  K  +DG+  E  + YL+F     + +    DE  +Y +V  E+L   
Sbjct: 94  WTFRDDIRIKTYADGRQEEIYMIYLIFDCVSANRDICINDEFQDYAWVKPEELALY 149

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170} Length = 300

 Score = 55.4 bits (133), Expect = 9e-10
 Identities = 24/142 (16%), Positives = 43/142 (30%), Gaps = 18/142 (12%)

Query: 23  QQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 82
            +RS  K   P    N          S         +R    ++  +E  +        +
Sbjct: 138 GRRSPDKSVAPGKLDNMVAGGQPADLS---------LRQNLIKECAEEADLPEAL--ARQ 186

Query: 83  FTPLGRILYKAPSD-GKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKA 141
             P+G I Y   S  G   +    Y L +  D   +    E+A++      ++ E +R  
Sbjct: 187 AIPVGAITYCMESPAGIKPDTLFLYDLALPEDFRPHNTDGEMADFMLWPAAKVVEAVRTT 246

Query: 142 DAGEEGLKLSPWFRLVVDNFLF 163
           +             L V +F  
Sbjct: 247 E------AFKFNVNLTVIDFAI 262

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 6/80 (7%)

Query: 60  RNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPN 119
              A R   +E GI A  +     T +     +     +     + Y L  V+D  V   
Sbjct: 57  LETALRATQEEAGIEAGQL-----TIIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIR 111

Query: 120 P-DEVAEYKYVNREQLKELL 138
              E   Y+++  E+  +L 
Sbjct: 112 LSHEHQAYRWLGLEEACQLA 131

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	187
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	100.0
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	100.0
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.96
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.95
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.91
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.89
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.87
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.87
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.85
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.85
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.83
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.83
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.83
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.83
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.82
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.82
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.82
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.81
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.81
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.81
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.81
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.8
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.8
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.8
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.8
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.8
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.79
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.79
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.79
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.79
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.79
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.78
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.77
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.77
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.77
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.77
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.76
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.76
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.76
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.75
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.75
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.75
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.75
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.75
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.75
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.74
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.73
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.73
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.73
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.72
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.72
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.71
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.71
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.7
3f13_A	163	Putative nudix hydrolase family member; structural	99.7
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.7
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.7
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.7
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.69
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.69
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.69
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.68
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.68
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.68
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.67
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.63
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.63
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.62
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.62
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.6
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.58
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.55
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.31
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.28
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	98.84
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	98.75
3bho_A	208	Cleavage and polyadenylation specificity factor su	98.64

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=100.00  E-value=2.6e-39  Score=267.58  Aligned_cols=175  Identities=39%  Similarity=0.758  Sum_probs=152.4

Q ss_pred             CCCCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCC------CChhhhhhhhcHHHHHHHHHHHHhCCCc
Q 029829            2 HKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYR------ESELIEENALGVRNAAQRKLLDELGICA   75 (187)
Q Consensus         2 ~g~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~g------Es~~~~~~~~~~~~Aa~REl~EE~Gl~~   75 (187)
                      +|++|++|+|+|+|.+|+||||||+..|.+|||+|++|+|||+++|      |++      .|+.+||+||+.|||||.+
T Consensus        66 ~g~~h~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~------~~~~eAA~REl~EElGi~~  139 (246)
T 2pny_A           66 KGLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDA------IGVRRAAQRRLQAELGIPG  139 (246)
T ss_dssp             TTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGG------HHHHHHHHHHHHHHHCCCT
T ss_pred             CCcEEEEEEEEEEeCCCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccc------hhHHHHHHHHHHHHHCCCc
Confidence            5899999999999999999999999999999999999999999999      551      1238999999999999998


Q ss_pred             cCCCCCCeeeeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHH
Q 029829           76 EDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR  155 (187)
Q Consensus        76 ~~~~~~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~  155 (187)
                      ..+.+.++.+++.+.|..+....+.+++++++|++..+.++.++++|+.+++|++++++.+++...+  ..+..|+||++
T Consensus       140 ~~v~~~~l~~l~~~~y~~~~~~~~~~~e~~~vf~~~~~~~~~~~~~Ev~~~~wv~~eel~~~l~~~~--~~~~~ftp~~~  217 (246)
T 2pny_A          140 EQISPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKNVTLNPDPSETKSILYLSQEELWELLEREA--RGEVKVTPWLR  217 (246)
T ss_dssp             TTCCGGGSEEEEEEEEEEESSSSBEEEEEEEEEEEECCCCCCCCTTTEEEEEEECHHHHHHHHHHHH--HTSSCBCHHHH
T ss_pred             cccCccccEEEEEEEEEecCCCceeeeEEEEEEEEEECCCCCCChHHeeEEEEEeHHHHHHHHHhcc--CCCceECHhHH
Confidence            7554445688999888877665667788999999887777788889999999999999999998731  01358999999


Q ss_pred             HHHHHHHHHHHhHhcccccccccCCCceeec
Q 029829          156 LVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL  186 (187)
Q Consensus       156 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  186 (187)
                      .++++||..||+++++  |.++.|+++||++
T Consensus       218 ~i~~~~l~~ww~~~~~--~~~~~~~~~~~~~  246 (246)
T 2pny_A          218 TIAERFLYRWWPHLDD--VTPFVELHKIHRV  246 (246)
T ss_dssp             HHHHHTHHHHGGGTTC--CGGGCCSSCCEEC
T ss_pred             HHHHHHHHHHHHhhhh--hhhccCccceeeC
Confidence            9999999999999998  9999999999986

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=100.00  E-value=7.7e-39  Score=263.05  Aligned_cols=181  Identities=50%  Similarity=0.904  Sum_probs=152.6

Q ss_pred             CCCCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 029829            2 HKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD   81 (187)
Q Consensus         2 ~g~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~   81 (187)
                      +|++|++|+|+|+|.+|+||||||+..|..|||+|++|+|||+++||+...++...|+.+||+||+.|||||.+..+.+.
T Consensus        55 ~g~~h~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~  134 (235)
T 2dho_A           55 KGLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPE  134 (235)
T ss_dssp             TTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGSCGG
T ss_pred             CCceEEEEEEEEEcCCCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCccccChh
Confidence            58999999999999999999999999999999999999999999994310001112258999999999999998754444


Q ss_pred             CeeeeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 029829           82 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF  161 (187)
Q Consensus        82 ~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~  161 (187)
                      ++.+++.+.|..+..+.+.+++++++|++..+..+.++++|+.+++|++++++.+++...+  ..+..|+||++.++++|
T Consensus       135 ~l~~l~~~~y~~~~~~~~~~~e~~~vf~~~~~~~~~~~~~Ev~~~~wv~~~el~~~l~~~~--~~~~~ftp~~~~i~~~~  212 (235)
T 2dho_A          135 EINYLTRIHYKAQSDGIWGEHEIDYILLVRMNVTLNPDPNEIKSYCYVSKEELKELLKKAA--SGEIKITPWFKIIAATF  212 (235)
T ss_dssp             GSEEEEEEEEEEECSSSBEEEEEEEEEEEECCCCCCCCTTTEEEEEEECHHHHHHHHHHHH--TTSSCBCHHHHHHHHHT
T ss_pred             hcEEEEEEEEeccCCCccceeEEEEEEEEEECCCCcCChHHEEEEEEEcHHHHHHHHhhcc--CCCcEECHhHHHHHHHH
Confidence            5678999988877655667788999999887777788889999999999999999998731  01358999999999999


Q ss_pred             HHHHHhHhcccccccccCCCceeec
Q 029829          162 LFKWWDHLEKGTLNEVIDMKTIHKL  186 (187)
Q Consensus       162 l~~~~~~~~~~~~~~~~~~~~~~~~  186 (187)
                      |..||+++++  |.++.++++||++
T Consensus       213 L~~ww~~~~~--~~~~~~~~~~~~~  235 (235)
T 2dho_A          213 LFKWWDNLNH--LNQFVDHEKIYRM  235 (235)
T ss_dssp             HHHHHTTTTC--CGGGCCSSCEEEC
T ss_pred             HHHHHhhcch--hhhccCccceeeC
Confidence            9999999997  9999999999986

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.96  E-value=1.4e-28  Score=208.46  Aligned_cols=146  Identities=16%  Similarity=0.118  Sum_probs=126.1

Q ss_pred             CCCCceEEEEEEEeCCC---eEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 029829            2 HKCVPNIFSILGFVSYS---VMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV   78 (187)
Q Consensus         2 ~g~~h~av~v~i~~~~g---~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~   78 (187)
                      .|++|++|++.+++.+|   ++||||||.+|.+|||+|++++|||+++||+         +.+||+||+.||+||++..+
T Consensus       114 ~G~~~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs---------~~eaA~REl~EElGI~~~~~  184 (300)
T 3dup_A          114 FGVRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLS---------LRQNLIKECAEEADLPEALA  184 (300)
T ss_dssp             GTCCEEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTSC---------HHHHHHHHHHHHHCCCHHHH
T ss_pred             cceEEEEEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCCCCC---------HHHHHHHHHHHHhCCChhhh
Confidence            58999999999999887   9999999999999999999999999999999         89999999999999988654


Q ss_pred             CCCCeeeeeEEEEEccCCCCcceeEEEEEEEEecC--CcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHH
Q 029829           79 PVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD--VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRL  156 (187)
Q Consensus        79 ~~~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~--~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~  156 (187)
                      .  .+.+.+.+.|.+....+ .+++++|+|.+..+  ..+.+|++||++++|++++++.+++.+ +     ..|+||+..
T Consensus       185 ~--~l~~~g~i~y~~~~~~G-~~~E~~~vy~~~l~~~~~p~~~~~EV~~~~~v~~~El~~~l~~-p-----g~F~p~~~l  255 (300)
T 3dup_A          185 R--QAIPVGAITYCMESPAG-IKPDTLFLYDLALPEDFRPHNTDGEMADFMLWPAAKVVEAVRT-T-----EAFKFNVNL  255 (300)
T ss_dssp             T--TCEEEEEEEEEEEETTE-EEEEEEEEEEEECCTTCCCCCTTSSEEEEEEEEHHHHHHHHHH-C-----CCBCTTHHH
T ss_pred             h--hccccceEEEEEecCCC-eEEEEEEEEEEEecCCCcCCCCchHhheEEEECHHHHHHHHhc-C-----CCcCccHHH
Confidence            3  35678888887765444 35788899887753  445778999999999999999999997 1     489999999


Q ss_pred             HHHHHHHHH
Q 029829          157 VVDNFLFKW  165 (187)
Q Consensus       157 ~~~~~l~~~  165 (187)
                      ++-+||.+.
T Consensus       256 V~ldfl~Rh  264 (300)
T 3dup_A          256 TVIDFAIRH  264 (300)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999998765

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.95  E-value=3.7e-27  Score=185.78  Aligned_cols=145  Identities=23%  Similarity=0.311  Sum_probs=117.0

Q ss_pred             CCCCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 029829            2 HKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD   81 (187)
Q Consensus         2 ~g~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~   81 (187)
                      +|++|++|++++++.+|+|||++|+..+..+||.|++|+||++++||+         +.+||+||++||||+.+..+.  
T Consensus        28 ~~~~~~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt---------~~~aa~REl~EEtGl~~~~~~--   96 (190)
T 1hzt_A           28 DTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGES---------NEDAVIRRCRYELGVEITPPE--   96 (190)
T ss_dssp             ---CEECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCC---------HHHHHHHHHHHHHCCCBSCCE--
T ss_pred             CCceEEEEEEEEEcCCCEEEEEEeCCCCCCCCCcccCcccccCCCCCC---------HHHHHHHHHHHHHCCCchhhh--
Confidence            578899999999998999999999988888999999977899999999         899999999999999987530  


Q ss_pred             CeeeeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 029829           82 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF  161 (187)
Q Consensus        82 ~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~  161 (187)
                        .+++.+.|.....++...+.++++|.+..+..+.++++|+.+++|++++++.+++..+     +..++||++.++++|
T Consensus        97 --~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~-----~~~~~p~~~~~~~~~  169 (190)
T 1hzt_A           97 --SIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLHGIDAT-----PWAFSPWMVMQATNR  169 (190)
T ss_dssp             --EEETTCEEEEECTTSCEEEEECCEEEEEBCSCCCCCTTTEEEEEEECHHHHHHHHHHC-----GGGBCHHHHHHHHSH
T ss_pred             --eeeeeEEEEeeCCCCCcceEEEEEEEEecCCCCcCCccceeeEEEecHHHHHHHHHcC-----hhhcCchHHHHHHHH
Confidence              3456565654433333335566788887666666778899999999999999999875     468999999999998


Q ss_pred             HHH
Q 029829          162 LFK  164 (187)
Q Consensus       162 l~~  164 (187)
                      +..
T Consensus       170 ~~~  172 (190)
T 1hzt_A          170 EAR  172 (190)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.91  E-value=1.6e-23  Score=162.89  Aligned_cols=135  Identities=17%  Similarity=0.146  Sum_probs=109.2

Q ss_pred             CCCCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 029829            2 HKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD   81 (187)
Q Consensus         2 ~g~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~   81 (187)
                      .+..|+++++++++.+|+|||++|+..+..+||+|++|+||++++||+         +.+||+||+.||||+.+..+   
T Consensus        33 ~~~~~~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~---------~~~aa~REl~EEtGl~~~~~---  100 (180)
T 2fkb_A           33 QCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQ---------LLESARREAEEELGIAGVPF---  100 (180)
T ss_dssp             HTCCEEEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCC---------HHHHHHHHHHHHHCCBSCCC---
T ss_pred             cCceeeEEEEEEECCCCEEEEEECCCCCccCCCcEEeecCCCCCCCCC---------HHHHHHHHHHHHHCCCccce---
Confidence            478899999999999999999999887777899999977899999999         89999999999999987643   


Q ss_pred             CeeeeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 029829           82 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF  161 (187)
Q Consensus        82 ~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~  161 (187)
                        .+++.+.+....     .+...++|.+.....+.++++|+.+++|++++++.+++.         .++|..+.++..|
T Consensus       101 --~~l~~~~~~~~~-----~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~---------~~~~~~~~~l~~~  164 (180)
T 2fkb_A          101 --AEHGQFYFEDKN-----CRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCD---------EFTPDSLKALALW  164 (180)
T ss_dssp             --EEEEEEEEEETT-----EEEEEEEEEEECCCCCCCCTTTEEEEEEECHHHHHTTGG---------GBCHHHHHHHHHH
T ss_pred             --EEEEEEEecCCC-----ceEEEEEEEEecCCCcCCChhHhheEEEecHHHHHHHHH---------HhCCcHHHHHHHH
Confidence              456666554321     144667787776556667788999999999999997643         3778888888877


Q ss_pred             HHH
Q 029829          162 LFK  164 (187)
Q Consensus       162 l~~  164 (187)
                      +..
T Consensus       165 ~~~  167 (180)
T 2fkb_A          165 MKR  167 (180)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            543

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.89  E-value=5.8e-22  Score=150.25  Aligned_cols=143  Identities=16%  Similarity=0.064  Sum_probs=105.7

Q ss_pred             CCCCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 029829            2 HKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD   81 (187)
Q Consensus         2 ~g~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~   81 (187)
                      ....|.+|++++++.+|+|||+||+..+..++|.|++| ||++++||+         +.+||+||+.||||+.+....  
T Consensus         4 ~~~~~~~v~~vi~~~~~~vLL~~r~~~~~~~~g~w~~P-gG~ve~gE~---------~~~aa~REl~EE~Gl~~~~~~--   71 (153)
T 3grn_A            4 EKPYIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLP-GGKVNPDES---------LKEGVAREVWEETGITMVPGD--   71 (153)
T ss_dssp             SSCEEEEEEEEEECTTCCEEEEEECTTCSSSTTCEECS-EEECCTTCC---------HHHHHHHHHHHHHCCCCCCCS--
T ss_pred             CCceEEEEEEEEEcCCCcEEEEEEcCCCCCCCCeEECc-eeecCCCCC---------HHHHHHhhhhhhhCcEeecce--
Confidence            34568899999999999999999998766799999998 799999999         899999999999999987543  


Q ss_pred             CeeeeeEEEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHH
Q 029829           82 EFTPLGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN  160 (187)
Q Consensus        82 ~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~  160 (187)
                         +++.+.+..+.     .+...++|.+.. +..+.++ +|+.+++|++++++.++          ..+.|+.+.+++.
T Consensus        72 ---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~e~~~~~W~~~~el~~~----------~~~~~~~~~~l~~  132 (153)
T 3grn_A           72 ---IAGQVNFELTE-----KKVIAIVFDGGYVVADVKLS-YEHIEYSWVSLEKILGM----------ETLPAYFRDFFER  132 (153)
T ss_dssp             ---EEEEEEEECSS-----CEEEEEEEEEEECCCCCCCC-TTEEEEEEECHHHHTTC----------SSSCHHHHHHHHH
T ss_pred             ---EEEEEEEecCC-----ceEEEEEEEEEecCCcEecC-CCcceEEEEEHHHhhhc----------ccchHHHHHHHHH
Confidence               46665554432     134556676654 3444443 79999999999999753          1288999999999


Q ss_pred             HHHHHHhHhcccccc
Q 029829          161 FLFKWWDHLEKGTLN  175 (187)
Q Consensus       161 ~l~~~~~~~~~~~~~  175 (187)
                      ++..-..-..++++.
T Consensus       133 l~~~~~~e~~~~~~~  147 (153)
T 3grn_A          133 FDRENKKPSKLFIEG  147 (153)
T ss_dssp             HHHHHTC--------
T ss_pred             HhccccCCCCccccc
Confidence            877766555555543

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.87  E-value=1.2e-20  Score=143.09  Aligned_cols=121  Identities=20%  Similarity=0.181  Sum_probs=94.9

Q ss_pred             CCCCceEEEEEEEeCCCeEEEEEecCC--CCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCC
Q 029829            2 HKCVPNIFSILGFVSYSVMSGQQRSGT--KVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVP   79 (187)
Q Consensus         2 ~g~~h~av~v~i~~~~g~vLL~rRs~~--k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~   79 (187)
                      +...|+++++++++.+|++||+||+..  +..++|.|++| ||++++||+         +.+||+||+.||||+.+... 
T Consensus         9 ~~~~~~~~~~vi~~~~~~vLl~~r~~~~~~~~~~~~w~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~~-   77 (159)
T 1sjy_A            9 VPVELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIP-SGAVEDGEN---------PQDAAVREACEETGLRVRPV-   77 (159)
T ss_dssp             CCCCEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECS-EEECCTTSC---------HHHHHHHHHHHHHSCCEEEE-
T ss_pred             CCeEEEeEEEEEEeCCCCEEEEEecccCcCCCCCCeEECC-ccccCCCCC---------HHHHHHHHHHHHHCccceee-
Confidence            356789999999998899999999852  44689999997 799999999         89999999999999998643 


Q ss_pred             CCCeeeeeEEEEEccCCCCcceeEEEEEEEEec-CCc-CCC-CccccceEEEecHHHHHHHHHhc
Q 029829           80 VDEFTPLGRILYKAPSDGKWGEHELDYLLFIVR-DVS-VNP-NPDEVAEYKYVNREQLKELLRKA  141 (187)
Q Consensus        80 ~~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~-~~~-~~~Ev~~~~Wv~~~el~~~l~~~  141 (187)
                          .+++.+.+..+.  +  .+...++|.+.. +.. +.+ +++|+.+++|++++++.+++..+
T Consensus        78 ----~~l~~~~~~~~~--~--~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~  134 (159)
T 1sjy_A           78 ----KFLGAYLGRFPD--G--VLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQLYAAG  134 (159)
T ss_dssp             ----EEEEEEEEECTT--S--CEEEEEEEEEEECSSCCCCCCCCSSEEEEEEECHHHHHHHHHTT
T ss_pred             ----EEEEEEecccCC--C--ceEEEEEEEEEccCCCccccCCCCceeEEEEecHHHHHHhhhcc
Confidence                456665544322  2  245667777765 333 555 67899999999999999998865

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.87  E-value=3e-21  Score=148.86  Aligned_cols=118  Identities=15%  Similarity=0.183  Sum_probs=94.2

Q ss_pred             ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829            6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      |+++++++++.+|++||+||+..+..+||.|++.+||++++||+         +.+||+||+.||||+.+....   +.+
T Consensus        34 ~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs---------~~~aa~REl~EEtGl~~~~~~---l~~  101 (171)
T 1q27_A           34 VRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGET---------YEEAFRREAREELNVEIDALS---WRP  101 (171)
T ss_dssp             CEEEEEEEEETTTEEEECCSCCSSSCCCCSCCCSEEEECSSSSC---------HHHHHHHHHHHHHSCTTSSSC---EEE
T ss_pred             ceEEEEEEECCCCeEEEEEecCCCCCCCCccccccCccccCCCC---------HHHHHHHHHHHHHCCcccccc---eEE
Confidence            88999999999999999999887777899999445899999999         899999999999999987542   455


Q ss_pred             eeEEE-EEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhc
Q 029829           86 LGRIL-YKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKA  141 (187)
Q Consensus        86 ~~~~~-y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~  141 (187)
                      ++.+. |..+  .    +...++|.+..+..+.++++|+.+++|++++++.+++...
T Consensus       102 ~~~~~~~~~~--~----~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~  152 (171)
T 1q27_A          102 LASFSPFQTT--L----SSFMCVYELRSDATPIFNPNDISGGEWLTPEHLLARIAAG  152 (171)
T ss_dssp             EEEECSSSSC--C----SSEEEEEEEECCCCCCSCTTTCSCCEEECHHHHHHHHHHH
T ss_pred             EEEEeccCCC--C----ccEEEEEEEEECCccccCchhhheEEEecHHHHHHHHhcC
Confidence            65543 2221  1    1266777777655566777899999999999999887754

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.85  E-value=8e-21  Score=145.63  Aligned_cols=136  Identities=17%  Similarity=0.141  Sum_probs=88.1

Q ss_pred             CCCCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 029829            2 HKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD   81 (187)
Q Consensus         2 ~g~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~   81 (187)
                      .++.|+++.+++++.+|+|||+||+..+..+||.|++| ||++++||+         +.+||+||+.||||+.+....+.
T Consensus        23 ~~~~~~~~~~~ii~~~~~vLL~~r~~~~~~~~g~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~~~~~   92 (165)
T 3oga_A           23 NAMRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALS-GGGVEPGER---------IEEALRREIREELGEQLILSDIT   92 (165)
T ss_dssp             -CCEEEEEEEEEEEETTEEEEEEECC------CCEECC-CEECCTTCC---------HHHHHHHHHHHHHCSSCCEEEEE
T ss_pred             CCcceEEEEEEEEeCCCEEEEEEecCCCCCCCCeEECC-ccccCCCCC---------HHHHHHHHHHHHhCCCcccccee
Confidence            45789999999999899999999997777899999998 699999999         89999999999999998653321


Q ss_pred             CeeeeeEE-EEEccCCCCcce-eEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHH
Q 029829           82 EFTPLGRI-LYKAPSDGKWGE-HELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVV  158 (187)
Q Consensus        82 ~l~~~~~~-~y~~~~~~~~~e-~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~  158 (187)
                      .+.+...+ .+.++. ..... +.+.++|.+.. +..+..+ +|+.+++|++++++.++           .+.|..+.++
T Consensus        93 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~E~~~~~W~~~~el~~~-----------~~~~~~~~~l  159 (165)
T 3oga_A           93 PWTFRDDIRIKTYAD-GRQEEIYMIYLIFDCVSANRDICIN-DEFQDYAWVKPEELALY-----------DLNVATRHTL  159 (165)
T ss_dssp             EEEEEEEEEEEEC---CCEEEEEEEEEEEEEEESCCCCCCC-TTEEEEEEECGGGGGGS-----------CBCHHHHHHH
T ss_pred             eeeeecceeeEecCC-CCceeEEEEEEEEEeeccCCCccCC-chheeeEEccHHHHhhC-----------CCCHHHHHHH
Confidence            11111111 122222 11111 11224444443 3334443 79999999999999863           5777777666


Q ss_pred             HH
Q 029829          159 DN  160 (187)
Q Consensus       159 ~~  160 (187)
                      +.
T Consensus       160 ~~  161 (165)
T 3oga_A          160 AL  161 (165)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.85  E-value=1e-20  Score=141.81  Aligned_cols=122  Identities=17%  Similarity=0.111  Sum_probs=88.8

Q ss_pred             ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829            6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      |.+++++|++ +|+|||+||..      |.|++| ||++++||+         +.+||+||++||||+.+...     .+
T Consensus         4 ~~aag~vv~~-~~~vLL~~r~~------g~W~~P-gG~ve~gEt---------~~~aa~RE~~EEtGl~~~~~-----~~   61 (134)
T 3i7u_A            4 EFSAGGVLFK-DGEVLLIKTPS------NVWSFP-KGNIEPGEK---------PEETAVREVWEETGVKGEIL-----DY   61 (134)
T ss_dssp             EEEEEEEEEE-TTEEEEEECTT------SCEECC-EEECCTTCC---------HHHHHHHHHHHHHSEEEEEE-----EE
T ss_pred             EEEEEEEEEE-CCEEEEEEeCC------CcEECC-eeEecCCCC---------HHHHHHHHHHHhcCceEEEe-----ee
Confidence            5577777776 58999998853      678887 699999999         89999999999999998643     45


Q ss_pred             eeEEEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 029829           86 LGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL  162 (187)
Q Consensus        86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l  162 (187)
                      ++.+.|.++..+... +..+++|.+.. +..+.++ +|+.+++|++++++.+++           .-|..+.+++.++
T Consensus        62 l~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~-~E~~~~~W~~~~e~~~~l-----------~~~~~r~il~~a~  126 (134)
T 3i7u_A           62 IGEIHYWYTLKGERI-FKTVKYYLMKYKEGEPRPS-WEVKDAKFFPIKEAKKLL-----------KYKGDKEIFEKAL  126 (134)
T ss_dssp             EEEEEEEEEETTEEE-EEEEEEEEEEEEEECCCCC-TTSSEEEEEEHHHHHHHB-----------CSHHHHHHHHHHH
T ss_pred             eeeeeEEecCCCceE-EEEEEEEEEEEcCCcCcCC-hhheEEEEEEHHHHhhhc-----------CChHHHHHHHHHH
Confidence            676666554433222 33445566654 3455555 799999999999998763           2355677777664

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.83  E-value=5.7e-20  Score=137.26  Aligned_cols=124  Identities=13%  Similarity=0.027  Sum_probs=87.9

Q ss_pred             ceEEEEEEEeCCCeEEEEEecCCCCC-CCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCee
Q 029829            6 PNIFSILGFVSYSVMSGQQRSGTKVT-FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT   84 (187)
Q Consensus         6 h~av~v~i~~~~g~vLL~rRs~~k~~-~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~   84 (187)
                      ..++++++++ +|+|||+||+..+.. ++|.|++| ||++++||+         +.+||+||+.||||+.+...     .
T Consensus         6 ~~~v~~vi~~-~~~vLL~~r~~~~~~~~~g~w~lP-gG~ve~gE~---------~~~aa~REl~EE~Gl~~~~~-----~   69 (140)
T 3gwy_A            6 IEVVAAVIRL-GEKYLCVQRGQTKFSYTSFRYEFP-GGKVEEGES---------LQEALQREIMEEMDYVIEVG-----E   69 (140)
T ss_dssp             EEEEEEEEEE-TTEEEEEEC---------CCEECS-EEECCTTCC---------HHHHHHHHHHHHHCCCEEEE-----E
T ss_pred             EEEEEEEEEe-CCEEEEEEecCCCCCCCCCeEECC-CccCCCCCC---------HHHHHHHHHHHhhCcEEEec-----e
Confidence            3456666666 799999999876532 89999998 699999999         89999999999999988653     4


Q ss_pred             eeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 029829           85 PLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL  162 (187)
Q Consensus        85 ~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l  162 (187)
                      +++.+.+..+.     .+...++|.+..... .++.+|+.+++|++++++.++           .+.|..+.+++.+.
T Consensus        70 ~~~~~~~~~~~-----~~~~~~~f~~~~~~~-~~~~~E~~~~~W~~~~el~~~-----------~~~~~~~~il~~~~  130 (140)
T 3gwy_A           70 KLLTVHHTYPD-----FEITMHAFLCHPVGQ-RYVLKEHIAAQWLSTREMAIL-----------DWAEADKPIVRKIS  130 (140)
T ss_dssp             EEEEEECCCSS-----CCEEEEEEEEEECCS-CCCCCSSCEEEEECHHHHTTS-----------CBCGGGHHHHHHHH
T ss_pred             EEEEEEEEeCC-----ceEEEEEEEEEecCC-cccccccceeEeccHHHHhhC-----------CCCcccHHHHHHHH
Confidence            46655443321     134567777765322 344579999999999998853           67888888888774

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.83  E-value=3.1e-19  Score=132.27  Aligned_cols=113  Identities=18%  Similarity=0.125  Sum_probs=84.1

Q ss_pred             CceEEEEEEEeC---CCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 029829            5 VPNIFSILGFVS---YSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD   81 (187)
Q Consensus         5 ~h~av~v~i~~~---~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~   81 (187)
                      .++++++++++.   +++|||+||+.    .+|.|++| ||++++||+         +.+||+||+.||||+.+..+.+ 
T Consensus         2 ~~~~~~~vi~~~~~~~~~vLl~~r~~----~~~~w~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~~~~-   66 (138)
T 1ktg_A            2 VVKAAGLVIYRKLAGKIEFLLLQASY----PPHHWTPP-KGHVDPGED---------EWQAAIRETKEEANITKEQLTI-   66 (138)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEESS----TTCCEESS-EEECCTTCC---------HHHHHHHHHHHHHCCCGGGEEE-
T ss_pred             ceEEEEEEEEEecCCCcEEEEEEccC----CCCcEeCC-ccccCCCCC---------HHHHHHHHHHHHHCCCccceEE-
Confidence            578899999876   46899999873    36899997 799999999         8999999999999997765432 


Q ss_pred             Ce-eeeeEEEEEccCCCCcceeEEEEEEEEecCC-cCCCCccccceEEEecHHHHHHHH
Q 029829           82 EF-TPLGRILYKAPSDGKWGEHELDYLLFIVRDV-SVNPNPDEVAEYKYVNREQLKELL  138 (187)
Q Consensus        82 ~l-~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~-~~~~~~~Ev~~~~Wv~~~el~~~l  138 (187)
                       + .+++.+.|..+     ..+...++|.+.... ....+++|+.+++|++++++.+++
T Consensus        67 -~~~~~~~~~~~~~-----~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~  119 (138)
T 1ktg_A           67 -HEDCHETLFYEAK-----GKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAIKIA  119 (138)
T ss_dssp             -EEEEEEEEEEEET-----TEEEEEEEEEEEECSCCCCCCCTTEEEEEEECHHHHHHHH
T ss_pred             -eccccceEEEEeC-----CCceEEEEEEEEecCCcccCCCchhcEeEeccHHHHHHhh
Confidence             1 23444445433     114456677776533 344567899999999999999864

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.83  E-value=8.9e-20  Score=136.12  Aligned_cols=128  Identities=17%  Similarity=0.084  Sum_probs=96.6

Q ss_pred             CCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCe
Q 029829            4 CVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF   83 (187)
Q Consensus         4 ~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l   83 (187)
                      ..++++++++++.+|+|||+||+..+ .++|.|++| ||++++||+         +.+||+||+.||||+.+....   +
T Consensus         6 ~~~~~~~~vi~~~~~~vLl~~r~~~~-~~~g~w~lP-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~~~~---~   71 (144)
T 3r03_A            6 PILLVTAAALIDPDGRVLLAQRPPGK-SLAGLWEFP-GGKLEPGET---------PEAALVRELAEELGVDTRASC---L   71 (144)
T ss_dssp             CEEEEEEEEEBCTTSCEEEEECCTTS-SSTTCEECS-EEECCTTCC---------HHHHHHHHHHHHHCCBCCGGG---C
T ss_pred             ceeEEEEEEEEcCCCEEEEEEeCCCC-CCCCcEECC-CcEecCCCC---------HHHHHHHHHHHHhCceeeccc---e
Confidence            45778888999989999999998665 489999997 799999999         899999999999999987643   2


Q ss_pred             eeeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 029829           84 TPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL  162 (187)
Q Consensus        84 ~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l  162 (187)
                      ..++.+.+....     .+...++|.+..... .++..|+.+++|++++++.++           .+.|..+.+++.+.
T Consensus        72 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~~~  133 (144)
T 3r03_A           72 APLAFASHSYDT-----FHLLMPLYACRSWRG-RATAREGQTLAWVRAERLREY-----------PMPPADLPLIPILQ  133 (144)
T ss_dssp             EEEEEEEEECSS-----SEEEEEEEEECCCBS-CCCCCSSCEEEEECGGGGGGS-----------CCCTTTTTHHHHHH
T ss_pred             EEEEeeeccCCC-----eEEEEEEEEEEecCC-ccCCCCcceEEEEeHHHhccC-----------CCCcchHHHHHHHh
Confidence            334444443321     134557777765322 344678999999999998763           57777788777763

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.83  E-value=3.8e-19  Score=132.92  Aligned_cols=131  Identities=14%  Similarity=0.111  Sum_probs=91.1

Q ss_pred             ceEEEEEEEeCC-CeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCee
Q 029829            6 PNIFSILGFVSY-SVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT   84 (187)
Q Consensus         6 h~av~v~i~~~~-g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~   84 (187)
                      +.++++++++.+ |++||+||+..    ||.|++| ||++++||+         +.+||+||+.||||+.+....+.-+.
T Consensus         9 ~~~v~~~i~~~~~~~vLl~~r~~~----~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~~~~~~~~   74 (150)
T 2o1c_A            9 PVSILVVIYAQDTKRVLMLQRRDD----PDFWQSV-TGSVEEGET---------APQAAMREVKEEVTIDVVAEQLTLID   74 (150)
T ss_dssp             SEEEEEEEEETTTCEEEEEECSSS----TTCEESE-EEECCTTCC---------HHHHHHHHHHHHHCCCHHHHTCCEEE
T ss_pred             ceEEEEEEEeCCCCEEEEEEecCC----CCceECC-ccccCCCCC---------HHHHHHHHHHHHhCCCccccceeEEe
Confidence            468899999875 89999998754    7999997 799999999         89999999999999998753221111


Q ss_pred             eeeEEEEEc------cCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHH
Q 029829           85 PLGRILYKA------PSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVV  158 (187)
Q Consensus        85 ~~~~~~y~~------~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~  158 (187)
                      ......|..      ...++. .+...++|.+........+.+|+.+++|++++++.++           .+.|..+.++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~-----------~~~~~~~~~l  142 (150)
T 2o1c_A           75 CQRTVEFEIFSHLRHRYAPGV-TRNTESWFCLALPHERQIVFTEHLAYKWLDAPAAAAL-----------TKSWSNRQAI  142 (150)
T ss_dssp             EEEEEEEECCGGGGGGBCTTC-CEEEEEEEEEEESSCCCCCCSSSSCEEEEEHHHHHHH-----------CSCHHHHHHH
T ss_pred             eeceeeeeeecccccccCCCC-cceEEEEEEEEcCCCCCcChhHhhccEeecHHHHHhh-----------hcCHHHHHHH
Confidence            122222311      111111 1456677777654332334489999999999999975           4666677777


Q ss_pred             HHHH
Q 029829          159 DNFL  162 (187)
Q Consensus       159 ~~~l  162 (187)
                      +.++
T Consensus       143 ~~~~  146 (150)
T 2o1c_A          143 EQFV  146 (150)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            7663

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.82  E-value=2.4e-19  Score=136.01  Aligned_cols=129  Identities=11%  Similarity=-0.001  Sum_probs=94.8

Q ss_pred             ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829            6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      ..+|++++++.+|+|||+||+..  .++|.|++| ||++++||+         +.+||+||+.||||+.+...   .+.+
T Consensus        18 ~~~v~~vi~~~~~~vLl~~r~~~--~~~g~w~~P-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~~---~~~~   82 (160)
T 1rya_A           18 LVSLDFIVENSRGEFLLGKRTNR--PAQGYWFVP-GGRVQKDET---------LEAAFERLTMAELGLRLPIT---AGQF   82 (160)
T ss_dssp             EEEEEEEEECTTSCEEEEEECSS--SSTTSEECC-EEECCTTCC---------HHHHHHHHHHHHHSSCCCGG---GSEE
T ss_pred             EEEEEEEEEcCCCEEEEEeccCC--CCCCEEECC-ccccCCCCC---------HHHHHHHHHHHHHCCCCCcc---cceE
Confidence            45888999998899999999863  369999998 799999999         89999999999999986421   2355


Q ss_pred             eeEEEEEccCC---CCcceeEEEEEEEEecC-CcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHH
Q 029829           86 LGRILYKAPSD---GKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVD  159 (187)
Q Consensus        86 ~~~~~y~~~~~---~~~~e~e~~~vf~~~~~-~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~  159 (187)
                      ++.+.+..+..   .....+.+.++|.+... ..+.++.+|+.+++|++++++.++          ..+.|+.+.++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~----------~~~~~~~~~~l~  150 (160)
T 1rya_A           83 YGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLAS----------DNVHANSRAYFL  150 (160)
T ss_dssp             EEEEEEEESSBTTBSSSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHHHC----------TTBCHHHHGGGC
T ss_pred             EEEEeEEEcccccCCCcCcEEEEEEEEEEcCccccccCCCccceEEEecHHHHhhc----------cccCHHHHHHHH
Confidence            66665544321   11122456677777653 445566789999999999999873          346676665544

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.82  E-value=2.2e-19  Score=133.12  Aligned_cols=128  Identities=15%  Similarity=0.017  Sum_probs=95.1

Q ss_pred             CCCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCC
Q 029829            3 KCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE   82 (187)
Q Consensus         3 g~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~   82 (187)
                      .+.|+.++++|++.+|+|||+||+..+ .++|.|++| ||++++||+         +.+||+||+.||||+.+...    
T Consensus         5 ~~~~~~~~~~ii~~~~~vLl~~r~~~~-~~~g~w~lP-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~~~----   69 (140)
T 2rrk_A            5 SMKMIEVVAAIIERDGKILLAQRPAQS-DQAGLWEFA-GGKVEPDES---------QRQALVRELREELGIEATVG----   69 (140)
T ss_dssp             TSCEEEEEEEEEEETTEEEEEECCSSC-SCCCCEECC-EEECCTTSC---------HHHHHHHHHHHHSCEEEECC----
T ss_pred             CCccceEEEEEEEcCCEEEEEEcCCCC-CCCCEEECC-ceecCCCCC---------HHHHHHHHHHHHHCCeeecc----
Confidence            456777777777888999999997654 489999997 799999999         89999999999999998643    


Q ss_pred             eeeeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 029829           83 FTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL  162 (187)
Q Consensus        83 l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l  162 (187)
                       .+++.+.+..+.     .+...++|.+..... .++.+|+.+++|++++++.++           .+.|..+.+++.++
T Consensus        70 -~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~~~  131 (140)
T 2rrk_A           70 -EYVASHQREVSG-----RIIHLHAWHVPDFHG-TLQAHEHQALVWCSPEEALQY-----------PLAPADIPLLEAFM  131 (140)
T ss_dssp             -EEEEEEEEEETT-----EEEEEEEEEESEEEE-CCCCSSCSCEEEECHHHHTTS-----------CCCTTHHHHHHHHH
T ss_pred             -cEEEEEEEecCC-----cEEEEEEEEEEeeCC-CcCCCccceeEEeCHHHHhhC-----------CCChhHHHHHHHHH
Confidence             446665554431     133456666653211 234578999999999998753           56777788887775


Q ss_pred             H
Q 029829          163 F  163 (187)
Q Consensus       163 ~  163 (187)
                      .
T Consensus       132 ~  132 (140)
T 2rrk_A          132 A  132 (140)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.81  E-value=4.5e-19  Score=133.92  Aligned_cols=126  Identities=17%  Similarity=0.208  Sum_probs=92.9

Q ss_pred             ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829            6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      |.+|++++ +.+|++||+||+.   ..+|.|++| ||++++||+         +.+||+||+.||||+.+...     .+
T Consensus         5 ~~~v~~ii-~~~~~vLl~~r~~---~~~~~w~~P-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~-----~~   65 (153)
T 3shd_A            5 HVTVACVV-HAEGKFLVVEETI---NGKALWNQP-AGHLEADET---------LVEAAARELWEETGISAQPQ-----HF   65 (153)
T ss_dssp             EEEEEEEE-EETTEEEEEEEEE---TTEEEEECS-EEECCTTCC---------HHHHHHHHHHHHHCCCCCCC-----EE
T ss_pred             ceEEEEEE-EeCCEEEEEEecC---CCCCCEECC-eEEeCCCCC---------HHHHHHHHHHHHHCcccccC-----cE
Confidence            34444444 4578999999972   357899997 799999999         89999999999999998753     44


Q ss_pred             eeEEEEEccCCCCcceeEEEEEEEEecC--CcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q 029829           86 LGRILYKAPSDGKWGEHELDYLLFIVRD--VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF  163 (187)
Q Consensus        86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~~--~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l~  163 (187)
                      ++.+.|..+.  .  .+...++|.+...  ....++.+|+.+++|++++++.    .     .+....|..+..+.+|+.
T Consensus        66 ~~~~~~~~~~--~--~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~----~-----~~~~~~~~~~~~l~~~~~  132 (153)
T 3shd_A           66 IRMHQWIAPD--K--TPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEIL----Q-----ASNLRSPLVAESIRCYQS  132 (153)
T ss_dssp             EEEEEECCTT--S--CCEEEEEEEEECSSCCCCCCCSTTCCEEEEECHHHHH----T-----CSCBSSTHHHHHHHHHHH
T ss_pred             EEEEEEecCC--C--ceEEEEEEEEEccccCcCCCCcccceeeEEecHHHhh----c-----cccccCchHHHHHHHHHh
Confidence            6665555542  1  1445577777653  2356677899999999999992    1     135678888888888854

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.81  E-value=3e-19  Score=135.92  Aligned_cols=128  Identities=16%  Similarity=0.090  Sum_probs=96.0

Q ss_pred             CCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCe
Q 029829            4 CVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF   83 (187)
Q Consensus         4 ~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l   83 (187)
                      ..++++++++++.+|+|||+||+..+ .++|.|++| ||++++||+         +.+||+||+.||||+.+....   +
T Consensus        27 ~~~~~~~~~i~~~~~~vLL~~r~~~~-~~~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~~~---~   92 (158)
T 3hhj_A           27 SLLIVVACALLDQDNRVLLTQRPEGK-SLAGLWEFP-GGKVEQGET---------PEASLIRELEEELGVHVQADN---L   92 (158)
T ss_dssp             CEEEEEEEEEBCTTSEEEEEECCCTT-SCCCCCBCC-EEECCTTCC---------HHHHHHHHHHHHHCCBCCGGG---C
T ss_pred             ceEEEEEEEEEeCCCEEEEEEeCCCC-CCCCEEECC-ceeecCCCC---------HHHHHHHHHHHHhCcEeecce---E
Confidence            34678888899989999999998664 489999997 799999999         899999999999999987643   2


Q ss_pred             eeeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 029829           84 TPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL  162 (187)
Q Consensus        84 ~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l  162 (187)
                      ..++.+.+..+.     .+...++|.+..... .++..|..+++|++++++.++           .+.|..+.+++.++
T Consensus        93 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~il~~~~  154 (158)
T 3hhj_A           93 FPLTFASHGYET-----FHLLMPLYFCSHYKG-VAQGREGQNLKWIFINDLDKY-----------PMPEADKPLVQVLK  154 (158)
T ss_dssp             EEEEEEEEECSS-----CEEEEEEEEESCCBS-CCCCTTSCEEEEEEGGGGGGS-----------CCCTTTHHHHHHHH
T ss_pred             EEEEEEeeccCC-----cEEEEEEEEEEECCC-ccCCccccceEEEcHHHHhhC-----------CCCcchHHHHHHHH
Confidence            334444443321     134556777754322 345679999999999998753           56777788777764

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.81  E-value=7.2e-19  Score=128.34  Aligned_cols=118  Identities=21%  Similarity=0.163  Sum_probs=87.7

Q ss_pred             eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829            7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL   86 (187)
Q Consensus         7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~   86 (187)
                      .++++++++.+|++||+||+.      |.|++| ||++++||+         +.+||+||+.||||+.+...     .++
T Consensus         3 ~~~~~vi~~~~~~vLl~~r~~------g~w~~P-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~~~-----~~~   61 (126)
T 1vcd_A            3 LGAGGVVFNAKREVLLLRDRM------GFWVFP-KGHPEPGES---------LEEAAVREVWEETGVRAEVL-----LPL   61 (126)
T ss_dssp             EEEEEEEECTTSCEEEEECTT------SCEECC-EECCCTTCC---------HHHHHHHHHHHHHCCEEEEE-----EEE
T ss_pred             eEEEEEEEcCCCEEEEEEECC------CCccCC-cCcCCCCCC---------HHHHHHHHHHHhhCcEeeec-----cEE
Confidence            478889999889999999864      789997 799999999         89999999999999998643     456


Q ss_pred             eEEEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 029829           87 GRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL  162 (187)
Q Consensus        87 ~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l  162 (187)
                      +.+.|..+   ..  +...++|.+.. +.. ..+.+|+.+++|++++++.++           ...|..+.+++.++
T Consensus        62 ~~~~~~~~---~~--~~~~~~~~~~~~~~~-~~~~~e~~~~~w~~~~el~~~-----------~~~~~~~~~l~~~~  121 (126)
T 1vcd_A           62 YPTRYVNP---KG--VEREVHWFLMRGEGA-PRLEEGMTGAGWFSPEEARAL-----------LAFPEDLGLLEVAL  121 (126)
T ss_dssp             EEEEEECT---TS--CEEEEEEEEEEEESC-CCCCTTCCEEEEECHHHHHHH-----------BCSHHHHHHHHHHH
T ss_pred             eEEEEecC---Cc--eEEEEEEEEEEcCCC-CCCCcceeeeEEcCHHHHHHh-----------hcChhHHHHHHHHH
Confidence            66656542   12  23345555543 223 334579999999999999875           34555666666664

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.81  E-value=1.5e-19  Score=138.56  Aligned_cols=127  Identities=13%  Similarity=0.059  Sum_probs=96.7

Q ss_pred             CCceEEEEEEEeCC-CeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCC
Q 029829            4 CVPNIFSILGFVSY-SVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE   82 (187)
Q Consensus         4 ~~h~av~v~i~~~~-g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~   82 (187)
                      ..|.++.++|++.+ |+|||+||+.  ..|+|.|.+| ||++++||+         +.+||+||+.||||+.+...    
T Consensus         8 ~~~~~v~~vi~~~~~~~vLL~~r~~--~~~~g~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~----   71 (161)
T 3exq_A            8 PVELVTMVMVTDPETQRVLVEDKVN--VPWKAGHSFP-GGHVEVGEP---------CATAAIREVFEETGLRLSGV----   71 (161)
T ss_dssp             CEEEEEEEEEBCTTTCCEEEECCCC--CTTTCSBBCC-CCBCCTTSC---------HHHHHHHHHHHHHCCEESCC----
T ss_pred             CceEEEEEEEEeCCCCEEEEEEccC--CCCCCCEEcc-ceecCCCCC---------HHHHHHHHHHHhhCcEecCC----
Confidence            45678888888877 7999999983  3588899887 799999999         89999999999999998753    


Q ss_pred             eeeeeEEEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 029829           83 FTPLGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF  161 (187)
Q Consensus        83 l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~  161 (187)
                       .+++.+.+..+...   .+...++|.+.. ...  ++.+|..+++|++++++.++           .+.|..+.++..|
T Consensus        72 -~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~~  134 (161)
T 3exq_A           72 -TFCGTCEWFDDDRQ---HRKLGLLYRASNFTGT--LKASAEGQLSWLPITALTRE-----------NSAASLPEFLQVF  134 (161)
T ss_dssp             -EEEEEEEEECSSCS---SEEEEEEEEECCEESC--CCGGGTTTEEEECGGGCCTT-----------TBCTTHHHHHHHH
T ss_pred             -cEEEEEecccCCCC---eEEEEEEEEEeccCCc--cCCCccceEEEeeHHHhhhC-----------ccChHHHHHHHHH
Confidence             45666655543221   144556776654 222  45678899999999998653           5778888888887


Q ss_pred             HH
Q 029829          162 LF  163 (187)
Q Consensus       162 l~  163 (187)
                      +.
T Consensus       135 ~~  136 (161)
T 3exq_A          135 TG  136 (161)
T ss_dssp             TT
T ss_pred             hh
Confidence            54

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.80  E-value=6.8e-19  Score=132.54  Aligned_cols=126  Identities=10%  Similarity=0.090  Sum_probs=91.5

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829            8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG   87 (187)
Q Consensus         8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~   87 (187)
                      ++.++ ++.+|++||+||+....  +|.|++| ||++++||+         +.+||+||+.||||+.+...     .+++
T Consensus        10 ~v~~i-i~~~~~vLl~~r~~~~~--~~~w~lP-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~~-----~~~~   71 (153)
T 2b0v_A           10 TVAAV-IEQDDKYLLVEEIPRGT--AIKLNQP-AGHLEPGES---------IIQACSREVLEETGHSFLPE-----VLTG   71 (153)
T ss_dssp             EEEEE-CEETTEEEEEEECSSSS--CCEEECS-EEECCTTSC---------HHHHHHHHHHHHHSEEEEEE-----EEEE
T ss_pred             EEEEE-EeeCCEEEEEEEcCCCC--CCeEECC-CcCcCCCCC---------HHHHHHHHHHHhhCcEeccc-----eEEE
Confidence            34444 45578999999986543  8999998 799999999         89999999999999998743     4566


Q ss_pred             EEEEEccCCCCcceeEEEEEEEEecC--CcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 029829           88 RILYKAPSDGKWGEHELDYLLFIVRD--VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL  162 (187)
Q Consensus        88 ~~~y~~~~~~~~~e~e~~~vf~~~~~--~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l  162 (187)
                      .+.|..+..   ..+.+.++|.+...  .....+++|+.+++|++++++.++..        ....|..+.++..|+
T Consensus        72 ~~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~--------~~~~~~~~~~l~~~~  137 (153)
T 2b0v_A           72 IYHWTCASN---GTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQA--------MHRTPLVMQCIEDYH  137 (153)
T ss_dssp             EEEEEETTT---TEEEEEEEEEEEEEEECTTSCCCTTEEEEEEEEHHHHHHTGG--------GBSSTHHHHHHHHHH
T ss_pred             EEEEeCCCC---CcEEEEEEEEEEeCCCCCCCCCCCCeeeEEEecHHHHhhhhc--------ccCcHHHHHHHHHHH
Confidence            665555431   11335566766542  22245568999999999999998722        357788888777774

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.80  E-value=5e-19  Score=135.15  Aligned_cols=125  Identities=17%  Similarity=0.114  Sum_probs=93.8

Q ss_pred             CCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCe
Q 029829            4 CVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF   83 (187)
Q Consensus         4 ~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l   83 (187)
                      ..|.+|+++|++ +|+|||+||+...  ++|.|++| ||++++||+         +.+||+||+.|||||.+...     
T Consensus        27 ~~~~~v~~vi~~-~~~vLL~~r~~~~--~~~~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~-----   88 (157)
T 4dyw_A           27 QPRVGCGAAIVR-DGRILLIKRKRAP--EAGCWGLP-GGKVDWLEP---------VERAVCREIEEELGIALERA-----   88 (157)
T ss_dssp             CCEEEEEEEEEE-TTEEEEEEECSSS--STTCEECC-EEECCTTCC---------HHHHHHHHHHHHHSCEEESC-----
T ss_pred             CceeEEEEEEEE-CCEEEEEEecCCC--CCCEEECC-cccCCCCCC---------HHHHHHHHHHHHHCcccccC-----
Confidence            456788888888 6999999998643  79999998 799999999         89999999999999998754     


Q ss_pred             eeeeEEEEEccCCCCcceeEEEEEEEEec-CCcC-CCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 029829           84 TPLGRILYKAPSDGKWGEHELDYLLFIVR-DVSV-NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF  161 (187)
Q Consensus        84 ~~~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~-~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~  161 (187)
                      .+++.+.+.....   ..+...++|.+.. +..+ ..+++|+.+++|++++++.+            .++|..+.+++.|
T Consensus        89 ~~~~~~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~------------~l~~~~~~~l~~l  153 (157)
T 4dyw_A           89 TLLCVVDHIDAAN---GEHWVAPVYLAHAFSGEPRVVEPDRHEALGWFALDDLPQ------------PLTHATRIALEQV  153 (157)
T ss_dssp             EEEEEEEEEETTT---TEEEEEEEEEESEEESCCCCSCTTTEEEEEEEETTSCCS------------SBCHHHHHHHHHH
T ss_pred             cEEEEEEeeccCC---CcEEEEEEEEEEEcCCCcccCCCCcEeEEEEECHHHccc------------ccCHHHHHHHHHH
Confidence            3466554444321   1244556777654 2222 34568999999999999863            4778788877766

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.80  E-value=6.6e-19  Score=132.58  Aligned_cols=126  Identities=15%  Similarity=0.097  Sum_probs=85.7

Q ss_pred             CCCce-EEEEEEE---eCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 029829            3 KCVPN-IFSILGF---VSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV   78 (187)
Q Consensus         3 g~~h~-av~v~i~---~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~   78 (187)
                      |+.+. +|.|+++   +.+|+|||+||+.     +|.|.+| ||++++||+         +.+||+||+.||||+.+...
T Consensus         1 gm~~~~~v~vvi~~~~~~~~~vLl~~r~~-----~g~w~~P-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~~   65 (149)
T 3son_A            1 GMRQPFQVLVIPFIKTEANYQFGVLHRTD-----ADVWQFV-AGGGEDEEA---------ISETAKRESIEELNLDVDVK   65 (149)
T ss_dssp             ---CCCEEEEEEEEECSSSEEEEEEEESS-----SSCEECE-EEECCTTCC---------HHHHHHHHHHHHHTCCSCCC
T ss_pred             CCCCceEEEEEEEEecCCCeEEEEEEEcC-----CCCEeCC-ccccCCCCC---------HHHHHHHHHHHHhCCCcccc
Confidence            34443 5666665   4567999999975     3999987 799999999         89999999999999998752


Q ss_pred             CCCCeeeeeEEEEEcc-----CCCCcceeEEEEEEEEecC---CcCCCCccccceEEEecHHHHHHHHHhccCCCCCccc
Q 029829           79 PVDEFTPLGRILYKAP-----SDGKWGEHELDYLLFIVRD---VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKL  150 (187)
Q Consensus        79 ~~~~l~~~~~~~y~~~-----~~~~~~e~e~~~vf~~~~~---~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~  150 (187)
                      .    ..+..+ +..+     ..+.  .+...++|.+...   ..+.+ ++|+.+++|++++++.++           ..
T Consensus        66 ~----~~~~~~-~~~~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~-~~E~~~~~W~~~~el~~~-----------~~  126 (149)
T 3son_A           66 M----YSLDSH-ASIPNFHFSFNKP--YVVPEYCFAIDLTSCSYQVTL-SLEHSELRWVSYESAIQL-----------LE  126 (149)
T ss_dssp             E----EEEEEE-EEEEGGGTCSSSC--SEEEEEEEEEECTTTGGGCCC-CTTEEEEEEECHHHHHHH-----------CC
T ss_pred             e----EEEEee-ecccceeeccCCc--eEeEEEEEEEEcCCCCCcccC-CCceeeEEEeCHHHHHHH-----------hc
Confidence            1    112111 2111     1111  1344567777653   34555 489999999999999976           45


Q ss_pred             ChhHHHHHHHHH
Q 029829          151 SPWFRLVVDNFL  162 (187)
Q Consensus       151 ~p~~~~~~~~~l  162 (187)
                      .|..+.++..+.
T Consensus       127 ~~~~~~~l~~~~  138 (149)
T 3son_A          127 WDSNKTALYELN  138 (149)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            577777777663

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.80  E-value=8.6e-19  Score=131.11  Aligned_cols=126  Identities=17%  Similarity=0.091  Sum_probs=87.0

Q ss_pred             CceEEEEEEEeC-CCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCe
Q 029829            5 VPNIFSILGFVS-YSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF   83 (187)
Q Consensus         5 ~h~av~v~i~~~-~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l   83 (187)
                      .|.+++++|++. +|+|||+||+      +|.|++| ||++++||+         +.+||+||+.||||+.+...     
T Consensus        17 ~~~~~~~vi~~~~~~~vLl~~r~------~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~~-----   75 (148)
T 2azw_A           17 TRYAAYIIVSKPENNTMVLVQAP------NGAYFLP-GGEIEGTET---------KEEAIHREVLEELGISVEIG-----   75 (148)
T ss_dssp             ECCEEEEECEEGGGTEEEEEECT------TSCEECS-EEECCTTCC---------HHHHHHHHHHHHHSEEEEEE-----
T ss_pred             eeeEEEEEEECCCCCeEEEEEcC------CCCEeCC-CcccCCCCC---------HHHHHHHHHHHHhCCeeEee-----
Confidence            355788888886 6899999984      3899987 699999999         89999999999999998643     


Q ss_pred             eeeeEEE-EEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 029829           84 TPLGRIL-YKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL  162 (187)
Q Consensus        84 ~~~~~~~-y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l  162 (187)
                      ..++.+. +..+.......+...++|.+........+.+|+.+++|++++++.++           .+.+..+.++..++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~~~  144 (148)
T 2azw_A           76 CYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAVRL-----------LKRGSHRWAVEKWL  144 (148)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEECSSCC-CCSEEEEECHHHHHHH-----------BSCHHHHHHHHHHH
T ss_pred             eEEEEEEEEEcCCCCCcceEEEEEEEEEEcCcCCcCCCCceeeEEEeeHHHHHhh-----------hcchhHHHHHHHHH
Confidence            3355432 22222211112445677777653222234478899999999999876           34455666666664

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.80  E-value=5.5e-19  Score=132.69  Aligned_cols=124  Identities=16%  Similarity=0.036  Sum_probs=92.7

Q ss_pred             ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829            6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      +..+++++++.+|+|||+||+..+ .++|.|++| ||++++||+         +.+||.||+.||||+.+....     .
T Consensus        21 ~~~~~~~i~~~~~~vLl~~r~~~~-~~~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~~~~-----~   84 (153)
T 3ees_A           21 WIPVVAGFLRKDGKILVGQRPENN-SLAGQWEFP-GGKIENGET---------PEEALARELNEELGIEAEVGE-----L   84 (153)
T ss_dssp             EEEEEEEEEEETTEEEEEECCTTS-TTTTCEECS-EEECCTTCC---------HHHHHHHHHHHHHSCEEECCC-----E
T ss_pred             eEEEEEEEEEECCEEEEEEeCCCC-CCCCeEECC-ceeeCCCCC---------HHHHHHHHHHHHHCCccccCc-----e
Confidence            667777788888999999998764 589999997 699999999         899999999999999987643     3


Q ss_pred             eeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 029829           86 LGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL  162 (187)
Q Consensus        86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l  162 (187)
                      ++.+.+..+.     .+...++|.+..... .++.+|+.+++|++++++.++           .+.|..+.+++.++
T Consensus        85 ~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~~~  144 (153)
T 3ees_A           85 KLACTHSYGD-----VGILILFYEILYWKG-EPRAKHHMMLEWIHPEELKHR-----------NIPEANRKILHKIY  144 (153)
T ss_dssp             EEEEEEEETT-----EEEEEEEEEECEEES-CCCCSSSSEEEEECGGGGGGS-----------CCCHHHHTTHHHHH
T ss_pred             EEEEEEecCC-----CeEEEEEEEEEECCC-CcCCCccceEEEecHHHhhhC-----------CCCcchHHHHHHHH
Confidence            5554444432     123446666654211 245679999999999998753           56677777777664

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.79  E-value=9e-19  Score=133.53  Aligned_cols=131  Identities=13%  Similarity=0.086  Sum_probs=90.6

Q ss_pred             CCCCCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCC
Q 029829            1 MHKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV   80 (187)
Q Consensus         1 ~~g~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~   80 (187)
                      |.-..|.+++++|++ +|+|||+||+.     +|.|.+| ||++++||+         +.+||+||++|||||.+.....
T Consensus         1 M~~~~~~~v~~vi~~-~~~vLL~~r~~-----~g~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~~~   64 (159)
T 3f6a_A            1 MSLNRHFTVSVFIVC-KDKVLLHLHKK-----AKKMLPL-GGHIEVNEL---------PEEACIREAKEEAGLNVTLYNP   64 (159)
T ss_dssp             --CCSCEEEEEEEEE-TTEEEEEECSS-----SCCEECE-EEECCTTCC---------HHHHHHHHHHHHHCCCCEECCC
T ss_pred             CCCcceEEEEEEEEE-CCEEEEEEcCC-----CCeEECC-ccCccCCCC---------HHHHHHHHHHHHhCCCceeccc
Confidence            566789999999999 68999999863     6899887 799999999         8999999999999999876543


Q ss_pred             CCee-----------e----eeEEEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHHHHhccCC
Q 029829           81 DEFT-----------P----LGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAG  144 (187)
Q Consensus        81 ~~l~-----------~----~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~  144 (187)
                      ..+.           .    .....+..+    ...+.+.++|.+.. +..+.++++|+.+++|++++++.++       
T Consensus        65 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~----~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~el~~~-------  133 (159)
T 3f6a_A           65 IDINLKKSCDLSGEKLLINPIHTILGDVS----PNHSHIDFVYYATTTSFETSPEIGESKILKWYSKEDLKNA-------  133 (159)
T ss_dssp             CCHHHHHHHHHTTCEEECCCSEEEEECSS----SSSCEEEEEEEEECSCSCCCCCTTSCCCEEEECSSSSTTC-------
T ss_pred             ccccccccccccccccccCccccccccCC----CCceEEEEEEEEEeCCCCcCCCCCcccceEEeeHHHHhhC-------
Confidence            1000           0    000011111    11134556777765 4556667789999999999998854       


Q ss_pred             CCCcccChhHHHHHHHH
Q 029829          145 EEGLKLSPWFRLVVDNF  161 (187)
Q Consensus       145 ~~~~~~~p~~~~~~~~~  161 (187)
                         ..+.+..+.++..+
T Consensus       134 ---~~~~~~~~~l~~~~  147 (159)
T 3f6a_A          134 ---HNIQENILVMATEA  147 (159)
T ss_dssp             ---SSSCHHHHHHHHHH
T ss_pred             ---cCCChhHHHHHHHH
Confidence               22455555655555

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.79  E-value=1.3e-18  Score=137.77  Aligned_cols=132  Identities=11%  Similarity=0.060  Sum_probs=85.2

Q ss_pred             CCCceEEEEEEEeCCC-eEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCC-ccCCCC
Q 029829            3 KCVPNIFSILGFVSYS-VMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGIC-AEDVPV   80 (187)
Q Consensus         3 g~~h~av~v~i~~~~g-~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~-~~~~~~   80 (187)
                      ...|.+++++|++.+| +|||++|.     .+|.|++| ||++++||+         +.+||+||+.||||+. +.....
T Consensus        42 ~~~h~~~~~vv~~~~~~~vLL~~r~-----~~g~w~lP-gG~ve~gEs---------~~eaa~REl~EEtGl~~~~~~~~  106 (197)
T 3fcm_A           42 TIAHLTSSAFAVNKERNKFLMIHHN-----IYNSWAWT-GGHSDNEKD---------QLKVAIKELKEETGVKNPTPLLD  106 (197)
T ss_dssp             SSEEEEEEEEEECTTSCEEEEEEET-----TTTEEECE-EEECTTCCB---------HHHHHHHHHHHHHCCSSCEESCS
T ss_pred             CCccEEEEEEEEECCCCEEEEEEec-----CCCCEECC-ccccCCCCC---------HHHHHHHHHHHHHCCCcccccCC
Confidence            4679999999999886 99999986     46899998 799999999         8999999999999998 432211


Q ss_pred             CCeeeeeEEEEEccCC---CCc---ceeEEEEEEEEec--CCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccCh
Q 029829           81 DEFTPLGRILYKAPSD---GKW---GEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP  152 (187)
Q Consensus        81 ~~l~~~~~~~y~~~~~---~~~---~e~e~~~vf~~~~--~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p  152 (187)
                       .   ...+.|.....   .+.   ....+..+|++..  ...+.++++|+.+++|++++++.+++           ..|
T Consensus       107 -~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~-----------~~~  171 (197)
T 3fcm_A          107 -K---AFALDVLTVNGHIKRGKYVSSHLHLNLTYLIECSEDETLMLKEDENSGVMWIPFNEISKYC-----------SEP  171 (197)
T ss_dssp             -S---CSEEEEEEECCEEETTEEECCEEEEEEEEEEECCTTSCCCCCC----CEEEEEGGGHHHHC-----------CCG
T ss_pred             -C---ceEEEEeeecCccccCcccCCceeEEEEEEEEeCCCcccCCCcccccceEEccHHHHHhhc-----------CCH
Confidence             0   11111211111   000   0011224444443  33456778999999999999999874           345


Q ss_pred             hHHHHHHHHHHH
Q 029829          153 WFRLVVDNFLFK  164 (187)
Q Consensus       153 ~~~~~~~~~l~~  164 (187)
                      +.+.++..++..
T Consensus       172 ~~~~il~~~~~~  183 (197)
T 3fcm_A          172 HMIPIYEKLINK  183 (197)
T ss_dssp             GGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            555666666443

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.79  E-value=1.1e-18  Score=132.67  Aligned_cols=118  Identities=21%  Similarity=0.257  Sum_probs=81.2

Q ss_pred             CCCCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 029829            2 HKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD   81 (187)
Q Consensus         2 ~g~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~   81 (187)
                      .|.+|++|++++++.+|+|||+||+.    +||.|++| ||++++||+         +.+||+||+.|||||.+..+   
T Consensus        10 ~~~~~~~v~~~i~~~~~~vLl~~r~~----~~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~~---   72 (165)
T 1f3y_A           10 PEGYRRNVGICLMNNDKKIFAASRLD----IPDAWQMP-QGGIDEGED---------PRNAAIRELREETGVTSAEV---   72 (165)
T ss_dssp             CSSCCCEEEEEEECTTSCEEEEEETT----EEEEEECC-EEECCTTCC---------HHHHHHHHHHHHHCCCSEEE---
T ss_pred             ccceeeeEEEEEECCCCcEEEEecCC----CCCcEECC-eeccCCCCC---------HHHHHHHHHHHhhCCChhhh---
Confidence            46789999999999999999999973    57999998 699999999         89999999999999987521   


Q ss_pred             CeeeeeE--EEEEccCC----------CCcceeEEEEEEEEecC---CcCCC-----CccccceEEEecHHHHHHHHH
Q 029829           82 EFTPLGR--ILYKAPSD----------GKWGEHELDYLLFIVRD---VSVNP-----NPDEVAEYKYVNREQLKELLR  139 (187)
Q Consensus        82 ~l~~~~~--~~y~~~~~----------~~~~e~e~~~vf~~~~~---~~~~~-----~~~Ev~~~~Wv~~~el~~~l~  139 (187)
                        .....  +.|..+..          ..+. ....++|++...   ..+.+     +++|+.+++|++++++.+++.
T Consensus        73 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~  147 (165)
T 1f3y_A           73 --IAEVPYWLTYDFPPKVREKLNIQWGSDWK-GQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTV  147 (165)
T ss_dssp             --EEECSSCCBCCCCHHHHHHHGGGSCSSCC-SCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHHHBC
T ss_pred             --hcccccceeeecCcccccccccccccccc-CceEEEEEEEecCCcccccccCCCCCCChhheeEEecHHHHHHHhh
Confidence              11100  11211100          0000 112344444431   23333     357999999999999998753

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.79  E-value=2.8e-18  Score=130.55  Aligned_cols=113  Identities=17%  Similarity=0.103  Sum_probs=76.3

Q ss_pred             ceEEEEEEEe---------CCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 029829            6 PNIFSILGFV---------SYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE   76 (187)
Q Consensus         6 h~av~v~i~~---------~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~   76 (187)
                      -||++++++.         +++++||.||+.+    +|.|++| ||++++||+         +.+||+||+.||||+.+.
T Consensus         3 ~ra~G~iifr~~~~~~~~n~~~e~LL~~r~~~----~~~W~lP-gG~ve~gEt---------~~~aa~REl~EEtGl~~~   68 (155)
T 3u53_A            3 LRACGLIIFRRCLIPKVDNNAIEFLLLQASDG----IHHWTPP-KGHVEPGED---------DLETALRETQEEAGIEAG   68 (155)
T ss_dssp             -CEEEEEEEEECCCSSSSSCSEEEEEEEESSS----SCCEECS-EEECCSSCC---------HHHHHHHHHHHHHCCCGG
T ss_pred             ceEeEEEEEccccccceeCCCcEEEEEEecCC----CCCEECC-eeeccCCCC---------HHHHHHHHHHHHHCCccc
Confidence            4688888873         4458999999753    5889997 799999999         899999999999999987


Q ss_pred             CCCCCCeeeeeEEEEEccCCCCcceeEEEEEEEEec-C--CcCCCCccccceEEEecHHHHHHHHH
Q 029829           77 DVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVR-D--VSVNPNPDEVAEYKYVNREQLKELLR  139 (187)
Q Consensus        77 ~~~~~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~-~--~~~~~~~~Ev~~~~Wv~~~el~~~l~  139 (187)
                      ...     .++.+.+......... .....+|++.. +  ..+.+ .+|+.+++|++++|+.+++.
T Consensus        69 ~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~E~~~~~W~~~~ea~~~~~  127 (155)
T 3u53_A           69 QLT-----IIEGFKRELNYVARNK-PKTVIYWLAEVKDYDVEIRL-SHEHQAYRWLGLEEACQLAQ  127 (155)
T ss_dssp             GEE-----EEEEEEEEEEEEETTE-EEEEEEEEEEESCTTCCCCC-CTTEEEEEEECHHHHHHHHC
T ss_pred             cce-----eeeeEeeeeecCCCcc-eeEEEEEEEEEeccCCccCC-CcceeEEEEeEHHHHHHHcC
Confidence            532     2333322221111111 22333344432 2  23333 46999999999999988754

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.78  E-value=2e-18  Score=133.26  Aligned_cols=114  Identities=17%  Similarity=0.161  Sum_probs=80.0

Q ss_pred             Cce-EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCe
Q 029829            5 VPN-IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF   83 (187)
Q Consensus         5 ~h~-av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l   83 (187)
                      .|+ +|++++++ +|++||.+|.... .++|.|++| ||++++||+         +.+||+||+.||||+ +..     +
T Consensus        32 ~~~~~v~vii~~-~~~vLL~~~~r~~-~~~~~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl-~~~-----~   93 (170)
T 1v8y_A           32 EHKPAVAVIALR-EGRMLFVRQMRPA-VGLAPLEIP-AGLIEPGED---------PLEAARRELAEQTGL-SGD-----L   93 (170)
T ss_dssp             EECCEEEEEEEE-TTEEEEEECCBTT-TTBCCBBCS-EEECCTTCC---------HHHHHHHHHHHHHSE-EEE-----E
T ss_pred             ecCCeEEEEEEE-CCEEEEEEEEeCC-CCCCEEECC-ccccCCCCC---------HHHHHHHHHHHHHCC-CcC-----c
Confidence            344 88899999 8999998876443 578999997 799999999         899999999999999 653     3


Q ss_pred             eeeeEEEEEccCCCCcceeEEEEEEEEec--CCcCCCCccccceEEEecHHHHHHHHHhc
Q 029829           84 TPLGRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELLRKA  141 (187)
Q Consensus        84 ~~~~~~~y~~~~~~~~~e~e~~~vf~~~~--~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~  141 (187)
                      .+++.+. ..+   +.. +...++|.+..  .....++++|+.+++|++++++.+++..+
T Consensus        94 ~~l~~~~-~~~---~~~-~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~  148 (170)
T 1v8y_A           94 TYLFSYF-VSP---GFT-DEKTHVFLAENLKEVEAHPDEDEAIEVVWMRPEEALERHQRG  148 (170)
T ss_dssp             EEEEEEE-SCT---TTB-CCEEEEEEEEEEEECC--------CEEEEECHHHHHHHHHTT
T ss_pred             eeeEEEe-cCC---Ccc-ccEEEEEEEEeccccCCCCCCCceEEEEEEEHHHHHHHHHCC
Confidence            4566542 211   111 33556666653  23445567899999999999999999875

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.77  E-value=4.8e-18  Score=128.06  Aligned_cols=115  Identities=18%  Similarity=0.159  Sum_probs=77.0

Q ss_pred             ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829            6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      ..+|++++++.+|++||.+|.... ..++.|++| ||++++||+         +.+||+||++||||+.+..     +.+
T Consensus         5 ~~~v~vi~~~~~~~vLLv~~~r~~-~~~~~w~~P-gG~ve~gEt---------~~~aa~REl~EEtGl~~~~-----~~~   68 (145)
T 2w4e_A            5 PRAVFILPVTAQGEAVLIRQFRYP-LRATITEIV-AGGVEKGED---------LGAAAARELLEEVGGAASE-----WVP   68 (145)
T ss_dssp             CEEEEEEEEETTSEEEEEEEEETT-TTEEEEECE-EEECCTTCC---------HHHHHHHHHHHHHCEECSE-----EEE
T ss_pred             CCEEEEEEEcCCCEEEEEEEEecC-CCCCEEEeC-CccCCCCCC---------HHHHHHHHHHHhhCCccCe-----EEE
Confidence            358889999999998775533221 245799997 699999999         8999999999999998864     234


Q ss_pred             eeEEEEEccCCCCcceeEEEEEEEEec--CCcCCCCccccceEEEecHHHHHHHHHhc
Q 029829           86 LGRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELLRKA  141 (187)
Q Consensus        86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~--~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~  141 (187)
                      ++.+ |..+   +.. ....++|++..  .....++++|+.+++|++++++.+++..+
T Consensus        69 l~~~-~~~~---~~~-~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~  121 (145)
T 2w4e_A           69 LPGF-YPQP---SIS-GVVFYPLLALGVTLGAAQLEDTETIERVVLPLAEVYRMLEAG  121 (145)
T ss_dssp             CCCB-BSCT---TTC-CCEEEEEEEEEEEEC--------CEEEEEEEHHHHHHHHHHT
T ss_pred             EecC-cCCC---Ccc-CceEEEEEEEecccCCCCCCCCCeEEEEEEeHHHHHHHHHcC
Confidence            5442 2111   111 23456666542  23445677899999999999999999875

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.77  E-value=4.2e-18  Score=132.62  Aligned_cols=114  Identities=16%  Similarity=0.070  Sum_probs=87.5

Q ss_pred             eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829            7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL   86 (187)
Q Consensus         7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~   86 (187)
                      .+|++++++.+|++||++|... ..++|.|++| ||++++||+         +.+||+||+.||||+.+...     .++
T Consensus        42 ~~v~v~i~~~~~~vLL~~r~~~-~~~~~~w~~P-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~-----~~l  105 (182)
T 2yvp_A           42 AASFVLPVTERGTALLVRQYRH-PTGKFLLEVP-AGKVDEGET---------PEAAARRELREEVGAEAETL-----IPL  105 (182)
T ss_dssp             EEEEEEEBCTTSEEEEEEEEEG-GGTEEEEECC-EEECCTTCC---------HHHHHHHHHHHHHCEECSCE-----EEC
T ss_pred             CEEEEEEEcCCCEEEEEEeccC-CCCCcEEEec-cccCCCCcC---------HHHHHHHHHHHHhCCCcccE-----EEE
Confidence            4888889999999999998754 3578999997 699999999         89999999999999988642     445


Q ss_pred             eEEEEEccCCCCcceeEEEEEEEEec---CCcCCCCccccceEEEecHHHHHHHHHhc
Q 029829           87 GRILYKAPSDGKWGEHELDYLLFIVR---DVSVNPNPDEVAEYKYVNREQLKELLRKA  141 (187)
Q Consensus        87 ~~~~y~~~~~~~~~e~e~~~vf~~~~---~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~  141 (187)
                      +.+..  .  .+.. +..+++|++..   ...+..+++|+.+++|++++++.+++..+
T Consensus       106 ~~~~~--~--~~~~-~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~  158 (182)
T 2yvp_A          106 PSFHP--Q--PSFT-AVVFHPFLALKARVVTPPTLEEGELLESLELPLTEVYALLAKG  158 (182)
T ss_dssp             CCBCS--C--TTTB-CCEEEEEEECSCEECSCCCCCTTCCEEEEEEEHHHHHHHHHTT
T ss_pred             EEEeC--C--CCcc-ccEEEEEEEeccccCCCCCCCCCceEEEEEEEHHHHHHHHHcC
Confidence            54311  1  1112 34667777753   23445677899999999999999999875

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.77  E-value=2.7e-18  Score=133.85  Aligned_cols=125  Identities=11%  Similarity=0.117  Sum_probs=93.2

Q ss_pred             CceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCee
Q 029829            5 VPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT   84 (187)
Q Consensus         5 ~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~   84 (187)
                      .|+++++++++.+|+|||+||...  .++|.|.+| ||++++||+         +.+||+||+.||||+.+...     .
T Consensus        23 ~~~~~~~~vi~~~~~vLL~~r~~~--~~~g~W~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~-----~   85 (176)
T 3q93_A           23 ASRLYTLVLVLQPQRVLLGMKKRG--FGAGRWNGF-GGKVQEGET---------IEDGARRELQEESGLTVDAL-----H   85 (176)
T ss_dssp             CEEEEEEEEEECSSEEEEEEECSS--TTTTSEECE-EEECCTTSC---------HHHHHHHHHHHHHSCEESCC-----E
T ss_pred             CCcEEEEEEEEeCCEEEEEEEcCC--CCCCeEECc-eecCCCCCC---------HHHHHHHHHHHHHCCcceee-----E
Confidence            367777888888899999998643  479999997 799999999         89999999999999998743     5


Q ss_pred             eeeEEEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 029829           85 PLGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL  162 (187)
Q Consensus        85 ~~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l  162 (187)
                      +++.+.+..+...   .+...++|.+.. +..  +...|..+++|++++++.++           .+.|..+.++..++
T Consensus        86 ~l~~~~~~~~~~~---~~~~~~~f~~~~~~~~--~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~~~  148 (176)
T 3q93_A           86 KVGQIVFEFVGEP---ELMDVHVFCTDSIQGT--PVESDEMRPCWFQLDQIPFK-----------DMWPDDSYWFPLLL  148 (176)
T ss_dssp             EEEEEEEEETTCS---CEEEEEEEEESCEESC--CCCCSSEEEEEEETTCCCGG-----------GBCTTHHHHHHHHH
T ss_pred             EEEEEEEEcCCCC---cEEEEEEEEEECCCCC--cCCCcceeeEEeeHHHcccc-----------ccCcchHHHHHHHH
Confidence            6777766654322   134557777753 233  33457788899999998753           56676777777664

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.77  E-value=2.4e-19  Score=144.93  Aligned_cols=137  Identities=9%  Similarity=0.145  Sum_probs=86.6

Q ss_pred             CCCCceEEEEEEEeCCCeEEEEEecCCCC--CCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCC
Q 029829            2 HKCVPNIFSILGFVSYSVMSGQQRSGTKV--TFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVP   79 (187)
Q Consensus         2 ~g~~h~av~v~i~~~~g~vLL~rRs~~k~--~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~   79 (187)
                      ++.+|..+..+|+..+|++|++||+..+.  .++|.|++.+|||+++||+.   ++.+.+++||+||++|||||.+..  
T Consensus        63 d~~~~q~i~~~II~~~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~---~p~EtleeAa~REl~EEtGl~v~~--  137 (211)
T 3e57_A           63 DETTKQVIPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGA---TPREAFLKGLEREVNEEVDVSLRE--  137 (211)
T ss_dssp             CTTEEEEEEEEEEEETTEEEEEEC------------CBSSEECCCBGGGCS---SHHHHHHHHHHHHHHHHEEEEEEE--
T ss_pred             CCcccceEEEEEEEECCEEEEEEECCCCCcccccCCcccccceEEeCCCCC---CchhhHHHHHHHHHHHHhCCeeec--
Confidence            34566666666666689999999986542  47899999669999999971   111236999999999999997754  


Q ss_pred             CCCeeeeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHH
Q 029829           80 VDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVD  159 (187)
Q Consensus        80 ~~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~  159 (187)
                         +.++|.+.+....   .+...+.++|.+... ...++..|+.+++|++++++.++..         .+-+|.+.+++
T Consensus       138 ---~~~ig~~~~~~~~---~~~~~l~~~f~~~~~-~g~~~~~E~~~~~W~~~~eL~~~~~---------~le~wS~lvl~  201 (211)
T 3e57_A          138 ---LEFLGLINSSTTE---VSRVHLGALFLGRGK-FFSVKEKDLFEWELIKLEELEKFSG---------VMEGWSKISAA  201 (211)
T ss_dssp             ---EEEEEEEECCSSH---HHHTEEEEEEEEEEE-EEEESCTTTCEEEEEEHHHHHHHGG---------GCCHHHHHHHH
T ss_pred             ---cEEEEEEeccCCC---CCeEEEEEEEEEEeC-CceeCCCCeEEEEEEEHHHHHHhHh---------hccchhHHHHH
Confidence               3557665442211   111224456666542 2344567889999999999998744         35566666554

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.76  E-value=1.3e-18  Score=136.59  Aligned_cols=137  Identities=15%  Similarity=0.075  Sum_probs=93.6

Q ss_pred             CCceEEEEEEEe---C----CCeEEEEEecC-----CCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHh
Q 029829            4 CVPNIFSILGFV---S----YSVMSGQQRSG-----TKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDEL   71 (187)
Q Consensus         4 ~~h~av~v~i~~---~----~g~vLL~rRs~-----~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~   71 (187)
                      ..|.+|.++|+.   .    +++|||+||+.     .+..++|.|.+| ||++++||+         +.+||+||++|||
T Consensus        25 p~~~~v~~vv~~~~~~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lP-GG~ve~gEs---------~~~aa~REl~EEt   94 (187)
T 3i9x_A           25 PDGYTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVP-GGFVDENES---------AEQAAERELEEET   94 (187)
T ss_dssp             CSEEEEEEEEEEEEEETTEEEEEEEEEECCSBCTTSSBCTTTTCEECS-EEECCTTSC---------HHHHHHHHHHHHH
T ss_pred             cccceEEEEEEEEcCCCCCCCCEEEEEEEccccccccCCCCCCEEECC-ceeCCCCCC---------HHHHHHHHHHHHH
Confidence            345677777755   2    36899999975     344689999998 799999999         8999999999999


Q ss_pred             CCCccCCCCCCeeeeeEEEEEccCCCCcceeEEEEEEEEecC---CcCCCCccccceEEEecHHHHHHHHHhccCCCCCc
Q 029829           72 GICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD---VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGL  148 (187)
Q Consensus        72 Gl~~~~~~~~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~---~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~  148 (187)
                      ||.+...     ..++.  |..+...... +.+..+|++...   .....+.+|+.+++|++++++..+           
T Consensus        95 Gl~~~~~-----~~l~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~-----------  155 (187)
T 3i9x_A           95 SLTDIPL-----IPFGV--FDKPGRDPRG-WIISRAFYAIVPPEALEKRAAGDDAAEIGLFPMTEALEL-----------  155 (187)
T ss_dssp             CCCSCCC-----EEEEE--ECCTTSSTTS-SEEEEEEEEECCHHHHHHHHHSTTTTTEEEEEHHHHTTS-----------
T ss_pred             CCCCcce-----EEEEE--EcCCccCCCC-CEEEEEEEEEEcCcccCCcCCCCceeEEEEEeHHHcccC-----------
Confidence            9987643     44655  3332211111 233344444332   111234579999999999998842           


Q ss_pred             ccChhHHHHHHHHHHHHHhHh
Q 029829          149 KLSPWFRLVVDNFLFKWWDHL  169 (187)
Q Consensus       149 ~~~p~~~~~~~~~l~~~~~~~  169 (187)
                      .+.|..+.++..++......+
T Consensus       156 ~l~~~~~~il~~a~~~l~~~~  176 (187)
T 3i9x_A          156 PLAFDHLDMLKKAFSAITEEF  176 (187)
T ss_dssp             CBSTTHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHHHhhh
Confidence            577778888888766554443

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.76  E-value=3.6e-18  Score=129.18  Aligned_cols=124  Identities=11%  Similarity=0.066  Sum_probs=85.8

Q ss_pred             CCceEEEEEEEeCCCe----EEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCC
Q 029829            4 CVPNIFSILGFVSYSV----MSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVP   79 (187)
Q Consensus         4 ~~h~av~v~i~~~~g~----vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~   79 (187)
                      ..|.++++++++ +|+    +|+++|+...  |+| |.+| ||++++||+         +.+||+||+.||||+.+... 
T Consensus         6 ~~~~~~~~ii~~-~~~~~~~vLl~~r~~~~--~~g-w~lP-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~~-   70 (155)
T 2b06_A            6 LTILTNICLIED-LETQRVVMQYRAPENNR--WSG-YAFP-GGHVENDEA---------FAESVIREIYEETGLTIQNP-   70 (155)
T ss_dssp             CEEEEEEEEEEE-TTTTEEEEEEEC-------CCE-EECC-CCBCCTTSC---------HHHHHHHHHHHHHSEEEESC-
T ss_pred             CcEEEEEEEEEE-CCCCeEEEEEEECCCCC--CCC-Eecc-ceecCCCCC---------HHHHHHHHHHHHhCccccCC-
Confidence            356778888877 455    9999998764  788 9986 799999999         89999999999999998753 


Q ss_pred             CCCeeeeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHH
Q 029829           80 VDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVD  159 (187)
Q Consensus        80 ~~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~  159 (187)
                          ..++.+.+..+.  .  .+...++|.+..... .++..|+.+++|++++++.++           .+.+..+.+++
T Consensus        71 ----~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~  130 (155)
T 2b06_A           71 ----QLVGIKNWPLDT--G--GRYIVICYKATEFSG-TLQSSEEGEVSWVQKDQIPNL-----------NLAYDMLPLME  130 (155)
T ss_dssp             ----EEEEEEEEECTT--S--CEEEEEEEEECEEEE-CCCCBTTBEEEEEEGGGGGGS-----------CBCTTHHHHHH
T ss_pred             ----cEEEEEeeccCC--C--ceEEEEEEEEEecCC-CCCCCcceeeEEeeHHHhhhC-----------CCChhHHHHHH
Confidence                345655444321  1  134556676653211 234478999999999998863           45677777777


Q ss_pred             HHH
Q 029829          160 NFL  162 (187)
Q Consensus       160 ~~l  162 (187)
                      .++
T Consensus       131 ~~~  133 (155)
T 2b06_A          131 MME  133 (155)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            664

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.76  E-value=3.8e-19  Score=134.90  Aligned_cols=110  Identities=15%  Similarity=0.074  Sum_probs=81.5

Q ss_pred             CCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCe
Q 029829            4 CVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF   83 (187)
Q Consensus         4 ~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l   83 (187)
                      ..++++++++++.+|+|||+||+..  .++|.|++| ||++++||+         +.+||+||+.||||+.+...     
T Consensus        18 ~~~~~v~~~i~~~~~~vLl~~r~~~--~~~~~w~~P-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~~-----   80 (156)
T 3gg6_A           18 NVCYVVLAVFLSEQDEVLLIQEAKR--ECRGSWYLP-AGRMEPGET---------IVEALQREVKEEAGLHCEPE-----   80 (156)
T ss_dssp             TCEEEEEEECBCTTSEEEEEECCCT--TSTTCEECS-EEECCTTCC---------HHHHHHHHHHHHHCEEEEEE-----
T ss_pred             ceEEEEEEEEEeCCCEEEEEEecCC--CCCCEEECC-eeeccCCCC---------HHHHHHHHHHHhhCceeEee-----
Confidence            3456788888999999999999853  379999997 799999999         89999999999999988743     


Q ss_pred             eeeeEEEEEccCCCCcceeEEEEEEEEec-CCcC---CCCccccceEEEecHHHHHHHH
Q 029829           84 TPLGRILYKAPSDGKWGEHELDYLLFIVR-DVSV---NPNPDEVAEYKYVNREQLKELL  138 (187)
Q Consensus        84 ~~~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~---~~~~~Ev~~~~Wv~~~el~~~l  138 (187)
                      ..++.+  ...  .    +.+.++|.+.. +..+   ..+++|+.+++|++++++.+++
T Consensus        81 ~~~~~~--~~~--~----~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~  131 (156)
T 3gg6_A           81 TLLSVE--ERG--P----SWVRFVFLARPTGGILKTSKEADAESLQAAWYPRTSLPTPL  131 (156)
T ss_dssp             EEEEEE--ESS--T----TEEEEEEEEEEEEECCCCGGGCSSSCSEEEEEETTSCCSSB
T ss_pred             eEEEEE--cCC--C----CEEEEEEEEEeeCCeeccCCCCCcceeeeEEEcHHHCcccc
Confidence            335442  211  1    22445666653 2222   2345799999999999987643

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.75  E-value=3.1e-18  Score=131.80  Aligned_cols=123  Identities=11%  Similarity=0.053  Sum_probs=82.8

Q ss_pred             CCCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCC
Q 029829            3 KCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE   82 (187)
Q Consensus         3 g~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~   82 (187)
                      ...+.+|++++++ +|+|||+||...    +|.|++| ||++++||+         +.+||+||++||||+.+...    
T Consensus        20 ~~~~~~v~~ii~~-~~~vLL~~r~~~----~~~w~~P-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~----   80 (171)
T 3id9_A           20 NIMQVRVTGILIE-DEKVLLVKQKVA----NRDWSLP-GGRVENGET---------LEEAMIREMREETGLEVKIK----   80 (171)
T ss_dssp             --CEEEEEEEEEE-TTEEEEEECSST----TCCEECC-EEECCTTCC---------HHHHHHHHHHHHHCCCEEEE----
T ss_pred             CceEEEEEEEEEE-CCEEEEEEEECC----CCeEECC-CccCCCCCC---------HHHHHHHHHHHHHCCccccc----
Confidence            4566778888877 589999998753    7999997 799999999         89999999999999998643    


Q ss_pred             eeeeeEEEEEccCCCCcceeEEEEEEEEec-CCcC-----CCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHH
Q 029829           83 FTPLGRILYKAPSDGKWGEHELDYLLFIVR-DVSV-----NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRL  156 (187)
Q Consensus        83 l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~-----~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~  156 (187)
                       ..++.+.+  +...  . ....++|.+.. ...+     .++.+|+.+++|++++++.++           .+.|..+.
T Consensus        81 -~~~~~~~~--~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~-----------~~~~~~~~  143 (171)
T 3id9_A           81 -KLLYVCDK--PDAS--P-SLLHITFLLERIEGEITLPSNEFDHNPIHDVQMVPINELSYY-----------GFSETFIN  143 (171)
T ss_dssp             -EEEEEEEE--TTSS--S-CEEEEEEEEEEC-------------CCCCCEEEEETGGGGGG-----------TCCTTCSH
T ss_pred             -eEEEEEcc--cCCC--C-cEEEEEEEEEEcCCcccCCccCCCcCeeeeEEEEeHHHHhhC-----------CCCHHHHH
Confidence             33444333  2211  1 22334444443 2222     236689999999999999864           46666666


Q ss_pred             HHHHH
Q 029829          157 VVDNF  161 (187)
Q Consensus       157 ~~~~~  161 (187)
                      ++.++
T Consensus       144 ~l~~~  148 (171)
T 3id9_A          144 LISGG  148 (171)
T ss_dssp             HHHHG
T ss_pred             HHHHh
Confidence            66655

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.75  E-value=1.7e-17  Score=124.18  Aligned_cols=110  Identities=13%  Similarity=0.144  Sum_probs=77.1

Q ss_pred             ceEEEEEEEeCC-CeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCee
Q 029829            6 PNIFSILGFVSY-SVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT   84 (187)
Q Consensus         6 h~av~v~i~~~~-g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~   84 (187)
                      .++++++|++.+ |+|||+||+.     +|.|++| ||++++||+         +.+||+||+.||||+.+....     
T Consensus         4 i~~~~~~i~~~~~~~vLl~~r~~-----~g~w~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~~~-----   63 (146)
T 2jvb_A            4 IPVRGAAIFNENLSKILLVQGTE-----SDSWSFP-RGKISKDEN---------DIDCCIREVKEEIGFDLTDYI-----   63 (146)
T ss_dssp             SCCEEEEEBCTTSSEEEEECCSS-----SSCCBCC-EECCCSSSC---------HHHHHHHHHHHHTSCCCSSSS-----
T ss_pred             eEEEEEEEEeCCCCEEEEEEEcC-----CCcEECC-cccCCCCCC---------HHHHHHHHHHHHHCCCchHhc-----
Confidence            356788888876 8999998763     5899997 799999999         899999999999999887531     


Q ss_pred             eeeEEEEEccCCCCcceeEEEEEEEEec---CCcCCC-CccccceEEEecHHHHHHHHHhc
Q 029829           85 PLGRILYKAPSDGKWGEHELDYLLFIVR---DVSVNP-NPDEVAEYKYVNREQLKELLRKA  141 (187)
Q Consensus        85 ~~~~~~y~~~~~~~~~e~e~~~vf~~~~---~~~~~~-~~~Ev~~~~Wv~~~el~~~l~~~  141 (187)
                      .++.+.... ..   .  ...++|++..   .....+ +.+|+.+++|++++++.+++...
T Consensus        64 ~~~~~~~~~-~~---~--~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~  118 (146)
T 2jvb_A           64 DDNQFIERN-IQ---G--KNYKIFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYKS  118 (146)
T ss_dssp             CSSCEEEEE-ET---T--EEEEEEEECCCCSSSCCCCCCSSSCCCEEEEEHHHHHTGGGCS
T ss_pred             ccccccccc-cC---C--ceEEEEEEEeccccccCCcCCcchhheeEEeEHHHHHhhhccc
Confidence            122222211 11   1  1234444432   122233 36899999999999999977654

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.75  E-value=2.3e-18  Score=135.55  Aligned_cols=111  Identities=15%  Similarity=-0.062  Sum_probs=78.0

Q ss_pred             EEEEEEEeCCC--eEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829            8 IFSILGFVSYS--VMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         8 av~v~i~~~~g--~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      ++.+++++.+|  +|||+||+..+..++|.|++| ||++++||+         +.+||+||+.||||+.+...     .+
T Consensus        36 ~~~~v~i~~~~~~~vLL~~r~~~~~~~~g~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~-----~~  100 (194)
T 1nqz_A           36 AAVLVALTREADPRVLLTVRSSELPTHKGQIAFP-GGSLDAGET---------PTQAALREAQEEVALDPAAV-----TL  100 (194)
T ss_dssp             EEEEEEEESSSSCBBCEEEEC------CCCEECS-EEECCTTCC---------HHHHHHHHHHHHHCCCGGGC-----EE
T ss_pred             EEEEEEEecCCCeEEEEEEecCCCCCCCCeEECC-cccCCCCCC---------HHHHHHHHHHHHHCCCccce-----EE
Confidence            44444457778  999999987766789999997 799999998         89999999999999988753     44


Q ss_pred             eeEEEEEccCCCCcceeEEEEEEEEecC--Cc-CCCCccccceEEEecHHHH-HHHH
Q 029829           86 LGRILYKAPSDGKWGEHELDYLLFIVRD--VS-VNPNPDEVAEYKYVNREQL-KELL  138 (187)
Q Consensus        86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~~--~~-~~~~~~Ev~~~~Wv~~~el-~~~l  138 (187)
                      ++.+.+.....     +...++|++...  .. ..++++|+.+++|++++++ .+..
T Consensus       101 l~~~~~~~~~~-----~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~  152 (194)
T 1nqz_A          101 LGELDDVFTPV-----GFHVTPVLGRIAPEALDTLRVTPEVAQIITPTLAELRAVPL  152 (194)
T ss_dssp             EEECCCEEETT-----TEEEEEEEEEECGGGGGGCCCCTTEEEEECCBHHHHHHSCC
T ss_pred             EEEccCccCCC-----CeEEEEEEEEecCCccccCCCccceeEEEEEEHHHhccCCC
Confidence            65543332211     234566666543  33 4567789999999999999 6543

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.75  E-value=2e-17  Score=127.59  Aligned_cols=115  Identities=17%  Similarity=0.131  Sum_probs=82.6

Q ss_pred             CCCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCC
Q 029829            3 KCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE   82 (187)
Q Consensus         3 g~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~   82 (187)
                      ..+|.+|++++++.+|+|||++|+.     +|.|++| ||++++||+         +.+||+||+.||||+.+...    
T Consensus         5 ~~~~~~v~~~i~~~~~~vLl~~r~~-----~~~w~~p-~G~~e~gE~---------~~~aa~RE~~EE~G~~~~~~----   65 (164)
T 2kdv_A            5 DGYRPNVGIVICNRQGQVMWARRFG-----QHSWQFP-QGGINPGES---------AEQAMYRELFEEVGLSRKDV----   65 (164)
T ss_dssp             SSEEEEEEEEEECTTSEEEEEEETT-----CCCEECC-EEECCTTCC---------HHHHHHHHHHHHHCCCGGGE----
T ss_pred             CCCCcEEEEEEEccCCEEEEEEEcC-----CCeEECC-eeecCCCCC---------HHHHHHHHHHHHHCCCccce----
Confidence            3578899999999999999999874     6899997 699999999         89999999999999998743    


Q ss_pred             eeeeeEE----EEEccCCC------CcceeEEEEEEEEecC---CcCCCC---ccccceEEEecHHHHHHH
Q 029829           83 FTPLGRI----LYKAPSDG------KWGEHELDYLLFIVRD---VSVNPN---PDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        83 l~~~~~~----~y~~~~~~------~~~e~e~~~vf~~~~~---~~~~~~---~~Ev~~~~Wv~~~el~~~  137 (187)
                       .+++.+    .|..+...      ........++|++...   ..+.++   .+|+.+++|++++++.+.
T Consensus        66 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~E~~~~~W~~~~e~~~~  135 (164)
T 2kdv_A           66 -RILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRWVSYWYPVRQ  135 (164)
T ss_dssp             -EEEEECSSCEEEECCTTTCCTTSSSCCCEEEEEEEEEEESSCGGGCCSCSSSSCSEEEEEEEETTTGGGG
T ss_pred             -EEEEEecceeEEecCcceeeeccCcccccceeEEEEEEecCCccccccCCCCCchhceEEEecHHHhhhh
Confidence             345443    34443211      0111234456666532   233443   359999999999987643

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.75  E-value=4.3e-19  Score=129.69  Aligned_cols=118  Identities=14%  Similarity=0.133  Sum_probs=83.4

Q ss_pred             EEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeEEE
Q 029829           11 ILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRIL   90 (187)
Q Consensus        11 v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~~~   90 (187)
                      +++++.+|++||+||+..+ .++|.|++| ||++++||+         +.+||.||+.||||+.+....     +++.+.
T Consensus         9 ~ii~~~~~~vLl~~r~~~~-~~~g~w~~P-gG~~e~gE~---------~~~aa~RE~~EE~G~~~~~~~-----~~~~~~   72 (129)
T 1mut_A            9 GIIRNENNEIFITRRAADA-HMANKLEFP-GGKIEMGET---------PEQAVVRELQEEVGITPQHFS-----LFEKLE   72 (129)
T ss_dssp             EECEETTTEEEEEECSSCC-SSSCCEECC-CCCSSSCSS---------TTHHHHHHHHTTTCCSSCEEC-----CCCCCB
T ss_pred             EEEEecCCEEEEEEeCCCC-CCCCeEECC-ccCcCCCCC---------HHHHHHHHHHHHhCCccccce-----EEEEEE
Confidence            3456778999999998765 689999997 799999999         799999999999999986533     244332


Q ss_pred             EEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 029829           91 YKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF  161 (187)
Q Consensus        91 y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~  161 (187)
                      +..+  ..   +...++|.+..... .++.+|+.+++|++++++.++           .+.|..+.+++.+
T Consensus        73 ~~~~--~~---~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~l  126 (129)
T 1mut_A           73 YEFP--DR---HITLWFWLVERWEG-EPWGKEGQPGEWMSLVGLNAD-----------DFPPANEPVIAKL  126 (129)
T ss_dssp             CCCS--SC---EEECCCEEEEECSS-CCCCCSSCCCEEEESSSCCTT-----------TSCTTCHHHHHHH
T ss_pred             EecC--Cc---eEEEEEEEEEccCC-ccCCcccceeEEeCHHHcccc-----------cCCchhHHHHHHH
Confidence            2221  11   22345666654221 234578999999999998753           4666667666654

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.75  E-value=2.3e-17  Score=130.81  Aligned_cols=127  Identities=15%  Similarity=0.157  Sum_probs=82.3

Q ss_pred             eEEEEEEEeC-CCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829            7 NIFSILGFVS-YSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         7 ~av~v~i~~~-~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      .+|.+++++. +++|||+||..   .++|.|++| ||++++||+         +.+||+||+.||||+.+....     .
T Consensus        27 v~v~~~v~~~~~~~vLL~~r~~---~~~g~w~lP-GG~ve~gEs---------~~~aA~REl~EEtGl~~~~~~-----l   88 (199)
T 3h95_A           27 VGVAGAVFDESTRKILVVQDRN---KLKNMWKFP-GGLSEPEED---------IGDTAVREVFEETGIKSEFRS-----V   88 (199)
T ss_dssp             CEEEEEEEETTTTEEEEEEESS---SSTTSBBCC-EEECCTTCC---------HHHHHHHHHHHHHCCCEEEEE-----E
T ss_pred             ceEEEEEEeCCCCEEEEEEEcC---CCCCCEECC-ccccCCCCC---------HHHHHHHHHHHHhCCccccce-----E
Confidence            4677777775 47999999864   368999998 799999999         899999999999999986432     2


Q ss_pred             eeEEEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 029829           86 LGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL  162 (187)
Q Consensus        86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l  162 (187)
                      ++. .......+......+.+++.+.. +..+.++++|+.+++|++++++.++.          ...|..+.++..++
T Consensus        89 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~----------~~~~~~~~~~~~~~  155 (199)
T 3h95_A           89 LSI-RQQHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAKTE----------NTTPITSRVARLLL  155 (199)
T ss_dssp             EEE-EECC---------CEEEEEEEEESCCCCCCCTTTEEEEEEEEHHHHHHCS----------SBCHHHHHHHHHHH
T ss_pred             EEE-EeeecCCCCceeEEEEEEEEEcCCCcccCCCccceeeeEEEeHHHHhhhh----------hcChHHHHHHHHHH
Confidence            331 11111111111011222222222 34556778999999999999999763          33454555555443

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.74  E-value=1.3e-17  Score=124.07  Aligned_cols=124  Identities=15%  Similarity=0.093  Sum_probs=85.8

Q ss_pred             ceEEEEEEEe--CCCe--EEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 029829            6 PNIFSILGFV--SYSV--MSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD   81 (187)
Q Consensus         6 h~av~v~i~~--~~g~--vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~   81 (187)
                      +.++++++++  .+|+  +||+||+..    |+.|++| ||++++||+         +.+||+||+.||||+.+...   
T Consensus         9 ~~~v~~vi~~~~~~~~~~vLl~~r~~~----~~~w~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~~---   71 (139)
T 2yyh_A            9 LLATDVIIRLWDGENFKGIVLIERKYP----PVGLALP-GGFVEVGER---------VEEAAAREMREETGLEVRLH---   71 (139)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEECSS----SCSEECC-EEECCTTCC---------HHHHHHHHHHHHHCCCCEEE---
T ss_pred             eEEEEEEEEEEcCCCcEEEEEEEecCC----CCcEECc-cccCCCCCC---------HHHHHHHHHHHHHCCCcccc---
Confidence            4577777776  6788  999999753    4569997 799999999         89999999999999988643   


Q ss_pred             CeeeeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 029829           82 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF  161 (187)
Q Consensus        82 ~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~  161 (187)
                        .+++.  |..+..+.. .+...++|.+.....+. +.+|+.+++|++++++..           ..+.+..+.++..+
T Consensus        72 --~~~~~--~~~~~~~~~-~~~~~~~f~~~~~~~~~-~~~e~~~~~W~~~~el~~-----------~~l~~~~~~~l~~~  134 (139)
T 2yyh_A           72 --KLMGV--YSDPERDPR-AHVVSVVWIGDAQGEPK-AGSDAKKVKVYRLEEIPL-----------DKLVFDHKKIILDF  134 (139)
T ss_dssp             --EEEEE--ECCTTSCTT-SCEEEEEEEEEEESCCC-CCTTEEEEEEECTTSCCG-----------GGBCTTHHHHHHHH
T ss_pred             --eEEEE--ECCCCcCCC-ceEEEEEEEEecCCccC-CCCCcceEEEEEHHHCCH-----------hhcCCCHHHHHHHH
Confidence              33443  333222111 14566777776544343 457999999999999872           02344456667766


Q ss_pred             HH
Q 029829          162 LF  163 (187)
Q Consensus       162 l~  163 (187)
                      +.
T Consensus       135 l~  136 (139)
T 2yyh_A          135 LK  136 (139)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.73  E-value=3.5e-18  Score=130.12  Aligned_cols=126  Identities=13%  Similarity=0.087  Sum_probs=85.0

Q ss_pred             eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCC-eee
Q 029829            7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE-FTP   85 (187)
Q Consensus         7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~-l~~   85 (187)
                      .+++++|++ +|+|||+||+.     +|.|++| ||++++||+         +.+||+||+.||||+.+....... +..
T Consensus         2 ~~~~~vi~~-~~~vLL~~r~~-----~g~W~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~~~~~~~~~   65 (156)
T 1k2e_A            2 IVTSGVLVE-NGKVLLVKHKR-----LGVYIYP-GGHVEHNET---------PIEAVKREFEEETGIVVEPIGFTYGIID   65 (156)
T ss_dssp             EEEEEECEE-TTEEEEEECTT-----TCSEECS-EEECCTTCC---------HHHHHHHHHHHHHSEEEEECCCCCCCBS
T ss_pred             eEEEEEEEE-CCEEEEEEEcC-----CCcEECC-eeecCCCCC---------HHHHHHHHHHHHHCCcceeccceeeecc
Confidence            467778888 88999999863     6899997 799999999         899999999999999987543210 000


Q ss_pred             ----------eeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHH
Q 029829           86 ----------LGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR  155 (187)
Q Consensus        86 ----------~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~  155 (187)
                                .....+. ...+. ....+..+|.+..      ..+|+.+++|++++++.+           ..+.|..+
T Consensus        66 ~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~f~~~~------~~~e~~~~~W~~~~el~~-----------~~~~~~~~  126 (156)
T 1k2e_A           66 ENAVERPMPLVILEEVV-KYPEE-THIHFDLIYLVKR------VGGDLKNGEWIDVREIDR-----------IETFPNVR  126 (156)
T ss_dssp             SSEEECCCCSEEEEEEE-ECSSC-EEEEEEEEEEEEE------EEECCCSCEEEEGGGGGG-----------SCBSTTHH
T ss_pred             cccccccccceeeeeee-cCCCC-ceEEEEEEEEEEe------cCCcEeeeEEeCHHHHhc-----------CCCChHHH
Confidence                      0000011 11111 1122444555542      235789999999999874           25778888


Q ss_pred             HHHHHHHHHHHh
Q 029829          156 LVVDNFLFKWWD  167 (187)
Q Consensus       156 ~~~~~~l~~~~~  167 (187)
                      .+++.++.....
T Consensus       127 ~~l~~~~~~l~~  138 (156)
T 1k2e_A          127 KVVSLALSTLYR  138 (156)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            888888665443

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.73  E-value=2.8e-18  Score=129.77  Aligned_cols=110  Identities=11%  Similarity=0.062  Sum_probs=78.7

Q ss_pred             CCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCe
Q 029829            4 CVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF   83 (187)
Q Consensus         4 ~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l   83 (187)
                      .+|.+++++|++ +|+|||+||       +|.|.+| ||++++||+         +.+||+||+.||||+.+...     
T Consensus        17 ~~~~~~~~ii~~-~~~vLl~~r-------~~~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~~-----   73 (154)
T 2pqv_A           17 VFGVRATALIVQ-NHKLLVTKD-------KGKYYTI-GGAIQVNES---------TEDAVVREVKEELGVKAQAG-----   73 (154)
T ss_dssp             EEEEEEEECCEE-TTEEEEEEE-------TTEEECE-EEECBTTCC---------HHHHHHHHHHHHHCCCEEEE-----
T ss_pred             eEeEEEEEEEEE-CCEEEEEec-------CCeEECc-ccCcCCCCC---------HHHHHHHHHHHHhCCeeeec-----
Confidence            456677888876 689999998       6899986 799999999         89999999999999998743     


Q ss_pred             eeeeEEEEEccCCCCcceeEEEEEEEEecC-CcCC--CCccccceEEEecHHHHHHH
Q 029829           84 TPLGRILYKAPSDGKWGEHELDYLLFIVRD-VSVN--PNPDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        84 ~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~-~~~~--~~~~Ev~~~~Wv~~~el~~~  137 (187)
                      .+++.+.+..+.. +...+.+.++|.+... ....  ..++|+.+++|++++++.++
T Consensus        74 ~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~  129 (154)
T 2pqv_A           74 QLAFVVENRFEVD-GVSYHNIEFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQNI  129 (154)
T ss_dssp             EEEEEEEEEEEET-TEEEEEEEEEEEEEESSCCCSEEEETTEEEEEEEEEGGGGGGS
T ss_pred             eEEEEEeeeecCC-CCcceEEEEEEEEEecCCCCcccCCCCceeeEEEeEHHHHhhc
Confidence            3344444333322 2222445567777643 2221  23567999999999999864

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.73  E-value=1.9e-17  Score=130.57  Aligned_cols=124  Identities=11%  Similarity=0.107  Sum_probs=87.6

Q ss_pred             ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829            6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      .+++.+++++ +|+|||+||.     .+|.|.+| ||++++||+         +.+||+||+.||||+.+...     .+
T Consensus         4 ~~v~~~vi~~-~~~vLL~~r~-----~~g~W~lP-GG~ve~gEs---------~~~aa~REl~EEtGl~~~~~-----~~   62 (188)
T 3fk9_A            4 QRVTNCIVVD-HDQVLLLQKP-----RRGWWVAP-GGKMEAGES---------ILETVKREYWEETGITVKNP-----EL   62 (188)
T ss_dssp             CEEEEEEEEE-TTEEEEEECT-----TTCCEECC-EEECCTTCC---------HHHHHHHHHHHHHSCEESSC-----EE
T ss_pred             eEEEEEEEEE-CCEEEEEEeC-----CCCeEECC-eecccCCCC---------HHHHHHHHHHHHHCCCCCCc-----eE
Confidence            4566777766 6899999984     37999998 799999999         89999999999999998753     34


Q ss_pred             eeEEEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 029829           86 LGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL  162 (187)
Q Consensus        86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l  162 (187)
                      ++.+.+..........+...++|.+.. ...+.++ .|..+++|++++++.++           .+.|..+.++..++
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~f~a~~~~~~~~~~-~e~~~~~W~~~~el~~~-----------~l~~~~~~~l~~~l  128 (188)
T 3fk9_A           63 KGIFSMVIFDEGKIVSEWMLFTFKATEHEGEMLKQ-SPEGKLEWKKKDEVLEL-----------PMAAGDKWIFKHVL  128 (188)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEEESCEESCCCSE-ETTEEEEEEEGGGGGGS-----------CCCHHHHHHHHHHT
T ss_pred             EEEEEEEecCCCcceEEEEEEEEEEECCCCCCcCC-CCCEeEEEEEHHHhhhC-----------CCCHHHHHHHHHHH
Confidence            566555543322221122557777754 3333333 45579999999998643           56677777777664

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.72  E-value=1.2e-16  Score=128.07  Aligned_cols=116  Identities=17%  Similarity=0.142  Sum_probs=81.9

Q ss_pred             ceEEEEEEEe-CCCeEEEEE--ecCCCC--CCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCC
Q 029829            6 PNIFSILGFV-SYSVMSGQQ--RSGTKV--TFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV   80 (187)
Q Consensus         6 h~av~v~i~~-~~g~vLL~r--Rs~~k~--~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~   80 (187)
                      +.+|+|++++ .+|+|||.+  |.....  ..++.|++| ||++++||+         +.+||+||+.||||+.+..   
T Consensus        57 ~~av~vl~~~~~~~~vLLvrq~R~~~~~~~~~~~~welP-gG~ve~gE~---------~~~aA~REl~EEtGl~~~~---  123 (209)
T 1g0s_A           57 GHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMV-AGMIEEGES---------VEDVARREAIEEAGLIVKR---  123 (209)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECE-EEECCTTCC---------HHHHHHHHHHHHHCCCCCC---
T ss_pred             CCEEEEEEEECCCCEEEEEEeecccCCCCCCCCeEEEeC-cccCCCCcC---------HHHHHHHHHHHHcCcccCc---
Confidence            3589999999 568998854  543221  136889987 799999999         8999999999999998863   


Q ss_pred             CCeeeeeEEEEEccCCCCcceeEEEEEEEEecCC----c--CCCCccccceEEEecHHHHHHHHHhc
Q 029829           81 DEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDV----S--VNPNPDEVAEYKYVNREQLKELLRKA  141 (187)
Q Consensus        81 ~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~----~--~~~~~~Ev~~~~Wv~~~el~~~l~~~  141 (187)
                        +.+++.+ |..+   +.. .+.+++|++..+.    .  ...+++|+.++.|++++++.+++..+
T Consensus       124 --~~~l~~~-~~~~---g~~-~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~~~i~~g  183 (209)
T 1g0s_A          124 --TKPVLSF-LASP---GGT-SERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEG  183 (209)
T ss_dssp             --EEEEEEE-ESCT---TTB-CCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHHHHTT
T ss_pred             --EEEeEEE-ecCC---Ccc-CcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHHHHHHcC
Confidence              4567664 3322   222 3466777776421    1  23567889999999999999999976

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.72  E-value=5.8e-18  Score=135.19  Aligned_cols=123  Identities=9%  Similarity=0.034  Sum_probs=84.5

Q ss_pred             ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829            6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      +.+|.++|++ +|+|||+||+.     +|.|++| ||++++||+         +.+||+||+.||||+.+...     ..
T Consensus        68 ~~~v~~vv~~-~~~vLLv~r~~-----~g~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~v~~~-----~~  126 (205)
T 3q1p_A           68 KVDIRAVVFQ-NEKLLFVKEKS-----DGKWALP-GGWADVGYT---------PTEVAAKEVFEETGYEVDHF-----KL  126 (205)
T ss_dssp             EEEEEEEEEE-TTEEEEEEC--------CCEECS-EEECCTTCC---------HHHHHHHHHHHHHSEEEEEE-----EE
T ss_pred             cceEEEEEEE-CCEEEEEEEcC-----CCcEECC-cCccCCCCC---------HHHHHHHHHHHHHCCccccc-----eE
Confidence            3467778887 78999999862     6899997 799999999         89999999999999998743     34


Q ss_pred             eeEEEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 029829           86 LGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF  161 (187)
Q Consensus        86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~  161 (187)
                      ++.+.+..........+.+.++|.+.. +..+.++ +|+.+++|++++++.++           .+.|..+.++..+
T Consensus       127 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~E~~~~~w~~~~el~~l-----------~~~~~~~~~i~~~  191 (205)
T 3q1p_A          127 LAIFDKEKHQPSPSATHVYKIFIGCEIIGGEKKTS-IETEEVEFFGENELPNL-----------SIARNTEDQIKEM  191 (205)
T ss_dssp             EEEEEHHHHSCCCCSSCEEEEEEEEEEEEECCCCC-TTSCCEEEECTTSCCCB-----------CTTTCCHHHHHHH
T ss_pred             EEEEeccccCCCCCCceEEEEEEEEEecCCccCCC-CcceEEEEEeHHHhhhc-----------CCCccHHHHHHHH
Confidence            554332221111122244556666654 3445555 89999999999998753           4555556655555

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.71  E-value=7.7e-17  Score=126.79  Aligned_cols=121  Identities=12%  Similarity=0.012  Sum_probs=86.2

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829            8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG   87 (187)
Q Consensus         8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~   87 (187)
                      ++++++++ +|+|||+||....  .+|.|++| ||++++||+         +.+||+||+.||||+.+...     ..++
T Consensus        42 ~v~~ii~~-~~~vLL~~r~~~~--~~g~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~-----~~~~  103 (189)
T 3cng_A           42 IVGCIPEW-ENKVLLCKRAIAP--YRGKWTLP-AGFMENNET---------LVQGAARETLEEANARVEIR-----ELYA  103 (189)
T ss_dssp             EEEEEEEE-TTEEEEEEESSSS--STTCEECS-EEECCTTCC---------HHHHHHHHHHHHHCCCEEEE-----EEEE
T ss_pred             EEEEEEEe-CCEEEEEEccCCC--CCCeEECc-eeeccCCCC---------HHHHHHHHHHHHHCCccccc-----eeEE
Confidence            67777777 7899999998653  48999997 799999999         89999999999999987643     2333


Q ss_pred             EEEEEccCCCCcceeEEEEEEEEecC-CcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHH
Q 029829           88 RILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK  164 (187)
Q Consensus        88 ~~~y~~~~~~~~~e~e~~~vf~~~~~-~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l~~  164 (187)
                      .  |..+..     +...++|.+... ..+. ..+|+.+++|++++++...          ....|..+.++..|+..
T Consensus       104 ~--~~~~~~-----~~~~~~f~~~~~~~~~~-~~~E~~~~~W~~~~el~~~----------~l~~~~~~~~l~~~l~~  163 (189)
T 3cng_A          104 V--YSLPHI-----SQVYMLFRAKLLDLDFF-PGIESLEVRLFGEQEIPWN----------DIAFRVIHDPLKRYMEE  163 (189)
T ss_dssp             E--EEEGGG-----TEEEEEEEEEECCSCCC-CCTTEEEEEEECTTTCCGG----------GBSCHHHHHHHHHHHHH
T ss_pred             E--EecCCC-----cEEEEEEEEEeCCCccC-CCccceeEEEECHHHcCcc----------cccChHHHHHHHHHHHh
Confidence            3  332221     345677777653 3333 3579999999999998621          13356666777766543

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.71  E-value=1.3e-17  Score=133.21  Aligned_cols=123  Identities=13%  Similarity=0.067  Sum_probs=85.3

Q ss_pred             ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829            6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      +.+|.++|+++ |+|||+||+      +|.|++| ||++++||+         +.+||+||+.||||+.+...     ..
T Consensus        70 ~~~v~~vv~~~-~~vLLvrr~------~g~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~-----~~  127 (206)
T 3o8s_A           70 KLDTRAAIFQE-DKILLVQEN------DGLWSLP-GGWCDVDQS---------VKDNVVKEVKEEAGLDVEAQ-----RV  127 (206)
T ss_dssp             EEEEEEEEEET-TEEEEEECT------TSCEECS-EEECCTTSC---------HHHHHHHHHHHHHCEEEEEE-----EE
T ss_pred             CccEEEEEEEC-CEEEEEEec------CCeEECC-eeccCCCCC---------HHHHHHHHHHHHHCCcceee-----eE
Confidence            35677778774 899999987      6899987 699999999         89999999999999988643     34


Q ss_pred             eeEEEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 029829           86 LGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL  162 (187)
Q Consensus        86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l  162 (187)
                      ++.+.+..........+.+.++|.+.. ...+.++ +|+.+++|++++++.++           .+.|.++.++..++
T Consensus       128 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~E~~~~~w~~~~el~~l-----------~~~~~~~~~l~~~~  193 (206)
T 3o8s_A          128 VAILDKHKNNPAKSAHRVTKVFILCRLLGGEFQPN-SETVASGFFSLDDLPPL-----------YLGKNTAEQLALCL  193 (206)
T ss_dssp             EEEEEHHHHCC-----CEEEEEEEEEEEEECCCCC-SSCSEEEEECTTSCCCB-----------CTTTCCHHHHHHHH
T ss_pred             EEEEeccccCCCCCCceEEEEEEEEEecCCeecCC-CCceEEEEEeHHHhhhc-----------cCCCchHHHHHHHH
Confidence            554432211111112233445566654 3444555 89999999999998753           45666677666663

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.70  E-value=4.1e-17  Score=133.71  Aligned_cols=137  Identities=11%  Similarity=0.009  Sum_probs=95.3

Q ss_pred             ceEEEEEEE---eCCCeEEEEEecCCCCCCCCceeeccccCCCC--CCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCC
Q 029829            6 PNIFSILGF---VSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLY--RESELIEENALGVRNAAQRKLLDELGICAEDVPV   80 (187)
Q Consensus         6 h~av~v~i~---~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~--gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~   80 (187)
                      +.+|.++|+   +.+++|||++|+.  ..++|.|.+| ||++++  ||+         +.+||+||+.||||+.+..   
T Consensus        22 ~v~v~~vi~~~~~~~~~vLLv~R~~--~~~~g~W~lP-GG~ve~~~gEs---------~~~AA~REl~EEtGl~~~~---   86 (240)
T 3gz5_A           22 LLTVDAVLFTYHDQQLKVLLVQRSN--HPFLGLWGLP-GGFIDETCDES---------LEQTVLRKLAEKTAVVPPY---   86 (240)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEECCS--SSSTTCEECS-EEECCTTTCSB---------HHHHHHHHHHHHHSSCCSE---
T ss_pred             ccEEEEEEEEEeCCCcEEEEEECcC--CCCCCCEECC-ccccCCCCCcC---------HHHHHHHHHHHHHCCCCCc---
Confidence            457777777   3446999999984  3578999997 799999  999         8999999999999998864   


Q ss_pred             CCeeeeeEEEEEccCCCCcceeEEEEEEEEecC-CcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHH
Q 029829           81 DEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVD  159 (187)
Q Consensus        81 ~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~-~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~  159 (187)
                        +..++.+.+......+   +.+..+|++... .....+.+|+.+++|++++++..           ..+....+.++.
T Consensus        87 --~~~l~~~~~~~r~~~~---~~~~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el~~-----------~~l~~dh~~il~  150 (240)
T 3gz5_A           87 --IEQLCTVGNNSRDARG---WSVTVCYTALMSYQACQIQIASVSDVKWWPLADVLQ-----------MPLAFDHLQLIE  150 (240)
T ss_dssp             --EEEEEEEEESSSSTTS---CEEEEEEEEECCHHHHHHHHTTCTTEEEEEHHHHTT-----------SCCSTTHHHHHH
T ss_pred             --eeeEEEeCCCccCCCc---eEEEEEEEEEecccccCCCCCcccceEEecHHHccc-----------CCcchhHHHHHH
Confidence              3446654443222222   345566666543 22233567999999999999852           245555677777


Q ss_pred             HHHHHHHhHhcccc
Q 029829          160 NFLFKWWDHLEKGT  173 (187)
Q Consensus       160 ~~l~~~~~~~~~~~  173 (187)
                      ..+.....+++-..
T Consensus       151 ~a~~rlr~kl~y~~  164 (240)
T 3gz5_A          151 QARERLTQKALYSL  164 (240)
T ss_dssp             HHHHHHHHHHHHCS
T ss_pred             HHHHHHHHhcccCc
Confidence            77766666665544

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.70  E-value=8.1e-17  Score=124.51  Aligned_cols=113  Identities=11%  Similarity=0.010  Sum_probs=78.6

Q ss_pred             EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829            8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG   87 (187)
Q Consensus         8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~   87 (187)
                      .+++++++.+|++||.+|+      +|.|++| ||++++||+         +.+||+||+.||||+.+...     ..++
T Consensus        17 ~~~~~ii~~~~~vLL~~r~------~g~w~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~-----~~l~   75 (163)
T 3f13_A           17 RRATAIIEMPDGVLVTASR------GGRYNLP-GGKANRGEL---------RSQALIREIREETGLRINSM-----LYLF   75 (163)
T ss_dssp             EEEEEECEETTEEEEEECC---------BBCS-EEECCTTCC---------HHHHHHHHHHHHHCCCCCEE-----EEEE
T ss_pred             EEEEEEEEeCCEEEEEEEC------CCeEECC-ceeCCCCCC---------HHHHHHHHHHHHHCccccee-----EEEE
Confidence            3344444456889998885      5889987 799999999         89999999999999998643     3454


Q ss_pred             EEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q 029829           88 RILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF  163 (187)
Q Consensus        88 ~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l~  163 (187)
                      .  |..+.       ...++|++..++.+.++ +|+.+++|++.+. .           +..+.|..+.++..|+.
T Consensus        76 ~--~~~~~-------~~~~~f~~~~~~~~~~~-~E~~~~~W~~~~~-~-----------~~~l~~~~~~il~~~~~  129 (163)
T 3f13_A           76 D--HITPF-------NAHKVYLCIAQGQPKPQ-NEIERIALVSSPD-T-----------DMDLFVEGRAILRRYAR  129 (163)
T ss_dssp             E--EECSS-------EEEEEEEEEC-CCCCCC-TTCCEEEEESSTT-C-----------SSCBCHHHHHHHHHHHH
T ss_pred             E--EecCC-------eEEEEEEEEECCcCccC-CCceEEEEECccc-c-----------cCCCCHHHHHHHHHHHH
Confidence            3  33221       35567777666666666 4999999999332 1           24788888888887754

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.70  E-value=1.3e-16  Score=127.43  Aligned_cols=114  Identities=11%  Similarity=0.054  Sum_probs=79.4

Q ss_pred             eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCC-CCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829            7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPL-YRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve-~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      .+|++++++.+|++||+||.... .++|.|++| ||+++ +||+         +.+||+||+.||||+.+...     .+
T Consensus        44 ~av~v~i~~~~~~vLLvrr~r~~-~~~~~w~lP-gG~ve~~gEs---------~~~aa~REl~EEtGl~~~~~-----~~  107 (207)
T 1mk1_A           44 GAVAIVAMDDNGNIPMVYQYRHT-YGRRLWELP-AGLLDVAGEP---------PHLTAARELREEVGLQASTW-----QV  107 (207)
T ss_dssp             CEEEEEECCTTSEEEEEEEEETT-TTEEEEECC-EEECCSTTCC---------HHHHHHHHHHHHHCEEEEEE-----EE
T ss_pred             CEEEEEEEcCCCEEEEEEeecCC-CCCcEEEeC-CccccCCCCC---------HHHHHHHHHHHHHCCccccc-----EE
Confidence            48888899989999998876443 468999997 79999 9999         89999999999999988643     44


Q ss_pred             eeEEEEEccCCCCcceeEEEEEEEEec-CCcC---CCCccccceEEEecHHHHHHHHHhc
Q 029829           86 LGRILYKAPSDGKWGEHELDYLLFIVR-DVSV---NPNPDEVAEYKYVNREQLKELLRKA  141 (187)
Q Consensus        86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~---~~~~~Ev~~~~Wv~~~el~~~l~~~  141 (187)
                      ++.+ |..+   +.. .+.+++|++.. ....   ..+++|+.++.|++++++.+++..+
T Consensus       108 l~~~-~~~~---~~~-~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~  162 (207)
T 1mk1_A          108 LVDL-DTAP---GFS-DESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRVLRG  162 (207)
T ss_dssp             EEEE-CSCT---TTB-CCCEEEEEEEEEEECCC----------CEEEEEHHHHHHHHHTT
T ss_pred             EEEE-EcCC---Ccc-ccEEEEEEEEccccCCCCCCCCCCceEEEEEEEHHHHHHHHHcC
Confidence            6554 3222   222 23456666653 2111   2557899999999999999999875

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.70  E-value=1.5e-16  Score=134.80  Aligned_cols=134  Identities=10%  Similarity=0.013  Sum_probs=87.0

Q ss_pred             CceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCee
Q 029829            5 VPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT   84 (187)
Q Consensus         5 ~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~   84 (187)
                      .+.+|++++++ +|+|||+||+..  ..+|.|++| ||++++||+         +.+||+||+.||||+.+....+.. .
T Consensus       202 ~~~~v~~vi~~-~~~vLL~~r~~~--~~~g~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~~~~~~-~  267 (341)
T 2qjo_A          202 TFITTDAVVVQ-AGHVLMVRRQAK--PGLGLIALP-GGFIKQNET---------LVEGMLRELKEETRLKVPLPVLRG-S  267 (341)
T ss_dssp             CEEEEEEEEEE-TTEEEEEECCSS--SSTTCEECS-EEECCTTSC---------HHHHHHHHHHHHHCCSSCHHHHHH-T
T ss_pred             CceEEEEEEEe-CCEEEEEEecCC--CCCCeEECC-CCcCCCCCC---------HHHHHHHHHhhhhCCccccccccc-c
Confidence            35677888875 689999999754  358999997 799999999         899999999999999987432100 0


Q ss_pred             eeeEEEEEccCCCCcceeEEEEEEEEecC-Cc--CCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 029829           85 PLGRILYKAPSDGKWGEHELDYLLFIVRD-VS--VNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF  161 (187)
Q Consensus        85 ~~~~~~y~~~~~~~~~e~e~~~vf~~~~~-~~--~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~  161 (187)
                      ......|..+...... +.+.++|.+... ..  ...+++|+.+++|++++++.++         +..+.|..+.++..+
T Consensus       268 ~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~---------~~~~~~~~~~il~~~  337 (341)
T 2qjo_A          268 IVDSHVFDAPGRSLRG-RTITHAYFIQLPGGELPAVKGGDDAQKAWWMSLADLYAQ---------EEQIYEDHFQIIQHF  337 (341)
T ss_dssp             EEEEEEECCTTSCTTS-CEEEEEEEEECCSSSCCCCC------CEEEEEHHHHHHT---------GGGBCTTHHHHHHHH
T ss_pred             ccceEEEeCCCCCCCC-cEEEEEEEEEecCCCcCccCCCCceeeEEEeeHHHHhhh---------hhhhchHHHHHHHHH
Confidence            0112234433221111 345566666542 22  1245689999999999999874         135788888888877


Q ss_pred             H
Q 029829          162 L  162 (187)
Q Consensus       162 l  162 (187)
                      +
T Consensus       338 ~  338 (341)
T 2qjo_A          338 V  338 (341)
T ss_dssp             C
T ss_pred             H
Confidence            4

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.70  E-value=3.8e-17  Score=129.77  Aligned_cols=111  Identities=13%  Similarity=0.046  Sum_probs=75.9

Q ss_pred             CCceEEEEEEE-eCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCC
Q 029829            4 CVPNIFSILGF-VSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE   82 (187)
Q Consensus         4 ~~h~av~v~i~-~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~   82 (187)
                      ..++++++++. +.+|+|||+||..    .||.|++| ||++++||+         +++||+||++||||+.+...    
T Consensus        39 ~~~~~~~vi~~~~~~~~vLLv~r~~----~~g~W~lP-gG~ve~gEt---------~~eaa~REl~EEtGl~~~~~----  100 (194)
T 2fvv_A           39 YKKRAACLCFRSESEEEVLLVSSSR----HPDRWIVP-GGGMEPEEE---------PSVAAVREVCEEAGVKGTLG----  100 (194)
T ss_dssp             CEEEEEEEEESSTTCCEEEEEECSS----CTTSEECS-EEECCTTCC---------HHHHHHHHHHHHHCEEEEEE----
T ss_pred             ccccEEEEEEEECCCCEEEEEEEeC----CCCcEECC-CCcCCCCcC---------HHHHHHHHHHHHhCCccccc----
Confidence            34455555552 4568999999864    37999997 799999999         89999999999999988643    


Q ss_pred             eeeeeEEEEEccCCCCcceeEEEEEEEEecCCcC---CCCccccceEEEecHHHHHHHHHh
Q 029829           83 FTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSV---NPNPDEVAEYKYVNREQLKELLRK  140 (187)
Q Consensus        83 l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~---~~~~~Ev~~~~Wv~~~el~~~l~~  140 (187)
                       .+++.+.+  ..  .   ....++|.+......   ..+.++..+++|++++++.+++..
T Consensus       101 -~~l~~~~~--~~--~---~~~~~~f~~~~~~~~~~~~~~~e~~~~~~W~~~~el~~~l~~  153 (194)
T 2fvv_A          101 -RLVGIFEN--QE--R---KHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQY  153 (194)
T ss_dssp             -EEEEEEEE--TT--T---TEEEEEEEEEEEEECSSCHHHHHHCCCEEEEEHHHHHHHHTT
T ss_pred             -eEEEEEEc--CC--C---ceEEEEEEEEEccccCCCCCcccccceEEEEEHHHHHHHHhc
Confidence             44665442  11  1   123455555432211   111234578999999999998764

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.69  E-value=3.9e-17  Score=132.65  Aligned_cols=111  Identities=16%  Similarity=0.079  Sum_probs=79.2

Q ss_pred             ceEEEEEEE---eCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCC
Q 029829            6 PNIFSILGF---VSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE   82 (187)
Q Consensus         6 h~av~v~i~---~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~   82 (187)
                      +.+|+++|+   +.+++|||++|+..  .++|.|++| ||++++||+         +.+||+||+.||||+.+...    
T Consensus        13 ~v~v~~vi~~~~~~~~~vLLv~r~~~--~~~g~w~lP-GG~ve~gEs---------~~~Aa~REl~EEtGl~~~~~----   76 (226)
T 2fb1_A           13 YLGIDCIIFGFNEGEISLLLLKRNFE--PAMGEWSLM-GGFVQKDES---------VDDAAKRVLAELTGLENVYM----   76 (226)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEECSSS--SSTTCEECE-EEECCTTSC---------HHHHHHHHHHHHHCCCSCEE----
T ss_pred             eEEEEEEEEEEeCCCCEEEEEECcCC--CCCCCEECC-eeccCCCCC---------HHHHHHHHHHHHHCCCCCce----
Confidence            467888887   45679999999763  568999997 799999999         89999999999999988642    


Q ss_pred             eeeeeEEEEEccCCCCcceeEEEEEEEEecC-CcCCCCccccceEEEecHHHHHH
Q 029829           83 FTPLGRILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKE  136 (187)
Q Consensus        83 l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~-~~~~~~~~Ev~~~~Wv~~~el~~  136 (187)
                       ..++.+  ..+... ...+.+..+|.+... .....+.+|+.+++|++++++.+
T Consensus        77 -~~l~~~--~~~~r~-~~~~~v~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el~~  127 (226)
T 2fb1_A           77 -EQVGAF--GAIDRD-PGERVVSIAYYALININEYDRELVQKHNAYWVNINELPA  127 (226)
T ss_dssp             -EEEEEE--CCTTSS-SSSCEEEEEEEEECCTTSSCHHHHHHTTEEEEETTSCCC
T ss_pred             -EEEEEe--CCCCcC-CCceEEEEEEEEEecCcccccCCccccceEEEEHHHhhh
Confidence             345543  222211 111345556666543 22333457999999999998763

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.69  E-value=2.2e-16  Score=134.54  Aligned_cols=135  Identities=13%  Similarity=0.117  Sum_probs=93.3

Q ss_pred             CceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCee
Q 029829            5 VPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT   84 (187)
Q Consensus         5 ~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~   84 (187)
                      .|.+++++|+ .+|+|||+||....  .+|.|++| ||++++||+         +++||+||+.||||+.+....+. ..
T Consensus       207 ~~~~v~~vv~-~~~~vLL~~r~~~~--~~g~w~lP-gG~ve~gEt---------~~~aa~REl~EEtGl~v~~~~~~-~~  272 (352)
T 2qjt_B          207 NFVTVDALVI-VNDHILMVQRKAHP--GKDLWALP-GGFLECDET---------IAQAIIRELFEETNINLTHEQLA-IA  272 (352)
T ss_dssp             EEEEEEEEEE-ETTEEEEEEESSSS--STTCEECS-EEECCTTSC---------HHHHHHHHHHHHHCCSCCHHHHH-HH
T ss_pred             CceEEEEEEE-ECCEEEEEEEcCCC--CCCeEECC-CCcCCCCCC---------HHHHHHHHHHHhhCCCcccchhc-ce
Confidence            3567788887 46899999997643  58999997 799999999         89999999999999998643210 01


Q ss_pred             eeeEEEEEccCCCCcceeEEEEEEEEec-CCc--CC-CCccccceEEEecH-HHHHHHHHhccCCCCCcccChhHHHHHH
Q 029829           85 PLGRILYKAPSDGKWGEHELDYLLFIVR-DVS--VN-PNPDEVAEYKYVNR-EQLKELLRKADAGEEGLKLSPWFRLVVD  159 (187)
Q Consensus        85 ~~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~--~~-~~~~Ev~~~~Wv~~-~el~~~l~~~~~~~~~~~~~p~~~~~~~  159 (187)
                      +.+...|..+...... +...++|++.. ...  +. .+.+|+.+++|+++ +++.++         +..+.|..+.++.
T Consensus       273 ~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~~el~~~---------~~~~~~~~~~il~  342 (352)
T 2qjt_B          273 KRCEKVFDYPDRSVRG-RTISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKNI---------CDRMLEDHYQIIT  342 (352)
T ss_dssp             EEEEEEECCTTSCTTS-EEEEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHHT---------TTSBSTTHHHHHH
T ss_pred             eeeeEEecCCCCCCCc-cEEEEEEEEEEeCCCCCCccCCCccceEEEEecHHHHHHhh---------hhhhChhHHHHHH
Confidence            1222334443322111 33455555543 222  22 34689999999999 999875         2368888999888


Q ss_pred             HHHH
Q 029829          160 NFLF  163 (187)
Q Consensus       160 ~~l~  163 (187)
                      .++.
T Consensus       343 ~~~~  346 (352)
T 2qjt_B          343 ILLE  346 (352)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8854

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.69  E-value=1.5e-16  Score=132.74  Aligned_cols=103  Identities=16%  Similarity=0.159  Sum_probs=78.3

Q ss_pred             EEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeE
Q 029829            9 FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGR   88 (187)
Q Consensus         9 v~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~   88 (187)
                      +.+++++.+|+|||+||+...   +|+|++| ||++++||+         +++||+||+.||||+.+..     +.+++.
T Consensus       142 ~viv~v~~~~~vLL~rr~~~~---~g~w~lP-gG~vE~GEt---------~eeAa~REv~EEtGl~v~~-----~~~~~~  203 (269)
T 1vk6_A          142 CIIVAIRRDDSILLAQHTRHR---NGVHTVL-AGFVEVGET---------LEQAVAREVMEESGIKVKN-----LRYVTS  203 (269)
T ss_dssp             EEEEEEEETTEEEEEEETTTC---SSCCBCE-EEECCTTCC---------HHHHHHHHHHHHHCCEEEE-----EEEEEE
T ss_pred             EEEEEEEeCCEEEEEEecCCC---CCcEECC-cCcCCCCCC---------HHHHHHHHHHHHhCceeee-----EEEEEE
Confidence            334445567899999997543   6999996 799999999         8999999999999999874     356766


Q ss_pred             EEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHH
Q 029829           89 ILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKE  136 (187)
Q Consensus        89 ~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~  136 (187)
                      +.+..+       +...++|.+.. +..+.++.+|+.+++|++++++..
T Consensus       204 ~~~~~~-------~~~~~~f~a~~~~~~~~~~~~E~~~~~W~~~~el~~  245 (269)
T 1vk6_A          204 QPWPFP-------QSLMTAFMAEYDSGDIVIDPKELLEANWYRYDDLPL  245 (269)
T ss_dssp             EEEETT-------EEEEEEEEEEEEECCCCCCTTTEEEEEEEETTSCCS
T ss_pred             EecCCC-------CEEEEEEEEEECCCCcCCCCcceEEEEEEEHHHhhh
Confidence            554432       23556666654 345667778999999999999864

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.68  E-value=2.9e-16  Score=119.04  Aligned_cols=121  Identities=12%  Similarity=0.057  Sum_probs=82.7

Q ss_pred             EEEEEeC---CCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHH-HHHHHHHHHHhC-CCccCCCCCCee
Q 029829           10 SILGFVS---YSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVR-NAAQRKLLDELG-ICAEDVPVDEFT   84 (187)
Q Consensus        10 ~v~i~~~---~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~-~Aa~REl~EE~G-l~~~~~~~~~l~   84 (187)
                      .++|.+.   +|+|||+||+.. ..++|+|++| ||++++||+         +. +||+||+.|||| +.+...     .
T Consensus        23 ~~vi~~~~~~~~~vLl~~R~~~-~~~~g~w~~P-gG~~e~gE~---------~~~~a~~REl~EE~g~l~~~~~-----~   86 (155)
T 1x51_A           23 TCVLEQPGALGAQILLVQRPNS-GLLAGLWEFP-SVTWEPSEQ---------LQRKALLQELQRWAGPLPATHL-----R   86 (155)
T ss_dssp             EEEEEEECSSSEEEEEEECCCC-STTCSCEECC-EEECCSSHH---------HHHHHHHHHHHHHSCCCCSTTC-----E
T ss_pred             EEEEEecCCCCCEEEEEECCCC-CCCCceecCC-ccccCCCCC---------HHHHHHHHHHHHHhCCcceeee-----e
Confidence            3444454   589999999865 3689999998 689999998         75 999999999999 776532     3


Q ss_pred             eeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q 029829           85 PLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF  163 (187)
Q Consensus        85 ~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l~  163 (187)
                      +++.+.+..+.  .   +...++|.+..... .++..|..+++|++++++.++           .+.+..+.+++.++.
T Consensus        87 ~l~~~~~~~~~--~---~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~~~~  148 (155)
T 1x51_A           87 HLGEVVHTFSH--I---KLTYQVYGLALEGQ-TPVTTVPPGARWLTQEEFHTA-----------AVSTAMKKVFRVYQG  148 (155)
T ss_dssp             ECCCBCCBCSS--C---EEEEEEEEEECSSC-CCCCCCCTTEEEEEHHHHHHS-----------CCCHHHHHHHHHHHH
T ss_pred             ecceEEEecCC--c---cEEEEEEEEEEcCC-CCCCCCCCccEEccHHHhhhc-----------CCCHHHHHHHHHHHh
Confidence            34443332211  1   22346676664321 133457889999999999863           467777777776643

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.68  E-value=1.9e-16  Score=125.93  Aligned_cols=113  Identities=19%  Similarity=0.094  Sum_probs=84.1

Q ss_pred             eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829            7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL   86 (187)
Q Consensus         7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~   86 (187)
                      .+|+|++++.+ +|||++|... ...+|.|++| ||++++||+         +.+||+||+.||||+.+..     +.++
T Consensus        50 ~av~vl~~~~~-~vLLvrq~r~-~~~~~~welP-gG~ve~gEs---------~~~aA~REl~EEtGl~~~~-----~~~l  112 (198)
T 1vhz_A           50 EAVMIVPIVDD-HLILIREYAV-GTESYELGFS-KGLIDPGES---------VYEAANRELKEEVGFGAND-----LTFL  112 (198)
T ss_dssp             CEEEEEEEETT-EEEEEEEEET-TTTEEEEECE-EEECCTTCC---------HHHHHHHHHHHHHSEEEEE-----EEEE
T ss_pred             CEEEEEEEECC-EEEEEEcccC-CCCCcEEEeC-cccCCCCcC---------HHHHHHHHHHHHHCCCcCc-----eEEE
Confidence            47888888876 9999876543 2468899997 799999999         8999999999999998864     3456


Q ss_pred             eEEEEEccCCCCcceeEEEEEEEEec--CCcCCCCccccceEEEecHHHHHHHHHhc
Q 029829           87 GRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELLRKA  141 (187)
Q Consensus        87 ~~~~y~~~~~~~~~e~e~~~vf~~~~--~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~  141 (187)
                      +.+.+. +   +.. .+.+++|++..  ......+++|+.++.|++++++.+++..+
T Consensus       113 ~~~~~~-~---~~~-~~~~~~f~a~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~  164 (198)
T 1vhz_A          113 KKLSMA-P---SYF-SSKMNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLEDP  164 (198)
T ss_dssp             EEEECC-T---TTC-CCEEEEEEEEEEEECCCCCCCSSCCCEEEEEGGGGGGGGGCT
T ss_pred             EEEeCC-C---Ccc-CcEEEEEEEEeCCcccCCCCCCceEEEEEEEHHHHHHHHHcC
Confidence            654322 1   111 33556676653  23345677899999999999999998865

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.68  E-value=2.8e-16  Score=127.31  Aligned_cols=119  Identities=9%  Similarity=-0.012  Sum_probs=80.5

Q ss_pred             CceEEEEEEEeC-CCeEEEEE--ecCCC----------------------------CCCCCceeeccccCCCC-CCChhh
Q 029829            5 VPNIFSILGFVS-YSVMSGQQ--RSGTK----------------------------VTFPLVWTNTCCSHPLY-RESELI   52 (187)
Q Consensus         5 ~h~av~v~i~~~-~g~vLL~r--Rs~~k----------------------------~~~pG~W~~~~gGhve~-gEs~~~   52 (187)
                      .|.+|+|++++. ++++||.|  |....                            ...++.|++| ||++++ ||+   
T Consensus        35 ~~~aV~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welP-gG~ve~~gEs---  110 (218)
T 3q91_A           35 THDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELC-AGLVDQPGLS---  110 (218)
T ss_dssp             CCCEEEEEEEEGGGTEEEEEEEECHHHHHHHTC-------------------------CCEEEECE-EEECCSSSCC---
T ss_pred             cCCeEEEEEEECCCCEEEEEEccccccccccccccccccccccccccccccccccccCCCeEEECC-cceeCCCCCC---
Confidence            367999999994 57888865  42210                            1127899997 799999 999   


Q ss_pred             hhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeEEEEEccCCCCcceeEEEEEEEEecC-------CcCCCCccccce
Q 029829           53 EENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD-------VSVNPNPDEVAE  125 (187)
Q Consensus        53 ~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~-------~~~~~~~~Ev~~  125 (187)
                            +.+||+||+.||||+.+...   .+.+++.+.. .+   +.. .+.+++|++...       ....++++|+.+
T Consensus       111 ------~~eaA~REl~EEtGl~~~~~---~l~~l~~~~~-~~---g~~-~~~~~~f~a~~~~~~~~~~~~~~~d~~E~~e  176 (218)
T 3q91_A          111 ------LEEVACKEAWEECGYHLAPS---DLRRVATYWS-GV---GLT-GSRQTMFYTEVTDAQRSGPGGGLVEEGELIE  176 (218)
T ss_dssp             ------HHHHHHHHHHHHHCBCCCGG---GCEEEEEEEE-C------C-CEEEEEEEEEECGGGBCC---------CCEE
T ss_pred             ------HHHHHHHHHHHHhCCccccC---ceEEEEEEec-CC---Ccc-ceEEEEEEEEECCcccccCCCCCCCCCcEEE
Confidence                  89999999999999998321   2456766422 21   122 345677777642       124567789999


Q ss_pred             EEEecHHHHHHHHHhc
Q 029829          126 YKYVNREQLKELLRKA  141 (187)
Q Consensus       126 ~~Wv~~~el~~~l~~~  141 (187)
                      +.|++++++.+++..+
T Consensus       177 v~wv~l~el~~~i~~g  192 (218)
T 3q91_A          177 VVHLPLEGAQAFADDP  192 (218)
T ss_dssp             EEEEEGGGHHHHHHCT
T ss_pred             EEEEEHHHHHHHHHcC
Confidence            9999999999999986

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.67  E-value=6.6e-16  Score=121.95  Aligned_cols=115  Identities=13%  Similarity=0.039  Sum_probs=81.3

Q ss_pred             CceEEEEEEEeC-CCeEEEEEecCCC----CC-CCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 029829            5 VPNIFSILGFVS-YSVMSGQQRSGTK----VT-FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV   78 (187)
Q Consensus         5 ~h~av~v~i~~~-~g~vLL~rRs~~k----~~-~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~   78 (187)
                      .|.+|++++++. +|++||.++....    .. .++.|++| ||+++ ||+         +.+||+||+.||||+.+.. 
T Consensus        44 ~~~av~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lP-gG~ve-gE~---------~~~aa~REl~EEtG~~~~~-  111 (191)
T 3o6z_A           44 RGNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESC-AGLLD-NDE---------PEVCIRKEAIEETGYEVGE-  111 (191)
T ss_dssp             CCCEEEEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECE-EEECC-SSC---------HHHHHHHHHHHHC-CCCSC-
T ss_pred             cCCEEEEEEEECCCCEEEEEEcCCccccccCCCCCeEEEec-ceEeC-CCC---------HHHHHHHHHHHHhCCccCc-
Confidence            456899999985 5899987754311    11 57899997 69999 999         8999999999999999864 


Q ss_pred             CCCCeeeeeEEEEEccCCCCcceeEEEEEEEEecCCc------CCCCccccceEEEecHHHHHHHHHhc
Q 029829           79 PVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVS------VNPNPDEVAEYKYVNREQLKELLRKA  141 (187)
Q Consensus        79 ~~~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~------~~~~~~Ev~~~~Wv~~~el~~~l~~~  141 (187)
                          +.+++.+ |..+   +.. .+..++|++.....      ..+ ++|+.+++|++++++.+++..+
T Consensus       112 ----~~~l~~~-~~~~---~~~-~~~~~~f~~~~~~~~~~~~~~~~-~~E~~~~~w~~~~el~~~~~~g  170 (191)
T 3o6z_A          112 ----VRKLFEL-YMSP---GGV-TELIHFFIAEYSDNQRANAGGGV-EDEAIEVLELPFSQALEMIKTG  170 (191)
T ss_dssp             ----EEEEEEE-ESCT---TTB-CCEEEEEEEECCTTCC---------CCSSEEEEEEHHHHHHHHHHS
T ss_pred             ----EEEEEEE-EeCC---Ccc-CcEEEEEEEEEcccccccCCCCC-CCcEEEEEEEEHHHHHHHHHcC
Confidence                3556653 2222   222 34567777764211      122 6899999999999999999986

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.63  E-value=8.2e-15  Score=119.86  Aligned_cols=148  Identities=11%  Similarity=0.054  Sum_probs=100.0

Q ss_pred             CCCceEEEEEEEeC-CC--eEEEEEecCCCCCCCCceeeccccCCCCCCChh-----------hhhhhhcHHHHHHHHHH
Q 029829            3 KCVPNIFSILGFVS-YS--VMSGQQRSGTKVTFPLVWTNTCCSHPLYRESEL-----------IEENALGVRNAAQRKLL   68 (187)
Q Consensus         3 g~~h~av~v~i~~~-~g--~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~-----------~~~~~~~~~~Aa~REl~   68 (187)
                      ..++.|+.|++.+. +|  +|||+||+.+...+||.|.+| ||+++++|++.           ..+.+..+..||+||+.
T Consensus         6 ~~r~aA~lill~~~~~g~~~vLl~~R~~~~~~~~g~~~fP-GG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~   84 (232)
T 3qsj_A            6 DIRKAATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFP-GGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETA   84 (232)
T ss_dssp             CEEEEEEEEEEEECGGGCEEEEEEEECTTCSSSTTCEECS-EEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHH
T ss_pred             CCcceEEEEEEEcCCCCCeEEEEEEccCCCCCCCCcEECC-ceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHH
Confidence            34455555556554 34  899999998877789999998 79999988620           11222346899999999


Q ss_pred             HHhCCCccCCC-------------------------------------CCCeeeeeEEEEEccCCCCcceeEEE-EEEEE
Q 029829           69 DELGICAEDVP-------------------------------------VDEFTPLGRILYKAPSDGKWGEHELD-YLLFI  110 (187)
Q Consensus        69 EE~Gl~~~~~~-------------------------------------~~~l~~~~~~~y~~~~~~~~~e~e~~-~vf~~  110 (187)
                      |||||.+....                                     ++.|.+..+  +..|..  .. +.++ ++|++
T Consensus        85 EE~Gl~l~~~~~~~~~~~~~~~~~~r~~l~~~~~~f~~~~~~~~l~~~~~~L~~~ar--WiTP~~--~~-rRfdT~FFla  159 (232)
T 3qsj_A           85 EEIGWLLAVRDGEGTKMDTPLAPDEQADLCKGGDALSAWLSARGLAFDLGLLRRIGR--FVTPPT--QP-VRFDTRFFLC  159 (232)
T ss_dssp             HHHSCCCSEECTTCCBCCSCCCHHHHHHHTTCTTHHHHHHHTTTCEEBGGGCEEEEE--EECCTT--SS-SEEEEEEEEE
T ss_pred             HHhCceeccccccCcccChhhHHHHHHHHHcCchhHHHHHHHCCCccChhhceeeEE--EcCCcC--Cc-eeEEEEEEEE
Confidence            99999764311                                     112333333  333332  12 3344 44555


Q ss_pred             ecCCc--CCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 029829          111 VRDVS--VNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF  161 (187)
Q Consensus       111 ~~~~~--~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~  161 (187)
                      ..+..  +..+.+|+.++.|++++++.+...++     .-.+.|....++..+
T Consensus       160 ~lpq~~~v~~d~~E~~~~~W~~p~eal~~~~~G-----~i~L~pPT~~~L~~L  207 (232)
T 3qsj_A          160 VGQHLGEPRLHGAELDAALWTPARDMLTRIQSG-----ELPAVRPTIAVLKAL  207 (232)
T ss_dssp             ECSSCCCCCCCSSSEEEEEEEEHHHHHHHHHTT-----SSCCCHHHHHHHHHH
T ss_pred             ECCCCCCCCCCCCceEEEEEEcHHHHHHHHHcC-----CceechhHHHHHHHH
Confidence            44432  25678999999999999999999886     357888888887765

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.63  E-value=1.6e-15  Score=126.46  Aligned_cols=151  Identities=13%  Similarity=0.088  Sum_probs=99.6

Q ss_pred             ceEEEEEEEe--C---CCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCC
Q 029829            6 PNIFSILGFV--S---YSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV   80 (187)
Q Consensus         6 h~av~v~i~~--~---~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~   80 (187)
                      +.+|.++|+.  .   +++|||++|+..  .++|.|++| ||++++||+         +.+||+||+.||||+.+.... 
T Consensus        39 ~v~v~~vv~~~~~~~~~~~VLLv~R~~~--p~~g~W~lP-GG~ve~gEs---------~~~AA~REl~EEtGl~v~~~~-  105 (273)
T 2fml_A           39 SLTVDMVLLCYNKEADQLKVLLIQRKGH--PFRNSWALP-GGFVNRNES---------TEDSVLRETKEETGVVISQEN-  105 (273)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEEECSS--SSTTCEECC-EEECCTTSC---------HHHHHHHHHHHHHCCCCCGGG-
T ss_pred             ceEEEEEEEEEcCCCCCcEEEEEEccCC--CCCCcEECC-ccCCCCCcC---------HHHHHHHHHHHHHCCCCCcCc-
Confidence            3467777764  2   348999999865  478999998 799999999         899999999999998765432 


Q ss_pred             CCeeeeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccC------------CCCCc
Q 029829           81 DEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADA------------GEEGL  148 (187)
Q Consensus        81 ~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~------------~~~~~  148 (187)
                        +..++.  |..+..+. ..+.+.++|.+..........+|+.+++|++++++.+.+..+..            .-...
T Consensus       106 --l~~l~~--~~~~~r~~-~~~~~~~~y~a~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~e~~~l~~~~~~~~~~~~~  180 (273)
T 2fml_A          106 --IEQLHS--FSRPDRDP-RGWVVTVSYLAFIGEEPLIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKD  180 (273)
T ss_dssp             --EEEEEE--ECCTTSST-TSSEEEEEEEEECCCCCCCCCTTEEEEEEEEEEEETTEEEEEETTEEEEEETTTCCBCSSS
T ss_pred             --EEEEEE--EcCCCCCC-CceEEEEEEEEEeCCCCCCCCcceeeEEEEEhhHhhhhhccccchhhhccccccccccCCC
Confidence              334444  33332111 11445666766653322345679999999999987655421100            00012


Q ss_pred             ccChhHHHHHHHHHHHHHhHhccccc
Q 029829          149 KLSPWFRLVVDNFLFKWWDHLEKGTL  174 (187)
Q Consensus       149 ~~~p~~~~~~~~~l~~~~~~~~~~~~  174 (187)
                      .+......++..++.+-..+++-+.+
T Consensus       181 ~LafdH~~Il~~al~rlr~kl~y~~i  206 (273)
T 2fml_A          181 TLAFDHSEIIIKAFNRVVDKMEHEPQ  206 (273)
T ss_dssp             CCSTTHHHHHHHHHHHHHHHTTTCCG
T ss_pred             cccccHHHHHHHHHHHHHHHhcCCcH
Confidence            45555677888888877777776654

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.62  E-value=2.3e-15  Score=129.72  Aligned_cols=121  Identities=16%  Similarity=0.142  Sum_probs=79.1

Q ss_pred             CeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeEEEEEccCCC
Q 029829           18 SVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDG   97 (187)
Q Consensus        18 g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~~~y~~~~~~   97 (187)
                      .+|||++|..     .|.|++| ||++++||+         +.+||+||++||||+.+...     .+++.+.|..+..+
T Consensus        38 ~~vLLv~r~~-----~g~W~lP-gG~ve~gEs---------~~~AA~REl~EEtGl~~~~~-----~~l~~~~~~~~~~g   97 (364)
T 3fjy_A           38 IEVCIVHRPK-----YDDWSWP-KGKLEQNET---------HRHAAVREIGEETGSPVKLG-----PYLCEVEYPLSEEG   97 (364)
T ss_dssp             EEEEEEEETT-----TTEEECC-EEECCTTCC---------HHHHHHHHHHHHHSCCEEEE-----EEEEEEC-------
T ss_pred             eEEEEEEcCC-----CCCEECC-cCCCCCCCC---------HHHHHHHHHHHHhCCeeeec-----cccceEEEeccCCC
Confidence            4899999843     3899997 699999999         89999999999999988643     34665555544321


Q ss_pred             Ccc--------eeEEEEEEEEecC-C------------cCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHH
Q 029829           98 KWG--------EHELDYLLFIVRD-V------------SVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRL  156 (187)
Q Consensus        98 ~~~--------e~e~~~vf~~~~~-~------------~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~  156 (187)
                      ...        .+...++|.+... .            ...++++|+.+++|++++++.+++           ..|..+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~-----------~~~~~r~  166 (364)
T 3fjy_A           98 KKTRHSHDCTADTKHTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKIL-----------SHSTDKD  166 (364)
T ss_dssp             --------------CEEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHC-----------SCHHHHH
T ss_pred             cccccccccccCceEEEEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHHHh-----------cchhhHH
Confidence            110        1234455555532 1            123566899999999999999763           3456677


Q ss_pred             HHHHHHHHHHhHhcccc
Q 029829          157 VVDNFLFKWWDHLEKGT  173 (187)
Q Consensus       157 ~~~~~l~~~~~~~~~~~  173 (187)
                      +++.+    .+.++.|.
T Consensus       167 il~~~----~~~l~~g~  179 (364)
T 3fjy_A          167 TLAVF----VDRVQEGA  179 (364)
T ss_dssp             HHHHH----HHHHHTTG
T ss_pred             HHHHH----HHHhccCC
Confidence            77777    44444443

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.62  E-value=9.5e-16  Score=127.87  Aligned_cols=109  Identities=12%  Similarity=0.027  Sum_probs=73.1

Q ss_pred             eEEEEEEEeC-CCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829            7 NIFSILGFVS-YSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         7 ~av~v~i~~~-~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      .++++++++. +|+|||+||..    .||.|++| ||++++||+         +.+||+||+.||||+.+..+..     
T Consensus       102 ~~v~avv~~~~~~~vLLv~r~~----~~g~W~lP-gG~ve~gEs---------~~eAA~REl~EEtGl~~~~l~~-----  162 (271)
T 2a6t_A          102 PVRGAIMLDMSMQQCVLVKGWK----ASSGWGFP-KGKIDKDES---------DVDCAIREVYEETGFDCSSRIN-----  162 (271)
T ss_dssp             CEEEEEEBCSSSSEEEEEEESS----TTCCCBCS-EEECCTTCC---------HHHHHHHHHHHHHCCCCTTTCC-----
T ss_pred             CeEEEEEEECCCCEEEEEEEeC----CCCeEECC-cccCCCCcC---------HHHHHHHHHHHHhCCCceeeee-----
Confidence            4678888886 48999999864    36999987 799999999         8999999999999999876321     


Q ss_pred             eeEEEEEccCCCCcceeEEEEEEEEec---CCcCCC-CccccceEEEecHHHHHHHHHh
Q 029829           86 LGRILYKAPSDGKWGEHELDYLLFIVR---DVSVNP-NPDEVAEYKYVNREQLKELLRK  140 (187)
Q Consensus        86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~---~~~~~~-~~~Ev~~~~Wv~~~el~~~l~~  140 (187)
                      +.  .|..+.   .. ...+++|++..   +....+ +.+|+.+++|++++++.++...
T Consensus       163 ~~--~~~~~~---~~-~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~  215 (271)
T 2a6t_A          163 PN--EFIDMT---IR-GQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKN  215 (271)
T ss_dssp             TT--CEEEEE---ET-TEEEEEEEECCCCTTCCCC------EEEEEEEEGGGSTTCC--
T ss_pred             ee--eeccCC---cC-CceEEEEEEEEecCcccCCCCCccceeEEEEEEHHHHHHHHhc
Confidence            21  122211   01 12445565543   122233 5689999999999999876443

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.60  E-value=2.7e-15  Score=120.16  Aligned_cols=114  Identities=12%  Similarity=0.041  Sum_probs=77.5

Q ss_pred             ceEEEEEEEeCC----CeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 029829            6 PNIFSILGFVSY----SVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD   81 (187)
Q Consensus         6 h~av~v~i~~~~----g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~   81 (187)
                      +.+|+|+.+..+    ++|||.++.... ..++.|++| ||++++||+         +.+||+||+.||||+.+...   
T Consensus        61 ~~av~v~~v~~~~~~~~~vlLv~q~R~~-~~~~~welP-gG~ve~gEs---------~~~aA~REl~EEtGl~~~~~---  126 (212)
T 2dsc_A           61 ADGVAVIPVLQRTLHYECIVLVKQFRPP-MGGYCIEFP-AGLIDDGET---------PEAAALRELEEETGYKGDIA---  126 (212)
T ss_dssp             CSEEEEEEEEECTTSCCEEEEEEEEEGG-GTEEEEECC-EEECCTTCC---------HHHHHHHHHHHHHCCCCEEE---
T ss_pred             CCEEEEEEEEeCCCCCcEEEEEEeecCC-CCCcEEECC-ccccCCCCC---------HHHHHHHHHHHHhCCCccce---
Confidence            457777655322    478886632211 246789997 699999999         89999999999999987643   


Q ss_pred             CeeeeeEEEEEccCCCCcceeEEEEEEEEec--C-C-----cCCCCccccceEEEecHHHHHHHHHh
Q 029829           82 EFTPLGRILYKAPSDGKWGEHELDYLLFIVR--D-V-----SVNPNPDEVAEYKYVNREQLKELLRK  140 (187)
Q Consensus        82 ~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~--~-~-----~~~~~~~Ev~~~~Wv~~~el~~~l~~  140 (187)
                        ..++.+ |..+   +.. ++.+++|++..  . .     ...++++|+.++.|++++++.+++..
T Consensus       127 --~~l~~~-~~~~---~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~  186 (212)
T 2dsc_A          127 --ECSPAV-CMDP---GLS-NCTIHIVTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLLQRLDA  186 (212)
T ss_dssp             --EECCCE-ESCT---TTB-CCEEEEEEEEEETTSGGGSSCCCCCCTTCCCEEEEEEGGGHHHHHHH
T ss_pred             --EEeccE-EcCC---Ccc-CceEEEEEEEEeCccccccCCCCCCCCCceEEEEEEEHHHHHHHHHh
Confidence              234433 3222   222 33455665542  1 1     34567789999999999999999873

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.58  E-value=8.3e-15  Score=126.92  Aligned_cols=118  Identities=8%  Similarity=-0.026  Sum_probs=87.3

Q ss_pred             eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829            7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL   86 (187)
Q Consensus         7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~   86 (187)
                      ..+.++|+|.+|+|||+||+... .|+|+|++| ||++++| +         +++|+.||+.||+|+.+....     .+
T Consensus       241 ~~~~~vi~~~~g~vLL~rR~~~g-~~~GlWefP-GG~ve~g-t---------~~~al~REl~EE~Gl~v~~~~-----~l  303 (369)
T 3fsp_A          241 PLAVAVLADDEGRVLIRKRDSTG-LLANLWEFP-SCETDGA-D---------GKEKLEQMVGEQYGLQVELTE-----PI  303 (369)
T ss_dssp             EEEEEEEECSSSEEEEEECCSSS-TTTTCEECC-EEECSSS-C---------THHHHHHHHTTSSSCCEEECC-----CC
T ss_pred             EEEEEEEEeCCCEEEEEECCCCC-CcCCcccCC-CcccCCC-C---------cHHHHHHHHHHHhCCceeeec-----cc
Confidence            35566677788999999998654 599999998 6999999 7         799999999999999987643     35


Q ss_pred             eEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 029829           87 GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF  161 (187)
Q Consensus        87 ~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~  161 (187)
                      +.+.+.++.    . +...++|.+.....    ..|..+++|++++++.++           .+.+..+.+++.+
T Consensus       304 ~~~~h~~~h----~-~~~~~~~~~~~~~~----~~e~~~~~Wv~~~el~~~-----------~l~~~~~~il~~l  358 (369)
T 3fsp_A          304 VSFEHAFSH----L-VWQLTVFPGRLVHG----GPVEEPYRLAPEDELKAY-----------AFPVSHQRVWREY  358 (369)
T ss_dssp             CEEEEECSS----E-EEEEEEEEEEECCS----SCCCTTEEEEEGGGGGGS-----------CCCHHHHHHHHHH
T ss_pred             ccEEEEcce----E-EEEEEEEEEEEcCC----CCCccccEEeeHHHhhhC-----------CCCHHHHHHHHHH
Confidence            555555432    1 22345666654332    468899999999998753           5677777777765

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.55  E-value=1.2e-15  Score=122.57  Aligned_cols=101  Identities=18%  Similarity=0.088  Sum_probs=73.1

Q ss_pred             EeCCCeEEEEEecCCCCCCCCceeeccccCCCCCC-ChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeEEEEE
Q 029829           14 FVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRE-SELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK   92 (187)
Q Consensus        14 ~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gE-s~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~~~y~   92 (187)
                      ++.+++|||+||      ++|.|++| ||++++|| +         +.+||+||+.||||+.+....+..+.+++.+.+.
T Consensus        52 ~~~~~~vLl~~r------~~g~w~~P-GG~ve~gE~t---------~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~  115 (212)
T 1u20_A           52 VPIRRVLLMMMR------FDGRLGFP-GGFVDTRDIS---------LEEGLKRELEEELGPALATVEVTEDDYRSSQVRE  115 (212)
T ss_dssp             EECCEEEEEEEE------TTSCEECS-EEEECTTTSC---------HHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEEC
T ss_pred             EecCCEEEEEEe------CCCeEECC-CcccCCCCCC---------HHHHHHHHHHHHHCCCccccceeeeeEEEecccc
Confidence            355678999998      47999998 69999999 8         8999999999999999876543222355555444


Q ss_pred             ccCCCCcceeEEEEEEEEecC-CcC----------CCCccccceEEEecHHHHHH
Q 029829           93 APSDGKWGEHELDYLLFIVRD-VSV----------NPNPDEVAEYKYVNREQLKE  136 (187)
Q Consensus        93 ~~~~~~~~e~e~~~vf~~~~~-~~~----------~~~~~Ev~~~~Wv~~~el~~  136 (187)
                      ++      .+...++|.+... ..+          ..+.+|+.++.|++++++.+
T Consensus       116 ~~------~~~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~  164 (212)
T 1u20_A          116 HP------QKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRD  164 (212)
T ss_dssp             TT------SCEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTT
T ss_pred             CC------CcEEEEEEEEEecCCCcccccccccccccCCcceEEEEEEEHHHhhh
Confidence            33      1345677777642 111          23457899999999998854

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.31  E-value=9e-12  Score=104.77  Aligned_cols=118  Identities=12%  Similarity=0.033  Sum_probs=71.5

Q ss_pred             eEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC---------CCCCeeee-eE
Q 029829           19 VMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV---------PVDEFTPL-GR   88 (187)
Q Consensus        19 ~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~---------~~~~l~~~-~~   88 (187)
                      +|||++|..     .|.|++| ||++++||+         +.+||+||+.||||+.+...         .+..+... +.
T Consensus       140 ~vLl~~r~~-----~g~W~lP-GG~Ve~GEs---------~~eAA~REl~EETGl~~~~~~~~~~~l~~~l~~l~~~~g~  204 (292)
T 1q33_A          140 QFVAIKRKD-----CGEWAIP-GGMVDPGEK---------ISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHL  204 (292)
T ss_dssp             EEEEEECTT-----TCSEECC-CEECCTTCC---------HHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEE
T ss_pred             EEEEEEecC-----CCcEeCC-CcccCCCCC---------HHHHHHHHHHHHhCCccccccccchhhHHHHHHHhhcccc
Confidence            699999864     3899997 799999999         89999999999999984210         11111100 22


Q ss_pred             EEEEccCC-CCcc--eeEEEEEEEEec-CCc-----CCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHH
Q 029829           89 ILYKAPSD-GKWG--EHELDYLLFIVR-DVS-----VNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVD  159 (187)
Q Consensus        89 ~~y~~~~~-~~~~--e~e~~~vf~~~~-~~~-----~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~  159 (187)
                      ..|..... ....  .+....+|.+.. +..     .....+|+.+++|++++++.             .+.+..+.++.
T Consensus       205 ~vy~~~~~dpr~~d~~~~~~~~f~~~~~~g~~~~~~~~~~~~E~~~~~W~~~del~-------------~L~~~h~~il~  271 (292)
T 1q33_A          205 VIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKL-------------KLYASHSQFIK  271 (292)
T ss_dssp             EEEEEECCCTTCCSSEEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTC-------------CCSTTHHHHHH
T ss_pred             eeecccccCCCCCcccEEEEEEEEEEeCCCccccccccCCCCccceEEEEEcccCc-------------ccCHhHHHHHH
Confidence            22332111 1110  122333444322 111     12345799999999999975             24566777777


Q ss_pred             HHHHH
Q 029829          160 NFLFK  164 (187)
Q Consensus       160 ~~l~~  164 (187)
                      .++..
T Consensus       272 ~~~~~  276 (292)
T 1q33_A          272 LVAEK  276 (292)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77543

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.28  E-value=2.7e-12  Score=103.70  Aligned_cols=94  Identities=15%  Similarity=-0.001  Sum_probs=63.6

Q ss_pred             eEEEEEecCCCCCCCCceeeccccCCCCCC-ChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeEEEEEccCCC
Q 029829           19 VMSGQQRSGTKVTFPLVWTNTCCSHPLYRE-SELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDG   97 (187)
Q Consensus        19 ~vLL~rRs~~k~~~pG~W~~~~gGhve~gE-s~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~~~y~~~~~~   97 (187)
                      ++|+++|.      +|.|++| ||++++|| +         +.+||+||++||||+.+....+..+.++.    ..+.. 
T Consensus        66 ~~ll~~r~------~g~w~lP-GG~ve~gE~t---------~~eaa~REl~EEtGl~~~~~~l~~l~~~~----~~~~~-  124 (217)
T 2xsq_A           66 AILMQMRF------DGRLGFP-GGFVDTQDRS---------LEDGLNRELREELGEAAAAFRVERTDYRS----SHVGS-  124 (217)
T ss_dssp             EEEEEEET------TSCEECS-EEECCTTCSS---------HHHHHHHHHHHHHCGGGGGCCCCGGGEEE----EEECS-
T ss_pred             cEEEEEcc------CCeEECC-ceecCCCCCC---------HHHHHHHHHHHHHCCCCccceeEEEEEEe----ecCCC-
Confidence            57777764      6899997 79999999 8         89999999999999998743222222221    21111 


Q ss_pred             CcceeEEEEEEEEecC-CcC----------CCCccccceEEEecHHHHH
Q 029829           98 KWGEHELDYLLFIVRD-VSV----------NPNPDEVAEYKYVNREQLK  135 (187)
Q Consensus        98 ~~~e~e~~~vf~~~~~-~~~----------~~~~~Ev~~~~Wv~~~el~  135 (187)
                       .. +.+.++|.+... ..+          ..+..|+.++.|++++++.
T Consensus       125 -~~-~~~~~~f~~~l~~~~~~~~e~~~~~~~~~~~E~~~v~~vPl~~l~  171 (217)
T 2xsq_A          125 -GP-RVVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTLR  171 (217)
T ss_dssp             -SS-SEEEEEEEEECCHHHHHHHHHHGGGSTTBTTTEEEEEECCCSBCT
T ss_pred             -CC-eEEEEEEEEEeccccceecccccccccccCCceeeEEEEEHHHhh
Confidence             11 345566666542 111          3345799999999999875

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=98.84  E-value=9.5e-09  Score=87.51  Aligned_cols=108  Identities=8%  Similarity=-0.017  Sum_probs=71.1

Q ss_pred             eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHh-CCCccCCCCCCeee
Q 029829            7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDEL-GICAEDVPVDEFTP   85 (187)
Q Consensus         7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~-Gl~~~~~~~~~l~~   85 (187)
                      ..|++++.+ +|+|||+  .     -.| |.+| ||.++.++           .++|+||+.||+ |+.+....     .
T Consensus       184 ~~vgaii~~-~g~vLL~--~-----~~G-W~LP-G~~~~~~~-----------~~~a~RE~~EEttGl~v~~~~-----L  237 (321)
T 3rh7_A          184 IRLGAVLEQ-QGAVFLA--G-----NET-LSLP-NCTVEGGD-----------PARTLAAYLEQLTGLNVTIGF-----L  237 (321)
T ss_dssp             EEEEEEEES-SSCEEEB--C-----SSE-EBCC-EEEESSSC-----------HHHHHHHHHHHHHSSCEEEEE-----E
T ss_pred             ceEEEEEEE-CCEEEEe--e-----CCC-ccCC-cccCCCCh-----------hHHHHHHHHHHhcCCEEeece-----E
Confidence            356666655 6999999  1     137 9998 57765554           369999999997 99997532     2


Q ss_pred             eeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q 029829           86 LGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF  163 (187)
Q Consensus        86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l~  163 (187)
                      ++.  |..+..     +.+..+|.+....      .+..+++|+++++|...          ....|-.+.++++|+.
T Consensus       238 ~~v--~~~~~~-----~~~~i~f~~~~~~------g~~~e~~~f~~~elp~~----------~~~~~~~~~~L~~y~~  292 (321)
T 3rh7_A          238 YSV--YEDKSD-----GRQNIVYHALASD------GAPRQGRFLRPAELAAA----------KFSSSATADIINRFVL  292 (321)
T ss_dssp             EEE--EECTTT-----CCEEEEEEEEECS------SCCSSSEEECHHHHTTC----------EESSHHHHHHHHHHHH
T ss_pred             EEE--EEcCCC-----ceEEEEEEEEeCC------CCeeeeEEECHHHCCCc----------ccCCHHHHHHHHHHHH
Confidence            332  444321     2233455565421      11388999999999852          2346889999999943

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=98.75  E-value=1.2e-08  Score=81.09  Aligned_cols=100  Identities=17%  Similarity=0.031  Sum_probs=63.3

Q ss_pred             CceEEEEEEEeCC-----C------eEEEEEecCCCCCCCCceeeccccCCCCCC-ChhhhhhhhcHHHHHHHHHHHHhC
Q 029829            5 VPNIFSILGFVSY-----S------VMSGQQRSGTKVTFPLVWTNTCCSHPLYRE-SELIEENALGVRNAAQRKLLDELG   72 (187)
Q Consensus         5 ~h~av~v~i~~~~-----g------~vLL~rRs~~k~~~pG~W~~~~gGhve~gE-s~~~~~~~~~~~~Aa~REl~EE~G   72 (187)
                      +..+.+++++.++     |      .||+|.|      +.|.|++| ||+|++|| +         +++|+.||+.||+|
T Consensus        20 ~~hach~mlya~~~~~lfg~~p~r~~iLmQ~R------~~G~weFP-GGkVe~gE~t---------~e~aL~REl~EElg   83 (214)
T 3kvh_A           20 WSHSCHAMLYAANPGQLFGRIPMRFSVLMQMR------FDGLLGFP-GGFVDRRFWS---------LEDGLNRVLGLGLG   83 (214)
T ss_dssp             CEEEEEEEEEEEEEEEETTTEEEEEEEEEEEE------TTSCEECS-EEEECTTTCC---------HHHHHHHSCCSCC-
T ss_pred             ccEeeEEEEEcCCccccccccchhheEEEeee------eCCEEeCC-CccCCCCCCC---------HHHHHHHHHHHhhC
Confidence            4567788887644     2      3788887      56889997 69999999 7         89999999999999


Q ss_pred             C-CccCCCCCCeeeeeEEEEEccCCCCcceeEEEEEEEEecC-Cc--------C-CCC-ccccceEEEecH
Q 029829           73 I-CAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD-VS--------V-NPN-PDEVAEYKYVNR  131 (187)
Q Consensus        73 l-~~~~~~~~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~-~~--------~-~~~-~~Ev~~~~Wv~~  131 (187)
                      + .+...     .++..+.+.++   .   +...++|.+... +.        + ..+ ..||....-||+
T Consensus        84 ~~~V~~~-----~y~~s~~~~yp---~---~V~LHfY~crl~~Ge~~~lE~~A~~A~d~G~EvlGlvRVPl  143 (214)
T 3kvh_A           84 CLRLTEA-----DYLSSHLTEGP---H---RVVAHLYARQLTLEQLHAVEISAVHSRDHGLEVLGLVRVPL  143 (214)
T ss_dssp             --CCCGG-----GEEEEEEC----------CEEEEEEEEECCHHHHHHHHHHHHTSTTBTTTEEEEEEECC
T ss_pred             Ceeeeee-----eeEEEEeccCC---C---EEEEEEEEEEeeCCccchhhhcccCCcccCceecceEEeee
Confidence            7 34432     34444433332   1   234577777641 11        1 112 357888888886

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=98.64  E-value=2e-07  Score=74.45  Aligned_cols=118  Identities=8%  Similarity=-0.115  Sum_probs=71.6

Q ss_pred             CCCCceEEEEEEEeCCC--eEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC-C
Q 029829            2 HKCVPNIFSILGFVSYS--VMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED-V   78 (187)
Q Consensus         2 ~g~~h~av~v~i~~~~g--~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~-~   78 (187)
                      .|++..+.+|++++..+  +|||.|+..      +.|.+| ||.+++||+         .++|++|||.||+|+.... .
T Consensus        55 ~g~R~sV~avil~~~~~~phVLLlq~~~------~~f~LP-GGkle~gE~---------~~eaL~REL~EELg~~~~~~~  118 (208)
T 3bho_A           55 IGMRRTVEGVLIVHEHRLPHVLLLQLGT------TFFKLP-GGELNPGED---------EVEGLKRLMTEILGRQDGVLQ  118 (208)
T ss_dssp             HCSEEEEEEEEEEEETTEEEEEEEEEET------TEEECS-EEECCTTCC---------HHHHHHHHHHHHHCCCC----
T ss_pred             hCCceEEEEEEEEcCCCCcEEEEEEcCC------CcEECC-CcccCCCCC---------HHHHHHHHHHHHhCCCcCCCc
Confidence            46778888888888766  798888754      367665 599999999         7999999999999973211 0


Q ss_pred             CCCCeeeeeEEEEEccCC---------CCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHH
Q 029829           79 PVDEFTPLGRILYKAPSD---------GKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKE  136 (187)
Q Consensus        79 ~~~~l~~~~~~~y~~~~~---------~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~  136 (187)
                      ..+--.++|.+ |+...+         ..+.-.|...+|++.......+.--.--...-+++=|+.+
T Consensus       119 ~~eIge~lg~w-wRp~fet~~YPYlP~Hit~pKE~~kly~V~Lp~~~~f~vPkn~kL~AvPLfely~  184 (208)
T 3bho_A          119 DWVIDDCIGNW-WRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYD  184 (208)
T ss_dssp             -CEEEEEEEEE-EECSSSSCCBSSCCTTCCSCSEEEEEEEEECCSSEEEEEETTCEEEEEEHHHHTT
T ss_pred             cEEEhheEEEE-ecCCCCCcCCCCCCcccCchhhheeeeeEecCccceEecCCCCeEEeecHHhhhc
Confidence            11112456663 333221         1122245667777775322111111224456677777643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	187
d1hzta_	153	d.113.1.2 (A:) Isopentenyl diphosphate isomerase {	4e-14
d2fkba1	161	d.113.1.2 (A:8-168) Hypothetical protein YfcD {Esc	4e-09
d2o5fa1	162	d.113.1.2 (A:7-168) Hypothetical protein DR0079 {D	3e-06

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

 Score = 64.5 bits (156), Expect = 4e-14
 Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 19/149 (12%)

Query: 23  QQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 82
            +R+ +K  +P VWTN+ C HP   ES           +A  R+   ELG+         
Sbjct: 19  TRRALSKKAWPGVWTNSVCGHPQLGES---------NEDAVIRRCRYELGVEITPPESIY 69

Query: 83  FTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKAD 142
                   Y+A       E+E+  +       ++  N DEV +Y++ +   +   +    
Sbjct: 70  P----DFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLHGID--- 122

Query: 143 AGEEGLKLSPWFRLVVDNF-LFKWWDHLE 170
                   SPW  +   N    K      
Sbjct: 123 --ATPWAFSPWMVMQATNREARKRLSAFT 149

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

 Score = 50.9 bits (121), Expect = 4e-09
 Identities = 24/154 (15%), Positives = 47/154 (30%), Gaps = 28/154 (18%)

Query: 9   FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
             I+       +  Q+R+ TK   P +   T        E             +A+R+  
Sbjct: 33  TYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQL---------LESARREAE 83

Query: 69  DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
           +ELGI         F   G+  ++  +           L   V         DEV+E  +
Sbjct: 84  EELGIAGVP-----FAEHGQFYFEDKNC-----RVWGALFSCVSHGPFALQEDEVSEVCW 133

Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL 162
           +  E++              + +P     +  ++
Sbjct: 134 LTPEEITARCD---------EFTPDSLKALALWM 158

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]} Length = 162

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

 Score = 42.9 bits (100), Expect = 3e-06
 Identities = 23/156 (14%), Positives = 50/156 (32%), Gaps = 23/156 (14%)

Query: 2   HKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRN 61
            + V    +     S   +   +RS +K  FP     +        E+            
Sbjct: 28  VRVV----NAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGET---------YEE 74

Query: 62  AAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPD 121
           A +R+  +EL +  + +              +P           Y L    D +   NP+
Sbjct: 75  AFRREAREELNVEIDALSWRPLA------SFSPFQTTLSSFMCVYEL--RSDATPIFNPN 126

Query: 122 EVAEYKYVNREQLKELLRKADAGEEGLK--LSPWFR 155
           +++  +++  E L   +   +A +  L   +   +R
Sbjct: 127 DISGGEWLTPEHLLARIAAGEAAKGDLAELVRRCYR 162

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	187
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	100.0
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.97
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.96
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.88
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.84
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.83
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.83
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.81
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.8
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.8
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.79
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.78
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.77
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.77
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.76
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.75
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.73
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.71
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.7
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.7
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.68
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.63
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.58
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.58
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.58
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.58
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.38
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.34
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	99.25
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.08

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.6e-34  Score=218.02  Aligned_cols=139  Identities=24%  Similarity=0.328  Sum_probs=119.5

Q ss_pred             CceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCee
Q 029829            5 VPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT   84 (187)
Q Consensus         5 ~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~   84 (187)
                      +||||+|+|+|++|++||+||+..|..|||+|++++|||+++||+         +.+||+||+.|||||++.....    
T Consensus         1 lHra~~v~i~n~~g~vLl~kRs~~k~~~pg~w~~~pgG~ve~gEt---------~~eaa~RE~~EE~Gi~~~~~~~----   67 (153)
T d1hzta_           1 LHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGES---------NEDAVIRRCRYELGVEITPPES----   67 (153)
T ss_dssp             CEECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCC---------HHHHHHHHHHHHHCCCBSCCEE----
T ss_pred             CceEEEEEEEECCCEEEEEEeCCCCCCCCCceecccCceeecCCc---------HHHHHHHHHHHHcCceeecccc----
Confidence            699999999999999999999999999999999988999999999         8999999999999998875421    


Q ss_pred             eeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 029829           85 PLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF  161 (187)
Q Consensus        85 ~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~  161 (187)
                      ....+.|.....++...+.++++|.+..+..+.+|++|+++++|++++++.+++..+     |..||||+++.+.+.
T Consensus        68 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ev~~~~W~~~~el~~~i~~~-----p~~~tpW~~~~~~~~  139 (153)
T d1hzta_          68 IYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLHGIDAT-----PWAFSPWMVMQATNR  139 (153)
T ss_dssp             EETTCEEEEECTTSCEEEEECCEEEEEBCSCCCCCTTTEEEEEEECHHHHHHHHHHC-----GGGBCHHHHHHHHSH
T ss_pred             eeccccccccccccccceeEEEEEEEeeCCCccCChhheeEEEEeeHHHHHHHHHcC-----CcccCHHHHHHHhhH
Confidence            123345666655566666777888887777888999999999999999999999986     589999999888764

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.5e-29  Score=194.12  Aligned_cols=135  Identities=18%  Similarity=0.163  Sum_probs=114.1

Q ss_pred             CCCCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 029829            2 HKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD   81 (187)
Q Consensus         2 ~g~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~   81 (187)
                      .|++|++|+|+++|++|+|||+||+..+..|||+|++++|||+++||+         +++||+||++|||||....    
T Consensus        26 ~~~~h~~v~v~v~~~~g~vLl~rR~~~~~~~pg~w~~~~GG~ie~gEs---------~~~aa~REl~EE~Gi~~~~----   92 (161)
T d2fkba1          26 QCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQ---------LLESARREAEEELGIAGVP----   92 (161)
T ss_dssp             HTCCEEEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCC---------HHHHHHHHHHHHHCCBSCC----
T ss_pred             CCCcEeEEEEEEEeCCCCEEEEEecCccccccccccccccccccccCc---------HHHHHHHHHHHHhCCccce----
Confidence            478999999999999999999999999999999999999999999999         8999999999999998754    


Q ss_pred             CeeeeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 029829           82 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF  161 (187)
Q Consensus        82 ~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~  161 (187)
                       +..++.+.|....     .+.+.++|.+..+.++.++++|+.+++|++++++.+++.         .++|++...+..|
T Consensus        93 -~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Ev~~~~w~~~~el~~~~~---------~~~P~~~~al~~~  157 (161)
T d2fkba1          93 -FAEHGQFYFEDKN-----CRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCD---------EFTPDSLKALALW  157 (161)
T ss_dssp             -CEEEEEEEEEETT-----EEEEEEEEEEECCCCCCCCTTTEEEEEEECHHHHHTTGG---------GBCHHHHHHHHHH
T ss_pred             -eEEEEEEEeecCC-----cEEEEEEEEEEECCCCcCChhHeeEEEEEeHHHHhhhhh---------ccCCcHHHHHHHH
Confidence             3557766665322     145667777777777888999999999999999987543         6899999888888


Q ss_pred             HHH
Q 029829          162 LFK  164 (187)
Q Consensus       162 l~~  164 (187)
                      +.+
T Consensus       158 ~~r  160 (161)
T d2fkba1         158 MKR  160 (161)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            754

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.96  E-value=1.9e-28  Score=187.94  Aligned_cols=123  Identities=13%  Similarity=0.070  Sum_probs=96.5

Q ss_pred             CCCCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 029829            2 HKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD   81 (187)
Q Consensus         2 ~g~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~   81 (187)
                      +|++|++|+++|+|++|++||+||+..|..+||+|++++|||+++||+         +.+||+||+.|||||++....  
T Consensus        24 ~~~~~~~v~~~v~~~~g~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gEs---------~~eaa~REl~EE~Gl~~~~~~--   92 (162)
T d2o5fa1          24 RWERVRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGET---------YEEAFRREAREELNVEIDALS--   92 (162)
T ss_dssp             CGGGSEEEEEEEECTTSCEEEEEC-------CCSBCCSEEEECBTTCC---------HHHHHHHHHHHHHCCCGGGSE--
T ss_pred             CCCeEEEEEEEEEcCCCCEEEEEeccCccccccccccccCCcccCCCC---------hhhhhhhhhhheeCcceeeEE--
Confidence            578999999999999999999999999999999999999999999999         899999999999999987542  


Q ss_pred             CeeeeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhc
Q 029829           82 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKA  141 (187)
Q Consensus        82 ~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~  141 (187)
                         ....+.+.. ....  ...++++|.+..+.++.++++|+.+++|++++++.+++.++
T Consensus        93 ---~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~Ev~~~~W~~~eel~~~~~~g  146 (162)
T d2o5fa1          93 ---WRPLASFSP-FQTT--LSSFMCVYELRSDATPIFNPNDISGGEWLTPEHLLARIAAG  146 (162)
T ss_dssp             ---EEEEEEECT-TTSS--CSSEEEEEEEECSSCCCCCTTTCSEEEEECHHHHHHHHHHT
T ss_pred             ---EEEEEEecc-cccc--ceEEEEEEEEecCCCccCChhHeeEEEEeeHHHHHHHHHCC
Confidence               233333322 2111  24466778787777788889999999999999999999886

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.88  E-value=6.9e-22  Score=149.28  Aligned_cols=118  Identities=19%  Similarity=0.180  Sum_probs=89.5

Q ss_pred             CceEEEEEEEeCCCeEEEEEecCC--CCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCC
Q 029829            5 VPNIFSILGFVSYSVMSGQQRSGT--KVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE   82 (187)
Q Consensus         5 ~h~av~v~i~~~~g~vLL~rRs~~--k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~   82 (187)
                      .|++++++++|.+|+|||+||+..  ....+|+|++| ||++++||+         +.+||+||++|||||.+...    
T Consensus        11 ~~~a~~~vi~~~~g~iLl~~r~~~~~~~~~~g~W~~P-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~~----   76 (158)
T d1sjya_          11 ELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIP-SGAVEDGEN---------PQDAAVREACEETGLRVRPV----   76 (158)
T ss_dssp             CEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECS-EEECCTTSC---------HHHHHHHHHHHHHSCCEEEE----
T ss_pred             ceeEEEEEEEeCCCEEEEEEEecCCCCCCCCCcEECC-ceecCCCCC---------HHHHHHHHHHHHhCccceee----
Confidence            468999999999999999999754  34568999997 799999999         89999999999999988753    


Q ss_pred             eeeeeEEEEEccCCCCcceeEEEEEEEEec--CCcC-CCCccccceEEEecHHHHHHHHHhc
Q 029829           83 FTPLGRILYKAPSDGKWGEHELDYLLFIVR--DVSV-NPNPDEVAEYKYVNREQLKELLRKA  141 (187)
Q Consensus        83 l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~--~~~~-~~~~~Ev~~~~Wv~~~el~~~l~~~  141 (187)
                       .+++.+.+..+.  +.  ....++|++..  .... ..+.+|+.+++|++++++.+++..+
T Consensus        77 -~~i~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~l~~~~  133 (158)
T d1sjya_          77 -KFLGAYLGRFPD--GV--LILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQLYAAG  133 (158)
T ss_dssp             -EEEEEEEEECTT--SC--EEEEEEEEEEECSSCCCCCCCCSSEEEEEEECHHHHHHHHHTT
T ss_pred             -EEEEEEEEECCC--CC--EEEEEEEEEEEcCCcccCCCCCcceEEEEEEEHHHHhhhhhCC
Confidence             456665555443  22  33446666553  2222 2335799999999999999988764

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=2.3e-20  Score=141.32  Aligned_cols=116  Identities=11%  Similarity=0.032  Sum_probs=86.4

Q ss_pred             ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829            6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      ..+|+++|+|.+|+|||+||+..  .++|.|++| ||++++||+         +.+||+||+.|||||.+....   +..
T Consensus        18 ~~~v~~vi~~~~~~vLL~kR~~~--~~~g~W~lP-GG~ve~gEt---------~~~aa~REl~EEtGl~~~~~~---~~~   82 (160)
T d1ryaa_          18 LVSLDFIVENSRGEFLLGKRTNR--PAQGYWFVP-GGRVQKDET---------LEAAFERLTMAELGLRLPITA---GQF   82 (160)
T ss_dssp             EEEEEEEEECTTSCEEEEEECSS--SSTTSEECC-EEECCTTCC---------HHHHHHHHHHHHHSSCCCGGG---SEE
T ss_pred             EEEEEEEEEeCCCeEEEEEeCCC--CCCCcEecc-cccccCCCc---------HHHHHHHHHHHHhCceEeeee---eeE
Confidence            45788899999999999999754  489999987 799999999         899999999999999986432   345


Q ss_pred             eeEEEEEccCC---CCcceeEEEEEEEEecC-CcCCCCccccceEEEecHHHHHH
Q 029829           86 LGRILYKAPSD---GKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKE  136 (187)
Q Consensus        86 ~~~~~y~~~~~---~~~~e~e~~~vf~~~~~-~~~~~~~~Ev~~~~Wv~~~el~~  136 (187)
                      ++.+.|..+..   .....+.++.+|.+... .......+|+.+++|++++++.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~e~~W~~~~el~~  137 (160)
T d1ryaa_          83 YGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLA  137 (160)
T ss_dssp             EEEEEEEESSBTTBSSSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHHH
T ss_pred             EEEEEEeccccccCCCcceEEEEEEEEEEecCCCccCCCcceEEEEEEEHHHhhc
Confidence            55555544321   12222445556666543 34455568999999999999975

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.83  E-value=6.2e-20  Score=134.36  Aligned_cols=119  Identities=18%  Similarity=0.128  Sum_probs=87.8

Q ss_pred             eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829            7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL   86 (187)
Q Consensus         7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~   86 (187)
                      .+|+++|+|.++++||+||.      .|.|++| |||+++||+         +.+||.||++|||||.+...     .++
T Consensus         3 v~agavv~~~~~~vLl~~~~------~g~w~~P-gG~ve~gEt---------~~~aa~RE~~EEtGi~~~~~-----~~~   61 (126)
T d1vcda1           3 LGAGGVVFNAKREVLLLRDR------MGFWVFP-KGHPEPGES---------LEEAAVREVWEETGVRAEVL-----LPL   61 (126)
T ss_dssp             EEEEEEEECTTSCEEEEECT------TSCEECC-EECCCTTCC---------HHHHHHHHHHHHHCCEEEEE-----EEE
T ss_pred             EEEEEEEEECCCEEEEEEcC------CCCEECC-ccccCCCCC---------HHHHHHHHHHHHcCCeeEEE-----EEE
Confidence            57899999999999999874      3778887 699999999         89999999999999988643     456


Q ss_pred             eEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 029829           87 GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL  162 (187)
Q Consensus        87 ~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l  162 (187)
                      +.+.|..+.  ..  +...+.|.+..+..+.++ +|+.+++|++++++.+++           ..|..+.+++.++
T Consensus        62 ~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~-~e~~~~~W~~~~e~~~~~-----------~~~~~~~il~~~~  121 (126)
T d1vcda1          62 YPTRYVNPK--GV--EREVHWFLMRGEGAPRLE-EGMTGAGWFSPEEARALL-----------AFPEDLGLLEVAL  121 (126)
T ss_dssp             EEEEEECTT--SC--EEEEEEEEEEEESCCCCC-TTCCEEEEECHHHHHHHB-----------CSHHHHHHHHHHH
T ss_pred             eeeeeccCC--Ce--EEEEEEEEEEEcCCCCCC-ccceEEEEEEHHHHhhcc-----------CChHHHHHHHHHH
Confidence            665555432  21  334455666555445554 689999999999998763           2355566666553

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.83  E-value=4.2e-20  Score=137.46  Aligned_cols=128  Identities=10%  Similarity=0.038  Sum_probs=90.6

Q ss_pred             ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829            6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      |.+|+++|.+ +|++||.||+..  ...|.|++| ||+++.||+         +.+||+||++||||+.+...     ..
T Consensus         3 ~v~va~ii~~-~~k~Llv~r~~~--~~~~~w~~P-gG~ve~gEt---------~~~aa~RE~~EEtGl~~~~~-----~~   64 (146)
T d2b0va1           3 NVTVAAVIEQ-DDKYLLVEEIPR--GTAIKLNQP-AGHLEPGES---------IIQACSREVLEETGHSFLPE-----VL   64 (146)
T ss_dssp             EEEEEEECEE-TTEEEEEEECSS--SSCCEEECS-EEECCTTSC---------HHHHHHHHHHHHHSEEEEEE-----EE
T ss_pred             eEEEEEEEEe-CCEEEEEEEecC--CCCCEEECC-eeeECCCCC---------HHHHHHHHHHHhheeecccc-----eE
Confidence            6677766654 699999999765  357899998 799999999         89999999999999998653     33


Q ss_pred             eeEEEEEccCCCCcceeEEEEEEEEec--CCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 029829           86 LGRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL  162 (187)
Q Consensus        86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~--~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l  162 (187)
                      ++.+.+..+..+ .  +...++|.+..  .......++|+.+++|++++++.+...        ...+|.....+++|+
T Consensus        65 ~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~--------~~~~~~v~~~l~~y~  132 (146)
T d2b0va1          65 TGIYHWTCASNG-T--TYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQA--------MHRTPLVMQCIEDYH  132 (146)
T ss_dssp             EEEEEEEETTTT-E--EEEEEEEEEEEEEECTTSCCCTTEEEEEEEEHHHHHHTGG--------GBSSTHHHHHHHHHH
T ss_pred             EEEEEEecCCCC-e--EEEEEEEEEEeecCCCCCCCCcceeEEEEeeHHHHhhCcc--------ccCCHHHHHHHHHHH
Confidence            554444443321 1  23334444433  223344557999999999999987533        235688888888884

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=5.5e-20  Score=134.66  Aligned_cols=103  Identities=15%  Similarity=0.141  Sum_probs=77.3

Q ss_pred             EEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeEEE
Q 029829           11 ILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRIL   90 (187)
Q Consensus        11 v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~~~   90 (187)
                      .+|++.+|+|||+||+.++ .+||+|++| ||++++||+         +.+||.||++||||+.+....     +++.+.
T Consensus         9 ~ii~~~~~~vLl~~R~~~~-~~~g~W~~P-gG~ve~gEs---------~~~a~~RE~~EE~gl~~~~~~-----~~~~~~   72 (129)
T d1puna_           9 GIIRNENNEIFITRRAADA-HMANKLEFP-GGKIEMGET---------PEQAVVRELQEEVGITPQHFS-----LFEKLE   72 (129)
T ss_dssp             EECBCTTSCEEEBCCCSSC-SCTTCCBCS-CCSCTTTSC---------TTHHHHHHHHHTTCSCCCCCC-----CSEEEE
T ss_pred             EEEEECCCEEEEEEecCCC-CCCCcEECC-cceecCCCc---------hhHHHHHHHHHHhCCccccce-----eeeEEe
Confidence            4456778999999998764 589999997 799999999         799999999999999987643     356655


Q ss_pred             EEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHH
Q 029829           91 YKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKE  136 (187)
Q Consensus        91 y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~  136 (187)
                      |..+.     .+...++|.+.. +..  +...|..+++|++++++..
T Consensus        73 ~~~~~-----~~~~~~~~~~~~~~~~--~~~~E~~~~~W~~~~el~~  112 (129)
T d1puna_          73 YEFPD-----RHITLWFWLVERWEGE--PWGKEGQPGEWMSLVGLNA  112 (129)
T ss_dssp             EECSS-----EEEEEEEEECCCCSSC--CCTTSSSCCEEECGGGCCT
T ss_pred             ecccc-----cceeEEEEEEeeccCc--CCCCccceEEEEEHHHccc
Confidence            55432     133445565543 333  3446889999999999764

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=9.3e-20  Score=134.55  Aligned_cols=107  Identities=14%  Similarity=0.088  Sum_probs=79.3

Q ss_pred             CceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCee
Q 029829            5 VPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT   84 (187)
Q Consensus         5 ~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~   84 (187)
                      ++.+|.+++.+ ++++||+||...   .+|.|++| ||++++|||         +++||+||++||||+.+...     .
T Consensus         2 i~paViv~i~~-~~~vLL~~~~~~---~~g~w~lp-GG~ve~GEt---------~~~aa~REl~EEtG~~~~~~-----~   62 (131)
T d1vk6a2           2 IAPCIIVAIRR-DDSILLAQHTRH---RNGVHTVL-AGFVEVGET---------LEQAVAREVMEESGIKVKNL-----R   62 (131)
T ss_dssp             CEEEEEEEEEE-TTEEEEEEETTT---CSSCCBCE-EEECCTTCC---------HHHHHHHHHHHHHCCEEEEE-----E
T ss_pred             cccEEEEEEEe-CCEEEEEEeccC---CCCCEecc-cCCCcCCCc---------HHHHHHHHHHHHhCCcccce-----e
Confidence            34677666665 579999988643   36899986 799999999         89999999999999988643     3


Q ss_pred             eeeEEEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHH
Q 029829           85 PLGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        85 ~~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~  137 (187)
                      .++...+..      . +.+.++|.+.. +.++.++++|+.+++|++++++..+
T Consensus        63 ~~~~~~~~~------~-~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~el~~l  109 (131)
T d1vk6a2          63 YVTSQPWPF------P-QSLMTAFMAEYDSGDIVIDPKELLEANWYRYDDLPLL  109 (131)
T ss_dssp             EEEEEEEET------T-EEEEEEEEEEEEECCCCCCTTTEEEEEEEETTSCCSC
T ss_pred             EEEEeccCc------C-ceEEEEEEEEEcCCcccCCCccEEEEEEEcHHHHhhC
Confidence            454433321      1 34556666654 4567788899999999999998654

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.80  E-value=3.5e-19  Score=136.03  Aligned_cols=114  Identities=23%  Similarity=0.283  Sum_probs=76.9

Q ss_pred             ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829            6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      +.+|+++|+|.+|+|||+||+.    .||.|.+| ||+++.||+         +++||+||+.|||||.+.....   ..
T Consensus        14 R~~Vg~vI~n~~~~vLL~kR~~----~~g~W~~P-gG~ve~gEt---------~~~Aa~REl~EEtGl~~~~~~~---~~   76 (165)
T d1jkna_          14 RRNVGICLMNNDKKIFAASRLD----IPDAWQMP-QGGIDEGED---------PRNAAIRELREETGVTSAEVIA---EV   76 (165)
T ss_dssp             EEEEEEEEECTTSCEEEEEESS----STTCEECC-EECCCTTCC---------HHHHHHHHHHHHTCCCSEEEEE---EC
T ss_pred             cccEEEEEEeCCCEEEEEEEcC----CCCcccCc-cceEcCCCC---------hhHHHHHHHHHhhccccccccc---cc
Confidence            5689999999999999999974    47999997 699999999         8999999999999999864321   11


Q ss_pred             eeEEEEEccC----------CCCcceeEEEEEEEEec---CCcCCC-----CccccceEEEecHHHHHHH
Q 029829           86 LGRILYKAPS----------DGKWGEHELDYLLFIVR---DVSVNP-----NPDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        86 ~~~~~y~~~~----------~~~~~e~e~~~vf~~~~---~~~~~~-----~~~Ev~~~~Wv~~~el~~~  137 (187)
                      .+...+..+.          ..... ....++|++..   +..+.+     ...|+.+++|++++++.+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~~~~~W~~~~el~~~  145 (165)
T d1jkna_          77 PYWLTYDFPPKVREKLNIQWGSDWK-GQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDL  145 (165)
T ss_dssp             SSCEEEECCHHHHHHHHHHTCCCCS-EEEECCEEEEECSCTTTCCSSCSSSSCCCEEEEEEECTTHHHHH
T ss_pred             cccccccccceeeceeeeeecCCcc-ceeeEEEEEEEeCCCceeecCCCCCCCCeeEEeEECCHHHHHHh
Confidence            1222222111          11111 12223333322   222222     2349999999999999865

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=5.1e-19  Score=133.99  Aligned_cols=111  Identities=10%  Similarity=0.142  Sum_probs=79.8

Q ss_pred             CceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCee
Q 029829            5 VPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT   84 (187)
Q Consensus         5 ~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~   84 (187)
                      .+|.++++++..+|+|||++|+..  .+.|+|++| ||++++||+         +.+||+||++|||||.+...     .
T Consensus         3 ~~r~~~~v~i~~~~~vLL~~r~~~--~~~g~W~lP-GG~ve~gEt---------~~~aa~RE~~EEtGl~~~~~-----~   65 (156)
T d1irya_           3 ASRLYTLVLVLQPQRVLLGMKKRG--FGAGRWNGF-GGKVQEGET---------IEDGARRELQEESGLTVDAL-----H   65 (156)
T ss_dssp             CCEEEEEECEECSSEEEEEEESSS--SSBTCEECB-CCBCCTTCC---------HHHHHHHHHHHHHSCCBSCC-----C
T ss_pred             CcEEEEEEEEEECCEEEEEEecCC--CCCCEEECc-EeEecCCCC---------HHHHHHHHHHHHHCCcccce-----E
Confidence            467888888888899999999754  367999987 799999999         89999999999999988754     3


Q ss_pred             eeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHH
Q 029829           85 PLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKE  136 (187)
Q Consensus        85 ~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~  136 (187)
                      +++.+.+..+..+.   +..+++|.+.. ....+...|..+.+|++++++..
T Consensus        66 ~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~ee~~~~W~~~~~l~~  113 (156)
T d1irya_          66 KVGQIVFEFVGEPE---LMDVHVFCTDS-IQGTPVESDEMRPCWFQLDQIPF  113 (156)
T ss_dssp             EEEEEEEEETTCSC---EEEEEEECCCC-BCSCCCCCSSEEEEEEETTCCCS
T ss_pred             EEEEEEEEcCCCCE---EEEEEEEEEEe-ecCcccCCchhheEEeEHHHCCc
Confidence            46655565544322   22344444332 22233334556789999999874

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.78  E-value=2.1e-19  Score=140.63  Aligned_cols=116  Identities=16%  Similarity=-0.015  Sum_probs=78.9

Q ss_pred             CCceEEEEEEEeC-CCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCC
Q 029829            4 CVPNIFSILGFVS-YSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE   82 (187)
Q Consensus         4 ~~h~av~v~i~~~-~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~   82 (187)
                      ..|.||.|+++++ +.+|||+||+.....+||.|++| ||++++||+         +.+||+||+.|||||....+    
T Consensus        30 ~r~aaVlv~~~~~~~~~vll~kR~~~l~~h~G~~~fP-GG~~e~~E~---------~~~aAlRE~~EE~Gl~~~~~----   95 (187)
T d1nqza_          30 YRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFP-GGSLDAGET---------PTQAALREAQEEVALDPAAV----   95 (187)
T ss_dssp             CEEEEEEEEEESSSSCBBCEEEEC------CCCEECS-EEECCTTCC---------HHHHHHHHHHHHHCCCGGGC----
T ss_pred             CCccEEEEEEEECCCCEEEEEEcCCCCCCCCCeEeCC-ccccccCCc---------hhHHHHHHHHHhhcccccee----
Confidence            4566788788754 45899999998877899999998 799999998         79999999999999998764    


Q ss_pred             eeeeeEEEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHH
Q 029829           83 FTPLGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        83 l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~  137 (187)
                       ..+|.+.+..... +.  ....+++.+.. ......+.+||+++.|++++++.+.
T Consensus        96 -~~lg~l~~~~~~~-~~--~V~p~v~~l~~~~~~~~~~~~EV~~v~~vpl~~L~~~  147 (187)
T d1nqza_          96 -TLLGELDDVFTPV-GF--HVTPVLGRIAPEALDTLRVTPEVAQIITPTLAELRAV  147 (187)
T ss_dssp             -EEEEECCCEEETT-TE--EEEEEEEEECGGGGGGCCCCTTEEEEECCBHHHHHHS
T ss_pred             -EEeecccceeecc-cc--EEEEEEEEECCccccccccCCcceEEEeccHHHHhcC
Confidence             3466543222211 11  12234443432 2334456689999999999998763

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.77  E-value=1.2e-18  Score=131.49  Aligned_cols=111  Identities=13%  Similarity=0.100  Sum_probs=75.2

Q ss_pred             CceEEE-EEEEeC-CCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCC
Q 029829            5 VPNIFS-ILGFVS-YSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE   82 (187)
Q Consensus         5 ~h~av~-v~i~~~-~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~   82 (187)
                      .+..++ |+|++. ++++||++|+.....+ |.|++| |||+++|||         +.+||.||++|||||.+...    
T Consensus         6 ~~~~~~~~~i~~~~~~~lLl~~R~~~~~~~-~~w~~P-GG~ve~gEs---------~~~aa~RE~~EEtGl~v~~~----   70 (155)
T d2b06a1           6 LTILTNICLIEDLETQRVVMQYRAPENNRW-SGYAFP-GGHVENDEA---------FAESVIREIYEETGLTIQNP----   70 (155)
T ss_dssp             CEEEEEEEEEEETTTTEEEEEEEC-----C-CEEECC-CCBCCTTSC---------HHHHHHHHHHHHHSEEEESC----
T ss_pred             cEEEEEEEEEEECCCCEEEEEEECCCCCCC-CcEECc-eeEEcCCCC---------HHHHHHHHHHHhcCeeEeee----
Confidence            344333 445564 4699999998766544 669997 799999999         89999999999999998754    


Q ss_pred             eeeeeEEEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHH
Q 029829           83 FTPLGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        83 l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~  137 (187)
                       .+++...+.....    .+.+.++|.+.. ++.  +...|..+++|++++++.++
T Consensus        71 -~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~~el~~l  119 (155)
T d2b06a1          71 -QLVGIKNWPLDTG----GRYIVICYKATEFSGT--LQSSEEGEVSWVQKDQIPNL  119 (155)
T ss_dssp             -EEEEEEEEECTTS----CEEEEEEEEECEEEEC--CCCBTTBEEEEEEGGGGGGS
T ss_pred             -EEEEEEEeecCCC----CeEEEEEEEEEecCCc--cCCCchheEEEEEHHHhccC
Confidence             3455544544321    244556666643 233  44568899999999998753

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.77  E-value=6.3e-18  Score=123.86  Aligned_cols=113  Identities=16%  Similarity=0.031  Sum_probs=75.7

Q ss_pred             ceEEEEEEEeC-CC--eEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCC
Q 029829            6 PNIFSILGFVS-YS--VMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE   82 (187)
Q Consensus         6 h~av~v~i~~~-~g--~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~   82 (187)
                      -|++++++++. ++  ++||.||+.    .||.|.+| ||++++||+         +.+||+||+.||||+++....   
T Consensus         2 vraag~vv~~~~~~~~~~Ll~~r~~----~~g~W~~P-gG~ie~gE~---------~~~aa~RE~~EEtGl~~~~~~---   64 (137)
T d1ktga_           2 VKAAGLVIYRKLAGKIEFLLLQASY----PPHHWTPP-KGHVDPGED---------EWQAAIRETKEEANITKEQLT---   64 (137)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEESS----TTCCEESS-EEECCTTCC---------HHHHHHHHHHHHHCCCGGGEE---
T ss_pred             EEEEEEEEEEEcCCCEEEEEEEEcC----CCCcEeCc-ccccccCCC---------HHHHHHHHHHHHhCCcceeee---
Confidence            37788888763 23  689988874    36999997 799999999         899999999999999987542   


Q ss_pred             eeeeeEEEEEccCCCCcceeEEEEEEEEec--CCcCCCCccccceEEEecHHHHHHHHH
Q 029829           83 FTPLGRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELLR  139 (187)
Q Consensus        83 l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~--~~~~~~~~~Ev~~~~Wv~~~el~~~l~  139 (187)
                        .+..+.+......... ...+++|.+..  +..+.++ +|+.+++|++++++.+.+.
T Consensus        65 --~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~E~~~~~W~~~~e~~~~~~  119 (137)
T d1ktga_          65 --IHEDCHETLFYEAKGK-PKSVKYWLAKLNNPDDVQLS-HEHQNWKWCELEDAIKIAD  119 (137)
T ss_dssp             --EEEEEEEEEEEEETTE-EEEEEEEEEEECSCCCCCCC-TTEEEEEEECHHHHHHHHC
T ss_pred             --eeeeeeeeeecCCCcc-eEEEEEEEEEecCCCCcCCC-cceEEEEEEEHHHHHHhcC
Confidence              2222222111111111 22334444433  3344555 6999999999999997643

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.4e-18  Score=128.04  Aligned_cols=113  Identities=15%  Similarity=0.064  Sum_probs=74.0

Q ss_pred             CCCceEEEEEEEeC--CCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCC
Q 029829            3 KCVPNIFSILGFVS--YSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV   80 (187)
Q Consensus         3 g~~h~av~v~i~~~--~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~   80 (187)
                      |..++ +++++++.  ++.+||.+|+.    .||.|++| ||++++||+         +.+||+||+.|||||.+...  
T Consensus         9 ~~r~~-a~~vv~~~~~~~~~lL~~~~~----~~~~W~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~~--   71 (135)
T d2fvva1           9 GYKKR-AACLCFRSESEEEVLLVSSSR----HPDRWIVP-GGGMEPEEE---------PSVAAVREVCEEAGVKGTLG--   71 (135)
T ss_dssp             SCEEE-EEEEEESSTTCCEEEEEECSS----CTTSEECS-EEECCTTCC---------HHHHHHHHHHHHHCEEEEEE--
T ss_pred             CCceE-EEEEEEEecCCCEEEEEEEeC----CCCcEECC-ccccCCCCC---------HHHHHHHHHHHHhCCcceee--
Confidence            44455 45555543  34667766653    47999997 799999999         89999999999999988643  


Q ss_pred             CCeeeeeEEEEEccCCCCcceeEEEEEEEEe-cCCcCCCCccccceEEEecHHHHHHHHHh
Q 029829           81 DEFTPLGRILYKAPSDGKWGEHELDYLLFIV-RDVSVNPNPDEVAEYKYVNREQLKELLRK  140 (187)
Q Consensus        81 ~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~-~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~  140 (187)
                         .+++.+.+.  .  ... ....+.+.+. .......+.+|+.+++|++++++.+++..
T Consensus        72 ---~~~~~~~~~--~--~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~l~~  124 (135)
T d2fvva1          72 ---RLVGIFENQ--E--RKH-RTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQY  124 (135)
T ss_dssp             ---EEEEEEEET--T--TTE-EEEEEEEEEEEECSSCHHHHHHCCCEEEEEHHHHHHHHTT
T ss_pred             ---EEEEEEeec--c--CCc-cEEEEEEEEEeecCCCCCCCCceeEEEEEEHHHHHHHHhc
Confidence               334443222  1  111 2222333333 22333334578999999999999998764

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.75  E-value=7e-18  Score=125.44  Aligned_cols=125  Identities=18%  Similarity=0.081  Sum_probs=81.8

Q ss_pred             eEEEEEEEeCCCe-EEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829            7 NIFSILGFVSYSV-MSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         7 ~av~v~i~~~~g~-vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      .+++++|++.++. +|++++.      .|.|++| ||++++||+         +.+||+||+.|||||++...     ..
T Consensus        18 ~~~~~vi~~~~~~~lll~~~~------~~~w~lP-gG~ie~gEs---------~~~aa~RE~~EEtGl~~~~~-----~~   76 (147)
T d2azwa1          18 YAAYIIVSKPENNTMVLVQAP------NGAYFLP-GGEIEGTET---------KEEAIHREVLEELGISVEIG-----CY   76 (147)
T ss_dssp             CEEEEECEEGGGTEEEEEECT------TSCEECS-EEECCTTCC---------HHHHHHHHHHHHHSEEEEEE-----EE
T ss_pred             CeEEEEEEECCCCEEEEEEcC------CCeEECc-EeEeCCCCC---------HHHHHHHHHHhhhceeeeee-----eE
Confidence            4777888887765 5555442      2679887 699999999         89999999999999987643     33


Q ss_pred             eeEEEEEccCCCCcc-eeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q 029829           86 LGRILYKAPSDGKWG-EHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF  163 (187)
Q Consensus        86 ~~~~~y~~~~~~~~~-e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l~  163 (187)
                      ++.+.+......... .+..+++|.+........+.+|+.+++|++++++.+.+.           -+..+.+++.||.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~l~-----------~~~~r~~l~~~la  144 (147)
T d2azwa1          77 LGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAVRLLK-----------RGSHRWAVEKWLA  144 (147)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEEEEEEEEEECSSCC-CCSEEEEECHHHHHHHBS-----------CHHHHHHHHHHHH
T ss_pred             EEEEEEEeeeccCCceEEEEEEEEEEEeccccCCCCccceEEEEEEHHHHHHHcC-----------ChhHHHHHHHHHh
Confidence            454433332222222 123456666654333334457899999999999987643           2345666666653

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.73  E-value=1.5e-18  Score=130.41  Aligned_cols=109  Identities=10%  Similarity=0.031  Sum_probs=68.9

Q ss_pred             EEEEEEEeCC-CeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829            8 IFSILGFVSY-SVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL   86 (187)
Q Consensus         8 av~v~i~~~~-g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~   86 (187)
                      +++++|+|.+ ++|||.||...    +|.|++| ||+++.||+         +.+||+||+.|||||++.....     .
T Consensus         4 v~Gaii~~~~~~kvLLvk~~~~----~~~W~lP-gG~ie~gEs---------~~~aa~RE~~EEtGi~~~~~~~-----~   64 (151)
T d2a6ta2           4 VRGAIMLDMSMQQCVLVKGWKA----SSGWGFP-KGKIDKDES---------DVDCAIREVYEETGFDCSSRIN-----P   64 (151)
T ss_dssp             EEEEEEBCSSSSEEEEEEESST----TCCCBCS-EEECCTTCC---------HHHHHHHHHHHHHCCCCTTTCC-----T
T ss_pred             EEEEEEEECCCCEEEEEEEeCC----CCCEECC-cccccCCCC---------HHHHHHHHHHHHhCCCceeeee-----c
Confidence            5688889876 68999988532    5789987 699999999         8999999999999998865432     1


Q ss_pred             eEEEEEccCCCCcceeEEEEEEEEec--CCcC-CCCccccceEEEecHHHHHHHHHh
Q 029829           87 GRILYKAPSDGKWGEHELDYLLFIVR--DVSV-NPNPDEVAEYKYVNREQLKELLRK  140 (187)
Q Consensus        87 ~~~~y~~~~~~~~~e~e~~~vf~~~~--~~~~-~~~~~Ev~~~~Wv~~~el~~~l~~  140 (187)
                      ..+.+....  .   ....+.++...  +..+ ..+.+|+.++.|++++++..+...
T Consensus        65 ~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~Ei~~~~W~~~~el~~~~~~  116 (151)
T d2a6ta2          65 NEFIDMTIR--G---QNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKN  116 (151)
T ss_dssp             TCEEEEEET--T---EEEEEEEECCCCTTCCCC------EEEEEEEEGGGSTTCC--
T ss_pred             ceEEeeccc--C---ceEEEEEEEEeccCCcccccCCCccceEEEEEHHHhhhhhhc
Confidence            111122111  1   12222222222  2222 234579999999999999875543

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.71  E-value=5e-18  Score=127.76  Aligned_cols=110  Identities=16%  Similarity=0.096  Sum_probs=76.4

Q ss_pred             eEEEEEEE--eCC-CeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCe
Q 029829            7 NIFSILGF--VSY-SVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF   83 (187)
Q Consensus         7 ~av~v~i~--~~~-g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l   83 (187)
                      .+|.++|+  +++ .+|||+||+..  .++|.|.+| ||++++||+         +.+||+||++||||+++...     
T Consensus        11 v~Vd~Vi~~~~~~~~~vLLv~R~~~--p~~g~W~lP-GG~ie~~Es---------~~~aa~REl~EEtGl~~~~~-----   73 (147)
T d2fb1a2          11 LGIDCIIFGFNEGEISLLLLKRNFE--PAMGEWSLM-GGFVQKDES---------VDDAAKRVLAELTGLENVYM-----   73 (147)
T ss_dssp             EEEEEEEEEEETTEEEEEEEECSSS--SSTTCEECE-EEECCTTSC---------HHHHHHHHHHHHHCCCSCEE-----
T ss_pred             eEEEEEEEEEeCCcCEEEEEEccCC--CCCCcEeCc-EeeecCCCC---------HHHHHHHHHHHHhCCcccce-----
Confidence            46667765  333 37999999754  478999997 799999999         89999999999999987643     


Q ss_pred             eeeeEEEEEccCCCCcceeEEEEEEEEecC-CcCCCCccccceEEEecHHHHHH
Q 029829           84 TPLGRILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKE  136 (187)
Q Consensus        84 ~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~-~~~~~~~~Ev~~~~Wv~~~el~~  136 (187)
                      ..++.  |..+... ...+.+..+|.+... .......+|..+++|++++++.+
T Consensus        74 ~~~~~--~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~lp~  124 (147)
T d2fb1a2          74 EQVGA--FGAIDRD-PGERVVSIAYYALININEYDRELVQKHNAYWVNINELPA  124 (147)
T ss_dssp             EEEEE--ECCTTSS-SSSCEEEEEEEEECCTTSSCHHHHHHTTEEEEETTSCCC
T ss_pred             eeeeE--ecCCccc-CCCceEEEEEEEEecCCcccCCCcchhheEEecHHhchh
Confidence            34544  3333221 122445455555542 23344557899999999998864

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.5e-16  Score=117.86  Aligned_cols=113  Identities=17%  Similarity=0.120  Sum_probs=76.7

Q ss_pred             CCCceEEEEEEEe---------CCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCC
Q 029829            3 KCVPNIFSILGFV---------SYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI   73 (187)
Q Consensus         3 g~~h~av~v~i~~---------~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl   73 (187)
                      .+.-|++++++++         .++++||.||+.++    +.|.+| ||++++||+         +.+||+||++||||+
T Consensus         5 ~m~~~~~g~i~f~~~~~~~~~~~~~~~LL~~~~~~~----~~W~lP-gG~ie~gEt---------~~~aa~REl~EEtG~   70 (153)
T d1xsba_           5 SMALRACGLIIFRRCLIPKVDNNAIEFLLLQASDGI----HHWTPP-KGHVEPGED---------DLETALRATQEEAGI   70 (153)
T ss_dssp             CCSEEEEEEEEEEECSSCSSSSTTEEEEEEEESSTT----CCEECC-EEECCSSSC---------HHHHHHHHHHHTTSC
T ss_pred             ccchheeEEEEEeccccccccCCCCEEEEEEecCCC----CcEECC-eeecCCCCC---------HHHHHHHHHHHHhCC
Confidence            3556889999984         45689999988643    569887 699999999         899999999999999


Q ss_pred             CccCCCCCCeeeeeEE--EEEccCCCCcceeEEEEEEEEe--cC-CcCCCCccccceEEEecHHHHHHHH
Q 029829           74 CAEDVPVDEFTPLGRI--LYKAPSDGKWGEHELDYLLFIV--RD-VSVNPNPDEVAEYKYVNREQLKELL  138 (187)
Q Consensus        74 ~~~~~~~~~l~~~~~~--~y~~~~~~~~~e~e~~~vf~~~--~~-~~~~~~~~Ev~~~~Wv~~~el~~~l  138 (187)
                      .+.....     ++.+  .+.......   .....+|.+.  .. ..+.+ ++|+.+++|++++++.+++
T Consensus        71 ~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~E~~~~~W~~~~e~~~~~  131 (153)
T d1xsba_          71 EAGQLTI-----IEGFKRELNYVARNK---PKTVIYWLAEVKDYDVEIRL-SHEHQAYRWLGLEEACQLA  131 (153)
T ss_dssp             CTTTEEE-----CSSCCEEEEEESSSC---EEEEEEEEEEESCTTCCCCC-CTTEEEEEEECHHHHHHHT
T ss_pred             ccceeee-----eccceeeecccccCc---eeEEEEEEEEEeecccccCC-CcceeEEEEEEHHHHHHhc
Confidence            9875322     2211  122211111   2233333332  22 33343 4799999999999999864

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.70  E-value=2.5e-18  Score=127.86  Aligned_cols=133  Identities=14%  Similarity=0.048  Sum_probs=81.8

Q ss_pred             EEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeEE
Q 029829           10 SILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI   89 (187)
Q Consensus        10 ~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~~   89 (187)
                      +++|++ +|+|||+||+     .+|.|.+| ||++++||+         +.+||+||++||||+++....... .+....
T Consensus         5 ~~vi~~-d~kvLl~~r~-----~~~~w~lP-gG~ie~gE~---------~~~aa~RE~~EEtGl~~~~~~~~~-~~~~~~   67 (152)
T d1k2ea_           5 SGVLVE-NGKVLLVKHK-----RLGVYIYP-GGHVEHNET---------PIEAVKREFEEETGIVVEPIGFTY-GIIDEN   67 (152)
T ss_dssp             EEECEE-TTEEEEEECT-----TTCSEECS-EEECCTTCC---------HHHHHHHHHHHHHSEEEEECCCCC-CCBSSS
T ss_pred             EEEEEE-CCEEEEEEEc-----CCCeEECC-eeEEeCCcc---------HHHHHHHHHHHHHCCceeeeEEEE-EEeccc
Confidence            333444 5899999985     35889987 799999999         899999999999999986543210 000000


Q ss_pred             EEEccCCCCcceeEEEEEEEEecCC----------cCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHH
Q 029829           90 LYKAPSDGKWGEHELDYLLFIVRDV----------SVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVD  159 (187)
Q Consensus        90 ~y~~~~~~~~~e~e~~~vf~~~~~~----------~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~  159 (187)
                      .+...    ..  .....+......          ...++.+|+.+++|++++++.++           .+.|..+.++.
T Consensus        68 ~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~-----------~~~~~~~~~l~  130 (152)
T d1k2ea_          68 AVERP----MP--LVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWIDVREIDRI-----------ETFPNVRKVVS  130 (152)
T ss_dssp             EEECC----CC--SEEEEEEEECSSCEEEEEEEEEEEEEEEECCCSCEEEEGGGGGGS-----------CBSTTHHHHHH
T ss_pred             cccCc----ce--EEEEEEEEecCCCceEEEEEeEeeecCCCCcceEEEeEHHHHhhC-----------CCCHHHHHHHH
Confidence            11110    00  011111111100          11245679999999999998753           56788888888


Q ss_pred             HHHHHHHhHhccccccc
Q 029829          160 NFLFKWWDHLEKGTLNE  176 (187)
Q Consensus       160 ~~l~~~~~~~~~~~~~~  176 (187)
                      .++..+...-.-.+|..
T Consensus       131 ~~~~~l~~~~~~~~l~~  147 (152)
T d1k2ea_         131 LALSTLYRLGKISKLAA  147 (152)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCchhhHHH
Confidence            77766655443334433

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=6.3e-16  Score=117.50  Aligned_cols=112  Identities=16%  Similarity=0.172  Sum_probs=74.5

Q ss_pred             eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829            7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL   86 (187)
Q Consensus         7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~   86 (187)
                      .+|+|++++ +|++||.++-... .-...|++| ||++++||+         +.+||+||+.||||+.+.      +..+
T Consensus        25 ~aV~vl~~~-~~~vlLv~q~R~~-~~~~~~elP-~G~ve~gE~---------~~~aA~REl~EEtG~~~~------~~~l   86 (158)
T d1v8ya_          25 PAVAVIALR-EGRMLFVRQMRPA-VGLAPLEIP-AGLIEPGED---------PLEAARRELAEQTGLSGD------LTYL   86 (158)
T ss_dssp             CEEEEEEEE-TTEEEEEECCBTT-TTBCCBBCS-EEECCTTCC---------HHHHHHHHHHHHHSEEEE------EEEE
T ss_pred             CEEEEEEEE-CCEEEEEEeeecC-CCCceEecc-hhhccccCC---------HHHHHHHHHHhhcCCcce------eeee
Confidence            378888877 6898887643211 223678887 699999999         899999999999999764      2345


Q ss_pred             eEEEEEccCCCCcceeEEEEEEEEec--CCcCCCCccccceEEEecHHHHHHHHHhc
Q 029829           87 GRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELLRKA  141 (187)
Q Consensus        87 ~~~~y~~~~~~~~~e~e~~~vf~~~~--~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~  141 (187)
                      +.+ |..+   +.. .+.+++|++..  .....++++|..++.|++++|+.+++.++
T Consensus        87 ~~~-~~~~---g~~-~~~~~~f~a~~~~~~~~~~d~~E~~ev~w~~~~e~~~~i~~g  138 (158)
T d1v8ya_          87 FSY-FVSP---GFT-DEKTHVFLAENLKEVEAHPDEDEAIEVVWMRPEEALERHQRG  138 (158)
T ss_dssp             EEE-ESCT---TTB-CCEEEEEEEEEEEECC--------CEEEEECHHHHHHHHHTT
T ss_pred             cce-ecCC---Ccc-eEEEEEEEEccccccccCCCCCeeEEEEEEEHHHHHHHHHCC
Confidence            543 2222   223 34567777653  24456777899999999999999999986

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.63  E-value=7e-16  Score=121.64  Aligned_cols=113  Identities=15%  Similarity=0.151  Sum_probs=77.2

Q ss_pred             eEEEEEEE--eCC-C--eEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 029829            7 NIFSILGF--VSY-S--VMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD   81 (187)
Q Consensus         7 ~av~v~i~--~~~-g--~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~   81 (187)
                      .+|.++|+  +.+ |  +|||+||+..  .+.|.|.+| ||++++||+         +.+||.||++|||||.+....  
T Consensus        38 v~vd~vi~~~~~~~~~l~VLLv~R~~~--p~~g~W~lP-GG~ve~gEs---------~~eaa~REl~EEtGl~~~~~~--  103 (202)
T d2fmla2          38 LTVDMVLLCYNKEADQLKVLLIQRKGH--PFRNSWALP-GGFVNRNES---------TEDSVLRETKEETGVVISQEN--  103 (202)
T ss_dssp             EEEEEEEEEEETTTTEEEEEEEEECSS--SSTTCEECC-EEECCTTSC---------HHHHHHHHHHHHHCCCCCGGG--
T ss_pred             cEEEEEEEEEecCCCeeEEEEEEecCC--CCCCcEECC-EEeecCCCC---------HHHHhhhhhHhhcCeeeecce--
Confidence            45655554  543 3  7999999753  578999997 799999999         899999999999999886542  


Q ss_pred             CeeeeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHH
Q 029829           82 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKEL  137 (187)
Q Consensus        82 ~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~  137 (187)
                       +..++.  |..+..+..+ +.+..+|.+..........+|+.+++|++++++...
T Consensus       104 -l~~~~~--~~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~e~~~~~Wf~ld~l~~~  155 (202)
T d2fmla2         104 -IEQLHS--FSRPDRDPRG-WVVTVSYLAFIGEEPLIAGDDAKEVHWFNLERHGQH  155 (202)
T ss_dssp             -EEEEEE--ECCTTSSTTS-SEEEEEEEEECCCCCCCCCTTEEEEEEEEEEEETTE
T ss_pred             -eeeeee--cccCCccccc-eEEEEEEEEEeCCCCcCCCcceeeEEEEeHHHCcch
Confidence             333433  3333211111 345555555544333334579999999999988753

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=2.1e-14  Score=113.73  Aligned_cols=115  Identities=17%  Similarity=0.154  Sum_probs=78.7

Q ss_pred             eEEEEEEEeCC-CeEEEEE--ecCCCC--CCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 029829            7 NIFSILGFVSY-SVMSGQQ--RSGTKV--TFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD   81 (187)
Q Consensus         7 ~av~v~i~~~~-g~vLL~r--Rs~~k~--~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~   81 (187)
                      .+|+|++++.+ ++++|.+  |..-..  .-+-+|++| +|++++||+         +++||+|||.||||+.+..    
T Consensus        58 ~~v~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~lElP-AG~id~gE~---------p~~aA~REL~EEtG~~~~~----  123 (209)
T d1g0sa_          58 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMV-AGMIEEGES---------VEDVARREAIEEAGLIVKR----  123 (209)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECE-EEECCTTCC---------HHHHHHHHHHHHHCCCCCC----
T ss_pred             CEEEEEEEEecCCeEEEEEEEeccccccCCCceEEeec-eeecCCCcC---------HHHHHHHHHHhhhcccccc----
Confidence            47888888764 6777754  432111  112367887 699999999         8999999999999998864    


Q ss_pred             CeeeeeEEEEEccCCCCcceeEEEEEEEEecCC----c--CCCCccccceEEEecHHHHHHHHHhc
Q 029829           82 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDV----S--VNPNPDEVAEYKYVNREQLKELLRKA  141 (187)
Q Consensus        82 ~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~----~--~~~~~~Ev~~~~Wv~~~el~~~l~~~  141 (187)
                       +.+++.+ |..+   +.. .+.+++|++..+.    .  ...+++|..++.|++++|+.+++..+
T Consensus       124 -l~~l~~~-~~sp---g~~-~e~~~~f~a~~~~~~~~~~~~~~de~E~iev~~v~~~e~~~~i~~g  183 (209)
T d1g0sa_         124 -TKPVLSF-LASP---GGT-SERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEG  183 (209)
T ss_dssp             -EEEEEEE-ESCT---TTB-CCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHHHHTT
T ss_pred             -eeecccc-ccCC---ccc-CCceEEEEEEEecccccCCCCCCCCCceeEEEEEeHHHHHHHHHcC
Confidence             4667764 3222   333 4567778776421    1  22456788899999999999999986

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=2.4e-15  Score=117.05  Aligned_cols=110  Identities=21%  Similarity=0.127  Sum_probs=77.3

Q ss_pred             EEEEEEEeCCCeEEEEE--ecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829            8 IFSILGFVSYSVMSGQQ--RSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         8 av~v~i~~~~g~vLL~r--Rs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      +|.++... +++++|.|  |...   -...|++| ||++++||+         +.+||+||+.||||+.+..     +.+
T Consensus        50 ~v~vi~~~-~~~vlLvrq~R~~~---~~~~~elP-~G~ie~gE~---------p~~aA~REl~EEtG~~~~~-----~~~  110 (186)
T d1vhza_          50 AVMIVPIV-DDHLILIREYAVGT---ESYELGFS-KGLIDPGES---------VYEAANRELKEEVGFGAND-----LTF  110 (186)
T ss_dssp             EEEEEEEE-TTEEEEEEEEETTT---TEEEEECE-EEECCTTCC---------HHHHHHHHHHHHHSEEEEE-----EEE
T ss_pred             EEEEEEcc-CCEEEEEEeeecCC---CceEeecc-cccCCCCcC---------HHHHHHHHHHHHhcccccc-----cee
Confidence            34444343 67777765  4432   34679997 699999999         8999999999999998864     355


Q ss_pred             eeEEEEEccCCCCcceeEEEEEEEEec--CCcCCCCccccceEEEecHHHHHHHHHhc
Q 029829           86 LGRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELLRKA  141 (187)
Q Consensus        86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~--~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~  141 (187)
                      ++.+ |..+   +.. .+.+++|++..  .....++++|..+..|++++++.+++..+
T Consensus       111 l~~~-~~~~---g~~-~~~~~~~~a~~~~~~~~~~de~E~~~~~~~~~~e~~~~i~~g  163 (186)
T d1vhza_         111 LKKL-SMAP---SYF-SSKMNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLEDP  163 (186)
T ss_dssp             EEEE-ECCT---TTC-CCEEEEEEEEEEEECCCCCCCSSCCCEEEEEGGGGGGGGGCT
T ss_pred             ccee-eccc---ccc-ceEEEEEEEEecccccCCCCCCcEEEEEEEeHHHHHHHHHcC
Confidence            7654 3322   222 23456666543  23456777899999999999999998875

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.58  E-value=4.6e-15  Score=108.31  Aligned_cols=116  Identities=9%  Similarity=-0.004  Sum_probs=76.4

Q ss_pred             EEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeE
Q 029829            9 FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGR   88 (187)
Q Consensus         9 v~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~   88 (187)
                      +..+|.|.+|++||+||...+ .++|+|++| ||+++.+|+          .+++.||+.||+|+++....     .++.
T Consensus         7 ~~~vi~~~~g~iLl~kR~~~~-~~~GlWefP-~g~~e~~~~----------~e~l~rel~ee~gi~v~~~~-----~l~~   69 (127)
T d1rrqa2           7 AVAVLADDEGRVLIRKRDSTG-LLANLWEFP-SCETDGADG----------KEKLEQMVGEQYGLQVELTE-----PIVS   69 (127)
T ss_dssp             EEEEEEESSSEEEEEECCSSS-TTTTCEECC-EEECTTTCC----------HHHHHHTTC----CEEEECS-----CCEE
T ss_pred             EEEEEEECCCEEEEEECCCCC-CCCCceecc-cccccCCCC----------HHHHHHHhhhhcceEEEecc-----cccc
Confidence            444567889999999997654 699999998 588887765          68999999999999987543     3555


Q ss_pred             EEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 029829           89 ILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF  161 (187)
Q Consensus        89 ~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~  161 (187)
                      +...++.   .  .-..++|.+....    +..+..+++|++++++.++           .+....+.+++.|
T Consensus        70 ~~H~fsh---~--~~~~~~~~~~~~~----~~~~~~~~~Wv~~~el~~~-----------~~p~~~~Ki~~~~  122 (127)
T d1rrqa2          70 FEHAFSH---L--VWQLTVFPGRLVH----GGPVEEPYRLAPEDELKAY-----------AFPVSHQRVWREY  122 (127)
T ss_dssp             EEEECSS---E--EEEEEEEEEEEEC----CSCCCTTEEEEEGGGGGGS-----------CCCHHHHHHHHHH
T ss_pred             ceEecCC---e--EEEEEEEEEEECC----CCccccceEEeeHHHHhHC-----------CCChHHHHHHHHH
Confidence            5444321   0  1133456555321    1124467999999999753           4666677777766

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.58  E-value=7.8e-15  Score=115.66  Aligned_cols=114  Identities=11%  Similarity=0.040  Sum_probs=75.1

Q ss_pred             eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCC-CCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829            7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPL-YRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP   85 (187)
Q Consensus         7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve-~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~   85 (187)
                      .+|+|++++++|+|||+++-.. ..-...|++| ||+++ +||+         +++||+||++||||+.+..     +.+
T Consensus        39 ~~V~vl~~~~~~~ilLvrq~R~-~~~~~~welP-aG~ie~~gE~---------~~~aA~REl~EETG~~~~~-----~~~  102 (202)
T d1mqea_          39 GAVAIVAMDDNGNIPMVYQYRH-TYGRRLWELP-AGLLDVAGEP---------PHLTAARELREEVGLQAST-----WQV  102 (202)
T ss_dssp             CEEEEEECCTTSEEEEEEEEET-TTTEEEEECC-EEECCSTTCC---------HHHHHHHHHHHHHCEEEEE-----EEE
T ss_pred             CeEEEEEECCCCEEEEEEeccc-ccCceEEecc-ccccccCCCC---------HHHHHHHHHhhcccccccc-----ceE
Confidence            4788888999999998774211 1123479997 68898 7999         8999999999999998864     456


Q ss_pred             eeEEEEEccCCCCcceeEEEEEEEEec---CCcCC-CCccccceEEEecHHHHHHHHHhc
Q 029829           86 LGRILYKAPSDGKWGEHELDYLLFIVR---DVSVN-PNPDEVAEYKYVNREQLKELLRKA  141 (187)
Q Consensus        86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~---~~~~~-~~~~Ev~~~~Wv~~~el~~~l~~~  141 (187)
                      ++.+. ..   .+.. .+.+++|++..   ..... .+.+|..++.|++++|+.+++..+
T Consensus       103 l~~~~-~~---~g~~-~~~~~~fla~~~~~~~~~~~~~eee~i~v~w~~~~e~~~~i~~G  157 (202)
T d1mqea_         103 LVDLD-TA---PGFS-DESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRVLRG  157 (202)
T ss_dssp             EEEEC-SC---TTTB-CCCEEEEEEEEEEECCC----------CEEEEEHHHHHHHHTTT
T ss_pred             eeeee-cc---CccC-CcEEEEEEEEeccccCCCCCCCccceEEEEEEEHHHHHHHHHcC
Confidence            76531 11   2222 23456666542   22222 233456689999999999999976

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.38  E-value=7.2e-13  Score=103.84  Aligned_cols=113  Identities=16%  Similarity=0.022  Sum_probs=71.6

Q ss_pred             CCCCceEEEEEEEeCCC-----------eEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHH
Q 029829            2 HKCVPNIFSILGFVSYS-----------VMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDE   70 (187)
Q Consensus         2 ~g~~h~av~v~i~~~~g-----------~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE   70 (187)
                      .|..| +++++++.+++           .||+|+|      +.|.|++| ||++++||++        +++||.||+.||
T Consensus        17 ~g~r~-a~~~~~~~~~~~~~~~~~~~~~~vl~~~r------~~g~~~~p-gg~~~~~e~~--------~~~~~~re~~ee   80 (196)
T d1u20a1          17 EGYKH-ACHALLHAPSQAKLFDRVPIRRVLLMMMR------FDGRLGFP-GGFVDTRDIS--------LEEGLKRELEEE   80 (196)
T ss_dssp             SSCEE-EEEEEEEEECCCEETTTEECCEEEEEEEE------TTSCEECS-EEEECTTTSC--------HHHHHHHHHHHH
T ss_pred             CCcce-EEEEEEEcCCCceEEEEecCCcEEEEEEe------cCCcEECC-ccccCCCCCc--------HHHHHHHHHHHH
Confidence            35444 66666765432           4788888      45889997 6999999975        688999999999


Q ss_pred             hCCCccCCCCCCeeeeeEEEEEccCCCCcceeEEEEEEEEecC-----------CcCCCCccccceEEEecHHHHHH
Q 029829           71 LGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD-----------VSVNPNPDEVAEYKYVNREQLKE  136 (187)
Q Consensus        71 ~Gl~~~~~~~~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~-----------~~~~~~~~Ev~~~~Wv~~~el~~  136 (187)
                      ||+.+...++....+.....+  .   ... ..+.++|.+...           ........|+.+..||++.++.+
T Consensus        81 ~g~~~~~~~l~~~~~~~~~~~--~---~~~-~~v~~fy~~~~~~~~l~~~e~~~~~a~~~~~E~~~~~wVPl~~L~d  151 (196)
T d1u20a1          81 LGPALATVEVTEDDYRSSQVR--E---HPQ-KCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRD  151 (196)
T ss_dssp             HCGGGGGCCCCGGGEEEEEEE--C---TTS-CEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTT
T ss_pred             hCccceeEEEEeeEEEEeccC--C---CCC-EEEEEEEEEEcchHHhhhhhhcccccCcCCccccceeEEeHHHhcc
Confidence            999988765533223322111  1   111 223344444421           12233456899999999887653

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=1.2e-11  Score=96.08  Aligned_cols=114  Identities=16%  Similarity=0.098  Sum_probs=73.1

Q ss_pred             eEEEEEEEeC-CCeEEEEE--ecCC---CCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCC
Q 029829            7 NIFSILGFVS-YSVMSGQQ--RSGT---KVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV   80 (187)
Q Consensus         7 ~av~v~i~~~-~g~vLL~r--Rs~~---k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~   80 (187)
                      .+|+|++++. +++++|.|  |..-   +..-.-.|.+ +||.++ +|+         +.+||+|||.||||+.+..   
T Consensus        44 ~aV~Vl~~~~~~~~vllvrQ~R~~v~~~~~~~~~~~e~-paG~~d-~e~---------p~~aA~REL~EEtG~~~~~---  109 (189)
T d1viua_          44 NGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIES-CAGLLD-NDE---------PEVCIRKEAIEETGYEVGE---  109 (189)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECHHHHTTTCSSCEEEEC-EEEECT-TSC---------HHHHHHHHHHHHHSCCCCC---
T ss_pred             CEEEEEEEEcCCCEEEEEEeeccceeeccCCCcceecC-cEEecC-CCC---------HHHHHHHHHHHhhCCcceE---
Confidence            4899999985 46776654  4321   1001122333 456665 666         6899999999999998763   


Q ss_pred             CCeeeeeEEEEEccCCCCcceeEEEEEEEEecC-C----cCCCCccccceEEEecHHHHHHHHHhc
Q 029829           81 DEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD-V----SVNPNPDEVAEYKYVNREQLKELLRKA  141 (187)
Q Consensus        81 ~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~-~----~~~~~~~Ev~~~~Wv~~~el~~~l~~~  141 (187)
                        +.+++.+ |..+   +.. .+.+++|++... .    ....+++|..++.|++++++.+++.++
T Consensus       110 --~~~lg~~-~~sp---G~~-~e~~~~f~a~~~~~~~~~~~~~~e~E~i~v~~~~~~e~~~~i~~g  168 (189)
T d1viua_         110 --VRKLFEL-YMSP---GGV-TELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPFSQALEMIKTG  168 (189)
T ss_dssp             --CEEEEEE-ESCT---TTB-CCEEEEEEEECCTTCC---------CCEEEEEEEHHHHHHHHHHT
T ss_pred             --EEEccee-ecCc---ccc-CceEEEEEEEECCcccccCCCCCCCccEEEEEEEHHHHHHHHHcC
Confidence              4678774 4333   333 456788887642 1    122456788999999999999999986

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=5.8e-11  Score=87.11  Aligned_cols=113  Identities=10%  Similarity=0.044  Sum_probs=71.8

Q ss_pred             CCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeEEEEEccCC
Q 029829           17 YSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSD   96 (187)
Q Consensus        17 ~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~~~y~~~~~   96 (187)
                      +|+|||+||+..+ .++|+|++| +|.++.+|+         ..+++.||..+|.+......   ....++.+...... 
T Consensus        26 ~~~iLl~kR~~~g-~l~GlWefP-~~~~~~~e~---------~~~~~~~~~~~e~~~~~~~~---~~~~~~~v~H~fsH-   90 (142)
T d1x51a1          26 GAQILLVQRPNSG-LLAGLWEFP-SVTWEPSEQ---------LQRKALLQELQRWAGPLPAT---HLRHLGEVVHTFSH-   90 (142)
T ss_dssp             SEEEEEEECCCCS-TTCSCEECC-EEECCSSHH---------HHHHHHHHHHHHHSCCCCST---TCEECCCBCCBCSS-
T ss_pred             CCEEEEEECCCCC-CCCcceeee-EeeccCCcc---------hhHHHHHHHHHHhccCccee---eeeeeccceeccCC-
Confidence            6799999997664 699999998 688999987         66777666555555433321   12334433222211 


Q ss_pred             CCcceeEEEEEEEEecC-CcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 029829           97 GKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF  161 (187)
Q Consensus        97 ~~~~e~e~~~vf~~~~~-~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~  161 (187)
                        .  +-..++|.+... ..+  ...|..+++|++++++.++           .+..-.+.+++.|
T Consensus        91 --~--~~~~~v~~~~~~~~~~--~~~~~~~~~W~~~~el~~~-----------~lp~~~~Kil~~~  139 (142)
T d1x51a1          91 --I--KLTYQVYGLALEGQTP--VTTVPPGARWLTQEEFHTA-----------AVSTAMKKVFRVY  139 (142)
T ss_dssp             --C--EEEEEEEEEECSSCCC--CCCCCTTEEEEEHHHHHHS-----------CCCHHHHHHHHHH
T ss_pred             --c--ceEEEEEEEEEeCCCc--ccccCccCEEeeHHHcccc-----------CCCHHHHHHHHHH
Confidence              0  123466666653 222  2357789999999999864           4666667766655

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.3e-10  Score=95.92  Aligned_cols=45  Identities=11%  Similarity=0.030  Sum_probs=38.9

Q ss_pred             eEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 029829           19 VMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV   78 (187)
Q Consensus        19 ~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~   78 (187)
                      ++|+++|..     .|.|.+| ||++++||+         +.+||+||+.||||+.+...
T Consensus       140 qvLlIkR~d-----~g~WaLP-GG~Vd~GEs---------~~~Aa~REl~EETGl~~~~~  184 (292)
T d1q33a_         140 QFVAIKRKD-----CGEWAIP-GGMVDPGEK---------ISATLKREFGEEALNSLQKT  184 (292)
T ss_dssp             EEEEEECTT-----TCSEECC-CEECCTTCC---------HHHHHHHHHHHHHSCGGGSC
T ss_pred             EEEEEEecC-----CCcEeCC-cccCCCCCC---------HHHHHHHHHHHHhCcccccc
Confidence            488888864     3789997 699999999         89999999999999988754