Citrus Sinensis ID: 029840

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
Protein Sequence
MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccHHHHHHHHccccccEEEEEcEEEccEEEEEcccEEEEEEEEcHHHHHHHHHHccEEEcHHHHHHHccccccEEEEEccccHHHHHHHHcccccccccccccccccccccHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccEHHccccccccEccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHccccccEEEEEEEEccccEEEEccccEEEEEEccHHHHHHHHHcccEEEEHHHHHHcccccccEEEEEccccHHHHHHHccccccccccccccEEccccccEHHcccccccccccc
Coil and Loop (DISEMBL)
mgidliaggkskkskrtapksnDIYLKLLVKLYRFLVrrtdsnfdKVILKRLFMskvnkppmslsRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKaggecltfdqlalraplgqntvllrgpkNAREAVkhfgpapgvphshtkpyvrskgrkferargkrnsrgfrv
Flexible Loop (DISEMBL)
mgidliaggkskkskrtapksndiyLKLLVKLYRFLvrrtdsnfdkvilkrlfmskvnkppmslSRLTkfmkgkedkIAVVvgtvtddirvyevpalkvtalrFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHfgpapgvphshtkpyvrskgrkferargkrnsrgfrv
Low Complexity Region (SEG)
MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV
Disordered region (IsUnstruct)
**********************DIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNK****LSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLR************************************************
Disordered Region (DISOPRED)
MGID*******************IYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGV******************************
Disordered Region (DISEMBL)
******************PKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRS*******************
Disordered Region (DISPRO)
***********KKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGV*HS***************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	187	2.2.26 [Sep-21-2011]
P42791	187	60S ribosomal protein L18	yes	no	1.0	1.0	0.860	6e-92
Q940B0	187	60S ribosomal protein L18	yes	no	1.0	1.0	0.860	6e-92
O65729	183	60S ribosomal protein L18	N/A	no	0.978	1.0	0.858	2e-87
O22254	188	Putative 60S ribosomal pr	no	no	1.0	0.994	0.776	1e-80
Q4GXG7	188	60S ribosomal protein L18	N/A	no	0.989	0.984	0.664	8e-67
Q0PXY6	188	60S ribosomal protein L18	N/A	no	0.989	0.984	0.627	4e-66
Q56FG8	188	60S ribosomal protein L18	N/A	no	0.989	0.984	0.648	8e-66
Q9VS34	188	60S ribosomal protein L18	yes	no	0.989	0.984	0.643	5e-64
Q4PM04	188	60S ribosomal protein L18	N/A	no	0.925	0.920	0.664	9e-63
Q90YV0	188	60S ribosomal protein L18	N/A	no	0.925	0.920	0.664	3e-62

>sp|P42791|RL182_ARATH 60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=1 SV=2

 Score =  336 bits (861), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 161/187 (86%), Positives = 179/187 (95%)

Query: 1   MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
           MGIDLIAGGKSKK+KRTAPKS+D+YLKL VKLYRFLVRRT+S F+ VILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 61  PMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL +FM GKEDKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSH+KPYVR+KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query: 181 NSRGFRV 187
            SRGF+V
Sbjct: 181 KSRGFKV 187

Arabidopsis thaliana (taxid: 3702)

>sp|Q940B0|RL183_ARATH 60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1

 Score =  336 bits (861), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 161/187 (86%), Positives = 180/187 (96%)

Query: 1   MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
           MGIDLIAGGKSKK+KRTAPKS+D+YLKLLVKLYRFLVRR++SNF+ VILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 61  PMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL +FM GK+DKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHS+TKPYVR KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query: 181 NSRGFRV 187
            SRGF+V
Sbjct: 181 KSRGFKV 187

Arabidopsis thaliana (taxid: 3702)

>sp|O65729|RL18_CICAR 60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1

 Score =  321 bits (822), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 158/184 (85%), Positives = 173/184 (94%), Gaps = 1/184 (0%)

Query: 4   DLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMS 63
           DL AGGK+KK+KRT+PKSNDIYLKLLVKLYRFLVRRTDSNF+ VILKRLFMSKVN+PP+S
Sbjct: 1   DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLS 60

Query: 64  LSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFD 123
           LSRL K+M+GKE KI VVVG VTDDIRVY+VP +KVTAL+FTETARARI+KAGGECLTFD
Sbjct: 61  LSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFD 120

Query: 124 QLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSR 183
           QLALR PL  +TVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE+ARG+R SR
Sbjct: 121 QLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSR 179

Query: 184 GFRV 187
           GFRV
Sbjct: 180 GFRV 183

Cicer arietinum (taxid: 3827)

>sp|O22254|RL181_ARATH Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3

 Score =  298 bits (764), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 146/188 (77%), Positives = 165/188 (87%), Gaps = 1/188 (0%)

Query: 1   MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
           MGIDLIAGGKSKK+KRT PKS+D+YLKLLVK  R+LVRRT+S F+ VILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKA 60

Query: 61  PMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL ++M GK+ KIAV+VGTVTDD+R+ +VPAL VTALRFTE+ARARI KAGGECL
Sbjct: 61  PLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECL 120

Query: 121 TFDQLALRAP-LGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGK 179
           TFDQLAL  P   +NTVLLRGPKN REAVKHFGPAPGVPHSHTKPYVR  G+K E ARG+
Sbjct: 121 TFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGR 180

Query: 180 RNSRGFRV 187
           R SRGF+V
Sbjct: 181 RRSRGFKV 188

Arabidopsis thaliana (taxid: 3702)

>sp|Q4GXG7|RL18_TIMBA 60S ribosomal protein L18 OS=Timarcha balearica GN=RpL18 PE=2 SV=1

 Score =  252 bits (644), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 125/188 (66%), Positives = 153/188 (81%), Gaps = 3/188 (1%)

Query: 1   MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
           MGID I     +K +RT PKS D+YL+LLVKLYR+L RRT + F+K+ILKRLFMSK+ +P
Sbjct: 1   MGID-INHKYDRKVRRTEPKSQDVYLRLLVKLYRYLARRTGAKFNKIILKRLFMSKIYRP 59

Query: 61  PMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGE 118
           P+SLS++ +FMK  G+E   AV+VGTVTDD R++E+P L + ALR T+TARA I KAGGE
Sbjct: 60  PISLSKVVRFMKKPGRELLTAVIVGTVTDDSRIFEIPKLSICALRVTQTARAGILKAGGE 119

Query: 119 CLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARG 178
            +TFDQLALR+P G  TVLL+G +NAREAVKHFGPAPGVPHSH KP VRSKGRKFERARG
Sbjct: 120 VITFDQLALRSPTGSKTVLLQGKRNAREAVKHFGPAPGVPHSHAKPLVRSKGRKFERARG 179

Query: 179 KRNSRGFR 186
           +R S G++
Sbjct: 180 RRRSCGYK 187

Timarcha balearica (taxid: 79517)

>sp|Q0PXY6|RL18_DIACI 60S ribosomal protein L18 OS=Diaphorina citri GN=RpL18 PE=2 SV=1

 Score =  250 bits (638), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 118/188 (62%), Positives = 155/188 (82%), Gaps = 3/188 (1%)

Query: 1   MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
           MG+D I     ++ +RT PKS D+YL+LLVKLYRFL RRT+S F+K+ILKRLFMSK+N+P
Sbjct: 1   MGVD-ICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRP 59

Query: 61  PMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGE 118
           PM++S++ +FMK   +E ++AV+VGT+ DD R++ +P L V ALR T+ AR+RI KAGGE
Sbjct: 60  PMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTVCALRVTDKARSRILKAGGE 119

Query: 119 CLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARG 178
            +TFDQLALRAP G+NTVL++G +  REA KHFGPAPGVPHSHTK +VRSKGR+FERARG
Sbjct: 120 IITFDQLALRAPTGKNTVLMQGKRTGREANKHFGPAPGVPHSHTKAHVRSKGRQFERARG 179

Query: 179 KRNSRGFR 186
           +R S+G++
Sbjct: 180 RRTSKGYK 187

Diaphorina citri (taxid: 121845)

>sp|Q56FG8|RL18_LYSTE 60S ribosomal protein L18 OS=Lysiphlebus testaceipes GN=RpL18 PE=2 SV=1

 Score =  249 bits (636), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 122/188 (64%), Positives = 153/188 (81%), Gaps = 3/188 (1%)

Query: 1   MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
           MGID I     +K +RT P+S DIYL+LLVK+YRFL RRT+S F ++ILKRLFMS++N P
Sbjct: 1   MGID-INHKYDRKVRRTEPRSQDIYLRLLVKVYRFLARRTNSKFSRIILKRLFMSRINLP 59

Query: 61  PMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGE 118
           P+SL+R+ +FMK   +++ IAVVVGT+TDD R++E+P LKV ALR TE AR RI KAGGE
Sbjct: 60  PISLARVCRFMKKESRKNSIAVVVGTITDDARIFEIPKLKVCALRITEKARGRILKAGGE 119

Query: 119 CLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARG 178
            +TF++LA  +P G  TVL++G +NAREAVKHFGPAPGVPHSHTKP VRSKGRKFERARG
Sbjct: 120 IITFEKLAEISPTGNKTVLMQGRRNAREAVKHFGPAPGVPHSHTKPLVRSKGRKFERARG 179

Query: 179 KRNSRGFR 186
           +R S G++
Sbjct: 180 RRKSCGYK 187

Lysiphlebus testaceipes (taxid: 77504)

>sp|Q9VS34|RL18_DROME 60S ribosomal protein L18 OS=Drosophila melanogaster GN=RpL18 PE=1 SV=1

 Score =  243 bits (620), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 121/188 (64%), Positives = 148/188 (78%), Gaps = 3/188 (1%)

Query: 1   MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
           MGID I     +K +RT PKS D+YL+LLVKLYRFL RRT+  F+++ILKRLFMSK+N+P
Sbjct: 1   MGID-INHKYDRKVRRTEPKSQDVYLRLLVKLYRFLQRRTNKKFNRIILKRLFMSKINRP 59

Query: 61  PMSLSRLTKFMKG--KEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGE 118
           P+SL R+ +F K   + +   VVVGTVTDD R+  VP L V AL  T+TAR RI KAGGE
Sbjct: 60  PLSLQRIARFFKAANQPESTIVVVGTVTDDARLLVVPKLTVCALHVTQTARERILKAGGE 119

Query: 119 CLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARG 178
            LTFDQLALR+P G+NT+LL+G + AR A KHFG APGVPHSHT+PYVRSKGRKFERARG
Sbjct: 120 VLTFDQLALRSPTGKNTLLLQGRRTARTACKHFGKAPGVPHSHTRPYVRSKGRKFERARG 179

Query: 179 KRNSRGFR 186
           +R+S G++
Sbjct: 180 RRSSCGYK 187

Drosophila melanogaster (taxid: 7227)

>sp|Q4PM04|RL18_IXOSC 60S ribosomal protein L18 OS=Ixodes scapularis GN=RpL18 PE=2 SV=1

 Score =  239 bits (609), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 117/176 (66%), Positives = 148/176 (84%), Gaps = 3/176 (1%)

Query: 1   MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
           MGID I     +K  R  PKS ++YL LLVK+YRFL RR+ + F++++LKRLFMS++NKP
Sbjct: 1   MGID-INHKYDRKVVRRRPKSENVYLGLLVKVYRFLARRSGAKFNRIVLKRLFMSRINKP 59

Query: 61  PMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGE 118
            +SL+R+T+FMK  G+E+ IAVVVGTVTDD+R+Y+VP L++ ALR TE ARARI KAGGE
Sbjct: 60  VISLARVTRFMKKPGRENLIAVVVGTVTDDLRLYDVPKLRLCALRVTERARARILKAGGE 119

Query: 119 CLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 174
            LTFDQLA++AP G+ TVL++GP+N+REA +HFGPAPGVPHSHTKPYVRSKGRKFE
Sbjct: 120 ILTFDQLAVQAPKGKGTVLMQGPRNSREACRHFGPAPGVPHSHTKPYVRSKGRKFE 175

Ixodes scapularis (taxid: 6945)

>sp|Q90YV0|RL18_ICTPU 60S ribosomal protein L18 OS=Ictalurus punctatus GN=rpl18 PE=2 SV=3

 Score =  237 bits (605), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 117/176 (66%), Positives = 140/176 (79%), Gaps = 3/176 (1%)

Query: 1   MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
           MG+D I   K +K  RT PKS DIYL+LLVKLYRFL RR+D+ F+KV+LKRLFMSK N+P
Sbjct: 1   MGVD-IRHNKDRKVHRTEPKSQDIYLRLLVKLYRFLARRSDAPFNKVVLKRLFMSKTNRP 59

Query: 61  PMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGE 118
           P++LSRL + MK  G+E+KIAVVVGT+TDD+R+  +P LKV ALR T  AR RI KAGG+
Sbjct: 60  PLALSRLIRKMKLQGRENKIAVVVGTITDDVRILNIPKLKVCALRVTAGARRRILKAGGQ 119

Query: 119 CLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 174
            +TFDQLA+  P GQ TVLL GP+ ARE  +HFG APG PHSHTKPY+RSKGRKFE
Sbjct: 120 VMTFDQLAVTTPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYIRSKGRKFE 175

Ictalurus punctatus (taxid: 7998)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
351725505	187	uncharacterized protein LOC100499789 [Gl	1.0	1.0	0.935	6e-96
356572966	187	PREDICTED: 60S ribosomal protein L18-3-l	1.0	1.0	0.930	6e-96
449454059	187	PREDICTED: 60S ribosomal protein L18-3-l	1.0	1.0	0.919	2e-95
224064456	187	predicted protein [Populus trichocarpa]	1.0	1.0	0.919	4e-95
356576811	187	PREDICTED: 60S ribosomal protein L18-3-l	1.0	1.0	0.925	4e-95
351723391	187	uncharacterized protein LOC100500164 [Gl	1.0	1.0	0.925	7e-95
449435988	389	PREDICTED: uncharacterized protein LOC10	1.0	0.480	0.909	1e-94
388523003	187	unknown [Lotus japonicus]	1.0	1.0	0.919	2e-94
351734388	187	uncharacterized protein LOC100306301 [Gl	1.0	1.0	0.914	2e-94
147839223	187	hypothetical protein VITISV_022459 [Viti	1.0	1.0	0.914	9e-94

>gi|351725505|ref|NP_001236071.1| uncharacterized protein LOC100499789 [Glycine max] gi|255626631|gb|ACU13660.1| unknown [Glycine max]

 Score =  355 bits (910), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 175/187 (93%), Positives = 181/187 (96%)

Query: 1   MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
           MGIDL AGGKSKK+KRTAPKSNDIYLKLLVKLYRFLVRRT SNF+ VILKRLFMSKVNKP
Sbjct: 1   MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL ++ KGKEDKIAVVVG VTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLIRYAKGKEDKIAVVVGAVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVR+KGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180

Query: 181 NSRGFRV 187
           NSRGFRV
Sbjct: 181 NSRGFRV 187

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572966|ref|XP_003554636.1| PREDICTED: 60S ribosomal protein L18-3-like [Glycine max]

 Score =  355 bits (910), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 174/187 (93%), Positives = 182/187 (97%)

Query: 1   MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
           MGIDL AGGKSKK+KRTAPKSNDIYLKLLVKLYRFLVRRTDSNF+ VILKRLFMSKVNKP
Sbjct: 1   MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNKP 60

Query: 61  PMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL K+ KGKEDKIAVVVGTVTDDIRVYEVPALK+TAL+FTE ARARIEKAGGECL
Sbjct: 61  PISLSRLIKYTKGKEDKIAVVVGTVTDDIRVYEVPALKITALKFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVR+KGRKFERARG+R
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGRR 180

Query: 181 NSRGFRV 187
           NSRGFRV
Sbjct: 181 NSRGFRV 187

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454059|ref|XP_004144773.1| PREDICTED: 60S ribosomal protein L18-3-like [Cucumis sativus] gi|449490874|ref|XP_004158733.1| PREDICTED: 60S ribosomal protein L18-3-like [Cucumis sativus]

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 172/187 (91%), Positives = 182/187 (97%)

Query: 1   MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
           MGIDL+AGGKSKK+KRTAPKS+DIYLKLLVKLYRFLVRRT SNF+ VILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL K+M GKE +IAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKYMNGKEGRIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGFRV 187
           NSRG+RV
Sbjct: 181 NSRGYRV 187

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064456|ref|XP_002301485.1| predicted protein [Populus trichocarpa] gi|222843211|gb|EEE80758.1| predicted protein [Populus trichocarpa]

 Score =  352 bits (903), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 172/187 (91%), Positives = 181/187 (96%)

Query: 1   MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
           MGIDL AGGKSKK+KRTAPKS+DIYLKLLVKLYRFLVRRT S F+ VILKRLFMSK+NKP
Sbjct: 1   MGIDLKAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKINKP 60

Query: 61  PMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL  FMKGKEDKIAVVVGT+TDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLITFMKGKEDKIAVVVGTITDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPY+RSKGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYIRSKGRKFEKARGKR 180

Query: 181 NSRGFRV 187
           NS+GFRV
Sbjct: 181 NSKGFRV 187

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576811|ref|XP_003556523.1| PREDICTED: 60S ribosomal protein L18-3-like [Glycine max]

 Score =  352 bits (903), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 173/187 (92%), Positives = 181/187 (96%)

Query: 1   MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
           MGIDL AGGKSKK+KRTAPKSNDIYLKLLVKLYRFLVRRT SNF+ VILKRLFMSKVNKP
Sbjct: 1   MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL K+ KGKEDKIAVVVG++TDDIRVYEVP LKVTALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLIKYTKGKEDKIAVVVGSITDDIRVYEVPPLKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVR+KGRKFERARG+R
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGRR 180

Query: 181 NSRGFRV 187
           NSRGFRV
Sbjct: 181 NSRGFRV 187

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723391|ref|NP_001237789.1| uncharacterized protein LOC100500164 [Glycine max] gi|255629506|gb|ACU15099.1| unknown [Glycine max]

 Score =  351 bits (901), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 173/187 (92%), Positives = 180/187 (96%)

Query: 1   MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
           MGIDL AGGKSKK+KRTAPKSNDIYLKLLVKLYRFLVRRT S F+ VILKRLFMSKVNKP
Sbjct: 1   MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKVNKP 60

Query: 61  PMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL K+ KGKEDKIAVVVG +TDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLIKYTKGKEDKIAVVVGNITDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVR+KGRKFERARG+R
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGRR 180

Query: 181 NSRGFRV 187
           NSRGFRV
Sbjct: 181 NSRGFRV 187

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435988|ref|XP_004135776.1| PREDICTED: uncharacterized protein LOC101207642 [Cucumis sativus] gi|449524956|ref|XP_004169487.1| PREDICTED: uncharacterized protein LOC101228164 [Cucumis sativus]

 Score =  350 bits (899), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 170/187 (90%), Positives = 180/187 (96%)

Query: 1   MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
           MGIDL+AGGKSKK+KR APKS+DIYLKLLVKLYRFLVRRT SNF+ VILKRLFMSKVNKP
Sbjct: 203 MGIDLVAGGKSKKTKRVAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 262

Query: 61  PMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL +F KGKE KIAVVVGT+TDDIRVYEVPALKV ALRFTETARARIEKAGGECL
Sbjct: 263 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 322

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSH+KPYVRSKGRKFERARGKR
Sbjct: 323 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 382

Query: 181 NSRGFRV 187
           NSRG+RV
Sbjct: 383 NSRGYRV 389

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388523003|gb|AFK49563.1| unknown [Lotus japonicus]

 Score =  350 bits (897), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 172/187 (91%), Positives = 179/187 (95%)

Query: 1   MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
           MGIDL AGGKSKK+KR APKSNDIYLKLLVKLYRFLVRRT SNF+ VILKRLFMSKVNKP
Sbjct: 1   MGIDLKAGGKSKKTKRIAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL K+ KGKEDK+ V+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKYAKGKEDKVVVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEMARGKR 180

Query: 181 NSRGFRV 187
           NS+GFRV
Sbjct: 181 NSKGFRV 187

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351734388|ref|NP_001236701.1| uncharacterized protein LOC100306301 [Glycine max] gi|255628147|gb|ACU14418.1| unknown [Glycine max]

 Score =  350 bits (897), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 171/187 (91%), Positives = 181/187 (96%)

Query: 1   MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
           MGIDL AGGKSKK+KRTAPKS+DIYLKLLVKLYRFLVRRT SNF+ V+LKRLFMSKVNKP
Sbjct: 1   MGIDLKAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKP 60

Query: 61  PMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL ++ KGKEDKIAVVVG VTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLIRYTKGKEDKIAVVVGAVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVR+KGRKFERARG++
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGRK 180

Query: 181 NSRGFRV 187
           NSRGFRV
Sbjct: 181 NSRGFRV 187

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147839223|emb|CAN65685.1| hypothetical protein VITISV_022459 [Vitis vinifera]

 Score =  347 bits (891), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 171/187 (91%), Positives = 180/187 (96%)

Query: 1   MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
           MGIDL+AGGKSKK+KRTAPKS+DIYLKLLVKLYRFLVRRT S F+ VILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKVNKP 60

Query: 61  PMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL ++M GKE KIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLVRYMGGKEGKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKN+REAVKHFG APGVPHSHTKPYVRSKGRKFERARG+R
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGKAPGVPHSHTKPYVRSKGRKFERARGRR 180

Query: 181 NSRGFRV 187
           NSRGFRV
Sbjct: 181 NSRGFRV 187

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
TAIR|locus:2078077	187	RPL18 "ribosomal protein L18"	1.0	1.0	0.860	3.4e-84
TAIR|locus:2143330	187	AT5G27850 [Arabidopsis thalian	1.0	1.0	0.860	3.4e-84
MGI|MGI:98003	188	Rpl18 "ribosomal protein L18"	0.989	0.984	0.664	8.8e-63
RGD|621182	188	Rpl18 "ribosomal protein L18"	0.989	0.984	0.659	1.1e-62
UNIPROTKB|Q07020	188	RPL18 "60S ribosomal protein L	0.989	0.984	0.664	3e-62
UNIPROTKB|D0VWQ3	188	RPL18 "Ribosomal protein L18"	0.989	0.984	0.664	3.8e-62
UNIPROTKB|Q5E973	188	RPL18 "60S ribosomal protein L	0.989	0.984	0.664	6.2e-62
UNIPROTKB|I3L6F1	188	RPL18 "60S ribosomal protein L	0.989	0.984	0.664	6.2e-62
UNIPROTKB|J3QQ67	190	RPL18 "60S ribosomal protein L	0.983	0.968	0.663	1e-61
ASPGD|ASPL0000006713	184	AN5800 [Emericella nidulans (t	0.978	0.994	0.670	1.9e-60

TAIR|locus:2078077 RPL18 "ribosomal protein L18" [Arabidopsis thaliana (taxid:3702)]

 Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
 Identities = 161/187 (86%), Positives = 179/187 (95%)

Query:     1 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
             MGIDLIAGGKSKK+KRTAPKS+D+YLKL VKLYRFLVRRT+S F+ VILKRLFMSKVNK 
Sbjct:     1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query:    61 PMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
             P+SLSRL +FM GKEDKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct:    61 PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query:   121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
             TFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSH+KPYVR+KGRKFE+ARGKR
Sbjct:   121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query:   181 NSRGFRV 187
              SRGF+V
Sbjct:   181 KSRGFKV 187

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS;TAS

GO:0015934 "large ribosomal subunit" evidence=ISS;IDA;TAS

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

TAIR|locus:2143330 AT5G27850 [Arabidopsis thaliana (taxid:3702)]

 Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
 Identities = 161/187 (86%), Positives = 180/187 (96%)

Query:     1 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
             MGIDLIAGGKSKK+KRTAPKS+D+YLKLLVKLYRFLVRR++SNF+ VILKRLFMSKVNK 
Sbjct:     1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query:    61 PMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
             P+SLSRL +FM GK+DKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct:    61 PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query:   121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
             TFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHS+TKPYVR KGRKFE+ARGKR
Sbjct:   121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query:   181 NSRGFRV 187
              SRGF+V
Sbjct:   181 KSRGFKV 187

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

MGI|MGI:98003 Rpl18 "ribosomal protein L18" [Mus musculus (taxid:10090)]

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 125/188 (66%), Positives = 152/188 (80%)

Query:     1 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
             MG+D I   K +K +R  PKS DIYL+LLVKLYRFL RRT+S F++V+LKRLFMS+ N+P
Sbjct:     1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRP 59

Query:    61 PMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGE 118
             P+SLSR+ + MK  G+E+K AVVVGTVTDD+R+ EVP LKV ALR +  AR+RI KAGG+
Sbjct:    60 PLSLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGK 119

Query:   119 CLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARG 178
              LTFDQLAL +P G+ TVLL GP+  RE  +HFG APG PHSHTKPYVRSKGRKFERARG
Sbjct:   120 ILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARG 179

Query:   179 KRNSRGFR 186
             +R SRG++
Sbjct:   180 RRASRGYK 187

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|621182 Rpl18 "ribosomal protein L18" [Rattus norvegicus (taxid:10116)]

 Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
 Identities = 124/188 (65%), Positives = 152/188 (80%)

Query:     1 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
             MG+D I   K +K +R  PKS DIYL+LLVKLYRFL RRT+S F++V+LKRLFMS+ N+P
Sbjct:     1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRP 59

Query:    61 PMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGE 118
             P+SLSR+ + MK  G+E+K AVVVGT+TDD+R+ EVP LKV ALR +  AR+RI KAGG+
Sbjct:    60 PLSLSRMIRKMKLPGRENKTAVVVGTITDDVRILEVPKLKVCALRVSSRARSRILKAGGK 119

Query:   119 CLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARG 178
              LTFDQLAL +P G+ TVLL GP+  RE  +HFG APG PHSHTKPYVRSKGRKFERARG
Sbjct:   120 ILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARG 179

Query:   179 KRNSRGFR 186
             +R SRG++
Sbjct:   180 RRASRGYK 187

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

UNIPROTKB|Q07020 RPL18 "60S ribosomal protein L18" [Homo sapiens (taxid:9606)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 125/188 (66%), Positives = 151/188 (80%)

Query:     1 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
             MG+D I   K +K +R  PKS DIYL+LLVKLYRFL RRT+S F++V+LKRLFMS+ N+P
Sbjct:     1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRP 59

Query:    61 PMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGE 118
             P+SLSR+ + MK  G+E+K AVVVGT+TDD+RV EVP LKV ALR T  AR+RI +AGG+
Sbjct:    60 PLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGK 119

Query:   119 CLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARG 178
              LTFDQLAL +P G  TVLL GP+  RE  +HFG APG PHSHTKPYVRSKGRKFERARG
Sbjct:   120 ILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARG 179

Query:   179 KRNSRGFR 186
             +R SRG++
Sbjct:   180 RRASRGYK 187

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|D0VWQ3 RPL18 "Ribosomal protein L18" [Canis lupus familiaris (taxid:9615)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 125/188 (66%), Positives = 151/188 (80%)

Query:     1 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
             MG+D I   K +K +R  PKS DIYL+LLVKLYRFL RRT+S F++V+LKRLFMS+ N+P
Sbjct:     1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRP 59

Query:    61 PMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGE 118
             P+SLSR+ + MK  G+E+K AVVVGT+TDD+RV EVP LKV ALR +  AR+RI KAGG+
Sbjct:    60 PLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVSSRARSRILKAGGK 119

Query:   119 CLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARG 178
              LTFDQLAL +P G  TVLL GP+  RE  +HFG APG PHSHTKPYVRSKGRKFERARG
Sbjct:   120 ILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARG 179

Query:   179 KRNSRGFR 186
             +R SRG++
Sbjct:   180 RRASRGYK 187

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q5E973 RPL18 "60S ribosomal protein L18" [Bos taurus (taxid:9913)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 125/188 (66%), Positives = 150/188 (79%)

Query:     1 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
             MG+D I   K +K +R  PKS DIYL+LLVKLYRFL RRT+S F++V+LKRLFMS+ N+P
Sbjct:     1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRP 59

Query:    61 PMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGE 118
             P+SLSR+ + MK  G+E K AVVVGT+TDD+RV EVP LKV ALR +  AR+RI KAGG+
Sbjct:    60 PLSLSRMIRKMKLPGREGKTAVVVGTITDDVRVQEVPKLKVCALRVSSRARSRILKAGGK 119

Query:   119 CLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARG 178
              LTFDQLAL +P G  TVLL GP+  RE  +HFG APG PHSHTKPYVRSKGRKFERARG
Sbjct:   120 ILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARG 179

Query:   179 KRNSRGFR 186
             +R SRG++
Sbjct:   180 RRASRGYK 187

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|I3L6F1 RPL18 "60S ribosomal protein L18" [Sus scrofa (taxid:9823)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 125/188 (66%), Positives = 150/188 (79%)

Query:     1 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
             MG+D I   K +K +R  PKS DIYL+LLVKLYRFL RRT+S F++V+LKRLFMS+ N+P
Sbjct:     1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRP 59

Query:    61 PMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGE 118
             P+SLSR+ + MK  G+E K AVVVGT+TDD+RV EVP LKV ALR +  AR+RI KAGG+
Sbjct:    60 PLSLSRMIRKMKLPGREGKTAVVVGTITDDVRVQEVPKLKVCALRVSSRARSRILKAGGK 119

Query:   119 CLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARG 178
              LTFDQLAL +P G  TVLL GP+  RE  +HFG APG PHSHTKPYVRSKGRKFERARG
Sbjct:   120 ILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARG 179

Query:   179 KRNSRGFR 186
             +R SRG++
Sbjct:   180 RRASRGYK 187

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|J3QQ67 RPL18 "60S ribosomal protein L18" [Homo sapiens (taxid:9606)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 124/187 (66%), Positives = 150/187 (80%)

Query:     2 GIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPP 61
             G+D I   K +K +R  PKS DIYL+LLVKLYRFL RRT+S F++V+LKRLFMS+ N+PP
Sbjct:     4 GVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 62

Query:    62 MSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGEC 119
             +SLSR+ + MK  G+E+K AVVVGT+TDD+RV EVP LKV ALR T  AR+RI +AGG+ 
Sbjct:    63 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 122

Query:   120 LTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGK 179
             LTFDQLAL +P G  TVLL GP+  RE  +HFG APG PHSHTKPYVRSKGRKFERARG+
Sbjct:   123 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGR 182

Query:   180 RNSRGFR 186
             R SRG++
Sbjct:   183 RASRGYK 189

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

ASPGD|ASPL0000006713 AN5800 [Emericella nidulans (taxid:162425)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 126/188 (67%), Positives = 149/188 (79%)

Query:     1 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
             MGIDL      + + R APKS ++YL++LVKLYRFL RRT+SNF+KV+L+RLFMS++N+P
Sbjct:     1 MGIDLDRH-HVRSTHRKAPKSENVYLQVLVKLYRFLARRTESNFNKVVLRRLFMSRINRP 59

Query:    61 PMSLSRL-TKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGEC 119
             P+SLSR+ +   +  + K  VV+GTVTDD R+  VP L V ALRFT TARARIEKAGGE 
Sbjct:    60 PVSLSRIASNVTESHQGKTIVVIGTVTDDNRLLTVPKLSVAALRFTATARARIEKAGGET 119

Query:   120 LTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGK 179
             LT DQLALRAP G NT+LLRGPKNAREAVKHFG  P   H H KPYVRSKGRKFERARG+
Sbjct:   120 LTLDQLALRAPTGANTLLLRGPKNAREAVKHFGFGP---HKHKKPYVRSKGRKFERARGR 176

Query:   180 RNSRGFRV 187
             R SRGF+V
Sbjct:   177 RRSRGFKV 184

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P35980	RL18_MOUSE	No assigned EC number	0.6647	0.9251	0.9202	yes	no
Q4GXG7	RL18_TIMBA	No assigned EC number	0.6648	0.9893	0.9840	N/A	no
Q4R5H8	RL18_MACFA	No assigned EC number	0.6647	0.9251	0.9202	N/A	no
O45946	RL18_CAEEL	No assigned EC number	0.6022	0.9251	0.9202	yes	no
P69090	RL18_OREMO	No assigned EC number	0.6382	0.9893	0.9840	N/A	no
P69091	RL18_ORENI	No assigned EC number	0.6382	0.9893	0.9840	yes	no
Q4PM04	RL18_IXOSC	No assigned EC number	0.6647	0.9251	0.9202	N/A	no
Q54VZ4	RL18_DICDI	No assigned EC number	0.5808	0.8877	0.9171	yes	no
A3F4S0	RL18_TAEAS	No assigned EC number	0.6321	0.9144	0.95	N/A	no
Q4UFD5	RL18_THEAN	No assigned EC number	0.5721	0.9732	0.9891	yes	no
O22254	RL181_ARATH	No assigned EC number	0.7765	1.0	0.9946	no	no
P02412	RL18B_XENLA	No assigned EC number	0.6420	0.9251	0.9202	N/A	no
D0VWQ3	RL18_CANFA	No assigned EC number	0.6647	0.9251	0.9202	yes	no
Q4DZP2	RL18_TRYCC	No assigned EC number	0.5222	0.9144	0.8860	N/A	no
Q90YV0	RL18_ICTPU	No assigned EC number	0.6647	0.9251	0.9202	N/A	no
Q5E973	RL18_BOVIN	No assigned EC number	0.6647	0.9251	0.9202	yes	no
Q7QJM5	RL18_ANOGA	No assigned EC number	0.6031	0.9893	0.9788	yes	no
Q8TFH1	RL18B_SCHPO	No assigned EC number	0.6335	0.9786	0.9786	yes	no
Q9VS34	RL18_DROME	No assigned EC number	0.6436	0.9893	0.9840	yes	no
Q60P81	RL18_CAEBR	No assigned EC number	0.6022	0.9251	0.9202	N/A	no
Q940B0	RL183_ARATH	No assigned EC number	0.8609	1.0	1.0	yes	no
P50885	RL18_TRYB2	No assigned EC number	0.5210	0.9679	0.9378	N/A	no
Q56FG8	RL18_LYSTE	No assigned EC number	0.6489	0.9893	0.9840	N/A	no
O65729	RL18_CICAR	No assigned EC number	0.8586	0.9786	1.0	N/A	no
P0DJ17	RL18_TETTH	No assigned EC number	0.5722	0.9465	0.9779	N/A	no
Q6F442	RL18_PLUXY	No assigned EC number	0.6195	0.9572	0.9781	N/A	no
Q0PXY6	RL18_DIACI	No assigned EC number	0.6276	0.9893	0.9840	N/A	no
P0CX50	RL18B_YEAST	No assigned EC number	0.5978	0.9839	0.9892	yes	no
Q2M0G4	RL18_DROPS	No assigned EC number	0.6310	0.9839	0.9735	yes	no
Q4N438	RL18_THEPA	No assigned EC number	0.5957	0.9786	0.9945	yes	no
Q962Y8	RL18_SPOFR	No assigned EC number	0.6413	0.9572	0.9781	N/A	no
P42791	RL182_ARATH	No assigned EC number	0.8609	1.0	1.0	yes	no
Q1HR62	RL18_AEDAE	No assigned EC number	0.6296	0.9893	0.9788	N/A	no
P09897	RL18A_XENLA	No assigned EC number	0.6306	0.9251	0.9202	N/A	no
Q07020	RL18_HUMAN	No assigned EC number	0.6647	0.9251	0.9202	yes	no
Q10192	RL18A_SCHPO	No assigned EC number	0.6282	0.9786	0.9786	yes	no
Q4QG98	RL18_LEIMA	No assigned EC number	0.5153	0.9679	0.9141	yes	no
Q5UAS1	RL18_BOMMO	No assigned EC number	0.6141	0.9572	0.9781	N/A	no
P12001	RL18_RAT	No assigned EC number	0.6590	0.9251	0.9202	yes	no
P0CX49	RL18A_YEAST	No assigned EC number	0.5978	0.9839	0.9892	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	187
PTZ00469	187	PTZ00469, PTZ00469, 60S ribosomal subunit protein	2e-67
PTZ00195	198	PTZ00195, PTZ00195, 60S ribosomal protein L18; Pro	4e-57
COG1727	122	COG1727, RPL18A, Ribosomal protein L18E [Translati	3e-33
pfam00828	122	pfam00828, Ribosomal_L18e, Ribosomal protein L18e/	2e-29
PRK04005	111	PRK04005, PRK04005, 50S ribosomal protein L18e; Pr	2e-08

>gnl|CDD|185648 PTZ00469, PTZ00469, 60S ribosomal subunit protein L18; Provisional

 Score =  203 bits (518), Expect = 2e-67
 Identities = 114/186 (61%), Positives = 137/186 (73%)

Query: 1   MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
           MGI L   G+ KK  R    S + YL+LLVKLYRFL RRT++NF+K+I KRL M K  +P
Sbjct: 1   MGIALKNVGRIKKHGRKNLVSKNPYLRLLVKLYRFLARRTNANFNKIIAKRLIMPKRFRP 60

Query: 61  PMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLS+L + M    D +AVVVG++TDD R+Y+   LKV ALRFTETAR RI  AGGECL
Sbjct: 61  PLSLSKLHRHMASYPDDVAVVVGSITDDKRLYDCKKLKVCALRFTETARKRILDAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLAL+ P GQ  +LLRGP  AR A KHFG APG P S  +PYVRSKGRKFE+ARG+R
Sbjct: 121 TFDQLALKYPTGQKCILLRGPTKARTAEKHFGKAPGRPKSKARPYVRSKGRKFEKARGRR 180

Query: 181 NSRGFR 186
            SR ++
Sbjct: 181 KSRAYK 186

Length = 187

>gnl|CDD|140222 PTZ00195, PTZ00195, 60S ribosomal protein L18; Provisional

 Score =  177 bits (451), Expect = 4e-57
 Identities = 98/194 (50%), Positives = 133/194 (68%), Gaps = 11/194 (5%)

Query: 1   MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
           MG+DL    K  +  R    S + Y+KLL+KLY+FL +RT S F+KV+ +RL  S+ N+ 
Sbjct: 1   MGVDLTGISKKSRVVRHHTYSTNPYIKLLIKLYKFLAKRTSSGFNKVVYQRLIKSRSNRA 60

Query: 61  PMSLSRLTKFM--------KGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARI 112
           P+SLSR+   M        KGK+  IAVVVG V DD+R+  +PA++V ALRF+++AR  I
Sbjct: 61  PISLSRIAVVMKRKAVFTAKGKKAPIAVVVGDVLDDVRMARIPAMRVCALRFSKSARQSI 120

Query: 113 EKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRK 172
             AGGECLTFDQLA+ AP G+NT LLRG K+ RE+V+HFG A GVP SH+KPY  ++G+ 
Sbjct: 121 VAAGGECLTFDQLAMIAPTGKNTYLLRGRKSGRESVRHFG-ASGVPGSHSKPYATNRGK- 178

Query: 173 FERARGKRNSRGFR 186
            E  RG+R  R ++
Sbjct: 179 -ETKRGRRTGRSYK 191

Length = 198

>gnl|CDD|224641 COG1727, RPL18A, Ribosomal protein L18E [Translation, ribosomal structure and biogenesis]

 Score =  114 bits (288), Expect = 3e-33
 Identities = 43/126 (34%), Positives = 72/126 (57%), Gaps = 4/126 (3%)

Query: 14  SKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKG 73
                  S ++YL+ L++  R   RR+ +   K + +RL   + N+  +++S++ ++ K 
Sbjct: 1   MSMKKTGSTNVYLRKLIRFLRKAARRSSAPIWKDVAERLEKPRRNRAEVNVSKINRYAK- 59

Query: 74  KEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQ 133
            E    VV G V  D ++     + V ALRF++TAR +IE+AGGECLT ++LA R P G 
Sbjct: 60  -EGDTVVVPGKVLGDGKL--DKKVTVAALRFSKTAREKIEEAGGECLTLEELAERNPKGS 116

Query: 134 NTVLLR 139
           N  ++R
Sbjct: 117 NVRIMR 122

Length = 122

>gnl|CDD|216140 pfam00828, Ribosomal_L18e, Ribosomal protein L18e/L15

 Score =  105 bits (263), Expect = 2e-29
 Identities = 46/131 (35%), Positives = 66/131 (50%), Gaps = 19/131 (14%)

Query: 2   GIDLIAGGKSKKSKRTAPKS-NDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
           GI     G+ +K  R         +    V LYR L +R            LF S+ N+P
Sbjct: 1   GIIGKTRGRGRKGGRGRAGGQKHHFEGGQVPLYRRLGKRGFRK--------LFKSRKNRP 52

Query: 61  PMSLSRLTKFMK----GKEDKIAVVVGTVTDDIRVY-----EVPALKVTALRFTETARAR 111
           P++LS+L + M       + +  VVVGTVTDD++V        P L V AL+F+++AR +
Sbjct: 53  PVNLSKLDRKMLKDGEEVDGETLVVVGTVTDDVKVLGNGELTKP-LTVKALKFSKSAREK 111

Query: 112 IEKAGGECLTF 122
           IEKAGGE +  
Sbjct: 112 IEKAGGEVVLL 122

This family includes eukaryotic L18 as well as prokaryotic L15. Length = 122

>gnl|CDD|235196 PRK04005, PRK04005, 50S ribosomal protein L18e; Provisional

 Score = 49.8 bits (120), Expect = 2e-08
 Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 11/116 (9%)

Query: 29  LVKLYRFLV---RRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTV 85
           L KL R L    R   +   K + +RL   +  +  ++LS++ ++   KE    VV G V
Sbjct: 2   LRKLIRDLKKASRENGAPIWKDVAERLEKPRRRRAEVNLSKINRY--AKEGDTVVVPGKV 59

Query: 86  --TDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLR 139
             +  +       + V AL F+ETA+ +IE+AGG+ LT ++L    P G N  ++R
Sbjct: 60  LGSGKLDH----KVTVAALSFSETAKEKIEEAGGKALTIEELVEENPKGSNVRIMR 111

Length = 111

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	187
PTZ00469	187	60S ribosomal subunit protein L18; Provisional	100.0
PTZ00195	198	60S ribosomal protein L18; Provisional	100.0
KOG1714	188	consensus 60s ribosomal protein L18 [Translation,	100.0
COG1727	122	RPL18A Ribosomal protein L18E [Translation, riboso	100.0
PRK04005	111	50S ribosomal protein L18e; Provisional	100.0
PF00828	129	Ribosomal_L18e: Ribosomal protein L18e/L15; InterP	99.7
PRK05592	146	rplO 50S ribosomal protein L15; Reviewed	99.64
TIGR01071	145	rplO_bact ribosomal protein L15, bacterial/organel	99.61
COG0200	152	RplO Ribosomal protein L15 [Translation, ribosomal	99.47
PRK06419	148	rpl15p 50S ribosomal protein L15P; Reviewed	99.44
PTZ00160	147	60S ribosomal protein L27a; Provisional	99.18
KOG0846	274	consensus Mitochondrial/chloroplast ribosomal prot	98.31
KOG1742	147	consensus 60s ribosomal protein L15/L27 [Translati	97.03

>PTZ00469 60S ribosomal subunit protein L18; Provisional

Probab=100.00  E-value=8.8e-82  Score=521.69  Aligned_cols=187  Identities=61%  Similarity=0.972  Sum_probs=183.4

Q ss_pred             CceeeccCCccccCCCCCCCCccHHHHHHHHHHHHHhhcCCChHHHHHHHHhhcCCCCCCccchHHHhhhhccCCCcEEE
Q 029840            1 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAV   80 (187)
Q Consensus         1 mg~d~~~~~~~~~~~rk~~~stN~~l~~Li~llk~~ar~t~sp~~rrV~kRlf~~r~~~~~VNLs~L~~~~~~~~~k~vv   80 (187)
                      |||||++.+++++.+|+.|+||||||++||++|+|+||+|++|||++|++|||||+++++|||||+|++++++.+++++|
T Consensus         1 mgid~~~~~~~~k~~r~~~~stN~yL~~Lik~yk~larrt~a~fwk~Va~RL~~srrnr~pVnLSkI~r~~~~ke~~~~V   80 (187)
T PTZ00469          1 MGIALKNVGRIKKHGRKNLVSKNPYLRLLVKLYRFLARRTNANFNKIIAKRLIMPKRFRPPLSLSKLHRHMASYPDDVAV   80 (187)
T ss_pred             CceecccCccccCCCccCCCCCCHHHHHHHHHHHHHHHhhCChHHHHHHHHHhcccccCCceeHHHHHHHhccCCCCEEE
Confidence            99999976899999999999999999999999999999999999999999999999999999999999999655899999


Q ss_pred             EEeeecCCceeeeecCeEEEEEeccHHHHHHHHHhCCeEEeHHHHHHhCCCCCcEEEeecCCchhHHhhhhCCCCCCCCC
Q 029840           81 VVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHS  160 (187)
Q Consensus        81 v~gKVLg~G~l~~vpkl~V~A~~fS~sA~eKIekAGGki~t~dqL~~~~P~G~~v~ll~g~~~~r~~~~hfg~a~g~~~s  160 (187)
                      |||||||||+|.+||+|+||||.||++|+++|++|||+|+||||||++||+|+||+||+||+++|||++|||+|||+|||
T Consensus        81 VvGkVl~dgrl~~vpkvtVaAL~fS~~Ar~kI~~AGGe~lT~dqLa~~~P~G~nv~Ll~g~r~~R~a~khfg~apg~p~s  160 (187)
T PTZ00469         81 VVGSITDDKRLYDCKKLKVCALRFTETARKRILDAGGECLTFDQLALKYPTGQKCILLRGPTKARTAEKHFGKAPGRPKS  160 (187)
T ss_pred             EEeeEccCccccccCceEEEEEecCHHHHHHHHHhCCEEEeHHHHHHHCCCCCceEEEECCCchhHHHHhcCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccccCcchhhhccccccCCCCC
Q 029840          161 HTKPYVRSKGRKFERARGKRNSRGFRV  187 (187)
Q Consensus       161 ~~~p~v~skgrk~e~~r~~~~~~~~k~  187 (187)
                      ||+|||+|||||||+|||||+|||||.
T Consensus       161 ~t~P~v~skgrk~E~argrr~s~~~k~  187 (187)
T PTZ00469        161 KARPYVRSKGRKFEKARGRRKSRAYKK  187 (187)
T ss_pred             CCCCceecccchhhhhcccccccccCC
Confidence            999999999999999999999999984

>PTZ00195 60S ribosomal protein L18; Provisional

Probab=100.00  E-value=9.4e-79  Score=506.27  Aligned_cols=183  Identities=53%  Similarity=0.902  Sum_probs=178.3

Q ss_pred             CceeeccCCccccCCCCCCCCccHHHHHHHHHHHHHhhcCCChHHHHHHHHhhcCCCCCCccchHHHhhhhcc-------
Q 029840            1 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKG-------   73 (187)
Q Consensus         1 mg~d~~~~~~~~~~~rk~~~stN~~l~~Li~llk~~ar~t~sp~~rrV~kRlf~~r~~~~~VNLs~L~~~~~~-------   73 (187)
                      |||||++.+++++..|+.|+||||||++||++|+|+||+|+++||++|++|||||+++++|||||+|++++++       
T Consensus         1 mgid~~~~~~~~~~~r~~pkstN~yL~lLVklyrflaRrt~a~fnk~VakRL~~sr~nRppVsLSrI~r~~k~~d~~~~~   80 (198)
T PTZ00195          1 MGVDLTGISKKSRVVRHHTYSTNPYIKLLIKLYKFLAKRTSSGFNKVVYQRLIKSRSNRAPISLSRIAVVMKRKAVFTAK   80 (198)
T ss_pred             CceecccccccccccccCCCCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcccccCCceeHHHHHHHHhcccccccc
Confidence            9999997789999999999999999999999999999999999999999999999999999999999999962       


Q ss_pred             -CCCcEEEEEeeecCCceeeeecCeEEEEEeccHHHHHHHHHhCCeEEeHHHHHHhCCCCCcEEEeecCCchhHHhhhhC
Q 029840           74 -KEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFG  152 (187)
Q Consensus        74 -~~~k~vvv~gKVLg~G~l~~vpkl~V~A~~fS~sA~eKIekAGGki~t~dqL~~~~P~G~~v~ll~g~~~~r~~~~hfg  152 (187)
                       .+++|+||||||||||+|.+||+|+||||.||++|+++|++|||+|+||||||++||+|+||+||+||+++|||++|||
T Consensus        81 ~~~~k~~VVvGkVtdd~rl~~vPkvtVaALrfS~tAr~rI~kAGGe~lT~dQLa~~~PkG~ntvLlrg~r~~Rea~khfG  160 (198)
T PTZ00195         81 GKKAPIAVVVGDVLDDVRMARIPAMRVCALRFSKSARQSIVAAGGECLTFDQLAMIAPTGKNTYLLRGRKSGRESVRHFG  160 (198)
T ss_pred             CCCCcEEEEEeeEcCCccccccCceEEEEEecCHHHHHHHHHhCCEEEeHHHHHHHCCCCCCeEEEECCCchhHHHHhcC
Confidence             2567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcccccCcchhhhccccccCCCC
Q 029840          153 PAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR  186 (187)
Q Consensus       153 ~a~g~~~s~~~p~v~skgrk~e~~r~~~~~~~~k  186 (187)
                       |||+|||||+|||+||||  |+|||||+|||||
T Consensus       161 -apg~p~s~~kP~v~skgr--e~aRgrr~srg~k  191 (198)
T PTZ00195        161 -ASGVPGSHSKPYATNRGK--ETKRGRRTGRSYK  191 (198)
T ss_pred             -CCCCCCCCCCCceecccc--hhhcccccccchh
Confidence             999999999999999998  9999999999998

>KOG1714 consensus 60s ribosomal protein L18 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=7e-71  Score=452.20  Aligned_cols=186  Identities=73%  Similarity=1.121  Sum_probs=181.8

Q ss_pred             CceeeccCCccccCCCCCCCCccHHHHHHHHHHHHHhhcCCChHHHHHHHHhhcCCCCCCccchHHHhhhhcc--CCCcE
Q 029840            1 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKG--KEDKI   78 (187)
Q Consensus         1 mg~d~~~~~~~~~~~rk~~~stN~~l~~Li~llk~~ar~t~sp~~rrV~kRlf~~r~~~~~VNLs~L~~~~~~--~~~k~   78 (187)
                      |||||.| +++++..|++|+|+|+||++|+++|+|+||+|++.||+.|+||||||+.+++|++|++|.+.++.  .++++
T Consensus         1 mg~di~~-~~~~k~~RtePkS~dvYLrllvkly~flarrT~s~fn~vvLKrLfmSk~nrpPlsls~iir~~k~~~~enKt   79 (188)
T KOG1714|consen    1 MGIDILH-NKSRKVRRTEPKSQDVYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSKTNRPPLSLSRIIRKMKLPGQENKT   79 (188)
T ss_pred             CCccccC-CccccccccCCCCccHHHHHHHHHHHHHHHhcccHHHHHHHHHHhhhcccCCCcCHHHHHHHhhccCccCce
Confidence            9999877 89999999999999999999999999999999999999999999999999999999999999974  36789


Q ss_pred             EEEEeeecCCceeeeecCeEEEEEeccHHHHHHHHHhCCeEEeHHHHHHhCCCCCcEEEeecCCchhHHhhhhCCCCCCC
Q 029840           79 AVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVP  158 (187)
Q Consensus        79 vvv~gKVLg~G~l~~vpkl~V~A~~fS~sA~eKIekAGGki~t~dqL~~~~P~G~~v~ll~g~~~~r~~~~hfg~a~g~~  158 (187)
                      +||+|+|+||-+|.+||+++|||+.||++|+++|++|||+|+||||||+.+|+|+||+|++||+++||+|+|||+|||+|
T Consensus        80 aVVVgTvtdD~rv~~vPkl~v~al~~t~~ar~rI~kagg~i~TlDQLal~sP~g~~TvLlsgp~~~re~y~hfg~aPgtp  159 (188)
T KOG1714|consen   80 AVVVGTVTDDLRVQEVPKLKVAALRFTKGARARILKAGGEILTLDQLALDSPKGCNTVLLSGPKKGREAYKHFGKAPGTP  159 (188)
T ss_pred             EEEEeeecccceeeecccceeeeeecccchhhhhhccCceEEeeHHhcccCCCCCceEEeeCCcccHHHHHhcCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccccCcchhhhccccccCCCCC
Q 029840          159 HSHTKPYVRSKGRKFERARGKRNSRGFRV  187 (187)
Q Consensus       159 ~s~~~p~v~skgrk~e~~r~~~~~~~~k~  187 (187)
                      |||++|||+|||+|||+|||||+|+||++
T Consensus       160 hshtkpyv~skgrkfE~argrr~s~g~k~  188 (188)
T KOG1714|consen  160 HSHTKPYVRSKGRKFERARGRRASRGFKV  188 (188)
T ss_pred             CCCCCcchhcchhhHHHhcchhhhhccCC
Confidence            99999999999999999999999999985

>COG1727 RPL18A Ribosomal protein L18E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.2e-43  Score=276.33  Aligned_cols=121  Identities=36%  Similarity=0.601  Sum_probs=117.7

Q ss_pred             CCCCCCCccHHHHHHHHHHHHHhhcCCChHHHHHHHHhhcCCCCCCccchHHHhhhhccCCCcEEEEEeeecCCceeeee
Q 029840           15 KRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEV   94 (187)
Q Consensus        15 ~rk~~~stN~~l~~Li~llk~~ar~t~sp~~rrV~kRlf~~r~~~~~VNLs~L~~~~~~~~~k~vvv~gKVLg~G~l~~v   94 (187)
                      .|+.|.+||+||+.||++|+++|+++++|||++|++||++|+++|++||||+|+++++  +||++||||||||+|.|.+ 
T Consensus         2 ~~~~t~~tN~~L~~Li~~l~~~ar~~~a~iwk~vaerL~~prr~ra~VnlsKI~r~ak--~~d~vvVpGkVLg~g~l~~-   78 (122)
T COG1727           2 SMKKTGSTNVYLRKLIRFLRKAARRSSAPIWKDVAERLEKPRRNRAEVNVSKINRYAK--EGDTVVVPGKVLGDGKLDK-   78 (122)
T ss_pred             CcCCCCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHhcccccCCceeHHHHHhhcC--CCCEEEEeeeEecCccccc-
Confidence            4788999999999999999999999999999999999999999999999999999998  8999999999999998886 


Q ss_pred             cCeEEEEEeccHHHHHHHHHhCCeEEeHHHHHHhCCCCCcEEEee
Q 029840           95 PALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLR  139 (187)
Q Consensus        95 pkl~V~A~~fS~sA~eKIekAGGki~t~dqL~~~~P~G~~v~ll~  139 (187)
                       +++|.|++||++|++||++|||+|+|||||+++||+|+||+||+
T Consensus        79 -kVtVaAl~FS~~A~~KI~~aGGe~~tl~el~e~nPkGs~vri~~  122 (122)
T COG1727          79 -KVTVAALRFSKTAREKIEEAGGECLTLEELAERNPKGSNVRIMR  122 (122)
T ss_pred             -ceEEEEEecCHHHHHHHHHcCCeEeeHHHHHHHCCCCCCeEeeC
Confidence             99999999999999999999999999999999999999999985

>PRK04005 50S ribosomal protein L18e; Provisional

Probab=100.00  E-value=7.9e-35  Score=224.94  Aligned_cols=111  Identities=30%  Similarity=0.472  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHhhcCCChHHHHHHHHhhcCCCCCCccchHHHhhhhccCCCcEEEEEeeecCCceeeeecCeEEEEEec
Q 029840           25 YLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRF  104 (187)
Q Consensus        25 ~l~~Li~llk~~ar~t~sp~~rrV~kRlf~~r~~~~~VNLs~L~~~~~~~~~k~vvv~gKVLg~G~l~~vpkl~V~A~~f  104 (187)
                      +|++||++|+++||++++|||++|++||+||+++|.+|||++|++++.  +++++++++||||+|++++  +++|+|+.|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~v~~rl~~~r~~y~vVNL~~L~~~~~--~~~vv~~~~KVLg~G~l~k--~l~V~a~~~   76 (111)
T PRK04005          1 RLRKLIRDLKKASRENGAPIWKDVAERLEKPRRRRAEVNLSKINRYAK--EGDTVVVPGKVLGSGKLDH--KVTVAALSF   76 (111)
T ss_pred             CHHHHHHHHHHHHhhhCCcHHHHHHHHHhCCCCccceEEHHHHHhhcc--CCCEEEEeeEEEcCceEcC--CEEEEEeec
Confidence            578999999999999999999999999999999999999999998864  4677778999999999997  999999999


Q ss_pred             cHHHHHHHHHhCCeEEeHHHHHHhCCCCCcEEEee
Q 029840          105 TETARARIEKAGGECLTFDQLALRAPLGQNTVLLR  139 (187)
Q Consensus       105 S~sA~eKIekAGGki~t~dqL~~~~P~G~~v~ll~  139 (187)
                      |++|+++||+|||+|++++||+++||+|+||+||+
T Consensus        77 Sk~A~ekIe~aGG~v~~~~~l~~~~p~g~~~~l~~  111 (111)
T PRK04005         77 SETAKEKIEEAGGKALTIEELVEENPKGSNVRIMR  111 (111)
T ss_pred             CHHHHHHHHHcCCEEEEHHHHHHHCCCCCCeEEeC
Confidence            99999999999999999999999999999999984

>PF00828 Ribosomal_L18e: Ribosomal protein L18e/L15; InterPro: IPR021131 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.70  E-value=7.5e-18  Score=131.45  Aligned_cols=79  Identities=32%  Similarity=0.492  Sum_probs=65.6

Q ss_pred             ChHHHHHHHHhhcC------CCCCCccchHHHhhhhcc-------CCCcEEEEE------eeecCCceeeeecCeEEEEE
Q 029840           42 SNFDKVILKRLFMS------KVNKPPMSLSRLTKFMKG-------KEDKIAVVV------GTVTDDIRVYEVPALKVTAL  102 (187)
Q Consensus        42 sp~~rrV~kRlf~~------r~~~~~VNLs~L~~~~~~-------~~~k~vvv~------gKVLg~G~l~~vpkl~V~A~  102 (187)
                      .|+|++++|++|.+      +.++++|||++|+++++.       .+.+++++.      .||||+|+|+.  +|+|+|+
T Consensus        32 ~pl~rr~pK~Gf~~~~~~~~~~~~~~vnL~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~KvLg~G~l~~--~l~I~a~  109 (129)
T PF00828_consen   32 MPLYRRLPKRGFNNPHLRKNRREYPPVNLSKLQELIEKLKIDGTEIDGKILVDAGLIKGYVKVLGKGELTK--PLTIKAH  109 (129)
T ss_dssp             SHHHHHSSSSSHHHCCHCSGTCCCEEEEHHHHHHHTTTSSSSSCECTTSEEEECCEESSEEEEESSSSSSS--SEEEEES
T ss_pred             cccccccCcccccccccccCcceeEeeeHHHHHHHHHhccccccccCCceeeeccccccceeeeccCCccc--ceEEEEE
Confidence            47777888887665      468999999999987652       134565553      49999999987  8999999


Q ss_pred             eccHHHHHHHHHhCCeEEeH
Q 029840          103 RFTETARARIEKAGGECLTF  122 (187)
Q Consensus       103 ~fS~sA~eKIekAGGki~t~  122 (187)
                      .||++|+++||+|||+|++|
T Consensus       110 ~~S~~A~ekIe~aGG~v~~~  129 (129)
T PF00828_consen  110 RFSKSAKEKIEAAGGEVVTF  129 (129)
T ss_dssp             EETHHHHHHHHHTSEEEEEH
T ss_pred             ecCHHHHHHHHHcCCEEEeC
Confidence            99999999999999999987

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents both L15 and L18e ribosomal proteins, which share a common structure consisting mainly of parallel beta sheets (beta-alpha-beta units) with a core of three turns of irregular (beta-beta-alpha)n superhelix [, ].; PDB: 3O58_Y 1S1I_V 3O5H_Y 3IZS_O 3IZR_R 2OTL_L 1M1K_M 3G6E_L 1VQ9_L 1YIT_L ....

>PRK05592 rplO 50S ribosomal protein L15; Reviewed

Probab=99.64  E-value=7.8e-17  Score=129.72  Aligned_cols=77  Identities=23%  Similarity=0.314  Sum_probs=66.9

Q ss_pred             CCChHHHHHHHHhhcC--CCCCCccchHHHhhhhccCCCcEE---------EE-----EeeecCCceeeeecCeEEEEEe
Q 029840           40 TDSNFDKVILKRLFMS--KVNKPPMSLSRLTKFMKGKEDKIA---------VV-----VGTVTDDIRVYEVPALKVTALR  103 (187)
Q Consensus        40 t~sp~~rrV~kRlf~~--r~~~~~VNLs~L~~~~~~~~~k~v---------vv-----~gKVLg~G~l~~vpkl~V~A~~  103 (187)
                      -..|||+++|||+|.+  ++.|.+|||++|+++.+   +++|         ++     ++||||+|+|+.  +|+|.|+.
T Consensus        53 GQ~Pl~rrlPk~Gf~~~~~~~y~~VNL~~L~~~~~---~~~I~~~~L~~~gli~~~~~~vKvLg~G~l~~--~i~I~a~~  127 (146)
T PRK05592         53 GQMPLYRRLPKRGFTNIFRKEYAVVNLGDLNKFEE---GTEVTLEALKAAGLIRKNIKGVKVLGNGELTK--KLTVKAHK  127 (146)
T ss_pred             CCCceEEEcccCCcCCCCcceEEEEeHHHhhccCC---CCeECHHHHHHCCcccCCCcceEEEecCcccc--CEEEEEEc
Confidence            4579999999999998  68899999999997532   3333         22     799999999998  99999999


Q ss_pred             ccHHHHHHHHHhCCeEEe
Q 029840          104 FTETARARIEKAGGECLT  121 (187)
Q Consensus       104 fS~sA~eKIekAGGki~t  121 (187)
                      ||++|+|+||+|||+|+.
T Consensus       128 ~S~sA~e~IE~aGG~v~~  145 (146)
T PRK05592        128 FSKSAKEAIEAAGGKVEE  145 (146)
T ss_pred             cCHHHHHHHHHcCCEEEe
Confidence            999999999999999864

>TIGR01071 rplO_bact ribosomal protein L15, bacterial/organelle

Probab=99.61  E-value=2.7e-16  Score=126.03  Aligned_cols=77  Identities=25%  Similarity=0.343  Sum_probs=65.9

Q ss_pred             CCChHHHHHHHHhhcC---CCCCCccchHHHhhhhccCCCcEE---------E-----EEeeecCCceeeeecCeEEEEE
Q 029840           40 TDSNFDKVILKRLFMS---KVNKPPMSLSRLTKFMKGKEDKIA---------V-----VVGTVTDDIRVYEVPALKVTAL  102 (187)
Q Consensus        40 t~sp~~rrV~kRlf~~---r~~~~~VNLs~L~~~~~~~~~k~v---------v-----v~gKVLg~G~l~~vpkl~V~A~  102 (187)
                      -..|||+|+||++|.+   +.+|.+|||++|+++++  +++++         +     .++||||+|+|+.  +|+|.|.
T Consensus        52 GQ~Pl~rrlPK~GF~~~~~~~~~~~VNL~~L~~~~~--~g~~i~~~~L~~~gli~~~~~~vKvLg~G~l~~--~l~I~a~  127 (145)
T TIGR01071        52 GQMPLYRRLPKRGFSNKRFKKEYAEVNLGKLAKLFP--NGEVVTLETLKEKGLITKKIKFVKVLGNGKLTK--PLTVKAH  127 (145)
T ss_pred             CCCceEEECCCCCCCCcccCcceeEEEHHHHhhhhh--cCCEecHHHHhhCccCcCCCCceEEeCCCCcCc--CEEEEEE
Confidence            3689999999999997   47899999999998865  22222         1     2489999999998  9999999


Q ss_pred             eccHHHHHHHHHhCCeEE
Q 029840          103 RFTETARARIEKAGGECL  120 (187)
Q Consensus       103 ~fS~sA~eKIekAGGki~  120 (187)
                      +||++|+++||+|||+|+
T Consensus       128 ~~S~sA~ekIE~aGG~v~  145 (145)
T TIGR01071       128 RVSKSAKAAIEAAGGSVE  145 (145)
T ss_pred             EECHHHHHHHHHcCCEEC
Confidence            999999999999999983

>COG0200 RplO Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=4.7e-14  Score=114.61  Aligned_cols=82  Identities=20%  Similarity=0.250  Sum_probs=65.0

Q ss_pred             CCChHHHHHHHHhhcC---CC-CCCccchHHHhhhhccC---------CCcEEE---EEeeecCCceeeeecCeEEEEEe
Q 029840           40 TDSNFDKVILKRLFMS---KV-NKPPMSLSRLTKFMKGK---------EDKIAV---VVGTVTDDIRVYEVPALKVTALR  103 (187)
Q Consensus        40 t~sp~~rrV~kRlf~~---r~-~~~~VNLs~L~~~~~~~---------~~k~vv---v~gKVLg~G~l~~vpkl~V~A~~  103 (187)
                      -..|+|+++||++|++   .. +|.+|||++|+.+++..         +..++.   ..+||||+|+|++-.++.|.| .
T Consensus        54 gq~Pl~rrlpK~GF~~~~~~~~~~~~vn~~~l~~~~~~~~~v~~~~l~~~~~i~~~~~~vKvLg~G~l~~~~~~~v~a-~  132 (152)
T COG0200          54 GQMPLYRRLPKRGFTNSKFKKVEYAVVNLGKLAELLPEGEEVTLASLKAAGVIRKLKDLVKVLGNGKLTKAVPVKVKA-K  132 (152)
T ss_pred             CCcchhhhcCCCCCccccccccceeEEEHHHhhhhccccccccHHHHhhCCeEeccccccEEeccCeeccceeEEEEe-e
Confidence            4679999999999996   33 77999999999888421         223332   259999999999522566666 9


Q ss_pred             ccHHHHHHHHHhCCeEEeH
Q 029840          104 FTETARARIEKAGGECLTF  122 (187)
Q Consensus       104 fS~sA~eKIekAGGki~t~  122 (187)
                      ||++|+|+||+|||+|+.+
T Consensus       133 ~S~~A~ekIe~aGG~v~~~  151 (152)
T COG0200         133 ASKSAIEKIEAAGGKVELI  151 (152)
T ss_pred             eCHHHHHHHHHcCCEEEec
Confidence            9999999999999999865

>PRK06419 rpl15p 50S ribosomal protein L15P; Reviewed

Probab=99.44  E-value=7.6e-14  Score=112.64  Aligned_cols=75  Identities=29%  Similarity=0.336  Sum_probs=61.6

Q ss_pred             HHHHhhcC--C--CCCCccchHHHhhhhcc--------CCC-cEEEE-----EeeecCCceeeeecCeEEEEEeccHHHH
Q 029840           48 ILKRLFMS--K--VNKPPMSLSRLTKFMKG--------KED-KIAVV-----VGTVTDDIRVYEVPALKVTALRFTETAR  109 (187)
Q Consensus        48 V~kRlf~~--r--~~~~~VNLs~L~~~~~~--------~~~-k~vvv-----~gKVLg~G~l~~vpkl~V~A~~fS~sA~  109 (187)
                      ++|++|.+  .  ..+++|||++|+++.+.        .++ ..+++     +.||||+|+|+.  +|+|.|..||++|+
T Consensus        55 fpK~GF~~~~~~~~~~~~INL~~L~~l~~~l~~~g~i~~~~~~~vid~~~~g~~KVLG~G~l~~--pl~Vka~~fS~~A~  132 (148)
T PRK06419         55 YGKHGFKRPPKLIKEVSTINVGELDELADLLKAEGKAEEEDGKIVVDLTELGYDKVLGGGKVTR--PLVIKADAFSEKAI  132 (148)
T ss_pred             CCCCCccCCCcCcceeeeEEHHHHHHhHHHHHHCCcccccCCcceeeeccCCceEEeCCCccCc--CEEEEEeccCHHHH
Confidence            67899988  2  57999999999987621        122 22332     589999999998  99999999999999


Q ss_pred             HHHHHhCCeEEeHHH
Q 029840          110 ARIEKAGGECLTFDQ  124 (187)
Q Consensus       110 eKIekAGGki~t~dq  124 (187)
                      ++||+|||+|++++|
T Consensus       133 ekIe~aGG~v~l~~~  147 (148)
T PRK06419        133 EKIEAAGGEVVLSEE  147 (148)
T ss_pred             HHHHHcCCEEEEeec
Confidence            999999999988765

>PTZ00160 60S ribosomal protein L27a; Provisional

Probab=99.18  E-value=5.3e-11  Score=96.30  Aligned_cols=61  Identities=23%  Similarity=0.360  Sum_probs=49.8

Q ss_pred             CccchHHHhhhhcc--------CCCc-EEEE-----EeeecCCcee-eeecCeEEEEEeccHHHHHHHHHhCCeEEeH
Q 029840           60 PPMSLSRLTKFMKG--------KEDK-IAVV-----VGTVTDDIRV-YEVPALKVTALRFTETARARIEKAGGECLTF  122 (187)
Q Consensus        60 ~~VNLs~L~~~~~~--------~~~k-~vvv-----~gKVLg~G~l-~~vpkl~V~A~~fS~sA~eKIekAGGki~t~  122 (187)
                      ++|||++|++++.+        .+++ .+++     ..||||+|+| +.  +++|.|..||++|+++||+|||+|+.+
T Consensus        71 ~~INl~~L~~lv~~~~~~~~a~~~~~~~vIDl~~~g~~KVLG~G~l~~~--~v~Vka~~~Sk~A~ekIe~aGG~v~l~  146 (147)
T PTZ00160         71 PTINVDKLWSLVPEETRYKYAKKGDKAPVIDVTKAGYFKVLGKGHLPKQ--PVIVKARYFSKKAEKKIKAVGGACVLT  146 (147)
T ss_pred             ceeEHHHHHHHhHHHHHHhhhhccCCceEEEeeccCceEEecCCeEcCc--cEEEEEeecCHHHHHHHHHcCCEEEEc
Confidence            89999999877542        1233 3333     4799999999 65  999999999999999999999999764

>KOG0846 consensus Mitochondrial/chloroplast ribosomal protein L15/L10 [Translation, ribosomal structure and biogenesis]

Probab=98.31  E-value=1.2e-06  Score=76.76  Aligned_cols=80  Identities=25%  Similarity=0.248  Sum_probs=64.4

Q ss_pred             CCChHHHHHHHHhhcC--CCCCCccchHHHhhhhccC---CCcEE----------E--------EEeeecCCceeeeecC
Q 029840           40 TDSNFDKVILKRLFMS--KVNKPPMSLSRLTKFMKGK---EDKIA----------V--------VVGTVTDDIRVYEVPA   96 (187)
Q Consensus        40 t~sp~~rrV~kRlf~~--r~~~~~VNLs~L~~~~~~~---~~k~v----------v--------v~gKVLg~G~l~~vpk   96 (187)
                      -+.|||+++|++.|.+  ++.+.|++|.+|+.+++..   ..+.|          +        +..+..|-+.+.-  +
T Consensus        72 GqtP~yrr~Pk~~~~~~~~r~~~pl~L~rlq~lID~grid~~q~Idm~tL~~~g~i~p~~~eyGv~L~~~G~d~~~~--~  149 (274)
T KOG0846|consen   72 GQTPLYRRFPKFGFGNGGRRQYLPLSLGRLQKLIDTGRIDPSQPIDMKTLKDSGLINPKGREYGVQLTADGADEFKA--K  149 (274)
T ss_pred             CCchhHHhcccccccccccccCCcccHHHHHHHHHhcCCCccCceeHHHHHhccCCCccccccCceeeccCCccccc--e
Confidence            3479999999999988  7999999999999998732   11221          1        2345566677887  9


Q ss_pred             eEEEEEeccHHHHHHHHHhCCeEEe
Q 029840           97 LKVTALRFTETARARIEKAGGECLT  121 (187)
Q Consensus        97 l~V~A~~fS~sA~eKIekAGGki~t  121 (187)
                      |+|.+-.+|..|+++||+|||.|-+
T Consensus       150 i~iEvs~aS~~AiaaIEkaGG~vtt  174 (274)
T KOG0846|consen  150 INIEVSRASVQAIAAIEKAGGSVTT  174 (274)
T ss_pred             EEEEehhhhHHHHHHHHhcCCeEEE
Confidence            9999999999999999999999865

>KOG1742 consensus 60s ribosomal protein L15/L27 [Translation, ribosomal structure and biogenesis]

Probab=97.03  E-value=0.0013  Score=53.26  Aligned_cols=67  Identities=24%  Similarity=0.331  Sum_probs=50.2

Q ss_pred             CCCCCCccchHHHhhhhccC---------CCc--EE-EE---EeeecCCceeeeecCeEEEEEeccHHHHHHHHHhCCeE
Q 029840           55 SKVNKPPMSLSRLTKFMKGK---------EDK--IA-VV---VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGEC  119 (187)
Q Consensus        55 ~r~~~~~VNLs~L~~~~~~~---------~~k--~v-vv---~gKVLg~G~l~~vpkl~V~A~~fS~sA~eKIekAGGki  119 (187)
                      +....++|||++|-.++.++         .+.  ++ |+   ..+|||.|.+..=-++.|.|--||..|.++|.++||.+
T Consensus        64 n~~~~P~vnldkLWtlv~~~~~~~~~~~k~g~aPvidv~~~Gy~kvlGkgklp~~~PvIVKak~~s~~AeekIk~~gg~~  143 (147)
T KOG1742|consen   64 NQSFCPTVNLDKLWTLVREQTRVKAAKNKTGAAPVIDVVQSGYYKVLGKGKLPEETPVIVKAKYFSRRAEEKIKKAGGAV  143 (147)
T ss_pred             ccCcCCcccHHHHHHhhhHHHHHHHhccCCCCCceeeeeecceeEeeccccCCCCCcEEEeccccCccchHHHHhcCcee
Confidence            45668899999996554311         111  22 11   57999999998324899999999999999999999998


Q ss_pred             Ee
Q 029840          120 LT  121 (187)
Q Consensus       120 ~t  121 (187)
                      +.
T Consensus       144 ~~  145 (147)
T KOG1742|consen  144 VL  145 (147)
T ss_pred             ee
Confidence            64

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	187
3izr_R	188	Localization Of The Large Subunit Ribosomal Protein		2e-87
2zkr_o	188	Structure Of A Mammalian Ribosomal 60s Subunit With		4e-56
3izs_R	186	Localization Of The Large Subunit Ribosomal Protein		7e-56
4a17_N	181	T.Thermophila 60s Ribosomal Subunit In Complex With		4e-50
3zf7_I	193	High-resolution Cryo-electron Microscopy Structure		2e-49
3jyw_O	121	Structure Of The 60s Proteins For Eukaryotic Riboso		1e-34
1s1i_O	120	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		4e-34
3j21_P	120	Promiscuous Behavior Of Proteins In Archaeal Riboso		2e-04

>pdb|3IZR|R Chain R, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 188

Iteration: 1
 Score =  317 bits (812), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 151/188 (80%), Positives = 174/188 (92%), Gaps = 1/188 (0%)
Query: 1   MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
           MGIDL+AGG++K++KR APKS+D+YLKLLVKLYRFLVRRT S F+ VILKRLFMSK N+P
Sbjct: 1   MGIDLVAGGRNKRTKRVAPKSDDVYLKLLVKLYRFLVRRTKSKFNAVILKRLFMSKTNRP 60
Query: 61  PMSLSRLTKFMKGKEDK-IAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGEC 119
           P+S+ RL+ FMKGKE+K IAVVVGT+TDD+R+ EVPA+KVTALRFTETARARI  AGGEC
Sbjct: 61  PLSMRRLSNFMKGKEEKNIAVVVGTITDDMRIQEVPAMKVTALRFTETARARIINAGGEC 120
Query: 120 LTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGK 179
           LTFDQLALRAP G+NT+LLRGPKNAREAV+HFG APGVPHSHTKPYVRSKGRKFE+ RG+
Sbjct: 121 LTFDQLALRAPTGENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKVRGR 180
Query: 180 RNSRGFRV 187
           RNSRGF+V
Sbjct: 181 RNSRGFKV 188

>pdb|2ZKR|OO Chain o, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 188

Iteration: 1
 Score =  213 bits (543), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 117/176 (66%), Positives = 141/176 (80%), Gaps = 3/176 (1%)
Query: 1   MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
           MG+D I   K +K +R  PKS DIYL+LLVKLYRFL RRT+S F++V+LKRLFMS+ N+P
Sbjct: 1   MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRP 59
Query: 61  PMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGE 118
           P+SLSR+ + MK  G+E+K AVVVGTVTDD+R+ EVP LKV ALR +  AR+RI KAGG+
Sbjct: 60  PLSLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGK 119
Query: 119 CLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 174
            LTFDQLAL +P G+ TVLL GP+  RE  +HFG APG PHSHTKPYVRSKGRKFE
Sbjct: 120 ILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFE 175

>pdb|3IZS|R Chain R, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 186

Iteration: 1
 Score =  213 bits (541), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 113/189 (59%), Positives = 144/189 (76%), Gaps = 5/189 (2%)
Query: 1   MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
           MGID  +    +   RTAPKS+++YLKLLVKLY FL RRTD+ F+KV+LK LF+SK+N+P
Sbjct: 1   MGIDHTSKQHKRSGHRTAPKSDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRP 60
Query: 61  PMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGE 118
           P+S+SR+ + +K  G  +K  VVVGTVTDD R++E P   V ALRFT  ARA+I KAGGE
Sbjct: 61  PVSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGE 120
Query: 119 CLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARG 178
           C+T DQLA+RAP GQNT++LRGP+N+REAV+HFG     PH    P + S GRKFERARG
Sbjct: 121 CITLDQLAVRAPKGQNTLILRGPRNSREAVRHFGMG---PHKGKAPRILSTGRKFERARG 177
Query: 179 KRNSRGFRV 187
           +R S+GF+V
Sbjct: 178 RRRSKGFKV 186

>pdb|4A17|N Chain N, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 181

Iteration: 1
 Score =  193 bits (491), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 103/180 (57%), Positives = 131/180 (72%), Gaps = 3/180 (1%)
Query: 1   MGIDLIAGGKS-KKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNK 59
           M IDL   G+  K+S     KS ++Y KLL+KLY+FLVRRTDS F++ ILKRL  S++NK
Sbjct: 1   MAIDLHKQGRVVKRSVVRQTKSTNVYHKLLIKLYKFLVRRTDSKFNQNILKRLSSSRLNK 60
Query: 60  PPMSLSRLTKFM-KGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGE 118
            P+SLSR+ K + +  ++++ V   TVT+D R+  VP L V AL+FTETAR RI  AGG+
Sbjct: 61  FPLSLSRIVKNLNETNKEQVIVSTSTVTNDERLLTVPKLTVCALKFTETARKRILAAGGK 120
Query: 119 CLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARG 178
           CLTFDQLAL+AP G N  LLR PK +REA +H+G APG   SH+ PYVRS+GRKFERA G
Sbjct: 121 CLTFDQLALKAPTGTNCFLLRAPK-SREAYRHWGKAPGQRGSHSAPYVRSEGRKFERAHG 179

>pdb|3ZF7|I Chain I, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 193

Iteration: 1
 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 99/190 (52%), Positives = 137/190 (72%), Gaps = 9/190 (4%)
Query: 1   MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
           MG+DL    K K+  R    S + Y+KLL+KLY+FL +RT+S F+K+I KRL  S+ N+ 
Sbjct: 1   MGVDLTGVQKKKRVVRHHTYSTNPYIKLLIKLYKFLGKRTNSPFNKLIHKRLLKSRNNRA 60
Query: 61  PMSLSRLTKFM--------KGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARI 112
           P+SLSR+   M        KGK+  IAV+VG V DD+R+  +PAL++ ALRF+++AR RI
Sbjct: 61  PISLSRIAVCMRRRTVWLKKGKKSPIAVIVGDVLDDVRMTRIPALRICALRFSKSARERI 120
Query: 113 EKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRK 172
             AGGECLTFDQLA+ AP G+NT+LLRG K+ RE+VKHFG A GVP SH KP+V S+G++
Sbjct: 121 TGAGGECLTFDQLAMMAPTGKNTMLLRGRKSGRESVKHFG-AAGVPGSHAKPHVSSRGKE 179
Query: 173 FERARGKRNS 182
            +R+  +R++
Sbjct: 180 RQRSSKRRHA 189

>pdb|3JYW|O Chain O, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 121

Iteration: 1
 Score =  142 bits (357), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/121 (62%), Positives = 98/121 (80%), Gaps = 2/121 (1%)
Query: 21  SNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKI 78
           S+++YLKLLVKLY FL RRTD+ F+KV+LK LF+SK+N+PP+S+SR+ + +K  G  +K 
Sbjct: 1   SDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANKT 60
Query: 79  AVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLL 138
            VVVGTVTDD R++E P   V ALRFT  ARA+I KAGGEC+T DQLA+RAP GQNT++L
Sbjct: 61  VVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGECITLDQLAVRAPKGQNTLIL 120
Query: 139 R 139
           R
Sbjct: 121 R 121

>pdb|1S1I|O Chain O, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 120

Iteration: 1
 Score =  140 bits (353), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 75/120 (62%), Positives = 97/120 (80%), Gaps = 2/120 (1%)
Query: 22  NDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIA 79
           +++YLKLLVKLY FL RRTD+ F+KV+LK LF+SK+N+PP+S+SR+ + +K  G  +K  
Sbjct: 1   DNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANKTV 60
Query: 80  VVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLR 139
           VVVGTVTDD R++E P   V ALRFT  ARA+I KAGGEC+T DQLA+RAP GQNT++LR
Sbjct: 61  VVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGECITLDQLAVRAPKGQNTLILR 120

>pdb|3J21|P Chain P, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 120

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 68/127 (53%), Gaps = 12/127 (9%)
Query: 15  KRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKV---ILKRLFMSKVNKPPMSLSRLTKFM 71
           KRT P   +     L +L R+L ++++    K+   +  RL   +  +  +++S++ ++ 
Sbjct: 2   KRTGPTDPN-----LRRLIRYLRKKSNEYGVKIWKDVAWRLERPRRQRAEVNVSKINRY- 55
Query: 72  KGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPL 131
              + ++ VV G+V    ++ +   + V A +F+ETAR +I +AGGE +T ++L  R P 
Sbjct: 56  -ANDGEMIVVPGSVLGAGKLEK--KVIVAAWKFSETARRKIIEAGGEAITIEELIERNPT 112
Query: 132 GQNTVLL 138
           G    ++
Sbjct: 113 GSGVRIM 119

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	187
3iz5_R	188	60S ribosomal protein L18 (L18E); eukaryotic ribos	1e-87
2zkr_o	188	60S ribosomal protein L18; protein-RNA complex, 60	1e-84
3izc_R	186	60S ribosomal protein RPL18 (L18E); eukaryotic rib	1e-79
4a17_N	181	RPL18, 60S ribosomal protein L5; eukaryotic riboso	6e-77
3jyw_O	121	60S ribosomal protein L18(A); eukaryotic ribosome,	2e-49
1vq8_O	116	50S ribosomal protein L18E; ribosome 50S, protein-	1e-43

>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 188

 Score =  246 bits (630), Expect = 1e-84
 Identities = 125/188 (66%), Positives = 152/188 (80%), Gaps = 3/188 (1%)

Query: 1   MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
           MG+D I   K +K +R  PKS DIYL+LLVKLYRFL RRT+S F++V+LKRLFMS+ N+P
Sbjct: 1   MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRP 59

Query: 61  PMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGE 118
           P+SLSR+ + MK  G+E+K AVVVGTVTDD+R+ EVP LKV ALR +  AR+RI KAGG+
Sbjct: 60  PLSLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGK 119

Query: 119 CLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARG 178
            LTFDQLAL +P G+ TVLL GP+  RE  +HFG APG PHSHTKPYVRSKGRKFERARG
Sbjct: 120 ILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARG 179

Query: 179 KRNSRGFR 186
           +R SRG++
Sbjct: 180 RRASRGYK 187

>4a17_N RPL18, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_N 4a1c_N 4a1e_N Length = 181

 Score =  227 bits (579), Expect = 6e-77
 Identities = 103/182 (56%), Positives = 130/182 (71%), Gaps = 3/182 (1%)

Query: 1   MGIDLIAGG-KSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNK 59
           M IDL   G   K+S     KS ++Y KLL+KLY+FLVRRTDS F++ ILKRL  S++NK
Sbjct: 1   MAIDLHKQGRVVKRSVVRQTKSTNVYHKLLIKLYKFLVRRTDSKFNQNILKRLSSSRLNK 60

Query: 60  PPMSLSRLTKFMK-GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGE 118
            P+SLSR+ K +    ++++ V   TVT+D R+  VP L V AL+FTETAR RI  AGG+
Sbjct: 61  FPLSLSRIVKNLNETNKEQVIVSTSTVTNDERLLTVPKLTVCALKFTETARKRILAAGGK 120

Query: 119 CLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARG 178
           CLTFDQLAL+AP G N  LLR PK +REA +H+G APG   SH+ PYVRS+GRKFERA G
Sbjct: 121 CLTFDQLALKAPTGTNCFLLRAPK-SREAYRHWGKAPGQRGSHSAPYVRSEGRKFERAHG 179

Query: 179 KR 180
            +
Sbjct: 180 LK 181

>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O Length = 121

 Score =  155 bits (393), Expect = 2e-49
 Identities = 76/121 (62%), Positives = 98/121 (80%), Gaps = 2/121 (1%)

Query: 21  SNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKI 78
           S+++YLKLLVKLY FL RRTD+ F+KV+LK LF+SK+N+PP+S+SR+ + +K  G  +K 
Sbjct: 1   SDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANKT 60

Query: 79  AVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLL 138
            VVVGTVTDD R++E P   V ALRFT  ARA+I KAGGEC+T DQLA+RAP GQNT++L
Sbjct: 61  VVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGECITLDQLAVRAPKGQNTLIL 120

Query: 139 R 139
           R
Sbjct: 121 R 121

>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ... Length = 116

 Score =  140 bits (354), Expect = 1e-43
 Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 5/120 (4%)

Query: 20  KSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIA 79
              +  L  L+   +   R +       + +RL   +     ++L R+ ++   +ED+  
Sbjct: 2   SKTNPRLSSLIADLKSAARSSGGAVWGDVAERLEKPRRTHAEVNLGRIERYA--QEDETV 59

Query: 80  VVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLR 139
           VV G V     + +   + V A+ F+ TA  +I+   GE ++ +Q     P G +  ++R
Sbjct: 60  VVPGKVLGSGVLQK--DVTVAAVDFSGTAETKID-QVGEAVSLEQAIENNPEGSHVRVIR 116

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	187
3iz5_R	188	60S ribosomal protein L18 (L18E); eukaryotic ribos	100.0
2zkr_o	188	60S ribosomal protein L18; protein-RNA complex, 60	100.0
3izc_R	186	60S ribosomal protein RPL18 (L18E); eukaryotic rib	100.0
4a17_N	181	RPL18, 60S ribosomal protein L5; eukaryotic riboso	100.0
3jyw_O	121	60S ribosomal protein L18(A); eukaryotic ribosome,	100.0
3j21_P	120	50S ribosomal protein L18E; archaea, archaeal, KIN	100.0
1vq8_O	116	50S ribosomal protein L18E; ribosome 50S, protein-	100.0
3r8s_L	143	50S ribosomal protein L15; protein biosynthesis, R	99.66
3v2d_P	150	50S ribosomal protein L15; ribosome associated inh	99.56
2zjr_I	156	50S ribosomal protein L15; ribosome, large ribosom	99.53
3j21_L	147	50S ribosomal protein L15P; archaea, archaeal, KIN	99.52
1vq8_L	165	50S ribosomal protein L15P; ribosome 50S, protein-	99.51
2zkr_l	148	60S ribosomal protein L27A; protein-RNA complex, 6	99.42
3bbo_N	257	Ribosomal protein L15; large ribosomal subunit, sp	99.37
4a17_K	149	L29, RPL27A, 60S ribosomal protein L27A; eukaryoti	99.27
3o58_Y	149	60S ribosomal protein L28; ribosomal RNA and prote	99.08
3iz5_O	144	60S ribosomal protein L27A (L15P); eukaryotic ribo	98.86

>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=4.5e-79  Score=506.27  Aligned_cols=186  Identities=66%  Similarity=1.090  Sum_probs=113.7

Q ss_pred             CceeeccCCccccCCCCCCCCccHHHHHHHHHHHHHhhcCCChHHHHHHHHhhcCCCCCCccchHHHhhhh--ccCCCcE
Q 029840            1 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFM--KGKEDKI   78 (187)
Q Consensus         1 mg~d~~~~~~~~~~~rk~~~stN~~l~~Li~llk~~ar~t~sp~~rrV~kRlf~~r~~~~~VNLs~L~~~~--~~~~~k~   78 (187)
                      |||||++ +++++..|+.|+||||||++||++|+|+||+|++|||++||||||+|+++|++|||++|++++  +++++++
T Consensus         1 mg~d~~~-~~~~~~~r~~~~s~n~~l~~Lvk~yr~larrt~apl~rrlpKRgF~sr~~y~~VNLs~L~~~~~~~g~~~~i   79 (188)
T 2zkr_o            1 MGVDIRH-NKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKT   79 (188)
T ss_dssp             --------------------CCCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHSCTTTSCEEEHHHHHSCSSSCCSTTSE
T ss_pred             Cceeeec-CcccccccCCCCCCCHHHHHHHHHHHHHHhccCCCHHHHHHHhhCCCccceeeeeHHHHHHHhhhcCCCCcE
Confidence            9999999 458999999999999999999999999999999999999999999999999999999999976  3346778


Q ss_pred             EEEEeeecCCceeeeecCeEEEEEeccHHHHHHHHHhCCeEEeHHHHHHhCCCCCcEEEeecCCchhHHhhhhCCCCCCC
Q 029840           79 AVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVP  158 (187)
Q Consensus        79 vvv~gKVLg~G~l~~vpkl~V~A~~fS~sA~eKIekAGGki~t~dqL~~~~P~G~~v~ll~g~~~~r~~~~hfg~a~g~~  158 (187)
                      +++++||||||+|++||+|+|+|++||++|+|+||+|||+|++||||+++||+|+||+||+||+++|||++|||+|||+|
T Consensus        80 iv~~~KVLg~GeL~kvpkLtV~A~~fSksArekIEaAGG~v~~idqla~~~P~G~n~~ll~g~~~~r~a~khfg~apg~p  159 (188)
T 2zkr_o           80 AVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTP  159 (188)
T ss_dssp             EEEEEEEECSSCCCCCSSCCEEEEEECHHHHHHHHHHSSCEEEHHHHHHHCTTCCSEEEEC-------------------
T ss_pred             EEeecEEECCceecccCCeEEEEeecCHHHHHHHHHcCCEEEEhHHHHHHCCCCCceEEEecCcchHHHHHhcCCCCCCC
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccccCcchhhhccccccCCCCC
Q 029840          159 HSHTKPYVRSKGRKFERARGKRNSRGFRV  187 (187)
Q Consensus       159 ~s~~~p~v~skgrk~e~~r~~~~~~~~k~  187 (187)
                      ||||+|||+|||||||+|||||+|||||+
T Consensus       160 ~s~~~p~v~skgrk~e~~rgrr~s~~~k~  188 (188)
T 2zkr_o          160 HSHTKPYVRSKGRKFERARGRRASRGYKN  188 (188)
T ss_dssp             -----------------------------
T ss_pred             CCCCCCceeccccchhhhcccccccccCC
Confidence            99999999999999999999999999996

>4a17_N RPL18, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_N 4a1c_N 4a1e_N

Probab=100.00  E-value=8.8e-76  Score=483.63  Aligned_cols=178  Identities=58%  Similarity=0.892  Sum_probs=170.5

Q ss_pred             CceeeccCCc-cccCCCCCCCCccHHHHHHHHHHHHHhhcCCChHHHHHHHHhhcCCCCCCccchHHHhhhhccCC-CcE
Q 029840            1 MGIDLIAGGK-SKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKE-DKI   78 (187)
Q Consensus         1 mg~d~~~~~~-~~~~~rk~~~stN~~l~~Li~llk~~ar~t~sp~~rrV~kRlf~~r~~~~~VNLs~L~~~~~~~~-~k~   78 (187)
                      |||||.++++ ++++.|+.|+||||||++||++|+|+||+|++|||++||+|||||+++|+|||||+|++++++++ +++
T Consensus         1 mgid~~~~~~~~~~~~r~~~kstN~yL~~Lvklyr~larrt~apf~r~V~KRLf~sr~nr~pVnLsrI~r~~~~~e~gk~   80 (181)
T 4a17_N            1 MAIDLHKQGRVVKRSVVRQTKSTNVYHKLLIKLYKFLVRRTDSKFNQNILKRLSSSRLNKFPLSLSRIVKNLNETNKEQV   80 (181)
T ss_dssp             -CBCCGGGGCCCCCSSCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHSCCGGGSCCEEHHHHHHSCCHHHHHSE
T ss_pred             CccccccccccccccccCCCCCCCHHHHHHHHHHHHHHhhcCChHHHHHHHHHcCCccccCcccHHHHHHHhccccCCCE
Confidence            9999996555 89999999999999999999999999999999999999999999999999999999999998433 889


Q ss_pred             EEEEeeecCCceeeeecCeEEEEEeccHHHHHHHHHhCCeEEeHHHHHHhCCCCCcEEEeecCCchhHHhhhhCCCCCCC
Q 029840           79 AVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVP  158 (187)
Q Consensus        79 vvv~gKVLg~G~l~~vpkl~V~A~~fS~sA~eKIekAGGki~t~dqL~~~~P~G~~v~ll~g~~~~r~~~~hfg~a~g~~  158 (187)
                      +|+++||||||+|+++|+++|||++||++|+++||+|||+|++||||+++||+|+||+||+||+ +||||+|||+|||+|
T Consensus        81 vVv~gKVLg~G~l~~v~kl~V~A~~fS~sA~ekIe~AGG~v~~~dqLa~~~P~G~nv~ll~g~~-~rea~khfg~a~g~p  159 (181)
T 4a17_N           81 IVSTSTVTNDERLLTVPKLTVCALKFTETARKRILAAGGKCLTFDQLALKAPTGTNCFLLRAPK-SREAYRHWGKAPGQR  159 (181)
T ss_dssp             EEESSEEECCTTCCSCCCCEEECSEECHHHHHHHHTTTCEEECHHHHHHHCTTCTTEEEECCCC-CCSHHHHSSSCTTST
T ss_pred             EEEEEEEcCCceEcccCCEEEEEeecCHHHHHHHHHcCCEEEEhHHHHHhCCCCCCeEEeeCCc-hHHHHHHhccCCCCC
Confidence            9999999999999988899999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             CCCCCCcccccCcchhhhccc
Q 029840          159 HSHTKPYVRSKGRKFERARGK  179 (187)
Q Consensus       159 ~s~~~p~v~skgrk~e~~r~~  179 (187)
                      ||||+|||+|||||||+|||-
T Consensus       160 ~s~~~p~v~skgrk~e~arg~  180 (181)
T 4a17_N          160 GSHSAPYVRSEGRKFERAHGL  180 (181)
T ss_dssp             TCCCCCCCSSCSTTSSCSCCC
T ss_pred             CCCCCCceecCCcchhhhcCC
Confidence            999999999999999999984

>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O

Probab=100.00  E-value=1.2e-45  Score=287.72  Aligned_cols=119  Identities=63%  Similarity=1.026  Sum_probs=113.7

Q ss_pred             CccHHHHHHHHHHHHHhhcCCChHHHHHHHHhhcCCCCCCccchHHHhhhhcc--CCCcEEEEEeeecCCceeeeecCeE
Q 029840           21 SNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKG--KEDKIAVVVGTVTDDIRVYEVPALK   98 (187)
Q Consensus        21 stN~~l~~Li~llk~~ar~t~sp~~rrV~kRlf~~r~~~~~VNLs~L~~~~~~--~~~k~vvv~gKVLg~G~l~~vpkl~   98 (187)
                      ||||||++||++|+|+||+|++|||++||||||||+++|++||||+|++++++  .+++++++++||||||+|+++|+++
T Consensus         1 s~n~~l~~lvkl~~~lar~t~apl~rrvpKRgF~sr~~~~~VnLs~L~~~~~~~g~~g~~vvv~~KVlg~G~l~~~~kl~   80 (121)
T 3jyw_O            1 SDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTT   80 (121)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSCCHHHHHHHHTTTSCSTTSCCBCHHHHHHHTTTTSCSSSEEEESSCBCCCSCCCSSSCCC
T ss_pred             CCCHHHHHHHHHHHHHHhhcCChHHHHHHHHHCCCCCccceEEHHHHHHHhhccCCCCCEEEEEEEEcCCceEcccCCEE
Confidence            79999999999999999999999999999999999999999999999999873  3678888999999999999777999


Q ss_pred             EEEEeccHHHHHHHHHhCCeEEeHHHHHHhCCCCCcEEEee
Q 029840           99 VTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLR  139 (187)
Q Consensus        99 V~A~~fS~sA~eKIekAGGki~t~dqL~~~~P~G~~v~ll~  139 (187)
                      |+|++||++|+++||+|||+|++||||++++|+|+||+||+
T Consensus        81 V~a~~fS~~A~~kIe~AGG~~~~~dql~~~~P~G~~~~llr  121 (121)
T 3jyw_O           81 VAALRFTAGARAKIVKAGGECITLDQLAVRAPKGQNTLILR  121 (121)
T ss_dssp             EECSSBCTTTTTHHHHHTCCBCCSTTHHHHCTTCSSEEEEC
T ss_pred             EEEEecCHHHHHHHHHcCCEEEEHHHHHHHCCCCCCeEEeC
Confidence            99999999999999999999999999999999999999985

>3j21_P 50S ribosomal protein L18E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=2.1e-43  Score=274.48  Aligned_cols=120  Identities=24%  Similarity=0.384  Sum_probs=114.9

Q ss_pred             CCCCCCccHHHHHHHHHHHHHhhcCCChHHHHHHHHhhcCCCCCCccchHHHhhhhccCCCcEEEEEeeecCCceeeeec
Q 029840           16 RTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVP   95 (187)
Q Consensus        16 rk~~~stN~~l~~Li~llk~~ar~t~sp~~rrV~kRlf~~r~~~~~VNLs~L~~~~~~~~~k~vvv~gKVLg~G~l~~vp   95 (187)
                      |+.+.||||||++||++|+|+||+|++|||++||||||+|+++|++|||++|+++++  +++++++++||||+|+|+.  
T Consensus         1 ~~~~~~~n~~l~~li~~~~~~~r~~~~Pl~rrlpKrgF~~r~~~~~VnL~~L~~~~~--~g~~i~~~vKVLg~G~l~~--   76 (120)
T 3j21_P            1 MKRTGPTDPNLRRLIRYLRKKSNEYGVKIWKDVAWRLERPRRQRAEVNVSKINRYAN--DGEMIVVPGSVLGAGKLEK--   76 (120)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHSCTTSSEEEEHHHHTTSSC--TTCEEEEEEEEECSSCCCS--
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhccCCcHHHHHHhhcCCCCCcceeEEHHHHHHHHh--cCCEEEEEEEEcCCCeecC--
Confidence            456889999999999999999999999999999999999999999999999999986  6788888999999999997  


Q ss_pred             CeEEEEEeccHHHHHHHHHhCCeEEeHHHHHHhCCCCCcEEEee
Q 029840           96 ALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLR  139 (187)
Q Consensus        96 kl~V~A~~fS~sA~eKIekAGGki~t~dqL~~~~P~G~~v~ll~  139 (187)
                      +++|+|++||++|+++||+|||+|+++|||++++|+|+||+||+
T Consensus        77 kl~V~a~~fS~~A~ekIe~AGG~v~~~~qL~~~~p~g~~~~l~~  120 (120)
T 3j21_P           77 KVIVAAWKFSETARRKIIEAGGEAITIEELIERNPTGSGVRIME  120 (120)
T ss_dssp             CCEEEEEEECHHHHHHHTTTSSCEEESTTHHHHCSSCSSEEECC
T ss_pred             CEEEEEeccCHHHHHHHHHcCCEEEEeHHHHHHCCCCCCeEEeC
Confidence            99999999999999999999999999999999999999999984

>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ...

Probab=100.00  E-value=9.1e-39  Score=247.06  Aligned_cols=115  Identities=22%  Similarity=0.348  Sum_probs=109.6

Q ss_pred             CCccHHHHHHHHHHHHHhhcCCChHHHHHHHHhhcCCCCCCccchHHHhhhhccCCCcEEEEEeeecCCceeeeecCeEE
Q 029840           20 KSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKV   99 (187)
Q Consensus        20 ~stN~~l~~Li~llk~~ar~t~sp~~rrV~kRlf~~r~~~~~VNLs~L~~~~~~~~~k~vvv~gKVLg~G~l~~vpkl~V   99 (187)
                      .||||||++||++|+|+||+|++|||+|+||||++++++|++|||++|+++++  +++++++++||||+|+|++  +++|
T Consensus         2 ~~~n~~l~~li~~~~~~~r~~~~Pl~rRlPKrG~~~~~~~~~VnL~~L~~~~~--~g~~ilv~vKVLg~G~l~k--~l~V   77 (116)
T 1vq8_O            2 SKTNPRLSSLIADLKSAARSSGGAVWGDVAERLEKPRRTHAEVNLGRIERYAQ--EDETVVVPGKVLGSGVLQK--DVTV   77 (116)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHSSCHHHHHHHHHHTSCTTTSEEEEHHHHHHHCC--TTSEEEEEEEEECCSCCCS--CCEE
T ss_pred             CCCCHHHHHHHHHHHHHHhccCCCHhhhcccCCCCCCceeeeEeHHHHHHHcc--CCCEEEEEEEEeeCCeecC--CEEE
Confidence            48999999999999999999999999999999988899999999999999876  6677777999999999998  9999


Q ss_pred             EEEeccHHHHHHHHHhCCeEEeHHHHHHhCCCCCcEEEee
Q 029840          100 TALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLR  139 (187)
Q Consensus       100 ~A~~fS~sA~eKIekAGGki~t~dqL~~~~P~G~~v~ll~  139 (187)
                      +|++||++|+|+||+| |+|+++|||+++||+|+||+||.
T Consensus        78 ~a~~fSk~A~ekIeaA-G~v~~~~~l~~~~p~g~~~~l~~  116 (116)
T 1vq8_O           78 AAVDFSGTAETKIDQV-GEAVSLEQAIENNPEGSHVRVIR  116 (116)
T ss_dssp             EEEEECHHHHHHHHHH-SEEEEHHHHHHHCTTCCSEEECC
T ss_pred             EEEecCHHHHHHHHHc-CeEEEhHHHHHHCCCCCCeEEeC
Confidence            9999999999999999 99999999999999999999984

>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_L 3j19_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L* 3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L ...

Probab=99.66  E-value=5.4e-18  Score=135.10  Aligned_cols=75  Identities=28%  Similarity=0.265  Sum_probs=65.6

Q ss_pred             CCChHHHHHHHHhhcC--CCCCCccchHHHhhhhccCCCcEE--------------EEEeeecCCceeeeecCeEEEEEe
Q 029840           40 TDSNFDKVILKRLFMS--KVNKPPMSLSRLTKFMKGKEDKIA--------------VVVGTVTDDIRVYEVPALKVTALR  103 (187)
Q Consensus        40 t~sp~~rrV~kRlf~~--r~~~~~VNLs~L~~~~~~~~~k~v--------------vv~gKVLg~G~l~~vpkl~V~A~~  103 (187)
                      -.+|||+|+|||+|.+  ++.|.+|||++|+++.    +++|              ...+||||+|+|+.  +|+|.|++
T Consensus        52 GQ~Pl~rRlPK~GF~~~~~~~y~~VNL~~L~~~~----~~~I~~~~L~~~glv~~~~~~VKVLg~Gel~~--~l~V~a~~  125 (143)
T 3r8s_L           52 GQMPLYRRLPKFGFTSRKAAITAEIRLSDLAKVE----GGVVDLNTLKAANIIGIQIEFAKVILAGEVTT--PVTVRGLR  125 (143)
T ss_dssp             TSCCHHHHSCCCCCCCSTGGGEEECCSSSSSCSS----SSEEEHHHHGGGTSSCTTCCEEECCCCSCCCS--CCEEESSC
T ss_pred             CCCccEEEccccccCCcccceeEEEEHHHhhhcc----CCeecHHHHHHcCccccCCCceEEeeCCcccc--cEEEEEEe
Confidence            3579999999999997  6789999999999863    2333              13799999999998  99999999


Q ss_pred             ccHHHHHHHHHhCCeEE
Q 029840          104 FTETARARIEKAGGECL  120 (187)
Q Consensus       104 fS~sA~eKIekAGGki~  120 (187)
                      ||++|+++||+|||+|+
T Consensus       126 ~SksA~ekIEaAGG~v~  142 (143)
T 3r8s_L          126 VTKGARAAIEAAGGKIE  142 (143)
T ss_dssp             CCHHHHHHHHTTTCEEE
T ss_pred             cCHHHHHHHHHcCCEEe
Confidence            99999999999999986

>3v2d_P 50S ribosomal protein L15; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ...

Probab=99.56  E-value=2.3e-16  Score=126.62  Aligned_cols=75  Identities=20%  Similarity=0.192  Sum_probs=65.2

Q ss_pred             CCChHHHHHHHHhhcC-------CCCCCccchHHHhhhhccCCCcEE-------------EEEeeecCCceeeeecCeEE
Q 029840           40 TDSNFDKVILKRLFMS-------KVNKPPMSLSRLTKFMKGKEDKIA-------------VVVGTVTDDIRVYEVPALKV   99 (187)
Q Consensus        40 t~sp~~rrV~kRlf~~-------r~~~~~VNLs~L~~~~~~~~~k~v-------------vv~gKVLg~G~l~~vpkl~V   99 (187)
                      -.+|||+|+|||+|.+       ++.|.+|||++|++ ++   + +|             .+.+||||+|+|+   +|+|
T Consensus        54 GQ~Pl~rRlPK~GF~~~~~~~~~~~~y~~VNL~~L~~-~~---G-~I~~~~L~~~glv~~~~~VKvLg~G~l~---~v~V  125 (150)
T 3v2d_P           54 GRSTTLMRLPKRGMQGQVPGEIKRPRYQGVNLKDLAR-FE---G-EVTPELLVRAGLLKKGYRLKILGEGEAK---PLKV  125 (150)
T ss_dssp             TSCCTTTTSCCCSCCCCTTCCCCCCCEEEEEHHHHTT-CC---S-EECHHHHHTTTSSCTTCEEEEECSSCCC---SCEE
T ss_pred             CCCccEEEcCccCccCccccccccceEEEEEHHHHhh-cC---C-cccHHHHHHCCCcccccceEEEecCCcc---cEEE
Confidence            3579999999999998       67899999999998 43   2 22             1379999999988   8999


Q ss_pred             EEEeccHHHHHHHHHhCCeEEeH
Q 029840          100 TALRFTETARARIEKAGGECLTF  122 (187)
Q Consensus       100 ~A~~fS~sA~eKIekAGGki~t~  122 (187)
                      .|..||++|+++||+|||+|+++
T Consensus       126 ~a~~~S~~A~~kIe~aGG~v~~~  148 (150)
T 3v2d_P          126 VAHAFSKSALEKLKAAGGEPVLL  148 (150)
T ss_dssp             CBSCBCHHHHHHHHHTTCBCCBC
T ss_pred             EEEEcCHHHHHHHHHcCCEEEEe
Confidence            99999999999999999999875

>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M

Probab=99.53  E-value=1.4e-16  Score=128.43  Aligned_cols=80  Identities=18%  Similarity=0.114  Sum_probs=66.8

Q ss_pred             CChHHHHHHHHhhcC-CCCCCccchHHHhhhhccC-CCcEE---------EEEeeecCCceeeeecCeEEEEEeccHHHH
Q 029840           41 DSNFDKVILKRLFMS-KVNKPPMSLSRLTKFMKGK-EDKIA---------VVVGTVTDDIRVYEVPALKVTALRFTETAR  109 (187)
Q Consensus        41 ~sp~~rrV~kRlf~~-r~~~~~VNLs~L~~~~~~~-~~k~v---------vv~gKVLg~G~l~~vpkl~V~A~~fS~sA~  109 (187)
                      .+|+|+++||++|.+ +..|++|||++|+++.++. +-+++         ...+||||+|+|+.  +|+|.|..||++|+
T Consensus        53 Q~Pl~rrlPK~GF~n~~~~~~~VNL~~L~~l~~~~i~~~~L~~~gli~~~~~~vKVLG~G~l~~--~l~Vka~~fSk~A~  130 (156)
T 2zjr_I           53 RSRLIARLPKRGFNNVGTTYEVVKLSQLQDLEDTTFDRDTLEAYRLVRRKNRPVKLLASGEISR--AVTVHVDAASAAAI  130 (156)
T ss_dssp             SSSSTTTSCCCCCCCCCCCCCEECHHHHTTSCCCCCCTTTTHHHHHCCCCSSCCEECCCCCCCC--CCCCCCSEECHHHH
T ss_pred             cCCCeEecCCCCCcCCceEEEeechhHHHhhhcCCcCHHHHHhCCcEeccccceEEeeCCccCc--CeEEEEEecCHHHH
Confidence            689999999999997 6779999999999875421 00111         13689999999997  99999999999999


Q ss_pred             HHHHHhCCeEEeH
Q 029840          110 ARIEKAGGECLTF  122 (187)
Q Consensus       110 eKIekAGGki~t~  122 (187)
                      |+||+|||+|+++
T Consensus       131 ekIEaAGG~v~~i  143 (156)
T 2zjr_I          131 KAVEAAGGRVVLP  143 (156)
T ss_dssp             HHHGGGSCCCCCC
T ss_pred             HHHHHcCCEEEEe
Confidence            9999999999754

>3j21_L 50S ribosomal protein L15P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.52  E-value=7e-15  Score=117.48  Aligned_cols=73  Identities=22%  Similarity=0.278  Sum_probs=61.3

Q ss_pred             HHHHHhhcC----CCCCCccchHHHhhhhcc--------CCCcEEEEE-----eeecCCceeeeecCeEEEEEeccHHHH
Q 029840           47 VILKRLFMS----KVNKPPMSLSRLTKFMKG--------KEDKIAVVV-----GTVTDDIRVYEVPALKVTALRFTETAR  109 (187)
Q Consensus        47 rV~kRlf~~----r~~~~~VNLs~L~~~~~~--------~~~k~vvv~-----gKVLg~G~l~~vpkl~V~A~~fS~sA~  109 (187)
                      +++|++|++    +.+|++|||++|+++++.        .+++.+|+.     +||||+|+|+.  +|+|.|..||++|+
T Consensus        57 ~~pK~GF~n~~~~~~~~~~VNL~~L~~l~~~L~~~gli~~~~~~~vid~~~~GvKVLG~G~l~~--~v~Vka~~fS~~A~  134 (147)
T 3j21_L           57 HLGKRGFSRPPEVQREVRVVNLKFIDEHLDELMQMGIAYEEGGKIIVDVTQFADKVLGTGKLTR--PLVIKARAFSPKAE  134 (147)
T ss_dssp             CSCCCSCCCCTTTCCCCCEEEHHHHHHTTTTTTTSCCCSSSSBSEEEEGGGGCCEEECCSCCSS--CEEEEESEECHHHH
T ss_pred             cCCcCCCCccccccceeEEEEHHHHHHHHHHHHHcCcccccCCcceecccccCcEEecCCccCc--CEEEEEEecCHHHH
Confidence            578999986    468999999999987652        123444444     89999999998  99999999999999


Q ss_pred             HHHHHhCCeEEe
Q 029840          110 ARIEKAGGECLT  121 (187)
Q Consensus       110 eKIekAGGki~t  121 (187)
                      |+||+|||+|++
T Consensus       135 ekIeaaGG~v~~  146 (147)
T 3j21_L          135 EKIKAAGGEAVL  146 (147)
T ss_dssp             HHHHHTTCEEEE
T ss_pred             HHHHHcCCEEEe
Confidence            999999999975

>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ...

Probab=99.51  E-value=2.5e-15  Score=121.98  Aligned_cols=77  Identities=21%  Similarity=0.225  Sum_probs=63.7

Q ss_pred             hHHHHHHHHhhcC----CCCCCccchHHHhhhhcc---------CCCcEEE------------EEeeecCCceeeeecCe
Q 029840           43 NFDKVILKRLFMS----KVNKPPMSLSRLTKFMKG---------KEDKIAV------------VVGTVTDDIRVYEVPAL   97 (187)
Q Consensus        43 p~~rrV~kRlf~~----r~~~~~VNLs~L~~~~~~---------~~~k~vv------------v~gKVLg~G~l~~vpkl   97 (187)
                      ||++ +||++|.+    +..|++|||++|+.++..         +++..+|            ..+||||+|+|+.  +|
T Consensus        43 pl~k-lPK~GF~~~~~~r~~~~~VNL~~L~~l~~~~~~~g~~~~~~~~~vId~~~L~~~gli~~~vKVLG~G~l~k--~l  119 (165)
T 1vq8_L           43 NHEP-LGKSGFKRPQKVQEEAATIDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEADDADYVKVLGAGQVRH--EL  119 (165)
T ss_dssp             TSCC-SCCCCCCCCGGGCCCEEEEEHHHHHHTTGGGTTSCCCC-----CEEEGGGTCTTCTTSSEEEEECCSCCCS--CC
T ss_pred             eeeE-CCCCCCccCCcccceeeeEEHHHHHHHHHHhhhccccccCCCCeEECHHHHHHCCccCCceEEecCCccCC--CE
Confidence            8888 99999998    267999999999988620         1221133            3579999999998  99


Q ss_pred             EEEEEeccHHHHHHHHHhCCeEEeH
Q 029840           98 KVTALRFTETARARIEKAGGECLTF  122 (187)
Q Consensus        98 ~V~A~~fS~sA~eKIekAGGki~t~  122 (187)
                      +|.|..||++|+++||+|||+|+++
T Consensus       120 ~Vka~~fSk~A~ekIeaAGG~v~~i  144 (165)
T 1vq8_L          120 TLIADDFSEGAREKVEGAGGSVELT  144 (165)
T ss_dssp             EEEESEECHHHHHHHHHTTCEEEEC
T ss_pred             EEEEEecCHHHHHHHHHcCCEEEEe
Confidence            9999999999999999999999876

>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.42  E-value=3.1e-14  Score=113.34  Aligned_cols=74  Identities=16%  Similarity=0.187  Sum_probs=50.3

Q ss_pred             HHHHhhcCC----C-CC-CccchHHHhhhhccC---CCc--E-----EE-----EEeeecCCceeeeecCeEEEEEeccH
Q 029840           48 ILKRLFMSK----V-NK-PPMSLSRLTKFMKGK---EDK--I-----AV-----VVGTVTDDIRVYEVPALKVTALRFTE  106 (187)
Q Consensus        48 V~kRlf~~r----~-~~-~~VNLs~L~~~~~~~---~~k--~-----vv-----v~gKVLg~G~l~~vpkl~V~A~~fS~  106 (187)
                      +||++|++.    . .| ++|||++|+.+.++.   +-.  .     ++     .++||||+|+|++ .+|+|.|..||+
T Consensus        53 lpK~GF~~~~~~~~~~~~~~VNl~~L~~l~~~~~~~~~~~~l~~~~~vI~~~~~~~vKVLG~Gel~k-~~l~Vka~~fSk  131 (148)
T 2zkr_l           53 FGKVGMKHYHLKRNQSFCPTVNLDKPWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSR  131 (148)
T ss_dssp             ---------------CCCCEEETHHHHHHTTTTTSSCTTTTEEEHHHHSTTCSSSCCEEECCSCCCS-SCCEEEESEECH
T ss_pred             CCCCCcCCCCccccceecceEEHHHHHhhhhcCcEEehhhhccccCCeEeccccCceEEecCCcccc-CCEEEEEEecCH
Confidence            999999982    1 34 899999999885421   111  1     11     1379999999985 599999999999


Q ss_pred             HHHHHHHHhCCeEEeH
Q 029840          107 TARARIEKAGGECLTF  122 (187)
Q Consensus       107 sA~eKIekAGGki~t~  122 (187)
                      +|+|+||+|||+|+++
T Consensus       132 ~A~ekIeaAGG~v~~~  147 (148)
T 2zkr_l          132 RAEEKIKSVGGACVLV  147 (148)
T ss_dssp             HHHHHHHHTTCEEEEC
T ss_pred             HHHHHHHHcCCEEEec
Confidence            9999999999999864

>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=99.37  E-value=1.2e-15  Score=131.57  Aligned_cols=81  Identities=14%  Similarity=0.172  Sum_probs=66.1

Q ss_pred             CCChHHHHHHH-HhhcC-----CCCCCccchHHHhhh-hcc-C--CCc------E-------EEEEeeecCCceeeeecC
Q 029840           40 TDSNFDKVILK-RLFMS-----KVNKPPMSLSRLTKF-MKG-K--EDK------I-------AVVVGTVTDDIRVYEVPA   96 (187)
Q Consensus        40 t~sp~~rrV~k-Rlf~~-----r~~~~~VNLs~L~~~-~~~-~--~~k------~-------vvv~gKVLg~G~l~~vpk   96 (187)
                      -.+|||+++|| |+|.+     ++.|.+|||++|+++ +++ +  +-+      +       ....+||||+|+|+.  +
T Consensus       117 GQmPl~rRlPK~rGF~n~~~~~r~~y~~VNL~kL~~lr~~eg~~Idle~L~~aGlI~~~gr~~~~~VKVLG~GeLtk--k  194 (257)
T 3bbo_N          117 GQMPLYRRLPKLRGIAGGMHAGLPKYVNVNLTDIENAGFQDGEEVSLETLKAKRVINPSGRERKLPLKILADGELSK--K  194 (257)
T ss_dssp             SCSSTTSCCCCCSSCCCCCSSCCSSSSCSCSSCCSCSSTTTTTTTCCSSCCSSSCSSSSCCCCSCCCCCCCSSCCCS--S
T ss_pred             CCCcchhhcccccccCCccccCcceeeeEeHHHHhhcccCCCCEeCHHHHHhCCcccccccccCccEEEEeCCccCC--C
Confidence            34899999999 88886     468999999999974 431 1  000      1       113589999999998  9


Q ss_pred             eEEEEEeccHHHHHHHHHhCCeEEeH
Q 029840           97 LKVTALRFTETARARIEKAGGECLTF  122 (187)
Q Consensus        97 l~V~A~~fS~sA~eKIekAGGki~t~  122 (187)
                      |+|.|..||++|+|+||+|||+|+++
T Consensus       195 LtVkA~~fSksA~eKIEaAGG~v~~i  220 (257)
T 3bbo_N          195 LTIKAGAFSTSAKEKLEYAGCSLIVL  220 (257)
T ss_dssp             CCCCSSCCTGGGTTSSTTTTCCEECC
T ss_pred             eEEEEEecCHHHHHHHHHcCCEEEEe
Confidence            99999999999999999999999877

>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K

Probab=99.27  E-value=1.2e-12  Score=104.68  Aligned_cols=74  Identities=20%  Similarity=0.248  Sum_probs=58.5

Q ss_pred             HHHHHhhcC------CCCCCccchHHHhhhhcc--------CCC-cEEEE-----EeeecCCcee-eeecCeEEEEEecc
Q 029840           47 VILKRLFMS------KVNKPPMSLSRLTKFMKG--------KED-KIAVV-----VGTVTDDIRV-YEVPALKVTALRFT  105 (187)
Q Consensus        47 rV~kRlf~~------r~~~~~VNLs~L~~~~~~--------~~~-k~vvv-----~gKVLg~G~l-~~vpkl~V~A~~fS  105 (187)
                      ...|++|++      +..+++|||++|+.++.+        .++ ..+++     .+||||+|+| +.  +|+|.|..||
T Consensus        54 ~fGK~Gfr~~h~~~n~~~~~~VNLdkL~~l~~~~~~~~~~~~~~~~~vId~~~~g~~KvLG~G~l~~~--~v~v~a~~fS  131 (149)
T 4a17_K           54 YYGKLGMRTFHLKKNPLHCPVVNIDKLWSLVSDATRQKYAEDKKKVPVIDVTKAGFFKVLGKGRLPNQ--PVVVKAKYFS  131 (149)
T ss_dssp             CSSCCSCCCSSCCCGGGCCCEEEGGGHHHHSCHHHHHHHHHCCSSCCEEEHHHHTCCEEECCSCCCSS--CCEEEESEEC
T ss_pred             cCCCCCccCCCccCCcceeeEEEHHHHHHHhhhhcchhhhhhcCCceEEEeccCCeEEEecCCccCCC--CEEEEEeecC
Confidence            346788876      234689999999887642        122 33454     5899999999 76  9999999999


Q ss_pred             HHHHHHHHHhCCeEEeH
Q 029840          106 ETARARIEKAGGECLTF  122 (187)
Q Consensus       106 ~sA~eKIekAGGki~t~  122 (187)
                      ++|+|+||+|||+|+++
T Consensus       132 ~~A~~kIe~aGG~~~~~  148 (149)
T 4a17_K          132 KTAERRIVAVGGACVLT  148 (149)
T ss_dssp             HHHHHHHHHTTCEEEEC
T ss_pred             HHHHHHHHHcCCEEEEe
Confidence            99999999999999763

>3o58_Y 60S ribosomal protein L28; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3o5h_Y 3izc_O 3izs_O 3u5e_a 3u5i_a 4b6a_a 1s1i_V 3jyw_V

Probab=99.08  E-value=1.3e-11  Score=98.94  Aligned_cols=62  Identities=21%  Similarity=0.302  Sum_probs=50.3

Q ss_pred             CCccchHHHhhhhccC----------CCc-EEEE-----EeeecCCcee-eeecCeEEEEEeccHHHHHHHHHhCCeEEe
Q 029840           59 KPPMSLSRLTKFMKGK----------EDK-IAVV-----VGTVTDDIRV-YEVPALKVTALRFTETARARIEKAGGECLT  121 (187)
Q Consensus        59 ~~~VNLs~L~~~~~~~----------~~k-~vvv-----~gKVLg~G~l-~~vpkl~V~A~~fS~sA~eKIekAGGki~t  121 (187)
                      .++|||++|..++.+.          +++ .+++     ++||||+|+| +.  +|+|.|..||++|+++||+|||+|+.
T Consensus        70 ~~~INldkL~~lv~~~~~~~~a~~~~~~~~~vID~~~~g~vKVLG~G~l~~~--~v~Vka~~fS~~A~ekIe~aGG~~~~  147 (149)
T 3o58_Y           70 KPVLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIPNV--PVIVKARFVSKLAEEKIRAAGGVVEL  147 (149)
T ss_dssp             CCSTTTTHHHHCSSCCSCSSCTTSSTTSSCCBCCCSSSCSCCCCCCCCCCSC--CEEECSSCCTTTTHHHHGGGSCEEEC
T ss_pred             cceEEHHHHHHHhHHHHhhhhhhhccCCCCcEEEEecccceEEEcCCccCCC--CEEEEEeecCHHHHHHHHHcCCEEEE
Confidence            4799999998876421          122 2332     5899999999 76  99999999999999999999999976


Q ss_pred             H
Q 029840          122 F  122 (187)
Q Consensus       122 ~  122 (187)
                      +
T Consensus       148 ~  148 (149)
T 3o58_Y          148 I  148 (149)
T ss_dssp             C
T ss_pred             c
Confidence            3

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	187
d1vqoo1	115	c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeo	8e-34
d2zjri1	141	c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {D	0.001

>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 115

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L18e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  114 bits (286), Expect = 8e-34
 Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 5/119 (4%)

Query: 21  SNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAV 80
             +  L  L+   +   R +       + +RL   +     ++L R+ ++   +ED+  V
Sbjct: 2   KTNPRLSSLIADLKSAARSSGGAVWGDVAERLEKPRRTHAEVNLGRIERYA--QEDETVV 59

Query: 81  VVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLR 139
           V G V     +     + V A+ F+ TA  +I++ G   ++ +Q     P G +  ++R
Sbjct: 60  VPGKVLGSGVL--QKDVTVAAVDFSGTAETKIDQVGE-AVSLEQAIENNPEGSHVRVIR 115

>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {Deinococcus radiodurans [TaxId: 1299]} Length = 141

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 35.3 bits (81), Expect = 0.001
 Identities = 16/112 (14%), Positives = 35/112 (31%), Gaps = 7/112 (6%)

Query: 8   GGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRL 67
           G KS+              +L+ +L +       + ++ V L +L   +           
Sbjct: 33  GQKSRSGAGKGAFFEGGRSRLIARLPKRGFNNVGTTYEVVKLSQLQDLEDTTFDRDTLEA 92

Query: 68  TKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGEC 119
            + ++ K   + ++              A+ V     +  A   +E AGG  
Sbjct: 93  YRLVRRKNRPVKLLASGEISR-------AVTVHVDAASAAAIKAVEAAGGRV 137

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	187
d1vqoo1	115	Ribosomal protein L18e {Archaeon Haloarcula marism	100.0
d2zjri1	141	Ribosomal protein L15 (L15p) {Deinococcus radiodur	99.49
d2j01p1	146	Ribosomal protein L15 (L15p) {Thermus thermophilus	99.38
d1vqol1	150	Ribosomal protein L15 (L15p) {Archaeon Haloarcula	99.34
d2gycj1	140	Ribosomal protein L15 (L15p) {Escherichia coli [Ta	99.21

>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L18e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=5.8e-42  Score=263.12  Aligned_cols=114  Identities=21%  Similarity=0.338  Sum_probs=110.5

Q ss_pred             CccHHHHHHHHHHHHHhhcCCChHHHHHHHHhhcCCCCCCccchHHHhhhhccCCCcEEEEEeeecCCceeeeecCeEEE
Q 029840           21 SNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVT  100 (187)
Q Consensus        21 stN~~l~~Li~llk~~ar~t~sp~~rrV~kRlf~~r~~~~~VNLs~L~~~~~~~~~k~vvv~gKVLg~G~l~~vpkl~V~  100 (187)
                      +|||||++||++|+++||++++|||++|++||++|+++|++||||+|+++++  +++++|+||||||+|+|++  +++||
T Consensus         2 kTNp~l~~lI~~lk~~sr~~~a~iwk~va~rL~~~rr~r~~VnLski~~~~k--~~~~vvvpgKVLg~G~l~~--k~~V~   77 (115)
T d1vqoo1           2 KTNPRLSSLIADLKSAARSSGGAVWGDVAERLEKPRRTHAEVNLGRIERYAQ--EDETVVVPGKVLGSGVLQK--DVTVA   77 (115)
T ss_dssp             CCCHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHSCGGGSEEEEHHHHHHHCC--TTSEEEEEEEEECCSCCCS--CCEEE
T ss_pred             CCCHHHHHHHHHHHHHHhhhcCHHHHHHHHHHhcccccCCCccHHHHHHhcc--CCCEEEEeeEEecccEEcC--CEEEE
Confidence            6899999999999999999999999999999999999999999999999998  8999999999999999997  99999


Q ss_pred             EEeccHHHHHHHHHhCCeEEeHHHHHHhCCCCCcEEEee
Q 029840          101 ALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLR  139 (187)
Q Consensus       101 A~~fS~sA~eKIekAGGki~t~dqL~~~~P~G~~v~ll~  139 (187)
                      |++||++|+++|++||| |++|+||++.||+|+||+||+
T Consensus        78 A~~fS~sA~~kI~~aGg-~iti~el~~~nP~G~~v~ilr  115 (115)
T d1vqoo1          78 AVDFSGTAETKIDQVGE-AVSLEQAIENNPEGSHVRVIR  115 (115)
T ss_dssp             EEEECHHHHHHHHHHSE-EEEHHHHHHHCTTCCSEEECC
T ss_pred             EeecCHHHHHHHHHcCC-EEEHHHHHHHCCCCCCeEEeC
Confidence            99999999999999965 899999999999999999985

>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.49  E-value=1.7e-16  Score=123.25  Aligned_cols=81  Identities=17%  Similarity=0.108  Sum_probs=67.5

Q ss_pred             CCChHHHHHHHHhhcC-CCCCCccchHHHhhhhccC-CCcEE---------EEEeeecCCceeeeecCeEEEEEeccHHH
Q 029840           40 TDSNFDKVILKRLFMS-KVNKPPMSLSRLTKFMKGK-EDKIA---------VVVGTVTDDIRVYEVPALKVTALRFTETA  108 (187)
Q Consensus        40 t~sp~~rrV~kRlf~~-r~~~~~VNLs~L~~~~~~~-~~k~v---------vv~gKVLg~G~l~~vpkl~V~A~~fS~sA  108 (187)
                      -..|||+++|||+|++ +++|.+|||++|+.+.+.. +.+++         ...+||||+|+|+.  +++|.|.+||++|
T Consensus        49 GQ~Pl~rrlPKrGf~~~~~~~~~inl~~l~~~~~~~i~~~~L~~~~li~~~~~~VKiLg~Gel~~--kl~I~v~~~S~sA  126 (141)
T d2zjri1          49 GRSRLIARLPKRGFNNVGTTYEVVKLSQLQDLEDTTFDRDTLEAYRLVRRKNRPVKLLASGEISR--AVTVHVDAASAAA  126 (141)
T ss_dssp             CSSSSTTTSCCCCCCCCCCCCCEECHHHHTTSCCCCCCTTTTHHHHHCCCCSSCCEECCCCCCCC--CCCCCCSEECHHH
T ss_pred             ccccceecCCccCCCcccceEEEEEhhhhhcccccchhhhhhhhhceeccCCCCeEEccCCcccC--CEEEEEEEeCHHH
Confidence            4569999999999998 6789999999998775422 11111         12689999999998  9999999999999


Q ss_pred             HHHHHHhCCeEEeH
Q 029840          109 RARIEKAGGECLTF  122 (187)
Q Consensus       109 ~eKIekAGGki~t~  122 (187)
                      +++||+|||+|+.+
T Consensus       127 ~~~IE~aGG~V~l~  140 (141)
T d2zjri1         127 IKAVEAAGGRVVLP  140 (141)
T ss_dssp             HHHHGGGSCCCCCC
T ss_pred             HHHHHHCCCEEEee
Confidence            99999999999764

>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Thermus thermophilus [TaxId: 274]

Probab=99.38  E-value=1.7e-15  Score=117.97  Aligned_cols=80  Identities=20%  Similarity=0.223  Sum_probs=63.9

Q ss_pred             CChHHHHHHHHhhcC-------CCCCCccchHHHhhhhccCCCcEE--------EEEeeecCCceeeeecCeEEEEEecc
Q 029840           41 DSNFDKVILKRLFMS-------KVNKPPMSLSRLTKFMKGKEDKIA--------VVVGTVTDDIRVYEVPALKVTALRFT  105 (187)
Q Consensus        41 ~sp~~rrV~kRlf~~-------r~~~~~VNLs~L~~~~~~~~~k~v--------vv~gKVLg~G~l~~vpkl~V~A~~fS  105 (187)
                      ..|||+++||++|.+       +.++.+|||++|+++....+.+++        -..+||||+|++ .  +++|.|..||
T Consensus        51 Q~Pl~rrlPK~Gf~~~~~~~~~~~~~~~inl~~l~~~~~~~~~~~l~~~glik~~~~vKvLg~Ge~-k--~i~I~v~~~S  127 (146)
T d2j01p1          51 RSTTLMRLPKRGMQGQVPGEIKRPRYQGVNLKDLARFEGEVTPELLVRAGLLKKGYRLKILGEGEA-K--PLKVVAHAFS  127 (146)
T ss_dssp             SCTTCCSCCCCCSCCCSSCSCCCCCEEEEETTTTTTSCSCCCTTTTTTSSSCSSCCEEEEECSSCC-C--SSCCCCSBCC
T ss_pred             CCCceeccchhhhhcccccceeeEEeehhhhhhhhhcccchhhHHHHHhCccccCceEEEecCCce-E--eEEEEEEEeC
Confidence            479999999999997       356778999999766432111111        125899999997 4  8999999999


Q ss_pred             HHHHHHHHHhCCeEEeHH
Q 029840          106 ETARARIEKAGGECLTFD  123 (187)
Q Consensus       106 ~sA~eKIekAGGki~t~d  123 (187)
                      ++|+|+||+|||+|+.++
T Consensus       128 ksA~ekIEkaGG~v~il~  145 (146)
T d2j01p1         128 KSALEKLKAAGGEPVLLE  145 (146)
T ss_dssp             HHHHHHHHTSCCCCCCCC
T ss_pred             HHHHHHHHHcCCEEEEee
Confidence            999999999999998764

>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.34  E-value=6.6e-14  Score=108.31  Aligned_cols=80  Identities=21%  Similarity=0.154  Sum_probs=62.6

Q ss_pred             hHHHHHHHHhhcC----CCCCCccchHHHhhhhccC--------CCcEEE-------------EEeeecCCceeeeecCe
Q 029840           43 NFDKVILKRLFMS----KVNKPPMSLSRLTKFMKGK--------EDKIAV-------------VVGTVTDDIRVYEVPAL   97 (187)
Q Consensus        43 p~~rrV~kRlf~~----r~~~~~VNLs~L~~~~~~~--------~~k~vv-------------v~gKVLg~G~l~~vpkl   97 (187)
                      +.|+++++|+|.+    +.++.+|||.+|+.+.+.-        ++.+.+             .++||||+|+|+.  +|
T Consensus        41 ~g~~~lpK~g~~~~~~~~~~~~~inl~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vKlLG~G~l~~--~l  118 (150)
T d1vqol1          41 HNHEPLGKSGFKRPQKVQEEAATIDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEADDADYVKVLGAGQVRH--EL  118 (150)
T ss_dssp             TTSCCSSCCCCCCCGGGCCCEEEEEHHHHHHTTTTCTTSCCCC-----CEEEGGGTCTTCSSSSEEEEECCSCCCS--CC
T ss_pred             cCCccCCccCccccccccceeeeccHHHHHHHHhhhccccccccccchhhHHHHhhccccccccceEEecCCccCc--CE
Confidence            3456677877764    5789999999999876521        111111             2579999999998  99


Q ss_pred             EEEEEeccHHHHHHHHHhCCeEEeHHH
Q 029840           98 KVTALRFTETARARIEKAGGECLTFDQ  124 (187)
Q Consensus        98 ~V~A~~fS~sA~eKIekAGGki~t~dq  124 (187)
                      +|.|..||++|+|+||+|||+|+++++
T Consensus       119 ~Ika~~~S~sA~ekIe~aGG~v~l~~~  145 (150)
T d1vqol1         119 TLIADDFSEGAREKVEGAGGSVELTDL  145 (150)
T ss_dssp             EEEESEECHHHHHHHHHTTCEEEECST
T ss_pred             EEEEEEcCHHHHHHHHHcCCEEEEeec
Confidence            999999999999999999999998764

>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=8.6e-15  Score=112.90  Aligned_cols=79  Identities=29%  Similarity=0.270  Sum_probs=64.0

Q ss_pred             CCChHHHHHHHHhhcC--CCCCCccchHHHhhhhccC-CCc------EE---EEEeeecCCceeeeecCeEEEEEeccHH
Q 029840           40 TDSNFDKVILKRLFMS--KVNKPPMSLSRLTKFMKGK-EDK------IA---VVVGTVTDDIRVYEVPALKVTALRFTET  107 (187)
Q Consensus        40 t~sp~~rrV~kRlf~~--r~~~~~VNLs~L~~~~~~~-~~k------~v---vv~gKVLg~G~l~~vpkl~V~A~~fS~s  107 (187)
                      -..|||+++|+++|.+  +..+.+|||++|+.+.... +-+      ++   ...+|||++|+|+.  +|+|.|..||++
T Consensus        50 GQ~Pl~rr~PK~Gf~~~~~~~~~~i~l~~l~~~~~~~i~~~~L~~~gli~~~~~~vKiLg~Gel~~--ki~i~~~~~S~s  127 (140)
T d2gycj1          50 GQMPLYRRLPKFGFTSRKAAITAEIRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTT--PVTVRGLRVTKG  127 (140)
T ss_dssp             SCSSSSSSSSSCCCCCCCCCCCCCBCCSSSSSSSSCSCCSTTSCTTTTCCCSSCCCBCCCSCCCCC--CCCCCCSCCCTT
T ss_pred             CcccceeeCceeeccccccceeeeEEeeeehhcccccccHHHHhhcCeeeccceeeEEeccCcccC--CEEEEEEEeCHH
Confidence            4679999999999997  5678899999998653321 111      11   13689999999998  999999999999


Q ss_pred             HHHHHHHhCCeEE
Q 029840          108 ARARIEKAGGECL  120 (187)
Q Consensus       108 A~eKIekAGGki~  120 (187)
                      |+++||+|||+|.
T Consensus       128 A~~~IE~aGG~Ve  140 (140)
T d2gycj1         128 ARAAIEAAGGKIE  140 (140)
T ss_dssp             TSSSSSSSCCCCC
T ss_pred             HHHHHHHcCCccC
Confidence            9999999999974