Citrus Sinensis ID: 029890

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------
MEDANSVETKDGAIAVAPAFPGHQEAVKDRDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKADGTGAAIAEQVFEKTKAKFQLY
ccccccccccccccccccccccccHHHcHHHHHHHHHHHHHHHHHHHccccccEEEEEEEccEEEEEEEccccccccccHHHHHHHHHHHHHHHccEEccccEEEEEcccHHHHHHHHHHcccccEEEcccccHHHHcccHHHHHHHHcccccccccEEEEcccHHHHHHHHHHHHHHHHHHHccc
cccccEEEEcccEEEEcHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEccEEEEEccccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEcccccHHHHHHHHccccEEEEcccccccccccccHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHccc
medansvetkdgaiavapafpghqeavkdrDHKFLTRAVEEAYkgvecgdggpfgavvVRNDEVVVSCHNmvlkstdptaHAEVTAIREACKKLNQielsdceiyascepcpmcfgaihLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKADGTGAAIAEQVFEKTKAKFQLY
medansvetkdgaiavapafpghqeavkdRDHKFLTRAVEEAykgvecgdggPFGAVVVRNDEVVVSCHNMvlkstdptahAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKADGTGAAIAEQVFEKTKAKFQLY
MEDANSVETKDGAIAVAPAFPGHQEAVKDRDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKaeaaiaigfddfiadaLRGTGFYQKAQLEIKKADGTGAAIAEQVFEKTKAKFQLY
******************************DHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKADGTGAAIAEQVF**********
********************************KFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKADGTGAAIAEQVFEKTKAKF*L*
*********KDGAIAVAPAFPGHQEAVKDRDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKADGTGAAIAEQVFEKTKAKFQLY
***ANSVETKDGAIAVAPAFPGHQEAVKDRDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKADGTGAAIAEQVFEKTKAKFQL*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEDANSVETKDGAIAVAPAFPGHQEAVKDRDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKADGTGAAIAEQVFEKTKAKFQLY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query186 2.2.26 [Sep-21-2011]
O34598156 Guanine deaminase OS=Baci yes no 0.655 0.782 0.511 3e-28
O67050151 tRNA-specific adenosine d yes no 0.516 0.635 0.453 2e-18
P21335161 tRNA-specific adenosine d no no 0.537 0.621 0.415 4e-16
Q8K9R4151 Uncharacterized protein B yes no 0.543 0.668 0.401 6e-16
P44931173 tRNA-specific adenosine d yes no 0.591 0.635 0.413 2e-15
P57343161 Uncharacterized protein B yes no 0.569 0.658 0.383 6e-15
Q9S7I01307 tRNA-specific adenosine d no no 0.532 0.075 0.41 1e-14
Q89AM8162 Uncharacterized protein b yes no 0.559 0.641 0.419 1e-13
Q68Y02148 Uncharacterized deaminase yes no 0.419 0.527 0.45 2e-13
Q4UJW9144 Uncharacterized deaminase yes no 0.419 0.541 0.462 2e-13
>sp|O34598|GUAD_BACSU Guanine deaminase OS=Bacillus subtilis (strain 168) GN=guaD PE=1 SV=1 Back     alignment and function desciption
 Score =  124 bits (312), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 66/129 (51%), Positives = 80/129 (62%), Gaps = 7/129 (5%)

Query: 34  FLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKK 93
           FL RAV  A +GV  G GGPFGAV+V++  ++    N V  S DPTAHAEVTAIR+ACK 
Sbjct: 6   FLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKV 65

Query: 94  LNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDD-FIADAL---- 148
           L   +L DC +Y SCEPCPMC GAI+ +R K + Y A+   A   GFDD FI   +    
Sbjct: 66  LGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKPA 125

Query: 149 --RGTGFYQ 155
             R   FYQ
Sbjct: 126 EERTIPFYQ 134
Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia.
Bacillus subtilis (strain 168) (taxid: 224308)
EC: 3EC: .EC: 5EC: .EC: 4EC: .EC: 3
>sp|O67050|TADA_AQUAE tRNA-specific adenosine deaminase OS=Aquifex aeolicus (strain VF5) GN=tadA PE=1 SV=1 Back     alignment and function description
>sp|P21335|TADA_BACSU tRNA-specific adenosine deaminase OS=Bacillus subtilis (strain 168) GN=tadA PE=1 SV=1 Back     alignment and function description
>sp|Q8K9R4|Y246_BUCAP Uncharacterized protein BUsg_246 OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=BUsg_246 PE=3 SV=1 Back     alignment and function description
>sp|P44931|TADA_HAEIN tRNA-specific adenosine deaminase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tadA PE=3 SV=1 Back     alignment and function description
>sp|P57343|Y255_BUCAI Uncharacterized protein BU255 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=BU255 PE=3 SV=1 Back     alignment and function description
>sp|Q9S7I0|TADA_ARATH tRNA-specific adenosine deaminase, chloroplastic OS=Arabidopsis thaliana GN=TADA PE=1 SV=1 Back     alignment and function description
>sp|Q89AM8|Y236_BUCBP Uncharacterized protein bbp_236 OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=bbp_236 PE=3 SV=1 Back     alignment and function description
>sp|Q68Y02|Y819_RICTY Uncharacterized deaminase RT0819 OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=RT0819 PE=3 SV=1 Back     alignment and function description
>sp|Q4UJW9|Y1319_RICFE Uncharacterized deaminase RF_1319 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_1319 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query186
388498334186 unknown [Lotus japonicus] 1.0 1.0 0.876 3e-92
255542370211 Guanine deaminase, putative [Ricinus com 0.967 0.853 0.905 6e-92
226504812186 uncharacterized protein LOC100272576 [Ze 1.0 1.0 0.860 2e-91
225451245186 PREDICTED: guanine deaminase [Vitis vini 1.0 1.0 0.881 3e-91
357479227186 tRNA-specific adenosine deaminase [Medic 1.0 1.0 0.870 9e-91
217071124186 unknown [Medicago truncatula] 1.0 1.0 0.865 3e-90
326492115186 predicted protein [Hordeum vulgare subsp 1.0 1.0 0.838 1e-89
356548017226 PREDICTED: tRNA-specific adenosine deami 1.0 0.823 0.844 8e-89
3204108186 putative cytidine deaminase [Cicer ariet 0.967 0.967 0.872 8e-88
76160949186 unknown [Solanum tuberosum] 1.0 1.0 0.897 8e-88
>gi|388498334|gb|AFK37233.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
 Score =  342 bits (878), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 163/186 (87%), Positives = 174/186 (93%)

Query: 1   MEDANSVETKDGAIAVAPAFPGHQEAVKDRDHKFLTRAVEEAYKGVECGDGGPFGAVVVR 60
           ME+ N VETKDG ++VA AF GHQEAV+DRDHKFL +AVEEAYKGV+CG GGPFGAV+VR
Sbjct: 1   MEEVNVVETKDGTVSVATAFAGHQEAVQDRDHKFLGKAVEEAYKGVDCGHGGPFGAVIVR 60

Query: 61  NDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHL 120
           NDEVVVSCHNMVL  TDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHL
Sbjct: 61  NDEVVVSCHNMVLNHTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHL 120

Query: 121 SRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKADGTGAAIAEQVFEKTK 180
           SRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIK+ADG GA IAE+VF+KTK
Sbjct: 121 SRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKRADGNGALIAEEVFQKTK 180

Query: 181 AKFQLY 186
            KFQ+Y
Sbjct: 181 EKFQMY 186

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255542370|ref|XP_002512248.1| Guanine deaminase, putative [Ricinus communis] gi|223548209|gb|EEF49700.1| Guanine deaminase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|226504812|ref|NP_001140513.1| uncharacterized protein LOC100272576 [Zea mays] gi|194699798|gb|ACF83983.1| unknown [Zea mays] gi|195610442|gb|ACG27051.1| cytidine/deoxycytidylate deaminase family protein [Zea mays] gi|414873752|tpg|DAA52309.1| TPA: putative cytidine/deoxycytidylate deaminase family protein [Zea mays] Back     alignment and taxonomy information
>gi|225451245|ref|XP_002276494.1| PREDICTED: guanine deaminase [Vitis vinifera] gi|298204906|emb|CBI34213.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357479227|ref|XP_003609899.1| tRNA-specific adenosine deaminase [Medicago truncatula] gi|355510954|gb|AES92096.1| tRNA-specific adenosine deaminase [Medicago truncatula] gi|388511761|gb|AFK43942.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|217071124|gb|ACJ83922.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|326492115|dbj|BAJ98282.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|356548017|ref|XP_003542400.1| PREDICTED: tRNA-specific adenosine deaminase-like [Glycine max] Back     alignment and taxonomy information
>gi|3204108|emb|CAA07230.1| putative cytidine deaminase [Cicer arietinum] Back     alignment and taxonomy information
>gi|76160949|gb|ABA40438.1| unknown [Solanum tuberosum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query186
TAIR|locus:2143774204 AT5G28050 [Arabidopsis thalian 0.983 0.897 0.748 4.1e-72
TAIR|locus:2096354113 AT3G05300 [Arabidopsis thalian 0.602 0.991 0.626 1.4e-32
WB|WBGene00020052153 R13A5.10 [Caenorhabditis elega 0.526 0.640 0.581 2.4e-28
WB|WBGene00012968168 Y48A6B.7 [Caenorhabditis elega 0.516 0.571 0.567 2e-24
TIGR_CMR|CHY_2682153 CHY_2682 "cytidine/deoxycytidy 0.532 0.647 0.514 5.5e-22
UNIPROTKB|Q83BW3159 CBU_1374 "Cytidine/deoxycytidy 0.543 0.635 0.425 9e-22
TIGR_CMR|CBU_1374159 CBU_1374 "cytidine/deoxycytidy 0.543 0.635 0.425 9e-22
UNIPROTKB|Q608J2164 MCA1498 "Zinc-binding domain p 0.548 0.621 0.407 2.7e-20
UNIPROTKB|Q81W19166 BAS0020 "Cytidine/deoxycytidyl 0.548 0.614 0.495 2.7e-20
TIGR_CMR|BA_0018166 BA_0018 "cytidine/deoxycytidyl 0.548 0.614 0.495 2.7e-20
TAIR|locus:2143774 AT5G28050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 137/183 (74%), Positives = 152/183 (83%)

Query:     4 ANSVETKDGAIAVAPAFPGHQEAVKDRDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDE 63
             ++ +E KDG I+VA AF GHQ+AV D DHKFLT+AVEEAYKGV+CGDGGPFGAV+V N+E
Sbjct:    22 SSELEAKDGTISVASAFSGHQQAVHDSDHKFLTQAVEEAYKGVDCGDGGPFGAVIVHNNE 81

Query:    64 VVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRI 123
             VV SCHNMVLK TDPTAHAEVTAIREACKKLN+IELS+CEIYASCEPCPMCFGAIHLSR+
Sbjct:    82 VVASCHNMVLKYTDPTAHAEVTAIREACKKLNKIELSECEIYASCEPCPMCFGAIHLSRL 141

Query:   124 KRLVYGAKXXXXXXXXXXXXXXXXLRGTGFYQKAQLEIKKADGTGAAIAEQVFEKTKAKF 183
             KRLVYGAK                LRGTG YQK+ LEIKKADG GAAIAEQVF+ TK KF
Sbjct:   142 KRLVYGAKAEAAIAIGFDDFIADALRGTGVYQKSSLEIKKADGNGAAIAEQVFQNTKEKF 201

Query:   184 QLY 186
             +LY
Sbjct:   202 RLY 204
GO:0003824 "catalytic activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016787 "hydrolase activity" evidence=IEA;ISS
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2096354 AT3G05300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
WB|WBGene00020052 R13A5.10 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00012968 Y48A6B.7 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2682 CHY_2682 "cytidine/deoxycytidylate deaminase family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|Q83BW3 CBU_1374 "Cytidine/deoxycytidylate deaminase family protein" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1374 CBU_1374 "cytidine/deoxycytidylate deaminase family protein" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|Q608J2 MCA1498 "Zinc-binding domain protein" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms
UNIPROTKB|Q81W19 BAS0020 "Cytidine/deoxycytidylate deaminase zinc-binding domain protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0018 BA_0018 "cytidine/deoxycytidylate deaminase zinc-binding domain protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O34598GUAD_BACSU3, ., 5, ., 4, ., 30.51160.65590.7820yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.40.766
3rd Layer3.5.4.26LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query186
cd01285109 cd01285, nucleoside_deaminase, Nucleoside deaminas 1e-44
COG0590152 COG0590, CumB, Cytosine/adenosine deaminases [Nucl 3e-41
pfam00383104 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycyti 1e-32
PRK10860172 PRK10860, PRK10860, tRNA-specific adenosine deamin 2e-19
COG0117146 COG0117, RibD, Pyrimidine deaminase [Coenzyme meta 2e-08
cd01284115 cd01284, Riboflavin_deaminase-reductase, Riboflavi 1e-07
TIGR00326 344 TIGR00326, eubact_ribD, riboflavin biosynthesis pr 9e-07
cd01286131 cd01286, deoxycytidylate_deaminase, Deoxycytidylat 3e-06
cd0078696 cd00786, cytidine_deaminase-like, Cytidine and deo 3e-06
PHA02588168 PHA02588, cd, deoxycytidylate deaminase; Provision 1e-05
PLN02807 380 PLN02807, PLN02807, diaminohydroxyphosphoribosylam 7e-05
COG2131164 COG2131, ComEB, Deoxycytidylate deaminase [Nucleot 3e-04
>gnl|CDD|238612 cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases Back     alignment and domain information 
 Score =  142 bits (361), Expect = 1e-44
 Identities = 50/109 (45%), Positives = 66/109 (60%), Gaps = 2/109 (1%)

Query: 35  LTRAVEEAYKGVECGDGGPFGAVVVRND-EVVVSCHNMVLKSTDPTAHAEVTAIREACKK 93
           +  A+E A K +      PFGAV+V +D +V+   HN V +  DPTAHAE+ AIR A ++
Sbjct: 1   MRLAIELARKALA-EGEVPFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARR 59

Query: 94  LNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDD 142
           L    LS C +Y + EPCPMC GA+  +RIKR+VYGA       IGF  
Sbjct: 60  LGSYLLSGCTLYTTLEPCPMCAGALLWARIKRVVYGASDPKLGGIGFLI 108

These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protein synthesis. Other members of the family are guanine deaminases which deaminate guanine to xanthine as part of the utilization of guanine as a nitrogen source. Length = 109
>gnl|CDD|223663 COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215887 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>gnl|CDD|182786 PRK10860, PRK10860, tRNA-specific adenosine deaminase; Provisional Back     alignment and domain information
>gnl|CDD|223195 COG0117, RibD, Pyrimidine deaminase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|238611 cd01284, Riboflavin_deaminase-reductase, Riboflavin-specific deaminase Back     alignment and domain information
>gnl|CDD|232920 TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD Back     alignment and domain information
>gnl|CDD|238613 cd01286, deoxycytidylate_deaminase, Deoxycytidylate deaminase domain Back     alignment and domain information
>gnl|CDD|238406 cd00786, cytidine_deaminase-like, Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>gnl|CDD|222894 PHA02588, cd, deoxycytidylate deaminase; Provisional Back     alignment and domain information
>gnl|CDD|215433 PLN02807, PLN02807, diaminohydroxyphosphoribosylaminopyrimidine deaminase Back     alignment and domain information
>gnl|CDD|225042 COG2131, ComEB, Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 186
PRK10860172 tRNA-specific adenosine deaminase; Provisional 100.0
COG0590152 CumB Cytosine/adenosine deaminases [Nucleotide tra 100.0
TIGR02571151 ComEB ComE operon protein 2. This protein is found 100.0
PHA02588168 cd deoxycytidylate deaminase; Provisional 100.0
cd01285109 nucleoside_deaminase Nucleoside deaminases include 100.0
COG0117146 RibD Pyrimidine deaminase [Coenzyme metabolism] 100.0
cd01286131 deoxycytidylate_deaminase Deoxycytidylate deaminas 99.97
PLN02807 380 diaminohydroxyphosphoribosylaminopyrimidine deamin 99.97
PF00383102 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deam 99.97
PRK10786 367 ribD bifunctional diaminohydroxyphosphoribosylamin 99.97
cd01284115 Riboflavin_deaminase-reductase Riboflavin-specific 99.97
KOG1018169 consensus Cytosine deaminase FCY1 and related enzy 99.96
TIGR00326 344 eubact_ribD riboflavin biosynthesis protein RibD. 99.96
cd0078696 cytidine_deaminase-like Cytidine and deoxycytidyla 99.95
COG2131164 ComEB Deoxycytidylate deaminase [Nucleotide transp 99.95
KOG3127230 consensus Deoxycytidylate deaminase [Nucleotide tr 99.85
cd01283112 cytidine_deaminase Cytidine deaminase zinc-binding 99.8
KOG2771344 consensus Subunit of tRNA-specific adenosine-34 de 99.72
TIGR01354127 cyt_deam_tetra cytidine deaminase, homotetrameric. 99.45
PF14439136 Bd3614-deam: Bd3614-like deaminase 99.14
PRK06848139 hypothetical protein; Validated 99.1
COG0295134 Cdd Cytidine deaminase [Nucleotide transport and m 99.05
PRK05578131 cytidine deaminase; Validated 98.99
PRK12411132 cytidine deaminase; Provisional 98.91
PRK08298136 cytidine deaminase; Validated 98.85
PRK14719 360 bifunctional RNAse/5-amino-6-(5-phosphoribosylamin 98.78
TIGR01355 283 cyt_deam_dimer cytidine deaminase, homodimeric. Th 98.76
KOG0833173 consensus Cytidine deaminase [Nucleotide transport 98.65
PLN02402 303 cytidine deaminase 98.63
PLN02182 339 cytidine deaminase 98.48
PRK09027295 cytidine deaminase; Provisional 98.48
PRK09027295 cytidine deaminase; Provisional 98.35
TIGR01355283 cyt_deam_dimer cytidine deaminase, homodimeric. Th 98.27
PLN02402303 cytidine deaminase 97.64
PF08211124 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deam 96.89
PF14437146 MafB19-deam: MafB19-like deaminase 96.24
PF14431125 YwqJ-deaminase: YwqJ-like deaminase 96.08
PF08210188 APOBEC_N: APOBEC-like N-terminal domain; InterPro: 95.7
PF14424133 Toxin-deaminase: The BURPS668_1122 family of deami 94.53
PF14440118 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase 87.13
PF14441142 OTT_1508_deam: OTT_1508-like deaminase 86.36
TIGR00355511 purH phosphoribosylaminoimidazolecarboxamide formy 83.04
PRK00881513 purH bifunctional phosphoribosylaminoimidazolecarb 82.91
>PRK10860 tRNA-specific adenosine deaminase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=9.4e-40  Score=259.58  Aligned_cols=151  Identities=30%  Similarity=0.470  Sum_probs=130.9

Q ss_pred             hHHHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEeeC
Q 029890           29 DRDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASC  108 (186)
Q Consensus        29 ~~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~  108 (186)
                      .+|++||++|+++|+++...++ .|||||||++|+||++|+|+.....|++.|||++||++|.++++.+.+.|+|||||+
T Consensus        11 ~~~~~~m~~A~~~A~~a~~~g~-~pvGAVIV~~g~IIa~g~N~~~~~~d~~~HAEi~Ai~~a~~~~~~~~l~g~tlY~Tl   89 (172)
T PRK10860         11 FSHEYWMRHALTLAKRAWDERE-VPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLLDATLYVTL   89 (172)
T ss_pred             ccHHHHHHHHHHHHHHhhccCC-CCEEEEEEeCCEEEEEeeCCCCCCCCCccCHHHHHHHHHHHhcCCCCcCCcEEEeeC
Confidence            3578899999999999998875 899999999999999999999888999999999999999999988899999999999


Q ss_pred             CCcHHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEEEeccchHHHHHHHHHHHhhccc
Q 029890          109 EPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKADGTGAAIAEQVFEKTKAKF  183 (186)
Q Consensus       109 ePC~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~l~~~~~~~~~~~f  183 (186)
                      |||+||+++|+|+||+||||+..+++.++.|   +...+++...+.++..|..+.+++++..+++.||++++..+
T Consensus        90 EPC~MC~~aii~agI~rVvyg~~d~~~g~~g---~~~~~l~~~~~~~~i~v~~gv~~~e~~~ll~~ff~~~~~~~  161 (172)
T PRK10860         90 EPCVMCAGAMVHSRIGRLVFGARDAKTGAAG---SLMDVLHHPGMNHRVEITEGVLADECAALLSDFFRMRRQEI  161 (172)
T ss_pred             CCcHHHHHHHHHhCCCEEEEeecCCCCCCCC---cHHHHhhcccCCCCCEEEeCccHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999887766   33444444444444444445788899999999999987544

>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR02571 ComEB ComE operon protein 2 Back     alignment and domain information
>PHA02588 cd deoxycytidylate deaminase; Provisional Back     alignment and domain information
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases Back     alignment and domain information
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism] Back     alignment and domain information
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain Back     alignment and domain information
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase Back     alignment and domain information
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3 Back     alignment and domain information
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase Back     alignment and domain information
>KOG1018 consensus Cytosine deaminase FCY1 and related enzymes [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD Back     alignment and domain information
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain Back     alignment and domain information
>KOG2771 consensus Subunit of tRNA-specific adenosine-34 deaminase [RNA processing and modification] Back     alignment and domain information
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric Back     alignment and domain information
>PF14439 Bd3614-deam: Bd3614-like deaminase Back     alignment and domain information
>PRK06848 hypothetical protein; Validated Back     alignment and domain information
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK05578 cytidine deaminase; Validated Back     alignment and domain information
>PRK12411 cytidine deaminase; Provisional Back     alignment and domain information
>PRK08298 cytidine deaminase; Validated Back     alignment and domain information
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric Back     alignment and domain information
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>PLN02402 cytidine deaminase Back     alignment and domain information
>PLN02182 cytidine deaminase Back     alignment and domain information
>PRK09027 cytidine deaminase; Provisional Back     alignment and domain information
>PRK09027 cytidine deaminase; Provisional Back     alignment and domain information
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric Back     alignment and domain information
>PLN02402 cytidine deaminase Back     alignment and domain information
>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase Back     alignment and domain information
>PF14437 MafB19-deam: MafB19-like deaminase Back     alignment and domain information
>PF14431 YwqJ-deaminase: YwqJ-like deaminase Back     alignment and domain information
>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme Back     alignment and domain information
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases Back     alignment and domain information
>PF14440 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase Back     alignment and domain information
>PF14441 OTT_1508_deam: OTT_1508-like deaminase Back     alignment and domain information
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase Back     alignment and domain information
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query186
1wkq_A164 Crystal Structure Of Bacillus Subtilis Guanine Deam 3e-27
1tiy_A164 X-Ray Structure Of Guanine Deaminase From Bacillus 3e-26
2b3j_A159 Crystal Structure Of Staphylococcus Aureus Trna Ade 2e-19
1wwr_A171 Crystal Structure Of Trna Adenosine Deaminase Tada 2e-19
2a8n_A144 Biochemical And Structural Studies Of A-To-I Editin 1e-14
3ocq_A183 Crystal Structure Of Trna-Specific Adenosine Deamin 6e-14
1z3a_A168 Crystal Structure Of Trna Adenosine Deaminase Tada 7e-14
2nx8_A179 The Crystal Structure Of The Trna-Specific Adenosin 4e-12
2g84_A197 Cytidine And Deoxycytidylate Deaminase Zinc-Binding 2e-09
2o3k_A161 Yeast Cytosine Deaminase D92e Triple Mutant Bound T 2e-08
1ysb_A161 Yeast Cytosine Deaminase Triple Mutant Length = 161 2e-08
1ysd_A161 Yeast Cytosine Deaminase Double Mutant Length = 161 3e-08
1p6o_A161 The Crystal Structure Of Yeast Cytosine Deaminase B 4e-08
1uaq_A158 The Crystal Structure Of Yeast Cytosine Deaminase L 4e-08
3dh1_A189 Crystal Structure Of Human Trna-Specific Adenosine- 4e-07
1ox7_A161 Crystal Structure Of Yeast Cytosine Deaminase Apo-E 1e-05
>pdb|1WKQ|A Chain A, Crystal Structure Of Bacillus Subtilis Guanine Deaminase. The First Domain-Swapped Structure In The Cytidine Deaminase Superfamily Length = 164 Back     alignment and structure 
Iteration: 1

 Score =  117 bits (293), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 68/98 (69%)
Query: 34  FLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKK 93
           FL RAV  A +GV  G GGPFGAV+V++  ++    N V  S DPTAHAEVTAIR+ACK 
Sbjct: 14  FLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKV 73
Query: 94  LNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAK 131
           L   +L DC +Y SCEPCPMC GAI+ +R K + Y A+
Sbjct: 74  LGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAE 111
>pdb|1TIY|A Chain A, X-Ray Structure Of Guanine Deaminase From Bacillus Subtilis Northeast Structural Genomics Consortium Target Sr160 Length = 164 Back     alignment and structure
>pdb|2B3J|A Chain A, Crystal Structure Of Staphylococcus Aureus Trna Adenosine Deaminase, Tada, In Complex With Rna Length = 159 Back     alignment and structure
>pdb|1WWR|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From Aquifex Aeolicus Length = 171 Back     alignment and structure
>pdb|2A8N|A Chain A, Biochemical And Structural Studies Of A-To-I Editing By Trna:a34 Deaminases At The Wobble Position Of Transfer Rna Length = 144 Back     alignment and structure
>pdb|3OCQ|A Chain A, Crystal Structure Of Trna-Specific Adenosine Deaminase From Salmonella Enterica Length = 183 Back     alignment and structure
>pdb|1Z3A|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From Escherichia Coli Length = 168 Back     alignment and structure
>pdb|2NX8|A Chain A, The Crystal Structure Of The Trna-Specific Adenosine Deaminase From Streptococcus Pyogenes Length = 179 Back     alignment and structure
>pdb|2G84|A Chain A, Cytidine And Deoxycytidylate Deaminase Zinc-Binding Region From Nitrosomonas Europaea. Length = 197 Back     alignment and structure
>pdb|2O3K|A Chain A, Yeast Cytosine Deaminase D92e Triple Mutant Bound To Transition State Analogue Hpy Length = 161 Back     alignment and structure
>pdb|1YSB|A Chain A, Yeast Cytosine Deaminase Triple Mutant Length = 161 Back     alignment and structure
>pdb|1YSD|A Chain A, Yeast Cytosine Deaminase Double Mutant Length = 161 Back     alignment and structure
>pdb|1P6O|A Chain A, The Crystal Structure Of Yeast Cytosine Deaminase Bound To 4(R)-Hydroxyl-3,4-Dihydropyrimidine At 1.14 Angstroms. Length = 161 Back     alignment and structure
>pdb|1UAQ|A Chain A, The Crystal Structure Of Yeast Cytosine Deaminase Length = 158 Back     alignment and structure
>pdb|3DH1|A Chain A, Crystal Structure Of Human Trna-Specific Adenosine-34 Deaminase Subunit Adat2 Length = 189 Back     alignment and structure
>pdb|1OX7|A Chain A, Crystal Structure Of Yeast Cytosine Deaminase Apo-Enzyme: Inorganic Zinc Bound Length = 161 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query186
1wkq_A164 Guanine deaminase; domain SWAP, the cytidine deami 3e-61
2g84_A197 Cytidine and deoxycytidylate deaminase zinc-bindi; 5e-46
1wwr_A171 TRNA adenosine deaminase TADA; homodimer, riken st 7e-38
2b3j_A159 TRNA adenosine deaminase; mixed alpha-beta, protei 9e-38
2nx8_A179 TRNA-specific adenosine deaminase; TAD, hydrolase; 1e-37
2a8n_A144 Cytidine and deoxycytidylate deaminase; RNA editin 3e-37
1z3a_A168 TRNA-specific adenosine deaminase; tRNA adenosine 4e-37
3dh1_A189 TRNA-specific adenosine deaminase 2; zinc-binding 7e-35
1p6o_A161 Cytosine deaminase; hydrolase, dimer, inhibitor bo 3e-32
2hvw_A184 Deoxycytidylate deaminase; 3-layer (alpha-beta)-sa 2e-08
2w4l_A178 DCMP deaminse, deoxycytidylate deaminase; pyrimidi 3e-08
1vq2_A193 DCMP deaminase, deoxycytidylate deaminase; hydrola 3e-07
2hxv_A 360 Diaminohydroxyphosphoribosylaminopyrimidine deami 4e-06
2b3z_A 373 Riboflavin biosynthesis protein RIBD; alpha/beta/a 9e-06
2g6v_A 402 Riboflavin biosynthesis protein RIBD; RIBD APO str 1e-04
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Length = 164 Back     alignment and structure
 Score =  186 bits (475), Expect = 3e-61
 Identities = 62/131 (47%), Positives = 77/131 (58%), Gaps = 1/131 (0%)

Query: 31  DHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREA 90
              FL RAV  A +GV  G GGPFGAV+V++  ++    N V  S DPTAHAEVTAIR+A
Sbjct: 11  HETFLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKA 70

Query: 91  CKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDD-FIADALR 149
           CK L   +L DC +Y SCEPCPMC GAI+ +R K + Y A+   A   GFDD FI   + 
Sbjct: 71  CKVLGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEID 130

Query: 150 GTGFYQKAQLE 160
                +     
Sbjct: 131 KPAEERTIPFY 141
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 Length = 197 Back     alignment and structure
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Length = 171 Back     alignment and structure
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Length = 159 Back     alignment and structure
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Length = 179 Back     alignment and structure
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 Length = 144 Back     alignment and structure
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A Length = 168 Back     alignment and structure
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} Length = 189 Back     alignment and structure
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Length = 161 Back     alignment and structure
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* Length = 184 Back     alignment and structure
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 178 Back     alignment and structure
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Length = 193 Back     alignment and structure
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 Length = 360 Back     alignment and structure
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* Length = 373 Back     alignment and structure
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* Length = 402 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query186
2nx8_A179 TRNA-specific adenosine deaminase; TAD, hydrolase; 100.0
1wkq_A164 Guanine deaminase; domain SWAP, the cytidine deami 100.0
1z3a_A168 TRNA-specific adenosine deaminase; tRNA adenosine 100.0
2b3j_A159 TRNA adenosine deaminase; mixed alpha-beta, protei 100.0
1wwr_A171 TRNA adenosine deaminase TADA; homodimer, riken st 100.0
2a8n_A144 Cytidine and deoxycytidylate deaminase; RNA editin 100.0
3dh1_A189 TRNA-specific adenosine deaminase 2; zinc-binding 100.0
2g84_A197 Cytidine and deoxycytidylate deaminase zinc-bindi; 100.0
1p6o_A161 Cytosine deaminase; hydrolase, dimer, inhibitor bo 100.0
2w4l_A178 DCMP deaminse, deoxycytidylate deaminase; pyrimidi 100.0
1vq2_A193 DCMP deaminase, deoxycytidylate deaminase; hydrola 100.0
2hvw_A184 Deoxycytidylate deaminase; 3-layer (alpha-beta)-sa 100.0
2b3z_A 373 Riboflavin biosynthesis protein RIBD; alpha/beta/a 99.97
2hxv_A 360 Diaminohydroxyphosphoribosylaminopyrimidine deami 99.97
2g6v_A 402 Riboflavin biosynthesis protein RIBD; RIBD APO str 99.97
3g8q_A 278 Predicted RNA-binding protein, contains thump doma 99.92
2nyt_A190 Probable C->U-editing enzyme apobec-2; cytidine de 99.86
1uwz_A136 Cytidine deaminase; CDD, tetramer, zinc binding, p 99.76
2fr5_A146 Cytidine deaminase; tetrahydrouridine, protein-inh 99.73
2z3g_A130 Blasticidin-S deaminase; hydrolase, cytidine deami 99.68
3b8f_A142 Putative blasticidin S deaminase; cytidine deamina 99.48
1r5t_A142 Cytidine deaminase; zinc dependent deaminase, RNA 99.44
2d30_A141 Cytidine deaminase; purines, pyrimidines, nucleosi 99.39
3r2n_A138 Cytidine deaminase; structural genomics, seattle s 99.38
3mpz_A150 Cytidine deaminase; ssgcid, structu genomics, seat 99.27
1ctt_A294 Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es 99.16
1ctt_A294 Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es 98.93
3dmo_A138 Cytidine deaminase; structural genomics, seattle s 98.91
3oj6_A158 Blasticidin-S deaminase; ssgcid, seattle structura 98.82
4eg2_A298 Cytidine deaminase; UMP synthesis, Zn binding, hyd 98.36
4eg2_A298 Cytidine deaminase; UMP synthesis, Zn binding, hyd 98.27
3v4k_A203 DNA DC->DU-editing enzyme apobec-3G; antiviral def 97.46
3vow_A190 Probable DNA DC->DU-editing enzyme apobec-3C; anti 97.24
4ehi_A534 Bifunctional purine biosynthesis protein PURH; str 80.85
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Back     alignment and structure
Probab=100.00  E-value=5.4e-40  Score=261.49  Aligned_cols=151  Identities=27%  Similarity=0.440  Sum_probs=132.0

Q ss_pred             CChHHHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEe
Q 029890           27 VKDRDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYA  106 (186)
Q Consensus        27 ~~~~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~  106 (186)
                      .+++|++||++|+++|+++...++ .|||||||++|+||++|+|+.....+++.|||++||++|.++++.+.+.|+||||
T Consensus        12 ~~~~d~~~M~~Al~~A~~a~~~g~-~pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~g~tlYv   90 (179)
T 2nx8_A           12 SLEEQTYFMQEALKESEKSLQKAE-IPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFV   90 (179)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTS-CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred             CcHHHHHHHHHHHHHHHhccccCC-CCEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCcccceEEEE
Confidence            447899999999999999998764 8999999999999999999999889999999999999999999899999999999


Q ss_pred             eCCCcHHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEEEeccchHHHHHHHHHHHhhc
Q 029890          107 SCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKADGTGAAIAEQVFEKTKA  181 (186)
Q Consensus       107 T~ePC~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~l~~~~~~~~~~  181 (186)
                      |+|||+||+++|+|+||+||||+..+|+.+..|   +.+++++...+++...|..+++++++..+++.||++.+.
T Consensus        91 TlEPC~mCa~ai~~agI~rVv~g~~d~~~g~~g---~~~~~l~~~~~~~~~~V~~gvl~~e~~~l~~~f~~~~r~  162 (179)
T 2nx8_A           91 TIEPCVMCSGAIGLARIPHVIYGASNQKFGGVD---SLYQILTDERLNHRVQVERGLLAADCANIMQTFFRQGRE  162 (179)
T ss_dssp             EECCBHHHHHHHHHTTCCEEEEEECCTTTBTTT---TSCCGGGCTTTTCCCEEEECTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHhCCCeEEEEEeCCCCcccc---cHHHHhhccccCCCcEEEcCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999998877   334444444444544454557899999999999988653
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Back     alignment and structure
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A Back     alignment and structure
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Back     alignment and structure
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Back     alignment and structure
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 Back     alignment and structure
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} Back     alignment and structure
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 Back     alignment and structure
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Back     alignment and structure
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} Back     alignment and structure
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Back     alignment and structure
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* Back     alignment and structure
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* Back     alignment and structure
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 Back     alignment and structure
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* Back     alignment and structure
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri} Back     alignment and structure
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A Back     alignment and structure
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A* Back     alignment and structure
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A* Back     alignment and structure
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A* Back     alignment and structure
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis} Back     alignment and structure
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1 Back     alignment and structure
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1 Back     alignment and structure
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0 Back     alignment and structure
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A Back     alignment and structure
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* Back     alignment and structure
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* Back     alignment and structure
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei} Back     alignment and structure
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis} Back     alignment and structure
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae} Back     alignment and structure
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae} Back     alignment and structure
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A* Back     alignment and structure
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A Back     alignment and structure
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE BTB; 2.28A {Campylobacter jejuni subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 186
d1wkqa_158 c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus sub 5e-30
d2g84a1189 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitr 3e-25
d1wwra1151 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA { 8e-23
d2a8na1130 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate de 2e-19
d1p6oa_156 c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (S 3e-16
d1z3aa1156 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA 7e-14
d2b3ja1151 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA { 5e-13
d2b3za2145 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein 1e-09
d1vq2a_193 c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriop 2e-09
d2hxva2147 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein 1e-07
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} Length = 158 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Guanine deaminase GuaD
species: Bacillus subtilis [TaxId: 1423]

 Score =  106 bits (264), Expect = 5e-30
 Identities = 60/116 (51%), Positives = 73/116 (62%)

Query: 31  DHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREA 90
              FL RAV  A +GV  G GGPFGAV+V++  ++    N V  S DPTAHAEVTAIR+A
Sbjct: 5   HETFLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKA 64

Query: 91  CKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIAD 146
           CK L   +L DC +Y SCEPCPMC GAI+ +R K + Y A+   A   GFDD    
Sbjct: 65  CKVLGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIY 120
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} Length = 189 Back     information, alignment and structure
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} Length = 151 Back     information, alignment and structure
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} Length = 130 Back     information, alignment and structure
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 156 Back     information, alignment and structure
>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} Length = 156 Back     information, alignment and structure
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]} Length = 151 Back     information, alignment and structure
>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Length = 145 Back     information, alignment and structure
>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} Length = 193 Back     information, alignment and structure
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Length = 147 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query186
d1wwra1151 tRNA adenosine deaminase TadA {Aquifex aeolicus [T 100.0
d1z3aa1156 tRNA adenosine deaminase TadA {Escherichia coli [T 100.0
d1wkqa_158 Guanine deaminase GuaD {Bacillus subtilis [TaxId: 100.0
d2b3ja1151 tRNA adenosine deaminase TadA {Staphylococcus aure 100.0
d2a8na1130 Cytidine and deoxycytidylate deaminase CodA {Agrob 100.0
d1p6oa_156 Cytosine deaminase {Baker's yeast (Saccharomyces c 100.0
d2g84a1189 Putative deaminase NE0047 {Nitrosomonas europaea [ 100.0
d2hxva2147 Riboflavin biosynthesis protein RibD {Thermotoga m 100.0
d2b3za2145 Riboflavin biosynthesis protein RibD {Bacillus sub 100.0
d1vq2a_193 Deoxycytidylate deaminase {Bacteriophage T4 [TaxId 99.97
d2fr5a1136 mono-domain cytidine deaminase {Mouse (Mus musculu 99.12
d2d30a1124 mono-domain cytidine deaminase {Bacillus anthracis 99.09
d1r5ta_141 mono-domain cytidine deaminase {Baker's yeast (Sac 99.08
d1uwza_130 mono-domain cytidine deaminase {Bacillus subtilis 98.97
d1alna2144 Two-domain cytidine deaminase {Escherichia coli [T 98.86
d2z3ga1123 Blasticidin-S deaminase {Aspergillus terreus [TaxI 98.78
d1alna1150 Two-domain cytidine deaminase {Escherichia coli [T 98.76
d1zcza2295 AICAR transformylase domain of bifunctional purine 80.09
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: tRNA adenosine deaminase TadA
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=5.6e-41  Score=258.68  Aligned_cols=147  Identities=33%  Similarity=0.556  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEeeCC
Q 029890           30 RDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCE  109 (186)
Q Consensus        30 ~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~e  109 (186)
                      .|++||++|+++|+++...++ .|||||||++|+||+.|+|+.....+++.|||++||++|+++++...+.|+|||+|+|
T Consensus         2 ~~e~fM~~Ai~~A~~a~~~~~-~pVGaVIV~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~a~~~~~~~~l~~~tlY~TlE   80 (151)
T d1wwra1           2 GKEYFLKVALREAKRAFEKGE-VPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVTLE   80 (151)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTS-CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEESSC
T ss_pred             CHHHHHHHHHHHHHHHhhcCC-CCEEEEEEECCeeeeeecccccccCcchhhHHHHHHHHHHHhhCccccCCcEeeeccc
Confidence            589999999999999998875 8999999999999999999998889999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEEEeccchHHHHHHHHHHHhhc
Q 029890          110 PCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKADGTGAAIAEQVFEKTKA  181 (186)
Q Consensus       110 PC~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~l~~~~~~~~~~  181 (186)
                      ||+||+++|+|+||+||||+..+|+.++.|   +.+.++....+++...|.... .+++.+|++.||++.+.
T Consensus        81 PC~mC~~ai~~~~I~rVvyg~~d~~~~~~~---~~~~~~~~~~~~~~~~v~~~~-~ee~~~Ll~~Ff~~~R~  148 (151)
T d1wwra1          81 PCIMCSYALVLSRIEKVIFSALDKKHGGVV---SVFNILDEPTLNHRVKWEYYP-LEEASELLSEFFKKLRN  148 (151)
T ss_dssp             CBHHHHHHHHHTTCSEEEESSCCTTTBTTT---TSCCGGGCTTCSSCCEEEECC-CHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHhcCCeEEEEeecCCCCccc---cHHHHHhhhhcCCCCEEEeec-HHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999887766   334444444444443443333 45789999999988753
>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2z3ga1 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Aspergillus terreus [TaxId: 33178]} Back     information, alignment and structure
>d1alna1 c.97.1.1 (A:1-150) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zcza2 c.97.1.4 (A:158-452) AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure