Citrus Sinensis ID: 029904

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
Protein Sequence
MAPVGPRSGDAIFANVERNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDDE
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccEEEcccccccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHcEEEEEEEEEEEcccccccEEEEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccEccccccccEEEEEEccccHHHHcccccccccccHHHHHHHHHHHHHHHHEEEEEEEEEEHccccccccEEEEEEEEEHHHcccccccc
Coil and Loop (DISEMBL)
mapvgprsgdAIFANVERNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLaksnvtrcvdFRETAEVIAKVGFKMFLGVTAtvsnwdadgtccsiilednplvdfvelpdtcqglyycNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQvpeeypykdde
Flexible Loop (DISEMBL)
mapvgprsgDAIFANVERNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKllkqvpeeypykdde
Low Complexity Region (SEG)
MAPVGPRSGDAIFANVERNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDDE
Disordered region (IsUnstruct)
**********AIFANVERNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQV**********
Disordered Region (DISOPRED)
******R*****FANVERNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPE********
Disordered Region (DISEMBL)
********GDAIFANVERNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDDE
Disordered Region (DISPRO)
*APVGPRSGDAIFANVERNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPVGPRSGDAIFANVERNAELFTLTYGATxxxxxxxxxxxxxxxxxxxxxGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDDE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	185	2.2.26 [Sep-21-2011]
Q5ZI57	180	Trafficking protein parti	yes	no	0.875	0.9	0.586	4e-53
Q5U1Z2	180	Trafficking protein parti	yes	no	0.875	0.9	0.580	4e-52
O55013	180	Trafficking protein parti	yes	no	0.875	0.9	0.580	4e-52
O43617	180	Trafficking protein parti	yes	no	0.875	0.9	0.574	8e-52
Q86K94	186	Trafficking protein parti	yes	no	0.972	0.967	0.565	6e-51
Q9P6P5	183	Transport protein particl	yes	no	0.956	0.967	0.516	1e-45
P36149	193	Trafficking protein parti	yes	no	0.951	0.911	0.461	6e-40
Q4KL14	181	Trafficking protein parti	no	no	0.864	0.883	0.496	1e-39
Q5T215	181	Trafficking protein parti	no	no	0.864	0.883	0.496	1e-38
Q61IU9	181	Probable trafficking prot	N/A	no	0.708	0.723	0.477	2e-28

>sp|Q5ZI57|TPPC3_CHICK Trafficking protein particle complex subunit 3 OS=Gallus gallus GN=TRAPPC3 PE=2 SV=1

 Score =  207 bits (527), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 95/162 (58%), Positives = 126/162 (77%)

Query: 19  NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
           N+ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRET
Sbjct: 15  NSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFLARSNVGRCHDFRET 74

Query: 79  AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
           A+VIAK+ FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV
Sbjct: 75  ADVIAKIAFKMYLGITPSITNWSPGGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGV 134

Query: 139 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 180
           +RGALEMV M  +V +++D L+GD   E+++K ++++ +  P
Sbjct: 135 LRGALEMVQMAVDVKFVQDTLKGDSVTEIRMKFIRRIEDNLP 176

May play a role in vesicular transport from endoplasmic reticulum to Golgi.
Gallus gallus (taxid: 9031)

>sp|Q5U1Z2|TPPC3_RAT Trafficking protein particle complex subunit 3 OS=Rattus norvegicus GN=Trappc3 PE=2 SV=1

 Score =  204 bits (518), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 94/162 (58%), Positives = 125/162 (77%)

Query: 19  NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
           ++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRET
Sbjct: 15  SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 74

Query: 79  AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
           A+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV
Sbjct: 75  ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 134

Query: 139 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 180
           +RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct: 135 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Rattus norvegicus (taxid: 10116)

>sp|O55013|TPPC3_MOUSE Trafficking protein particle complex subunit 3 OS=Mus musculus GN=Trappc3 PE=1 SV=1

 Score =  204 bits (518), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 94/162 (58%), Positives = 125/162 (77%)

Query: 19  NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
           ++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRET
Sbjct: 15  SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 74

Query: 79  AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
           A+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV
Sbjct: 75  ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 134

Query: 139 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 180
           +RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct: 135 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Mus musculus (taxid: 10090)

>sp|O43617|TPPC3_HUMAN Trafficking protein particle complex subunit 3 OS=Homo sapiens GN=TRAPPC3 PE=1 SV=1

 Score =  202 bits (515), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 93/162 (57%), Positives = 125/162 (77%)

Query: 19  NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
           ++ELFTLTYGA V QL  D E  E+VNKQLD+MG+NIG+RLI++FLA+SNV RC DFRET
Sbjct: 15  SSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRET 74

Query: 79  AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
           A+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV
Sbjct: 75  ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGV 134

Query: 139 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 180
           +RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct: 135 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Homo sapiens (taxid: 9606)

>sp|Q86K94|TPPC3_DICDI Trafficking protein particle complex subunit 3 OS=Dictyostelium discoideum GN=trappc3 PE=3 SV=2

 Score =  199 bits (507), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 103/182 (56%), Positives = 133/182 (73%), Gaps = 2/182 (1%)

Query: 1   MAPVGPRSGDAIFANVER-NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 59
           M+    + G+ +F  VE+ N+ELFTLTYGA V QL+ D E++E+VN +L+QMGYNIGIRL
Sbjct: 1   MSKKYDKLGNDVFNKVEKINSELFTLTYGALVTQLIKDYEDIEQVNIKLEQMGYNIGIRL 60

Query: 60  IDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDF 119
           I+EFLAKS + RC DF ETAEVIAKVGFKMFLGV A V +WDA+     + +EDNPL+DF
Sbjct: 61  IEEFLAKSGIGRCSDFIETAEVIAKVGFKMFLGVNAHVGDWDANRKEFHLTIEDNPLIDF 120

Query: 120 VELPDTCQG-LYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEE 178
           VELPD  +  LYY NIL GV+RGALEMV MK + T+++  L  D   E++V L + + + 
Sbjct: 121 VELPDQYKHKLYYSNILCGVMRGALEMVQMKVKCTFVKCTLSDDSTSEIKVVLEEVLSDM 180

Query: 179 YP 180
            P
Sbjct: 181 IP 182

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9P6P5|BET3_SCHPO Transport protein particle subunit bet3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bet3 PE=3 SV=1

 Score =  182 bits (462), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 93/180 (51%), Positives = 128/180 (71%), Gaps = 3/180 (1%)

Query: 7   RSGDAIFANVER-NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLA 65
           + G+ ++  V++ NAELF LTYG+ V QL  D+   E+VN++LD+MGYNIGIRLI++FLA
Sbjct: 5   KIGEDVYKKVDKVNAELFVLTYGSIVAQLCKDMN-YEKVNEELDKMGYNIGIRLIEDFLA 63

Query: 66  KSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELP-D 124
           K+   RC DFRET E +AKVGFK+FL  +  +S+   DG    + L+DNPL +FVELP D
Sbjct: 64  KTEWPRCADFRETGETVAKVGFKVFLNFSPIISSVSDDGNTFVLTLDDNPLAEFVELPAD 123

Query: 125 TCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDD 184
             Q L+Y NIL GVIRGALEM+ M  +  ++RD+LRGD+  E++V L + + EE P  D+
Sbjct: 124 ARQKLWYSNILCGVIRGALEMLQMDVDAVFLRDILRGDEHTEIRVHLKRILKEEIPPGDE 183

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P36149|BET3_YEAST Trafficking protein particle complex subunit BET3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BET3 PE=1 SV=1

 Score =  163 bits (413), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 83/180 (46%), Positives = 122/180 (67%), Gaps = 4/180 (2%)

Query: 9   GDAIFANVER--NAELFTLTYGATVRQLLTDLE-EVEEVNKQLDQMGYNIGIRLIDEFLA 65
           G+ I+ N     N ELFTLTYG+ V QL  D E +  +VN  L  MGYNIG RLI++FLA
Sbjct: 14  GEEIWKNKTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLA 73

Query: 66  KSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELP-D 124
           ++ + RC +  +T+EV++K  FK+FL +T  ++NW  +    S+IL++NPL DFVELP D
Sbjct: 74  RTALPRCENLVKTSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVELPMD 133

Query: 125 TCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDD 184
             + L+Y NIL GV++G+LEMV +  +V ++ D+LRGD   E++VKL + + +E P  +D
Sbjct: 134 AMKSLWYSNILCGVLKGSLEMVQLDCDVWFVSDILRGDSQTEIKVKLNRILKDEIPIGED 193

Component of the TRAPP I, TRAPP II and TRAPP III complexes which act as guanine nucleotide exchange factors (GEF) for YPT1. TRAPP I plays a key role in the late stages of endoplasmic reticulum to Golgi traffic. TRAPP II plays a role in intra-Golgi transport. TRAPP III plays a role in autophagosome formation. Required for sporulation. Has a role late in meiosis following DNA replication.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q4KL14|TPC3L_MOUSE Trafficking protein particle complex subunit 3-like protein OS=Mus musculus GN=Bet3l PE=2 SV=1

 Score =  162 bits (410), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 80/161 (49%), Positives = 111/161 (68%), Gaps = 1/161 (0%)

Query: 19  NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
           N +LF LTYGA V QL  D E+ E+VNK LD+MGYNIG RL+++FLA+S V RC  + E 
Sbjct: 15  NKDLFVLTYGALVAQLCKDYEKDEDVNKYLDKMGYNIGTRLVEDFLARSCVRRCHSYSEI 74

Query: 79  AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFV-ELPDTCQGLYYCNILSG 137
             +IA+V FKM+LG+T +V+  ++     S+IL  NPL +FV ELP     L YCN+L G
Sbjct: 75  INIIAQVAFKMYLGITPSVTCHNSSRNEFSLILHKNPLAEFVEELPAGRSALCYCNLLCG 134

Query: 138 VIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEE 178
           +IRGALEMV +   VT+++D L+GD   E+ +  LK++ E+
Sbjct: 135 IIRGALEMVHLAANVTFLQDRLKGDSVTEIGITFLKKLDEK 175

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Mus musculus (taxid: 10090)

>sp|Q5T215|TPC3L_HUMAN Trafficking protein particle complex subunit 3-like protein OS=Homo sapiens GN=BET3L PE=1 SV=1

 Score =  159 bits (402), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 80/161 (49%), Positives = 113/161 (70%), Gaps = 1/161 (0%)

Query: 19  NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
           N +LF LTYGA V QL  D E+ E+VN+ LD+MGY IG RL+++FLA+S V RC  + E 
Sbjct: 15  NKDLFVLTYGALVAQLCKDYEKDEDVNQYLDKMGYGIGTRLVEDFLARSCVGRCHSYSEI 74

Query: 79  AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFV-ELPDTCQGLYYCNILSG 137
            ++IA+V FKM+LG+T +V+  ++     S+ILE NPLV+FV ELP     L YCN+L G
Sbjct: 75  IDIIAQVAFKMYLGITPSVTCNNSSKNEFSLILEKNPLVEFVEELPAGRSSLCYCNLLCG 134

Query: 138 VIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEE 178
           +IRGALEMV +  +VT+++D L+GD   E+ +  LK+  E+
Sbjct: 135 IIRGALEMVHLAADVTFLQDRLKGDSVTEIGITFLKKRDEK 175

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Homo sapiens (taxid: 9606)

>sp|Q61IU9|TPPC3_CAEBR Probable trafficking protein particle complex subunit 3 OS=Caenorhabditis briggsae GN=CBG10062 PE=3 SV=1

 Score =  125 bits (313), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/134 (47%), Positives = 89/134 (66%), Gaps = 3/134 (2%)

Query: 19  NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAK-SNVTRCVDFRE 77
           +AELF LTYGA V ++L D E+ ++V  QLD+MG+N+G RL D+FLAK +NV RCVD R+
Sbjct: 16  SAELFCLTYGAMVTEMLKDYEDPKDVTVQLDKMGFNMGTRLADDFLAKNANVPRCVDTRQ 75

Query: 78  TAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDT--CQGLYYCNIL 135
            A+V+ +     +LGV+AT S+W +      I LE NPL + V++P      GL Y  ++
Sbjct: 76  IADVLCRNAIPCYLGVSATASSWSSGDREFIITLESNPLTELVQVPPNLVSAGLSYSQMI 135

Query: 136 SGVIRGALEMVSMK 149
           +G IRGALE V  K
Sbjct: 136 AGAIRGALEAVHFK 149

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
255563689	186	Trafficking protein particle complex sub	1.0	0.994	0.946	3e-98
225461038	186	PREDICTED: trafficking protein particle	1.0	0.994	0.924	6e-97
312283369	186	unnamed protein product [Thellungiella h	1.0	0.994	0.924	2e-96
388507128	186	unknown [Lotus japonicus]	1.0	0.994	0.913	3e-96
224126327	186	predicted protein [Populus trichocarpa]	1.0	0.994	0.908	7e-96
297792935	186	hypothetical protein ARALYDRAFT_357730 [	1.0	0.994	0.919	9e-96
15239731	186	Transport protein particle (TRAPP) compo	1.0	0.994	0.908	3e-95
351723957	186	uncharacterized protein LOC100499843 [Gl	1.0	0.994	0.897	2e-93
351725447	186	uncharacterized protein LOC100306217 [Gl	1.0	0.994	0.897	3e-93
357474795	186	Trafficking protein particle complex sub	1.0	0.994	0.892	9e-93

>gi|255563689|ref|XP_002522846.1| Trafficking protein particle complex subunit, putative [Ricinus communis] gi|223537930|gb|EEF39544.1| Trafficking protein particle complex subunit, putative [Ricinus communis]

 Score =  362 bits (930), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 176/186 (94%), Positives = 182/186 (97%), Gaps = 1/186 (0%)

Query: 1   MAPVGPRSGDAIFANVER-NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 59
           MAPVGPRSGDAIFA+VER NAELFTLTYGA VRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MAPVGPRSGDAIFASVERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 60  IDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDF 119
           +DEFLAKSNV RCVDFRETAEVIAKVGFKMFLGV+A+V+NWDADGTCCSIILEDNPLVDF
Sbjct: 61  VDEFLAKSNVNRCVDFRETAEVIAKVGFKMFLGVSASVTNWDADGTCCSIILEDNPLVDF 120

Query: 120 VELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEY 179
           VELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTW RD+LRGDDAYELQVKLLKQVPEEY
Sbjct: 121 VELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWARDMLRGDDAYELQVKLLKQVPEEY 180

Query: 180 PYKDDE 185
           PYKDDE
Sbjct: 181 PYKDDE 186

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461038|ref|XP_002281399.1| PREDICTED: trafficking protein particle complex subunit 3 [Vitis vinifera] gi|147765421|emb|CAN64900.1| hypothetical protein VITISV_041653 [Vitis vinifera] gi|297735985|emb|CBI23959.3| unnamed protein product [Vitis vinifera]

 Score =  358 bits (918), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 172/186 (92%), Positives = 180/186 (96%), Gaps = 1/186 (0%)

Query: 1   MAPVGPRSGDAIFANVER-NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 59
           MAP  PRSGDAIFANVER NAELFTLTYGA VRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MAPAAPRSGDAIFANVERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 60  IDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDF 119
           IDEFLAKSNV+RCVDF+ETAE IAKVGFKMFLGVTA+V+NWDADGT CS++LEDNPLVDF
Sbjct: 61  IDEFLAKSNVSRCVDFKETAEAIAKVGFKMFLGVTASVTNWDADGTSCSLVLEDNPLVDF 120

Query: 120 VELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEY 179
           VELPDTCQGLYYCNILSGV+RGALEMVSMKTEVTWIRD+LRGDDAYELQVKLLKQVPEEY
Sbjct: 121 VELPDTCQGLYYCNILSGVVRGALEMVSMKTEVTWIRDMLRGDDAYELQVKLLKQVPEEY 180

Query: 180 PYKDDE 185
           PYKDDE
Sbjct: 181 PYKDDE 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312283369|dbj|BAJ34550.1| unnamed protein product [Thellungiella halophila]

 Score =  356 bits (913), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 172/186 (92%), Positives = 181/186 (97%), Gaps = 1/186 (0%)

Query: 1   MAPVGPRSGDAIFANVER-NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 59
           MAPVGPRSGDAIF++++R NAELFTLTYGA VRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MAPVGPRSGDAIFSSIDRVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 60  IDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDF 119
           IDEFLAKS V+RCVDFRETAE+IAKVGFKMFLGVTA+VS+WDADGTCCSIILEDNPLVDF
Sbjct: 61  IDEFLAKSGVSRCVDFRETAEMIAKVGFKMFLGVTASVSSWDADGTCCSIILEDNPLVDF 120

Query: 120 VELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEY 179
           VELPDTCQGLYYCN+LSGVIRGALEMVSMKTEVTW RDVLRGDDAYELQVKLLKQV EEY
Sbjct: 121 VELPDTCQGLYYCNVLSGVIRGALEMVSMKTEVTWTRDVLRGDDAYELQVKLLKQVAEEY 180

Query: 180 PYKDDE 185
           PYKDDE
Sbjct: 181 PYKDDE 186

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507128|gb|AFK41630.1| unknown [Lotus japonicus]

 Score =  356 bits (913), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 170/186 (91%), Positives = 181/186 (97%), Gaps = 1/186 (0%)

Query: 1   MAPVGPRSGDAIFANVER-NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 59
           MAPV PRSGDAIFAN+ER NAELFTLTYGA VRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MAPVAPRSGDAIFANIERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 60  IDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDF 119
           +DEFLAKSNV+RCVDFRET +VIAKVGFKMFLGVTA+V+NWDA+GTCCSI+LEDNPLVDF
Sbjct: 61  VDEFLAKSNVSRCVDFRETTDVIAKVGFKMFLGVTASVTNWDAEGTCCSIVLEDNPLVDF 120

Query: 120 VELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEY 179
           VELPDTCQGLYYCNILSGVIRGAL+MVSMKTEVTW+RDVLRGDD +ELQVKLLKQVPEEY
Sbjct: 121 VELPDTCQGLYYCNILSGVIRGALDMVSMKTEVTWLRDVLRGDDVFELQVKLLKQVPEEY 180

Query: 180 PYKDDE 185
           PYKDDE
Sbjct: 181 PYKDDE 186

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126327|ref|XP_002319811.1| predicted protein [Populus trichocarpa] gi|118484767|gb|ABK94252.1| unknown [Populus trichocarpa] gi|222858187|gb|EEE95734.1| predicted protein [Populus trichocarpa]

 Score =  354 bits (909), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 169/186 (90%), Positives = 181/186 (97%), Gaps = 1/186 (0%)

Query: 1   MAPVGPRSGDAIFANVER-NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 59
           MAPV PRSGDAIFA+VE  NAELFTLTYGA VRQLLTDLEEVEEVNKQLDQMGYNIG+RL
Sbjct: 1   MAPVAPRSGDAIFASVEHVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGVRL 60

Query: 60  IDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDF 119
           IDEFLAKSNV+RCVDF+ETA+VIAKVGFKMFLGV A+V+NWDADGTCCSI+LEDNPLVDF
Sbjct: 61  IDEFLAKSNVSRCVDFKETADVIAKVGFKMFLGVGASVTNWDADGTCCSIVLEDNPLVDF 120

Query: 120 VELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEY 179
           VELPDTCQGLYYCNILSGV+RGALEMVSMKTEVTW+RD+LRGDDA+ELQVKLLKQVPEEY
Sbjct: 121 VELPDTCQGLYYCNILSGVVRGALEMVSMKTEVTWVRDMLRGDDAFELQVKLLKQVPEEY 180

Query: 180 PYKDDE 185
           PYKDDE
Sbjct: 181 PYKDDE 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792935|ref|XP_002864352.1| hypothetical protein ARALYDRAFT_357730 [Arabidopsis lyrata subsp. lyrata] gi|297310187|gb|EFH40611.1| hypothetical protein ARALYDRAFT_357730 [Arabidopsis lyrata subsp. lyrata]

 Score =  354 bits (908), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 171/186 (91%), Positives = 181/186 (97%), Gaps = 1/186 (0%)

Query: 1   MAPVGPRSGDAIFANVER-NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 59
           MAPVGPRSGDAIF++++R NAELFTLTYGA VRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MAPVGPRSGDAIFSSIDRVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 60  IDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDF 119
           IDEFLAKS V+RCVDF+ETAE+IAKVGFKMFLGVTA+V++WDADGTCCSIILEDNPLVDF
Sbjct: 61  IDEFLAKSGVSRCVDFKETAEMIAKVGFKMFLGVTASVTSWDADGTCCSIILEDNPLVDF 120

Query: 120 VELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEY 179
           VELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTW RDVLRGDDAYELQVKLLKQV EEY
Sbjct: 121 VELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWTRDVLRGDDAYELQVKLLKQVAEEY 180

Query: 180 PYKDDE 185
           PYKDDE
Sbjct: 181 PYKDDE 186

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239731|ref|NP_200286.1| Transport protein particle (TRAPP) component [Arabidopsis thaliana] gi|9758255|dbj|BAB08754.1| transport protein particle component Bet3p-like protein [Arabidopsis thaliana] gi|21537181|gb|AAM61522.1| transport protein particle component Bet3p-like protein [Arabidopsis thaliana] gi|22022528|gb|AAM83222.1| AT5g54750/MBG8_1 [Arabidopsis thaliana] gi|23308241|gb|AAN18090.1| At5g54750/MBG8_1 [Arabidopsis thaliana] gi|332009151|gb|AED96534.1| Transport protein particle (TRAPP) component [Arabidopsis thaliana]

 Score =  352 bits (904), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 169/186 (90%), Positives = 181/186 (97%), Gaps = 1/186 (0%)

Query: 1   MAPVGPRSGDAIFANVER-NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 59
           MAPVGPRSGDAIF++++R NAELFTLTYGA VRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1   MAPVGPRSGDAIFSSIDRVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 60  IDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDF 119
           IDEFLAKS V+RCVDF+ETAE+IAKVGFKMFLGVTA+V++WD+DGTCCSIILEDNPLVDF
Sbjct: 61  IDEFLAKSGVSRCVDFKETAEMIAKVGFKMFLGVTASVTSWDSDGTCCSIILEDNPLVDF 120

Query: 120 VELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEY 179
           VELPDTCQGLYYCN+LSGVIRGALEMVSMKTEVTW RDVLRGDDAYELQVKLLKQV EEY
Sbjct: 121 VELPDTCQGLYYCNVLSGVIRGALEMVSMKTEVTWTRDVLRGDDAYELQVKLLKQVAEEY 180

Query: 180 PYKDDE 185
           PYKDDE
Sbjct: 181 PYKDDE 186

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723957|ref|NP_001236785.1| uncharacterized protein LOC100499843 [Glycine max] gi|255627065|gb|ACU13877.1| unknown [Glycine max]

 Score =  347 bits (889), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 167/186 (89%), Positives = 176/186 (94%), Gaps = 1/186 (0%)

Query: 1   MAPVGPRSGDAIFANVER-NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 59
           M PV PRSGDAIFANVER NAELFTLTYGA VRQLLTDLEEVEEVN+QLDQMGYNIGIRL
Sbjct: 1   MPPVAPRSGDAIFANVERVNAELFTLTYGAIVRQLLTDLEEVEEVNEQLDQMGYNIGIRL 60

Query: 60  IDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDF 119
           IDEFLAKSNV+RC DFRET +VIAKVGFKMFLGV A+V+NWDADGTCCSI+LEDNPLVDF
Sbjct: 61  IDEFLAKSNVSRCNDFRETTDVIAKVGFKMFLGVIASVTNWDADGTCCSIVLEDNPLVDF 120

Query: 120 VELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEY 179
           VELPD CQGLYYCNILSGVIRGAL+MVSMKTEVTW+RDVLRGDD +ELQVKLLK VPEEY
Sbjct: 121 VELPDNCQGLYYCNILSGVIRGALDMVSMKTEVTWLRDVLRGDDVFELQVKLLKHVPEEY 180

Query: 180 PYKDDE 185
           PYKDDE
Sbjct: 181 PYKDDE 186

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725447|ref|NP_001235557.1| uncharacterized protein LOC100306217 [Glycine max] gi|255627887|gb|ACU14288.1| unknown [Glycine max]

 Score =  346 bits (887), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 167/186 (89%), Positives = 175/186 (94%), Gaps = 1/186 (0%)

Query: 1   MAPVGPRSGDAIFANVER-NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 59
           M PV PRSGDAIFANVER NAELFTLTYGA VRQLLTDLEE E VNKQLDQMGYNIGIRL
Sbjct: 1   MPPVAPRSGDAIFANVERVNAELFTLTYGAIVRQLLTDLEEAEVVNKQLDQMGYNIGIRL 60

Query: 60  IDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDF 119
           IDEFLAKSNV+RC DFRET +VIAKVGFKMFLGVTA+V+NWDADGTCCSI+LEDNPLVDF
Sbjct: 61  IDEFLAKSNVSRCNDFRETTDVIAKVGFKMFLGVTASVTNWDADGTCCSIVLEDNPLVDF 120

Query: 120 VELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEY 179
           VELPD CQGLYYCNILSGVIRGAL+MVSMKTEVTW+RDVLRGDD +ELQVKLLK VPEEY
Sbjct: 121 VELPDNCQGLYYCNILSGVIRGALDMVSMKTEVTWLRDVLRGDDVFELQVKLLKHVPEEY 180

Query: 180 PYKDDE 185
           PYKDDE
Sbjct: 181 PYKDDE 186

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474795|ref|XP_003607683.1| Trafficking protein particle complex subunit [Medicago truncatula] gi|217075312|gb|ACJ86016.1| unknown [Medicago truncatula] gi|355508738|gb|AES89880.1| Trafficking protein particle complex subunit [Medicago truncatula] gi|388499948|gb|AFK38040.1| unknown [Medicago truncatula]

 Score =  344 bits (882), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 166/186 (89%), Positives = 177/186 (95%), Gaps = 1/186 (0%)

Query: 1   MAPVGPRSGDAIFANVER-NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 59
           MAPV PR+GDAIFAN+ER NAELFTLTYGA VRQLLTDLEEV+EVNKQLDQMGYNIGIRL
Sbjct: 1   MAPVAPRTGDAIFANIERVNAELFTLTYGAIVRQLLTDLEEVDEVNKQLDQMGYNIGIRL 60

Query: 60  IDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDF 119
           IDEFLAKSNV+RCVDFRETA+VIAKVGFKMFLGVTA+V+NWDA+GT CSIILEDNPLVDF
Sbjct: 61  IDEFLAKSNVSRCVDFRETADVIAKVGFKMFLGVTASVTNWDAEGTTCSIILEDNPLVDF 120

Query: 120 VELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEY 179
           VELPD  QGLYYCNILSGVIRGAL+MVSMK EVTW+RD LRGDD +ELQVKLLKQVPEEY
Sbjct: 121 VELPDNYQGLYYCNILSGVIRGALDMVSMKAEVTWLRDALRGDDVFELQVKLLKQVPEEY 180

Query: 180 PYKDDE 185
           PYKDDE
Sbjct: 181 PYKDDE 186

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
UNIPROTKB|Q5ZI57	180	TRAPPC3 "Trafficking protein p	0.875	0.9	0.586	2.5e-49
UNIPROTKB|E2QWX5	180	TRAPPC3 "Uncharacterized prote	0.875	0.9	0.580	2.9e-48
MGI|MGI:1351486	180	Trappc3 "trafficking protein p	0.875	0.9	0.580	2.9e-48
RGD|1309135	180	Trappc3 "trafficking protein p	0.875	0.9	0.580	2.9e-48
UNIPROTKB|O43617	180	TRAPPC3 "Trafficking protein p	0.875	0.9	0.574	7.7e-48
DICTYBASE|DDB_G0277135	186	trappc3 "trafficking protein p	0.929	0.924	0.586	1.6e-47
GENEDB_PFALCIPARUM|PFD0895c	187	PFD0895c "Bet3 transport prote	0.962	0.951	0.538	8.8e-47
UNIPROTKB|Q8I1Q2	187	PFD0895c "Bet3 transport prote	0.962	0.951	0.538	8.8e-47
ASPGD|ASPL0000037253	188	AN9086 [Emericella nidulans (t	0.897	0.882	0.547	7.9e-46
POMBASE|SPAC644.18c	183	bet3 "TRAPP complex subunit Be	0.945	0.956	0.522	1e-43

UNIPROTKB|Q5ZI57 TRAPPC3 "Trafficking protein particle complex subunit 3" [Gallus gallus (taxid:9031)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 95/162 (58%), Positives = 126/162 (77%)

Query:    19 NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
             N+ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRET
Sbjct:    15 NSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFLARSNVGRCHDFRET 74

Query:    79 AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
             A+VIAK+ FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV
Sbjct:    75 ADVIAKIAFKMYLGITPSITNWSPGGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGV 134

Query:   139 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 180
             +RGALEMV M  +V +++D L+GD   E+++K ++++ +  P
Sbjct:   135 LRGALEMVQMAVDVKFVQDTLKGDSVTEIRMKFIRRIEDNLP 176

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

UNIPROTKB|E2QWX5 TRAPPC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 94/162 (58%), Positives = 125/162 (77%)

Query:    19 NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
             ++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRET
Sbjct:    15 SSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFLARSNVGRCHDFRET 74

Query:    79 AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
             A+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV
Sbjct:    75 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGV 134

Query:   139 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 180
             +RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct:   135 LRGALEMVQMAVEARFVQDTLKGDGVTEIRMRFIRRIEDNLP 176

GO:0030008 "TRAPP complex" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

MGI|MGI:1351486 Trappc3 "trafficking protein particle complex 3" [Mus musculus (taxid:10090)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 94/162 (58%), Positives = 125/162 (77%)

Query:    19 NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
             ++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRET
Sbjct:    15 SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 74

Query:    79 AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
             A+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV
Sbjct:    75 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 134

Query:   139 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 180
             +RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct:   135 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IDA

RGD|1309135 Trappc3 "trafficking protein particle complex 3" [Rattus norvegicus (taxid:10116)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 94/162 (58%), Positives = 125/162 (77%)

Query:    19 NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
             ++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRET
Sbjct:    15 SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 74

Query:    79 AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
             A+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV
Sbjct:    75 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 134

Query:   139 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 180
             +RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct:   135 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176

GO:0000139 "Golgi membrane" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA;ISO

GO:0030008 "TRAPP complex" evidence=IEA;ISO

UNIPROTKB|O43617 TRAPPC3 "Trafficking protein particle complex subunit 3" [Homo sapiens (taxid:9606)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 93/162 (57%), Positives = 125/162 (77%)

Query:    19 NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
             ++ELFTLTYGA V QL  D E  E+VNKQLD+MG+NIG+RLI++FLA+SNV RC DFRET
Sbjct:    15 SSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRET 74

Query:    79 AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
             A+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV
Sbjct:    75 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGV 134

Query:   139 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 180
             +RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct:   135 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

DICTYBASE|DDB_G0277135 trappc3 "trafficking protein particle complex subunit 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 102/174 (58%), Positives = 130/174 (74%)

Query:     9 GDAIFANVER-NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKS 67
             G+ +F  VE+ N+ELFTLTYGA V QL+ D E++E+VN +L+QMGYNIGIRLI+EFLAKS
Sbjct:     9 GNDVFNKVEKINSELFTLTYGALVTQLIKDYEDIEQVNIKLEQMGYNIGIRLIEEFLAKS 68

Query:    68 NVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQ 127
              + RC DF ETAEVIAKVGFKMFLGV A V +WDA+     + +EDNPL+DFVELPD  +
Sbjct:    69 GIGRCSDFIETAEVIAKVGFKMFLGVNAHVGDWDANRKEFHLTIEDNPLIDFVELPDQYK 128

Query:   128 G-LYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 180
               LYY NIL GV+RGALEMV MK + T+++  L  D   E++V L + + +  P
Sbjct:   129 HKLYYSNILCGVMRGALEMVQMKVKCTFVKCTLSDDSTSEIKVVLEEVLSDMIP 182

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

GENEDB_PFALCIPARUM|PFD0895c PFD0895c "Bet3 transport protein, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 97/180 (53%), Positives = 134/180 (74%)

Query:     7 RSGDAIFANVER-NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLA 65
             + GDAIFA +E+ N+ELF+ TYGA V QLL DLE V+EVN+QL++MG+NIG RLI+EFLA
Sbjct:     8 KQGDAIFAKLEKVNSELFSFTYGALVSQLLKDLELVDEVNEQLEKMGFNIGTRLIEEFLA 67

Query:    66 KSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDT 125
             KS+++ C DF ET  VIAKV FKMFLG++ TV+  + +    SII ++NPL DFVELP +
Sbjct:    68 KSDISFCEDFEETVNVIAKVAFKMFLGISGTVTCVNKESNIFSIIFDNNPLSDFVELPKS 127

Query:   126 CQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDDE 185
                L YC++L GVI+GALE + +K    +++D+L+GDD YEL ++L + + EE    D+E
Sbjct:   128 LSSLNYCSLLCGVIKGALEQIRIKVNCYFVKDMLKGDDYYELYIQLNEVMKEEI-LNDEE 186

GO:0005215 "transporter activity" evidence=ISS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS

UNIPROTKB|Q8I1Q2 PFD0895c "Bet3 transport protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 97/180 (53%), Positives = 134/180 (74%)

Query:     7 RSGDAIFANVER-NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLA 65
             + GDAIFA +E+ N+ELF+ TYGA V QLL DLE V+EVN+QL++MG+NIG RLI+EFLA
Sbjct:     8 KQGDAIFAKLEKVNSELFSFTYGALVSQLLKDLELVDEVNEQLEKMGFNIGTRLIEEFLA 67

Query:    66 KSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDT 125
             KS+++ C DF ET  VIAKV FKMFLG++ TV+  + +    SII ++NPL DFVELP +
Sbjct:    68 KSDISFCEDFEETVNVIAKVAFKMFLGISGTVTCVNKESNIFSIIFDNNPLSDFVELPKS 127

Query:   126 CQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDDE 185
                L YC++L GVI+GALE + +K    +++D+L+GDD YEL ++L + + EE    D+E
Sbjct:   128 LSSLNYCSLLCGVIKGALEQIRIKVNCYFVKDMLKGDDYYELYIQLNEVMKEEI-LNDEE 186

GO:0005215 "transporter activity" evidence=ISS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS

ASPGD|ASPL0000037253 AN9086 [Emericella nidulans (taxid:162425)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 93/170 (54%), Positives = 126/170 (74%)

Query:    19 NAELFTLTYGATVRQLLTDLE-EVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRE 77
             NAEL TLTYG  V QL  D +    EVNKQL++MGYNIG+RLI++FLAKSN  RC +FRE
Sbjct:    19 NAELVTLTYGTIVAQLCQDYDGNYPEVNKQLEKMGYNIGMRLIEDFLAKSNAQRCANFRE 78

Query:    78 TAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQG---LYYCNI 134
             TA++I+KVGFK+FL +T TV+NW +D    S+I ++NPL DFVELPD  +    L++ NI
Sbjct:    79 TADMISKVGFKIFLNITPTVTNWASDNNQFSLIFDENPLADFVELPDDGRAQDELWFSNI 138

Query:   135 LSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDD 184
             L G++RGALEMV M+ E  ++ D+LRGDD  E++V L++ + +E P + D
Sbjct:   139 LCGILRGALEMVQMQIEAHFVSDILRGDDTTEMRVSLVRYIEDEVPPESD 188

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0017112 "Rab guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0033106 "cis-Golgi network membrane" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

POMBASE|SPAC644.18c bet3 "TRAPP complex subunit Bet3 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 93/178 (52%), Positives = 127/178 (71%)

Query:     9 GDAIFANVER-NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKS 67
             G+ ++  V++ NAELF LTYG+ V QL  D+   E+VN++LD+MGYNIGIRLI++FLAK+
Sbjct:     7 GEDVYKKVDKVNAELFVLTYGSIVAQLCKDMN-YEKVNEELDKMGYNIGIRLIEDFLAKT 65

Query:    68 NVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELP-DTC 126
                RC DFRET E +AKVGFK+FL  +  +S+   DG    + L+DNPL +FVELP D  
Sbjct:    66 EWPRCADFRETGETVAKVGFKVFLNFSPIISSVSDDGNTFVLTLDDNPLAEFVELPADAR 125

Query:   127 QGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDD 184
             Q L+Y NIL GVIRGALEM+ M  +  ++RD+LRGD+  E++V L + + EE P  D+
Sbjct:   126 QKLWYSNILCGVIRGALEMLQMDVDAVFLRDILRGDEHTEIRVHLKRILKEEIPPGDE 183

GO:0005634 "nucleus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=ISO

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0030008 "TRAPP complex" evidence=ISO

GO:0032313 "regulation of Rab GTPase activity" evidence=IC

GO:0017112 "Rab guanyl-nucleotide exchange factor activity" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZI57	TPPC3_CHICK	No assigned EC number	0.5864	0.8756	0.9	yes	no
Q86K94	TPPC3_DICDI	No assigned EC number	0.5659	0.9729	0.9677	yes	no
P36149	BET3_YEAST	No assigned EC number	0.4611	0.9513	0.9119	yes	no
O43617	TPPC3_HUMAN	No assigned EC number	0.5740	0.8756	0.9	yes	no
Q5U1Z2	TPPC3_RAT	No assigned EC number	0.5802	0.8756	0.9	yes	no
O55013	TPPC3_MOUSE	No assigned EC number	0.5802	0.8756	0.9	yes	no
Q9P6P5	BET3_SCHPO	No assigned EC number	0.5166	0.9567	0.9672	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	185
pfam04051	148	pfam04051, TRAPP, Transport protein particle (TRAP	1e-58
COG5128	208	COG5128, COG5128, Transport protein particle (TRAP	1e-04

>gnl|CDD|217862 pfam04051, TRAPP, Transport protein particle (TRAPP) component

 Score =  179 bits (457), Expect = 1e-58
 Identities = 67/152 (44%), Positives = 83/152 (54%), Gaps = 5/152 (3%)

Query: 22  LFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEV 81
           LF L YG  V  LL D   VE+VN +L++MGYNIG RLI+  LA+S   RC D  E  + 
Sbjct: 1   LFALLYGELVSYLLRD---VEDVNARLEKMGYNIGQRLIERLLARSGSKRCTDLLEVLKF 57

Query: 82  IAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRG 141
           I K  +KM  G  A V     DG    +I  DNPL  FVELP    GL Y N L G+IRG
Sbjct: 58  ICKDLWKMLFGKQADVLETSHDGE-YVLIDNDNPLSQFVELPPDYSGLNYLNFLCGIIRG 116

Query: 142 ALEMVSMKTEVTWIRDVLRGDDA-YELQVKLL 172
           AL  +    +VT   D LRG    +E++ +  
Sbjct: 117 ALSSLGFPAKVTAHSDPLRGPGTVFEIKFEKS 148

TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment. TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterized TRAPP proteins and has a dimeric structure with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi. Length = 148

>gnl|CDD|227457 COG5128, COG5128, Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 31/149 (20%), Positives = 63/149 (42%), Gaps = 14/149 (9%)

Query: 13  FANVERNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRC 72
               E         +   +  L+     +++   +L  +GY +GI+L+ E     N  R 
Sbjct: 35  IMKREVPLSTMAFLFCEMIEYLMEQRSGIQDFEAKLKSIGYEVGIKLL-ELC---NFRRR 90

Query: 73  VDFRET--AEVIAKVGFKMFLGVTATVSN-----WDADGTCCSIILEDNPLVD-FVELPD 124
              RE     ++ ++ F ++  +     +      + D     +I++++PL+  F+ +PD
Sbjct: 91  NPKREVRILTILQRIHFDLWSYLFGDSDDRLEKSREVDRE--YMIVDNDPLLSRFISVPD 148

Query: 125 TCQGLYYCNILSGVIRGALEMVSMKTEVT 153
              GL   +I+ G+I+G L       EVT
Sbjct: 149 EWNGLSCDSIVCGIIQGFLMAAGFPCEVT 177

Length = 208

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	185
KOG3330	183	consensus Transport protein particle (TRAPP) compl	100.0
PTZ00391	168	transport protein particle component (TRAPP) super	100.0
PF04051	152	TRAPP: Transport protein particle (TRAPP) componen	100.0
KOG3315	191	consensus Transport protein particle (TRAPP) compl	100.0
COG5128	208	Transport protein particle (TRAPP) complex subunit	100.0
KOG3316	163	consensus Transport protein particle (TRAPP) compl	100.0
COG1719	158	Predicted hydrocarbon binding protein (contains V4	95.5
PF02830	62	V4R: V4R domain; InterPro: IPR004096 Central cellu	92.34
TIGR02019	188	BchJ bacteriochlorophyll 4-vinyl reductase. This m	89.18
COG2345	218	Predicted transcriptional regulator [Transcription	87.58
PF14196	149	ATC_hydrolase: L-2-amino-thiazoline-4-carboxylic a	86.2

>KOG3330 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.9e-58  Score=361.66  Aligned_cols=179  Identities=60%  Similarity=0.985  Sum_probs=173.8

Q ss_pred             CCcchhhhhccch-hhhHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 029904            6 PRSGDAIFANVER-NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAK   84 (185)
Q Consensus         6 ~~~g~~~~~~~~~-s~~~f~ll~~elV~q~~~~~~~~~ev~~~Le~mGy~IG~RL~E~~~~r~~~~R~~~~ld~l~fI~k   84 (185)
                      ++.|+++|++.+| |+|+|.+|||+||+|+|+|+++.++||++|++||||||.||+|+|++|++.|||.|++++.+.|||
T Consensus         3 ~~~g~~i~~~~~k~naELFtLTYGaiV~ql~kDyed~e~Vn~qLdkMGyNiG~RLiedFLAks~vpRC~dfretaevlak   82 (183)
T KOG3330|consen    3 KAIGQAIAKKSKKMNAELFTLTYGAIVTQLCKDYEDPEDVNKQLDKMGYNIGIRLIEDFLAKSNVPRCVDFRETAEVLAK   82 (183)
T ss_pred             hhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhcCHHHHHHHHHhccchhhHHHHHHHHhhcCCchhhhHHHHHHHHHH
Confidence            4689999999999 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcCccccccccCCCCCeEEEEecCCcccccccCCCc-cCCCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCC
Q 029904           85 VGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDT-CQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDD  163 (185)
Q Consensus        85 ~~Wk~~fgk~ad~l~~t~~~~~y~L~~d~npl~~fvslP~~-~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~l~g~~  163 (185)
                      .+||||+|+++....|++++++|+|++++|||.+||+.|++ .+.+||++++||+|||||++++|+|.|.|++|.++||.
T Consensus        83 ~afkmyLgitpsitswss~~~efsliLe~NPL~efVe~p~d~~ssL~YsnlLcGviRGALEmV~m~~dv~f~~d~lrGd~  162 (183)
T KOG3330|consen   83 VAFKMYLGITPSITSWSSDGNEFSLILEDNPLVEFVEEPPDARSSLWYSNLLCGVIRGALEMVQMKVDVVFLSDTLRGDS  162 (183)
T ss_pred             hhhheeeecccceeeecCCCCEEEEEecCCcHHHHHHhCHHHhhhHHHHHHHHHHHHhHHHHHhhhheeeeeeehhcCCC
Confidence            99999999999999999999999999999999999987766 56799999999999999999999999999999999999


Q ss_pred             ceEEEEEecccccccCCCCCC
Q 029904          164 AYELQVKLLKQVPEEYPYKDD  184 (185)
Q Consensus       164 ~t~~~Ikf~~~~~~~~~~~~~  184 (185)
                      .|+|+|+|.+++.|++|+++|
T Consensus       163 ~tEIrv~f~r~lkde~P~ged  183 (183)
T KOG3330|consen  163 VTEIRVRFLRILKDELPAGED  183 (183)
T ss_pred             ceeeeeeHHHHHhhhcCCCCC
Confidence            999999999999999999986

>PTZ00391 transport protein particle component (TRAPP) superfamily; Provisional

Probab=100.00  E-value=4e-50  Score=322.78  Aligned_cols=157  Identities=17%  Similarity=0.242  Sum_probs=142.3

Q ss_pred             hhhHHHHHHHHHHHHHHhccc-cHHHHHHHHHHhhhhHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHhhhhhhcCcccc
Q 029904           19 NAELFTLTYGATVRQLLTDLE-EVEEVNKQLDQMGYNIGIRLIDEFLAKS-NVTRCVDFRETAEVIAKVGFKMFLGVTAT   96 (185)
Q Consensus        19 s~~~f~ll~~elV~q~~~~~~-~~~ev~~~Le~mGy~IG~RL~E~~~~r~-~~~R~~~~ld~l~fI~k~~Wk~~fgk~ad   96 (185)
                      |+|+|+|||+||| ||++++. +.++++++|++|||+||.||+|++..|+ +.+|+++++++|+|||+++|+.+||||+|
T Consensus         2 slsafafLf~EmV-~y~~~~~~~~~ele~rL~~~G~~VG~rllE~l~~r~~~~~R~~~~L~iLkFI~~~~W~~lFgk~aD   80 (168)
T PTZ00391          2 SLSSFAFLFSEIV-QYCLSKSKRGYRLEDKLHEMGLRVGYKLNELLPYREKNQKRETKILSILTFISKHVWKYLFGHSSD   80 (168)
T ss_pred             CHHHHHHHHHHHH-HHHHhcCCcHHHHHHHHHHHhHHHhHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHHHhCchhh
Confidence            7899999999999 7888776 8889999999999999999999999886 46899999999999999999999999999


Q ss_pred             ccccCCCCCeEEEEecCCcc-cccccCCCccCCCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCC-ceEEEEEeccc
Q 029904           97 VSNWDADGTCCSIILEDNPL-VDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDD-AYELQVKLLKQ  174 (185)
Q Consensus        97 ~l~~t~~~~~y~L~~d~npl-~~fvslP~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~l~g~~-~t~~~Ikf~~~  174 (185)
                      +|+.++++|+|||+ |++|+ ++|+|+|++++.++|++|+||||||||+++||+|+|+....+..+.| +|+|.|||+++
T Consensus        81 ~Lkt~d~~~~Y~i~-Dn~~~~~~~iS~p~~~~~~~~~aF~~GII~G~L~~~Gf~a~VTA~~~~~~~~~~~t~~likf~~~  159 (168)
T PTZ00391         81 LLKSQDSDDEYMIN-DKNLLLNKFISVPKDLGHINCAAFAAGIVEGILCSAEFPANVTAHTVEDTPKNFSTTILIKFYPE  159 (168)
T ss_pred             hhcccCCCCeEEEE-eCchhheeeeeccccccccchhhhhHHHHHHHHhhCCCCcEEEEEeccCCCCCCceEEEEEecHH
Confidence            99855789999999 99997 67999999999999999999999999999999886666555444544 99999999999


Q ss_pred             ccc
Q 029904          175 VPE  177 (185)
Q Consensus       175 ~~~  177 (185)
                      |.+
T Consensus       160 v~~  162 (168)
T PTZ00391        160 VIE  162 (168)
T ss_pred             HHH
Confidence            875

>PF04051 TRAPP: Transport protein particle (TRAPP) component; InterPro: IPR007194 TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment

Probab=100.00  E-value=3.8e-47  Score=300.79  Aligned_cols=150  Identities=39%  Similarity=0.563  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHhhhhhhcCcccccccc
Q 029904           22 LFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAK-SNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNW  100 (185)
Q Consensus        22 ~f~ll~~elV~q~~~~~~~~~ev~~~Le~mGy~IG~RL~E~~~~r-~~~~R~~~~ld~l~fI~k~~Wk~~fgk~ad~l~~  100 (185)
                      +|+|||+|||+++.+ +++.++++++|++|||+||.||+|+++.+ ...+||.+++|+++||||++|+++||||+|+|+ 
T Consensus         1 ~f~~l~~e~V~~~~~-~~~~~e~~~~Le~~G~~vG~rl~E~~~~~~~~~~r~~~~~~~~~fI~k~~W~~~fgk~~d~l~-   78 (152)
T PF04051_consen    1 AFALLFGEMVQYLLR-REDVEEVNKRLERMGYNVGQRLAERLLRRRKNSPRFTDILDILKFICKDFWKMLFGKQADNLK-   78 (152)
T ss_dssp             HHHHHHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSTCSTSSHHHHHHHHHHHHHHHHHSS--SEEE-
T ss_pred             CHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhHHHHHHHHHHhccCcccCCHHHHHHHHHHHHHHHHhCCCCcccc-
Confidence            699999999966666 55999999999999999999999999998 567999999999999999999999999999999 


Q ss_pred             CCC-CCeEEEEecCCcccccccCCCccCCCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCCceEEEEEeccc
Q 029904          101 DAD-GTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQ  174 (185)
Q Consensus       101 t~~-~~~y~L~~d~npl~~fvslP~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~l~g~~~t~~~Ikf~~~  174 (185)
                      +|| +|+|+|+..++|+++|+++|++++.++|++|+||||||||+++||+|+|++..+.+ .+|.++|.|||+++
T Consensus        79 ~n~~~~~y~i~d~~~~~~~~v~~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~-~~~~~~f~Ik~~~~  152 (152)
T PF04051_consen   79 TNHDRGEYVITDNDFPLNQFVSLPEEYEGLNYLAFPCGIIRGALESLGFPAEVTAESDPL-NGPQTTFQIKFEKQ  152 (152)
T ss_dssp             EETTSTEEEEEEST-CCCTTSTTCGCGTTSHTTHHHHHHHHHHHHHTTEEEEEEEEECCC-GTTEEEEEEEEEHH
T ss_pred             ccCCCCeEEEecCccchhhhhccchhhccCchhhhHHHHHHHHHHHCCCceEEEEEEecc-CCCCeEEEEEEecC
Confidence            555 99999995557789999999988899999999999999999999999999999988 34789999999863

TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterised TRAPP proteins and has a dimeric structure [] with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi [].; PDB: 2J3R_A 1WC9_A 2J3T_A 2PWN_A 2J3W_E 1WC8_A 3CUE_N 2C0J_B 3KXC_A 2CFH_A ....

>KOG3315 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.7e-43  Score=277.65  Aligned_cols=164  Identities=20%  Similarity=0.359  Sum_probs=147.0

Q ss_pred             CCcchhhhhc------cchhhhHHHHHHHHHHHHHHhccc-cHHHHHHHHHHhhhhHHHHHHHHHHhhc-CCCCCCCHHH
Q 029904            6 PRSGDAIFAN------VERNAELFTLTYGATVRQLLTDLE-EVEEVNKQLDQMGYNIGIRLIDEFLAKS-NVTRCVDFRE   77 (185)
Q Consensus         6 ~~~g~~~~~~------~~~s~~~f~ll~~elV~q~~~~~~-~~~ev~~~Le~mGy~IG~RL~E~~~~r~-~~~R~~~~ld   77 (185)
                      .+.+.+|+++      ++.|+|+|||||+||| ||++... ++.+++.+|.++||+||.||+|.+..|+ +.+|+++++.
T Consensus         9 ~~~~s~il~~~L~~~rtEvslS~fA~Lfsemi-qy~q~qv~tv~d~e~kL~~~G~~VG~rllel~~~rEr~~kREtkilg   87 (191)
T KOG3315|consen    9 MRIPSNILDKSLSKGRTEVSLSAFAFLFSEMI-QYLQSQVFTVADLETKLADYGYQVGIRLLELLNFRERGQKRETKILG   87 (191)
T ss_pred             cccccchhhhhhhccCccccHHHHHHHHHHHH-HHHHHhcccHHHHHHHHHHHHHHHhHHHHHHHHHHhhcchhHHHHHH
Confidence            3445555543      3449999999999999 8999886 9999999999999999999999999997 6789999999


Q ss_pred             HHHHHHHhhhhhhcCccccccc-cCCCCCeEEEEecCCcc-cccccCCCccCCCcchhhhhHHHHHHhhcCCceE--EEE
Q 029904           78 TAEVIAKVGFKMFLGVTATVSN-WDADGTCCSIILEDNPL-VDFVELPDTCQGLYYCNILSGVIRGALEMVSMKT--EVT  153 (185)
Q Consensus        78 ~l~fI~k~~Wk~~fgk~ad~l~-~t~~~~~y~L~~d~npl-~~fvslP~~~~~l~y~~~~cGiIrGaL~~lg~~~--~v~  153 (185)
                      ++.||+.++||++|||.+|.|+ .+++.++|+|+ |++|+ ++|+|+|++++.++|.+|+||||+|+|.+.||+|  |||
T Consensus        88 iL~fi~~tvwk~Lfgk~ad~LEka~d~~~tYmii-d~~pl~n~fISVPke~~~lnc~~fvaGIiea~L~~agfpckVTAh  166 (191)
T KOG3315|consen   88 ILQFIHSTVWKYLFGKEADKLEKANDDDRTYMII-DKEPLVNTFISVPKENGTLNCAAFVAGIIEAVLDNAGFPCKVTAH  166 (191)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHhcccccceEEEE-cCcchhhhceecccccCcccHHHHHHHHHHHHHHhCCCCCceeee
Confidence            9999999999999999999995 57889999999 99998 6699999999999999999999999999999977  777


Q ss_pred             EeecccCCCCceEEEEEecccccc
Q 029904          154 WIRDVLRGDDAYELQVKLLKQVPE  177 (185)
Q Consensus       154 ~~~d~l~g~~~t~~~Ikf~~~~~~  177 (185)
                      |++      .+|+++|||++.|.+
T Consensus       167 ~~P------~gt~~~IkF~~~Via  184 (191)
T KOG3315|consen  167 WHP------EGTTYLIKFDESVIA  184 (191)
T ss_pred             ecC------CCCeEEEEecHHHHh
Confidence            776      249999999999865

>COG5128 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

Probab=100.00  E-value=3.8e-40  Score=262.59  Aligned_cols=174  Identities=18%  Similarity=0.300  Sum_probs=155.8

Q ss_pred             CCCCCcchhhhhc------cchhhhHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhHHHHHHHHHHhhc-CCCCCCCH
Q 029904            3 PVGPRSGDAIFAN------VERNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKS-NVTRCVDF   75 (185)
Q Consensus         3 ~~~~~~g~~~~~~------~~~s~~~f~ll~~elV~q~~~~~~~~~ev~~~Le~mGy~IG~RL~E~~~~r~-~~~R~~~~   75 (185)
                      +.++-+|+.+|..      .+.++|+|+|+|.||+.++........+++.+|.++||+||+||+|++.+|. +.+|+.++
T Consensus        19 s~a~~m~~~vy~qnl~~~~~ev~lStmaflf~emI~~l~~q~s~~~dfE~kL~~~Gy~vGikLlEL~nfr~rnpkre~rI   98 (208)
T COG5128          19 STAPLMGKSVYEQNLKIMKREVPLSTMAFLFCEMIEYLMEQRSGIQDFEAKLKSIGYEVGIKLLELCNFRRRNPKREVRI   98 (208)
T ss_pred             ccccccchhHHHHhHHHHhccCchHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhhHHHHHHHHHHHHHhhhCccchhhH
Confidence            4578899999853      2339999999999999666656668999999999999999999999999987 78899999


Q ss_pred             HHHHHHHHHhhhhhhcCccccccc-cCCCCCeEEEEecCCcc-cccccCCCccCCCcchhhhhHHHHHHhhcCCceEEEE
Q 029904           76 RETAEVIAKVGFKMFLGVTATVSN-WDADGTCCSIILEDNPL-VDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVT  153 (185)
Q Consensus        76 ld~l~fI~k~~Wk~~fgk~ad~l~-~t~~~~~y~L~~d~npl-~~fvslP~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~  153 (185)
                      ++++++|+-++|+++||+.+|.+. +.+..++|||+ |++|+ ++|+|+|+++++++|.+|+||||+|+|.+.||+|.|+
T Consensus        99 l~iLq~ih~~lwsylf~~~~d~leKs~e~d~eYmiv-Dn~plls~FIsvP~E~n~lsc~~~vcGiI~gfL~~agfpc~vt  177 (208)
T COG5128          99 LTILQRIHFDLWSYLFGDSDDRLEKSREVDREYMIV-DNDPLLSRFISVPDEWNGLSCDSIVCGIIQGFLMAAGFPCEVT  177 (208)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHhhhcCceeEEe-cCchHHHHHhcCcchhcCcchHHHHHHHHHHHHHhcCCCCcce
Confidence            999999999999999999999994 46778999999 99997 7899999999999999999999999999999999888


Q ss_pred             EeecccCCCC-ceEEEEEecccccc
Q 029904          154 WIRDVLRGDD-AYELQVKLLKQVPE  177 (185)
Q Consensus       154 ~~~d~l~g~~-~t~~~Ikf~~~~~~  177 (185)
                      ..+.+..+.| +|+|+|++++.|.+
T Consensus       178 Ah~~P~~~~p~Rtv~lI~~d~~vi~  202 (208)
T COG5128         178 AHPEPSENLPNRTVFLIRIDDLVIA  202 (208)
T ss_pred             eccCcccCCCcceEEEEEecHHHHh
Confidence            8777777755 99999999998864

>KOG3316 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.5e-35  Score=229.63  Aligned_cols=145  Identities=16%  Similarity=0.174  Sum_probs=115.4

Q ss_pred             hHHHHHHHHHHHHHHhccc----------cHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhhh
Q 029904           21 ELFTLTYGATVRQLLTDLE----------EVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMF   90 (185)
Q Consensus        21 ~~f~ll~~elV~q~~~~~~----------~~~ev~~~Le~mGy~IG~RL~E~~~~r~~~~R~~~~ld~l~fI~k~~Wk~~   90 (185)
                      -+|++|+.|||+ ++...+          ...+..++||.|||+||.+|.|+++.  +++|+.+.+|+|||||||+|+..
T Consensus         5 v~f~~Lh~EmV~-~~~~~e~d~e~g~~~~~k~~~~~~LE~IGFqVG~~L~Erl~~--e~~rf~deLeimKFiCkDfW~~V   81 (163)
T KOG3316|consen    5 VLFDFLHNEMVH-TALRSEEDSENGRASIEKSHDLARLESIGFQVGRKLSERLTR--ERNRFKDELEIMKFICKDFWSIV   81 (163)
T ss_pred             HHHHHHHHHHHH-HHHHhcchhhcccccccchHHHHHHHHhhhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHH
Confidence            369999999995 444331          23346799999999999999999995  46799999999999999999999


Q ss_pred             cCccccccccCCCCCeEEEEecCC--cccccccCCCc-cCCCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCCceEE
Q 029904           91 LGVTATVSNWDADGTCCSIILEDN--PLVDFVELPDT-CQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYEL  167 (185)
Q Consensus        91 fgk~ad~l~~t~~~~~y~L~~d~n--pl~~fvslP~~-~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~l~g~~~t~~  167 (185)
                      |+||+|||| |||+|+|||+ |+.  +|+++..--+. .....|++|+||+|||+|+++|+++.|+..-.   .-|.+-|
T Consensus        82 F~KQiDNLr-TNhrG~yVlq-D~~Fr~l~~~s~G~~~~~~a~~flaFpcGliRGvLs~LGi~siVtA~v~---slPtckF  156 (163)
T KOG3316|consen   82 FKKQIDNLR-TNHRGTYVLQ-DNKFRWLTSMSPGTQYLEEAPKFLAFPCGLIRGVLSNLGISSIVTASVS---SLPTCKF  156 (163)
T ss_pred             Hhhhhhhcc-ccCCceEEEe-cCceeeeeecCchhHHHHhcCCeEEeehhHHHHHHhhCCCceEEeeecC---CCCceEE
Confidence            999999999 9999999998 553  34444321111 23458999999999999999999987765332   2378999


Q ss_pred             EEEecc
Q 029904          168 QVKLLK  173 (185)
Q Consensus       168 ~Ikf~~  173 (185)
                      +|++.+
T Consensus       157 hV~v~~  162 (163)
T KOG3316|consen  157 HVQVQP  162 (163)
T ss_pred             EEEecC
Confidence            998764

>COG1719 Predicted hydrocarbon binding protein (contains V4R domain) [General function prediction only]

Probab=95.50  E-value=0.54  Score=37.49  Aligned_cols=132  Identities=22%  Similarity=0.232  Sum_probs=78.4

Q ss_pred             hhhHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhhhcCcccccc
Q 029904           19 NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVS   98 (185)
Q Consensus        19 s~~~f~ll~~elV~q~~~~~~~~~ev~~~Le~mGy~IG~RL~E~~~~r~~~~R~~~~ld~l~fI~k~~Wk~~fgk~ad~l   98 (185)
                      ..+..++.++.+. -+.....  ......+.++|+.+|..++.          ...+.++..|+.-  |....+...+.-
T Consensus        25 ~~~~~~~~~~~~~-~~~~~~~--~~~~~~~y~~G~~~G~~l~~----------~~~~~~~~~f~~~--~~~~~~~v~~~~   89 (158)
T COG1719          25 DIEVDAFLIAALR-ALKKYLG--IGAEPVLYEAGKEIGKALIK----------EKLIEELENFLEF--WEEVGGGVLEVE   89 (158)
T ss_pred             cccHHHHHHHHHH-HHHHHhc--cCcHHHHHHHHHHHHHHhcc----------hhchHHHHHHHHH--HHhhcceEEEcc
Confidence            4555666666555 2222222  12245788899999998886          2233444444422  665555433332


Q ss_pred             ccCCCCCeEEEEecCCcccccccCCCccCCCcchhhhhHHHHHHhhcCCc-eEEEEEeecccCCCCceEEEEEecc
Q 029904           99 NWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSM-KTEVTWIRDVLRGDDAYELQVKLLK  173 (185)
Q Consensus        99 ~~t~~~~~y~L~~d~npl~~fvslP~~~~~l~y~~~~cGiIrGaL~~lg~-~~~v~~~~d~l~g~~~t~~~Ikf~~  173 (185)
                        .+......+. +..+-..   +|.  .+-.-+.+.+|+|.|+|+...= ++.|.=++....|++.++|+|+...
T Consensus        90 --~~~~~~v~v~-~c~~c~~---~p~--~~ePvC~~~aG~iag~l~~~~~k~~~v~Et~C~~~G~~~C~F~i~~~~  157 (158)
T COG1719          90 --EEEPLVVEVY-DCIECAG---LPG--IGEPVCHLEAGFIAGFLEEILGKKVEVEETECAAEGDDRCVFEIRLKD  157 (158)
T ss_pred             --cCCCceEEEE-cCchhhc---CCC--CCCcchhHHhhHHHHHHHHHhCCCeEEEEEEEeecCCCceEEEEEecC
Confidence              1112333332 3332233   443  2334578999999999998655 5678778888889999999998754

>PF02830 V4R: V4R domain; InterPro: IPR004096 Central cellular functions such as metabolism, solute transport and signal transduction are regulated, in part, via binding of small molecules by specialised domains

Probab=92.34  E-value=0.33  Score=32.46  Aligned_cols=40  Identities=23%  Similarity=0.361  Sum_probs=31.9

Q ss_pred             chhhhhHHHHHHhhc-CCceEEEEEeecccCCCCceEEEEE
Q 029904          131 YCNILSGVIRGALEM-VSMKTEVTWIRDVLRGDDAYELQVK  170 (185)
Q Consensus       131 y~~~~cGiIrGaL~~-lg~~~~v~~~~d~l~g~~~t~~~Ik  170 (185)
                      -.+|.+|++.|+++. .|-+++|+=++....|++..+|.|+
T Consensus        21 ~C~~~~G~~~G~~~~~~~~~~~v~E~~C~a~G~~~C~F~i~   61 (62)
T PF02830_consen   21 VCWFTAGYLAGFFSALFGKEVEVEETKCQAMGDDHCEFVIR   61 (62)
T ss_dssp             --HHHHHHHHHHHHHHHSSEEEEEEEE-GGGT-SSEEEEEE
T ss_pred             eEHHHHHHHHHHHHHHhCCceEEEEeEEEcCCCCeeEEEEE
Confidence            457999999999965 4668899999999999999999986

The 4-vinyl reductase (4VR) domain is a predicted small molecular binding domain, that may bind to hydrocarbons []. Proteins that contain this domain include a regulator of the phenol catabolic pathway and a protein involved in chlorophyll biosynthesis.; PDB: 2OSD_A 2OSO_A.

>TIGR02019 BchJ bacteriochlorophyll 4-vinyl reductase

Probab=89.18  E-value=2.2  Score=35.24  Aligned_cols=117  Identities=15%  Similarity=0.160  Sum_probs=63.6

Q ss_pred             HHHHHHHHHhhhhHHHHH-HHHHHhhcCCCCCCCHHH-------HHHHHHHhhhhhhcCccccccccCCCCCeEEEEecC
Q 029904           42 EEVNKQLDQMGYNIGIRL-IDEFLAKSNVTRCVDFRE-------TAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILED  113 (185)
Q Consensus        42 ~ev~~~Le~mGy~IG~RL-~E~~~~r~~~~R~~~~ld-------~l~fI~k~~Wk~~fgk~ad~l~~t~~~~~y~L~~d~  113 (185)
                      +.-..-|.+.|.+.|.++ .+++-.  -..+..+.++       .+.-|.|++|+ +-|---  +. -..++.-+|...+
T Consensus        63 ~aa~~vl~~~G~~ta~y~l~~rIp~--~~q~~Lr~lp~~~~~r~l~~aI~k~aWt-f~G~G~--fs-~~~~~~l~i~I~d  136 (188)
T TIGR02019        63 TAAARLLRESGLATADYILANRIPP--PAQRLIRALPAGLAARVLLTAIAKHAWT-FAGSGK--FR-YVSGPPLSFEIAR  136 (188)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhhH--HHHHHHHHCChHHHHHHHHHHHHHHHHh-hcccce--EE-EeeCCCeEEEEec
Confidence            344566777777666666 333221  0111222222       34456899996 322111  21 1122223333355


Q ss_pred             CcccccccCCCccCCCcchhhhhHHHHHHhhcC-CceEEEEEeecccCCCCceEEEE
Q 029904          114 NPLVDFVELPDTCQGLYYCNILSGVIRGALEMV-SMKTEVTWIRDVLRGDDAYELQV  169 (185)
Q Consensus       114 npl~~fvslP~~~~~l~y~~~~cGiIrGaL~~l-g~~~~v~~~~d~l~g~~~t~~~I  169 (185)
                      +|...-  +|.  +... +.|-+|+++|.++.+ +=+++|.-+...-.|++.+.|.|
T Consensus       137 s~~a~~--~~~--~~P~-C~~~aGife~lFs~lv~~~~~v~Et~C~a~G~~~C~F~~  188 (188)
T TIGR02019       137 NPVVAG--ESS--DTPV-CHWYAAVFERLLRRLVWPHVAVRETACCAKGAPRCRFEL  188 (188)
T ss_pred             Chhhhc--CCC--CCce-eeeeHHHHHHHHHHHhCCCceEEeehHhhcCCCcceeeC
Confidence            555432  121  3333 668899999998864 55778888888888999988864

This model represents the component of bacteriochlorophyll synthetase responsible for reduction of the B-ring pendant ethylene (4-vinyl) group. It appears that this step must precede the reduction of ring D, at least by the "dark" protochlorophyllide reductase enzymes BchN, BchB and BchL. This family appears to be present in photosynthetic bacteria except for the cyanobacterial clade. Cyanobacteria must use a non-orthologous gene to carry out this required step for the biosynthesis of both bacteriochlorophyll and chlorophyll.

>COG2345 Predicted transcriptional regulator [Transcription]

Probab=87.58  E-value=4.7  Score=34.09  Aligned_cols=143  Identities=19%  Similarity=0.241  Sum_probs=88.1

Q ss_pred             hhhccchhhhHHHHHHHHHHHHHHhccc---cHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhh
Q 029904           12 IFANVERNAELFTLTYGATVRQLLTDLE---EVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFK   88 (185)
Q Consensus        12 ~~~~~~~s~~~f~ll~~elV~q~~~~~~---~~~ev~~~Le~mGy~IG~RL~E~~~~r~~~~R~~~~ld~l~fI~k~~Wk   88 (185)
                      +|+-+++..+.|.--|+++..+++...+   +.+.++.-|++.+-+    +++.+..... + ..+.-+.++-+..-.  
T Consensus        70 ~y~Lt~~g~~~f~~~y~~l~~~~l~~l~~~~G~~~l~~~l~~r~~~----~~~~~~~~~~-~-~~~~ee~~e~Lv~l~--  141 (218)
T COG2345          70 LYRLTEKGREQFPKRYGELALALLDALEETGGEEALNAFLEKRAQA----IGAQYRPAMG-G-DADLEEKVERLVELL--  141 (218)
T ss_pred             eeeecccchhhcchhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH----HHHHHhhcCC-C-CCCHHHHHHHHHHHH--
Confidence            4566677666999999999987776644   555666666665554    4444443211 1 344444444443211  


Q ss_pred             hhcCccccccccCCCCCeEEEEecCCcccccccCCCccCCCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCCceEEE
Q 029904           89 MFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQ  168 (185)
Q Consensus        89 ~~fgk~ad~l~~t~~~~~y~L~~d~npl~~fvslP~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~l~g~~~t~~~  168 (185)
                      .=.|.-+..-.  -+.+.|.|+--|.|+..-..     ....-++.-+++++++|....+..+++.+.    |...+++.
T Consensus       142 ~~~gy~~e~~~--~~~~~~~l~e~nCPi~~vA~-----~~~~~C~~e~~~~~~~Lg~~~v~~~~~~~~----g~~~C~~~  210 (218)
T COG2345         142 SDLGYMPELRP--VDNGRVQLIEHNCPISAVAE-----EFPVACESELALFAEVLGTAHVERTEHILD----GPGRCTYH  210 (218)
T ss_pred             HhCCccccccc--cCCCceEEEecCCchHHHHH-----HhHHHHHHHHHHHHHHhccCCccceeeeec----CCCceEEE
Confidence            22444444432  33577888856679755322     234566777888999998877777766554    66799999


Q ss_pred             EEecc
Q 029904          169 VKLLK  173 (185)
Q Consensus       169 Ikf~~  173 (185)
                      |+..+
T Consensus       211 v~~~~  215 (218)
T COG2345         211 VKLES  215 (218)
T ss_pred             eecCC
Confidence            98764

>PF14196 ATC_hydrolase: L-2-amino-thiazoline-4-carboxylic acid hydrolase

Probab=86.20  E-value=9.9  Score=28.76  Aligned_cols=133  Identities=17%  Similarity=0.202  Sum_probs=72.9

Q ss_pred             hhhHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhhhcCcccccc
Q 029904           19 NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVS   98 (185)
Q Consensus        19 s~~~f~ll~~elV~q~~~~~~~~~ev~~~Le~mGy~IG~RL~E~~~~r~~~~R~~~~ld~l~fI~k~~Wk~~fgk~ad~l   98 (185)
                      .+..|..+|-++...+-. .+-.+-+.+-+.+.|...|.++.++...    + ..++....+.....-+...|.   ...
T Consensus        13 ~a~~~~~ly~~~~~~~~~-e~~~~~~~~a~~~~~~~~g~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~---~~~   83 (149)
T PF14196_consen   13 RAFWFYALYKALIEEMGP-EEAEEIIREAIRRFGRKRGKALAERMRR----K-PDDFEKFAEMMKDYPSDWVFE---EVV   83 (149)
T ss_pred             HHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhh----c-hhhHHHHHHHHhcCCccccce---eee
Confidence            344444444444422211 1123345678888888888887776653    1 333333333111111222222   222


Q ss_pred             ccCCCCCeEEEEecCCcccc-cccCCCccCCCcchhhhhHHHHHHhhcC--CceEEEEEeecccCCCCceEEE
Q 029904           99 NWDADGTCCSIILEDNPLVD-FVELPDTCQGLYYCNILSGVIRGALEMV--SMKTEVTWIRDVLRGDDAYELQ  168 (185)
Q Consensus        99 ~~t~~~~~y~L~~d~npl~~-fvslP~~~~~l~y~~~~cGiIrGaL~~l--g~~~~v~~~~d~l~g~~~t~~~  168 (185)
                        ..+.+.|.+.+-..|+.+ +.+    ++...+..+.|-+=+++.+.+  |++.+-  .+.-..|++.+.|+
T Consensus        84 --~~~~~~~~~~~~~Cp~~~~~k~----~G~~e~~~~~C~~D~~~~~~~~~~~~l~r--~~tla~G~~~Cdf~  148 (149)
T PF14196_consen   84 --EDDEDEFEFDFTRCPYAEFWKE----YGLPELGPIYCDIDYAMAEGFNPGIRLER--TKTLADGDDCCDFR  148 (149)
T ss_pred             --cCCCCeEEEEEEeChHHHHHHH----cCCchHHhHhhhhhHHHHHhCCCCcEEEE--eeEEeCCCCcCccC
Confidence              355667777777899866 343    344567777888888888888  665432  23344578877764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	185
2j3r_A	182	The Crystal Structure Of The Bet3-Trs31 Heterodimer		3e-53
1wc8_A	180	The Crystal Structure Of Mouse Bet3p Length = 180		3e-53
1sz7_A	200	Crystal Structure Of Human Bet3 Length = 200		7e-53
2cfh_A	194	Structure Of The Bet3-Tpc6b Core Of Trapp Length =		8e-53
1wc9_A	165	The Crystal Structure Of Truncated Mouse Bet3p Leng		3e-52
2c0j_A	161	Crystal Structure Of The Bet3-Trs33 Heterodimer Len		4e-52
3kxc_A	194	Mutant Transport Protein Length = 194		6e-52
2pwn_A	192	Crystal Structure Of Bet3 Homolog (13277653) From M		1e-47
3cue_D	193	Crystal Structure Of A Trapp Subassembly Activating		5e-41

>pdb|2J3R|A Chain A, The Crystal Structure Of The Bet3-Trs31 Heterodimer. Length = 182

Iteration: 1
 Score =  204 bits (518), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 94/162 (58%), Positives = 125/162 (77%)
Query: 19  NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
           ++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRET
Sbjct: 17  SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 76
Query: 79  AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
           A+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV
Sbjct: 77  ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 136
Query: 139 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 180
           +RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct: 137 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 178

>pdb|1WC8|A Chain A, The Crystal Structure Of Mouse Bet3p Length = 180

Iteration: 1
 Score =  204 bits (518), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 94/162 (58%), Positives = 125/162 (77%)
Query: 19  NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
           ++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRET
Sbjct: 15  SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 74
Query: 79  AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
           A+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV
Sbjct: 75  ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 134
Query: 139 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 180
           +RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct: 135 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176

>pdb|1SZ7|A Chain A, Crystal Structure Of Human Bet3 Length = 200

Iteration: 1
 Score =  202 bits (515), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 93/162 (57%), Positives = 125/162 (77%)
Query: 19  NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
           ++ELFTLTYGA V QL  D E  E+VNKQLD+MG+NIG+RLI++FLA+SNV RC DFRET
Sbjct: 24  SSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRET 83
Query: 79  AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
           A+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV
Sbjct: 84  ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGV 143
Query: 139 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 180
           +RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct: 144 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 185

>pdb|2CFH|A Chain A, Structure Of The Bet3-Tpc6b Core Of Trapp Length = 194

Iteration: 1
 Score =  202 bits (514), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 93/162 (57%), Positives = 125/162 (77%)
Query: 19  NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
           ++ELFTLTYGA V QL  D E  E+VNKQLD+MG+NIG+RLI++FLA+SNV RC DFRET
Sbjct: 29  SSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRET 88
Query: 79  AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
           A+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV
Sbjct: 89  ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGV 148
Query: 139 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 180
           +RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct: 149 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 190

>pdb|1WC9|A Chain A, The Crystal Structure Of Truncated Mouse Bet3p Length = 165

Iteration: 1
 Score =  201 bits (510), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 93/157 (59%), Positives = 123/157 (78%)
Query: 19  NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
           ++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRET
Sbjct: 8   SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 67
Query: 79  AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
           A+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV
Sbjct: 68  ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 127
Query: 139 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQV 175
           +RGALEMV M  E  +++D L+GD   E++++ ++++
Sbjct: 128 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRI 164

>pdb|2C0J|A Chain A, Crystal Structure Of The Bet3-Trs33 Heterodimer Length = 161

Iteration: 1
 Score =  200 bits (509), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 93/159 (58%), Positives = 124/159 (77%)
Query: 19  NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
           ++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRET
Sbjct: 1   SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 60
Query: 79  AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
           A+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV
Sbjct: 61  ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 120
Query: 139 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPE 177
           +RGALEMV M  E  +++D L+GD   E++++ ++++ +
Sbjct: 121 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIED 159

>pdb|3KXC|A Chain A, Mutant Transport Protein Length = 194

Iteration: 1
 Score =  199 bits (507), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 92/162 (56%), Positives = 124/162 (76%)
Query: 19  NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
           ++ELFTLTYGA V QL  D E  E+VNKQLD+MG+NIG+RLI++FLA+SNV R  DFRET
Sbjct: 29  SSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRAHDFRET 88
Query: 79  AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
           A+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV
Sbjct: 89  ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGV 148
Query: 139 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 180
           +RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct: 149 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 190

>pdb|2PWN|A Chain A, Crystal Structure Of Bet3 Homolog (13277653) From Mus Musculus At 2.04 A Resolution Length = 192

Iteration: 1
 Score =  185 bits (470), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 89/148 (60%), Positives = 111/148 (75%)
Query: 19  NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
           ++ELFTLTYGA V QL  D E  E+VNKQLD+ GYNIG+RLI++FLA+SNV RC DFRET
Sbjct: 27  SSELFTLTYGALVTQLCKDYENDEDVNKQLDRXGYNIGVRLIEDFLARSNVGRCHDFRET 86
Query: 79  AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
           A+VIAKV FK +LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV
Sbjct: 87  ADVIAKVAFKXYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 146
Query: 139 IRGALEMVSMKTEVTWIRDVLRGDDAYE 166
           +RGALE V    E  +++D L+GD   E
Sbjct: 147 LRGALEXVQXAVEAKFVQDTLKGDGVTE 174

>pdb|3CUE|D Chain D, Crystal Structure Of A Trapp Subassembly Activating The Rab Ypt1p Length = 193

Iteration: 1
 Score =  163 bits (413), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 83/180 (46%), Positives = 122/180 (67%), Gaps = 4/180 (2%)
Query: 9   GDAIFANVER--NAELFTLTYGATVRQLLTDLE-EVEEVNKQLDQMGYNIGIRLIDEFLA 65
           G+ I+ N     N ELFTLTYG+ V QL  D E +  +VN  L  MGYNIG RLI++FLA
Sbjct: 14  GEEIWKNKTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLA 73
Query: 66  KSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELP-D 124
           ++ + RC +  +T+EV++K  FK+FL +T  ++NW  +    S+IL++NPL DFVELP D
Sbjct: 74  RTALPRCENLVKTSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVELPMD 133
Query: 125 TCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDD 184
             + L+Y NIL GV++G+LEMV +  +V ++ D+LRGD   E++VKL + + +E P  +D
Sbjct: 134 AMKSLWYSNILCGVLKGSLEMVQLDCDVWFVSDILRGDSQTEIKVKLNRILKDEIPIGED 193

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	185
3cue_D	193	Transport protein particle 22 kDa subunit; membran	3e-86
1sz7_A	200	BET3 homolog, trafficking protein particle complex	5e-77
2j3w_B	188	ZGC 92866, trafficking protein particle complex pr	3e-33
2bjn_A	160	TPC6, trafficking protein particle complex subunit	6e-18
2c0j_B	160	R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens	6e-14

>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 193

 Score =  251 bits (641), Expect = 3e-86
 Identities = 83/182 (45%), Positives = 122/182 (67%), Gaps = 4/182 (2%)

Query: 7   RSGDAIFANVER--NAELFTLTYGATVRQLLTDLE-EVEEVNKQLDQMGYNIGIRLIDEF 63
             G+ I+ N     N ELFTLTYG+ V QL  D E +  +VN  L  MGYNIG RLI++F
Sbjct: 12  AMGEEIWKNKTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDF 71

Query: 64  LAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELP 123
           LA++ + RC +  +T+EV++K  FK+FL +T  ++NW  +    S+IL++NPL DFVELP
Sbjct: 72  LARTALPRCENLVKTSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVELP 131

Query: 124 -DTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYK 182
            D  + L+Y NIL GV++G+LEMV +  +V ++ D+LRGD   E++VKL + + +E P  
Sbjct: 132 MDAMKSLWYSNILCGVLKGSLEMVQLDCDVWFVSDILRGDSQTEIKVKLNRILKDEIPIG 191

Query: 183 DD 184
           +D
Sbjct: 192 ED 193

>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A* Length = 200

 Score =  227 bits (581), Expect = 5e-77
 Identities = 94/178 (52%), Positives = 131/178 (73%)

Query: 7   RSGDAIFANVERNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAK 66
           R  +    + + ++ELFTLTYGA V QL  D E  E+VNKQLD+MG+NIG+RLI++FLA+
Sbjct: 12  RQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLAR 71

Query: 67  SNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTC 126
           SNV RC DFRETA+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD  
Sbjct: 72  SNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNH 131

Query: 127 QGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDD 184
             L Y N+L GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P  ++
Sbjct: 132 SSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 189

>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B* Length = 188

 Score =  116 bits (291), Expect = 3e-33
 Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 2/139 (1%)

Query: 17  ERNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSN-VTRCVDF 75
           E +   F L +   V+   + +  V E+  +L  MG  +G  L+D  + +     R    
Sbjct: 23  EVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKV 82

Query: 76  RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLV-DFVELPDTCQGLYYCNI 134
                 I    +K   G  A       D      I+E  PL+  ++ +P     L     
Sbjct: 83  LNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAF 142

Query: 135 LSGVIRGALEMVSMKTEVT 153
             G++   L       +VT
Sbjct: 143 TGGIVEAILTHSGFPAKVT 161

>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C* Length = 160

 Score = 75.7 bits (186), Expect = 6e-18
 Identities = 29/140 (20%), Positives = 46/140 (32%), Gaps = 7/140 (5%)

Query: 19  NAELFTLTYGATVRQLLTDLE----EVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVD 74
           +  LF L +   V  +    E    E      +L+ MG+ +G  LI E   K    R  D
Sbjct: 5   DEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLI-ERFTKDT-ARFKD 62

Query: 75  FRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQG-LYYCN 133
             +  + I K  +             +  G       +   L          +    Y  
Sbjct: 63  ELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLA 122

Query: 134 ILSGVIRGALEMVSMKTEVT 153
              G+IRG L  + +K+ VT
Sbjct: 123 FTCGLIRGGLSNLGIKSIVT 142

>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B* Length = 160

 Score = 64.9 bits (158), Expect = 6e-14
 Identities = 26/144 (18%), Positives = 50/144 (34%), Gaps = 14/144 (9%)

Query: 19  NAELFTLTYGATVRQLLTDLEEVEEVNKQ-----LDQMGYNIGIRLIDEFLAKSNVTRCV 73
           +  LF   +   V +L     +     ++     L+ MG+ +G  L  E L +      +
Sbjct: 4   DTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALG-ERLPR----ETL 58

Query: 74  DFRETAEV---IAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQG-L 129
            FRE  +V   + K  +             +  GT          L+         +   
Sbjct: 59  AFREELDVLKFLCKDLWVAVFQKQMDSLRTNHQGTYVLQDNSFPLLLPMASGLQYLEEAP 118

Query: 130 YYCNILSGVIRGALEMVSMKTEVT 153
            +     G++RGAL  + +++ VT
Sbjct: 119 KFLAFTCGLLRGALYTLGIESVVT 142

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	185
3cue_D	193	Transport protein particle 22 kDa subunit; membran	100.0
1sz7_A	200	BET3 homolog, trafficking protein particle complex	100.0
2j3w_B	188	ZGC 92866, trafficking protein particle complex pr	100.0
2c0j_B	160	R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens	100.0
3cue_B	283	Transport protein particle 31 kDa subunit; membran	100.0
2bjn_A	160	TPC6, trafficking protein particle complex subunit	100.0
2oso_A	163	Hypothetical protein MJ1460; structural genomics,	96.45
2kii_A	181	Putative uncharacterized protein; H-NOX, unknown f	95.18
3tfg_A	189	ALR2278 protein; heme-based sensor domain, GAS bin	95.0
3sj5_A	188	Methyl-accepting chemotaxis protein; no or O2-sens	92.57

>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-66  Score=421.95  Aligned_cols=184  Identities=45%  Similarity=0.818  Sum_probs=174.7

Q ss_pred             CCCCCCCcchhhhh-ccch-hhhHHHHHHHHHHHHHHhccc-cHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHH
Q 029904            1 MAPVGPRSGDAIFA-NVER-NAELFTLTYGATVRQLLTDLE-EVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRE   77 (185)
Q Consensus         1 ~~~~~~~~g~~~~~-~~~~-s~~~f~ll~~elV~q~~~~~~-~~~ev~~~Le~mGy~IG~RL~E~~~~r~~~~R~~~~ld   77 (185)
                      |++++++.|+.+|+ +.++ |+|+|+|||+|||+||+++++ +.++++++|++|||+||.||+|+|++|++.+||.++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~Vs~s~f~ll~~elV~q~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~~~~R~~~~le   85 (193)
T 3cue_D            6 QSRSLKAMGEEIWKNKTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLARTALPRCENLVK   85 (193)
T ss_dssp             --CHHHHHHHHHHSSSSCEEEHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHH
T ss_pred             ccccccccchhhhccchhhccHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhCHHHHHHHHHHHHhccCCCccCCHHH
Confidence            45567789999998 7777 999999999999999999998 59999999999999999999999999988899999999


Q ss_pred             HHHHHHHhhhhhhcCccccccccCCCCCeEEEEecCCcccccccCCCcc-CCCcchhhhhHHHHHHhhcCCceEEEEEee
Q 029904           78 TAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTC-QGLYYCNILSGVIRGALEMVSMKTEVTWIR  156 (185)
Q Consensus        78 ~l~fI~k~~Wk~~fgk~ad~l~~t~~~~~y~L~~d~npl~~fvslP~~~-~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~  156 (185)
                      +++||||++||++||||+|+|+||+|+++|+|++|+|||.+|+++|+++ +.++|++|+||||||||+++||+|+|||++
T Consensus        86 ~l~fI~k~~Wk~lfgk~~d~L~~t~~~~~y~L~~d~nPl~~fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~~Vta~~~~  165 (193)
T 3cue_D           86 TSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSNILCGVLKGSLEMVQLDCDVWFVS  165 (193)
T ss_dssp             HHHHHHHHHHHHHSSCCCCCBCCCTTSCCCBCCBSCCGGGSSCCCCTTTTTSCCTTHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred             HHHHHHHHHHHHHhCCCCccceecCCCCEEEEEECCchhhhheeCcHhHHhCcchhhhHHHHHHHHHHhCCCEEEEEEee
Confidence            9999999999999999999999999999999967999999999999998 789999999999999999999999999999


Q ss_pred             cccCCCCceEEEEEecccccccCCCCCC
Q 029904          157 DVLRGDDAYELQVKLLKQVPEEYPYKDD  184 (185)
Q Consensus       157 d~l~g~~~t~~~Ikf~~~~~~~~~~~~~  184 (185)
                      |+++|+++|+|+|||.++|+|++|++||
T Consensus       166 d~l~g~~~t~~~Ikf~~~v~d~~~~~~~  193 (193)
T 3cue_D          166 DILRGDSQTEIKVKLNRILKDEIPIGED  193 (193)
T ss_dssp             CSSSSSSCBCEEEECCCCCSCCCCCTTC
T ss_pred             ccCCCCCCEEEEEEEhhhhhcccCCCCC
Confidence            9999999999999999999999999986

>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*

Probab=100.00  E-value=4.2e-63  Score=406.90  Aligned_cols=176  Identities=53%  Similarity=0.928  Sum_probs=154.5

Q ss_pred             hhhhhccch-hhhHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhh
Q 029904           10 DAIFANVER-NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFK   88 (185)
Q Consensus        10 ~~~~~~~~~-s~~~f~ll~~elV~q~~~~~~~~~ev~~~Le~mGy~IG~RL~E~~~~r~~~~R~~~~ld~l~fI~k~~Wk   88 (185)
                      ..+|+|.++ |+|+|+|||+|||+|++++.++.++++++|++|||+||.||+|+|++|++.+||.+++++++||||++||
T Consensus        14 ~~~~~~~~eVs~s~f~lly~eiV~~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~~~~R~~d~le~l~fI~k~~Wk   93 (200)
T 1sz7_A           14 ANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFK   93 (200)
T ss_dssp             --------CCCSHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCHHHHHHHHHHTHHH
T ss_pred             hhhhcccchhcHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCHHHhHHHHHHHHhccCCCccCCHHHHHHHHHHHHHH
Confidence            467888888 9999999999999999998889999999999999999999999999998889999999999999999999


Q ss_pred             hhcCccccccccCCCCCeEEEEecCCcccccccCCCccCCCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCCceEEE
Q 029904           89 MFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQ  168 (185)
Q Consensus        89 ~~fgk~ad~l~~t~~~~~y~L~~d~npl~~fvslP~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~l~g~~~t~~~  168 (185)
                      ++||||+|+|+||+++++|+|++|+|||.+||++|++++.++|++|+||||||||+++||+|||++++|+++|+++|+|+
T Consensus        94 ~lFgk~ad~L~~t~~~~~Y~L~~D~nPL~~fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~Vta~~~~d~l~g~~~t~~~  173 (200)
T 1sz7_A           94 MYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIR  173 (200)
T ss_dssp             HHHSCCCEEECCCTTSCEEEEEESSCTTCTTCCCCGGGTTCCTTTHHHHHHHHHHHTTTEEEEEEEEECGGGTCSSEEEE
T ss_pred             HHhCCCCccceecCCCCEEEEEECCcHHHHhccCCccccCCchhhhHHHHHHHHHHhCCCEEEEEEEecccCCCCCEEEE
Confidence            99999999999999999999977999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecccccccCCCCCCC
Q 029904          169 VKLLKQVPEEYPYKDDE  185 (185)
Q Consensus       169 Ikf~~~~~~~~~~~~~~  185 (185)
                      |||.++|+|++|++||+
T Consensus       174 Ikf~~~v~~~~~~~~~~  190 (200)
T 1sz7_A          174 MRFIRRIEDNLPAGEEA  190 (200)
T ss_dssp             EEEEEEC----------
T ss_pred             EEEhhhhhhccCCCcch
Confidence            99999999999999984

>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B*

Probab=100.00  E-value=1.5e-53  Score=347.52  Aligned_cols=152  Identities=21%  Similarity=0.314  Sum_probs=141.4

Q ss_pred             hhhHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHhhhhhhcCcccc
Q 029904           19 NAELFTLTYGATVRQLLTDL-EEVEEVNKQLDQMGYNIGIRLIDEFLAKSN-VTRCVDFRETAEVIAKVGFKMFLGVTAT   96 (185)
Q Consensus        19 s~~~f~ll~~elV~q~~~~~-~~~~ev~~~Le~mGy~IG~RL~E~~~~r~~-~~R~~~~ld~l~fI~k~~Wk~~fgk~ad   96 (185)
                      |+|+|+|||+||| ||+++. ++.++++++|++|||+||.||+|++++|+. .+||++++|+++||||++||++||||+|
T Consensus        25 s~s~f~ll~~EiV-~~~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~~R~~d~ld~l~fI~k~~Wk~lfgk~~d  103 (188)
T 2j3w_B           25 SVSAFALLFSEMV-QYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGKEAD  103 (188)
T ss_dssp             EHHHHHHHHHHHH-HHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHHHHHHHHHTHHHHHHHSSCCS
T ss_pred             hHHHHHHHHHHHH-HHHHhhcCchHHHHHHHHHhhHHHhHHHHHHHHhhcCCCcccCCHHHHHHHHHHHHHHHHhCCCcc
Confidence            9999999999999 677665 488999999999999999999999999975 4899999999999999999999999999


Q ss_pred             cccc-CCCCCeEEEEecCCccc-ccccCCCccCCCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCCceEEEEEeccc
Q 029904           97 VSNW-DADGTCCSIILEDNPLV-DFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQ  174 (185)
Q Consensus        97 ~l~~-t~~~~~y~L~~d~npl~-~fvslP~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~l~g~~~t~~~Ikf~~~  174 (185)
                      +|+| |+|+++|+|+ |+||+. +|+|+|++++.++|++|+||||||||+++||+|+|++..     +|+|+|+|||+++
T Consensus       104 ~L~~st~~~~~y~i~-D~npl~~~fvs~p~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vta~~-----~~~t~f~Ikf~~~  177 (188)
T 2j3w_B          104 KLEQANDDDKTYYII-EKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHW-----HKGTTLMIKFDES  177 (188)
T ss_dssp             EEEEETTEEEEEEEE-ESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEEEEEEE-----SSSEEEEEEECHH
T ss_pred             ccccccCCCCEEEEE-cCCcceeeeeecCccccCchhHHHHHHHHHHHHHHCCCceEEEEEe-----CCCEEEEEEecHH
Confidence            9997 8999999996 999997 699999999999999999999999999999998877766     5799999999999


Q ss_pred             ccc
Q 029904          175 VPE  177 (185)
Q Consensus       175 ~~~  177 (185)
                      |.+
T Consensus       178 v~~  180 (188)
T 2j3w_B          178 VIA  180 (188)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B*

Probab=100.00  E-value=1.7e-49  Score=316.42  Aligned_cols=149  Identities=15%  Similarity=0.141  Sum_probs=127.8

Q ss_pred             hhhHHHHHHHHHHHHHHhccc-----cHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhhhcCc
Q 029904           19 NAELFTLTYGATVRQLLTDLE-----EVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGV   93 (185)
Q Consensus        19 s~~~f~ll~~elV~q~~~~~~-----~~~ev~~~Le~mGy~IG~RL~E~~~~r~~~~R~~~~ld~l~fI~k~~Wk~~fgk   93 (185)
                      |.|+|+|||+|||+|++++.+     +.++++++|++|||+||.||+|+++ | +.+||++++|+++||||++||++|||
T Consensus         4 s~s~f~~l~~elV~~~~~~~~~~~~~~~~~v~~~Le~mGy~IG~RLiE~~~-r-~~~r~~d~ld~l~fI~k~~Wk~~fgk   81 (160)
T 2c0j_B            4 DTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGERLP-R-ETLAFREELDVLKFLCKDLWVAVFQK   81 (160)
T ss_dssp             CHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHHHHHHHHHHSC-G-GGGTTCCHHHHHHHHHTHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHhHHHhHHHHHHHh-h-ccCccCCHHHHHHHHHHHHHHHHhCC
Confidence            789999999999987777765     3567799999999999999999999 7 47899999999999999999999999


Q ss_pred             cccccccCCCCCeEEEEecCCcccccccCCCccC--CCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCCceEEEEEe
Q 029904           94 TATVSNWDADGTCCSIILEDNPLVDFVELPDTCQ--GLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKL  171 (185)
Q Consensus        94 ~ad~l~~t~~~~~y~L~~d~npl~~fvslP~~~~--~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~l~g~~~t~~~Ikf  171 (185)
                      |+|+|+ |||+++|+|+.+++|+.+|+++|+++.  .++|++|+||||||||+++||+|+|++....+   |.++|.||+
T Consensus        82 ~~d~L~-t~~~~~y~l~dn~~~l~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~lg~~~~Vta~~~~~---p~~~f~i~~  157 (160)
T 2c0j_B           82 QMDSLR-TNHQGTYVLQDNSFPLLLPMASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVAAL---PVCKFQVVI  157 (160)
T ss_dssp             CCSEEE-ECSSSEEEEEETTCGGGC----CGGGTTTGGGGTHHHHHHHHHHHHHTTCCCEEEEEESST---TCEEEEEEC
T ss_pred             cCccce-eCCCCEEEEECCCCcHHHHcCCCHHHhhhcchhHHHHHHHHHHHHHHCCCceEEEEeecCC---CceEEEEEe
Confidence            999999 899999999944456899999999987  89999999999999999999999999877654   679999999


Q ss_pred             cc
Q 029904          172 LK  173 (185)
Q Consensus       172 ~~  173 (185)
                      .+
T Consensus       158 ~~  159 (160)
T 2c0j_B          158 PK  159 (160)
T ss_dssp             CC
T ss_pred             ec
Confidence            76

>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-49  Score=336.27  Aligned_cols=165  Identities=15%  Similarity=0.184  Sum_probs=140.0

Q ss_pred             chhhhhccch-hhhHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhHHHHHHHHHHhhcC-------------------
Q 029904            9 GDAIFANVER-NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSN-------------------   68 (185)
Q Consensus         9 g~~~~~~~~~-s~~~f~ll~~elV~q~~~~~~~~~ev~~~Le~mGy~IG~RL~E~~~~r~~-------------------   68 (185)
                      .+++-.|+.+ |+|+|+|||+|||+|+.++.++.++++++|++|||+||.||+|++++|+.                   
T Consensus        47 ~~~l~~~~~~Vs~s~fafLf~EmV~~~~~~~~~~~e~e~rLe~mGy~IG~RLlE~l~~R~~~~~~~~~~~~~~~~s~~ss  126 (283)
T 3cue_B           47 SESLLFKRQEASLSAMAFLFQEMISQLHRTCKTAGDFETKLSDYGHNIGIRLLELLNFRASVSPSSLPRASAFLSQNESS  126 (283)
T ss_dssp             --------CEEEHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHCC-----------------------
T ss_pred             ccccccCcchhhHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhhhHHHHHHHHhhcccCccccccccccccccccc
Confidence            3444334455 99999999999997777777799999999999999999999999988863                   


Q ss_pred             -------------------------------------------CCCCCCHHHHHHHHHHhhhhhhcCcccccc-ccCCCC
Q 029904           69 -------------------------------------------VTRCVDFRETAEVIAKVGFKMFLGVTATVS-NWDADG  104 (185)
Q Consensus        69 -------------------------------------------~~R~~~~ld~l~fI~k~~Wk~~fgk~ad~l-~~t~~~  104 (185)
                                                                 .+||.+++|+++||||++||++||||+|+| +|++++
T Consensus       127 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~la~r~t~~~~R~~d~ldilkFIcK~~Wk~lFgKqaD~Lektn~~~  206 (283)
T 3cue_B          127 SKLSNASNSPGMLANSSTATSASANERLQEKQTESLSNYITKMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVKSSERD  206 (283)
T ss_dssp             --------------------------------------CCCCCSSSCCCHHHHHHHHHHHHHHHTTSSCCSEEEECSSCS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhCCCcchhccccCCC
Confidence                                                       389999999999999999999999999999 655677


Q ss_pred             CeEEEEecCCcccccccCCCccCCCcchhhhhHHHHHHhhcCCceEEEEEeecccC-CCCceEEEEEecccccc
Q 029904          105 TCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLR-GDDAYELQVKLLKQVPE  177 (185)
Q Consensus       105 ~~y~L~~d~npl~~fvslP~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~l~-g~~~t~~~Ikf~~~~~~  177 (185)
                      ++|||+.+++||++|++++    .++|++|+||||||||+++||+|+|+++.+++. ++++|+|+|||+++|.+
T Consensus       207 geYvL~Dn~~pLt~fVs~~----~L~y~af~cGIIRGAL~~lGf~a~VTA~~~p~~~~~~~T~~~IkF~~~v~~  276 (283)
T 3cue_B          207 NEYMIVDNFPTLTQFIPGE----NVSCEYFVCGIIKGFLFNAGFPCGVTAHRMPQGGHSQRTVYLIQFDRQVLD  276 (283)
T ss_dssp             SCEEEEESSCSSSCSSCTT----CCHHHHHHHHHHHHHHHHHTSCCCCEEECCCCSSCTTCEEEECCCCHHHHH
T ss_pred             CEEEEEeCchHHHhhhccC----CcchhhhHHHHHHHHHHhCCCceEEEEEEcccccCCCceEEEEEecHHHHh
Confidence            9999997777889999974    689999999999999999999998888888876 67799999999999865

>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C*

Probab=100.00  E-value=3.4e-48  Score=308.88  Aligned_cols=149  Identities=21%  Similarity=0.241  Sum_probs=121.5

Q ss_pred             hhhHHHHHHHHHHHHHHhccccH----HHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhhhcCcc
Q 029904           19 NAELFTLTYGATVRQLLTDLEEV----EEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVT   94 (185)
Q Consensus        19 s~~~f~ll~~elV~q~~~~~~~~----~ev~~~Le~mGy~IG~RL~E~~~~r~~~~R~~~~ld~l~fI~k~~Wk~~fgk~   94 (185)
                      |.|+|+|||+|||+|++++.++.    ++++++|++|||+||.||+|+++ |+ .+||++++|+++||||++|+++||||
T Consensus         5 s~~~f~~l~~ElV~~~~~~~~~~~~~~~~v~~~Le~mGy~iG~rLiE~~~-r~-~~r~~~~ld~lkfI~k~~Wk~~fgk~   82 (160)
T 2bjn_A            5 DEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFT-KD-TARFKDELDIMKFICKDFWTTVFKKQ   82 (160)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCTTTTTTTHHHHHHHHHHHHHHHHHHTTC-----------CHHHHHHHHTHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhhHhhHHHHHHHH-hc-cCccCCHHHHHHHHHHHHHHHHhCCC
Confidence            88999999999998888876643    37899999999999999999999 74 79999999999999999999999999


Q ss_pred             ccccccCCCCCeEEEEecCCcccccccCCCccC--CCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCCceEEEEEec
Q 029904           95 ATVSNWDADGTCCSIILEDNPLVDFVELPDTCQ--GLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLL  172 (185)
Q Consensus        95 ad~l~~t~~~~~y~L~~d~npl~~fvslP~~~~--~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~l~g~~~t~~~Ikf~  172 (185)
                      +|+|+ |||+++|+|+.+++|+.+|+++|+++.  .++|++|+||||||||+++||+|+|+++...+   |.+.|.|++.
T Consensus        83 ~d~L~-t~~~~~y~l~d~~~~~~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vta~~~~~---p~~~F~i~~~  158 (160)
T 2bjn_A           83 IDNLR-TNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSM---PACKFQVMIQ  158 (160)
T ss_dssp             CSEEE-EEETTEEEEEESSCGGGTTC-------CTTGGGTHHHHHHHHHHHHHTTCCEEEEEEESST---TCEEEEEEEC
T ss_pred             Ccccc-cCCCCEEEEEcCCchHHhhcCCCHHHHHhcchhHHHHHHHHHHHHHHCCCceEEEEEecCC---CceEEEEEec
Confidence            99998 899999999955567899999999874  79999999999999999999999999987654   6899999987


Q ss_pred             c
Q 029904          173 K  173 (185)
Q Consensus       173 ~  173 (185)
                      +
T Consensus       159 ~  159 (160)
T 2bjn_A          159 K  159 (160)
T ss_dssp             -
T ss_pred             c
Confidence            5

>2oso_A Hypothetical protein MJ1460; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} SCOP: d.278.1.3 PDB: 2osd_A*

Probab=96.45  E-value=0.015  Score=45.32  Aligned_cols=129  Identities=19%  Similarity=0.171  Sum_probs=82.2

Q ss_pred             hhhHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhh-hcCc-ccc
Q 029904           19 NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKM-FLGV-TAT   96 (185)
Q Consensus        19 s~~~f~ll~~elV~q~~~~~~~~~ev~~~Le~mGy~IG~RL~E~~~~r~~~~R~~~~ld~l~fI~k~~Wk~-~fgk-~ad   96 (185)
                      ..+.|.+++-.+-..|.....+..     |.++|+..|..+++.+           +..+     +++|+. -+|. .++
T Consensus        29 p~~~f~~l~~~l~~~l~~~G~~~~-----L~~~G~~~G~~l~~~~-----------~~~l-----~~~~~~~G~G~l~i~   87 (163)
T 2oso_A           29 PMPYFGLFALVIFDKVKELGSETS-----LYEIGEEFGKMLSPKN-----------IEEL-----KKIFKLMNFGDLEID   87 (163)
T ss_dssp             CHHHHHHHHHHHHHHHC--CCCCC-----HHHHHHHHHHHHCCSS-----------HHHH-----HHHHHHHTCCEEECC
T ss_pred             cHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHHHHHHHHHHHH-----------HHHH-----HHHHHHcCceEEEEE
Confidence            788899888877754533222222     9999999999886531           1122     345543 2332 122


Q ss_pred             ccccCCCCCeEEEEecCCcccccccCCCccCCCcchhhhhHHHHHHhhcC-CceEEEEEeecccCCCCceEEEEEeccc
Q 029904           97 VSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMV-SMKTEVTWIRDVLRGDDAYELQVKLLKQ  174 (185)
Q Consensus        97 ~l~~t~~~~~y~L~~d~npl~~fvslP~~~~~l~y~~~~cGiIrGaL~~l-g~~~~v~~~~d~l~g~~~t~~~Ikf~~~  174 (185)
                      ......+.+.+.+...++|...-   |   .+-.-++|.+|++.|+++.+ |=++.|.=++....|++.+.|.++..+.
T Consensus        88 ~~~~~~~~~~~~i~v~~s~e~~~---~---~~~pvC~~~~G~~aG~~s~~~g~~~~~~E~~C~a~G~~~C~F~~~~~~~  160 (163)
T 2oso_A           88 ENKILLKNPPYKIKLSNPPYQWV---S---KEEPIHDFIAGILAGCLEEIFYYYFVVNEVECVSQGKDKCVFEVKEVDE  160 (163)
T ss_dssp             HHHHHHSCSCEEEEEESCSCTTC---C---CSSCCCHHHHHHHHHHHHHHHCSEEEEEEEECGGGTCSSEEEEEEEEC-
T ss_pred             eccccccCCcEEEEEEeCceeec---C---CCCceeHHHHHHHHHHHHHHhCCCeEEEEeEeEcCCCCeEEEEEEEHHH
Confidence            11000233557777677776532   2   23456788899999998874 6678888899999999999999998764

>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*

Probab=95.18  E-value=0.3  Score=38.31  Aligned_cols=125  Identities=13%  Similarity=0.105  Sum_probs=79.4

Q ss_pred             HHHHHHhccc-cHHHHHHHHHHhhhhHHHHHHHH---HHhhcCCCCCCCHHHHHHH-HHHhhhhhhcCcccccccc-CCC
Q 029904           30 TVRQLLTDLE-EVEEVNKQLDQMGYNIGIRLIDE---FLAKSNVTRCVDFRETAEV-IAKVGFKMFLGVTATVSNW-DAD  103 (185)
Q Consensus        30 lV~q~~~~~~-~~~ev~~~Le~mGy~IG~RL~E~---~~~r~~~~R~~~~ld~l~f-I~k~~Wk~~fgk~ad~l~~-t~~  103 (185)
                      ||..+++... +.+   +-|+.+|...=..+.+.   ++ | ...-..+++.-+.- |+..+=+.+-+-.+-..+. ..+
T Consensus        50 lv~a~s~~~g~~~~---~ll~~fG~~~~~~~~~~y~~~l-~-~g~~~~dFL~~ld~~lH~~v~~~yp~~~~Psf~~~~~~  124 (181)
T 2kii_A           50 IVQDVAQRLNMPIQ---DVVKAFGQFLFNGLASRHTDVV-D-KFDDFTSLVMGIHDVIHLEVNKLYHEPSLPHINGQLLP  124 (181)
T ss_dssp             HHHHHHHHTTCCHH---HHHHHHHHHHHHHHHHHHHHHH-G-GGSSHHHHHTTTTTTHHHHHHHHSSCSCCCEEEEEECS
T ss_pred             HHHHHHHHHCcCHH---HHHHHHHHHHHHHHHHHhHHHH-h-cCCCHHHHHHHHhHHHHHHHHHhCCCCCCCeeEEEECC
Confidence            4444444443 433   56777787664333333   22 1 12334455555554 7777777777766666543 234


Q ss_pred             CCeEEEEecCCcccccccCCCccCCCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCCceEEEEEecc
Q 029904          104 GTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLK  173 (185)
Q Consensus       104 ~~~y~L~~d~npl~~fvslP~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~l~g~~~t~~~Ikf~~  173 (185)
                      ++...|++.        |     ... +..++.|+|+|+-+.+|-++++...+...+|.+...|.|++.+
T Consensus       125 ~~~l~l~Y~--------S-----~R~-l~~~~~Gli~~~A~~f~~~v~i~~~~~~~~~~~h~~f~i~~~~  180 (181)
T 2kii_A          125 NNQIALRYS--------S-----PRR-LCFCAEGLLFGAAQHFQQKIQISHDTCMHTGADHCMLIIELQN  180 (181)
T ss_dssp             SSEEEEEEE--------C-----TTC-CHHHHHHHHHHHHHHTTCCEEEEEEECGGGTCSSEEEEEEECC
T ss_pred             CCEEEEEEe--------c-----CCC-hHHHHHHHHHHHHHHhCCCeEEEEEeeccCCCCEEEEEEEecC
Confidence            556665522        2     122 8889999999999999999999877666668889999999864

>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A* 3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A* 3tf9_A* 3tfa_A*

Probab=95.00  E-value=0.3  Score=38.58  Aligned_cols=92  Identities=13%  Similarity=0.074  Sum_probs=66.0

Q ss_pred             CCCCCHHHHHHHHHHhhhhhhcCcccccccc-CCCCCeEEEEecCCcccccccCCCccCCCcchhhhhHHHHHHhhcCCc
Q 029904           70 TRCVDFRETAEVIAKVGFKMFLGVTATVSNW-DADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSM  148 (185)
Q Consensus        70 ~R~~~~ld~l~fI~k~~Wk~~fgk~ad~l~~-t~~~~~y~L~~d~npl~~fvslP~~~~~l~y~~~~cGiIrGaL~~lg~  148 (185)
                      .-..+++..+.-|+..+=+.+-+-.+-..+. ..+.+...|++        -|     ...-++.++.|+|+|+-+..|-
T Consensus        92 ~~l~dFL~~ld~lH~~v~~~yp~~~~Psf~~~~~~~~~l~l~Y--------~S-----~R~gl~~~~~Gli~~~A~~f~~  158 (189)
T 3tfg_A           92 DSLPEFMENLDNLHARVGLSFPQLRPPAFECQHTSSKSMELHY--------QS-----TRCGLAPMVLGLLHGLGKRFQT  158 (189)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHSTTCCCCEEEEEEEETTEEEEEE--------EC-----SSSSCHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHhHHHHHHHHHHhCCCCCCCeEEEEECCCCEEEEEE--------EC-----CCCCHHHHHHHHHHHHHHHhCC
Confidence            3467888888888888888776666555532 12234555442        22     1223788999999999999998


Q ss_pred             eEEEEEeecccCCCCceEEEEEeccc
Q 029904          149 KTEVTWIRDVLRGDDAYELQVKLLKQ  174 (185)
Q Consensus       149 ~~~v~~~~d~l~g~~~t~~~Ikf~~~  174 (185)
                      ++++...+..-.+.+.+.|.|++.+.
T Consensus       159 ~v~i~~~~~~~~~~~h~~f~i~~~~~  184 (189)
T 3tfg_A          159 KVEVTQTAFRETGEDHDIFSIKYEDS  184 (189)
T ss_dssp             EEEEEEEECTTTTSSSEEEEEEEEC-
T ss_pred             CeEEEEEeccCCCCCeEEEEEEECCC
Confidence            99998888776777899999998764

>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein, signaling protein; HET: HEM; 1.67A {Caldanaerobacter subterraneus} SCOP: d.278.1.1 PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A* 3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A* 3lah_A* 3lai_A*

Probab=92.57  E-value=0.85  Score=36.00  Aligned_cols=129  Identities=13%  Similarity=0.090  Sum_probs=79.5

Q ss_pred             HHHHHHhccc-cHHHHHHHHHHhhhhHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHhhhhhhcCccccccccC-CCCCe
Q 029904           30 TVRQLLTDLE-EVEEVNKQLDQMGYNIGIRLIDEFLAKS-NVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWD-ADGTC  106 (185)
Q Consensus        30 lV~q~~~~~~-~~~ev~~~Le~mGy~IG~RL~E~~~~r~-~~~R~~~~ld~l~fI~k~~Wk~~fgk~ad~l~~t-~~~~~  106 (185)
                      ||..+++... +.+   +-|+.+|...=..+.+.+- +- ..+-..+++.-+.-|+..+=+.+-+-.+-..+.+ .++++
T Consensus        51 lv~a~s~~~g~~~~---~ll~~fG~~~~~~~~~~y~-~~l~g~~~~dFL~~ld~lH~~v~~~yp~~~~Psf~~~~~~~~~  126 (188)
T 3sj5_A           51 IFAKVSEKTGKNVN---EIWREVGRQNIKTFSEWFP-SYFAGRRLVNFLMMMDEVHLQLTKMIKGATPPRLIAKPVAKDA  126 (188)
T ss_dssp             HHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHHCG-GGTTTCCHHHHHHTHHHHHHHTTTTSTTCCCCEEEEEEEETTE
T ss_pred             HHHHHHHHHCcCHH---HHHHHHHHHHHHHHHHhHH-HHhCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCE
Confidence            4444444433 443   4677777666444444321 10 1234556677777777777776666666555421 23455


Q ss_pred             EEEEecCCcccccccCCCccCCCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCC-ceEEEEEeccccc
Q 029904          107 CSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDD-AYELQVKLLKQVP  176 (185)
Q Consensus       107 y~L~~d~npl~~fvslP~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~l~g~~-~t~~~Ikf~~~~~  176 (185)
                      ..|++        -|     .. -++.++.|+|+||-+-.|-++++.-++....++. ..+|+|+|+....
T Consensus       127 l~l~Y--------~S-----~R-gl~~~~~Gli~~aa~~f~~~v~i~~~~~~~~~~~~~~~~rl~f~~~~~  183 (188)
T 3sj5_A          127 IEMEY--------VS-----KR-KMYDYFLGLIEGSSKFFKEEISVEEVERGEKDGFSRLKVRIKFKNPVF  183 (188)
T ss_dssp             EEEEE--------EE-----TT-CCHHHHHHHHHHHHHHHTCCEEEEEEEEEEETTEEEEEEEEEESSCCS
T ss_pred             EEEEE--------EC-----CC-CHHHHHHHHHHHHHHHhCCCeEEEEecccCCCCceEEEEEEEeeChhh
Confidence            55542        22     23 6789999999999999999998877665433333 7799999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	185
d1wc9a_	161	d.278.1.2 (A:) Trafficking protein particle comple	2e-70
d2j3wb1	168	d.278.1.2 (B:21-188) TRAPPC5, similar to trafficki	5e-41

>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit 3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: Trafficking protein particle complex subunit 3, Bet3 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  208 bits (532), Expect = 2e-70
 Identities = 93/157 (59%), Positives = 123/157 (78%)

Query: 19  NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 78
           ++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRET
Sbjct: 4   SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 63

Query: 79  AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 138
           A+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV
Sbjct: 64  ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 123

Query: 139 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQV 175
           +RGALEMV M  E  +++D L+GD   E++++ ++++
Sbjct: 124 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRI 160

>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking protein particle complex 5 {Zebrafish (Brachydanio rerio) [TaxId: 7955]} Length = 168

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: TRAPPC5, similar to trafficking protein particle complex 5
species: Zebrafish (Brachydanio rerio) [TaxId: 7955]

 Score =  134 bits (338), Expect = 5e-41
 Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 2/139 (1%)

Query: 17  ERNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNV-TRCVDF 75
           E +   F L +   V+   + +  V E+  +L  MG  +G  L+D  + +     R    
Sbjct: 3   EVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKV 62

Query: 76  RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLV-DFVELPDTCQGLYYCNI 134
                 I    +K   G  A       D      I+E  PL+  ++ +P     L     
Sbjct: 63  LNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAF 122

Query: 135 LSGVIRGALEMVSMKTEVT 153
             G++   L       +VT
Sbjct: 123 TGGIVEAILTHSGFPAKVT 141

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	185
d1wc9a_	161	Trafficking protein particle complex subunit 3, Be	100.0
d2j3wb1	168	TRAPPC5, similar to trafficking protein particle c	100.0
d2osoa1	152	Hypothetical protein MJ1460 {Methanococcus jannasc	96.32
d1u55a_	188	Methyl-accepting chemotaxis protein {Thermoanaerob	95.9

>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit 3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: Trafficking protein particle complex subunit 3, Bet3 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-58  Score=367.91  Aligned_cols=160  Identities=58%  Similarity=1.014  Sum_probs=153.0

Q ss_pred             ch-hhhHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhhhcCccc
Q 029904           17 ER-NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTA   95 (185)
Q Consensus        17 ~~-s~~~f~ll~~elV~q~~~~~~~~~ev~~~Le~mGy~IG~RL~E~~~~r~~~~R~~~~ld~l~fI~k~~Wk~~fgk~a   95 (185)
                      +| |+|+|+|||||||+|++++.++.++++++|++|||+||.||+|++++|++.+||.+++++++||||++||++|||++
T Consensus         1 ~kv~~elfal~yg~iV~~~~~d~e~~~e~~~~Le~~G~~IG~RLiE~~~~r~~~~R~~~~l~~l~fI~~~~wk~~fgk~~   80 (161)
T d1wc9a_           1 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITP   80 (161)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSCCCHHHHHHHHHHTHHHHHHSCCC
T ss_pred             CcccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhCcchhHHHHHHHHhhcCCCccccHHHHHHHHHHHHHHHHcCCCc
Confidence            35 99999999999999999999999999999999999999999999999988999999999999999999999999999


Q ss_pred             cccccCCCCCeEEEEecCCcccccccCCCccCCCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCCceEEEEEecccc
Q 029904           96 TVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQV  175 (185)
Q Consensus        96 d~l~~t~~~~~y~L~~d~npl~~fvslP~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~l~g~~~t~~~Ikf~~~~  175 (185)
                      |+++|++++..|++++++||+++|+++|+++++++|++|+||||||||+++||+|+|+|++|+++||+.|+|+|||.+++
T Consensus        81 d~l~~~~~~~~~~~i~~~npl~~fv~lP~~~~~l~y~~f~cGiIrGaL~~~g~~~~V~~~~d~l~gd~~~~i~v~~~~~~  160 (161)
T d1wc9a_          81 SITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRI  160 (161)
T ss_dssp             EEECCCTTSCEEEEEESCCGGGTTCCCCTTCTTCCTTTHHHHHHHHHHHTTTEEEEEEEEECGGGTCSSEEEEEEEEEEC
T ss_pred             ccceecCCCCeEEEEecCCCccceEEcCcccCCceehhhHHHHHHHHHHHCCCeEEEEEEecccCCCCceEEEEEEeeec
Confidence            99997666677888999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             c
Q 029904          176 P  176 (185)
Q Consensus       176 ~  176 (185)
                      +
T Consensus       161 ~  161 (161)
T d1wc9a_         161 E  161 (161)
T ss_dssp             -
T ss_pred             C
Confidence            4

>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking protein particle complex 5 {Zebrafish (Brachydanio rerio) [TaxId: 7955]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: TRAPPC5, similar to trafficking protein particle complex 5
species: Zebrafish (Brachydanio rerio) [TaxId: 7955]

Probab=100.00  E-value=1.5e-50  Score=322.81  Aligned_cols=157  Identities=19%  Similarity=0.269  Sum_probs=139.8

Q ss_pred             cchhhhHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHhhhhhhcCcc
Q 029904           16 VERNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKS-NVTRCVDFRETAEVIAKVGFKMFLGVT   94 (185)
Q Consensus        16 ~~~s~~~f~ll~~elV~q~~~~~~~~~ev~~~Le~mGy~IG~RL~E~~~~r~-~~~R~~~~ld~l~fI~k~~Wk~~fgk~   94 (185)
                      ++.|+|+|+|||+|||++..++.++.++++++|++|||+||.||+|++++|+ ..+||++++++++||||++|+++||||
T Consensus         2 ~~Vs~s~f~~L~~ElV~y~~~~~~~~~e~~~~Le~mG~~vG~rl~E~l~~r~~~~~R~~~~~~~l~fI~k~~W~~lfgk~   81 (168)
T d2j3wb1           2 TEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGKE   81 (168)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHHHHHHHHHTHHHHHHHSSC
T ss_pred             chhCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHHcCcC
Confidence            3449999999999999444444559999999999999999999999999987 568999999999999999999999999


Q ss_pred             cccccc-CCCCCeEEEEecCCcccccccCCCccCCCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCCceEEEEEecc
Q 029904           95 ATVSNW-DADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLK  173 (185)
Q Consensus        95 ad~l~~-t~~~~~y~L~~d~npl~~fvslP~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~l~g~~~t~~~Ikf~~  173 (185)
                      +|+|++ ++|+++|+|+.+++|++.|+++|+++++++|++|+||||||||+++||+|+|+...     +++|+|+|||++
T Consensus        82 ~d~L~~~~~~~~~y~I~d~~~~~~~~vs~p~~~~~l~y~~f~~GiIrGaL~~~g~~~~Vta~~-----~~~~~f~ikf~~  156 (168)
T d2j3wb1          82 ADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHW-----HKGTTLMIKFDE  156 (168)
T ss_dssp             CSEEEEETTEEEEEEEEESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEEEEEEE-----SSSEEEEEEECH
T ss_pred             cccccccCCCCceEEEEcCCchhhheeccCccccccchHHHHHHHHHHHHHHCCCceEEEEee-----CCCeEEEEEccH
Confidence            999974 66889999995556689999999999999999999999999999999988776654     368999999999


Q ss_pred             cccc
Q 029904          174 QVPE  177 (185)
Q Consensus       174 ~~~~  177 (185)
                      +|.+
T Consensus       157 ~v~~  160 (168)
T d2j3wb1         157 SVIA  160 (168)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9875

>d2osoa1 d.278.1.3 (A:5-156) Hypothetical protein MJ1460 {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: MJ1460-like
domain: Hypothetical protein MJ1460
species: Methanococcus jannaschii [TaxId: 2190]

Probab=96.32  E-value=0.012  Score=43.53  Aligned_cols=131  Identities=16%  Similarity=0.192  Sum_probs=80.3

Q ss_pred             ccch-hhhHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhhhcCc
Q 029904           15 NVER-NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGV   93 (185)
Q Consensus        15 ~~~~-s~~~f~ll~~elV~q~~~~~~~~~ev~~~Le~mGy~IG~RL~E~~~~r~~~~R~~~~ld~l~fI~k~~Wk~~fgk   93 (185)
                      ..+. .++.|.++..+|...+. +    .+...-|...||++|.++.++           ...++.+|..+.-|=.+   
T Consensus        19 ~~~~ip~~~f~l~~~~l~d~l~-~----~~~~~iLY~aGk~lGr~~~~k-----------~~eel~~ff~~~g~G~L---   79 (152)
T d2osoa1          19 ESKKIPMPYFGLFALVIFDKVK-E----LGSETSLYEIGEEFGKMLSPK-----------NIEELKKIFKLMNFGDL---   79 (152)
T ss_dssp             HSCCCCHHHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHCCS-----------SHHHHHHHHHHHTCCEE---
T ss_pred             HHhcCCHHHHHHHHHHHHHHhc-c----cchHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHcCCceE---
Confidence            3444 88889998887774442 1    112345778899988877642           35567777766666422   


Q ss_pred             cccccccCCCCCeEEEEecCCcccccccCCCccCCCcchhhhhHHHHHHhhcC-CceEEEEEeecccCCCCceEEEEE
Q 029904           94 TATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMV-SMKTEVTWIRDVLRGDDAYELQVK  170 (185)
Q Consensus        94 ~ad~l~~t~~~~~y~L~~d~npl~~fvslP~~~~~l~y~~~~cGiIrGaL~~l-g~~~~v~~~~d~l~g~~~t~~~Ik  170 (185)
                      .++..+.....+...+...+.|+..-  .+   +.. -+++.+|++.|+++.+ |-++.|.=+.....|++.+.|.|+
T Consensus        80 ~I~~~~~~~~~~~~~~e~~~~~~~~g--~~---~~p-vC~~~~G~lag~~~~~~g~~~~v~E~~C~a~G~~~C~F~v~  151 (152)
T d2osoa1          80 EIDENKILLKNPPYKIKLSNPPYQWV--SK---EEP-IHDFIAGILAGCLEEIFYYYFVVNEVECVSQGKDKCVFEVK  151 (152)
T ss_dssp             ECCHHHHHHSCSCEEEEEESCSCTTC--CC---SSC-CCHHHHHHHHHHHHHHHCSEEEEEEEECGGGTCSSEEEEEE
T ss_pred             EEEecccccccceEEEEEccChhhhC--CC---CCC-cchhhHHHHHHHHHHHhCCceEEEEeehhhCCCCceEEEEe
Confidence            12221111122334444344444321  11   122 4578899999999875 567888888999999999999986

>d1u55a_ d.278.1.1 (A:) Methyl-accepting chemotaxis protein {Thermoanaerobacter tengcongensis [TaxId: 119072]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: H-NOX domain
domain: Methyl-accepting chemotaxis protein
species: Thermoanaerobacter tengcongensis [TaxId: 119072]

Probab=95.90  E-value=0.014  Score=44.63  Aligned_cols=118  Identities=15%  Similarity=0.117  Sum_probs=80.8

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhhhcCcccccccc-CCCCCeEEEEecCCcccccccCC
Q 029904           45 NKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNW-DADGTCCSIILEDNPLVDFVELP  123 (185)
Q Consensus        45 ~~~Le~mGy~IG~RL~E~~~~r~~~~R~~~~ld~l~fI~k~~Wk~~fgk~ad~l~~-t~~~~~y~L~~d~npl~~fvslP  123 (185)
                      ++-|+..|...=.++.+.+..--....+.+++.-+..|+..+=+.+-+-.+-..+. ..+.+++.|+        |.|  
T Consensus        64 ~~ll~~fG~~~~~~~~~~y~~~~~g~~~~dFL~~ld~iH~~v~~~yp~~~~P~f~~~~~~~~~l~l~--------Y~S--  133 (188)
T d1u55a_          64 NEIWREVGRQNIKTFSEWFPSYFAGRRLVNFLMMMDEVHLQLTKMIKGATPPRLIAKPVAKDAIEME--------YVS--  133 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHSGGGTTTCCHHHHHHHHHHHHHHHHTTSTTCCCCBCCEEEEETTEEEEE--------EEE--
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHhcCCCHHHHHHhhhhHHHHHHHhCCCCCCCeEEEEECCCCEEEEE--------EEe--
Confidence            45788888776556666442111234677888889999998888777766655542 2234555554        333  


Q ss_pred             CccCCCcchhhhhHHHHHHhhcCCceEEEEEee-cccCCCCceEEEEEeccccc
Q 029904          124 DTCQGLYYCNILSGVIRGALEMVSMKTEVTWIR-DVLRGDDAYELQVKLLKQVP  176 (185)
Q Consensus       124 ~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~-d~l~g~~~t~~~Ikf~~~~~  176 (185)
                        .+  ....++.|+|+|+-+..|-++++..++ ....|....+|+|+|++.+-
T Consensus       134 --~R--~l~~~~~Gli~g~A~~f~~~i~I~~~~~~~~~~~~~~~~~i~f~n~~~  183 (188)
T d1u55a_         134 --KR--KMYDYFLGLIEGSSKFFKEEISVEEVERGEKDGFSRLKVRIKFKNPVF  183 (188)
T ss_dssp             --TT--CCHHHHHHHHHHHHHHHTCCEEEEEEEEEEETTEEEEEEEEEESSCCC
T ss_pred             --CC--ChHHHHHHHHHHHHHHhCCceEEEEeeccccCCccEEEEEEEEEchhh
Confidence              12  356899999999999999998888765 44456678999999987654