Citrus Sinensis ID: 029920

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
Protein Sequence
MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIYLLD
Secondary Structure (PSIPRED)
cccHHHHHHHcccccEEEEEEEEcccccHHHHHHHHHccccccccccccEEEEEEEEccEEEEEEEccccccccccHHHHcccccEEEEEEEcccccHHHHHHHHHHHHHccccccccEEEEEEccccccccccHHHHHHHcccccccccccEEEEEccccccccHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHccccccccccccccEEEEEccEccEEEEEEEEcccHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHHHHccHHHcccEEEEEEEcccccccccHHHHHHHccHHHccccccEEEEEcEccccEcHHHHHHHHHHHHHHcEEEcc
Coil and Loop (DISEMBL)
MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINgedtsvisptlgfniktVTYQKYTlniwdvggQRTIRSYWRNYFEQTDGLVwvvdssdlrrldDCKMELDNLLKEERLSGASLLILANKqdingaltPTEIAKVLNLEamdktrhwkivgcsaytgeglleGFDWLVQDIASRIYLLD
Flexible Loop (DISEMBL)
MGLLSIIRKIKKKEKEMRILmvgldnsgktTIVLKINgedtsvisptlgfnikTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIYLLD
Low Complexity Region (SEG)
MGLLSiirkikkkekemriLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIYLLD
Disordered region (IsUnstruct)
*****IIRKI****KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIYLL*
Disordered Region (DISOPRED)
MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIYLL*
Disordered Region (DISEMBL)
MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIYLLD
Disordered Region (DISPRO)
MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIYLL*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIYLLD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	185	2.2.26 [Sep-21-2011]
Q9ZPX1	185	Probable ADP-ribosylation	yes	no	1.0	1.0	0.940	4e-91
Q2TA37	184	ADP-ribosylation factor-l	yes	no	0.994	1.0	0.627	9e-67
P36404	184	ADP-ribosylation factor-l	yes	no	0.994	1.0	0.627	4e-66
Q9D0J4	184	ADP-ribosylation factor-l	yes	no	0.994	1.0	0.616	4e-66
O08697	184	ADP-ribosylation factor-l	yes	no	0.994	1.0	0.610	2e-65
Q06849	184	ADP-ribosylation factor-l	yes	no	0.994	1.0	0.610	6e-64
Q627K4	184	ADP-ribosylation factor-l	N/A	no	0.994	1.0	0.578	7e-60
Q54UF1	184	ADP-ribosylation factor-l	yes	no	0.994	1.0	0.632	1e-58
Q19705	184	ADP-ribosylation factor-l	yes	no	0.994	1.0	0.556	1e-57
B5FYQ0	182	ADP-ribosylation factor-l	yes	no	0.967	0.983	0.513	6e-50

>sp|Q9ZPX1|ARF5_ARATH Probable ADP-ribosylation factor At2g18390 OS=Arabidopsis thaliana GN=At2g18390 PE=2 SV=1

 Score =  333 bits (854), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 174/185 (94%), Positives = 181/185 (97%)

Query: 1   MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
           MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT+ YQKY
Sbjct: 1   MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTIIYQKY 60

Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
           TLNIWDVGGQ+TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERL+G+SL
Sbjct: 61  TLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLAGSSL 120

Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           LILANKQDI GALTP EI KVLNLE+MDK+RHWKIVGCSAYTGEGLLEGFDWLVQDIASR
Sbjct: 121 LILANKQDIQGALTPDEIGKVLNLESMDKSRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180

Query: 181 IYLLD 185
           IY+LD
Sbjct: 181 IYMLD 185

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.
Arabidopsis thaliana (taxid: 3702)

>sp|Q2TA37|ARL2_BOVIN ADP-ribosylation factor-like protein 2 OS=Bos taurus GN=ARL2 PE=1 SV=1

 Score =  252 bits (644), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 116/185 (62%), Positives = 153/185 (82%), Gaps = 1/185 (0%)

Query: 1   MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
           MGLL+I++K+K+KE+E+R+LM+GLDN+GKTTI+ K NGED   ISPTLGFNIKT+ ++ +
Sbjct: 1   MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF 60

Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
            LNIWDVGGQ+++RSYWRNYFE TDGL+WVVDS+D +R+ DC+ EL NLL EERL+GA+L
Sbjct: 61  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQNLLVEERLAGATL 120

Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           LI ANKQD+ GAL+   I + L L+++ ++ HW I GCSA TGE LL G DWL+ DI+SR
Sbjct: 121 LIFANKQDLPGALSSNAIREALELDSI-RSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 179

Query: 181 IYLLD 185
           I++ D
Sbjct: 180 IFMAD 184

Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). GTP-binding protein that does not act as an allosteric activator of the cholera toxin catalytic subunit. Regulates formation of new microtubules and centrosome integrity. Prevents the TBCD-induced microtubule destruction. Participates in association with TBCD, in the disassembly of the apical junction complexes. Antagonizes the effect of TBCD on epithelial cell detachment and tight and adherens junctions disassembly. Together with ARL2, plays a role in the nuclear translocation, retention and transcriptional activity of STAT3. Component of a regulated secretory pathway involved in Ca(2+)-dependent release of acetylcholine. Required for normal progress through the cell cycle.

Bos taurus (taxid: 9913)

>sp|P36404|ARL2_HUMAN ADP-ribosylation factor-like protein 2 OS=Homo sapiens GN=ARL2 PE=1 SV=4

 Score =  250 bits (638), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 116/185 (62%), Positives = 153/185 (82%), Gaps = 1/185 (0%)

Query: 1   MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
           MGLL+I++K+K+KE+E+R+LM+GLDN+GKTTI+ K NGED   ISPTLGFNIKT+ ++ +
Sbjct: 1   MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF 60

Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
            LNIWDVGGQ+++RSYWRNYFE TDGL+WVVDS+D +R+ DC+ EL +LL EERL+GA+L
Sbjct: 61  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 120

Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           LI ANKQD+ GAL+   I +VL L+++ ++ HW I GCSA TGE LL G DWL+ DI+SR
Sbjct: 121 LIFANKQDLPGALSSNAIREVLELDSI-RSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 179

Query: 181 IYLLD 185
           I+  D
Sbjct: 180 IFTAD 184

Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). GTP-binding protein that does not act as an allosteric activator of the cholera toxin catalytic subunit. Regulates formation of new microtubules and centrosome integrity. Prevents the TBCD-induced microtubule destruction. Participates in association with TBCD, in the disassembly of the apical junction complexes. Antagonizes the effect of TBCD on epithelial cell detachment and tight and adherens junctions disassembly. Together with ARL2, plays a role in the nuclear translocation, retention and transcriptional activity of STAT3. Component of a regulated secretory pathway involved in Ca(2+)-dependent release of acetylcholine. Required for normal progress through the cell cycle.

Homo sapiens (taxid: 9606)

>sp|Q9D0J4|ARL2_MOUSE ADP-ribosylation factor-like protein 2 OS=Mus musculus GN=Arl2 PE=1 SV=1

 Score =  250 bits (638), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 114/185 (61%), Positives = 153/185 (82%), Gaps = 1/185 (0%)

Query: 1   MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
           MGLL+I++K+K+KE+E+R+LM+GLDN+GKTTI+ K NGED   ISPTLGFNIKT+ ++ +
Sbjct: 1   MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGF 60

Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
            LNIWDVGGQ+++RSYWRNYFE TDGL+WVVDS+D +R+ DC+ EL +LL EERL+GA+L
Sbjct: 61  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 120

Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           LI ANKQD+ GAL+   I + L L+++ ++ HW+I GCSA TGE LL G DWL+ DI+SR
Sbjct: 121 LIFANKQDLPGALSCNAIQEALELDSI-RSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 179

Query: 181 IYLLD 185
           ++  D
Sbjct: 180 VFTAD 184

Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). GTP-binding protein that does not act as an allosteric activator of the cholera toxin catalytic subunit. Regulates formation of new microtubules and centrosome integrity. Prevents the TBCD-induced microtubule destruction. Participates in association with TBCD, in the disassembly of the apical junction complexes. Antagonizes the effect of TBCD on epithelial cell detachment and tight and adherens junctions disassembly. Together with ARL2, plays a role in the nuclear translocation, retention and transcriptional activity of STAT3. Component of a regulated secretory pathway involved in Ca(2+)-dependent release of acetylcholine. Required for normal progress through the cell cycle.

Mus musculus (taxid: 10090)

>sp|O08697|ARL2_RAT ADP-ribosylation factor-like protein 2 OS=Rattus norvegicus GN=Arl2 PE=1 SV=1

 Score =  248 bits (632), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 113/185 (61%), Positives = 153/185 (82%), Gaps = 1/185 (0%)

Query: 1   MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
           MGLL+I++K+K+KE+++R+LM+GLDN+GKTTI+ K NGED   ISPTLGFNIKT+ ++ +
Sbjct: 1   MGLLTILKKMKQKERDVRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGF 60

Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
            LNIWDVGGQ+++RSYWRNYFE TDGL+WVVDS+D +R+ DC+ EL +LL EERL+GA+L
Sbjct: 61  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 120

Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           LI ANKQD+ GAL+   I + L L+++ ++ HW+I GCSA TGE LL G DWL+ DI+SR
Sbjct: 121 LIFANKQDLPGALSCNAIQEALELDSI-RSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 179

Query: 181 IYLLD 185
           ++  D
Sbjct: 180 VFTAD 184

Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). GTP-binding protein that does not act as an allosteric activator of the cholera toxin catalytic subunit. Regulates formation of new microtubules and centrosome integrity. Prevents the TBCD-induced microtubule destruction. Participates in association with TBCD, in the disassembly of the apical junction complexes. Antagonizes the effect of TBCD on epithelial cell detachment and tight and adherens junctions disassembly. Together with ARL2, plays a role in the nuclear translocation, retention and transcriptional activity of STAT3. Component of a regulated secretory pathway involved in Ca(2+)-dependent release of acetylcholine. Required for normal progress through the cell cycle.

Rattus norvegicus (taxid: 10116)

>sp|Q06849|ARL2_DROME ADP-ribosylation factor-like protein 2 OS=Drosophila melanogaster GN=Arf84F PE=2 SV=2

 Score =  243 bits (619), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 113/185 (61%), Positives = 147/185 (79%), Gaps = 1/185 (0%)

Query: 1   MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
           MG L++++K+++KE+EMRIL++GLDN+GKTTI+ + NGE    ISPTLGFNIKT+ +  Y
Sbjct: 1   MGFLTVLKKMRQKEREMRILLLGLDNAGKTTILKRFNGEPIDTISPTLGFNIKTLEHNGY 60

Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
           TLN+WDVGGQ+++RSYWRNYFE TDGLVWVVDS+D  RL+ C  EL  LL+EERL+GA+L
Sbjct: 61  TLNMWDVGGQKSLRSYWRNYFESTDGLVWVVDSADRMRLESCGQELQVLLQEERLAGATL 120

Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           L+L NKQD+ GAL+  EI ++L+LE +  T HW + G SA TGE LL   DWL+ DIA R
Sbjct: 121 LVLCNKQDLPGALSSNEIKEILHLEDI-TTHHWLVAGVSAVTGEKLLSSMDWLIADIAKR 179

Query: 181 IYLLD 185
           I+ LD
Sbjct: 180 IFTLD 184

Does not act as an allosteric activator of the cholera toxin catalytic subunit.

Drosophila melanogaster (taxid: 7227)

>sp|Q627K4|ARL2_CAEBR ADP-ribosylation factor-like protein 2 OS=Caenorhabditis briggsae GN=evl-20.1 PE=3 SV=1

 Score =  229 bits (584), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 107/185 (57%), Positives = 140/185 (75%), Gaps = 1/185 (0%)

Query: 1   MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
           MG L I+RK + +E+EMRIL++GLDN+GKTT++ K   E T  I PTLGF+IKTV ++ +
Sbjct: 1   MGFLKILRKQRAREREMRILILGLDNAGKTTLMKKFLDEPTDTIEPTLGFDIKTVHFKDF 60

Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
            LN+WDVGGQ+++RSYW+NYFE TD L+WVVDSSD  RL  C  EL  LL+EERLSGASL
Sbjct: 61  QLNLWDVGGQKSLRSYWKNYFESTDALIWVVDSSDRERLTQCSEELKKLLQEERLSGASL 120

Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           L+LANK D+ GA+    IA+VL L+++ KT HWKI  C A +GE L++   WL  D+ SR
Sbjct: 121 LVLANKSDLPGAIDVNSIAQVLELQSI-KTHHWKIFSCCALSGERLVQAMTWLCDDVGSR 179

Query: 181 IYLLD 185
           I++LD
Sbjct: 180 IFILD 184

GTP-binding protein that functions in embryogenesis, cytokinesis, germline development and microtubulule cytoskeleton dynamics.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q54UF1|ARL2_DICDI ADP-ribosylation factor-like protein 2 OS=Dictyostelium discoideum GN=arl2 PE=3 SV=1

 Score =  225 bits (573), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 117/185 (63%), Positives = 158/185 (85%), Gaps = 1/185 (0%)

Query: 1   MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
           MGLL++++K+K+KEKE+RILM+GLDN+GKTTI+ K NGED S ISPTLGFNI+T+ Y++Y
Sbjct: 1   MGLLTVLKKLKQKEKELRILMLGLDNAGKTTILKKFNGEDISTISPTLGFNIQTLMYKEY 60

Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
            LNIWD+GGQ+T+RSYWRNY+E+ D ++WV+DSSD+RR+DDCK EL  LL+EE+ +GAS 
Sbjct: 61  KLNIWDIGGQKTLRSYWRNYYEENDAVIWVIDSSDIRRIDDCKFELKKLLEEEKFAGASF 120

Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           L+ ANKQD++GA+T  EI+K L+LE ++ T HW+I+ CSA TG GL EG DW+V+DI SR
Sbjct: 121 LVFANKQDLDGAMTSEEISKYLDLEQLN-THHWEIMSCSAVTGLGLEEGIDWVVKDIVSR 179

Query: 181 IYLLD 185
            ++LD
Sbjct: 180 CFVLD 184

May be involved in trafficking events within the endosomal system.

Dictyostelium discoideum (taxid: 44689)

>sp|Q19705|ARL2_CAEEL ADP-ribosylation factor-like protein 2 OS=Caenorhabditis elegans GN=evl-20 PE=2 SV=2

 Score =  222 bits (565), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 103/185 (55%), Positives = 139/185 (75%), Gaps = 1/185 (0%)

Query: 1   MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
           MG L I+RK + +E+EMRIL++GLDN+GKTT++ K   E T  I PTLGF+IKTV ++ +
Sbjct: 1   MGFLKILRKQRAREREMRILILGLDNAGKTTLMKKFLDEPTDTIEPTLGFDIKTVHFKDF 60

Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
            LN+WDVGGQ+++RSYW+NYFE TD L+WVVDSSD  RL  C  EL  LL EERL+GASL
Sbjct: 61  QLNLWDVGGQKSLRSYWKNYFESTDALIWVVDSSDRERLLQCSEELKKLLGEERLAGASL 120

Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           L+LANK D+ GA+    IA+VL+L ++ K+ HWKI  C A +G+ L++   WL  D+ SR
Sbjct: 121 LVLANKSDLPGAIDVNSIAQVLDLHSI-KSHHWKIFSCCALSGDRLVQAMTWLCDDVGSR 179

Query: 181 IYLLD 185
           +++LD
Sbjct: 180 LFILD 184

GTP-binding protein that functions in embryogenesis, cytokinesis, germline development and microtubulule cytoskeleton dynamics.

Caenorhabditis elegans (taxid: 6239)

>sp|B5FYQ0|ARL3_TAEGU ADP-ribosylation factor-like protein 3 OS=Taeniopygia guttata GN=ARL3 PE=2 SV=1

 Score =  196 bits (499), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 93/181 (51%), Positives = 136/181 (75%), Gaps = 2/181 (1%)

Query: 1   MGLLSIIRKIKK-KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQK 59
           MGLLSI+RK+K   ++E+RIL++GLDN+GKTT++ ++  ED S I+PT GFNIK+V  Q 
Sbjct: 1   MGLLSILRKLKSTPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQG 60

Query: 60  YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS 119
           + LN+WD+GGQR IR YWRNYFE TD L++V+DS+D +R ++   EL  LL EE+LSG  
Sbjct: 61  FKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLDEEKLSGVP 120

Query: 120 LLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179
           +LI ANKQD+  A   +EIA+ LNL  + + R W+I  CSA +GEG+ +G +W+ +++++
Sbjct: 121 VLIFANKQDLLTAAPASEIAEGLNLHTI-RDRVWQIQSCSALSGEGVQDGMNWVCKNVST 179

Query: 180 R 180
           +
Sbjct: 180 K 180

Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). Required for normal cytokinesis and cilia signaling. Required for targeting proteins to the ciliary membrane by releasing myristoylated protein from unc119 cargo adapters into the cilium.

Taeniopygia guttata (taxid: 59729)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
225430752	185	PREDICTED: probable ADP-ribosylation fac	1.0	1.0	0.967	1e-98
255560980	204	ADP-ribosylation factor, putative [Ricin	1.0	0.906	0.956	1e-98
224097000	185	predicted protein [Populus trichocarpa]	1.0	1.0	0.956	5e-98
356496769	185	PREDICTED: probable ADP-ribosylation fac	1.0	1.0	0.951	7e-98
351726926	185	uncharacterized protein LOC100305563 [Gl	1.0	1.0	0.945	3e-97
449496489	185	PREDICTED: probable ADP-ribosylation fac	1.0	1.0	0.940	2e-96
449451523	185	PREDICTED: probable ADP-ribosylation fac	1.0	1.0	0.935	4e-96
357152784	185	PREDICTED: probable ADP-ribosylation fac	1.0	1.0	0.886	1e-92
226531328	185	ADP-ribosylation factor [Zea mays] gi|19	1.0	1.0	0.886	2e-92
223944113	185	unknown [Zea mays] gi|238013744|gb|ACR37	1.0	1.0	0.881	4e-92

>gi|225430752|ref|XP_002267002.1| PREDICTED: probable ADP-ribosylation factor At2g18390 [Vitis vinifera] gi|147792210|emb|CAN72979.1| hypothetical protein VITISV_009030 [Vitis vinifera] gi|297735152|emb|CBI17514.3| unnamed protein product [Vitis vinifera]

 Score =  364 bits (934), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 179/185 (96%), Positives = 182/185 (98%)

Query: 1   MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
           MGLLSIIRKIK+KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT+TY KY
Sbjct: 1   MGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYHKY 60

Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
           TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL
Sbjct: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120

Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           LILANKQDINGALTP EIAKVLNLEAMDKTRHWKIVGCSA TGEGLLEGFDWLVQDIASR
Sbjct: 121 LILANKQDINGALTPAEIAKVLNLEAMDKTRHWKIVGCSAITGEGLLEGFDWLVQDIASR 180

Query: 181 IYLLD 185
           IY+LD
Sbjct: 181 IYVLD 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560980|ref|XP_002521502.1| ADP-ribosylation factor, putative [Ricinus communis] gi|223539180|gb|EEF40773.1| ADP-ribosylation factor, putative [Ricinus communis]

 Score =  363 bits (933), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 177/185 (95%), Positives = 181/185 (97%)

Query: 1   MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
           MGLLSIIRKIK+KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT+TYQKY
Sbjct: 20  MGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQKY 79

Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
           TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL
Sbjct: 80  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 139

Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           LI ANKQDI GALTP EIAKVLNLE MDKTRHWKI+GCSAYTGEGLLEGFDWLVQDIASR
Sbjct: 140 LIFANKQDIKGALTPEEIAKVLNLENMDKTRHWKIMGCSAYTGEGLLEGFDWLVQDIASR 199

Query: 181 IYLLD 185
           IY+LD
Sbjct: 200 IYMLD 204

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097000|ref|XP_002310807.1| predicted protein [Populus trichocarpa] gi|222853710|gb|EEE91257.1| predicted protein [Populus trichocarpa]

 Score =  362 bits (928), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 177/185 (95%), Positives = 181/185 (97%)

Query: 1   MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
           MGLLSIIRKIK+KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT++YQKY
Sbjct: 1   MGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTISYQKY 60

Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
           TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL
Sbjct: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120

Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           LI ANKQDI GALTP EIAKVLNLE MDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR
Sbjct: 121 LIFANKQDIKGALTPEEIAKVLNLENMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180

Query: 181 IYLLD 185
           IY+LD
Sbjct: 181 IYMLD 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496769|ref|XP_003517238.1| PREDICTED: probable ADP-ribosylation factor At2g18390-like [Glycine max]

 Score =  361 bits (927), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 176/185 (95%), Positives = 182/185 (98%)

Query: 1   MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
           MGLLSIIRKIK+KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT+TYQKY
Sbjct: 1   MGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQKY 60

Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
           TLNIWDVGGQ+TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCK ELDNLLKEERLSGASL
Sbjct: 61  TLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKFELDNLLKEERLSGASL 120

Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           LILANKQDI GALTP EIAKVLNLEAMDK+RHW+IVGCSAYTGEGLLEGFDWLVQDIASR
Sbjct: 121 LILANKQDIKGALTPEEIAKVLNLEAMDKSRHWQIVGCSAYTGEGLLEGFDWLVQDIASR 180

Query: 181 IYLLD 185
           IY+LD
Sbjct: 181 IYMLD 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726926|ref|NP_001237143.1| uncharacterized protein LOC100305563 [Glycine max] gi|255625923|gb|ACU13306.1| unknown [Glycine max]

 Score =  359 bits (921), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 175/185 (94%), Positives = 181/185 (97%)

Query: 1   MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
           MGLLSIIRKIK+KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT+TYQKY
Sbjct: 1   MGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQKY 60

Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
           TLNIWDVGGQ+TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCK ELDNLLKEERLSGASL
Sbjct: 61  TLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKFELDNLLKEERLSGASL 120

Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           LILANKQDI GALTP EIAKVLNLEAMDK+RHW+IVGCS YTGEGLLEGFDWLVQDIASR
Sbjct: 121 LILANKQDIKGALTPEEIAKVLNLEAMDKSRHWQIVGCSTYTGEGLLEGFDWLVQDIASR 180

Query: 181 IYLLD 185
           IY+LD
Sbjct: 181 IYMLD 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449496489|ref|XP_004160147.1| PREDICTED: probable ADP-ribosylation factor At2g18390-like [Cucumis sativus]

 Score =  356 bits (914), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 174/185 (94%), Positives = 180/185 (97%)

Query: 1   MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
           MGLLSIIRKIK+KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT+ Y KY
Sbjct: 1   MGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTIIYHKY 60

Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
           TLNIWDVGGQ+TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCK ELDNLLKEERLSGASL
Sbjct: 61  TLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKSELDNLLKEERLSGASL 120

Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           LILANKQDI GAL+P EIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQD+ASR
Sbjct: 121 LILANKQDIKGALSPEEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDVASR 180

Query: 181 IYLLD 185
           IY+LD
Sbjct: 181 IYVLD 185

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451523|ref|XP_004143511.1| PREDICTED: probable ADP-ribosylation factor At2g18390-like [Cucumis sativus]

 Score =  355 bits (911), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 173/185 (93%), Positives = 180/185 (97%)

Query: 1   MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
           MGLLSIIRKIK+KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT+ Y KY
Sbjct: 1   MGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTIIYHKY 60

Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
           TLNIWDVGGQ+TIRSYWRNYFEQTDGLVWVVDSS+LRRLDDCK ELDNLLKEERLSGASL
Sbjct: 61  TLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSELRRLDDCKSELDNLLKEERLSGASL 120

Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           LILANKQDI GAL+P EIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQD+ASR
Sbjct: 121 LILANKQDIKGALSPEEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDVASR 180

Query: 181 IYLLD 185
           IY+LD
Sbjct: 181 IYVLD 185

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357152784|ref|XP_003576235.1| PREDICTED: probable ADP-ribosylation factor At2g18390-like [Brachypodium distachyon]

 Score =  344 bits (882), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 164/185 (88%), Positives = 176/185 (95%)

Query: 1   MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
           MGLLSIIRKIK+KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT+ YQKY
Sbjct: 1   MGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTIQYQKY 60

Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
           +LNIWDVGGQ+TIRSYWRNYFEQTDGLVWVVDSSD+RRLDDC+ EL NLLKEERL+GASL
Sbjct: 61  SLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDVRRLDDCRAELHNLLKEERLAGASL 120

Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           L+ ANKQDI GAL P EIAKVLNL AMDK RHWKIVGCSAYTG+GLL+GFDWLVQD+ASR
Sbjct: 121 LVFANKQDIQGALKPAEIAKVLNLAAMDKDRHWKIVGCSAYTGDGLLQGFDWLVQDVASR 180

Query: 181 IYLLD 185
           IY+LD
Sbjct: 181 IYVLD 185

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226531328|ref|NP_001149177.1| ADP-ribosylation factor [Zea mays] gi|195625268|gb|ACG34464.1| ADP-ribosylation factor [Zea mays] gi|195641198|gb|ACG40067.1| ADP-ribosylation factor [Zea mays] gi|223974303|gb|ACN31339.1| unknown [Zea mays]

 Score =  343 bits (879), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 164/185 (88%), Positives = 175/185 (94%)

Query: 1   MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
           MGLLSIIRKIK+KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT+ Y KY
Sbjct: 1   MGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTIKYHKY 60

Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
           +LNIWDVGGQ+TIRSYWRNYFEQTDGLVWVVDSSD+RRLDDC+ EL NLLKEERL GASL
Sbjct: 61  SLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDIRRLDDCRAELHNLLKEERLVGASL 120

Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           L+ ANKQDI GAL P EIAKVLNLE MD++RHWKIVGCSAYTGEGLLEGFDWLVQD+ASR
Sbjct: 121 LVFANKQDIQGALKPDEIAKVLNLEVMDRSRHWKIVGCSAYTGEGLLEGFDWLVQDVASR 180

Query: 181 IYLLD 185
           IY+LD
Sbjct: 181 IYVLD 185

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223944113|gb|ACN26140.1| unknown [Zea mays] gi|238013744|gb|ACR37907.1| unknown [Zea mays] gi|414871984|tpg|DAA50541.1| TPA: ADP-ribosylation factor isoform 1 [Zea mays] gi|414871985|tpg|DAA50542.1| TPA: ADP-ribosylation factor isoform 2 [Zea mays]

 Score =  342 bits (877), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 163/185 (88%), Positives = 175/185 (94%)

Query: 1   MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
           MGLLSIIRKIK+KEKEMRILMVGLDNSGKTTIVLKINGEDTS+ISPTLGFNIKT+ Y KY
Sbjct: 1   MGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVLKINGEDTSIISPTLGFNIKTIKYHKY 60

Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
           +LNIWDVGGQ+TIRSYWRNYFEQTDGLVWVVDSSD+RRLDDC+ EL NLLKEERL GASL
Sbjct: 61  SLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDIRRLDDCRAELHNLLKEERLVGASL 120

Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           L+ ANKQDI GAL P EIAKVLNLE MD++RHWKIVGCSAYTGEGLLEGFDWLVQD+ASR
Sbjct: 121 LVFANKQDIQGALKPDEIAKVLNLEVMDRSRHWKIVGCSAYTGEGLLEGFDWLVQDVASR 180

Query: 181 IYLLD 185
           IY+LD
Sbjct: 181 IYVLD 185

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
TAIR|locus:2062085	185	TTN5 "TITAN 5" [Arabidopsis th	1.0	1.0	0.864	6.4e-83
DICTYBASE|DDB_G0281307	184	arl2 "ARF-like protein" [Dicty	0.994	1.0	0.589	3.5e-59
ZFIN|ZDB-GENE-041010-19	184	arl2 "ADP-ribosylation factor-	0.994	1.0	0.621	2.2e-57
UNIPROTKB|Q2TA37	184	ARL2 "ADP-ribosylation factor-	0.994	1.0	0.589	2e-56
UNIPROTKB|P36404	184	ARL2 "ADP-ribosylation factor-	0.994	1.0	0.589	5.3e-56
UNIPROTKB|F1RQS8	184	LOC100515705 "Uncharacterized	0.994	1.0	0.583	8.6e-56
MGI|MGI:1928393	184	Arl2 "ADP-ribosylation factor-	0.994	1.0	0.578	8.6e-56
RGD|69326	184	Arl2 "ADP-ribosylation factor-	0.994	1.0	0.578	8.6e-56
UNIPROTKB|O08697	184	Arl2 "ADP-ribosylation factor-	0.994	1.0	0.578	8.6e-56
FB|FBgn0004908	184	Arl2 "ADP ribosylation factor-	0.994	1.0	0.572	8.9e-54

TAIR|locus:2062085 TTN5 "TITAN 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
 Identities = 160/185 (86%), Positives = 167/185 (90%)

Query:     1 MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
             MGLLS              LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT+ YQKY
Sbjct:     1 MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTIIYQKY 60

Query:    61 TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
             TLNIWDVGGQ+TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERL+G+SL
Sbjct:    61 TLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLAGSSL 120

Query:   121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
             LILANKQDI GALTP EI KVLNLE+MDK+RHWKIVGCSAYTGEGLLEGFDWLVQDIASR
Sbjct:   121 LILANKQDIQGALTPDEIGKVLNLESMDKSRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180

Query:   181 IYLLD 185
             IY+LD
Sbjct:   181 IYMLD 185

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0009630 "gravitropism" evidence=NAS

GO:0003924 "GTPase activity" evidence=ISS

GO:0009558 "embryo sac cellularization" evidence=IMP

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009960 "endosperm development" evidence=IMP

GO:0000226 "microtubule cytoskeleton organization" evidence=TAS

GO:0007021 "tubulin complex assembly" evidence=ISS

DICTYBASE|DDB_G0281307 arl2 "ARF-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 109/185 (58%), Positives = 144/185 (77%)

Query:     1 MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
             MGLL+              LM+GLDN+GKTTI+ K NGED S ISPTLGFNI+T+ Y++Y
Sbjct:     1 MGLLTVLKKLKQKEKELRILMLGLDNAGKTTILKKFNGEDISTISPTLGFNIQTLMYKEY 60

Query:    61 TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
              LNIWD+GGQ+T+RSYWRNY+E+ D ++WV+DSSD+RR+DDCK EL  LL+EE+ +GAS 
Sbjct:    61 KLNIWDIGGQKTLRSYWRNYYEENDAVIWVIDSSDIRRIDDCKFELKKLLEEEKFAGASF 120

Query:   121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
             L+ ANKQD++GA+T  EI+K L+LE ++ T HW+I+ CSA TG GL EG DW+V+DI SR
Sbjct:   121 LVFANKQDLDGAMTSEEISKYLDLEQLN-THHWEIMSCSAVTGLGLEEGIDWVVKDIVSR 179

Query:   181 IYLLD 185
              ++LD
Sbjct:   180 CFVLD 184

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-041010-19 arl2 "ADP-ribosylation factor-like 2" [Danio rerio (taxid:7955)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 115/185 (62%), Positives = 139/185 (75%)

Query:     1 MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
             MGLL+              LM+GLDN+GKTTI+ K NGED S ISPTLGFNIKT+ ++ +
Sbjct:     1 MGLLTILKKMKHKEREMRLLMLGLDNAGKTTILKKFNGEDVSTISPTLGFNIKTLEHRGF 60

Query:    61 TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
              LNIWDVGGQ+ +RSYWRNYFE TDGLVWVVDS+D  RLDDC+ EL+ LL EERL+GA+L
Sbjct:    61 KLNIWDVGGQKPLRSYWRNYFESTDGLVWVVDSADRLRLDDCRKELNALLLEERLAGATL 120

Query:   121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
             L+ ANKQD+ GAL+   I +VL L+ + KT HW IVGCSA TGE LL G DWL+ DIA+R
Sbjct:   121 LVFANKQDLPGALSKDGIREVLALDDI-KTHHWCIVGCSAVTGENLLSGVDWLLDDIAAR 179

Query:   181 IYLLD 185
             I+  D
Sbjct:   180 IFTTD 184

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q2TA37 ARL2 "ADP-ribosylation factor-like protein 2" [Bos taurus (taxid:9913)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 109/185 (58%), Positives = 139/185 (75%)

Query:     1 MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
             MGLL+              LM+GLDN+GKTTI+ K NGED   ISPTLGFNIKT+ ++ +
Sbjct:     1 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF 60

Query:    61 TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
              LNIWDVGGQ+++RSYWRNYFE TDGL+WVVDS+D +R+ DC+ EL NLL EERL+GA+L
Sbjct:    61 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQNLLVEERLAGATL 120

Query:   121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
             LI ANKQD+ GAL+   I + L L+++ ++ HW I GCSA TGE LL G DWL+ DI+SR
Sbjct:   121 LIFANKQDLPGALSSNAIREALELDSI-RSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 179

Query:   181 IYLLD 185
             I++ D
Sbjct:   180 IFMAD 184

GO:0005634 "nucleus" evidence=ISS

GO:0051457 "maintenance of protein location in nucleus" evidence=ISS

GO:0005813 "centrosome" evidence=ISS

GO:0051297 "centrosome organization" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0034260 "negative regulation of GTPase activity" evidence=ISS

GO:0034333 "adherens junction assembly" evidence=IDA

GO:0070830 "tight junction assembly" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016328 "lateral plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0031116 "positive regulation of microtubule polymerization" evidence=IDA

GO:0010811 "positive regulation of cell-substrate adhesion" evidence=IDA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P36404 ARL2 "ADP-ribosylation factor-like protein 2" [Homo sapiens (taxid:9606)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 109/185 (58%), Positives = 139/185 (75%)

Query:     1 MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
             MGLL+              LM+GLDN+GKTTI+ K NGED   ISPTLGFNIKT+ ++ +
Sbjct:     1 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF 60

Query:    61 TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
              LNIWDVGGQ+++RSYWRNYFE TDGL+WVVDS+D +R+ DC+ EL +LL EERL+GA+L
Sbjct:    61 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 120

Query:   121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
             LI ANKQD+ GAL+   I +VL L+++ ++ HW I GCSA TGE LL G DWL+ DI+SR
Sbjct:   121 LIFANKQDLPGALSSNAIREVLELDSI-RSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 179

Query:   181 IYLLD 185
             I+  D
Sbjct:   180 IFTAD 184

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0034260 "negative regulation of GTPase activity" evidence=IDA

GO:0031116 "positive regulation of microtubule polymerization" evidence=IDA

GO:0005758 "mitochondrial intermembrane space" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0051457 "maintenance of protein location in nucleus" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0003924 "GTPase activity" evidence=IMP

GO:0005525 "GTP binding" evidence=IMP

GO:0005813 "centrosome" evidence=IDA

GO:0031113 "regulation of microtubule polymerization" evidence=IMP

GO:0051297 "centrosome organization" evidence=IMP

GO:0016328 "lateral plasma membrane" evidence=ISS

GO:0010811 "positive regulation of cell-substrate adhesion" evidence=ISS

GO:0070830 "tight junction assembly" evidence=ISS

GO:0005095 "GTPase inhibitor activity" evidence=TAS

GO:0007021 "tubulin complex assembly" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=IMP

UNIPROTKB|F1RQS8 LOC100515705 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 108/185 (58%), Positives = 139/185 (75%)

Query:     1 MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
             MGLL+              LM+GLDN+GKTTI+ K NGED   ISPTLGFNIKT+ ++ +
Sbjct:     1 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF 60

Query:    61 TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
              LNIWDVGGQ+++RSYWRNYFE TDGL+WVVDS+D +R+ DC+ EL +LL EERL+GA+L
Sbjct:    61 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 120

Query:   121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
             LI ANKQD+ GAL+   I + L L+++ ++ HW I GCSA TGE LL G DWL+ DI+SR
Sbjct:   121 LIFANKQDLPGALSSKAIREALELDSI-RSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 179

Query:   181 IYLLD 185
             I++ D
Sbjct:   180 IFMAD 184

GO:0051457 "maintenance of protein location in nucleus" evidence=IEA

GO:0051297 "centrosome organization" evidence=IEA

GO:0034260 "negative regulation of GTPase activity" evidence=IEA

GO:0031116 "positive regulation of microtubule polymerization" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

MGI|MGI:1928393 Arl2 "ADP-ribosylation factor-like 2" [Mus musculus (taxid:10090)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 107/185 (57%), Positives = 139/185 (75%)

Query:     1 MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
             MGLL+              LM+GLDN+GKTTI+ K NGED   ISPTLGFNIKT+ ++ +
Sbjct:     1 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGF 60

Query:    61 TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
              LNIWDVGGQ+++RSYWRNYFE TDGL+WVVDS+D +R+ DC+ EL +LL EERL+GA+L
Sbjct:    61 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 120

Query:   121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
             LI ANKQD+ GAL+   I + L L+++ ++ HW+I GCSA TGE LL G DWL+ DI+SR
Sbjct:   121 LIFANKQDLPGALSCNAIQEALELDSI-RSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 179

Query:   181 IYLLD 185
             ++  D
Sbjct:   180 VFTAD 184

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=ISO;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015870 "acetylcholine transport" evidence=ISO

GO:0019003 "GDP binding" evidence=IDA

GO:0031113 "regulation of microtubule polymerization" evidence=ISO

GO:0031116 "positive regulation of microtubule polymerization" evidence=ISO

GO:0034260 "negative regulation of GTPase activity" evidence=ISO

GO:0051297 "centrosome organization" evidence=ISO

GO:0051457 "maintenance of protein location in nucleus" evidence=ISO

RGD|69326 Arl2 "ADP-ribosylation factor-like 2" [Rattus norvegicus (taxid:10116)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 107/185 (57%), Positives = 139/185 (75%)

Query:     1 MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
             MGLL+              LM+GLDN+GKTTI+ K NGED   ISPTLGFNIKT+ ++ +
Sbjct:     1 MGLLTILKKMKQKERDVRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGF 60

Query:    61 TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
              LNIWDVGGQ+++RSYWRNYFE TDGL+WVVDS+D +R+ DC+ EL +LL EERL+GA+L
Sbjct:    61 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 120

Query:   121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
             LI ANKQD+ GAL+   I + L L+++ ++ HW+I GCSA TGE LL G DWL+ DI+SR
Sbjct:   121 LIFANKQDLPGALSCNAIQEALELDSI-RSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 179

Query:   181 IYLLD 185
             ++  D
Sbjct:   180 VFTAD 184

GO:0003924 "GTPase activity" evidence=IEA;ISO;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO;ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA;ISO;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005813 "centrosome" evidence=IEA;ISO;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=ISO;ISS

GO:0007049 "cell cycle" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0010811 "positive regulation of cell-substrate adhesion" evidence=ISS

GO:0015870 "acetylcholine transport" evidence=IDA

GO:0016328 "lateral plasma membrane" evidence=ISS

GO:0019003 "GDP binding" evidence=IEA;ISO

GO:0031113 "regulation of microtubule polymerization" evidence=ISO;ISS

GO:0031116 "positive regulation of microtubule polymerization" evidence=IEA;ISO;ISS

GO:0034260 "negative regulation of GTPase activity" evidence=IEA;ISO;ISS

GO:0051297 "centrosome organization" evidence=IEA;ISO;ISS

GO:0051457 "maintenance of protein location in nucleus" evidence=IEA;ISO;ISS

GO:0070830 "tight junction assembly" evidence=ISS

UNIPROTKB|O08697 Arl2 "ADP-ribosylation factor-like protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 107/185 (57%), Positives = 139/185 (75%)

Query:     1 MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
             MGLL+              LM+GLDN+GKTTI+ K NGED   ISPTLGFNIKT+ ++ +
Sbjct:     1 MGLLTILKKMKQKERDVRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGF 60

Query:    61 TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
              LNIWDVGGQ+++RSYWRNYFE TDGL+WVVDS+D +R+ DC+ EL +LL EERL+GA+L
Sbjct:    61 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 120

Query:   121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
             LI ANKQD+ GAL+   I + L L+++ ++ HW+I GCSA TGE LL G DWL+ DI+SR
Sbjct:   121 LIFANKQDLPGALSCNAIQEALELDSI-RSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 179

Query:   181 IYLLD 185
             ++  D
Sbjct:   180 VFTAD 184

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

FB|FBgn0004908 Arl2 "ADP ribosylation factor-like 2" [Drosophila melanogaster (taxid:7227)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 106/185 (57%), Positives = 133/185 (71%)

Query:     1 MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
             MG L+              L++GLDN+GKTTI+ + NGE    ISPTLGFNIKT+ +  Y
Sbjct:     1 MGFLTVLKKMRQKEREMRILLLGLDNAGKTTILKRFNGEPIDTISPTLGFNIKTLEHNGY 60

Query:    61 TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
             TLN+WDVGGQ+++RSYWRNYFE TDGLVWVVDS+D  RL+ C  EL  LL+EERL+GA+L
Sbjct:    61 TLNMWDVGGQKSLRSYWRNYFESTDGLVWVVDSADRMRLESCGQELQVLLQEERLAGATL 120

Query:   121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
             L+L NKQD+ GAL+  EI ++L+LE +  T HW + G SA TGE LL   DWL+ DIA R
Sbjct:   121 LVLCNKQDLPGALSSNEIKEILHLEDIT-THHWLVAGVSAVTGEKLLSSMDWLIADIAKR 179

Query:   181 IYLLD 185
             I+ LD
Sbjct:   180 IFTLD 184

GO:0006471 "protein ADP-ribosylation" evidence=ISS;NAS

GO:0005525 "GTP binding" evidence=ISS;NAS

GO:0016197 "endosomal transport" evidence=TAS

GO:0048488 "synaptic vesicle endocytosis" evidence=TAS

GO:0007269 "neurotransmitter secretion" evidence=TAS

GO:0003924 "GTPase activity" evidence=ISS;NAS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2TA37	ARL2_BOVIN	No assigned EC number	0.6270	0.9945	1.0	yes	no
Q06849	ARL2_DROME	No assigned EC number	0.6108	0.9945	1.0	yes	no
Q9ZPX1	ARF5_ARATH	No assigned EC number	0.9405	1.0	1.0	yes	no
Q5R5P7	ARF3_PONAB	No assigned EC number	0.4550	0.8972	0.9171	yes	no
O08697	ARL2_RAT	No assigned EC number	0.6108	0.9945	1.0	yes	no
Q54UF1	ARL2_DICDI	No assigned EC number	0.6324	0.9945	1.0	yes	no
P36404	ARL2_HUMAN	No assigned EC number	0.6270	0.9945	1.0	yes	no
P38116	ARL1_YEAST	No assigned EC number	0.4647	0.9135	0.9234	yes	no
Q8QHI3	ARL3_XENLA	No assigned EC number	0.5138	0.9675	0.9835	N/A	no
Q09767	ARL_SCHPO	No assigned EC number	0.4802	0.9513	0.9462	yes	no
B5FYQ0	ARL3_TAEGU	No assigned EC number	0.5138	0.9675	0.9835	yes	no
Q9D0J4	ARL2_MOUSE	No assigned EC number	0.6162	0.9945	1.0	yes	no
Q627K4	ARL2_CAEBR	No assigned EC number	0.5783	0.9945	1.0	N/A	no
Q19705	ARL2_CAEEL	No assigned EC number	0.5567	0.9945	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	185
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	1e-111
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	2e-86
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	2e-76
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	9e-72
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	2e-61
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	6e-58
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	6e-57
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	2e-56
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	1e-55
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	7e-55
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	3e-54
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	3e-51
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	1e-43
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	1e-43
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	3e-41
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	1e-39
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	2e-38
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	8e-38
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	2e-35
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	3e-35
smart00178	184	smart00178, SAR, Sar1p-like members of the Ras-fam	6e-30
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	1e-22
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	8e-22
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	1e-14
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	3e-12
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	4e-12
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	4e-09
pfam00071	162	pfam00071, Ras, Ras family	3e-08
cd00880	161	cd00880, Era_like, E	1e-06
pfam08477	116	pfam08477, Miro, Miro-like protein	3e-06
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	4e-06
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	4e-06
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	7e-06
pfam00503	329	pfam00503, G-alpha, G-protein alpha subunit	8e-06
cd04105	202	cd04105, SR_beta, Signal recognition particle rece	2e-05
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	3e-05
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	9e-05
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	2e-04
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	2e-04
pfam09439	181	pfam09439, SRPRB, Signal recognition particle rece	2e-04
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	3e-04
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	3e-04
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	4e-04
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	5e-04
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	5e-04
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	9e-04
cd01898	170	cd01898, Obg, Obg GTPase	0.001
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	0.001
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	0.002
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	0.004
smart00275	342	smart00275, G_alpha, G protein alpha subunit	0.004

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score =  313 bits (805), Expect = e-111
 Identities = 121/174 (69%), Positives = 144/174 (82%), Gaps = 1/174 (0%)

Query: 3   LLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTL 62
           LL+I+RK K+KE+EMRILM+GLDN+GKTTI+ K NGED S ISPTLGFNIKT+ Y  Y L
Sbjct: 1   LLTILRKTKQKEREMRILMLGLDNAGKTTILKKFNGEDISTISPTLGFNIKTLEYNGYKL 60

Query: 63  NIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLI 122
           NIWDVGGQ+++RSYWRNYFE TD L+WVVDSSD  RL+DCK EL  LL EERL+GA+LLI
Sbjct: 61  NIWDVGGQKSLRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLI 120

Query: 123 LANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQD 176
            ANKQD+ GAL+P EI +VL L++  K+ HW+I GCSA TGE LL+G DWLV D
Sbjct: 121 FANKQDLPGALSPEEIREVLELDS-IKSHHWRIFGCSAVTGENLLDGIDWLVDD 173

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score =  251 bits (643), Expect = 2e-86
 Identities = 92/175 (52%), Positives = 122/175 (69%), Gaps = 1/175 (0%)

Query: 3   LLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTL 62
            LSI+ K+    KEMRIL++GLDN+GKTTI+ K+   +     PT+GFN++TVTY+    
Sbjct: 1   FLSILAKLFGWNKEMRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVTYKNVKF 60

Query: 63  NIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLI 122
            +WDVGGQ ++R  WRNYF  TD +++VVDS+D  R+++ K EL  LL EE L+ A LLI
Sbjct: 61  TVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLI 120

Query: 123 LANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
           LANKQD+ GA++  EI ++L L  + K R W+I GCSA TGEGL EG DWL   I
Sbjct: 121 LANKQDLPGAMSEAEIRELLGLHEL-KDRPWEIQGCSAVTGEGLDEGLDWLSNYI 174

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score =  225 bits (576), Expect = 2e-76
 Identities = 85/158 (53%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 18  RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYW 77
           RILM+GLD +GKTTI+ K+   +     PT+GFN++TV Y+     +WDVGGQ  IR  W
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVKFTVWDVGGQDKIRPLW 60

Query: 78  RNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTE 137
           ++Y+E TDGL++VVDSSD  R+++ K EL  LL EE L GA LLILANKQD+ GALT +E
Sbjct: 61  KHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGALTESE 120

Query: 138 IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ 175
           + ++L LE++   R W I  CSA TG+GL EG DWL++
Sbjct: 121 LIELLGLESIKG-RRWHIQPCSAVTGDGLDEGLDWLIE 157

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score =  214 bits (546), Expect = 9e-72
 Identities = 91/174 (52%), Positives = 125/174 (71%), Gaps = 2/174 (1%)

Query: 3   LLSIIRKIKKKE-KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYT 61
           LLSI+RK+K    +E+RIL++GLDN+GKTTI+ ++  ED S I+PT GFNIK V    + 
Sbjct: 1   LLSILRKLKPSSRQEVRILLLGLDNAGKTTILKQLASEDISHITPTQGFNIKNVQADGFK 60

Query: 62  LNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLL 121
           LN+WD+GGQR IR YWRNYFE TD L++V+DS+D +R ++   EL  LL+EE+L+G  +L
Sbjct: 61  LNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVL 120

Query: 122 ILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ 175
           + ANKQD+  A    E+A+ LNL  + + R W I  CSA TGEGL EG +W+ +
Sbjct: 121 VFANKQDLLTAAPAEEVAEALNLHDI-RDRSWHIQACSAKTGEGLQEGMNWVCK 173

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score =  187 bits (477), Expect = 2e-61
 Identities = 81/160 (50%), Positives = 109/160 (68%), Gaps = 3/160 (1%)

Query: 18  RILMVGLDNSGKTTIVLKIN-GEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSY 76
           RIL++GLD +GKTTI+ ++  GE  + I PT+GFN++TVTY+     +WD+GGQ +IR Y
Sbjct: 1   RILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFNVETVTYKNLKFQVWDLGGQTSIRPY 59

Query: 77  WRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPT 136
           WR Y+  TD +++VVDS+D  RL   K EL  +L+EE L  A LL+ ANKQD+ GAL+  
Sbjct: 60  WRCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVFANKQDMPGALSEA 119

Query: 137 EIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQD 176
           E+A+ L L  + K R W+I   SA  GEGL EG DWLV  
Sbjct: 120 EVAEKLGLSEL-KDRTWQIFKTSATKGEGLDEGMDWLVNT 158

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score =  178 bits (454), Expect = 6e-58
 Identities = 73/164 (44%), Positives = 106/164 (64%), Gaps = 1/164 (0%)

Query: 13  KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRT 72
             KEMRILM+GLD +GKTTI+ K+    +    PT+GFN++TVTY+    N+WDVGGQ  
Sbjct: 6   GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDK 65

Query: 73  IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132
           IR  WR+Y+  T GL++VVDS+D  R+D+ + EL  ++ +  +  A LL+ ANKQD+  A
Sbjct: 66  IRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA 125

Query: 133 LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQD 176
           + P EI + L L  + + R+W +    A +G+GL EG  WL  +
Sbjct: 126 MKPHEIQEKLGLTRI-RDRNWYVQPSCATSGDGLYEGLTWLSSN 168

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score =  176 bits (449), Expect = 6e-57
 Identities = 86/182 (47%), Positives = 122/182 (67%), Gaps = 4/182 (2%)

Query: 1   MGL-LSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKIN-GEDTSVISPTLGFNIKTVTYQ 58
           MGL LS   K    +KE+RILMVGLD +GKTTI+ K+  GE  + I PT+GFN++TV Y+
Sbjct: 1   MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTI-PTIGFNVETVEYK 59

Query: 59  KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGA 118
                +WDVGGQ  +R  WR+Y++ T+GL++VVDS+D  R+ D + EL+ +L E+ L  A
Sbjct: 60  NLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDA 119

Query: 119 SLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178
            LL+ ANKQD+  A++ TE+ + L L ++ + R+W I GC A T +GL EG DWL  +I 
Sbjct: 120 VLLVFANKQDLPNAMSTTEVTEKLGLHSV-RQRNWYIQGCCATTAQGLYEGLDWLSANIK 178

Query: 179 SR 180
             
Sbjct: 179 KS 180

Length = 182

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score =  174 bits (444), Expect = 2e-56
 Identities = 76/158 (48%), Positives = 107/158 (67%), Gaps = 3/158 (1%)

Query: 17  MRILMVGLDNSGKTTIVLKIN-GEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRS 75
           MRILMVGLD +GKTTI+ K+  GE  + I PT+GFN++TV Y+  +  +WDVGGQ  IR 
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKIRP 59

Query: 76  YWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP 135
            WR+YF+ T GL++VVDS+D  R+ + + EL  +L E+ L  A LL+ ANKQD+  A++ 
Sbjct: 60  LWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSA 119

Query: 136 TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173
            E+   L L ++ + R+W I    A +G+GL EG DWL
Sbjct: 120 AEVTDKLGLHSL-RNRNWYIQATCATSGDGLYEGLDWL 156

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score =  172 bits (438), Expect = 1e-55
 Identities = 70/154 (45%), Positives = 105/154 (68%), Gaps = 1/154 (0%)

Query: 18  RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY-TLNIWDVGGQRTIRSY 76
           ++L++GLD++GK+T++ K+   +     PT+GFN++ +  +K+ +L +WDVGGQ  +R+ 
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTV 60

Query: 77  WRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPT 136
           W+ Y E TDGLV+VVDSSD  RLD+ + EL ++LK E + G  +++LANKQD+ GALT  
Sbjct: 61  WKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAE 120

Query: 137 EIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF 170
           EI +   L+     R W +  CSA TGEGL E F
Sbjct: 121 EITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score =  171 bits (435), Expect = 7e-55
 Identities = 83/168 (49%), Positives = 114/168 (67%), Gaps = 3/168 (1%)

Query: 14  EKEMRILMVGLDNSGKTTIVLKIN-GEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRT 72
           +KEMRILMVGLD +GKTTI+ K+  GE  + I PT+GFN++TV Y+  +  +WDVGGQ  
Sbjct: 15  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDK 73

Query: 73  IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132
           IR  WR+YF+ T GL++VVDS+D  R+ + + EL  +L E+ L  A LL+ ANKQD+  A
Sbjct: 74  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133

Query: 133 LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           +   EI   L L ++ + RHW I    A +GEGL EG DWL  +IA++
Sbjct: 134 MNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180

Length = 181

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score =  169 bits (430), Expect = 3e-54
 Identities = 72/162 (44%), Positives = 104/162 (64%), Gaps = 1/162 (0%)

Query: 14  EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTI 73
            KE ++++VGLDN+GKTTI+ +    +    SPT+G N++ + Y+     +WD+GGQ ++
Sbjct: 13  RKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESL 72

Query: 74  RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL 133
           RS W  Y+  TD ++ V+DS+D  RL   K EL  +L  E L  A LL+LANKQD+ GA+
Sbjct: 73  RSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM 132

Query: 134 TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ 175
           TP EI++ L L ++ +   W I GC A TGEGL EG DW+  
Sbjct: 133 TPAEISESLGLTSI-RDHTWHIQGCCALTGEGLPEGLDWIAS 173

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score =  162 bits (411), Expect = 3e-51
 Identities = 78/166 (46%), Positives = 112/166 (67%), Gaps = 3/166 (1%)

Query: 15  KEMRILMVGLDNSGKTTIVLKIN-GEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTI 73
           KEMRILMVGLD +GKTTI+ K+  GE  + I PT+GFN++TVTY+  +  +WDVGGQ  I
Sbjct: 12  KEMRILMVGLDAAGKTTILYKLKLGESVTTI-PTIGFNVETVTYKNISFTVWDVGGQDKI 70

Query: 74  RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL 133
           R  WR+Y+  T GL++VVDS+D  R+D+ + EL  +L E+ L  A +L+ ANKQD+  A+
Sbjct: 71  RPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM 130

Query: 134 TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179
              EI + L L ++ + R+W I    A +G+GL EG  WL  ++ +
Sbjct: 131 KAAEITEKLGLHSI-RDRNWYIQPTCATSGDGLYEGLTWLSNNLKN 175

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score =  142 bits (360), Expect = 1e-43
 Identities = 69/162 (42%), Positives = 103/162 (63%)

Query: 18  RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYW 77
           R++ +GLD +GKTTI+ K+  ++     PT+GFN++TV Y+     IWDVGG+  +R  W
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLW 60

Query: 78  RNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTE 137
           ++Y+  T  +V+V+DSS   R+ +   EL  LL E+ L  A LLI ANKQD+ GAL+  E
Sbjct: 61  KHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEE 120

Query: 138 IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179
           + ++L+L  +   R W I GC A +G GL EG DWL + + +
Sbjct: 121 MTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 162

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score =  142 bits (360), Expect = 1e-43
 Identities = 63/165 (38%), Positives = 94/165 (56%), Gaps = 9/165 (5%)

Query: 19  ILMVGLDNSGKTTI--------VLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQ 70
           +L++GLDN+GKTT              G + S I+PT+G NI T+   K  L  WD+GGQ
Sbjct: 2   VLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLNIGTIEVGKARLMFWDLGGQ 61

Query: 71  RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130
             +RS W  Y+ ++ G+++V+DS+D  R ++ K   + ++  E L G  LL+LANKQD+ 
Sbjct: 62  EELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANKQDLP 121

Query: 131 GALTPTEIAKVLNLEAMD-KTRHWKIVGCSAYTGEGLLEGFDWLV 174
            AL+  EI +V +        R   +   SA  GEG+ EG +WLV
Sbjct: 122 DALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEGIEWLV 166

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score =  136 bits (344), Expect = 3e-41
 Identities = 65/161 (40%), Positives = 94/161 (58%), Gaps = 5/161 (3%)

Query: 19  ILMVGLDNSGKTTIV--LKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSY 76
           IL++GLDNSGKTTI+  LK +   +  I PT+GFN+++      +   +D+ GQ   R  
Sbjct: 2   ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGNLSFTAFDMSGQGKYRGL 61

Query: 77  WRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL--LILANKQDINGALT 134
           W +Y++   G+++V+DSSD  R+   K EL+ LL    +    +  L  ANK D+  ALT
Sbjct: 62  WEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKMDLPDALT 121

Query: 135 PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ 175
             +I ++L LE + K + W I   SA TGEGL EG DWL  
Sbjct: 122 AVKITQLLCLENI-KDKPWHIFASSALTGEGLDEGVDWLQA 161

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score =  133 bits (335), Expect = 1e-39
 Identities = 63/169 (37%), Positives = 98/169 (57%), Gaps = 5/169 (2%)

Query: 17  MRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTV-----TYQKYTLNIWDVGGQR 71
           + I+M+GLD++GKTT++ ++   +     PT GFN + +       +  T + WDVGGQ 
Sbjct: 4   LHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQE 63

Query: 72  TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131
            +R  W++Y   TDG+V+VVDS D+ R+++ K EL  + K     G  +L+LANKQD+  
Sbjct: 64  KLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDLPN 123

Query: 132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           AL  +E+ K+L L  +  +  W +    A  GEGL EG + L + I  R
Sbjct: 124 ALPVSEVEKLLALHELSSSTPWHVQPACAIIGEGLQEGLEKLYEMILKR 172

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score =  129 bits (327), Expect = 2e-38
 Identities = 58/174 (33%), Positives = 92/174 (52%), Gaps = 11/174 (6%)

Query: 15  KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR 74
           KE +I+ +GLDN+GKTT++  +  +  +   PTL    + +T        +D+GG    R
Sbjct: 18  KEAKIVFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNVKFTTFDLGGHEQAR 77

Query: 75  SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT 134
             W++YF + DG+V++VD++D  R  + K ELD+LL +E L+   +LIL NK D  GA++
Sbjct: 78  RVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVPILILGNKIDKPGAVS 137

Query: 135 PTEIAKVLNLEAM-----------DKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
             E+ + L L                 R  ++  CS    +G  EGF WL Q +
Sbjct: 138 EEELREALGLYGTTTGKGGVSLKVSNIRPVEVFMCSVVKRQGYGEGFRWLSQYL 191

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score =  127 bits (321), Expect = 8e-38
 Identities = 66/163 (40%), Positives = 96/163 (58%), Gaps = 8/163 (4%)

Query: 19  ILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWR 78
           +L VGLDN+GKTT+V  + GE    ++PT+GF    +   KY + I+D+GG    R  W 
Sbjct: 2   LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWV 61

Query: 79  NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEI 138
           NY+ +  GLV+VVDSSD  R+ + K  L  LL+  R+SG  +L+LANKQD   AL   ++
Sbjct: 62  NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADV 121

Query: 139 AKVLNLE-AMDKTR-HWKIVGCSAYTGEG------LLEGFDWL 173
            + L+LE  +++ +    I  CSA  G G      ++EG  WL
Sbjct: 122 IEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWL 164

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score =  121 bits (305), Expect = 2e-35
 Identities = 61/158 (38%), Positives = 92/158 (58%), Gaps = 2/158 (1%)

Query: 19  ILMVGLDNSGKTTIVLKINGEDTSVIS-PTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYW 77
           I +VGL NSGKTT+V  I     S  + PT+GFN++ VT    T+ +WD+GGQ   RS W
Sbjct: 2   ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTKGNVTIKVWDLGGQPRFRSMW 61

Query: 78  RNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTE 137
             Y    + +V+VVD++D  +L+  K EL +LL++  L G  LL+L NK D+ GAL+  E
Sbjct: 62  ERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDE 121

Query: 138 IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ 175
           + + +NL+++   R       SA     +    DWL++
Sbjct: 122 LIEQMNLKSI-TDREVSCYSISAKEKTNIDIVLDWLIK 158

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score =  121 bits (304), Expect = 3e-35
 Identities = 52/145 (35%), Positives = 83/145 (57%), Gaps = 3/145 (2%)

Query: 19  ILMVGLDNSGKTTIVLKINGEDT-SVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYW 77
           IL++GLD +GKT+++  ++ E +   + PT GFN   +  Q   + + ++GG + +R YW
Sbjct: 2   ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYW 61

Query: 78  RNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTE 137
           + Y   + GL++VVDS+D  RL   + EL  LL+        L++LANKQD+  A +  E
Sbjct: 62  KRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQE 119

Query: 138 IAKVLNLEAMDKTRHWKIVGCSAYT 162
           I K L LE + + R W + G S   
Sbjct: 120 IHKELELEPIARGRRWILQGTSLDD 144

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases

 Score =  108 bits (270), Expect = 6e-30
 Identities = 55/170 (32%), Positives = 84/170 (49%), Gaps = 6/170 (3%)

Query: 14  EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTI 73
            K  +IL +GLDN+GKTT++  +  +  +   PT     + +         +D+GG +  
Sbjct: 15  NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQA 74

Query: 74  RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL 133
           R  W++YF + +G+V++VD+ D  R  + K ELD LL +E L+    LIL NK D   A 
Sbjct: 75  RRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA 134

Query: 134 TPTEIAKVLNL------EAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
           +  E+   L L      +     R  ++  CS     G  EGF WL Q I
Sbjct: 135 SEDELRYALGLTNTTTGKGKVGVRPVEVFMCSVVRRMGYGEGFKWLSQYI 184

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 90.0 bits (223), Expect = 1e-22
 Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 18/187 (9%)

Query: 13  KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKTVTY----QKYTLNIWDV 67
             KE +I+++G    GKTT++ ++ G++      PT+G      T     +   L +WD 
Sbjct: 2   FMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDT 61

Query: 68  GGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127
            GQ   RS    Y+   +G++ V DS+     D+   E    L+E       +L++ NK 
Sbjct: 62  AGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKI 121

Query: 128 DINGALTPTEIAKVLNLEAMDKTR-----------HWKIVGCSA--YTGEGLLEGFDWLV 174
           D+    + +E         +               +  ++  SA   TG  + E F  L+
Sbjct: 122 DLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELL 181

Query: 175 QDIASRI 181
           + +   I
Sbjct: 182 RKLLEEI 188

Length = 219

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 86.4 bits (214), Expect = 8e-22
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 17/165 (10%)

Query: 22  VGLDNSGKTTIVLKINGEDTSVIS----PTLGFNIKTVTYQ--KYTLNIWDVGGQRTIRS 75
           VG    GK++++  + G +   +S     T   ++        K  L + D  G      
Sbjct: 3   VGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEFGG 62

Query: 76  YW-----RNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130
                  R      D ++ VVDS+D    +D K+ +   L++E   G  ++++ NK D+ 
Sbjct: 63  LGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKE---GIPIILVGNKIDL- 118

Query: 131 GALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ 175
             L   E+ ++L LE + K     +   SA TGEG+ E F+ L++
Sbjct: 119 --LEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 67.4 bits (165), Expect = 1e-14
 Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 14/164 (8%)

Query: 16  EMRILMVGLDNSGKTTIVLKINGEDTSVIS--PTLGFNIKTVTYQ----KYTLNIWDVGG 69
           E++I++VG  N GK+T++ ++ G   S+    P    N  T   +     Y  N+ D  G
Sbjct: 1   EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60

Query: 70  QRTIRSYWRNYFEQTDGLVWVVDSSDLR-RLDDCKMELDNLLKEERLSGASLLILANKQD 128
           Q    +  R Y+   +  + V D   L   +++   +    +     SG  ++++ NK D
Sbjct: 61  QEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKID 120

Query: 129 INGALTPTEIA-KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFD 171
           +  A   T +A     L              SA TG+ +   F 
Sbjct: 121 LRDAKLKTHVAFLFAKLNGEPIIP------LSAETGKNIDSAFK 158

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 60.9 bits (149), Expect = 3e-12
 Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 20/169 (11%)

Query: 17  MRILMVGLDNS-GKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQ 70
            +I+++G D+  GKT+++L+ ++ + +     T+G  F  KT+    +K  L IWD  GQ
Sbjct: 1   FKIVLIG-DSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQ 59

Query: 71  ---RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127
              R+I     +Y+    G + V D ++    ++    L N LKE       ++++ NK 
Sbjct: 60  ERFRSIT---SSYYRGAHGAILVYDVTNRESFENLDKWL-NELKEYAPPNIPIILVGNKS 115

Query: 128 DINGA-LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ 175
           D+       TE A     +   K         SA TGE + E F+ L +
Sbjct: 116 DLEDERQVSTEEA-----QQFAKENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 37/175 (21%), Positives = 69/175 (39%), Gaps = 22/175 (12%)

Query: 11  KKKEKEMRILMVGLDNSGKTTIVLKIN---GEDTSVISPTL---GFNIKTVT-------- 56
             K  E +I+++G   +GKTT V  ++      T   + ++   G    TV         
Sbjct: 5   ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL 64

Query: 57  YQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLS 116
            +   ++++   GQ   +  W        G + +VDSS        ++    +      +
Sbjct: 65  DEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEI----IDFLTSRN 120

Query: 117 GASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFD 171
              +++  NKQD+  AL P +I + L LE +       ++   A  GEG  +  D
Sbjct: 121 PIPVVVAINKQDLFDALPPEKIREALKLELLSV----PVIEIDATEGEGARDQLD 171

Length = 187

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 10/165 (6%)

Query: 18  RILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQRT 72
           +IL++G    GK++++L+  +      +S T+G  F +KTVT   +K  L IWD  GQ  
Sbjct: 2   KILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQER 61

Query: 73  IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132
            R+   +Y+    G++ V D +     D+    L+ L        A  +++ NK D    
Sbjct: 62  FRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKENR 121

Query: 133 LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
               E  +        +  +   +  SA T  G+ + F+ LV+ I
Sbjct: 122 EVTREEGQ-----KFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 50.2 bits (121), Expect = 3e-08
 Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 26/173 (15%)

Query: 18  RILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQ-- 70
           ++++VG    GK++++++    +      PT+G  F  KT+    +   L IWD  GQ  
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 71  -RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
            R +R     Y+    G + V D +     ++ K  L+ +L+        ++++ NK D+
Sbjct: 61  FRALRP---LYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHAD-ENVPIVLVGNKCDL 116

Query: 130 NG--ALTPTE---IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
                ++  E   +AK L L  M+          SA T E + E F+ L ++I
Sbjct: 117 EDQRVVSTEEGEALAKELGLPFME---------TSAKTNENVEEAFEELAREI 160

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 33/162 (20%), Positives = 65/162 (40%), Gaps = 31/162 (19%)

Query: 22  VGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTY-----QKYTLNIWDVGG------- 69
            G  N GK++++  + G++  ++SP  G     V           + + D  G       
Sbjct: 3   FGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRKEWELLPLGPVVLIDTPGLDEEGGL 62

Query: 70  -----QRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILA 124
                +   +       ++ D ++ VVD SDL  +     E +  L   R  G  +L++ 
Sbjct: 63  GRERVEEARQV-----ADRADLVLLVVD-SDLTPV-----EEEAKLGLLRERGKPVLLVL 111

Query: 125 NKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL 166
           NK D+   +  +E  ++L    ++      ++  SA  GEG+
Sbjct: 112 NKIDL---VPESEEEELLRERKLELLPDLPVIAVSALPGEGI 150

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 12/119 (10%)

Query: 18  RILMVGLDNSGKTTIVLKINGEDTSV-----ISPTLGFNIKTVTYQKYTLNIWDVGGQRT 72
           +++++G   SGK++++ ++ G +           TL  +   V      LNIWD GG+  
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 73  IRSYWRNYFEQTDGLVWVVDSSD---LRRLDDCKMELDNLLKEERLSGASLLIL-ANKQ 127
           ++     + +  D ++ V D +D   L  +      L NL    +L G   +IL  NK 
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNL---RKLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 44.5 bits (105), Expect = 4e-06
 Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 10/115 (8%)

Query: 60  YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS 119
           ++L +WD  GQ   +     Y+     ++ V D +D+  L+  +  L++ LKE   S   
Sbjct: 49  FSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVL 108

Query: 120 LLILANKQDINGALTPTEIAKV----LNLEAMDKTRHWKIVGCSAYTGEGLLEGF 170
           L ++  K+D+    +P + A +    + L    K  +W +   SA TGE + + F
Sbjct: 109 LFLVGTKKDL---SSPAQYALMEQDAIKLAREMKAEYWAV---SALTGENVRDFF 157

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 45.0 bits (106), Expect = 4e-06
 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 4/79 (5%)

Query: 18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLG--FNIK--TVTYQKYTLNIWDVGGQRTI 73
          +IL++G    GK+++++         ++PT+G  F IK  TV  ++  L IWD  GQ   
Sbjct: 16 KILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF 75

Query: 74 RSYWRNYFEQTDGLVWVVD 92
          R+   +Y+    G++ V D
Sbjct: 76 RTLTSSYYRNAQGIILVYD 94

Length = 211

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 43.7 bits (104), Expect = 7e-06
 Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 22/172 (12%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQ- 70
            +I+++G    GK++++ +  +G+ +     T+G  F  KT+    ++  L IWD  GQ 
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 71  --RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127
             R+I  SY+R       G + V D ++    ++ +  L   L+E       ++++ NK 
Sbjct: 61  RFRSITSSYYRG----AVGALLVYDITNRESFENLENWLKE-LREYASPNVVIMLVGNKS 115

Query: 128 DINGALTPTEIAKVLNLEAMDKTRHWKIVG--CSAYTGEGLLEGFDWLVQDI 177
           D+       E  +V   EA        +     SA T   + E F+ L ++I
Sbjct: 116 DLE------EQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREI 161

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit

 Score = 44.6 bits (106), Expect = 8e-06
 Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 10/94 (10%)

Query: 46  PTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR-------- 97
            T G       ++     ++DVGGQR+ R  W + FE    +++VV  S+          
Sbjct: 154 KTTGIIETKFDFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDDS 213

Query: 98  --RLDDCKMELDNLLKEERLSGASLLILANKQDI 129
             RL++     + +          +++  NK+D+
Sbjct: 214 TNRLEESLNLFEEICNSPWFKNTPIILFLNKKDL 247

G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329

>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP)

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 12/142 (8%)

Query: 19  ILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVT---YQKYTLNIWDVGGQRTIRS 75
           +L++G  +SGKT +  K+          ++  N+ +      +   L + DV G   +R 
Sbjct: 3   VLLLGPSDSGKTALFTKLTTGKVRSTVTSIEPNVASFYSNSSKGKKLTLVDVPGHEKLRD 62

Query: 76  -YWRNYFEQTDGLVWVVDSSDLRRLDDCK----MELDNLLKEERLSGA-SLLILANKQDI 129
                       +V+VVDS+  ++  + +       D L   E++     +LI  NKQD+
Sbjct: 63  KLLEYLKASLKAIVFVVDSATFQK--NIRDVAEFLYDILTDLEKIKNKIPILIACNKQDL 120

Query: 130 NGALTPTEIAKVLNLEAMDKTR 151
             A    +I ++L  E ++  R
Sbjct: 121 FTAKPAKKIKELLEKE-INTLR 141

Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 26/175 (14%)

Query: 17  MRILMVGLDNSGKTTIVLK-----INGEDTSVISPTLGFNIKTVTYQ--KYTLNIWDVGG 69
            +++++G    GKT++VL+      N +  S       F  KTV     +  L IWD  G
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQA--SFFQKTVNIGGKRIDLAIWDTAG 58

Query: 70  QRTIRS----YWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILAN 125
           Q    +    Y+R+     DG + V D +D       K  +   LK+ R +  SL+I+ N
Sbjct: 59  QERYHALGPIYYRD----ADGAILVYDITDADSFQKVKKWIKE-LKQMRGNNISLVIVGN 113

Query: 126 KQDING--ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178
           K D+     ++ +E       E   K+   K    SA TG+G+ E F  L + + 
Sbjct: 114 KIDLERQRVVSKSEA------EEYAKSVGAKHFETSAKTGKGIEELFLSLAKRMI 162

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 40.7 bits (96), Expect = 9e-05
 Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 10/121 (8%)

Query: 17  MRILMVGLDNSGKTTIVLKINGED---TSVISPTLG--FNIKTVTYQ--KYTLNIWDVGG 69
            ++L++G    GK+ ++L+ + ED    S IS T+G  F I+T+     K  L IWD  G
Sbjct: 4   FKLLLIGDSGVGKSCLLLRFS-EDSFNPSFIS-TIGIDFKIRTIELDGKKIKLQIWDTAG 61

Query: 70  QRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
           Q   R+   +Y+    G++ V D +D +  ++ K  + N + E        +++ NK D+
Sbjct: 62  QERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRN-IDEHASEDVERMLVGNKCDM 120

Query: 130 N 130
            
Sbjct: 121 E 121

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 18/174 (10%)

Query: 18  RILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTYQ---KYTLNIWDVGGQR 71
           R++++G    GK++++ +   G    V  PT+G  F  + +  +   +  L +WD  GQ 
Sbjct: 4   RLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63

Query: 72  TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERL----SGASLLILANKQ 127
             RS  R+Y+  + G++ V D ++    +       + L+E R          +++ +K 
Sbjct: 64  RFRSITRSYYRNSVGVLLVFDITNRESFEHVH----DWLEEARSHIQPHRPVFILVGHKC 119

Query: 128 DINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
           D+      T        E + K    K +  SA TG+ + E F+ L Q+I  RI
Sbjct: 120 DLESQRQVTREEA----EKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERI 169

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 20/125 (16%)

Query: 18  RILMVGLDNSGKTTIVLKINGEDT---SVISPTLG--FNIKTVTYQKYT--LNIWDVGGQ 70
           ++L++G    GK+ ++L+   +DT   S IS T+G  F I+T+     T  L IWD  GQ
Sbjct: 4   KLLLIGDSGVGKSCLLLRF-ADDTYTESYIS-TIGVDFKIRTIELDGKTVKLQIWDTAGQ 61

Query: 71  ---RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL--LILAN 125
              RTI S   +Y+    G++ V D +D    ++ K  L  +   +R +  ++  L++ N
Sbjct: 62  ERFRTITS---SYYRGAHGIIIVYDVTDQESFNNVKQWLQEI---DRYASENVNKLLVGN 115

Query: 126 KQDIN 130
           K D+ 
Sbjct: 116 KCDLT 120

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta subunit

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 8/136 (5%)

Query: 18  RILMVGLDNSGKTTIVLKINGEDT--SVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRS 75
            +++ GL +SGKT++   +       +V S       K + ++ ++  + D  G   +R 
Sbjct: 5   AVIIAGLCDSGKTSLFTLLTTGTVKKTVTSQEPSAAYKYMLHKGFSFTLIDFPGHVKLRQ 64

Query: 76  YWRNYFEQTD---GLVWVVDSS-DLRRLDDCKMELDNLL--KEERLSGASLLILANKQDI 129
                 + +    G+V+VVDS+   + + D    L  +L   E   +G  +LI  NKQ+ 
Sbjct: 65  KLLETIKDSSSLRGIVFVVDSTAFPKEVTDTAEFLYEILSITELLKNGIDILIACNKQES 124

Query: 130 NGALTPTEIAKVLNLE 145
             A  P +I + L  E
Sbjct: 125 FTARPPKKIKQALEKE 140

The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 13/86 (15%)

Query: 18 RILMVGLDNSGKTTIVLKINGEDTSVISP-----TLG--FNIKTVTY--QKYTLNIWDVG 68
          +I+++G    GKT +V +     T  + P     T+G  F IKTV    +K  L IWD  
Sbjct: 9  KIVLIGNAGVGKTCLVRRF----TQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTA 64

Query: 69 GQRTIRSYWRNYFEQTDGLVWVVDSS 94
          GQ   RS  ++Y+   + L+   D +
Sbjct: 65 GQERFRSITQSYYRSANALILTYDIT 90

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 18/122 (14%)

Query: 18  RILMVGLDNSGKTTIVLKINGEDTSVISPTLG---FNIKTVTYQKYTLNIWDVGGQRT-- 72
           R+ +VG  N GK+T++  + G   +++S   G     I  V      + + D  G     
Sbjct: 1   RVALVGRPNVGKSTLINALTGAKVAIVSDYPGTTRDPILGVLGLGRQIILVDTPGLIEGA 60

Query: 73  --------IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILA 124
                      +      + D ++ VVD+S+    DD ++ L+ L   E+L    ++++ 
Sbjct: 61  SEGKGVEGFNRFLEAI-READLILLVVDASEGLTEDDEEI-LEEL---EKLPKKPIILVL 115

Query: 125 NK 126
           NK
Sbjct: 116 NK 117

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 18/123 (14%)

Query: 18  RILMVGLDNSGKTTIVLKI-NGEDTSVISPTLG--FNIKTVTYQ--KYTLNIWDVGGQRT 72
           +I+++G  N GKT +V +  +G  +     T+G  F +KT+  Q  +  L IWD  GQ  
Sbjct: 5   KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 64

Query: 73  IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNL---LKEERLSGAS---LLILANK 126
            R+  ++Y+   +G +   D +        +   +++   ++E    GAS   LL++ NK
Sbjct: 65  FRTITQSYYRSANGAIIAYDIT-------RRSSFESVPHWIEEVEKYGASNVVLLLIGNK 117

Query: 127 QDI 129
            D+
Sbjct: 118 CDL 120

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 8/118 (6%)

Query: 62  LNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLL 121
           LNI D  GQ    +   NYF   +G + V   +D+          + +L+ +      LL
Sbjct: 50  LNILDTAGQEDYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLL 109

Query: 122 ILANKQDINGALTPTEIAKVLNLEAMDKTRHWKI--VGCSAYTGEGLLEGFDWLVQDI 177
           ++ NK D+       +  +V   EA +    W +  V  SA T   + + F  LV++I
Sbjct: 110 LVGNKCDL------EDKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREI 161

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 38.8 bits (90), Expect = 5e-04
 Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 11/85 (12%)

Query: 50  FNIKTVTY--QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDC----K 103
           F IKTV    +K  L IWD  GQ    S    Y+    G++ V D +     DD     K
Sbjct: 37  FKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMK 96

Query: 104 MELDNLLKEERLSGASLLILANKQD 128
           M +D    E+    A LL++ NK D
Sbjct: 97  M-IDKYASED----AELLLVGNKLD 116

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 37.9 bits (89), Expect = 9e-04
 Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 26/166 (15%)

Query: 28  GKTTIVLKI-NGEDTSVISPTLG--FNIKTVTYQKYTLN--IWDVGGQRTIRS----YWR 78
           GK++IVL+    E +     T+G  F  +TV     T+   IWD  GQ   RS    Y+R
Sbjct: 13  GKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYR 72

Query: 79  NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILA-NKQDINGA-LTPT 136
                    + V D +     +  K  +  L  +E      ++ LA NK D+       T
Sbjct: 73  G----AAAAIVVYDITSEESFEKAKSWVKEL--QEHGPPNIVIALAGNKADLESKRQVST 126

Query: 137 EIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIY 182
           E A+    E          +  SA TGE + E F     +IA ++ 
Sbjct: 127 EEAQEYADEN-----GLLFMETSAKTGENVNELF----TEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206685 cd01898, Obg, Obg GTPase

 Score = 37.8 bits (89), Expect = 0.001
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 16/105 (15%)

Query: 82  EQTDGLVWVVDSSDLRRLDDCKMELDNLLKE-----ERLSGASLLILANKQDINGALTPT 136
           E+T  L+ V+D S     DD   + + +  E       L+    +++ NK D+   L   
Sbjct: 77  ERTRVLLHVIDLSGE---DDPVEDYETIRNELEAYNPGLAEKPRIVVLNKIDL---LDAE 130

Query: 137 EIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
           E  + L  E + + +  K+   SA TGEGL E    L++ +A  +
Sbjct: 131 ERFEKLK-ELLKELKGKKVFPISALTGEGLDE----LLKKLAKLL 170

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 8/62 (12%)

Query: 16 EMRILMVGLDNSGKTTIVLKINGE--DTSVISPTLGFNIKTVTYQ-----KYTLNIWDVG 68
          E ++++VG    GKT++  ++ GE  D    S T G N++          K  LN+WD G
Sbjct: 1  EAKLMLVGQGGVGKTSLCKQLIGEKFDGDESS-THGINVQDWKIPAPERKKIRLNVWDFG 59

Query: 69 GQ 70
          GQ
Sbjct: 60 GQ 61

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 7/81 (8%)

Query: 18 RILMVGLDNSGKTTIVLKI--NGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQR 71
          ++L++G    GK++++L+   N    S I+ T+G  F I+TV    ++  L IWD  GQ 
Sbjct: 8  KLLIIGDSGVGKSSLLLRFADNTFSGSYIT-TIGVDFKIRTVEINGERVKLQIWDTAGQE 66

Query: 72 TIRSYWRNYFEQTDGLVWVVD 92
            R+    Y+  T G++ V D
Sbjct: 67 RFRTITSTYYRGTHGVIVVYD 87

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 36.0 bits (83), Expect = 0.004
 Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 13/131 (9%)

Query: 44  ISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCK 103
           I    G  I  V  QK  L IWD  GQ   R+  R+Y+    G + V D +  RR     
Sbjct: 35  IGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT--RRS--TY 90

Query: 104 MELDNLLKEER-LSGASLLI--LANKQDINGALTPT-EIAKVLNLEAMDKTRHWKIVGCS 159
             L + L + R L+  + +I  + NK D+      T E AK               + CS
Sbjct: 91  NHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAK-----QFADENGLLFLECS 145

Query: 160 AYTGEGLLEGF 170
           A TGE + + F
Sbjct: 146 AKTGENVEDAF 156

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit

 Score = 36.8 bits (86), Expect = 0.004
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 10/94 (10%)

Query: 46  PTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSS--DLRRLDDCK 103
           PT G        +K    ++DVGGQR+ R  W + F+    +++ V  S  D    +D  
Sbjct: 170 PTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDES 229

Query: 104 ----MELDNLLKEER----LSGASLLILANKQDI 129
                E  NL +        +  S+++  NK D+
Sbjct: 230 TNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263

Subunit of G proteins that contains the guanine nucleotide binding site. Length = 342

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	185
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	100.0
PLN00223	181	ADP-ribosylation factor; Provisional	100.0
PTZ00133	182	ADP-ribosylation factor; Provisional	100.0
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	100.0
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	100.0
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	100.0
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	100.0
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	100.0
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	100.0
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	100.0
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	100.0
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	100.0
smart00178	184	SAR Sar1p-like members of the Ras-family of small	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.98
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.98
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.98
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.98
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.98
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.98
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.98
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.98
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.98
PTZ00369	189	Ras-like protein; Provisional	99.97
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.97
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.97
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.97
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.97
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.97
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.97
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.97
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.97
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.97
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.97
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.97
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.97
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.97
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.97
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.97
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.97
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.97
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.97
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.97
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.97
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.97
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.97
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.97
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.97
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.97
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.97
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.97
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.97
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.97
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.97
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.97
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.97
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.97
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.97
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.97
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.97
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.97
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.97
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.97
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.97
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.97
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.97
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.97
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.97
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.97
PLN03118	211	Rab family protein; Provisional	99.97
PLN03110	216	Rab GTPase; Provisional	99.97
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.97
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.97
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.96
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.96
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.96
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.96
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.96
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.96
PLN03108	210	Rab family protein; Provisional	99.96
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.96
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.96
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.96
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.96
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.96
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.96
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.96
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.96
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.96
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.96
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.96
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.96
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.96
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.96
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.96
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.96
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.96
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.95
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.95
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.95
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.95
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.95
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.95
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.95
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.95
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.94
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.94
KOG0395	196	consensus Ras-related GTPase [General function pre	99.94
PRK15494	339	era GTPase Era; Provisional	99.94
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.94
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.94
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.94
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.94
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.94
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.94
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.93
PRK12299	335	obgE GTPase CgtA; Reviewed	99.93
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.93
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.93
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.93
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.93
cd00881	189	GTP_translation_factor GTP translation factor fami	99.93
COG1159	298	Era GTPase [General function prediction only]	99.93
PRK03003	472	GTP-binding protein Der; Reviewed	99.93
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.93
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.92
PRK04213	201	GTP-binding protein; Provisional	99.92
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.92
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.92
PRK03003	472	GTP-binding protein Der; Reviewed	99.92
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.92
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.92
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.92
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.92
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.92
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.92
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.92
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.92
PRK00089	292	era GTPase Era; Reviewed	99.91
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.91
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.91
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.91
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.91
PRK12296	500	obgE GTPase CgtA; Reviewed	99.91
PRK11058	426	GTPase HflX; Provisional	99.91
PLN00023	334	GTP-binding protein; Provisional	99.91
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.9
PRK12298	390	obgE GTPase CgtA; Reviewed	99.9
PRK12297	424	obgE GTPase CgtA; Reviewed	99.9
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.9
COG1100	219	GTPase SAR1 and related small G proteins [General	99.9
PRK00093	435	GTP-binding protein Der; Reviewed	99.9
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.9
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.9
COG1160	444	Predicted GTPases [General function prediction onl	99.9
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.89
PRK05306	787	infB translation initiation factor IF-2; Validated	99.89
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.89
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.89
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.89
CHL00189	742	infB translation initiation factor 2; Provisional	99.89
PRK00093	435	GTP-binding protein Der; Reviewed	99.89
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.89
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.89
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.88
PTZ00099	176	rab6; Provisional	99.88
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.88
COG1160	444	Predicted GTPases [General function prediction onl	99.88
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.88
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.88
COG0486	454	ThdF Predicted GTPase [General function prediction	99.87
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.87
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.87
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.87
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.86
PRK05433	600	GTP-binding protein LepA; Provisional	99.86
PRK12317	425	elongation factor 1-alpha; Reviewed	99.86
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.86
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.86
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.86
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.86
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.85
COG0218	200	Predicted GTPase [General function prediction only	99.85
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.85
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.85
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.85
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.84
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.84
COG2229	187	Predicted GTPase [General function prediction only	99.84
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.84
PRK10218	607	GTP-binding protein; Provisional	99.84
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.84
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.83
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.83
PRK04004	586	translation initiation factor IF-2; Validated	99.83
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.83
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.83
COG2262	411	HflX GTPases [General function prediction only]	99.83
PRK12735	396	elongation factor Tu; Reviewed	99.82
PRK12736	394	elongation factor Tu; Reviewed	99.82
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.81
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.81
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.8
CHL00071	409	tufA elongation factor Tu	99.8
PLN03126	478	Elongation factor Tu; Provisional	99.8
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.8
COG1084	346	Predicted GTPase [General function prediction only	99.8
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.8
PRK00049	396	elongation factor Tu; Reviewed	99.79
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.79
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.78
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.78
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.78
COG1163	365	DRG Predicted GTPase [General function prediction	99.78
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.78
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.78
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.78
PTZ00141	446	elongation factor 1- alpha; Provisional	99.77
PRK13351	687	elongation factor G; Reviewed	99.77
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.77
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.77
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.77
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.77
PLN03127	447	Elongation factor Tu; Provisional	99.77
PLN00043	447	elongation factor 1-alpha; Provisional	99.77
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.76
KOG0090	238	consensus Signal recognition particle receptor, be	99.76
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.76
KOG1673	205	consensus Ras GTPases [General function prediction	99.76
KOG1145	683	consensus Mitochondrial translation initiation fac	99.76
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.75
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.74
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.74
COG0536	369	Obg Predicted GTPase [General function prediction	99.74
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.74
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.73
PRK12739	691	elongation factor G; Reviewed	99.73
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.72
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.72
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.71
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.71
PRK00007	693	elongation factor G; Reviewed	99.71
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.7
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.7
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.69
PRK09602	396	translation-associated GTPase; Reviewed	99.68
PRK12740	668	elongation factor G; Reviewed	99.66
PRK09866	741	hypothetical protein; Provisional	99.66
COG3596	296	Predicted GTPase [General function prediction only	99.65
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.65
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.62
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.62
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.6
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.6
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.6
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.59
PRK13768	253	GTPase; Provisional	99.59
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.58
PRK14845	1049	translation initiation factor IF-2; Provisional	99.57
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.57
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.56
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.56
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.56
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.54
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.52
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.52
PTZ00416	836	elongation factor 2; Provisional	99.52
PTZ00258	390	GTP-binding protein; Provisional	99.5
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.48
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.48
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.45
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.44
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.43
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.42
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.42
PRK07560	731	elongation factor EF-2; Reviewed	99.41
PRK09601	364	GTP-binding protein YchF; Reviewed	99.41
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.4
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.4
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.4
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.38
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.38
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.35
KOG0410	410	consensus Predicted GTP binding protein [General f	99.35
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.34
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.34
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.34
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.34
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.34
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.32
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.3
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	99.29
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.28
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.28
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.27
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.26
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.26
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.23
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.22
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.21
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.2
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	99.2
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.19
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.19
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.18
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.16
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.12
KOG0099	379	consensus G protein subunit Galphas, small G prote	99.12
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.1
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.1
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.07
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.06
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.05
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.05
COG5258	527	GTPBP1 GTPase [General function prediction only]	99.01
PRK12289	352	GTPase RsgA; Reviewed	99.0
KOG2486	320	consensus Predicted GTPase [General function predi	98.94
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.93
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.93
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.93
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.93
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.9
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.88
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	98.88
PRK00098	298	GTPase RsgA; Reviewed	98.87
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.87
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.86
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.86
COG1161	322	Predicted GTPases [General function prediction onl	98.85
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.84
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.83
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.83
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.82
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.82
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.82
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.81
PRK12288	347	GTPase RsgA; Reviewed	98.8
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.79
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.78
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.77
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.75
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.74
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.74
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.73
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.7
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.7
KOG1143	591	consensus Predicted translation elongation factor	98.7
KOG0460	449	consensus Mitochondrial translation elongation fac	98.69
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.58
PRK14974	336	cell division protein FtsY; Provisional	98.57
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.56
PRK10416	318	signal recognition particle-docking protein FtsY;	98.55
PRK12288	347	GTPase RsgA; Reviewed	98.55
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.54
PRK13796	365	GTPase YqeH; Provisional	98.54
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.52
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.51
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.49
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.49
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.47
PRK12289	352	GTPase RsgA; Reviewed	98.45
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.45
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.44
PRK13796	365	GTPase YqeH; Provisional	98.38
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.35
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.35
cd03112	158	CobW_like The function of this protein family is u	98.3
PRK01889	356	GTPase RsgA; Reviewed	98.29
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.27
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.27
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.25
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.25
PRK00098	298	GTPase RsgA; Reviewed	98.23
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.14
COG1162	301	Predicted GTPases [General function prediction onl	98.12
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.12
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.1
cd03114	148	ArgK-like The function of this protein family is u	98.1
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	98.08
COG3523	1188	IcmF Type VI protein secretion system component Va	98.08
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.04
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.03
KOG2484	435	consensus GTPase [General function prediction only	98.02
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.99
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.96
PRK13695	174	putative NTPase; Provisional	97.94
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.94
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.92
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.92
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.9
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.9
COG0523	323	Putative GTPases (G3E family) [General function pr	97.9
PRK04195	482	replication factor C large subunit; Provisional	97.85
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.84
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.83
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.82
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.82
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.82
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.81
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.81
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.81
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.81
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.79
PRK10867	433	signal recognition particle protein; Provisional	97.79
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.78
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.77
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.74
PRK08118	167	topology modulation protein; Reviewed	97.72
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.72
TIGR00959	428	ffh signal recognition particle protein. This mode	97.71
KOG1533	290	consensus Predicted GTPase [General function predi	97.7
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.7
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.7
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.67
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.67
PRK07261	171	topology modulation protein; Provisional	97.67
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.66
PF05729	166	NACHT: NACHT domain	97.63
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.61
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	97.61
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.61
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.59
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.59
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.59
COG1162	301	Predicted GTPases [General function prediction onl	97.58
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.58
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	97.58
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.57
cd03246	173	ABCC_Protease_Secretion This family represents the	97.56
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.56
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.55
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.54
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	97.53
COG4525	259	TauB ABC-type taurine transport system, ATPase com	97.53
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.52
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	97.51
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.5
KOG0781	587	consensus Signal recognition particle receptor, al	97.5
PF00004	132	AAA: ATPase family associated with various cellula	97.49
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.49
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.48
cd03116	159	MobB Molybdenum is an essential trace element in t	97.46
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.46
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.45
PRK00411	394	cdc6 cell division control protein 6; Reviewed	97.45
smart00382	148	AAA ATPases associated with a variety of cellular	97.45
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.44
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.43
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.43
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.42
PRK05480	209	uridine/cytidine kinase; Provisional	97.41
PRK14530	215	adenylate kinase; Provisional	97.41
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.41
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.4
PRK01889	356	GTPase RsgA; Reviewed	97.4
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	97.4
PRK03839	180	putative kinase; Provisional	97.4
PRK06217	183	hypothetical protein; Validated	97.38
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.38
PRK08233	182	hypothetical protein; Provisional	97.38
PLN03025	319	replication factor C subunit; Provisional	97.37
PRK14738	206	gmk guanylate kinase; Provisional	97.37
cd03111	106	CpaE_like This protein family consists of proteins	97.37
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.36
PRK06547	172	hypothetical protein; Provisional	97.35
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.35
COG1161	322	Predicted GTPases [General function prediction onl	97.35
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	97.34
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.33
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.33
KOG4181	491	consensus Uncharacterized conserved protein [Funct	97.33
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.33
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.33
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.32
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.32
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.32
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.32
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.31
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.31
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.31

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=100.00  E-value=6.3e-37  Score=200.85  Aligned_cols=184  Identities=67%  Similarity=1.133  Sum_probs=174.6

Q ss_pred             CChHHHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhh
Q 029920            1 MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNY   80 (185)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~   80 (185)
                      ||+.++++.++.+++.++|.++|..|+||||++++|.+.......||.++..+...+.++++++||.+|+..++..|..|
T Consensus         1 mg~lsilrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nY   80 (185)
T KOG0073|consen    1 MGLLSILRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNY   80 (185)
T ss_pred             CcHHHHHHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecc
Q 029920           81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSA  160 (185)
Q Consensus        81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (185)
                      ++.+|++|+|+|.+|+.++++....++..+......+.|+++++||.|+..+...+++...+..+.+.+.++++++.||+
T Consensus        81 festdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~  160 (185)
T KOG0073|consen   81 FESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSA  160 (185)
T ss_pred             hhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEec
Confidence            99999999999999999999999999999887777789999999999999999999999999988887779999999999


Q ss_pred             cCCCCHHHHHHHHHHHHhhhcccC
Q 029920          161 YTGEGLLEGFDWLVQDIASRIYLL  184 (185)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~~~~~~~  184 (185)
                      .+|.++.+-++|+++.+.++...+
T Consensus       161 ~tge~l~~gidWL~~~l~~r~~~~  184 (185)
T KOG0073|consen  161 VTGEDLLEGIDWLCDDLMSRLFTL  184 (185)
T ss_pred             cccccHHHHHHHHHHHHHHHhccc
Confidence            999999999999999988766544

>PLN00223 ADP-ribosylation factor; Provisional

Probab=100.00  E-value=2.6e-35  Score=205.76  Aligned_cols=179  Identities=46%  Similarity=0.822  Sum_probs=148.9

Q ss_pred             CChH-HHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHh
Q 029920            1 MGLL-SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN   79 (185)
Q Consensus         1 ~~~~-~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~   79 (185)
                      ||.. +......-.++.+||+++|++|||||||++++..+.+..+.||.+.....+..++..+.+||+||++.++.++..
T Consensus         1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~   80 (181)
T PLN00223          1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH   80 (181)
T ss_pred             CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence            7743 333333335667999999999999999999998877777778888877778888899999999999999999999


Q ss_pred             hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeec
Q 029920           80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCS  159 (185)
Q Consensus        80 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (185)
                      +++++|++|+|+|+++++++..+..++..++......+.|+++++||+|+.......++...++...... ..+.++++|
T Consensus        81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~-~~~~~~~~S  159 (181)
T PLN00223         81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ-RHWYIQSTC  159 (181)
T ss_pred             HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCC-CceEEEecc
Confidence            9999999999999999999999988888887654456799999999999987777777777666433322 456788999


Q ss_pred             ccCCCCHHHHHHHHHHHHhhh
Q 029920          160 AYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~~  180 (185)
                      |++|+|++++|++|.+.+.++
T Consensus       160 a~~g~gv~e~~~~l~~~~~~~  180 (181)
T PLN00223        160 ATSGEGLYEGLDWLSNNIANK  180 (181)
T ss_pred             CCCCCCHHHHHHHHHHHHhhc
Confidence            999999999999999987654

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=100.00  E-value=7.2e-35  Score=203.73  Aligned_cols=180  Identities=46%  Similarity=0.842  Sum_probs=148.6

Q ss_pred             CCh-HHHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHh
Q 029920            1 MGL-LSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN   79 (185)
Q Consensus         1 ~~~-~~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~   79 (185)
                      ||. .+++.+....+..+||+++|++|||||||++++..+.+..+.+|.+.....+...+..+.+|||||++.+...+..
T Consensus         1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~   80 (182)
T PTZ00133          1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRH   80 (182)
T ss_pred             CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence            773 4455554445667999999999999999999998777766778888777777788899999999999999999999


Q ss_pred             hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeec
Q 029920           80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCS  159 (185)
Q Consensus        80 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (185)
                      +++.+|++|+|+|+++++++.....++..++......+.|+++|+||.|+.+.....++...++...... ..++++++|
T Consensus        81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~-~~~~~~~~S  159 (182)
T PTZ00133         81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQ-RNWYIQGCC  159 (182)
T ss_pred             HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccC-CcEEEEeee
Confidence            9999999999999999999999888888877654445789999999999976656666666666543333 456788999


Q ss_pred             ccCCCCHHHHHHHHHHHHhhhc
Q 029920          160 AYTGEGLLEGFDWLVQDIASRI  181 (185)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~~~  181 (185)
                      |++|.|++++|++|.+.+.+++
T Consensus       160 a~tg~gv~e~~~~l~~~i~~~~  181 (182)
T PTZ00133        160 ATTAQGLYEGLDWLSANIKKSM  181 (182)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999887764

>cd04149 Arf6 Arf6 subfamily

Probab=100.00  E-value=2.4e-34  Score=198.76  Aligned_cols=161  Identities=45%  Similarity=0.858  Sum_probs=137.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDS   93 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   93 (185)
                      .+.++|+++|++|+|||||++++..+.+..+.+|.+.....+....+.+.+|||||++.+...+..+++.+|++++|||+
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~   86 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDS   86 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeC
Confidence            45799999999999999999999887777777888877777777889999999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHH
Q 029920           94 SDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL  173 (185)
Q Consensus        94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (185)
                      +++.++.+...++..++......+.|+++|+||+|+.+....+++.+.++...... ..++++++||++|.|++++|++|
T Consensus        87 t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~-~~~~~~~~SAk~g~gv~~~~~~l  165 (168)
T cd04149          87 ADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRD-RNWYVQPSCATSGDGLYEGLTWL  165 (168)
T ss_pred             CchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCC-CcEEEEEeeCCCCCChHHHHHHH
Confidence            99999999999888887764445789999999999976666667777665443333 45689999999999999999998


Q ss_pred             HH
Q 029920          174 VQ  175 (185)
Q Consensus       174 ~~  175 (185)
                      .+
T Consensus       166 ~~  167 (168)
T cd04149         166 SS  167 (168)
T ss_pred             hc
Confidence            65

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04154 Arl2 Arl2 subfamily

Probab=100.00  E-value=2.7e-34  Score=199.46  Aligned_cols=171  Identities=67%  Similarity=1.135  Sum_probs=145.4

Q ss_pred             HHHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcC
Q 029920            4 LSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQ   83 (185)
Q Consensus         4 ~~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~   83 (185)
                      .+.++....+...++|+++|++|+|||||++++.+..+..+.+|.++....+..++..+.+|||||++.+...+..+++.
T Consensus         2 ~~~~~~~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~   81 (173)
T cd04154           2 LTIIRKQKLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFES   81 (173)
T ss_pred             chhhhhhhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCC
Confidence            35667777778889999999999999999999999887778888887777788888999999999999999899999999


Q ss_pred             CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCC
Q 029920           84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTG  163 (185)
Q Consensus        84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (185)
                      +|++++|+|++++.++.....++..++......+.|+++|+||+|+......+++...+....... ..++++++||++|
T Consensus        82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~g  160 (173)
T cd04154          82 TDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISS-HHWRIQPCSAVTG  160 (173)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCC-CceEEEeccCCCC
Confidence            999999999999999999888888887654556899999999999977656666666555432222 5778999999999


Q ss_pred             CCHHHHHHHHHH
Q 029920          164 EGLLEGFDWLVQ  175 (185)
Q Consensus       164 ~~i~~l~~~l~~  175 (185)
                      .|++++|+++.+
T Consensus       161 ~gi~~l~~~l~~  172 (173)
T cd04154         161 EGLLQGIDWLVD  172 (173)
T ss_pred             cCHHHHHHHHhc
Confidence            999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.1e-35  Score=198.90  Aligned_cols=164  Identities=21%  Similarity=0.360  Sum_probs=136.5

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce--EEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF--NIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      -...+||+++|+.|+|||+|+.++++..++ .+..|+++  ..+.+.+++  ..+++|||+|+++|+.+...|++++|++
T Consensus         6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGi   85 (205)
T KOG0084|consen    6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   85 (205)
T ss_pred             cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeE
Confidence            466899999999999999999999999996 56778884  444555554  6899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHH-HHHHhcCcccccCccceE-EEeecccCCCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPT-EIAKVLNLEAMDKTRHWK-IVGCSAYTGEG  165 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~  165 (185)
                      |+|||+++.+||.++..|+.++-++ ...++|.++|+||+|+.+..... +..+.+     +...+++ ++++||+++.|
T Consensus        86 i~vyDiT~~~SF~~v~~Wi~Ei~~~-~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~f-----a~~~~~~~f~ETSAK~~~N  159 (205)
T KOG0084|consen   86 IFVYDITKQESFNNVKRWIQEIDRY-ASENVPKLLVGNKCDLTEKRVVSTEEAQEF-----ADELGIPIFLETSAKDSTN  159 (205)
T ss_pred             EEEEEcccHHHhhhHHHHHHHhhhh-ccCCCCeEEEeeccccHhheecCHHHHHHH-----HHhcCCcceeecccCCccC
Confidence            9999999999999999999998776 45678999999999986653221 122222     2226667 99999999999


Q ss_pred             HHHHHHHHHHHHhhhcc
Q 029920          166 LLEGFDWLVQDIASRIY  182 (185)
Q Consensus       166 i~~l~~~l~~~~~~~~~  182 (185)
                      +++.|..|...+.++..
T Consensus       160 Ve~~F~~la~~lk~~~~  176 (205)
T KOG0084|consen  160 VEDAFLTLAKELKQRKG  176 (205)
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            99999999999887654

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=100.00  E-value=6.9e-34  Score=197.72  Aligned_cols=164  Identities=46%  Similarity=0.864  Sum_probs=139.6

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDS   93 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   93 (185)
                      +..+||+++|++|||||||++++..+.+..+.||.+.....+..+...+.+||+||++.+...+..+++++|++++|+|+
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~   90 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDS   90 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEEC
Confidence            45699999999999999999999877676677888877777777889999999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHH
Q 029920           94 SDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL  173 (185)
Q Consensus        94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (185)
                      +++++++....++..++......+.|+++|+||+|+.+....+++...++...... ..+.++++||++|.|++++|++|
T Consensus        91 t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~-~~~~~~~~Sa~~g~gv~e~~~~l  169 (175)
T smart00177       91 NDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRD-RNWYIQPTCATSGDGLYEGLTWL  169 (175)
T ss_pred             CCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCC-CcEEEEEeeCCCCCCHHHHHHHH
Confidence            99999999999998887654445789999999999977666667776665443333 45678899999999999999999


Q ss_pred             HHHHh
Q 029920          174 VQDIA  178 (185)
Q Consensus       174 ~~~~~  178 (185)
                      .+.+.
T Consensus       170 ~~~~~  174 (175)
T smart00177      170 SNNLK  174 (175)
T ss_pred             HHHhc
Confidence            87653

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=9.3e-34  Score=196.85  Aligned_cols=174  Identities=46%  Similarity=0.890  Sum_probs=161.0

Q ss_pred             HHHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcC
Q 029920            4 LSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQ   83 (185)
Q Consensus         4 ~~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~   83 (185)
                      ++.+++.....+..+|+++|+.||||||+++++..+......||.++....+.+++..+.+||.+|+..++..|..|++.
T Consensus         2 ~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~   81 (175)
T PF00025_consen    2 SSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQN   81 (175)
T ss_dssp             HHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTT
T ss_pred             HHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeeccc
Confidence            46778888779999999999999999999999999888889999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCC
Q 029920           84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTG  163 (185)
Q Consensus        84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (185)
                      +|++|||+|.++++.+.+....+..++......+.|+++++||.|+.+.....++...+....+.....+.++.|||.+|
T Consensus        82 ~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g  161 (175)
T PF00025_consen   82 ADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTG  161 (175)
T ss_dssp             ESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTT
T ss_pred             cceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCC
Confidence            99999999999999999999999999988777789999999999999888889999888877776447889999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 029920          164 EGLLEGFDWLVQDI  177 (185)
Q Consensus       164 ~~i~~l~~~l~~~~  177 (185)
                      .|+.+.++||.+.+
T Consensus       162 ~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  162 EGVDEGLEWLIEQI  175 (175)
T ss_dssp             BTHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHhcC
Confidence            99999999998864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=100.00  E-value=1.5e-33  Score=193.12  Aligned_cols=158  Identities=46%  Similarity=0.880  Sum_probs=133.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCc
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL   96 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   96 (185)
                      +||+++|++|||||||++++..+.+..+.||.++....+......+.+||+||++.+...+..+++++|++++|+|++++
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~   80 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   80 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence            58999999999999999999777776677888877777778889999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHH
Q 029920           97 RRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ  175 (185)
Q Consensus        97 ~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (185)
                      .++.....++..++......+.|+++++||+|+.......++...+....... ..+.++++||++|.|++++|++|.+
T Consensus        81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~-~~~~~~~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150          81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRN-RNWYIQATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCC-CCEEEEEeeCCCCCCHHHHHHHHhc
Confidence            99999998888887654445689999999999976545556555554333322 5677899999999999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04158 ARD1 ARD1 subfamily

Probab=100.00  E-value=2.9e-33  Score=193.60  Aligned_cols=165  Identities=42%  Similarity=0.797  Sum_probs=138.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR   97 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   97 (185)
                      ||+++|++|||||||++++.+..+..+.+|.+.....+...+..+.+|||||++.+...+..+++.+|++++|+|+++++
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~   80 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD   80 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence            68999999999999999999987777778888777777888899999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHH
Q 029920           98 RLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI  177 (185)
Q Consensus        98 s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (185)
                      ++.....++..++......+.|+++++||+|+.+....+++.+.+..........+.++++||++|.|++++|++|.+.+
T Consensus        81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~  160 (169)
T cd04158          81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL  160 (169)
T ss_pred             HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence            99999999999887654556899999999999766566666555432222112356789999999999999999999887


Q ss_pred             hhhcc
Q 029920          178 ASRIY  182 (185)
Q Consensus       178 ~~~~~  182 (185)
                      .+.-+
T Consensus       161 ~~~~~  165 (169)
T cd04158         161 VAAGV  165 (169)
T ss_pred             hhccc
Confidence            76543

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-33  Score=190.53  Aligned_cols=163  Identities=23%  Similarity=0.376  Sum_probs=136.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      ....+|++++|+.++|||||+.++..++|.. ..+|++  +....+..++  ++|.+|||+|++++..+.+-|++++++.
T Consensus         2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA   81 (200)
T KOG0092|consen    2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA   81 (200)
T ss_pred             CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence            3567999999999999999999999999976 478888  3344455555  8899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC--CCCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING--ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      |+|||+++.+||..+..|+.++.+... +++-+.+|+||+|+.+  ....++....-      ...+..||++||++|.|
T Consensus        82 ivvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yA------e~~gll~~ETSAKTg~N  154 (200)
T KOG0092|consen   82 IVVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYA------ESQGLLFFETSAKTGEN  154 (200)
T ss_pred             EEEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHH------HhcCCEEEEEecccccC
Confidence            999999999999999999999877644 7888889999999976  33333333222      22677899999999999


Q ss_pred             HHHHHHHHHHHHhhhcc
Q 029920          166 LLEGFDWLVQDIASRIY  182 (185)
Q Consensus       166 i~~l~~~l~~~~~~~~~  182 (185)
                      ++++|..|.+.+.+..+
T Consensus       155 v~~if~~Ia~~lp~~~~  171 (200)
T KOG0092|consen  155 VNEIFQAIAEKLPCSDP  171 (200)
T ss_pred             HHHHHHHHHHhccCccc
Confidence            99999999999876543

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=100.00  E-value=2.2e-32  Score=190.04  Aligned_cols=162  Identities=44%  Similarity=0.820  Sum_probs=137.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD   92 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   92 (185)
                      ....++|+++|++|+|||||++++.++.+....+|.+.....+.+++..+.+||+||++.+...+..+++.+|++++|+|
T Consensus        12 ~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D   91 (174)
T cd04153          12 PRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVID   91 (174)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEE
Confidence            34578999999999999999999998888777888887777788888999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHH
Q 029920           93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDW  172 (185)
Q Consensus        93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (185)
                      +++++++.....++..++......+.|+++++||+|+......+++.+.+....... ..++++++||++|.|+++++++
T Consensus        92 ~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~-~~~~~~~~SA~~g~gi~e~~~~  170 (174)
T cd04153          92 STDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRD-HTWHIQGCCALTGEGLPEGLDW  170 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccC-CceEEEecccCCCCCHHHHHHH
Confidence            999989988888888887664455799999999999976656666666665433332 5678999999999999999999


Q ss_pred             HHH
Q 029920          173 LVQ  175 (185)
Q Consensus       173 l~~  175 (185)
                      |.+
T Consensus       171 l~~  173 (174)
T cd04153         171 IAS  173 (174)
T ss_pred             Hhc
Confidence            865

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=100.00  E-value=1.6e-32  Score=192.09  Aligned_cols=170  Identities=37%  Similarity=0.684  Sum_probs=136.2

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEE-----cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTY-----QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      +.++|+++|++|||||||++++....+....+|.++.......     ....+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999988776556776644443333     35789999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (185)
                      |+|++++.++.....++..+.......+.|+++++||+|+.......++..............++++++||++|.|++++
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  161 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG  161 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence            99999998898888888877765555579999999999987654555555444432222223467899999999999999


Q ss_pred             HHHHHHHHhhhcccC
Q 029920          170 FDWLVQDIASRIYLL  184 (185)
Q Consensus       170 ~~~l~~~~~~~~~~~  184 (185)
                      +++|.+.+.+.++++
T Consensus       162 ~~~l~~~l~~~~~~~  176 (183)
T cd04152         162 LEKLYEMILKRRKML  176 (183)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999998776654

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=1.1e-32  Score=194.95  Aligned_cols=160  Identities=24%  Similarity=0.371  Sum_probs=125.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      +.|+++|+.|+|||||++++..+.+. .+.+|.+  +....+.+++  +.+++|||+|++.+..++..+++++|++++||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            47899999999999999999988885 4556665  3344566655  78899999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH-HHHHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP-TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF  170 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (185)
                      |++++++|+.+..|+..+... ...+.|+++|+||+|+...... .+....+.    ....+++++++||++|.|++++|
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a----~~~~~~~~~etSAktg~gV~e~F  155 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKFA----QQITGMRFCEASAKDNFNVDEIF  155 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHH----HhcCCCEEEEecCCCCCCHHHHH
Confidence            999999999998887765433 3457999999999998643221 11111111    11135679999999999999999


Q ss_pred             HHHHHHHhhhc
Q 029920          171 DWLVQDIASRI  181 (185)
Q Consensus       171 ~~l~~~~~~~~  181 (185)
                      +++++.+.+..
T Consensus       156 ~~l~~~~~~~~  166 (202)
T cd04120         156 LKLVDDILKKM  166 (202)
T ss_pred             HHHHHHHHHhC
Confidence            99999886653

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04151 Arl1 Arl1 subfamily

Probab=100.00  E-value=4.8e-32  Score=185.52  Aligned_cols=157  Identities=50%  Similarity=0.915  Sum_probs=129.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR   97 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   97 (185)
                      ||+++|++|+|||||++++....+....+|.+.....+...+..+.+|||||++.+...+..+++.+|++++|+|++++.
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~   80 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD   80 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence            68999999999999999998877766677877777777778899999999999999999999999999999999999988


Q ss_pred             cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHH
Q 029920           98 RLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ  175 (185)
Q Consensus        98 s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (185)
                      ++.....++...+......+.|+++++||+|+.+.....++...+....... ...+++++||++|.|+++++++|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151          81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKD-RTWSIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCC-CcEEEEEeeccCCCCHHHHHHHHhc
Confidence            8887777777666544445799999999999976655566655554332222 4568999999999999999999875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-32  Score=185.77  Aligned_cols=164  Identities=18%  Similarity=0.308  Sum_probs=136.4

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce--EEEEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF--NIKTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~--~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      .-+.+|++++|+.++||||||++++...+. .+.+|+|.  ..+.+.+.  .+.+++|||+||++|+.+...|++++.++
T Consensus        19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va   98 (221)
T KOG0094|consen   19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   98 (221)
T ss_pred             cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence            445589999999999999999999998885 78888884  44455554  47899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      |+|||+++..||+...+|+.+....+...+.-+++|+||.||.+..+.   ....+...+++ .+.-|+++||+.|.|+.
T Consensus        99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqv---s~eEg~~kAke-l~a~f~etsak~g~NVk  174 (221)
T KOG0094|consen   99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQV---SIEEGERKAKE-LNAEFIETSAKAGENVK  174 (221)
T ss_pred             EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhh---hHHHHHHHHHH-hCcEEEEecccCCCCHH
Confidence            999999999999999999999999877667888999999999876333   22222223333 56679999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 029920          168 EGFDWLVQDIASR  180 (185)
Q Consensus       168 ~l~~~l~~~~~~~  180 (185)
                      ++|..|...+.+.
T Consensus       175 ~lFrrIaa~l~~~  187 (221)
T KOG0094|consen  175 QLFRRIAAALPGM  187 (221)
T ss_pred             HHHHHHHHhccCc
Confidence            9999988876543

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=100.00  E-value=8.9e-32  Score=184.44  Aligned_cols=158  Identities=44%  Similarity=0.825  Sum_probs=132.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEc-CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCc
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQ-KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL   96 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   96 (185)
                      +|+++|++|||||||++++.+..+....+|.++....+... ...+.+||+||++.+...+..++..+|++++|+|++++
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~   80 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE   80 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence            58999999999999999999998877778887766666553 47899999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHH
Q 029920           97 RRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ  175 (185)
Q Consensus        97 ~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (185)
                      .++.....++..++......+.|+++|+||+|+......+++...+..........++++++||++|.|++++|++|.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156          81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence            8999988888888776544689999999999997665666666665543444335678999999999999999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=100.00  E-value=1.1e-31  Score=185.27  Aligned_cols=158  Identities=41%  Similarity=0.719  Sum_probs=137.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR   97 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   97 (185)
                      +|+++|++|||||||++++.+.....+.+|.+.....+..++..+++||+||++.++.++..+++.+|++++|+|++++.
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~   80 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD   80 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence            48999999999999999999885567788888888888888999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccC--ccceEEEeecccCC------CCHHHH
Q 029920           98 RLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDK--TRHWKIVGCSAYTG------EGLLEG  169 (185)
Q Consensus        98 s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~------~~i~~l  169 (185)
                      ++..+..++..+.......++|+++|+||+|+.......++...+....+..  ...+++++|||++|      .|+++.
T Consensus        81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~  160 (167)
T cd04161          81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEG  160 (167)
T ss_pred             HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHH
Confidence            9999999999887765556799999999999988777777777776555432  23578899999998      899999


Q ss_pred             HHHHHH
Q 029920          170 FDWLVQ  175 (185)
Q Consensus       170 ~~~l~~  175 (185)
                      |+||..
T Consensus       161 ~~wl~~  166 (167)
T cd04161         161 LRWLLA  166 (167)
T ss_pred             HHHHhc
Confidence            999864

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04157 Arl6 Arl6 subfamily

Probab=100.00  E-value=9.2e-32  Score=184.62  Aligned_cols=157  Identities=40%  Similarity=0.717  Sum_probs=129.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC--cccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT--SVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD   95 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~   95 (185)
                      +|+++|++|||||||++++.+...  ..+.+|.++....+...+..+.+|||||++.+...+..+++.+|++++|+|+++
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~   80 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD   80 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence            589999999999999999998743  466788887777777788999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHhccc--cCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHH
Q 029920           96 LRRLDDCKMELDNLLKEER--LSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL  173 (185)
Q Consensus        96 ~~s~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (185)
                      +.++.....++..++....  ..+.|+++|+||+|+.+.....++...+....... ..++++++||++|.|+++++++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~-~~~~~~~~Sa~~g~gv~~~~~~l  159 (162)
T cd04157          81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKD-KPWHIFASNALTGEGLDEGVQWL  159 (162)
T ss_pred             HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccC-ceEEEEEeeCCCCCchHHHHHHH
Confidence            9999888888887765432  24799999999999976655555555554332221 35679999999999999999998


Q ss_pred             HH
Q 029920          174 VQ  175 (185)
Q Consensus       174 ~~  175 (185)
                      .+
T Consensus       160 ~~  161 (162)
T cd04157         160 QA  161 (162)
T ss_pred             hc
Confidence            64

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=1.7e-31  Score=187.21  Aligned_cols=160  Identities=17%  Similarity=0.307  Sum_probs=128.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE--EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN--IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ...+||+++|+.|+|||||++++..+.+. .+.++.+..  ...+..++  +.+.+|||+|++.+..++..+++.+|+++
T Consensus         4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il   83 (189)
T cd04121           4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII   83 (189)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            45699999999999999999999988774 444555543  33455555  78899999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL  166 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (185)
                      +|||++++.+|+.+..|+..+....  ++.|+++|+||+|+...  ...++.....      ...+++++++||++|.|+
T Consensus        84 lVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a------~~~~~~~~e~SAk~g~~V  155 (189)
T cd04121          84 LVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYA------ERNGMTFFEVSPLCNFNI  155 (189)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHH------HHcCCEEEEecCCCCCCH
Confidence            9999999999999999988886543  57999999999998643  2222222211      125678999999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q 029920          167 LEGFDWLVQDIASRI  181 (185)
Q Consensus       167 ~~l~~~l~~~~~~~~  181 (185)
                      +++|+++++.+..+.
T Consensus       156 ~~~F~~l~~~i~~~~  170 (189)
T cd04121         156 TESFTELARIVLMRH  170 (189)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999876543

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04155 Arl3 Arl3 subfamily

Probab=100.00  E-value=2.6e-31  Score=184.36  Aligned_cols=170  Identities=54%  Similarity=0.955  Sum_probs=144.6

Q ss_pred             HHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCC
Q 029920            5 SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQT   84 (185)
Q Consensus         5 ~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   84 (185)
                      +.++...+..+.++|+++|++|||||||++++.+..+..+.++.++....+..++..+.+||+||+..+...+..+++.+
T Consensus         3 ~~~~~~~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~   82 (173)
T cd04155           3 SLLRKLRKSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENT   82 (173)
T ss_pred             hHHHHhhccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCC
Confidence            45667777788999999999999999999999998887778888888888888889999999999998888888899999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920           85 DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE  164 (185)
Q Consensus        85 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (185)
                      |++++|+|+++..++.....++..++......++|+++++||+|+.+.....++...++...... ..++++++||++|.
T Consensus        83 ~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~Sa~~~~  161 (173)
T cd04155          83 DCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRD-RTWHIQACSAKTGE  161 (173)
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCC-CeEEEEEeECCCCC
Confidence            99999999999888888888888877665555799999999999977666666766665443333 45678999999999


Q ss_pred             CHHHHHHHHHH
Q 029920          165 GLLEGFDWLVQ  175 (185)
Q Consensus       165 ~i~~l~~~l~~  175 (185)
                      |++++++||++
T Consensus       162 gi~~~~~~l~~  172 (173)
T cd04155         162 GLQEGMNWVCK  172 (173)
T ss_pred             CHHHHHHHHhc
Confidence            99999999875

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=100.00  E-value=2.2e-31  Score=186.56  Aligned_cols=164  Identities=33%  Similarity=0.567  Sum_probs=140.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD   92 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   92 (185)
                      ..+.++|+++|++|||||||++++.+..+..+.+|.+.....+..++..+.+||+||+..+...+..+++.+|++++|+|
T Consensus        14 ~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD   93 (184)
T smart00178       14 WNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVD   93 (184)
T ss_pred             ccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence            36679999999999999999999999887777777777777778888999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCccccc------CccceEEEeecccCCCCH
Q 029920           93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMD------KTRHWKIVGCSAYTGEGL  166 (185)
Q Consensus        93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~i  166 (185)
                      ++++.++.....++..++......+.|+++++||+|+......+++...++.....      ..+.+.+++|||+++.|+
T Consensus        94 ~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~  173 (184)
T smart00178       94 AYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGY  173 (184)
T ss_pred             CCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCCh
Confidence            99999999888888887765445679999999999998777778888777654322      124667999999999999


Q ss_pred             HHHHHHHHHH
Q 029920          167 LEGFDWLVQD  176 (185)
Q Consensus       167 ~~l~~~l~~~  176 (185)
                      +++++||.+.
T Consensus       174 ~~~~~wl~~~  183 (184)
T smart00178      174 GEGFKWLSQY  183 (184)
T ss_pred             HHHHHHHHhh
Confidence            9999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.9e-32  Score=186.92  Aligned_cols=165  Identities=22%  Similarity=0.389  Sum_probs=135.0

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDG   86 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~   86 (185)
                      .....+||+++|++|||||+++.++..+.+. ....|++  +..+.+..++  +.+++|||+|+++++.+...|++++++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            3567899999999999999999999999885 4556777  4455566655  789999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920           87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL  166 (185)
Q Consensus        87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (185)
                      +++|||+++..||+++..|+..+-++ ...+.|.++|+||+|+...   +.+....++..+ ...+++|+++||++|.||
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~~~---R~V~~e~ge~lA-~e~G~~F~EtSAk~~~NI  162 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLEEK---RQVSKERGEALA-REYGIKFFETSAKTNFNI  162 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhh-CCCCCcEEEeecccccccc---ccccHHHHHHHH-HHhCCeEEEccccCCCCH
Confidence            99999999999999999977776554 5568999999999999663   222222222222 227899999999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q 029920          167 LEGFDWLVQDIASRI  181 (185)
Q Consensus       167 ~~l~~~l~~~~~~~~  181 (185)
                      ++.|..|+..+.++.
T Consensus       163 ~eaF~~La~~i~~k~  177 (207)
T KOG0078|consen  163 EEAFLSLARDILQKL  177 (207)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999887654

>cd00879 Sar1 Sar1 subfamily

Probab=100.00  E-value=3.1e-31  Score=186.69  Aligned_cols=167  Identities=35%  Similarity=0.621  Sum_probs=140.1

Q ss_pred             hhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      +....+.++|+++|++|||||||++++.+..+..+.+|.+.....+.+++..+.+||+||++.+...+..+++.+|++++
T Consensus        13 ~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iil   92 (190)
T cd00879          13 LGLYNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVF   92 (190)
T ss_pred             hhcccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            33355689999999999999999999999888777778877777788888999999999999988888999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccc----------cCccceEEEeec
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAM----------DKTRHWKIVGCS  159 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~S  159 (185)
                      |+|+++++++.....++..++......+.|+++++||+|+.......++...+.....          .....+++++||
T Consensus        93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  172 (190)
T cd00879          93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCS  172 (190)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeE
Confidence            9999999899888888888877655567999999999999776667777666653221          111346799999


Q ss_pred             ccCCCCHHHHHHHHHHH
Q 029920          160 AYTGEGLLEGFDWLVQD  176 (185)
Q Consensus       160 a~~~~~i~~l~~~l~~~  176 (185)
                      |++|.|++++|++|.+.
T Consensus       173 a~~~~gv~e~~~~l~~~  189 (190)
T cd00879         173 VVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             ecCCCChHHHHHHHHhh
Confidence            99999999999999875

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=6.7e-32  Score=187.19  Aligned_cols=160  Identities=18%  Similarity=0.265  Sum_probs=126.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      .+||+++|.+|+|||||++++.+..+. .+.+|.+... ..+..++  +.+.+|||||++.+..++..++..+|++++||
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~   81 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY   81 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence            479999999999999999999988885 5566766333 2344544  67999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (185)
                      |++++.+|+.+..|+..+......++.|+++|+||+|+.+..  ..++... +    . ...++++++|||++|.|++++
T Consensus        82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~-~----a-~~~~~~~~e~Sa~~~~~v~~~  155 (172)
T cd04141          82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRN-L----A-REFNCPFFETSAALRHYIDDA  155 (172)
T ss_pred             ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHH-H----H-HHhCCEEEEEecCCCCCHHHH
Confidence            999999999998876655544334579999999999986432  2222211 1    1 125678999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 029920          170 FDWLVQDIASRI  181 (185)
Q Consensus       170 ~~~l~~~~~~~~  181 (185)
                      |+++++.+.+..
T Consensus       156 f~~l~~~~~~~~  167 (172)
T cd04141         156 FHGLVREIRRKE  167 (172)
T ss_pred             HHHHHHHHHHhc
Confidence            999998877654

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.7e-32  Score=181.47  Aligned_cols=179  Identities=47%  Similarity=0.844  Sum_probs=166.0

Q ss_pred             CChH-HHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHh
Q 029920            1 MGLL-SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN   79 (185)
Q Consensus         1 ~~~~-~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~   79 (185)
                      ||+. +.+..........+|+++|.-++||||++++|..+.+-...||+++....+++.+..|.+||..|+++++..|..
T Consensus         1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~   80 (181)
T KOG0070|consen    1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKH   80 (181)
T ss_pred             CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhh
Confidence            6776 444555668889999999999999999999999988888899999999999999999999999999999999999


Q ss_pred             hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeec
Q 029920           80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCS  159 (185)
Q Consensus        80 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (185)
                      |+.+.+++|||+|.+|++.+.++...+..++......+.|+++.+||.|+..+-+..++...+....+.. ..+.+..|+
T Consensus        81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~-~~w~iq~~~  159 (181)
T KOG0070|consen   81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRS-RNWHIQSTC  159 (181)
T ss_pred             hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCC-CCcEEeecc
Confidence            9999999999999999999999999999999987778899999999999999999999999999888887 899999999


Q ss_pred             ccCCCCHHHHHHHHHHHHhhh
Q 029920          160 AYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~~  180 (185)
                      |.+|.|+.|.++|+.+.+..+
T Consensus       160 a~~G~GL~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  160 AISGEGLYEGLDWLSNNLKKR  180 (181)
T ss_pred             ccccccHHHHHHHHHHHHhcc
Confidence            999999999999999988653

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.3e-32  Score=182.41  Aligned_cols=164  Identities=22%  Similarity=0.348  Sum_probs=135.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE--EEEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN--IKTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      ....+|++++|+.|+|||+|+.+++.+.|. ....|+++.  .+.+.++  ..++++|||+|++.|++....|++.+.++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            456799999999999999999999999995 445666644  3344444  47899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      |+|||++.+++|..+.+|+.+..++ ..+|..+++++||+|+....   +++...+.+.+.. ++..++++||+++.|++
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~-~~~NmvImLiGNKsDL~~rR---~Vs~EEGeaFA~e-hgLifmETSakt~~~VE  157 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQH-SNENMVIMLIGNKSDLEARR---EVSKEEGEAFARE-HGLIFMETSAKTAENVE  157 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHh-cCCCcEEEEEcchhhhhccc---cccHHHHHHHHHH-cCceeehhhhhhhhhHH
Confidence            9999999999999999999999777 35689999999999996542   3333333333333 88899999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 029920          168 EGFDWLVQDIASRI  181 (185)
Q Consensus       168 ~l~~~l~~~~~~~~  181 (185)
                      |.|..+...+.+..
T Consensus       158 EaF~nta~~Iy~~~  171 (216)
T KOG0098|consen  158 EAFINTAKEIYRKI  171 (216)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999988876543

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=100.00  E-value=4e-31  Score=180.89  Aligned_cols=157  Identities=51%  Similarity=0.933  Sum_probs=136.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR   97 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   97 (185)
                      ||+++|++|||||||++++.+.......++.+.....+.++...+.+||+||++.+...+..++..+|++++|+|+++++
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~   80 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE   80 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence            68999999999999999999998877888888888888888999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHH
Q 029920           98 RLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ  175 (185)
Q Consensus        98 s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (185)
                      ++.....++..+.......+.|+++++||+|+.......+....+....... ..++++++||++|.|++++|++|..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878          81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILG-RRWHIQPCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccC-CcEEEEEeeCCCCCCHHHHHHHHhh
Confidence            9999999888887765556899999999999987666666666655432222 5678999999999999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=3.3e-31  Score=189.43  Aligned_cols=162  Identities=18%  Similarity=0.285  Sum_probs=128.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCc
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL   96 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   96 (185)
                      +||+++|.+|+|||||++++..+.+....+|.+.......+..+.+.+|||+|++.+..++..+++.+|++|+|||++++
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~   80 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV   80 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence            58999999999999999999999987777787766555566678899999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC---------------------CCHHHHHHhcCc--------ccc
Q 029920           97 RRLDDCKMELDNLLKEERLSGASLLILANKQDINGA---------------------LTPTEIAKVLNL--------EAM  147 (185)
Q Consensus        97 ~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~---------------------~~~~~~~~~~~~--------~~~  147 (185)
                      ++|+.+..|+..+... ...+.|+++|+||+|+.+.                     ...++.......        +.+
T Consensus        81 ~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~  159 (220)
T cd04126          81 QSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDL  159 (220)
T ss_pred             HHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccc
Confidence            9999999988887654 3457899999999998651                     111111111000        001


Q ss_pred             cCccceEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920          148 DKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       148 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                      ......+|++|||++|.|++++|..+++.+.+
T Consensus       160 ~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~  191 (220)
T cd04126         160 SPAAEKMCFETSAKTGYNVDELFEYLFNLVLP  191 (220)
T ss_pred             cccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            11123689999999999999999999988764

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=4.5e-32  Score=181.42  Aligned_cols=164  Identities=21%  Similarity=0.333  Sum_probs=133.7

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDG   86 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~   86 (185)
                      .+...+||+++|++|+|||+|+|++..+++. .+..|++  +..+.+.+++  +.+++|||+|+++|.++...+++++|.
T Consensus         5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc   84 (210)
T KOG0394|consen    5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC   84 (210)
T ss_pred             CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence            4677899999999999999999999999986 5667777  3444444444  789999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhcccc---CCCeEEEEeecCCCCCC---CCHHHHHHhcCcccccCccceEEEeecc
Q 029920           87 LVWVVDSSDLRRLDDCKMELDNLLKEERL---SGASLLILANKQDINGA---LTPTEIAKVLNLEAMDKTRHWKIVGCSA  160 (185)
Q Consensus        87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (185)
                      +++|||+++++||+.+..|-.+++.+...   ...|+|+++||+|+...   .......+.+    .....++|+|++||
T Consensus        85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~W----C~s~gnipyfEtSA  160 (210)
T KOG0394|consen   85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTW----CKSKGNIPYFETSA  160 (210)
T ss_pred             EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHH----HHhcCCceeEEecc
Confidence            99999999999999999999999887532   34799999999998653   2222222222    12226899999999


Q ss_pred             cCCCCHHHHHHHHHHHHhh
Q 029920          161 YTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~~  179 (185)
                      ++..|+++.|+.+.+.+..
T Consensus       161 K~~~NV~~AFe~ia~~aL~  179 (210)
T KOG0394|consen  161 KEATNVDEAFEEIARRALA  179 (210)
T ss_pred             cccccHHHHHHHHHHHHHh
Confidence            9999999999999988764

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=1.1e-30  Score=182.42  Aligned_cols=160  Identities=18%  Similarity=0.346  Sum_probs=126.7

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE--EEEEc------------CeEEEEEEcCCchhhHHHHHh
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK--TVTYQ------------KYTLNIWDVGGQRTIRSYWRN   79 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~--~~~~~------------~~~~~~~D~~g~~~~~~~~~~   79 (185)
                      ..+||+++|++|||||||++++.++.+. .+.+|.+....  .+.+.            ...+.+|||||++.+...+..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            4689999999999999999999988775 44566653332  23322            378999999999999999999


Q ss_pred             hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEe
Q 029920           80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVG  157 (185)
Q Consensus        80 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      +++++|++++|||++++++|..+..|+..+......++.|+++|+||+|+.+..  ..++......      ..+.++++
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~e  156 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALAD------KYGIPYFE  156 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHH------HcCCeEEE
Confidence            999999999999999999999999988887665444578999999999986532  2222222111      13468999


Q ss_pred             ecccCCCCHHHHHHHHHHHHhhh
Q 029920          158 CSAYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       158 ~Sa~~~~~i~~l~~~l~~~~~~~  180 (185)
                      +||++|.|++++|++|.+.+.++
T Consensus       157 ~Sak~~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         157 TSAATGTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999987665

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd01875 RhoG RhoG subfamily

Probab=99.98  E-value=1.2e-31  Score=188.85  Aligned_cols=163  Identities=17%  Similarity=0.261  Sum_probs=123.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      ..+||+++|+.|+|||||++++..+.+. .+.+|.+.... .+..+  .+.+.+|||+|++.+..++..+++++|++++|
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            3589999999999999999999998884 56677764332 23333  37899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHH-HHHHHHhccccCCCeEEEEeecCCCCCCCCHH-HHHH--------hcCcccccCccceEEEeecc
Q 029920           91 VDSSDLRRLDDCKM-ELDNLLKEERLSGASLLILANKQDINGALTPT-EIAK--------VLNLEAMDKTRHWKIVGCSA  160 (185)
Q Consensus        91 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~Sa  160 (185)
                      ||++++.+|+.+.. |...+...  .++.|+++|+||+|+.+..... ....        ..+.........++++++||
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA  159 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA  159 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence            99999999999975 54444332  3579999999999996532211 1111        00111111212368999999


Q ss_pred             cCCCCHHHHHHHHHHHHhh
Q 029920          161 YTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~~  179 (185)
                      ++|.|++++|+++++.+..
T Consensus       160 k~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         160 LNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999988754

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.98  E-value=5.5e-31  Score=181.31  Aligned_cols=156  Identities=35%  Similarity=0.636  Sum_probs=132.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC-cccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCc
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT-SVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL   96 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   96 (185)
                      .|+++|++|+|||||++++.+..+ ..+.||.+.....+...+..+.+||+||++.+...+..+++.+|++++|||++++
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~   80 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADS   80 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH
Confidence            379999999999999999998866 4567888876666777889999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccC------CCCHHHHH
Q 029920           97 RRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYT------GEGLLEGF  170 (185)
Q Consensus        97 ~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~~i~~l~  170 (185)
                      .++.....++..+....  +++|+++|+||+|+.......++...+....+.....++++++||++      ++|++++|
T Consensus        81 ~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~  158 (164)
T cd04162          81 ERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLL  158 (164)
T ss_pred             HHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHH
Confidence            99999888888876542  58999999999999777666666666665555555788899999888      99999999


Q ss_pred             HHHHH
Q 029920          171 DWLVQ  175 (185)
Q Consensus       171 ~~l~~  175 (185)
                      +.++.
T Consensus       159 ~~~~~  163 (164)
T cd04162         159 SQLIN  163 (164)
T ss_pred             HHHhc
Confidence            88764

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04133 Rop_like Rop subfamily

Probab=99.98  E-value=5.7e-31  Score=182.69  Aligned_cols=159  Identities=18%  Similarity=0.238  Sum_probs=122.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD   92 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   92 (185)
                      +||+++|++|+|||+|+.++..+.+. .+.+|.+.... .+..++  +.+.+|||+|++.+..++..+++++|++|+|||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd   81 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   81 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence            68999999999999999999998885 56777764332 344443  789999999999999999999999999999999


Q ss_pred             CCCcccHHHH-HHHHHHHHhccccCCCeEEEEeecCCCCCCCCH-------HHHHHhcCcccccCccce-EEEeecccCC
Q 029920           93 SSDLRRLDDC-KMELDNLLKEERLSGASLLILANKQDINGALTP-------TEIAKVLNLEAMDKTRHW-KIVGCSAYTG  163 (185)
Q Consensus        93 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  163 (185)
                      +++++||+.+ ..|+..+....  ++.|+++|+||+|+.+....       ..+....... ++...+. ++++|||++|
T Consensus        82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~-~a~~~~~~~~~E~SAk~~  158 (176)
T cd04133          82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEE-LRKQIGAAAYIECSSKTQ  158 (176)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHH-HHHHcCCCEEEECCCCcc
Confidence            9999999998 56777765442  47999999999999553110       0011111111 1112344 6999999999


Q ss_pred             CCHHHHHHHHHHHHh
Q 029920          164 EGLLEGFDWLVQDIA  178 (185)
Q Consensus       164 ~~i~~l~~~l~~~~~  178 (185)
                      .|++++|+.+++.+.
T Consensus       159 ~nV~~~F~~~~~~~~  173 (176)
T cd04133         159 QNVKAVFDAAIKVVL  173 (176)
T ss_pred             cCHHHHHHHHHHHHh
Confidence            999999999998763

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.98  E-value=9.2e-31  Score=185.85  Aligned_cols=159  Identities=22%  Similarity=0.308  Sum_probs=126.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE--EEEEEEc---CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN--IKTVTYQ---KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~--~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      +||+++|++|+|||||+++|.++.+. .+.+|.+..  ...+..+   .+.+.+|||||++.+..++..+++++|++++|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            58999999999999999999988775 456777643  3345544   46899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhcc---ccCCCeEEEEeecCCCCC--CCCHHHHHHhcCcccccCccc-eEEEeecccCCC
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEE---RLSGASLLILANKQDING--ALTPTEIAKVLNLEAMDKTRH-WKIVGCSAYTGE  164 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  164 (185)
                      ||++++++|+.+..|+..+....   ...+.|+++|+||+|+.+  ....++.......      .+ .+++++||++|.
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~e~Sak~~~  154 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKE------NGFIGWFETSAKEGI  154 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHH------cCCceEEEEeCCCCC
Confidence            99999999999988877664432   235789999999999963  3333343332221      23 579999999999


Q ss_pred             CHHHHHHHHHHHHhhhc
Q 029920          165 GLLEGFDWLVQDIASRI  181 (185)
Q Consensus       165 ~i~~l~~~l~~~~~~~~  181 (185)
                      |++++|++|.+.+.+..
T Consensus       155 ~v~e~f~~l~~~l~~~~  171 (201)
T cd04107         155 NIEEAMRFLVKNILAND  171 (201)
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            99999999999886643

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.98  E-value=6.6e-31  Score=181.26  Aligned_cols=155  Identities=18%  Similarity=0.327  Sum_probs=124.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEEEEE----cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKTVTY----QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      +||+++|++|||||||++++..+.+. .+.+|.+.......+    ..+.+.+|||||++.+...+..++..+|++++|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999877654 566777655444332    3478999999999998888888999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHH
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFD  171 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (185)
                      |++++++++.+..|+..+.....  +.|+++|+||+|+.......+... +     ......+++++||++|.|++++|+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~--~~piiiv~nK~Dl~~~~~~~~~~~-~-----~~~~~~~~~e~Sa~~~~~v~~~f~  152 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG--NIPIVLCGNKVDIKDRKVKAKQIT-F-----HRKKNLQYYEISAKSNYNFEKPFL  152 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC--CCcEEEEEEchhcccccCCHHHHH-H-----HHHcCCEEEEEeCCCCCChHHHHH
Confidence            99999999999888888766543  799999999999864332222111 1     112567899999999999999999


Q ss_pred             HHHHHHhh
Q 029920          172 WLVQDIAS  179 (185)
Q Consensus       172 ~l~~~~~~  179 (185)
                      +|.+.+.+
T Consensus       153 ~l~~~~~~  160 (166)
T cd00877         153 WLARKLLG  160 (166)
T ss_pred             HHHHHHHh
Confidence            99998865

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.98  E-value=3.4e-31  Score=184.11  Aligned_cols=159  Identities=21%  Similarity=0.264  Sum_probs=120.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCC-cccccCcceEEE-EEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDT-SVISPTLGFNIK-TVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD   92 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~-~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   92 (185)
                      +||+++|++|+|||||++++..+.+ ..+.||.+.... .+..++  +.+.+|||+|++.+...+..+++.+|++++|||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d   81 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS   81 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence            7999999999999999999998888 466777764443 345555  678899999999999888889999999999999


Q ss_pred             CCCcccHHHHHH-HHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHh---------cCcccccCccceEEEeecccC
Q 029920           93 SSDLRRLDDCKM-ELDNLLKEERLSGASLLILANKQDINGALTPTEIAKV---------LNLEAMDKTRHWKIVGCSAYT  162 (185)
Q Consensus        93 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~Sa~~  162 (185)
                      ++++++|+.+.. |+..+...  .++.|+++|+||+|+.+.....+....         ...........++++++||++
T Consensus        82 ~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t  159 (175)
T cd01874          82 VVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT  159 (175)
T ss_pred             CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence            999999999875 55554332  347999999999998543211111100         001111121346899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 029920          163 GEGLLEGFDWLVQDI  177 (185)
Q Consensus       163 ~~~i~~l~~~l~~~~  177 (185)
                      |.|++++|+.++++.
T Consensus       160 g~~v~~~f~~~~~~~  174 (175)
T cd01874         160 QKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.98  E-value=2.1e-30  Score=178.84  Aligned_cols=158  Identities=40%  Similarity=0.725  Sum_probs=129.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC-------cccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT-------SVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      +|+++|++|||||||++++.+...       ..+.+|.+.....+.+++..+.+|||||++.+...+..++..+|++++|
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v   80 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV   80 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence            589999999999999999976432       2445677777777888899999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccc-cCccceEEEeecccCCCCHHHH
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAM-DKTRHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~i~~l  169 (185)
                      +|+++++++.....++..++......+.|+++++||+|+.......+....+..... .....++++++||++|.|++++
T Consensus        81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  160 (167)
T cd04160          81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG  160 (167)
T ss_pred             EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence            999998889988888888877655567999999999998776655555555443221 1124578999999999999999


Q ss_pred             HHHHHH
Q 029920          170 FDWLVQ  175 (185)
Q Consensus       170 ~~~l~~  175 (185)
                      +++|.+
T Consensus       161 ~~~l~~  166 (167)
T cd04160         161 IEWLVE  166 (167)
T ss_pred             HHHHhc
Confidence            999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.98  E-value=9.8e-31  Score=179.31  Aligned_cols=156  Identities=19%  Similarity=0.320  Sum_probs=122.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      .+||+++|++|||||||++++.++.+. .+.+|.+.. ...+..++  ..+.+|||||++.+..++..+++.+|++++|+
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            368999999999999999999988764 444555532 23344444  56889999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC-CHHHHHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL-TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF  170 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (185)
                      |++++.+++....|+..+.......+.|+++|+||+|+.+.. ...+......      ..+.+++++||++|.|++++|
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l~  154 (162)
T cd04138          81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAK------SYGIPYIETSAKTRQGVEEAF  154 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHH------HhCCeEEEecCCCCCCHHHHH
Confidence            999999999998888888766555679999999999986532 2222222211      145689999999999999999


Q ss_pred             HHHHHHH
Q 029920          171 DWLVQDI  177 (185)
Q Consensus       171 ~~l~~~~  177 (185)
                      +++++.+
T Consensus       155 ~~l~~~~  161 (162)
T cd04138         155 YTLVREI  161 (162)
T ss_pred             HHHHHHh
Confidence            9998754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04122 Rab14 Rab14 subfamily

Probab=99.98  E-value=3.9e-30  Score=177.39  Aligned_cols=157  Identities=19%  Similarity=0.318  Sum_probs=124.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      .+||+++|++|+|||||++++.++.+. .+.+|.+...  ..+..++  +.+.+|||||++.+...+..+++++|++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            479999999999999999999988775 3445555333  3344443  6789999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      ||++++++|+.+..|+..+... ..++.|+++|+||+|+.....  .++.....      ...+++++++||++|.|+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~e~Sa~~~~~i~e  154 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFA------DENGLLFLECSAKTGENVED  154 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHH------HHcCCEEEEEECCCCCCHHH
Confidence            9999999999999988876543 335789999999999865432  22322221      11456899999999999999


Q ss_pred             HHHHHHHHHhh
Q 029920          169 GFDWLVQDIAS  179 (185)
Q Consensus       169 l~~~l~~~~~~  179 (185)
                      +|.++++.+.+
T Consensus       155 ~f~~l~~~~~~  165 (166)
T cd04122         155 AFLETAKKIYQ  165 (166)
T ss_pred             HHHHHHHHHhh
Confidence            99999987754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>PTZ00369 Ras-like protein; Provisional

Probab=99.97  E-value=1.2e-30  Score=183.49  Aligned_cols=162  Identities=17%  Similarity=0.270  Sum_probs=128.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      ...+||+++|++|||||||++++.+..+. .+.+|.+.... .+..+  ...+++|||||++.+..++..+++.+|++++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            34699999999999999999999988774 55566654332 33343  3678899999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      |+|++++++|+.+..|+..+.......+.|+++|+||+|+....  ...+.....      ...+++++++||++|.|++
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~------~~~~~~~~e~Sak~~~gi~  156 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELA------KSFGIPFLETSAKQRVNVD  156 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH------HHhCCEEEEeeCCCCCCHH
Confidence            99999999999999888888766555678999999999985432  222222111      1135689999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 029920          168 EGFDWLVQDIASRI  181 (185)
Q Consensus       168 ~l~~~l~~~~~~~~  181 (185)
                      ++|+++++.+.+..
T Consensus       157 ~~~~~l~~~l~~~~  170 (189)
T PTZ00369        157 EAFYELVREIRKYL  170 (189)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999998876653

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=1.4e-30  Score=186.96  Aligned_cols=158  Identities=16%  Similarity=0.298  Sum_probs=128.6

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEEEE--E--cCeEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKTVT--Y--QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~~~--~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ...+||+++|++|||||||++++..+.+. .+.+|.+.......  .  ....+.+|||+|++.+..++..+++.+|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            67799999999999999999998877774 56788876554433  2  3478999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      +|||++++++|+.+..|+..+...  ..+.|+++|+||+|+..... .+++  .+     .....++++++||++|.|++
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~--~~-----~~~~~~~~~e~SAk~~~~i~  161 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV--TF-----HRKKNLQYYEISAKSNYNFE  161 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhccCCHHHH--HH-----HHhcCCEEEEcCCCCCCCHH
Confidence            999999999999999988887654  35799999999999854322 2222  11     11256789999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 029920          168 EGFDWLVQDIASR  180 (185)
Q Consensus       168 ~l~~~l~~~~~~~  180 (185)
                      ++|++|++.+.+.
T Consensus       162 ~~f~~l~~~~~~~  174 (219)
T PLN03071        162 KPFLYLARKLAGD  174 (219)
T ss_pred             HHHHHHHHHHHcC
Confidence            9999999988654

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.97  E-value=4.2e-31  Score=184.35  Aligned_cols=162  Identities=20%  Similarity=0.255  Sum_probs=123.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      ...+||+++|++|+|||||++++..+.+. .+.||.+... ..+..+  .+.+.+|||+|++.+..++..+++++|++++
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il   82 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI   82 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence            45789999999999999999999998875 4667776333 234444  3689999999999999999999999999999


Q ss_pred             EEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEeecCCCCCCCC---------HHHHHHhcCcccccCccc-eEEEee
Q 029920           90 VVDSSDLRRLDDC-KMELDNLLKEERLSGASLLILANKQDINGALT---------PTEIAKVLNLEAMDKTRH-WKIVGC  158 (185)
Q Consensus        90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~~  158 (185)
                      |||++++.+|+.+ ..|+..+...  .++.|+++|+||+|+.+...         ...+....+.. ++...+ .+|++|
T Consensus        83 vyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~-~a~~~~~~~~~E~  159 (182)
T cd04172          83 CFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGAN-MAKQIGAATYIEC  159 (182)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHH-HHHHcCCCEEEEC
Confidence            9999999999997 5676666543  35799999999999854210         00111111111 122245 489999


Q ss_pred             cccCCCC-HHHHHHHHHHHHh
Q 029920          159 SAYTGEG-LLEGFDWLVQDIA  178 (185)
Q Consensus       159 Sa~~~~~-i~~l~~~l~~~~~  178 (185)
                      ||++|.| ++++|..+.+.+.
T Consensus       160 SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         160 SALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             CcCCCCCCHHHHHHHHHHHHh
Confidence            9999998 9999999988643

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04136 Rap_like Rap-like subfamily

Probab=99.97  E-value=2.7e-30  Score=177.47  Aligned_cols=156  Identities=18%  Similarity=0.252  Sum_probs=122.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc-eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG-FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD   92 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   92 (185)
                      +||+++|++|||||||++++.++.+. .+.+|.+ .....+..++  ..+.+|||||++.+...+..+++.+|++++|+|
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS   81 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence            79999999999999999999987764 3445554 2233455554  567889999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH-HHHHHhcCcccccCccceEEEeecccCCCCHHHHHH
Q 029920           93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP-TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFD  171 (185)
Q Consensus        93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (185)
                      ++++.+++....|+..+.......+.|+++|+||+|+...... .+....+.    .. .+.+++++||++|.|++++|+
T Consensus        82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~-~~~~~~~~Sa~~~~~v~~l~~  156 (163)
T cd04136          82 ITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALA----RQ-WGCPFYETSAKSKINVDEVFA  156 (163)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHH----HH-cCCeEEEecCCCCCCHHHHHH
Confidence            9999999999998888876655567999999999998643221 11111111    11 336899999999999999999


Q ss_pred             HHHHHH
Q 029920          172 WLVQDI  177 (185)
Q Consensus       172 ~l~~~~  177 (185)
                      ++.+.+
T Consensus       157 ~l~~~~  162 (163)
T cd04136         157 DLVRQI  162 (163)
T ss_pred             HHHHhc
Confidence            998754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.97  E-value=7.6e-30  Score=176.14  Aligned_cols=158  Identities=21%  Similarity=0.374  Sum_probs=126.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      ..+||+++|++|+|||||++++.+..+. .+.++.+...  ..+..++  +.+.+||+||++.+...+..+++++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            4689999999999999999999988875 4566666433  3444444  678999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      |+|++++++|..+..|+..+... ...+.|+++|+||+|+.+..  ..++......      ....+++++||++|.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~v~  154 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALAD------EYGIKFLETSAKANINVE  154 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHH------HcCCEEEEEeCCCCCCHH
Confidence            99999999999999888877654 33578999999999997532  2222222211      145689999999999999


Q ss_pred             HHHHHHHHHHhh
Q 029920          168 EGFDWLVQDIAS  179 (185)
Q Consensus       168 ~l~~~l~~~~~~  179 (185)
                      ++|+++.+.+.+
T Consensus       155 ~~~~~i~~~~~~  166 (167)
T cd01867         155 EAFFTLAKDIKK  166 (167)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04175 Rap1 Rap1 subgroup

Probab=99.97  E-value=3.8e-30  Score=177.08  Aligned_cols=157  Identities=18%  Similarity=0.248  Sum_probs=124.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      .+||+++|.+|||||||++++..+.+. .+.+|.+.. ...+..++  +.+.+|||||++.+..++..+++.+|++++|+
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            369999999999999999999877664 345565532 23444543  56789999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (185)
                      |++++++|+.+..|+..+.......+.|+++++||+|+.....  ..+.. .+.     ...+++++++||++|.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~-----~~~~~~~~~~Sa~~~~~v~~~  154 (164)
T cd04175          81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQ-NLA-----RQWGCAFLETSAKAKINVNEI  154 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHH-HHH-----HHhCCEEEEeeCCCCCCHHHH
Confidence            9999999999999888887765556899999999999865322  12211 111     113468999999999999999


Q ss_pred             HHHHHHHHh
Q 029920          170 FDWLVQDIA  178 (185)
Q Consensus       170 ~~~l~~~~~  178 (185)
                      |.++.+.+.
T Consensus       155 ~~~l~~~l~  163 (164)
T cd04175         155 FYDLVRQIN  163 (164)
T ss_pred             HHHHHHHhh
Confidence            999998764

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.97  E-value=5.3e-30  Score=176.65  Aligned_cols=156  Identities=22%  Similarity=0.362  Sum_probs=123.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      +||+++|++|||||||++++++..+. .+.++.+...  ..+..+  ...+++|||||++.+..++..+++.+|++++|+
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999998874 4556666433  334443  478899999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhcccc----CCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERL----SGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~----~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      |++++.+++....|+..+......    .+.|+++|+||+|+.+.  ....+... +..     ..+.+++++||++|.|
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~-----~~~~~~~~~Sa~~~~g  154 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRL-WAE-----SKGFKYFETSACTGEG  154 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHH-HHH-----HcCCeEEEEECCCCCC
Confidence            999999999998888888765432    46899999999998632  12222222 111     1346799999999999


Q ss_pred             HHHHHHHHHHHHh
Q 029920          166 LLEGFDWLVQDIA  178 (185)
Q Consensus       166 i~~l~~~l~~~~~  178 (185)
                      +++++++|.+.+.
T Consensus       155 i~~l~~~l~~~l~  167 (168)
T cd04119         155 VNEMFQTLFSSIV  167 (168)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=4.6e-31  Score=172.86  Aligned_cols=164  Identities=23%  Similarity=0.400  Sum_probs=136.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccC-cc--eEEEEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPT-LG--FNIKTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t-~~--~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      ....+||+++|.+|+|||+|+-++..+.+....++ ++  +..+.+.++  ..++.+|||+|+++|+.+...|++++.++
T Consensus         8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi   87 (209)
T KOG0080|consen    8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI   87 (209)
T ss_pred             cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence            34569999999999999999999999999877765 66  445555554  47899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      |+|||++.+++|.++..|+.++-.+...+++-.++|+||+|..+.   +.+....+...+. .+.+-|+++||++..|+.
T Consensus        88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~---R~V~reEG~kfAr-~h~~LFiE~SAkt~~~V~  163 (209)
T KOG0080|consen   88 ILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESE---RVVDREEGLKFAR-KHRCLFIECSAKTRENVQ  163 (209)
T ss_pred             EEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhc---ccccHHHHHHHHH-hhCcEEEEcchhhhccHH
Confidence            999999999999999999999888877778889999999996432   2233333333333 378889999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 029920          168 EGFDWLVQDIASR  180 (185)
Q Consensus       168 ~l~~~l~~~~~~~  180 (185)
                      ..|+.++..+.+-
T Consensus       164 ~~FeelveKIi~t  176 (209)
T KOG0080|consen  164 CCFEELVEKIIET  176 (209)
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999988764

>cd04128 Spg1 Spg1p

Probab=99.97  E-value=4.1e-30  Score=179.61  Aligned_cols=159  Identities=21%  Similarity=0.295  Sum_probs=123.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      +||+++|+.|+|||||++++.++.+. .+.+|.+...  ..+..++  +.+.+|||+|++.+...+..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999988775 4778887544  4555555  67999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC---HHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT---PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      |++++++|+.+..|+..+.... ....| ++|+||+|+.....   .+.... ... .++...+++++++||++|.|+++
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~-~~~-~~a~~~~~~~~e~SAk~g~~v~~  156 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEITK-QAR-KYAKAMKAPLIFCSTSHSINVQK  156 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhHH-HHH-HHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999888876542 23466 67899999853211   111111 111 11222457899999999999999


Q ss_pred             HHHHHHHHHhh
Q 029920          169 GFDWLVQDIAS  179 (185)
Q Consensus       169 l~~~l~~~~~~  179 (185)
                      +|+++.+.+.+
T Consensus       157 lf~~l~~~l~~  167 (182)
T cd04128         157 IFKIVLAKAFD  167 (182)
T ss_pred             HHHHHHHHHHh
Confidence            99999988754

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd01865 Rab3 Rab3 subfamily

Probab=99.97  E-value=1.2e-29  Score=174.76  Aligned_cols=155  Identities=19%  Similarity=0.358  Sum_probs=122.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      +||+++|++|||||||++++.+..+. .+.++.+...  ..+..+  ...+.+|||||++.+...+..+++.+|++++|+
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999998875 4566666433  233333  368999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (185)
                      |++++++++.+..|+..+... ...+.|+++|+||+|+.+...  .++......      ..+++++++||++|.|++++
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gv~~l  154 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQLAD------QLGFEFFEASAKENINVKQV  154 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHHHHH------HcCCEEEEEECCCCCCHHHH
Confidence            999999999998888776543 334689999999999865422  222221111      14457999999999999999


Q ss_pred             HHHHHHHHh
Q 029920          170 FDWLVQDIA  178 (185)
Q Consensus       170 ~~~l~~~~~  178 (185)
                      |+++.+.+.
T Consensus       155 ~~~l~~~~~  163 (165)
T cd01865         155 FERLVDIIC  163 (165)
T ss_pred             HHHHHHHHH
Confidence            999998764

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04131 Rnd Rnd subfamily

Probab=99.97  E-value=7.8e-30  Score=177.57  Aligned_cols=160  Identities=19%  Similarity=0.249  Sum_probs=120.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      ++||+++|++|+|||||++++.++.++ .+.||.+... ..+..++  +.+.+|||+|++.+..+...+++++|++++||
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            479999999999999999999988875 5566665332 2344443  77999999999999999999999999999999


Q ss_pred             eCCCcccHHHH-HHHHHHHHhccccCCCeEEEEeecCCCCCCCCH---------HHHHHhcCcccccCccce-EEEeecc
Q 029920           92 DSSDLRRLDDC-KMELDNLLKEERLSGASLLILANKQDINGALTP---------TEIAKVLNLEAMDKTRHW-KIVGCSA  160 (185)
Q Consensus        92 d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa  160 (185)
                      |+++++||+.+ ..|+..+...  .++.|+++|+||+|+.+....         ..+....+.. ++...+. ++++|||
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~--~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~-~a~~~~~~~~~E~SA  157 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEF--CPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCA-IAKQLGAEIYLECSA  157 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHH--CCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHH-HHHHhCCCEEEECcc
Confidence            99999999996 5676666543  357999999999998542100         0011111111 1222454 7999999


Q ss_pred             cCCCC-HHHHHHHHHHHHh
Q 029920          161 YTGEG-LLEGFDWLVQDIA  178 (185)
Q Consensus       161 ~~~~~-i~~l~~~l~~~~~  178 (185)
                      ++|.| ++++|..+.....
T Consensus       158 ~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         158 FTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             CcCCcCHHHHHHHHHHHHh
Confidence            99995 9999999988543

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.97  E-value=5.6e-30  Score=176.08  Aligned_cols=156  Identities=17%  Similarity=0.251  Sum_probs=122.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce-EEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF-NIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~-~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      .+||+++|++|+|||||++++.+..+. .+.++.+. .......++  ..+.+|||||++++..++..+++.+|++++|+
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   81 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF   81 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence            589999999999999999999887663 34444442 222334444  67889999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (185)
                      |++++++++....|+..+.......+.|+++++||+|+.....  ..+.....      ...+.+++++||++|.|++++
T Consensus        82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~i~~l  155 (164)
T cd04145          82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELA------RKLKIPYIETSAKDRLNVDKA  155 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHH------HHcCCcEEEeeCCCCCCHHHH
Confidence            9999999999999888877654455789999999999865422  12221111      113468999999999999999


Q ss_pred             HHHHHHHH
Q 029920          170 FDWLVQDI  177 (185)
Q Consensus       170 ~~~l~~~~  177 (185)
                      |+++++.+
T Consensus       156 ~~~l~~~~  163 (164)
T cd04145         156 FHDLVRVI  163 (164)
T ss_pred             HHHHHHhh
Confidence            99998765

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04124 RabL2 RabL2 subfamily

Probab=99.97  E-value=9.3e-30  Score=174.73  Aligned_cols=155  Identities=15%  Similarity=0.273  Sum_probs=120.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcceEE--EEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLGFNI--KTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      +||+++|++|||||||++++.+..+.. ..++.+...  .....+  ...+.+|||||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            589999999999999999998887743 334444322  223333  467889999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHH
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFD  171 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (185)
                      |++++.+++....|+..+...  .++.|+++++||+|+.... ..+.. .+     ....+++++++||++|.|++++|+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~-~~-----~~~~~~~~~~~Sa~~~~gv~~l~~  151 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKF-NF-----AEKHNLPLYYVSAADGTNVVKLFQ  151 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHH-HH-----HHHcCCeEEEEeCCCCCCHHHHHH
Confidence            999999999988888777543  3478999999999984321 11111 11     111356899999999999999999


Q ss_pred             HHHHHHhhh
Q 029920          172 WLVQDIASR  180 (185)
Q Consensus       172 ~l~~~~~~~  180 (185)
                      .+.+.+.++
T Consensus       152 ~l~~~~~~~  160 (161)
T cd04124         152 DAIKLAVSY  160 (161)
T ss_pred             HHHHHHHhc
Confidence            999887654

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.97  E-value=1.9e-29  Score=174.55  Aligned_cols=157  Identities=21%  Similarity=0.339  Sum_probs=123.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD   92 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   92 (185)
                      ||+++|++|||||||++++.++.+. .+.+|.+...  ..+..++  ..+++|||||++.+...+..+++.+|++++|+|
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            7999999999999999999998885 5667776443  3344444  679999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH---HHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920           93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP---TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus        93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (185)
                      +++++++.....|+..+.......+.|+++|+||+|+.+....   ++....+.    .. ...+++++||++|.|++++
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~----~~-~~~~~~e~Sa~~g~~v~~l  156 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLA----AE-MQAEYWSVSALSGENVREF  156 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHH----HH-cCCeEEEEECCCCCCHHHH
Confidence            9999999999998888766543335789999999998543221   11111111    11 3457899999999999999


Q ss_pred             HHHHHHHHhh
Q 029920          170 FDWLVQDIAS  179 (185)
Q Consensus       170 ~~~l~~~~~~  179 (185)
                      |+.+.+.+.+
T Consensus       157 f~~l~~~~~~  166 (170)
T cd04108         157 FFRVAALTFE  166 (170)
T ss_pred             HHHHHHHHHH
Confidence            9999987743

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04112 Rab26 Rab26 subfamily

Probab=99.97  E-value=2e-29  Score=177.62  Aligned_cols=159  Identities=23%  Similarity=0.397  Sum_probs=124.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc--ccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS--VISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~--~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      +||+++|++|||||||++++.+..+.  .+.++.+...  ..+..++  ..+.+|||||++.+...+..+++.+|++++|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            58999999999999999999988774  4455555333  2344444  6899999999999998889999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      +|++++.+++++..|+..+... ...+.|+++|+||+|+....  ...+... +.     ...+.+++++||++|.|+++
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~-l~-----~~~~~~~~e~Sa~~~~~v~~  153 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGER-LA-----KEYGVPFMETSAKTGLNVEL  153 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHHH-HH-----HHcCCeEEEEeCCCCCCHHH
Confidence            9999999999998888777654 33468999999999985322  2222222 11     11346899999999999999


Q ss_pred             HHHHHHHHHhhhcc
Q 029920          169 GFDWLVQDIASRIY  182 (185)
Q Consensus       169 l~~~l~~~~~~~~~  182 (185)
                      +|++|.+.+.+..+
T Consensus       154 l~~~l~~~~~~~~~  167 (191)
T cd04112         154 AFTAVAKELKHRKY  167 (191)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999998877643

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.97  E-value=1.8e-29  Score=181.51  Aligned_cols=165  Identities=18%  Similarity=0.246  Sum_probs=124.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      .-..+||+++|+.|+|||||++++.++.+. .+.||.+.... .+..+  .+.+.+|||+|++.+..+...+++++|+++
T Consensus        10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI   89 (232)
T cd04174          10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL   89 (232)
T ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence            345689999999999999999999988775 55677663332 23333  378999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEeecCCCCCCCC---------HHHHHHhcCcccccCccce-EEEe
Q 029920           89 WVVDSSDLRRLDDC-KMELDNLLKEERLSGASLLILANKQDINGALT---------PTEIAKVLNLEAMDKTRHW-KIVG  157 (185)
Q Consensus        89 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~~-~~~~  157 (185)
                      +|||++++++|+.+ ..|+..+....  ++.|+++|+||+|+.+...         ...+....+. .++...++ +|++
T Consensus        90 lVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~-~~a~~~~~~~~~E  166 (232)
T cd04174          90 LCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGC-ALAKQLGAEVYLE  166 (232)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHH-HHHHHcCCCEEEE
Confidence            99999999999985 66776665432  4789999999999854210         0111111111 12222455 6999


Q ss_pred             ecccCCC-CHHHHHHHHHHHHhhh
Q 029920          158 CSAYTGE-GLLEGFDWLVQDIASR  180 (185)
Q Consensus       158 ~Sa~~~~-~i~~l~~~l~~~~~~~  180 (185)
                      |||++|. |++++|..++..+.++
T Consensus       167 tSAktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         167 CSAFTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             ccCCcCCcCHHHHHHHHHHHHHHh
Confidence            9999998 8999999999887553

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.97  E-value=1.1e-29  Score=174.73  Aligned_cols=157  Identities=18%  Similarity=0.287  Sum_probs=122.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcc-eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLG-FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD   92 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   92 (185)
                      +||+++|++|+|||||++++.+..+.. ..++.. .....+..++  ..+.+|||||++++...+..+++.+|++++|+|
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence            489999999999999999999877643 334443 2223334433  678899999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920           93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF  170 (185)
Q Consensus        93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (185)
                      ++++++++.+..|+..+.......+.|+++|+||+|+....  ..+.......      ..+.+++++||++|.|++++|
T Consensus        81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~l~  154 (164)
T smart00173       81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELAR------QWGCPFLETSAKERVNVDEAF  154 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHH------HcCCEEEEeecCCCCCHHHHH
Confidence            99999999998888877766555578999999999986532  2222221111      134689999999999999999


Q ss_pred             HHHHHHHhh
Q 029920          171 DWLVQDIAS  179 (185)
Q Consensus       171 ~~l~~~~~~  179 (185)
                      ++|++.+.+
T Consensus       155 ~~l~~~~~~  163 (164)
T smart00173      155 YDLVREIRK  163 (164)
T ss_pred             HHHHHHHhh
Confidence            999987653

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.97  E-value=3.2e-30  Score=166.48  Aligned_cols=172  Identities=34%  Similarity=0.568  Sum_probs=156.2

Q ss_pred             HHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCC-cccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcC
Q 029920            5 SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDT-SVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQ   83 (185)
Q Consensus         5 ~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~   83 (185)
                      -|+.+.+ =.....+.++|..++|||||+|..+.+.+ ....||.++..+.+.-+++.+.+||.||++.|+++|+.|.++
T Consensus        10 ~wi~~~f-~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~   88 (186)
T KOG0075|consen   10 VWICNSF-WKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRG   88 (186)
T ss_pred             HHHHHHH-HHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhc
Confidence            4555555 34568899999999999999999877555 578899999999999999999999999999999999999999


Q ss_pred             CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCC
Q 029920           84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTG  163 (185)
Q Consensus        84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (185)
                      +++++||+|+.+++.+...+..+..++..+...++|++|++||.|+..+.....+.+.++...... ..+-+|.+|+++.
T Consensus        89 v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitd-REvcC~siScke~  167 (186)
T KOG0075|consen   89 VSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITD-REVCCFSISCKEK  167 (186)
T ss_pred             CcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCcccccc-ceEEEEEEEEcCC
Confidence            999999999999999999999999999999899999999999999999999999999998877766 7788999999999


Q ss_pred             CCHHHHHHHHHHHHh
Q 029920          164 EGLLEGFDWLVQDIA  178 (185)
Q Consensus       164 ~~i~~l~~~l~~~~~  178 (185)
                      .|++.+.+||.+.-.
T Consensus       168 ~Nid~~~~Wli~hsk  182 (186)
T KOG0075|consen  168 VNIDITLDWLIEHSK  182 (186)
T ss_pred             ccHHHHHHHHHHHhh
Confidence            999999999998654

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.97  E-value=2.8e-30  Score=176.58  Aligned_cols=154  Identities=18%  Similarity=0.179  Sum_probs=114.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcceEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLGFNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDS   93 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   93 (185)
                      +||+++|+.|||||||+.++..+.+.. +.++.+.....+..++  +.+.+|||+|++.     ..+++.+|++++|||+
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~   75 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL   75 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence            589999999999999999988777654 3344443345566666  6789999999975     2356789999999999


Q ss_pred             CCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHH
Q 029920           94 SDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL  173 (185)
Q Consensus        94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (185)
                      +++++|+.+..|+..+.......+.|+++|+||+|+.... .+++..............++|++|||++|.|++++|..+
T Consensus        76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~-~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~  154 (158)
T cd04103          76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN-PRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA  154 (158)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC-CcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence            9999999999988888766544678999999999984311 111111111111112135789999999999999999998


Q ss_pred             HHH
Q 029920          174 VQD  176 (185)
Q Consensus       174 ~~~  176 (185)
                      .+.
T Consensus       155 ~~~  157 (158)
T cd04103         155 AQK  157 (158)
T ss_pred             Hhh
Confidence            864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd01864 Rab19 Rab19 subfamily

Probab=99.97  E-value=9.5e-30  Score=175.29  Aligned_cols=156  Identities=23%  Similarity=0.380  Sum_probs=122.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      ..+||+++|++|+|||||++++.+..+.. ..++.+  .....+.+++  ..+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            46899999999999999999998877653 445554  3344556665  578999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      |+|++++.++..+..|+..+... ...+.|+++|+||+|+.....  .++......     ......++++||++|.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~  155 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAE-----KNGMLAVLETSAKESQNVE  155 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCcEEEEEECCCCCCHH
Confidence            99999999999988888887654 335789999999999865422  222222111     1133468999999999999


Q ss_pred             HHHHHHHHH
Q 029920          168 EGFDWLVQD  176 (185)
Q Consensus       168 ~l~~~l~~~  176 (185)
                      ++++++.+.
T Consensus       156 ~~~~~l~~~  164 (165)
T cd01864         156 EAFLLMATE  164 (165)
T ss_pred             HHHHHHHHh
Confidence            999999865

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.97  E-value=2e-30  Score=180.12  Aligned_cols=158  Identities=18%  Similarity=0.270  Sum_probs=117.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD   92 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   92 (185)
                      +||+++|++|||||||+.++..+.+. .+.+|.+... ..+..++  ..+.+|||||++.+...+..+++++|++|+|||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   81 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS   81 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence            79999999999999999999988774 5566665322 2334443  678999999999999999999999999999999


Q ss_pred             CCCcccHHHHHH-HHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHh--------cCcccccCccceEEEeecccC
Q 029920           93 SSDLRRLDDCKM-ELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKV--------LNLEAMDKTRHWKIVGCSAYT  162 (185)
Q Consensus        93 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~Sa~~  162 (185)
                      ++++++|+.+.. |+..+...  .++.|+++|+||+|+.+... .+.....        ............++++|||++
T Consensus        82 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  159 (174)
T cd01871          82 LVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  159 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999865 55544432  35799999999999854321 1111111        001111121235899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 029920          163 GEGLLEGFDWLVQD  176 (185)
Q Consensus       163 ~~~i~~l~~~l~~~  176 (185)
                      |.|++++|+.+++.
T Consensus       160 ~~~i~~~f~~l~~~  173 (174)
T cd01871         160 QKGLKTVFDEAIRA  173 (174)
T ss_pred             cCCHHHHHHHHHHh
Confidence            99999999998864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04144 Ras2 Ras2 subfamily

Probab=99.97  E-value=1.7e-29  Score=177.88  Aligned_cols=158  Identities=17%  Similarity=0.248  Sum_probs=122.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDS   93 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   93 (185)
                      ||+++|.+|+|||||+++|+.+.+. .+.+|.+.. ...+..++  +.+.+|||||++.+...+..+++.+|++++|||+
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI   80 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence            5899999999999999999988774 345555532 23334444  5689999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhccc--cCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920           94 SDLRRLDDCKMELDNLLKEER--LSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus        94 ~~~~s~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (185)
                      +++.+|+.+..|+..+.....  ..+.|+++|+||+|+.....  ..+.. .+    . ...+++++++||++|.|++++
T Consensus        81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~-~~----~-~~~~~~~~e~SAk~~~~v~~l  154 (190)
T cd04144          81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGA-AL----A-RRLGCEFIEASAKTNVNVERA  154 (190)
T ss_pred             CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHH-HH----H-HHhCCEEEEecCCCCCCHHHH
Confidence            999999999888887765432  35789999999999864322  22211 11    1 113568999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 029920          170 FDWLVQDIASRI  181 (185)
Q Consensus       170 ~~~l~~~~~~~~  181 (185)
                      |+++++.+.++.
T Consensus       155 ~~~l~~~l~~~~  166 (190)
T cd04144         155 FYTLVRALRQQR  166 (190)
T ss_pred             HHHHHHHHHHhh
Confidence            999999876554

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.97  E-value=3.7e-29  Score=170.65  Aligned_cols=156  Identities=40%  Similarity=0.667  Sum_probs=129.9

Q ss_pred             EEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc
Q 029920           19 ILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR   97 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   97 (185)
                      |+++|++|||||||++++.+..+. .+.++.+.....+..+...+.+||+||++.+...+..++..+|++++|+|++++.
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~   81 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT   81 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence            789999999999999999998774 5667777766667777899999999999999999999999999999999999988


Q ss_pred             cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHH
Q 029920           98 RLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ  175 (185)
Q Consensus        98 s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (185)
                      ++.....++..+.......++|+++|+||+|+.......+....+....... ..++++++|+++|.|+++++++|.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159          82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITD-REVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccC-CceEEEEEEeccCCChHHHHHHHhh
Confidence            8888888888877655556799999999999876655555555544333322 4578999999999999999999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04176 Rap2 Rap2 subgroup

Probab=99.97  E-value=1.8e-29  Score=173.46  Aligned_cols=156  Identities=19%  Similarity=0.299  Sum_probs=121.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc-eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG-FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      .+||+++|.+|+|||||++++..+.+. .+.+|.+ .....+..++  ..+++|||||++.+..++..+++++|++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            379999999999999999999988775 3445443 3333444444  56889999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (185)
                      |++++++|+.+..|+..+.......++|+++|+||+|+.....  ..+. ..+.     ...+.+++++||++|.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~-~~~~-----~~~~~~~~~~Sa~~~~~v~~l  154 (163)
T cd04176          81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEG-RALA-----EEWGCPFMETSAKSKTMVNEL  154 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHH-HHHH-----HHhCCEEEEecCCCCCCHHHH
Confidence            9999999999999888887654446799999999999854322  1111 1111     113468999999999999999


Q ss_pred             HHHHHHHH
Q 029920          170 FDWLVQDI  177 (185)
Q Consensus       170 ~~~l~~~~  177 (185)
                      |.++++.+
T Consensus       155 ~~~l~~~l  162 (163)
T cd04176         155 FAEIVRQM  162 (163)
T ss_pred             HHHHHHhc
Confidence            99998754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.97  E-value=2.7e-29  Score=173.13  Aligned_cols=157  Identities=20%  Similarity=0.381  Sum_probs=123.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce--EEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF--NIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      .+||+++|++|||||||++++.+..+. .+.++.+.  ....+..++  ..+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            479999999999999999999988775 34455553  333444444  5789999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      +|++++++|..+..|+..+... ..++.|+++++||+|+.....  .++......      ..+++++++||++|.|+++
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~v~~  154 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTDKRVVDYSEAQEFAD------ELGIPFLETSAKNATNVEQ  154 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEEChhcccccCCCHHHHHHHHH------HcCCeEEEEECCCCcCHHH
Confidence            9999999999999988877554 234689999999999854322  222222111      1456899999999999999


Q ss_pred             HHHHHHHHHhh
Q 029920          169 GFDWLVQDIAS  179 (185)
Q Consensus       169 l~~~l~~~~~~  179 (185)
                      +|+++.+.+.+
T Consensus       155 ~~~~i~~~~~~  165 (166)
T cd01869         155 AFMTMAREIKK  165 (166)
T ss_pred             HHHHHHHHHHh
Confidence            99999988753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.9e-29  Score=160.84  Aligned_cols=166  Identities=45%  Similarity=0.846  Sum_probs=156.5

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD   92 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   92 (185)
                      ..+.++|+.+|..++||||++..|+-+......||.++..+.+.+.+..|++||.+|+...+..|.+|+.+..++|||+|
T Consensus        14 ~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~D   93 (180)
T KOG0071|consen   14 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD   93 (180)
T ss_pred             CcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEe
Confidence            56689999999999999999999999999899999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHH
Q 029920           93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDW  172 (185)
Q Consensus        93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (185)
                      ..+....++++..+..++..+.-.+.++++.+||-|++++-.+.++.+.++.+.+.. ..|-+.++||.+|.++.|-+.|
T Consensus        94 sa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~-~~W~vqp~~a~~gdgL~eglsw  172 (180)
T KOG0071|consen   94 SADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRD-RNWYVQPSCALSGDGLKEGLSW  172 (180)
T ss_pred             ccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccC-CccEeeccccccchhHHHHHHH
Confidence            999999999999999999988888899999999999999999999999999888655 7888999999999999999999


Q ss_pred             HHHHHhh
Q 029920          173 LVQDIAS  179 (185)
Q Consensus       173 l~~~~~~  179 (185)
                      +.+.+.+
T Consensus       173 lsnn~~~  179 (180)
T KOG0071|consen  173 LSNNLKE  179 (180)
T ss_pred             HHhhccC
Confidence            9887643

>cd04110 Rab35 Rab35 subfamily

Probab=99.97  E-value=4.5e-29  Score=176.86  Aligned_cols=159  Identities=21%  Similarity=0.338  Sum_probs=126.5

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE--EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN--IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      +..++|+++|++|+|||||++++.+..+. .+.+|.+..  ...+..++  ..+.+||+||++.+...+..+++.+|+++
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            45799999999999999999999998875 456676643  33444444  57899999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL  166 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (185)
                      +|+|++++++|+.+..|+..+...  ....|+++|+||+|+.....  ..+......      ..+++++++||++|.|+
T Consensus        84 lv~D~~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~------~~~~~~~e~Sa~~~~gi  155 (199)
T cd04110          84 VVYDVTNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYKFAG------QMGISLFETSAKENINV  155 (199)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHHHHH------HcCCEEEEEECCCCcCH
Confidence            999999999999999888876553  24689999999999865422  222222111      13468999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 029920          167 LEGFDWLVQDIASR  180 (185)
Q Consensus       167 ~~l~~~l~~~~~~~  180 (185)
                      +++|++|.+.+.+.
T Consensus       156 ~~lf~~l~~~~~~~  169 (199)
T cd04110         156 EEMFNCITELVLRA  169 (199)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999987653

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04116 Rab9 Rab9 subfamily

Probab=99.97  E-value=3.2e-29  Score=173.45  Aligned_cols=158  Identities=17%  Similarity=0.291  Sum_probs=123.5

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcceE--EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLGFN--IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ...+||+++|++|||||||++++.+..+.. ..++.+..  ...+..++  +.+.+||+||++.+..++..+++.+|+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            457999999999999999999999887753 45566543  23344443  67889999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccc---cCCCeEEEEeecCCCCCC-CCHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEER---LSGASLLILANKQDINGA-LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE  164 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (185)
                      +|||++++++++.+..|...+.....   ..+.|+++++||+|+... ....+..+...     .....+++++||++|.
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~  157 (170)
T cd04116          83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCR-----ENGDYPYFETSAKDAT  157 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHH-----HCCCCeEEEEECCCCC
Confidence            99999999999999888887765432   246899999999998632 23333333222     1123579999999999


Q ss_pred             CHHHHHHHHHHH
Q 029920          165 GLLEGFDWLVQD  176 (185)
Q Consensus       165 ~i~~l~~~l~~~  176 (185)
                      |++++|+++++.
T Consensus       158 ~v~~~~~~~~~~  169 (170)
T cd04116         158 NVAAAFEEAVRR  169 (170)
T ss_pred             CHHHHHHHHHhh
Confidence            999999998864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04109 Rab28 Rab28 subfamily

Probab=99.97  E-value=3.1e-29  Score=179.68  Aligned_cols=158  Identities=20%  Similarity=0.294  Sum_probs=123.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE--EEEEEEc---CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN--IKTVTYQ---KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~--~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      +||+++|++|||||||+++|.+..+. .+.+|.+..  ...+..+   .+.+.+|||||++.+...+..+++.+|++++|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            58999999999999999999988775 456676643  3344443   47899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhccc--cCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEER--LSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      ||++++++|+.+..|+..+.....  ..+.|+++|+||+|+.+... ..+....+..     ..+++++++||++|.|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~-----~~~~~~~~iSAktg~gv~  155 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQ-----ANGMESCLVSAKTGDRVN  155 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEECCCCCCHH
Confidence            999999999999888777765432  23578999999999864321 1111111111     144678999999999999


Q ss_pred             HHHHHHHHHHhh
Q 029920          168 EGFDWLVQDIAS  179 (185)
Q Consensus       168 ~l~~~l~~~~~~  179 (185)
                      ++|+++++.+..
T Consensus       156 ~lf~~l~~~l~~  167 (215)
T cd04109         156 LLFQQLAAELLG  167 (215)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04117 Rab15 Rab15 subfamily

Probab=99.97  E-value=3.4e-29  Score=171.93  Aligned_cols=154  Identities=21%  Similarity=0.345  Sum_probs=121.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      ++|+++|++|+|||||++++.++.+. .+.+|.+...  ..+..++  ..+.+||++|++.+...+..++..+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999988775 4567776433  3455554  67899999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH-HHHHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP-TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF  170 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (185)
                      |++++++|+.+..|+..+... ...+.|+++|+||.|+...... .+....+..     ..+.+++++||++|.|++++|
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~v~~~f  154 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKLAK-----EYGMDFFETSACTNSNIKESF  154 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHH
Confidence            999999999999888877554 2346899999999998654321 111222211     134679999999999999999


Q ss_pred             HHHHHH
Q 029920          171 DWLVQD  176 (185)
Q Consensus       171 ~~l~~~  176 (185)
                      .+|.+.
T Consensus       155 ~~l~~~  160 (161)
T cd04117         155 TRLTEL  160 (161)
T ss_pred             HHHHhh
Confidence            999865

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04111 Rab39 Rab39 subfamily

Probab=99.97  E-value=3.2e-29  Score=178.95  Aligned_cols=161  Identities=24%  Similarity=0.434  Sum_probs=126.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcceE--EEEEEEc---CeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLGFN--IKTVTYQ---KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~~~--~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      .+||+++|++|+|||||++++.+..+.. ..+|.+..  ...+...   .+.+++|||||++.+...+..+++.+|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            5899999999999999999999888754 34555533  3334432   3689999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      |||++++++|+.+..|+..+.........|+++|+||+|+..... ..+....+.     ...+++++++||++|.|+++
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~g~~v~e  156 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLA-----KDLGMKYIETSARTGDNVEE  156 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHH-----HHhCCEEEEEeCCCCCCHHH
Confidence            999999999999999999887664444678999999999865322 111122221     11457899999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 029920          169 GFDWLVQDIASRI  181 (185)
Q Consensus       169 l~~~l~~~~~~~~  181 (185)
                      +|++|.+.+.++.
T Consensus       157 ~f~~l~~~~~~~~  169 (211)
T cd04111         157 AFELLTQEIYERI  169 (211)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887654

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04134 Rho3 Rho3 subfamily

Probab=99.97  E-value=3.3e-30  Score=181.35  Aligned_cols=161  Identities=18%  Similarity=0.262  Sum_probs=121.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcceEEE-EEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLGFNIK-TVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD   92 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   92 (185)
                      .||+++|++|||||||++++.++.+.. +.+|.+.... .+..++  ..+.+|||+|++.+..++..++..+|++++|||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            379999999999999999999988854 5566653332 333333  689999999999998888889999999999999


Q ss_pred             CCCcccHHHHHH-HHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhc---------CcccccCccceEEEeecccC
Q 029920           93 SSDLRRLDDCKM-ELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVL---------NLEAMDKTRHWKIVGCSAYT  162 (185)
Q Consensus        93 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~Sa~~  162 (185)
                      ++++++|+.+.. |+..+...  .++.|+++|+||+|+.......+.....         ..........++++++||++
T Consensus        81 v~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  158 (189)
T cd04134          81 VDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL  158 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            999999998864 66665543  3479999999999996653322211110         11111122336899999999


Q ss_pred             CCCHHHHHHHHHHHHhh
Q 029920          163 GEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       163 ~~~i~~l~~~l~~~~~~  179 (185)
                      |.|++++|+++.+.+..
T Consensus       159 ~~~v~e~f~~l~~~~~~  175 (189)
T cd04134         159 NRGVNEAFTEAARVALN  175 (189)
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            99999999999988764

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01866 Rab2 Rab2 subfamily

Probab=99.97  E-value=6.7e-29  Score=171.58  Aligned_cols=158  Identities=20%  Similarity=0.323  Sum_probs=124.2

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      ..+||+++|++|+|||||++++.+..+.. ..++.+...  ..+..++  ..+.+||+||++.+......+++.+|++++
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~   82 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   82 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence            45899999999999999999999887753 344544332  3334443  689999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      |+|++++.++..+..|+..+... ..++.|+++|+||.|+....  ..++......      ..+++++++||+++.|++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~e~Sa~~~~~i~  155 (168)
T cd01866          83 VYDITRRETFNHLTSWLEDARQH-SNSNMTIMLIGNKCDLESRREVSYEEGEAFAK------EHGLIFMETSAKTASNVE  155 (168)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHH------HcCCEEEEEeCCCCCCHH
Confidence            99999999999999888877654 34579999999999986432  2222222221      145679999999999999


Q ss_pred             HHHHHHHHHHhh
Q 029920          168 EGFDWLVQDIAS  179 (185)
Q Consensus       168 ~l~~~l~~~~~~  179 (185)
                      ++|.++.+.+.+
T Consensus       156 ~~~~~~~~~~~~  167 (168)
T cd01866         156 EAFINTAKEIYE  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999987754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04125 RabA_like RabA-like subfamily

Probab=99.97  E-value=6.5e-29  Score=174.61  Aligned_cols=158  Identities=23%  Similarity=0.381  Sum_probs=125.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcceE--EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLGFN--IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      +||+++|++|+|||||++++.++.+.. +.+|.+..  ...+..++  +.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            589999999999999999999998864 66776643  33444443  67899999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (185)
                      |++++++|..+..|+..+... ...+.|+++++||+|+.+...  ..+.. .+.     ...+++++++||++|.|++++
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~-~~~~~~~ivv~nK~Dl~~~~~v~~~~~~-~~~-----~~~~~~~~evSa~~~~~i~~~  153 (188)
T cd04125          81 DVTDQESFENLKFWINEINRY-ARENVIKVIVANKSDLVNNKVVDSNIAK-SFC-----DSLNIPFFETSAKQSINVEEA  153 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECCCCcccccCCHHHHH-HHH-----HHcCCeEEEEeCCCCCCHHHH
Confidence            999999999999988877654 234589999999999864322  22221 111     113558999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 029920          170 FDWLVQDIASRI  181 (185)
Q Consensus       170 ~~~l~~~~~~~~  181 (185)
                      |+++.+.+.++.
T Consensus       154 f~~l~~~~~~~~  165 (188)
T cd04125         154 FILLVKLIIKRL  165 (188)
T ss_pred             HHHHHHHHHHHh
Confidence            999999886543

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.97  E-value=9.8e-30  Score=181.97  Aligned_cols=163  Identities=20%  Similarity=0.269  Sum_probs=122.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      ++||+|+|++|||||||++++.++.++ .+.||.+.... .+.+++  +.+.+|||+|++.+..++..+++.+|++++||
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            379999999999999999999988875 56677764432 344443  67899999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH-HH--------HHHhcCcccccCccc-eEEEeeccc
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP-TE--------IAKVLNLEAMDKTRH-WKIVGCSAY  161 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~~--------~~~~~~~~~~~~~~~-~~~~~~Sa~  161 (185)
                      |++++++|+.+..+|...+.. ..++.|+++|+||+|+.+.... ..        +....+.. ++...+ .+|++|||+
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~-~ak~~~~~~y~E~SAk  158 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTV-LAKQVGAVSYVECSSR  158 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHH-HHHHcCCCEEEEcCCC
Confidence            999999999997655544433 3467999999999998653211 11        11111111 222234 489999999


Q ss_pred             CCCC-HHHHHHHHHHHHhhh
Q 029920          162 TGEG-LLEGFDWLVQDIASR  180 (185)
Q Consensus       162 ~~~~-i~~l~~~l~~~~~~~  180 (185)
                      ++.| ++++|..+......+
T Consensus       159 ~~~~~V~~~F~~~~~~~~~~  178 (222)
T cd04173         159 SSERSVRDVFHVATVASLGR  178 (222)
T ss_pred             cCCcCHHHHHHHHHHHHHhc
Confidence            9985 999999998876543

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=6.7e-30  Score=165.64  Aligned_cols=163  Identities=24%  Similarity=0.301  Sum_probs=132.7

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDG   86 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~   86 (185)
                      ..+-.+||+++|..|+|||+|++++..+-++ ..+.|++  +..+++++++  .++++|||+|+++|++..+.|++.+++
T Consensus         3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha   82 (213)
T KOG0095|consen    3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA   82 (213)
T ss_pred             ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence            3456799999999999999999999988775 4566777  4455666654  789999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC-CCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA-LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      +|+|||++...+|+.+.+|+.++-.+ ...+.--|+|+||+|+.+. +.+..+-+.+.    .. .+..|.++||++..|
T Consensus        83 lilvydiscqpsfdclpewlreie~y-an~kvlkilvgnk~d~~drrevp~qigeefs----~~-qdmyfletsakea~n  156 (213)
T KOG0095|consen   83 LILVYDISCQPSFDCLPEWLREIEQY-ANNKVLKILVGNKIDLADRREVPQQIGEEFS----EA-QDMYFLETSAKEADN  156 (213)
T ss_pred             EEEEEecccCcchhhhHHHHHHHHHH-hhcceEEEeeccccchhhhhhhhHHHHHHHH----Hh-hhhhhhhhcccchhh
Confidence            99999999999999999999998777 3345677899999999765 22333333333    22 667799999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 029920          166 LLEGFDWLVQDIASR  180 (185)
Q Consensus       166 i~~l~~~l~~~~~~~  180 (185)
                      ++.+|..+.-.+...
T Consensus       157 ve~lf~~~a~rli~~  171 (213)
T KOG0095|consen  157 VEKLFLDLACRLISE  171 (213)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999988766543

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.97  E-value=4.4e-29  Score=171.33  Aligned_cols=152  Identities=15%  Similarity=0.306  Sum_probs=119.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEc----CeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQ----KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      +||+++|++|+|||||++++.++.+. .+.++.+...  ..+...    ...+++|||||++.+...+..+++.+|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            58999999999999999999988775 4456665433  333333    4789999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      |+|+++++++..+..|+..+..  ...+.|+++|+||+|+.....  ..+......      ..+++++++||++|.|++
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~--~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~~v~  152 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEA--ECGDIPMVLVQTKIDLLDQAVITNEEAEALAK------RLQLPLFRTSVKDDFNVT  152 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHH--hCCCCCEEEEEEChhcccccCCCHHHHHHHHH------HcCCeEEEEECCCCCCHH
Confidence            9999999999998888777644  235799999999999865322  222221111      145689999999999999


Q ss_pred             HHHHHHHHH
Q 029920          168 EGFDWLVQD  176 (185)
Q Consensus       168 ~l~~~l~~~  176 (185)
                      +++++|.+.
T Consensus       153 ~l~~~l~~~  161 (162)
T cd04106         153 ELFEYLAEK  161 (162)
T ss_pred             HHHHHHHHh
Confidence            999998764

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.97  E-value=1.2e-29  Score=178.14  Aligned_cols=156  Identities=21%  Similarity=0.285  Sum_probs=118.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEc---CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQ---KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      +||+++|++|+|||||++++.++.+. .+.++.+... ..+...   ...+.+|||||++.+...+..+++.+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   80 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY   80 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence            58999999999999999999988875 4445554332 223333   368999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHH-HHHHHHhccccCCCeEEEEeecCCCCCCCC------HHHHHHhcCcccccCccce-EEEeecccCC
Q 029920           92 DSSDLRRLDDCKM-ELDNLLKEERLSGASLLILANKQDINGALT------PTEIAKVLNLEAMDKTRHW-KIVGCSAYTG  163 (185)
Q Consensus        92 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  163 (185)
                      |++++++|+.+.. |+..+...  .++.|+++|+||+|+.....      ..+....     ... .+. +++++||++|
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~-----~~~-~~~~~~~e~Sa~~~  152 (187)
T cd04132          81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESV-----AKK-QGAFAYLECSAKTM  152 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHH-----HHH-cCCcEEEEccCCCC
Confidence            9999999998865 55444332  34789999999999865321      2121111     111 333 7999999999


Q ss_pred             CCHHHHHHHHHHHHhhh
Q 029920          164 EGLLEGFDWLVQDIASR  180 (185)
Q Consensus       164 ~~i~~l~~~l~~~~~~~  180 (185)
                      .|++++|+.+.+.+...
T Consensus       153 ~~v~~~f~~l~~~~~~~  169 (187)
T cd04132         153 ENVEEVFDTAIEEALKK  169 (187)
T ss_pred             CCHHHHHHHHHHHHHhh
Confidence            99999999999987654

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01863 Rab18 Rab18 subfamily

Probab=99.97  E-value=4.4e-29  Score=171.20  Aligned_cols=154  Identities=24%  Similarity=0.413  Sum_probs=123.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcceEEE--EEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLGFNIK--TVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      +||+++|++|||||||++++.+..+.. ..++.+....  .+.+++  ..+.+||+||++.+......+++.+|++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            589999999999999999999887753 5566654333  334443  68999999999999888899999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC-CHHHHHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL-TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF  170 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (185)
                      |++++.+++....|+..+.......+.|+++++||+|+.... ..++......      ..+++++++||++|.|+++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~~~  154 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR------KHNMLFIETSAKTRDGVQQAF  154 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH------HcCCEEEEEecCCCCCHHHHH
Confidence            999999999988888877766556689999999999987332 3333322221      146789999999999999999


Q ss_pred             HHHHHH
Q 029920          171 DWLVQD  176 (185)
Q Consensus       171 ~~l~~~  176 (185)
                      +.+.+.
T Consensus       155 ~~~~~~  160 (161)
T cd01863         155 EELVEK  160 (161)
T ss_pred             HHHHHh
Confidence            998875

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.97  E-value=7.1e-29  Score=180.56  Aligned_cols=156  Identities=21%  Similarity=0.274  Sum_probs=124.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc-eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG-FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD   92 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   92 (185)
                      +||+++|++|+|||||++++.++.+. .+.+|.+ +....+.+++  +.+.+|||+|++.+..++..++..+|++|+|||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd   80 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS   80 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence            58999999999999999999888775 4566665 3344455555  678899999999988888888999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhcc--------ccCCCeEEEEeecCCCCC--CCCHHHHHHhcCcccccCccceEEEeecccC
Q 029920           93 SSDLRRLDDCKMELDNLLKEE--------RLSGASLLILANKQDING--ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYT  162 (185)
Q Consensus        93 ~~~~~s~~~~~~~~~~~~~~~--------~~~~~~~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (185)
                      ++++++|+.+..|+..+....        ...+.|+++|+||+|+..  ....+++...+..     ...++++++||++
T Consensus        81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~-----~~~~~~~evSAkt  155 (247)
T cd04143          81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG-----DENCAYFEVSAKK  155 (247)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh-----cCCCEEEEEeCCC
Confidence            999999999988888876541        234789999999999864  3344444443321     1356799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 029920          163 GEGLLEGFDWLVQDI  177 (185)
Q Consensus       163 ~~~i~~l~~~l~~~~  177 (185)
                      |.|++++|++|.+..
T Consensus       156 g~gI~elf~~L~~~~  170 (247)
T cd04143         156 NSNLDEMFRALFSLA  170 (247)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999999865

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.97  E-value=5.2e-29  Score=172.44  Aligned_cols=158  Identities=19%  Similarity=0.351  Sum_probs=123.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE--EEEEEEcC--eEEEEEEcCCchhhH-HHHHhhhcCCCEEEE
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN--IKTVTYQK--YTLNIWDVGGQRTIR-SYWRNYFEQTDGLVW   89 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~-~~~~~~~~~~d~~i~   89 (185)
                      .++|+++|++|+|||||++++.+..++ .+.++.+..  ...+..++  +.+.+||+||++.+. .++..+++.+|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            589999999999999999999988775 455665533  33444544  789999999999886 567888999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecccC---CCC
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSAYT---GEG  165 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~  165 (185)
                      |||+++++++..+..|+..+.......+.|+++|+||+|+..... ..+....+..     ...++++++||++   +.|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~~~~  156 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFAD-----AHSMPLFETSAKDPSENDH  156 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHH-----HcCCcEEEEeccCCcCCCC
Confidence            999999999999999888777655456799999999999864332 1222222221     1447899999999   889


Q ss_pred             HHHHHHHHHHHHh
Q 029920          166 LLEGFDWLVQDIA  178 (185)
Q Consensus       166 i~~l~~~l~~~~~  178 (185)
                      ++++|..+++.++
T Consensus       157 i~~~f~~l~~~~~  169 (170)
T cd04115         157 VEAIFMTLAHKLK  169 (170)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988763

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.97  E-value=6.8e-29  Score=170.56  Aligned_cols=155  Identities=21%  Similarity=0.349  Sum_probs=124.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcceE--EEEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLGFN--IKTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      .+||+++|++|||||||++++.+..+.. ..++.+..  ...+.++  ...+.+||+||++.+...+..+++.+|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            4799999999999999999999998865 66666632  3344444  36889999999999998899999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      +|+++++++.....|+..+.... .++.|+++++||+|+....  ...+.......      .+++++++||++|.|+++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~v~~  153 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNA-SPNIIIALVGNKADLESKRQVSTEEAQEYADE------NGLLFFETSAKTGENVNE  153 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccCcCCHHHHHHHHHH------cCCEEEEEECCCCCCHHH
Confidence            99999999999998888876653 3679999999999986322  23332222211      346799999999999999


Q ss_pred             HHHHHHHHH
Q 029920          169 GFDWLVQDI  177 (185)
Q Consensus       169 l~~~l~~~~  177 (185)
                      +++++.+.+
T Consensus       154 l~~~l~~~l  162 (163)
T cd01860         154 LFTEIAKKL  162 (163)
T ss_pred             HHHHHHHHh
Confidence            999999875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01868 Rab11_like Rab11-like

Probab=99.97  E-value=1.5e-28  Score=169.21  Aligned_cols=156  Identities=19%  Similarity=0.353  Sum_probs=122.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce--EEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF--NIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      ..+||+++|++|||||||++++.+..+. ...++.+.  ....+..++  ..+++||+||++.+...+..+++.++++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            3579999999999999999999988775 44566654  333444444  578999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      |+|++++.++..+..|+..+.... ..+.|+++|+||+|+....  ..++......      ...++++++||++|.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~v~  154 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAE------KNGLSFIETSALDGTNVE  154 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHH------HcCCEEEEEECCCCCCHH
Confidence            999999999999998888765542 3368999999999986432  2222222211      145689999999999999


Q ss_pred             HHHHHHHHHH
Q 029920          168 EGFDWLVQDI  177 (185)
Q Consensus       168 ~l~~~l~~~~  177 (185)
                      ++++++.+.+
T Consensus       155 ~l~~~l~~~i  164 (165)
T cd01868         155 EAFKQLLTEI  164 (165)
T ss_pred             HHHHHHHHHh
Confidence            9999998765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.97  E-value=3.8e-29  Score=176.64  Aligned_cols=151  Identities=18%  Similarity=0.293  Sum_probs=121.6

Q ss_pred             EcCCCCChHHHHHHHhCCCCc-ccccCcceEEEEE--EE--cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCc
Q 029920           22 VGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKTV--TY--QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL   96 (185)
Q Consensus        22 ~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~~--~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   96 (185)
                      +|++|||||||+++++.+.+. .+.+|.+......  ..  ..+.+.+|||+|++.+..++..+++++|++++|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            599999999999999987775 5677877555433  33  347899999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHH
Q 029920           97 RRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQD  176 (185)
Q Consensus        97 ~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  176 (185)
                      .+|..+..|+..+.+..  ++.|+++|+||+|+.......+.. .     ++....+++++|||++|.|++++|++|++.
T Consensus        81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~-----~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~  152 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI-T-----FHRKKNLQYYDISAKSNYNFEKPFLWLARK  152 (200)
T ss_pred             HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH-H-----HHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999988888776643  479999999999985432211111 1     112256789999999999999999999998


Q ss_pred             Hhhh
Q 029920          177 IASR  180 (185)
Q Consensus       177 ~~~~  180 (185)
                      +.+.
T Consensus       153 i~~~  156 (200)
T smart00176      153 LIGD  156 (200)
T ss_pred             HHhc
Confidence            8664

Ran is involved in the active transport of proteins through nuclear pores.

>cd04140 ARHI_like ARHI subfamily

Probab=99.97  E-value=3.7e-29  Score=172.36  Aligned_cols=154  Identities=18%  Similarity=0.232  Sum_probs=117.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEE--cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTY--QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD   92 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   92 (185)
                      +||+++|++|+|||||++++.++.+. .+.++.+.... .+..  ....+.+|||||++.+..++..++..+|++++|||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence            78999999999999999999988874 44555553222 2222  34688999999999999888889999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhcc--ccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920           93 SSDLRRLDDCKMELDNLLKEE--RLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus        93 ~~~~~s~~~~~~~~~~~~~~~--~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      ++++++++.+..|+..+....  ..++.|+++|+||+|+.....  ..+.. .+.     .....+++++||++|.|+++
T Consensus        82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~-----~~~~~~~~e~SA~~g~~v~~  155 (165)
T cd04140          82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGA-ACA-----TEWNCAFMETSAKTNHNVQE  155 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHH-HHH-----HHhCCcEEEeecCCCCCHHH
Confidence            999999999888876554432  225789999999999865222  11111 111     11345799999999999999


Q ss_pred             HHHHHHHH
Q 029920          169 GFDWLVQD  176 (185)
Q Consensus       169 l~~~l~~~  176 (185)
                      +|++|++.
T Consensus       156 ~f~~l~~~  163 (165)
T cd04140         156 LFQELLNL  163 (165)
T ss_pred             HHHHHHhc
Confidence            99999764

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.97  E-value=1.8e-28  Score=168.55  Aligned_cols=156  Identities=22%  Similarity=0.381  Sum_probs=123.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      +||+++|++|||||||++++.+..+. ...++.+...  ..+..++  ..+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999988764 3445555433  3345544  67899999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (185)
                      |++++.+++.+..|+..+.... .+++|+++++||+|+....  ..+.......      ..+++++++||++|.|++++
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~-~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~e~Sa~~~~~i~~l  153 (164)
T smart00175       81 DITNRESFENLKNWLKELREYA-DPNVVIMLVGNKSDLEDQRQVSREEAEAFAE------EHGLPFFETSAKTNTNVEEA  153 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcccccCCCHHHHHHHHH------HcCCeEEEEeCCCCCCHHHH
Confidence            9999999999888877776653 2579999999999986532  2223322211      14567999999999999999


Q ss_pred             HHHHHHHHhh
Q 029920          170 FDWLVQDIAS  179 (185)
Q Consensus       170 ~~~l~~~~~~  179 (185)
                      ++++.+.+.+
T Consensus       154 ~~~i~~~~~~  163 (164)
T smart00175      154 FEELAREILK  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999998754

Rab GTPases are implicated in vesicle trafficking.

>PLN03118 Rab family protein; Provisional

Probab=99.97  E-value=8.8e-29  Score=176.93  Aligned_cols=162  Identities=20%  Similarity=0.352  Sum_probs=127.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ....+||+++|++|+|||||+++|.+..+..+.++.+...  ..+..++  ..+.+|||||++.+..++..+++.+|+++
T Consensus        11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v   90 (211)
T PLN03118         11 YDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII   90 (211)
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            4457899999999999999999999988877777777543  3344443  67899999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhc-cccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKE-ERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      +|||++++++|+.+...|...+.. ....+.|+++|+||+|+.....  .++......      ...++++++||+++.|
T Consensus        91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~------~~~~~~~e~SAk~~~~  164 (211)
T PLN03118         91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAK------EHGCLFLECSAKTREN  164 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH------HcCCEEEEEeCCCCCC
Confidence            999999999999988765554442 2234689999999999864322  222221111      1456799999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 029920          166 LLEGFDWLVQDIASR  180 (185)
Q Consensus       166 i~~l~~~l~~~~~~~  180 (185)
                      ++++|++|.+.+.+.
T Consensus       165 v~~l~~~l~~~~~~~  179 (211)
T PLN03118        165 VEQCFEELALKIMEV  179 (211)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999988654

>PLN03110 Rab GTPase; Provisional

Probab=99.97  E-value=1.9e-28  Score=175.68  Aligned_cols=162  Identities=20%  Similarity=0.313  Sum_probs=128.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE--EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN--IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      ....+||+++|++|||||||+++|.+..+. .+.+|.+..  ...+..++  +.+.+||+||++.+...+..+++.++++
T Consensus         9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~   88 (216)
T PLN03110          9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA   88 (216)
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence            446789999999999999999999988775 455666643  33445544  6899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH-HHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP-TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL  166 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (185)
                      ++|||++++.+|+.+..|+..+... ...+.|+++|+||+|+...... .+....+..     ...++++++||++|.|+
T Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~-----~~~~~~~e~SA~~g~~v  162 (216)
T PLN03110         89 LLVYDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQALAE-----KEGLSFLETSALEATNV  162 (216)
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCH
Confidence            9999999999999998888776554 3357999999999998543221 122222221     25678999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 029920          167 LEGFDWLVQDIASR  180 (185)
Q Consensus       167 ~~l~~~l~~~~~~~  180 (185)
                      +++|+++++.+.+.
T Consensus       163 ~~lf~~l~~~i~~~  176 (216)
T PLN03110        163 EKAFQTILLEIYHI  176 (216)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988653

>cd04118 Rab24 Rab24 subfamily

Probab=99.97  E-value=4.2e-29  Score=176.26  Aligned_cols=161  Identities=20%  Similarity=0.286  Sum_probs=121.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcc--cccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSV--ISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~--~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      +||+++|++|+|||||++++.++.+..  +.+|.+...  ..+..++  ..+.+||+||++.+...+..+++.+|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999888753  666766433  3455554  5677999999999888888899999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (185)
                      ||++++.+++....|+..+...  .++.|+++|+||+|+..... ...+.... ...+......+++++||++|.|++++
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~Sa~~~~gv~~l  157 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHD-VQDFADEIKAQHFETSSKTGQNVDEL  157 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHH-HHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            9999999999888877776543  24789999999999854321 11110000 00111113467899999999999999


Q ss_pred             HHHHHHHHhhh
Q 029920          170 FDWLVQDIASR  180 (185)
Q Consensus       170 ~~~l~~~~~~~  180 (185)
                      ++++.+.+.+.
T Consensus       158 ~~~i~~~~~~~  168 (193)
T cd04118         158 FQKVAEDFVSR  168 (193)
T ss_pred             HHHHHHHHHHh
Confidence            99999887553

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd01861 Rab6 Rab6 subfamily

Probab=99.97  E-value=1.9e-28  Score=168.03  Aligned_cols=154  Identities=22%  Similarity=0.334  Sum_probs=120.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      .||+++|++|||||||++++.+..+.. ..++.+  +....+..++  ..+++||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            489999999999999999999887753 344444  3344455544  57999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF  170 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (185)
                      |++++++|.....|+..+.... ..+.|+++++||+|+..... ..+....+..     ..+.+++++||+++.|+++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l~  154 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDER-GNDVIIVLVGNKTDLSDKRQVSTEEGEKKAK-----ELNAMFIETSAKAGHNVKELF  154 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEEChhccccCccCHHHHHHHHH-----HhCCEEEEEeCCCCCCHHHHH
Confidence            9999999999998888876543 23699999999999853321 2222222211     145789999999999999999


Q ss_pred             HHHHHH
Q 029920          171 DWLVQD  176 (185)
Q Consensus       171 ~~l~~~  176 (185)
                      +++.+.
T Consensus       155 ~~i~~~  160 (161)
T cd01861         155 RKIASA  160 (161)
T ss_pred             HHHHHh
Confidence            999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04113 Rab4 Rab4 subfamily

Probab=99.97  E-value=1.9e-28  Score=168.06  Aligned_cols=154  Identities=21%  Similarity=0.330  Sum_probs=120.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE--EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN--IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      +||+++|++|+|||||++++.+..+. ...++.+..  ...+..++  ..+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999988764 444555433  23344444  67899999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (185)
                      |+++++++..+..|+..+... ..++.|+++++||+|+....  ..++.......      .+++++++||+++.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~~~  153 (161)
T cd04113          81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQE------NGLLFLETSALTGENVEEA  153 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHHH------cCCEEEEEECCCCCCHHHH
Confidence            999999999998887766443 34679999999999986532  22222222211      3478999999999999999


Q ss_pred             HHHHHHHH
Q 029920          170 FDWLVQDI  177 (185)
Q Consensus       170 ~~~l~~~~  177 (185)
                      |+++++.+
T Consensus       154 ~~~~~~~~  161 (161)
T cd04113         154 FLKCARSI  161 (161)
T ss_pred             HHHHHHhC
Confidence            99998753

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=1.6e-28  Score=168.68  Aligned_cols=157  Identities=23%  Similarity=0.320  Sum_probs=123.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce-EEEEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF-NIKTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD   92 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~-~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   92 (185)
                      +||+++|++|+|||||++++.+..+. ...++... .......+  ...+.+||+||++.+...+..+++.+|++++|+|
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence            58999999999999999999987764 33343332 22223333  4689999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920           93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF  170 (185)
Q Consensus        93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (185)
                      ++++.++.....++..+.......++|+++|+||+|+...  ....+.......      .+.+++++||++|.|++++|
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~gi~~l~  154 (164)
T cd04139          81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQ------WGVPYVETSAKTRQNVEKAF  154 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHH------hCCeEEEeeCCCCCCHHHHH
Confidence            9999999999999998887655567999999999998652  222222222211      34689999999999999999


Q ss_pred             HHHHHHHhh
Q 029920          171 DWLVQDIAS  179 (185)
Q Consensus       171 ~~l~~~~~~  179 (185)
                      +++.+.+.+
T Consensus       155 ~~l~~~~~~  163 (164)
T cd04139         155 YDLVREIRQ  163 (164)
T ss_pred             HHHHHHHHh
Confidence            999987754

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.5e-29  Score=161.96  Aligned_cols=164  Identities=21%  Similarity=0.315  Sum_probs=133.2

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      ....+|++++|+.|+|||+|++++..+++. ..++|+++..  +.+.+++  +++++|||+|+++|++..+.|++++.+.
T Consensus         6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGA   85 (214)
T KOG0086|consen    6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA   85 (214)
T ss_pred             hhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence            345689999999999999999999999885 5667888554  4455543  7899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      ++|||++++++|..+..|+.+.... ..+++-+++++||.|+....+.....    ...++..+...+.++||++|.|++
T Consensus        86 lLVYD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~~~R~VtflE----As~FaqEnel~flETSa~TGeNVE  160 (214)
T KOG0086|consen   86 LLVYDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLE----ASRFAQENELMFLETSALTGENVE  160 (214)
T ss_pred             EEEEeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcChhhhhhHHH----HHhhhcccceeeeeecccccccHH
Confidence            9999999999999999999987544 56788999999999996653332211    112222267789999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 029920          168 EGFDWLVQDIASRI  181 (185)
Q Consensus       168 ~l~~~l~~~~~~~~  181 (185)
                      |.|-...+.+..++
T Consensus       161 EaFl~c~~tIl~kI  174 (214)
T KOG0086|consen  161 EAFLKCARTILNKI  174 (214)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99988888776554

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.96  E-value=1e-28  Score=174.89  Aligned_cols=161  Identities=17%  Similarity=0.231  Sum_probs=125.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcc-cccCcc-eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSV-ISPTLG-FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDS   93 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   93 (185)
                      ||+++|++|+|||||++++.+..+.. +.++.. .....+.+++  +.+++||+||+..+..++..++..+|++++|+|+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~   80 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV   80 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence            68999999999999999999887753 344443 3334455555  6889999999999988888899999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC---HHHHHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920           94 SDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT---PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF  170 (185)
Q Consensus        94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (185)
                      +++.+++....|+..+.......+.|+++|+||+|+.....   ........     ....+.+++++||++|.|++++|
T Consensus        81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~-----~~~~~~~~~~~Sa~~g~gv~~l~  155 (198)
T cd04147          81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTV-----ELDWNCGFVETSAKDNENVLEVF  155 (198)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHH-----HhhcCCcEEEecCCCCCCHHHHH
Confidence            99999999988888887765556799999999999865311   11111111     11134578999999999999999


Q ss_pred             HHHHHHHhhhccc
Q 029920          171 DWLVQDIASRIYL  183 (185)
Q Consensus       171 ~~l~~~~~~~~~~  183 (185)
                      +++.+.+....+.
T Consensus       156 ~~l~~~~~~~~~~  168 (198)
T cd04147         156 KELLRQANLPYNL  168 (198)
T ss_pred             HHHHHHhhccccc
Confidence            9999987654443

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.96  E-value=2.7e-28  Score=167.80  Aligned_cols=154  Identities=23%  Similarity=0.321  Sum_probs=118.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCC--CC-cccccCcceEE--EEEEE---cCeEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGE--DT-SVISPTLGFNI--KTVTY---QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~--~~-~~~~~t~~~~~--~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      +||+++|++|||||||++++.++  .+ ..+.++.+...  ..+..   ....+.+|||||++.+..++..+++.+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999864  33 35556665333  23333   3478999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHH-HHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTE-IAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      +|+|+++++++.....|+..+....  .+.|+++|+||+|+.+...... ....+.     ...+.+++++||+++.|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~  153 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA-----QANQLKFFKTSALRGVGYE  153 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH-----HHcCCeEEEEeCCCCCChH
Confidence            9999999999998888887765542  4689999999999865432211 111111     1134679999999999999


Q ss_pred             HHHHHHHHHH
Q 029920          168 EGFDWLVQDI  177 (185)
Q Consensus       168 ~l~~~l~~~~  177 (185)
                      ++++.+.+.+
T Consensus       154 ~l~~~l~~~~  163 (164)
T cd04101         154 EPFESLARAF  163 (164)
T ss_pred             HHHHHHHHHh
Confidence            9999998764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01862 Rab7 Rab7 subfamily

Probab=99.96  E-value=4.8e-28  Score=167.69  Aligned_cols=160  Identities=19%  Similarity=0.299  Sum_probs=122.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce--EEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF--NIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      +||+++|++|||||||++++.+..+. ...++.+.  ....+.+.+  ..+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999988764 33344443  233344444  56789999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccc---cCCCeEEEEeecCCCCC--CCCHHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920           92 DSSDLRRLDDCKMELDNLLKEER---LSGASLLILANKQDING--ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL  166 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (185)
                      |+++++++.....|...++....   ..++|+++|+||+|+..  ....++.......     ....+++++||++|.|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv  155 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQS-----NGNIPYFETSAKEAINV  155 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHH-----cCCceEEEEECCCCCCH
Confidence            99999999888777766655432   23789999999999973  2233333322221     12368999999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q 029920          167 LEGFDWLVQDIASRI  181 (185)
Q Consensus       167 ~~l~~~l~~~~~~~~  181 (185)
                      +++++++.+.+.+..
T Consensus       156 ~~l~~~i~~~~~~~~  170 (172)
T cd01862         156 EQAFETIARKALEQE  170 (172)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999887653

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.96  E-value=2.7e-28  Score=167.46  Aligned_cols=154  Identities=24%  Similarity=0.417  Sum_probs=124.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD   92 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   92 (185)
                      ||+++|++|||||||++++.++.+. .+.+|.+...  ..+..++  +.+.+||++|++.+......+++++|++++|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7999999999999999999988875 4566765443  3344444  679999999999999888899999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC--CCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920           93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING--ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF  170 (185)
Q Consensus        93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (185)
                      +++++||+.+..|+..+..... .+.|+++++||+|+.+  ....++......     . .+.+++++||+++.|+.++|
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~-----~-~~~~~~e~Sa~~~~~v~~~f  153 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAK-----E-LGVPYFEVSAKNGENVKEIF  153 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHH-----H-TTSEEEEEBTTTTTTHHHHH
T ss_pred             cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHH-----H-hCCEEEEEECCCCCCHHHHH
Confidence            9999999999988888766543 4689999999999875  333333332221     1 44789999999999999999


Q ss_pred             HHHHHHHh
Q 029920          171 DWLVQDIA  178 (185)
Q Consensus       171 ~~l~~~~~  178 (185)
                      ..+++.+.
T Consensus       154 ~~~i~~i~  161 (162)
T PF00071_consen  154 QELIRKIL  161 (162)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04142 RRP22 RRP22 subfamily

Probab=99.96  E-value=4.3e-28  Score=171.44  Aligned_cols=160  Identities=21%  Similarity=0.250  Sum_probs=118.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce--EEEEEEEcC--eEEEEEEcCCchhhH--------HHHHhhhcC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF--NIKTVTYQK--YTLNIWDVGGQRTIR--------SYWRNYFEQ   83 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~--------~~~~~~~~~   83 (185)
                      +||+|+|.+|+|||||++++.++.+. .+.|+.+.  ....+..++  +.+.+|||||...+.        .....+++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            58999999999999999999988875 35566542  223445555  678899999965321        113345789


Q ss_pred             CCEEEEEEeCCCcccHHHHHHHHHHHHhcc--ccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecc
Q 029920           84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEE--RLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSA  160 (185)
Q Consensus        84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (185)
                      +|++++|||++++++|+.+..|+..+....  ...++|+++|+||+|+..... ..+....+    ......++++++||
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~e~Sa  156 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVL----VRKSWKCGYLECSA  156 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHH----HHHhcCCcEEEecC
Confidence            999999999999999999988888777653  245799999999999954321 11111111    11114578999999


Q ss_pred             cCCCCHHHHHHHHHHHHhhh
Q 029920          161 YTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~~~  180 (185)
                      ++|.|++++|+.+++.+..+
T Consensus       157 k~g~~v~~lf~~i~~~~~~~  176 (198)
T cd04142         157 KYNWHILLLFKELLISATTR  176 (198)
T ss_pred             CCCCCHHHHHHHHHHHhhcc
Confidence            99999999999999877654

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>PLN03108 Rab family protein; Provisional

Probab=99.96  E-value=9e-28  Score=171.47  Aligned_cols=160  Identities=19%  Similarity=0.330  Sum_probs=125.8

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcceE--EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLGFN--IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ...+||+++|++|+|||||++++.+..+.. ..++.+..  ...+..++  +.+.+|||+|++.+..++..++..+|+++
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            457999999999999999999999887653 45565543  33344444  57889999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL  166 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (185)
                      +|+|+++++++..+..|+..+... ..++.|+++++||+|+...  ...++......      ..+++++++||+++.|+
T Consensus        84 lv~D~~~~~s~~~l~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~e~Sa~~~~~v  156 (210)
T PLN03108         84 LVYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK------EHGLIFMEASAKTAQNV  156 (210)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCccccCCCHHHHHHHHH------HcCCEEEEEeCCCCCCH
Confidence            999999999999988887776544 3357899999999998653  22333232221      14568999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 029920          167 LEGFDWLVQDIASR  180 (185)
Q Consensus       167 ~~l~~~l~~~~~~~  180 (185)
                      +++|+++++.+.++
T Consensus       157 ~e~f~~l~~~~~~~  170 (210)
T PLN03108        157 EEAFIKTAAKIYKK  170 (210)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887654

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.8e-29  Score=170.14  Aligned_cols=163  Identities=21%  Similarity=0.354  Sum_probs=133.2

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCccc-ccCcceEEEE--EEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTSVI-SPTLGFNIKT--VTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDG   86 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~-~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~   86 (185)
                      +.+..+||+++|++++|||-|+.++..+.+... -+|+++...+  +.+++  +..++|||+|++++++....|++++.+
T Consensus        10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG   89 (222)
T KOG0087|consen   10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG   89 (222)
T ss_pred             ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence            356679999999999999999999999999754 4677766554  44444  788999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      +++|||++...+|+++..|+.++..+ ..+++++++|+||+||..... +.+....++     ...+..|+++||.++.|
T Consensus        90 AllVYDITr~~Tfenv~rWL~ELRdh-ad~nivimLvGNK~DL~~lraV~te~~k~~A-----e~~~l~f~EtSAl~~tN  163 (222)
T KOG0087|consen   90 ALLVYDITRRQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLNHLRAVPTEDGKAFA-----EKEGLFFLETSALDATN  163 (222)
T ss_pred             eEEEEechhHHHHHHHHHHHHHHHhc-CCCCeEEEEeecchhhhhccccchhhhHhHH-----HhcCceEEEeccccccc
Confidence            99999999999999999999998776 456899999999999865211 122222222     22667899999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 029920          166 LLEGFDWLVQDIASR  180 (185)
Q Consensus       166 i~~l~~~l~~~~~~~  180 (185)
                      +++.|+.++..+.+.
T Consensus       164 Ve~aF~~~l~~I~~~  178 (222)
T KOG0087|consen  164 VEKAFERVLTEIYKI  178 (222)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999988877654

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.96  E-value=1.4e-28  Score=170.72  Aligned_cols=159  Identities=18%  Similarity=0.253  Sum_probs=116.0

Q ss_pred             EEEEcCCCCChHHHHHHHhCCCCcc-cccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCC
Q 029920           19 ILMVGLDNSGKTTIVLKINGEDTSV-ISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSS   94 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   94 (185)
                      |+|+|++|||||||++++.++.+.. +.++..... ..+..++  +.+.+|||||++.+..++..+++.+|++++|||++
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~   80 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD   80 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence            5899999999999999999988753 444444222 2233433  57999999999999888888999999999999999


Q ss_pred             CcccHHHHHH-HHHHHHhccccCCCeEEEEeecCCCCCCCCHH-HHH--------HhcCcccccCccceEEEeecccCCC
Q 029920           95 DLRRLDDCKM-ELDNLLKEERLSGASLLILANKQDINGALTPT-EIA--------KVLNLEAMDKTRHWKIVGCSAYTGE  164 (185)
Q Consensus        95 ~~~s~~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (185)
                      ++++|+.+.. |+..+...  .++.|+++|+||+|+....... ++.        ..............+++++||++|.
T Consensus        81 ~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       81 SPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999865 55555443  3579999999999986532111 110        0000111112122479999999999


Q ss_pred             CHHHHHHHHHHHHhh
Q 029920          165 GLLEGFDWLVQDIAS  179 (185)
Q Consensus       165 ~i~~l~~~l~~~~~~  179 (185)
                      |++++|+.+.+.+.+
T Consensus       159 ~v~~lf~~l~~~~~~  173 (174)
T smart00174      159 GVREVFEEAIRAALN  173 (174)
T ss_pred             CHHHHHHHHHHHhcC
Confidence            999999999987643

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01893 Miro1 Miro1 subfamily

Probab=99.96  E-value=3.2e-28  Score=167.86  Aligned_cols=161  Identities=17%  Similarity=0.229  Sum_probs=115.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcccccCc-ceEEEE--EEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVISPTL-GFNIKT--VTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDS   93 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~-~~~~~~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   93 (185)
                      +||+++|++|+|||||++++.++.++...++. ......  +...+..+.+|||||.+.+...+..++..+|++++|||+
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence            48999999999999999999998885433322 211111  222457899999999988877777888999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccc-eEEEeecccCCCCHHHHHHH
Q 029920           94 SDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRH-WKIVGCSAYTGEGLLEGFDW  172 (185)
Q Consensus        94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~  172 (185)
                      +++.+++.+..+|...+... ..+.|+++|+||+|+.+............. ....... .+++++||++|.|++++|+.
T Consensus        81 ~~~~s~~~~~~~~~~~i~~~-~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~Sa~~~~~v~~lf~~  158 (166)
T cd01893          81 DRPSTLERIRTKWLPLIRRL-GVKVPIILVGNKSDLRDGSSQAGLEEEMLP-IMNEFREIETCVECSAKTLINVSEVFYY  158 (166)
T ss_pred             CCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEchhcccccchhHHHHHHHH-HHHHHhcccEEEEeccccccCHHHHHHH
Confidence            99999999865554444432 247999999999999765432111111100 0000011 37999999999999999999


Q ss_pred             HHHHHhh
Q 029920          173 LVQDIAS  179 (185)
Q Consensus       173 l~~~~~~  179 (185)
                      +.+.+.+
T Consensus       159 ~~~~~~~  165 (166)
T cd01893         159 AQKAVLH  165 (166)
T ss_pred             HHHHhcC
Confidence            9887654

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=6.8e-29  Score=160.44  Aligned_cols=161  Identities=19%  Similarity=0.362  Sum_probs=129.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEE--E-EE-cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKT--V-TY-QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~--~-~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      ..+|+.++|+..+|||+++.+.++..+. ....|.|+..+.  + +. ..+.+++|||+|++.++.+...++++++++|+
T Consensus        20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL   99 (193)
T KOG0093|consen   20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   99 (193)
T ss_pred             ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence            4579999999999999999999998885 556777754443  2 11 23789999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH-HHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP-TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      |||+++.+||..+..|...+..+ ...+.|+|+++||||+.++... .+.-..+..     ..+..||++||+.+.|+++
T Consensus       100 myDitNeeSf~svqdw~tqIkty-sw~naqvilvgnKCDmd~eRvis~e~g~~l~~-----~LGfefFEtSaK~NinVk~  173 (193)
T KOG0093|consen  100 MYDITNEESFNSVQDWITQIKTY-SWDNAQVILVGNKCDMDSERVISHERGRQLAD-----QLGFEFFETSAKENINVKQ  173 (193)
T ss_pred             EEecCCHHHHHHHHHHHHHheee-eccCceEEEEecccCCccceeeeHHHHHHHHH-----HhChHHhhhcccccccHHH
Confidence            99999999999999988887666 5678999999999999665322 111111111     1556799999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 029920          169 GFDWLVQDIASRI  181 (185)
Q Consensus       169 l~~~l~~~~~~~~  181 (185)
                      +|+.+++.+-+++
T Consensus       174 ~Fe~lv~~Ic~km  186 (193)
T KOG0093|consen  174 VFERLVDIICDKM  186 (193)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999876543

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=3.9e-29  Score=164.28  Aligned_cols=164  Identities=20%  Similarity=0.361  Sum_probs=130.5

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCcccc-cCcceEEE--EEEEc---CeEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSVIS-PTLGFNIK--TVTYQ---KYTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~-~t~~~~~~--~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ..++++|+|++-+|||+|++.+..++++..+ ||.++...  .++..   .+++++|||+|++.|+++...|++++-+++
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl   86 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL   86 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence            4689999999999999999999999997655 67764322  23332   278999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccccCC-CeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERLSG-ASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      +|||+++++||+....|+.+.......|. +-+.+|++|+|+.+....   ....++ .++..+++.|+++||++|.|++
T Consensus        87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqV---t~EEaE-klAa~hgM~FVETSak~g~NVe  162 (213)
T KOG0091|consen   87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQV---TAEEAE-KLAASHGMAFVETSAKNGCNVE  162 (213)
T ss_pred             EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccc---cHHHHH-HHHHhcCceEEEecccCCCcHH
Confidence            99999999999999999988776655444 456799999999754222   222222 2222388999999999999999


Q ss_pred             HHHHHHHHHHhhhcc
Q 029920          168 EGFDWLVQDIASRIY  182 (185)
Q Consensus       168 ~l~~~l~~~~~~~~~  182 (185)
                      +.|..+.+.+...+.
T Consensus       163 EAF~mlaqeIf~~i~  177 (213)
T KOG0091|consen  163 EAFDMLAQEIFQAIQ  177 (213)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999988766543

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=1.9e-29  Score=163.13  Aligned_cols=160  Identities=23%  Similarity=0.386  Sum_probs=130.4

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      -.+.++.+++|++|+|||+|+-++....++ .+..|++  +..+++.+++  +++++|||+|++.|+.+...|+++.+++
T Consensus         5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv   84 (198)
T KOG0079|consen    5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV   84 (198)
T ss_pred             HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence            345678899999999999999999999886 4555666  5555666644  8999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL  166 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (185)
                      ++|||+++.+||.++..|++++-.  .++..|-++|+||+|.++... ..+....++     ...++.+|++||+.+.|+
T Consensus        85 ~vVYDVTn~ESF~Nv~rWLeei~~--ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A-----~~mgie~FETSaKe~~Nv  157 (198)
T KOG0079|consen   85 IVVYDVTNGESFNNVKRWLEEIRN--NCDSVPKVLVGNKNDDPERRVVDTEDARAFA-----LQMGIELFETSAKENENV  157 (198)
T ss_pred             EEEEECcchhhhHhHHHHHHHHHh--cCccccceecccCCCCccceeeehHHHHHHH-----HhcCchheehhhhhcccc
Confidence            999999999999999999999865  445889999999999865422 122222222     225677899999999999


Q ss_pred             HHHHHHHHHHHhh
Q 029920          167 LEGFDWLVQDIAS  179 (185)
Q Consensus       167 ~~l~~~l~~~~~~  179 (185)
                      +..|.-|.+.+.+
T Consensus       158 E~mF~cit~qvl~  170 (198)
T KOG0079|consen  158 EAMFHCITKQVLQ  170 (198)
T ss_pred             hHHHHHHHHHHHH
Confidence            9999998887654

>cd04177 RSR1 RSR1 subgroup

Probab=99.96  E-value=1.4e-28  Score=169.94  Aligned_cols=156  Identities=18%  Similarity=0.246  Sum_probs=121.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD   92 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   92 (185)
                      +||+++|++|||||||++++.++.+. .+.++.+.. ...+..++  ..+.+|||||++.+..++..+++.++++++|+|
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~   81 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYS   81 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEE
Confidence            68999999999999999999988774 445555422 23344443  688999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920           93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF  170 (185)
Q Consensus        93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (185)
                      ++++++++....|...+.......+.|+++++||.|+.....  ..+... +.    ......+++++||+++.|++++|
T Consensus        82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~-~~----~~~~~~~~~~~SA~~~~~i~~~f  156 (168)
T cd04177          82 VTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVS-LS----QQWGNVPFYETSARKRTNVDEVF  156 (168)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHH-HH----HHcCCceEEEeeCCCCCCHHHHH
Confidence            999999999988877776644456799999999999854322  122111 11    11123689999999999999999


Q ss_pred             HHHHHHH
Q 029920          171 DWLVQDI  177 (185)
Q Consensus       171 ~~l~~~~  177 (185)
                      +++++.+
T Consensus       157 ~~i~~~~  163 (168)
T cd04177         157 IDLVRQI  163 (168)
T ss_pred             HHHHHHH
Confidence            9998765

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01892 Miro2 Miro2 subfamily

Probab=99.96  E-value=1e-27  Score=165.83  Aligned_cols=153  Identities=22%  Similarity=0.238  Sum_probs=119.8

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCc--ccccCcceE--EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTS--VISPTLGFN--IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~--~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      ++.+||+++|++|||||||++++.++.+.  .+.+|.+..  ...+..++  ..+.+||++|++.+...+..+++.+|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            46799999999999999999999998874  556776633  34455555  6789999999999888888889999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-----HHHHHHhcCcccccCccce-EEEeeccc
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-----PTEIAKVLNLEAMDKTRHW-KIVGCSAY  161 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~Sa~  161 (185)
                      ++|+|++++.+++.+..|+..+..   ..++|+++|+||+|+.+...     ..++...         .+. .++++||+
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~---------~~~~~~~~~Sa~  149 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRK---------LGLPPPLHFSSK  149 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHH---------cCCCCCEEEEec
Confidence            999999999999988777765422   23699999999999854321     1122211         122 35899999


Q ss_pred             CCCCHHHHHHHHHHHHh
Q 029920          162 TGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       162 ~~~~i~~l~~~l~~~~~  178 (185)
                      +|.|++++|+.+.+.+.
T Consensus       150 ~~~~v~~lf~~l~~~~~  166 (169)
T cd01892         150 LGDSSNELFTKLATAAQ  166 (169)
T ss_pred             cCccHHHHHHHHHHHhh
Confidence            99999999999998765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04135 Tc10 TC10 subfamily

Probab=99.96  E-value=1.9e-28  Score=170.18  Aligned_cols=160  Identities=21%  Similarity=0.246  Sum_probs=116.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD   92 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   92 (185)
                      +||+++|++|+|||||++++.++.+. .+.++.... ...+..++  +.+.+|||||++.+...+..+++.+|++++|+|
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~   80 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS   80 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence            58999999999999999999988775 345554422 22344444  567899999999988888889999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhc---------CcccccCccceEEEeecccCC
Q 029920           93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVL---------NLEAMDKTRHWKIVGCSAYTG  163 (185)
Q Consensus        93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~Sa~~~  163 (185)
                      ++++++|+.....|...+... .++.|+++++||+|+.+...........         ...........+++++||++|
T Consensus        81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  159 (174)
T cd04135          81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ  159 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence            999999998875444444432 4679999999999986542221111101         111111112247999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 029920          164 EGLLEGFDWLVQDI  177 (185)
Q Consensus       164 ~~i~~l~~~l~~~~  177 (185)
                      .|++++|+.+++.+
T Consensus       160 ~gi~~~f~~~~~~~  173 (174)
T cd04135         160 KGLKTVFDEAILAI  173 (174)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998765

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04148 RGK RGK subfamily

Probab=99.96  E-value=4.5e-28  Score=174.17  Aligned_cols=155  Identities=17%  Similarity=0.195  Sum_probs=116.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc--ccccCcc--eEEEEEEE--cCeEEEEEEcCCchhhHHHHHhhhc-CCCEEEE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS--VISPTLG--FNIKTVTY--QKYTLNIWDVGGQRTIRSYWRNYFE-QTDGLVW   89 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~--~~~~t~~--~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~-~~d~~i~   89 (185)
                      +||+++|++|+|||||++++.++.+.  .+.++.+  +....+.+  ....+.+|||||++  ......++. .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            58999999999999999999877663  4445553  34444555  34789999999998  233344566 8999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHH-HHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPT-EIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      |||++++.+|+.+..|+..+.......+.|+++|+||+|+.+..... +....+.     ...+++++++||+++.|+++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a-----~~~~~~~~e~SA~~~~gv~~  153 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACA-----VVFDCKFIETSAGLQHNVDE  153 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHH-----HHcCCeEEEecCCCCCCHHH
Confidence            99999999999998888877665444579999999999986542211 1111111     11356799999999999999


Q ss_pred             HHHHHHHHHh
Q 029920          169 GFDWLVQDIA  178 (185)
Q Consensus       169 l~~~l~~~~~  178 (185)
                      +|+++++.+.
T Consensus       154 l~~~l~~~~~  163 (221)
T cd04148         154 LLEGIVRQIR  163 (221)
T ss_pred             HHHHHHHHHH
Confidence            9999999885

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd00154 Rab Rab family

Probab=99.96  E-value=2e-27  Score=161.95  Aligned_cols=151  Identities=23%  Similarity=0.384  Sum_probs=121.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCccc-ccCcceEEEEE--EE--cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVI-SPTLGFNIKTV--TY--QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~-~~t~~~~~~~~--~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      +||+++|++|+|||||++++.+..+... .++.+......  ..  ....+.+||+||++.+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999888654 56666544433  33  3478999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC--CCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN--GALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (185)
                      |+++++++.....|+..+.... ..+.|+++++||+|+.  .....++.......      ...+++++||+++.|++++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~sa~~~~~i~~~  153 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAKE------NGLLFFETSAKTGENVEEL  153 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHHH------cCCeEEEEecCCCCCHHHH
Confidence            9999989998888777776653 2469999999999995  33333343332221      4678999999999999999


Q ss_pred             HHHHH
Q 029920          170 FDWLV  174 (185)
Q Consensus       170 ~~~l~  174 (185)
                      +++|.
T Consensus       154 ~~~i~  158 (159)
T cd00154         154 FQSLA  158 (159)
T ss_pred             HHHHh
Confidence            99886

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.96  E-value=3.4e-28  Score=168.81  Aligned_cols=157  Identities=17%  Similarity=0.227  Sum_probs=112.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc-eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG-FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD   92 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   92 (185)
                      +|++++|++|+|||||++++.+..+. .+.+|.. .....+..++  ..+.+|||||++.+...+..+++.+|++++|||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d   80 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS   80 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence            58999999999999999999877664 3444442 2122334443  688999999999998888889999999999999


Q ss_pred             CCCcccHHHHHH-HHHHHHhccccCCCeEEEEeecCCCCCCCCH---------HHHHHhcCcccccCccceEEEeecccC
Q 029920           93 SSDLRRLDDCKM-ELDNLLKEERLSGASLLILANKQDINGALTP---------TEIAKVLNLEAMDKTRHWKIVGCSAYT  162 (185)
Q Consensus        93 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (185)
                      ++++++|+.... |+..+...  .++.|+++++||+|+......         +.+...............+++++||++
T Consensus        81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999998864 55454432  246899999999998643210         000000011111111234899999999


Q ss_pred             CCCHHHHHHHHHH
Q 029920          163 GEGLLEGFDWLVQ  175 (185)
Q Consensus       163 ~~~i~~l~~~l~~  175 (185)
                      |.|++++|+.+.-
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999988753

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04123 Rab21 Rab21 subfamily

Probab=99.96  E-value=4.5e-27  Score=161.09  Aligned_cols=154  Identities=27%  Similarity=0.357  Sum_probs=118.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      +||+++|++|+|||||++++.+..+.. ..++..  .....+...+  ..+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            589999999999999999999887753 233332  2233344333  57999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (185)
                      |+++++++.....|+..+..... .+.|+++++||+|+....  ..++.......      .+.+++++|++++.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~s~~~~~gi~~~  153 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAKS------VGAKHFETSAKTGKGIEEL  153 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHHH------cCCEEEEEeCCCCCCHHHH
Confidence            99999999988888777765533 378999999999986432  22223222211      3567899999999999999


Q ss_pred             HHHHHHHH
Q 029920          170 FDWLVQDI  177 (185)
Q Consensus       170 ~~~l~~~~  177 (185)
                      ++++.+.+
T Consensus       154 ~~~l~~~~  161 (162)
T cd04123         154 FLSLAKRM  161 (162)
T ss_pred             HHHHHHHh
Confidence            99998865

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.96  E-value=3.5e-28  Score=171.36  Aligned_cols=156  Identities=17%  Similarity=0.194  Sum_probs=110.2

Q ss_pred             eeEEEEEcCCCCChHHHHH-HHhCCCC------cccccCcce-E-EE-----------EEEEcCeEEEEEEcCCchhhHH
Q 029920           16 EMRILMVGLDNSGKTTIVL-KINGEDT------SVISPTLGF-N-IK-----------TVTYQKYTLNIWDVGGQRTIRS   75 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~-~l~~~~~------~~~~~t~~~-~-~~-----------~~~~~~~~~~~~D~~g~~~~~~   75 (185)
                      .+||+++|+.|+|||||+. ++.++.+      ..+.||.+. . ..           .+....+.+.+|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999996 5655433      244566631 1 11           1122347899999999975  3


Q ss_pred             HHHhhhcCCCEEEEEEeCCCcccHHHHHH-HHHHHHhccccCCCeEEEEeecCCCCCCCC----------------HHHH
Q 029920           76 YWRNYFEQTDGLVWVVDSSDLRRLDDCKM-ELDNLLKEERLSGASLLILANKQDINGALT----------------PTEI  138 (185)
Q Consensus        76 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~----------------~~~~  138 (185)
                      ....+++++|++++|||++++.||+.+.. |+..+...  .++.|+++|+||+|+.+...                ...+
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V  157 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF--CPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL  157 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence            45567899999999999999999999974 66655443  24789999999999854210                0111


Q ss_pred             HHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHH
Q 029920          139 AKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQD  176 (185)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  176 (185)
                      ....+. .++...+++|++|||++|.|++++|+.+++.
T Consensus       158 ~~~e~~-~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         158 PPETGR-AVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             CHHHHH-HHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            111111 1222356789999999999999999998864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04114 Rab30 Rab30 subfamily

Probab=99.96  E-value=5.4e-27  Score=162.06  Aligned_cols=158  Identities=21%  Similarity=0.261  Sum_probs=120.8

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ...++|+++|++|||||||++++.+..+. ...++.+  +....+.+.+  ..+.+||+||++.+...+..++..+|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            45699999999999999999999876654 3445554  3334455555  56889999999999998899999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      +|+|++++.+++.+..|+..+... ...+.|+++++||+|+.+... ..+....+..     ....+++++||++|.|++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~  158 (169)
T cd04114          85 LTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFSD-----AQDMYYLETSAKESDNVE  158 (169)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHH-----HcCCeEEEeeCCCCCCHH
Confidence            999999999998887776655433 334689999999999864322 1222222221     134679999999999999


Q ss_pred             HHHHHHHHHH
Q 029920          168 EGFDWLVQDI  177 (185)
Q Consensus       168 ~l~~~l~~~~  177 (185)
                      ++|+++.+.+
T Consensus       159 ~l~~~i~~~~  168 (169)
T cd04114         159 KLFLDLACRL  168 (169)
T ss_pred             HHHHHHHHHh
Confidence            9999998764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.96  E-value=9.7e-28  Score=165.26  Aligned_cols=155  Identities=20%  Similarity=0.248  Sum_probs=113.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc-eEEEEEEEcC--eEEEEEEcCCchh-hHHHHHhhhcCCCEEEEEEe
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTS-VISPTLG-FNIKTVTYQK--YTLNIWDVGGQRT-IRSYWRNYFEQTDGLVWVVD   92 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~~~~d~~i~v~d   92 (185)
                      ||+++|++|+|||||++++....+. .+.++.. .....+..++  +.+++||+||++. .......+++.+|++++|+|
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d   80 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS   80 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence            5899999999999999999887664 3444443 2223334443  5789999999885 34456678899999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhccc-cCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCC-CHHH
Q 029920           93 SSDLRRLDDCKMELDNLLKEER-LSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE-GLLE  168 (185)
Q Consensus        93 ~~~~~s~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~  168 (185)
                      ++++++|+.+..|+..+..... ..+.|+++|+||+|+....  ..++... +.     ...+.+++++||++|. |+++
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~-----~~~~~~~~e~Sa~~~~~~v~~  154 (165)
T cd04146          81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEK-LA-----SELGCLFFEVSAAEDYDGVHS  154 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHH-HH-----HHcCCEEEEeCCCCCchhHHH
Confidence            9999999998887766655432 4579999999999985432  2222211 11     1134689999999995 9999


Q ss_pred             HHHHHHHHHh
Q 029920          169 GFDWLVQDIA  178 (185)
Q Consensus       169 l~~~l~~~~~  178 (185)
                      +|+.+++.+.
T Consensus       155 ~f~~l~~~~~  164 (165)
T cd04146         155 VFHELCREVR  164 (165)
T ss_pred             HHHHHHHHHh
Confidence            9999998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.96  E-value=4.4e-27  Score=164.17  Aligned_cols=158  Identities=20%  Similarity=0.287  Sum_probs=124.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcce-EEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLGF-NIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD   92 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   92 (185)
                      .||+++|++|+|||||++++.+..+.. ..++... ....+..++  +.+.+||+||++++...+..++..++++++|+|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS   81 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence            689999999999999999999887643 4444432 233344443  567999999999999889999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920           93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF  170 (185)
Q Consensus        93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (185)
                      +++..+++.+..++..++......+.|+++++||+|+....  ...+..... .     ....+++++||+++.|+++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~-~-----~~~~~~~~~Sa~~~~gv~~l~  155 (180)
T cd04137          82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELA-E-----SWGAAFLESSARENENVEEAF  155 (180)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHH-H-----HcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999988886555678999999999986432  221221111 1     134689999999999999999


Q ss_pred             HHHHHHHhhh
Q 029920          171 DWLVQDIASR  180 (185)
Q Consensus       171 ~~l~~~~~~~  180 (185)
                      +++.+.+...
T Consensus       156 ~~l~~~~~~~  165 (180)
T cd04137         156 ELLIEEIEKV  165 (180)
T ss_pred             HHHHHHHHHh
Confidence            9999987654

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd00157 Rho Rho (Ras homology) family

Probab=99.95  E-value=6.1e-28  Score=166.99  Aligned_cols=158  Identities=19%  Similarity=0.273  Sum_probs=113.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEE--cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTY--QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD   92 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   92 (185)
                      +||+++|++|||||||+++|.+..+. ...++..... .....  ....+.+||+||++.+......+++.+|++++|||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS   80 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence            58999999999999999999988873 3334333211 22222  34679999999999887777788899999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHH--------HHhcCcccccCccceEEEeecccCCC
Q 029920           93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEI--------AKVLNLEAMDKTRHWKIVGCSAYTGE  164 (185)
Q Consensus        93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (185)
                      +++++++......+...+.. ...+.|+++|+||+|+.+.......        ...............+++++||++|.
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  159 (171)
T cd00157          81 VDSPSSFENVKTKWIPEIRH-YCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE  159 (171)
T ss_pred             CCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence            99999998877655544443 2237999999999998765433110        01111111112133489999999999


Q ss_pred             CHHHHHHHHHH
Q 029920          165 GLLEGFDWLVQ  175 (185)
Q Consensus       165 ~i~~l~~~l~~  175 (185)
                      |++++++++.+
T Consensus       160 gi~~l~~~i~~  170 (171)
T cd00157         160 GVKEVFEEAIR  170 (171)
T ss_pred             CHHHHHHHHhh
Confidence            99999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd00876 Ras Ras family

Probab=99.95  E-value=5.8e-27  Score=160.22  Aligned_cols=154  Identities=22%  Similarity=0.332  Sum_probs=120.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc-eEEEEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTS-VISPTLG-FNIKTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDS   93 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~-~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   93 (185)
                      ||+++|++|||||||++++.+..+. ...++.. .....+..+  .+.+.+||+||+..+...+..+++.+|++++|+|.
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   80 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI   80 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence            6899999999999999999877653 3344444 222334444  46889999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHH
Q 029920           94 SDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFD  171 (185)
Q Consensus        94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (185)
                      ++++++.....++..+.......+.|+++++||+|+....  ..++.......      ...+++++||+++.|++++++
T Consensus        81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~S~~~~~~i~~l~~  154 (160)
T cd00876          81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKE------WGCPFIETSAKDNINIDEVFK  154 (160)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHH------cCCcEEEeccCCCCCHHHHHH
Confidence            9999999999988888776544679999999999986521  22222222211      336899999999999999999


Q ss_pred             HHHHHH
Q 029920          172 WLVQDI  177 (185)
Q Consensus       172 ~l~~~~  177 (185)
                      +|.+.+
T Consensus       155 ~l~~~i  160 (160)
T cd00876         155 LLVREI  160 (160)
T ss_pred             HHHhhC
Confidence            998753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.95  E-value=4.4e-27  Score=163.40  Aligned_cols=160  Identities=19%  Similarity=0.307  Sum_probs=115.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD   92 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   92 (185)
                      .||+++|++|||||||++++.++.+. .+.++.+.. ...+..++  ..+.+|||||++.+...+..++..+|++++|+|
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~   81 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   81 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence            58999999999999999999988775 455665533 23344443  578999999999888887788899999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhc---------CcccccCccceEEEeecccCC
Q 029920           93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVL---------NLEAMDKTRHWKIVGCSAYTG  163 (185)
Q Consensus        93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~Sa~~~  163 (185)
                      ++++++|+.+...|...+.. ...+.|+++|+||+|+.......+.....         ...........++++|||++|
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (175)
T cd01870          82 IDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTK  160 (175)
T ss_pred             CCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccC
Confidence            99999998886543333332 23478999999999986532221111000         000111112347999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 029920          164 EGLLEGFDWLVQDI  177 (185)
Q Consensus       164 ~~i~~l~~~l~~~~  177 (185)
                      .|++++|+++.+.+
T Consensus       161 ~~v~~lf~~l~~~~  174 (175)
T cd01870         161 EGVREVFEMATRAA  174 (175)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998654

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1e-27  Score=159.06  Aligned_cols=177  Identities=36%  Similarity=0.686  Sum_probs=157.6

Q ss_pred             HHHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCC--------cccccCcceEEEEEEEcCeEEEEEEcCCchhhHH
Q 029920            4 LSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDT--------SVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRS   75 (185)
Q Consensus         4 ~~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~--------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~   75 (185)
                      .+.+.+....+..+.|+++|..++||||++.++.....        +...+|.+.....+..++..+.+||..|++..++
T Consensus         5 ~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrS   84 (197)
T KOG0076|consen    5 MSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRS   84 (197)
T ss_pred             HHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHH
Confidence            36667777788999999999999999999988743222        4566888999999999999999999999999999


Q ss_pred             HHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEE
Q 029920           76 YWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKI  155 (185)
Q Consensus        76 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (185)
                      +|..|+..+|++|+++|+++++.|+.....++.+.......+.|+++.+||.|+.+..+..++...++........+.++
T Consensus        85 lw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~  164 (197)
T KOG0076|consen   85 LWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPF  164 (197)
T ss_pred             HHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCcc
Confidence            99999999999999999999999999999999999887788999999999999999988889988888645555578899


Q ss_pred             EeecccCCCCHHHHHHHHHHHHhhh
Q 029920          156 VGCSAYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       156 ~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (185)
                      .++||.+|.|+++-..|++..+.++
T Consensus       165 ~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  165 QPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             ccchhhhcccHHHHHHHHHHHHhhc
Confidence            9999999999999999999998766

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.95  E-value=2e-26  Score=165.22  Aligned_cols=163  Identities=17%  Similarity=0.314  Sum_probs=128.4

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHhCCCC-cccccCcceEEEEEEE----cCeEEEEEEcCCchhhHHHHHhhhcCCC
Q 029920           11 KKKEKEMRILMVGLDNSGKTTIVLKINGEDT-SVISPTLGFNIKTVTY----QKYTLNIWDVGGQRTIRSYWRNYFEQTD   85 (185)
Q Consensus        11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~~~-~~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d   85 (185)
                      ......+||+++|++|||||||++++..+.+ ..+.+|.+.......+    +.+.+.+|||+|++.+...+..++..++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            4466779999999999999999987766555 4677788766555433    3478999999999999888889999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           86 GLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      ++++|+|++++.++..+..|+..+....  .+.|+++++||+|+.+.....+.....      ...++.++++||++|.|
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~~------~~~~~~~~e~Sa~~~~~  155 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITFH------RKKNLQYYDISAKSNYN  155 (215)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHHH------HHcCCEEEEEeCCCCCC
Confidence            9999999999999999988888776542  478999999999986432222222111      11456799999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 029920          166 LLEGFDWLVQDIASRI  181 (185)
Q Consensus       166 i~~l~~~l~~~~~~~~  181 (185)
                      +++.|.+|++.+.++-
T Consensus       156 v~~~f~~ia~~l~~~p  171 (215)
T PTZ00132        156 FEKPFLWLARRLTNDP  171 (215)
T ss_pred             HHHHHHHHHHHHhhcc
Confidence            9999999999887643

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.4e-27  Score=153.85  Aligned_cols=178  Identities=46%  Similarity=0.835  Sum_probs=163.0

Q ss_pred             ChHHHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhh
Q 029920            2 GLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYF   81 (185)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~   81 (185)
                      |..+.|+....++...++.++|.-|+||||+..++.-...-..-||+++....+.+.+.++++||..|+.+++..|+.|+
T Consensus         4 g~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy   83 (182)
T KOG0072|consen    4 GFSSLFKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYY   83 (182)
T ss_pred             hHHHHHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHh
Confidence            34588899998889999999999999999999999888888888999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeeccc
Q 029920           82 EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAY  161 (185)
Q Consensus        82 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (185)
                      .+.|++|||+|.+|..........+..++.+....+..++|++||.|........+....++.+.+.. ..+.+|++||.
T Consensus        84 ~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~-r~~~Iv~tSA~  162 (182)
T KOG0072|consen   84 ADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKD-RIWQIVKTSAV  162 (182)
T ss_pred             cccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhh-heeEEEeeccc
Confidence            99999999999999888888888888888887777888999999999988888889988888888777 67999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh
Q 029920          162 TGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~~  180 (185)
                      +|.|+++..+|+.+.++++
T Consensus       163 kg~Gld~~~DWL~~~l~~~  181 (182)
T KOG0072|consen  163 KGEGLDPAMDWLQRPLKSR  181 (182)
T ss_pred             cccCCcHHHHHHHHHHhcc
Confidence            9999999999999988764

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.95  E-value=6.3e-26  Score=156.56  Aligned_cols=153  Identities=15%  Similarity=0.170  Sum_probs=106.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCccc---ccCcceEEEEEEEcCeEEEEEEcCCchhhH---------HHHHhhhcCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVI---SPTLGFNIKTVTYQKYTLNIWDVGGQRTIR---------SYWRNYFEQT   84 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~~~~   84 (185)
                      ++|+++|++|+|||||+++|.+..+...   ..|..........++..+++|||||+....         .........+
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR   80 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence            4799999999999999999999876421   224444555555667899999999973210         1111112336


Q ss_pred             CEEEEEEeCCCcccH--HHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccC
Q 029920           85 DGLVWVVDSSDLRRL--DDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYT  162 (185)
Q Consensus        85 d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (185)
                      |++++|+|+++..++  +....++..+....  .+.|+++|+||+|+.......+...      ......++++++||++
T Consensus        81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~------~~~~~~~~~~~~Sa~~  152 (168)
T cd01897          81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSEIEE------EEELEGEEVLKISTLT  152 (168)
T ss_pred             CcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHHHHH------hhhhccCceEEEEecc
Confidence            899999999986553  55455555543322  3789999999999965433322111      1122467899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 029920          163 GEGLLEGFDWLVQDI  177 (185)
Q Consensus       163 ~~~i~~l~~~l~~~~  177 (185)
                      |.|++++++++.+.+
T Consensus       153 ~~gi~~l~~~l~~~~  167 (168)
T cd01897         153 EEGVDEVKNKACELL  167 (168)
T ss_pred             cCCHHHHHHHHHHHh
Confidence            999999999998865

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04129 Rho2 Rho2 subfamily

Probab=99.95  E-value=1.7e-26  Score=162.22  Aligned_cols=164  Identities=16%  Similarity=0.236  Sum_probs=114.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD   92 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   92 (185)
                      .||+++|++|+|||||++++....+. ...++.... ...+..++  ..+.+||++|++.+......++..+|++++|+|
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~   81 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA   81 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence            58999999999999999999866554 344444322 22334443  568999999998877666677889999999999


Q ss_pred             CCCcccHHHHHH-HHHHHHhccccCCCeEEEEeecCCCCCCCCHH-H------HHHhcCcccccCccceEEEeecccCCC
Q 029920           93 SSDLRRLDDCKM-ELDNLLKEERLSGASLLILANKQDINGALTPT-E------IAKVLNLEAMDKTRHWKIVGCSAYTGE  164 (185)
Q Consensus        93 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (185)
                      ++++++|+.+.. |+..+...  .++.|+++|+||+|+....... +      ................+++++||++|.
T Consensus        82 i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129          82 VDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence            999999999875 55544332  3479999999999984321110 0      000000011111122479999999999


Q ss_pred             CHHHHHHHHHHHHhhhcc
Q 029920          165 GLLEGFDWLVQDIASRIY  182 (185)
Q Consensus       165 ~i~~l~~~l~~~~~~~~~  182 (185)
                      |++++|+++.+.+...++
T Consensus       160 ~v~~~f~~l~~~~~~~~~  177 (187)
T cd04129         160 GVDDVFEAATRAALLVRK  177 (187)
T ss_pred             CHHHHHHHHHHHHhcccC
Confidence            999999999987765443

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.94  E-value=3.1e-26  Score=147.25  Aligned_cols=177  Identities=46%  Similarity=0.825  Sum_probs=160.0

Q ss_pred             CChHHHHHHhhc-cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcC-eEEEEEEcCCchhhHHHHH
Q 029920            1 MGLLSIIRKIKK-KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQK-YTLNIWDVGGQRTIRSYWR   78 (185)
Q Consensus         1 ~~~~~~~~~~~~-~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~   78 (185)
                      ||+.+++..... ..+.+|+.++|--|+||||++..|.+.......||.++....+.+++ +.+++||.+|+...+..|.
T Consensus         1 mgl~til~~~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWs   80 (185)
T KOG0074|consen    1 MGLETILCCCKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWS   80 (185)
T ss_pred             CcHHHHHHHhcCCCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhh
Confidence            788888877544 46679999999999999999999999999999999999999999977 8999999999999999999


Q ss_pred             hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEee
Q 029920           79 NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGC  158 (185)
Q Consensus        79 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (185)
                      .|+++.|.+|||+|.+|...|++..+.+.+++........|+.+.+||.|+..+...+++...+....+.. ..|++-+|
T Consensus        81 NYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrd-RswhIq~c  159 (185)
T KOG0074|consen   81 NYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRD-RSWHIQEC  159 (185)
T ss_pred             hhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhh-ceEEeeeC
Confidence            99999999999999999999999999999998887778899999999999988778888888887777766 78999999


Q ss_pred             cccCCCCHHHHHHHHHHHHh
Q 029920          159 SAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      ||.++.++.+-.+|+.+...
T Consensus       160 sals~eg~~dg~~wv~sn~~  179 (185)
T KOG0074|consen  160 SALSLEGSTDGSDWVQSNPE  179 (185)
T ss_pred             ccccccCccCcchhhhcCCC
Confidence            99999999998888876543

>cd01898 Obg Obg subfamily

Probab=99.94  E-value=9.2e-26  Score=155.98  Aligned_cols=155  Identities=25%  Similarity=0.214  Sum_probs=108.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCe-EEEEEEcCCchh-------hHHHHHhhhcCCCE
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKY-TLNIWDVGGQRT-------IRSYWRNYFEQTDG   86 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~-------~~~~~~~~~~~~d~   86 (185)
                      +|+++|++|||||||+++|.+....   ....|.......+...+. .+.+|||||+.+       +...+...+..+|+
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~   81 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL   81 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence            5899999999999999999876542   111233333444555665 999999999632       12222233456999


Q ss_pred             EEEEEeCCCc-ccHHHHHHHHHHHHhccc-cCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920           87 LVWVVDSSDL-RRLDDCKMELDNLLKEER-LSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE  164 (185)
Q Consensus        87 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (185)
                      +++|+|++++ .+++....+...+..... ..++|+++|+||+|+.+.....+....+..    .....+++++||+++.
T Consensus        82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~  157 (170)
T cd01898          82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLK----ELWGKPVFPISALTGE  157 (170)
T ss_pred             EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHh----hCCCCCEEEEecCCCC
Confidence            9999999998 788887777666654321 236899999999998665443333222211    1024578999999999


Q ss_pred             CHHHHHHHHHHH
Q 029920          165 GLLEGFDWLVQD  176 (185)
Q Consensus       165 ~i~~l~~~l~~~  176 (185)
                      |++++++++.+.
T Consensus       158 gi~~l~~~i~~~  169 (170)
T cd01898         158 GLDELLRKLAEL  169 (170)
T ss_pred             CHHHHHHHHHhh
Confidence            999999998865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.1e-27  Score=156.88  Aligned_cols=164  Identities=21%  Similarity=0.353  Sum_probs=131.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEE-----------cCeEEEEEEcCCchhhHHHHHh
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTY-----------QKYTLNIWDVGGQRTIRSYWRN   79 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~-----------~~~~~~~~D~~g~~~~~~~~~~   79 (185)
                      ...++...+|++|+||||++.+...+++. ....|+++..  +.+-+           ..+.+++|||+|+++|+++...
T Consensus         7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA   86 (219)
T KOG0081|consen    7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA   86 (219)
T ss_pred             HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence            44578889999999999999999988884 3344555332  22222           1268999999999999999999


Q ss_pred             hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeec
Q 029920           80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCS  159 (185)
Q Consensus        80 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (185)
                      +++.+=++++++|+++..||-+.+.|+.++..+.-+.++-+++++||+|+.+..   .+++....+... ..+.|+|++|
T Consensus        87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R---~Vs~~qa~~La~-kyglPYfETS  162 (219)
T KOG0081|consen   87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQR---VVSEDQAAALAD-KYGLPYFETS  162 (219)
T ss_pred             HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhh---hhhHHHHHHHHH-HhCCCeeeec
Confidence            999999999999999999999999999998877777788899999999996542   222222222222 3788999999


Q ss_pred             ccCCCCHHHHHHHHHHHHhhhc
Q 029920          160 AYTGEGLLEGFDWLVQDIASRI  181 (185)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~~~  181 (185)
                      |-+|.|+++..+.+.+.+.+++
T Consensus       163 A~tg~Nv~kave~LldlvM~Ri  184 (219)
T KOG0081|consen  163 ACTGTNVEKAVELLLDLVMKRI  184 (219)
T ss_pred             cccCcCHHHHHHHHHHHHHHHH
Confidence            9999999999999988887665

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.94  E-value=5.3e-26  Score=159.62  Aligned_cols=159  Identities=20%  Similarity=0.303  Sum_probs=130.7

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      ...||+++|.+|+|||+|..++.++.+. .+.||++.. .+.+.++  ...+.++||+|++++..+...++...|++++|
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            4689999999999999999999888885 668888743 3334444  46788999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      |+++++.||+.+..++..+.+......+|+++|+||+|+...  ...++-.. +     +....++|+++||+.+.|+++
T Consensus        82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~-l-----a~~~~~~f~E~Sak~~~~v~~  155 (196)
T KOG0395|consen   82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKA-L-----ARSWGCAFIETSAKLNYNVDE  155 (196)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHH-H-----HHhcCCcEEEeeccCCcCHHH
Confidence            999999999999999999966656667899999999999763  22222222 1     222566799999999999999


Q ss_pred             HHHHHHHHHhh
Q 029920          169 GFDWLVQDIAS  179 (185)
Q Consensus       169 l~~~l~~~~~~  179 (185)
                      +|..|++.+..
T Consensus       156 ~F~~L~r~~~~  166 (196)
T KOG0395|consen  156 VFYELVREIRL  166 (196)
T ss_pred             HHHHHHHHHHh
Confidence            99999998765

>PRK15494 era GTPase Era; Provisional

Probab=99.94  E-value=2.9e-25  Score=168.47  Aligned_cols=162  Identities=20%  Similarity=0.296  Sum_probs=114.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCc----ceEEEEEEEcCeEEEEEEcCCchhh-H-------HHHHhhh
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTL----GFNIKTVTYQKYTLNIWDVGGQRTI-R-------SYWRNYF   81 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~D~~g~~~~-~-------~~~~~~~   81 (185)
                      .+.++|+++|.+|+|||||+|+|.+..+...++..    ......+..++.++.+|||||.... .       .....++
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l  129 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL  129 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence            45679999999999999999999998886554433    3344456677889999999997432 1       1122346


Q ss_pred             cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeeccc
Q 029920           82 EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAY  161 (185)
Q Consensus        82 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (185)
                      ..+|++++|+|..+  ++.....++...+..   .+.|.++|+||+|+.+. ...+....+..    ......++++||+
T Consensus       130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~----~~~~~~i~~iSAk  199 (339)
T PRK15494        130 HSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTE----NHPDSLLFPISAL  199 (339)
T ss_pred             hhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHh----cCCCcEEEEEecc
Confidence            79999999999765  344443333333332   24677889999998653 23333333321    1123579999999


Q ss_pred             CCCCHHHHHHHHHHHHhhhcccCC
Q 029920          162 TGEGLLEGFDWLVQDIASRIYLLD  185 (185)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~~~~~~~  185 (185)
                      +|.|+++++++|.+.+.+.-|++|
T Consensus       200 tg~gv~eL~~~L~~~l~~~~~~~~  223 (339)
T PRK15494        200 SGKNIDGLLEYITSKAKISPWLYA  223 (339)
T ss_pred             CccCHHHHHHHHHHhCCCCCCCCC
Confidence            999999999999999988777664

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.94  E-value=1.8e-25  Score=157.95  Aligned_cols=147  Identities=20%  Similarity=0.320  Sum_probs=108.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE--EEEEEE-------cCeEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN--IKTVTY-------QKYTLNIWDVGGQRTIRSYWRNYFEQTDG   86 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~--~~~~~~-------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~   86 (185)
                      +||+++|++|+|||||++++.++.+. .+.+|.+..  .+.+.+       ..+.+.+|||+|++.+..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            58999999999999999999998875 456777633  333444       23689999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhcc------------------ccCCCeEEEEeecCCCCCCCCHHHHHHhcCccccc
Q 029920           87 LVWVVDSSDLRRLDDCKMELDNLLKEE------------------RLSGASLLILANKQDINGALTPTEIAKVLNLEAMD  148 (185)
Q Consensus        87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  148 (185)
                      +|+|||+++++||+++..|+..+....                  ...+.|+++|+||+|+.+...............++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999988886531                  12468999999999986532111111111111222


Q ss_pred             CccceEEEeecccCC
Q 029920          149 KTRHWKIVGCSAYTG  163 (185)
Q Consensus       149 ~~~~~~~~~~Sa~~~  163 (185)
                      ...+.+.+..+++++
T Consensus       161 ~~~~~~~i~~~c~~~  175 (202)
T cd04102         161 EQGNAEEINLNCTNG  175 (202)
T ss_pred             HhcCCceEEEecCCc
Confidence            235556677777654

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>TIGR00436 era GTP-binding protein Era

Probab=99.94  E-value=2e-25  Score=164.92  Aligned_cols=157  Identities=18%  Similarity=0.132  Sum_probs=108.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEE----EEEEEcCeEEEEEEcCCchhh--------HHHHHhhhcCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNI----KTVTYQKYTLNIWDVGGQRTI--------RSYWRNYFEQTD   85 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~~~d   85 (185)
                      +|+++|.||+|||||+|+|.+.+....++..+++.    .....++.++.++||||....        ......++..+|
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD   81 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD   81 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence            68999999999999999999988765554333322    223345678999999996432        112345678999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           86 GLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      ++++|+|+++..+..   ..+...+..   .+.|+++|+||+|+.......+....+..    .....+++++||++|.|
T Consensus        82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~----~~~~~~v~~iSA~~g~g  151 (270)
T TIGR00436        82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAI----LEDFKDIVPISALTGDN  151 (270)
T ss_pred             EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHh----hcCCCceEEEecCCCCC
Confidence            999999999876654   223333332   36899999999998643221111111111    11222789999999999


Q ss_pred             HHHHHHHHHHHHhhhcccC
Q 029920          166 LLEGFDWLVQDIASRIYLL  184 (185)
Q Consensus       166 i~~l~~~l~~~~~~~~~~~  184 (185)
                      ++++++++.+.+.+.-|.+
T Consensus       152 i~~L~~~l~~~l~~~~~~~  170 (270)
T TIGR00436       152 TSFLAAFIEVHLPEGPFRY  170 (270)
T ss_pred             HHHHHHHHHHhCCCCCCCC
Confidence            9999999999987765544

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01878 HflX HflX subfamily

Probab=99.94  E-value=4.6e-25  Score=156.94  Aligned_cols=154  Identities=23%  Similarity=0.237  Sum_probs=108.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcC-eEEEEEEcCCchh---------hHHHHHh
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQK-YTLNIWDVGGQRT---------IRSYWRN   79 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~---------~~~~~~~   79 (185)
                      .+..++|+++|++|||||||++++.+....   ...+|.......+...+ ..+.+|||||...         +... ..
T Consensus        38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~  116 (204)
T cd01878          38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRST-LE  116 (204)
T ss_pred             hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHH-HH
Confidence            455689999999999999999999987642   22344444444555555 4899999999722         2222 12


Q ss_pred             hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeec
Q 029920           80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCS  159 (185)
Q Consensus        80 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (185)
                      .+..+|++++|+|++++.++.....+.. .+......+.|+++|+||+|+.......   ..     .. ....+++++|
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~-~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~-----~~-~~~~~~~~~S  186 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEK-VLKELGAEDIPMILVLNKIDLLDDEELE---ER-----LE-AGRPDAVFIS  186 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHH-HHHHcCcCCCCEEEEEEccccCChHHHH---HH-----hh-cCCCceEEEE
Confidence            3568999999999999877766544333 3333333468999999999986543222   11     11 1456799999


Q ss_pred             ccCCCCHHHHHHHHHHHH
Q 029920          160 AYTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       160 a~~~~~i~~l~~~l~~~~  177 (185)
                      |+++.|+++++++|.+.+
T Consensus       187 a~~~~gi~~l~~~L~~~~  204 (204)
T cd01878         187 AKTGEGLDELLEAIEELL  204 (204)
T ss_pred             cCCCCCHHHHHHHHHhhC
Confidence            999999999999988753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04171 SelB SelB subfamily

Probab=99.94  E-value=2.4e-25  Score=152.85  Aligned_cols=151  Identities=22%  Similarity=0.170  Sum_probs=102.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcc------cccCcceEEEEEEEc-CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSV------ISPTLGFNIKTVTYQ-KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~------~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      .|+++|++|+|||||+++|.+.....      ...|.......+.+. +..+.+|||||++.+......++..+|++++|
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V   81 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV   81 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence            68999999999999999999753211      122444444455555 77999999999998877777788899999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH----HHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP----TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL  166 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (185)
                      +|+++... ......+. .+...  ...|+++++||+|+......    .++.+.+...   .....+++++||+++.|+
T Consensus        82 ~d~~~~~~-~~~~~~~~-~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v  154 (164)
T cd04171          82 VAADEGIM-PQTREHLE-ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT---FLADAPIFPVSAVTGEGI  154 (164)
T ss_pred             EECCCCcc-HhHHHHHH-HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc---CcCCCcEEEEeCCCCcCH
Confidence            99987211 11112122 12211  12489999999998654211    1222222110   013568999999999999


Q ss_pred             HHHHHHHHH
Q 029920          167 LEGFDWLVQ  175 (185)
Q Consensus       167 ~~l~~~l~~  175 (185)
                      +++++.+.+
T Consensus       155 ~~l~~~l~~  163 (164)
T cd04171         155 EELKEYLDE  163 (164)
T ss_pred             HHHHHHHhh
Confidence            999998764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=7.4e-25  Score=141.15  Aligned_cols=162  Identities=20%  Similarity=0.310  Sum_probs=131.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEE--cCeEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTY--QKYTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      .+..+|.+++|+-|+|||+|++.+..+++- ..-+|+++..  +.++.  ...++++|||+|+++|+...+.|++++.+.
T Consensus         8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga   87 (215)
T KOG0097|consen    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   87 (215)
T ss_pred             hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence            345789999999999999999999998884 4555666443  34444  447899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      +.|||++.+.++..+..|+.+.... ..++..+++++||.|+...  ...++.++.-.      .++.-|.++||++|.|
T Consensus        88 lmvyditrrstynhlsswl~dar~l-tnpnt~i~lignkadle~qrdv~yeeak~fae------engl~fle~saktg~n  160 (215)
T KOG0097|consen   88 LMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLESQRDVTYEEAKEFAE------ENGLMFLEASAKTGQN  160 (215)
T ss_pred             eEEEEehhhhhhhhHHHHHhhhhcc-CCCceEEEEecchhhhhhcccCcHHHHHHHHh------hcCeEEEEecccccCc
Confidence            9999999999999999998886443 5677889999999998643  23333333222      2788899999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 029920          166 LLEGFDWLVQDIASRI  181 (185)
Q Consensus       166 i~~l~~~l~~~~~~~~  181 (185)
                      +++.|-...+.+.+++
T Consensus       161 vedafle~akkiyqni  176 (215)
T KOG0097|consen  161 VEDAFLETAKKIYQNI  176 (215)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999988888877654

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.94  E-value=4.2e-25  Score=152.32  Aligned_cols=155  Identities=21%  Similarity=0.176  Sum_probs=107.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCccc---ccCcceEEEEEEEc---CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVI---SPTLGFNIKTVTYQ---KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~---~~t~~~~~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      .|+++|++|+|||||+++|.+..+...   ..+.......+...   +..+.+|||||++.+...+..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            589999999999999999998776543   22332333334443   678999999999988888888889999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhc---Ccccc-cCccceEEEeecccCCCCHH
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVL---NLEAM-DKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      |+++....+ ....+..+ .   ..++|+++|+||+|+.... .......+   ..... .....++++++||++|.|++
T Consensus        82 d~~~~~~~~-~~~~~~~~-~---~~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  155 (168)
T cd01887          82 AADDGVMPQ-TIEAIKLA-K---AANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID  155 (168)
T ss_pred             ECCCCccHH-HHHHHHHH-H---HcCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence            998743222 11112222 2   2368999999999986542 22222211   11110 11135689999999999999


Q ss_pred             HHHHHHHHHHh
Q 029920          168 EGFDWLVQDIA  178 (185)
Q Consensus       168 ~l~~~l~~~~~  178 (185)
                      +++++|.+...
T Consensus       156 ~l~~~l~~~~~  166 (168)
T cd01887         156 DLLEAILLLAE  166 (168)
T ss_pred             HHHHHHHHhhh
Confidence            99999987654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.93  E-value=2.1e-26  Score=150.73  Aligned_cols=164  Identities=24%  Similarity=0.307  Sum_probs=127.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcccc-cCcc--eEEEEEEE--cCeEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVIS-PTLG--FNIKTVTY--QKYTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~-~t~~--~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      +.-.||++++|..=+|||+|+-+++.++|...- .|..  +..+.+.+  ....+.+|||+|++.|.++-+.|+++++++
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa   89 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA   89 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence            556799999999999999999999998885321 2222  33333333  346899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      ++|||++|++||+....|..++.... ...+-+++|+||+|+.+....   ... ..+..+..-+..++++||+.+.||.
T Consensus        90 lLVyDITDrdSFqKVKnWV~Elr~ml-Gnei~l~IVGNKiDLEeeR~V---t~q-eAe~YAesvGA~y~eTSAk~N~Gi~  164 (218)
T KOG0088|consen   90 LLVYDITDRDSFQKVKNWVLELRTML-GNEIELLIVGNKIDLEEERQV---TRQ-EAEAYAESVGALYMETSAKDNVGIS  164 (218)
T ss_pred             EEEEeccchHHHHHHHHHHHHHHHHh-CCeeEEEEecCcccHHHhhhh---hHH-HHHHHHHhhchhheecccccccCHH
Confidence            99999999999999999999986653 345889999999998543221   111 1112233356779999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 029920          168 EGFDWLVQDIASRI  181 (185)
Q Consensus       168 ~l~~~l~~~~~~~~  181 (185)
                      ++|+.+...+.+..
T Consensus       165 elFe~Lt~~MiE~~  178 (218)
T KOG0088|consen  165 ELFESLTAKMIEHS  178 (218)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999998876654

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.93  E-value=8.8e-25  Score=164.92  Aligned_cols=159  Identities=24%  Similarity=0.233  Sum_probs=115.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEE-cCeEEEEEEcCCchh-------hHHHHHhhhcCCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTY-QKYTLNIWDVGGQRT-------IRSYWRNYFEQTD   85 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d   85 (185)
                      ..|+++|.||||||||+++|.+....   ....|.......+.+ +...+.+||+||..+       +...+..+++.++
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~  238 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR  238 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence            47999999999999999999976542   123455555666666 557899999999632       3344555678899


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhccc-cCCCeEEEEeecCCCCCCCCHHH-HHHhcCcccccCccceEEEeecccCC
Q 029920           86 GLVWVVDSSDLRRLDDCKMELDNLLKEER-LSGASLLILANKQDINGALTPTE-IAKVLNLEAMDKTRHWKIVGCSAYTG  163 (185)
Q Consensus        86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (185)
                      ++++|+|+++.++++....|...+..+.. ..++|+++|+||+|+.......+ ....+    .. ...++++++||+++
T Consensus       239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~----~~-~~~~~i~~iSAktg  313 (335)
T PRK12299        239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE----LA-ALGGPVFLISAVTG  313 (335)
T ss_pred             EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH----HH-hcCCCEEEEEcCCC
Confidence            99999999987778877777666654422 24689999999999865432221 11111    11 13467999999999


Q ss_pred             CCHHHHHHHHHHHHhhh
Q 029920          164 EGLLEGFDWLVQDIASR  180 (185)
Q Consensus       164 ~~i~~l~~~l~~~~~~~  180 (185)
                      .|+++++++|.+.+.+.
T Consensus       314 ~GI~eL~~~L~~~l~~~  330 (335)
T PRK12299        314 EGLDELLRALWELLEEA  330 (335)
T ss_pred             CCHHHHHHHHHHHHHhh
Confidence            99999999999988654

>cd01890 LepA LepA subfamily

Probab=99.93  E-value=4e-25  Score=154.08  Aligned_cols=152  Identities=18%  Similarity=0.195  Sum_probs=104.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC--------ccccc------CcceEEE----EE-----EEcCeEEEEEEcCCchhhH
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT--------SVISP------TLGFNIK----TV-----TYQKYTLNIWDVGGQRTIR   74 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~--------~~~~~------t~~~~~~----~~-----~~~~~~~~~~D~~g~~~~~   74 (185)
                      +|+++|++|+|||||+++|.+...        ..+.+      +.+.+..    .+     ...+..+.+|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            689999999999999999986421        11111      1122211    12     2245789999999999999


Q ss_pred             HHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceE
Q 029920           75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWK  154 (185)
Q Consensus        75 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (185)
                      ..+..++..+|++++|+|+++..++.....+. ....    .++|+++|+||+|+.+... .+....+... . ......
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~-~~~~----~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~-~-~~~~~~  153 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFY-LALE----NNLEIIPVINKIDLPSADP-ERVKQQIEDV-L-GLDPSE  153 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHH-HHHH----cCCCEEEEEECCCCCcCCH-HHHHHHHHHH-h-CCCccc
Confidence            99999999999999999999876655443332 2222    3689999999999865322 2111112111 0 102235


Q ss_pred             EEeecccCCCCHHHHHHHHHHHH
Q 029920          155 IVGCSAYTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       155 ~~~~Sa~~~~~i~~l~~~l~~~~  177 (185)
                      ++++||++|.|++++++++.+.+
T Consensus       154 ~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         154 AILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EEEeeccCCCCHHHHHHHHHhhC
Confidence            89999999999999999998765

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.93  E-value=1.2e-24  Score=165.44  Aligned_cols=151  Identities=24%  Similarity=0.257  Sum_probs=110.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEE-cCeEEEEEEcCCc---------hhhHHHHHhh
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTY-QKYTLNIWDVGGQ---------RTIRSYWRNY   80 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~-~~~~~~~~D~~g~---------~~~~~~~~~~   80 (185)
                      ...++|+++|.+|+|||||+|+|++....   ....|..+....+.+ ++..+.+|||||.         +.+.... ..
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~  265 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EE  265 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence            45699999999999999999999997642   335666677777777 5689999999997         2233322 24


Q ss_pred             hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecc
Q 029920           81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSA  160 (185)
Q Consensus        81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (185)
                      +..+|++++|+|++++.+++....+ ..++......+.|+++|+||+|+.+..   +......       ...+++++||
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~~~~-~~~L~~l~~~~~piIlV~NK~Dl~~~~---~v~~~~~-------~~~~~i~iSA  334 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQIEAV-EKVLEELGAEDIPQLLVYNKIDLLDEP---RIERLEE-------GYPEAVFVSA  334 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHHHHH-HHHHHHhccCCCCEEEEEEeecCCChH---hHHHHHh-------CCCCEEEEEc
Confidence            6789999999999998776655433 334444334478999999999986532   2211111       1235899999


Q ss_pred             cCCCCHHHHHHHHHHH
Q 029920          161 YTGEGLLEGFDWLVQD  176 (185)
Q Consensus       161 ~~~~~i~~l~~~l~~~  176 (185)
                      ++|.|+++++++|.+.
T Consensus       335 ktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       335 KTGEGLDLLLEAIAER  350 (351)
T ss_pred             cCCCCHHHHHHHHHhh
Confidence            9999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.93  E-value=9.1e-26  Score=151.79  Aligned_cols=145  Identities=25%  Similarity=0.272  Sum_probs=99.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCeEEEEEEcCCchh------hHHHHHhhh--cCCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKYTLNIWDVGGQRT------IRSYWRNYF--EQTD   85 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~------~~~~~~~~~--~~~d   85 (185)
                      ++|+++|.||||||||+|+|+|.+..   ..+.|.......+.+.+..+.++|+||..+      .......++  +..|
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D   80 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD   80 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence            68999999999999999999999853   233455566667788899999999999322      123334443  6899


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           86 GLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      ++++|+|+++.   +.......++++.    ++|+++++||+|........-..+.+.     ...++|++++||+++.|
T Consensus        81 ~ii~VvDa~~l---~r~l~l~~ql~e~----g~P~vvvlN~~D~a~~~g~~id~~~Ls-----~~Lg~pvi~~sa~~~~g  148 (156)
T PF02421_consen   81 LIIVVVDATNL---ERNLYLTLQLLEL----GIPVVVVLNKMDEAERKGIEIDAEKLS-----ERLGVPVIPVSARTGEG  148 (156)
T ss_dssp             EEEEEEEGGGH---HHHHHHHHHHHHT----TSSEEEEEETHHHHHHTTEEE-HHHHH-----HHHTS-EEEEBTTTTBT
T ss_pred             EEEEECCCCCH---HHHHHHHHHHHHc----CCCEEEEEeCHHHHHHcCCEECHHHHH-----HHhCCCEEEEEeCCCcC
Confidence            99999999873   3333334444433    799999999999754433211111111     12467899999999999


Q ss_pred             HHHHHHHH
Q 029920          166 LLEGFDWL  173 (185)
Q Consensus       166 i~~l~~~l  173 (185)
                      ++++++.|
T Consensus       149 ~~~L~~~I  156 (156)
T PF02421_consen  149 IDELKDAI  156 (156)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhhC
Confidence            99998865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.93  E-value=9.1e-27  Score=148.42  Aligned_cols=155  Identities=21%  Similarity=0.373  Sum_probs=121.6

Q ss_pred             EEEcCCCCChHHHHHHHhCCCCc--ccccCcceEEE--EEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeC
Q 029920           20 LMVGLDNSGKTTIVLKINGEDTS--VISPTLGFNIK--TVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDS   93 (185)
Q Consensus        20 ~v~G~~~~GKttli~~l~~~~~~--~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   93 (185)
                      +++|++++|||+|+-++..+.+-  ...+|.++..+  .+..+  .+++++|||+|+++|++....|++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            36899999999998887776663  23355554333  33443  47899999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC-CCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHH
Q 029920           94 SDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA-LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDW  172 (185)
Q Consensus        94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (185)
                      .+..||+++..|+.++.++ ......+++++||||+..+ ....+.-+.+     ++..++||+++||++|.|++-.|-.
T Consensus        81 ankasfdn~~~wlsei~ey-~k~~v~l~llgnk~d~a~er~v~~ddg~kl-----a~~y~ipfmetsaktg~nvd~af~~  154 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEY-AKEAVALMLLGNKCDLAHERAVKRDDGEKL-----AEAYGIPFMETSAKTGFNVDLAFLA  154 (192)
T ss_pred             ccchhHHHHHHHHHHHHHH-HHhhHhHhhhccccccchhhccccchHHHH-----HHHHCCCceeccccccccHhHHHHH
Confidence            9999999999999998777 4445789999999998542 2222222222     2226789999999999999999999


Q ss_pred             HHHHHhhh
Q 029920          173 LVQDIASR  180 (185)
Q Consensus       173 l~~~~~~~  180 (185)
                      |.+.+.+.
T Consensus       155 ia~~l~k~  162 (192)
T KOG0083|consen  155 IAEELKKL  162 (192)
T ss_pred             HHHHHHHh
Confidence            99887654

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.93  E-value=1.6e-24  Score=152.01  Aligned_cols=156  Identities=22%  Similarity=0.254  Sum_probs=112.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcccc-------------------cCcceEEEEEEEcCeEEEEEEcCCchhhHHHHH
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVIS-------------------PTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWR   78 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~   78 (185)
                      +|+++|.+|+|||||+++|.+.......                   .+.......+...+..+.++||||...+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            4899999999999999999877664321                   122233444566778999999999998888888


Q ss_pred             hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHH----HHHhcCcccc-------
Q 029920           79 NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTE----IAKVLNLEAM-------  147 (185)
Q Consensus        79 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~----~~~~~~~~~~-------  147 (185)
                      .++..+|++++|+|+.++.+... ...+... .   ..+.|+++++||+|+........    +...+.....       
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~-~---~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQT-REHLRIA-R---EGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG  155 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHH-HHHHHHH-H---HCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence            99999999999999987654332 2222222 2   24799999999999976433222    2233322111       


Q ss_pred             -cCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          148 -DKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       148 -~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                       ......+++++||++|.|++++++++.+.+.
T Consensus       156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             cccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence             0124678999999999999999999988764

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>COG1159 Era GTPase [General function prediction only]

Probab=99.93  E-value=9.6e-25  Score=157.72  Aligned_cols=163  Identities=19%  Similarity=0.218  Sum_probs=119.8

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEE----EEEcCeEEEEEEcCCchh--------hHHHHHhhh
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT----VTYQKYTLNIWDVGGQRT--------IRSYWRNYF   81 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~--------~~~~~~~~~   81 (185)
                      .+.-.|+++|.||+|||||+|++.|.+.+..++...++...    +..++.++.++||||...        +.......+
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl   83 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL   83 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence            34557999999999999999999999999888866655544    345789999999999433        233344557


Q ss_pred             cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecc
Q 029920           82 EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSA  160 (185)
Q Consensus        82 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (185)
                      ..+|+++||+|+.++-.  ....++.+.++.   .+.|+++++||+|...... .....+.+... .   ....++++||
T Consensus        84 ~dvDlilfvvd~~~~~~--~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~-~---~f~~ivpiSA  154 (298)
T COG1159          84 KDVDLILFVVDADEGWG--PGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKL-L---PFKEIVPISA  154 (298)
T ss_pred             ccCcEEEEEEeccccCC--ccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhh-C---CcceEEEeec
Confidence            88999999999997322  222333333332   3689999999999876644 23333333221 1   3336899999


Q ss_pred             cCCCCHHHHHHHHHHHHhhhcccCC
Q 029920          161 YTGEGLLEGFDWLVQDIASRIYLLD  185 (185)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~~~~~~~~  185 (185)
                      ++|.|++.+.+.+...+.+.-+.+|
T Consensus       155 ~~g~n~~~L~~~i~~~Lpeg~~~yp  179 (298)
T COG1159         155 LKGDNVDTLLEIIKEYLPEGPWYYP  179 (298)
T ss_pred             cccCCHHHHHHHHHHhCCCCCCcCC
Confidence            9999999999999999988877764

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.93  E-value=3e-24  Score=169.74  Aligned_cols=160  Identities=22%  Similarity=0.232  Sum_probs=112.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcc----eEEEEEEEcCeEEEEEEcCCch----------hhHHH-HH
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLG----FNIKTVTYQKYTLNIWDVGGQR----------TIRSY-WR   78 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~D~~g~~----------~~~~~-~~   78 (185)
                      ...++|+++|.+|+|||||+|+|++......++..+    .....+.+++..+.+|||||..          .+... ..
T Consensus       209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~  288 (472)
T PRK03003        209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTH  288 (472)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHH
Confidence            346899999999999999999999987643333333    3344566788889999999952          22222 23


Q ss_pred             hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEee
Q 029920           79 NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGC  158 (185)
Q Consensus        79 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (185)
                      .+++.+|++++|+|++++.+++... ++..+..    .++|+++|+||+|+.+............. .+......+++++
T Consensus       289 ~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~-~l~~~~~~~~~~~  362 (472)
T PRK03003        289 AAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDR-ELAQVPWAPRVNI  362 (472)
T ss_pred             HHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHH-hcccCCCCCEEEE
Confidence            4578999999999999987777653 2333322    47999999999999754322222222211 1112234678999


Q ss_pred             cccCCCCHHHHHHHHHHHHhh
Q 029920          159 SAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                      ||++|.|++++|+.+.+.+.+
T Consensus       363 SAk~g~gv~~lf~~i~~~~~~  383 (472)
T PRK03003        363 SAKTGRAVDKLVPALETALES  383 (472)
T ss_pred             ECCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999987753

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.93  E-value=3.4e-24  Score=161.62  Aligned_cols=156  Identities=25%  Similarity=0.275  Sum_probs=112.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcC-eEEEEEEcCCchh-------hHHHHHhhhcCCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQK-YTLNIWDVGGQRT-------IRSYWRNYFEQTD   85 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~-------~~~~~~~~~~~~d   85 (185)
                      ..|+++|.||+|||||+++|.+....   ....|.......+.+++ ..+.++|+||..+       +...+..+++.++
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad  237 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR  237 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence            57999999999999999999986542   12335555566667766 8999999999642       3334445567899


Q ss_pred             EEEEEEeCCCc---ccHHHHHHHHHHHHhcc-ccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeeccc
Q 029920           86 GLVWVVDSSDL---RRLDDCKMELDNLLKEE-RLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAY  161 (185)
Q Consensus        86 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (185)
                      ++++|+|+++.   ++++....+..++..+. ...++|+++|+||+|+.......+..+.+..     ..+.+++++||+
T Consensus       238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~-----~~~~~vi~iSAk  312 (329)
T TIGR02729       238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKK-----ALGKPVFPISAL  312 (329)
T ss_pred             EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHH-----HcCCcEEEEEcc
Confidence            99999999976   56666655555554332 2347899999999999765333333332221     124579999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 029920          162 TGEGLLEGFDWLVQDI  177 (185)
Q Consensus       162 ~~~~i~~l~~~l~~~~  177 (185)
                      ++.|+++++++|.+.+
T Consensus       313 tg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       313 TGEGLDELLYALAELL  328 (329)
T ss_pred             CCcCHHHHHHHHHHHh
Confidence            9999999999998765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.92  E-value=9.3e-25  Score=146.81  Aligned_cols=134  Identities=20%  Similarity=0.184  Sum_probs=91.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCch-----hhHHHHHhhhcCCCEEEEEEe
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQR-----TIRSYWRNYFEQTDGLVWVVD   92 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~d~~i~v~d   92 (185)
                      ||+++|++|+|||||+++|.+..+. +.+|.+.     .+..   .+|||||..     .+.... ..++++|++++|+|
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~-----~~~~---~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vilv~d   71 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAV-----EYND---GAIDTPGEYVENRRLYSALI-VTAADADVIALVQS   71 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc-cccceeE-----EEcC---eeecCchhhhhhHHHHHHHH-HHhhcCCEEEEEec
Confidence            7999999999999999999988653 2233322     2222   689999973     233333 34789999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC-CHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHH
Q 029920           93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL-TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFD  171 (185)
Q Consensus        93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (185)
                      ++++.++... .+ ...   .   ..|+++|+||+|+.+.. ..++.......     ....+++++||++|.|++++|+
T Consensus        72 ~~~~~s~~~~-~~-~~~---~---~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~  138 (142)
T TIGR02528        72 ATDPESRFPP-GF-ASI---F---VKPVIGLVTKIDLAEADVDIERAKELLET-----AGAEPIFEISSVDEQGLEALVD  138 (142)
T ss_pred             CCCCCcCCCh-hH-HHh---c---cCCeEEEEEeeccCCcccCHHHHHHHHHH-----cCCCcEEEEecCCCCCHHHHHH
Confidence            9998887542 22 221   1   24999999999986432 22222221111     0223789999999999999999


Q ss_pred             HHH
Q 029920          172 WLV  174 (185)
Q Consensus       172 ~l~  174 (185)
                      ++.
T Consensus       139 ~l~  141 (142)
T TIGR02528       139 YLN  141 (142)
T ss_pred             HHh
Confidence            874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PRK04213 GTP-binding protein; Provisional

Probab=99.92  E-value=1.1e-24  Score=154.66  Aligned_cols=160  Identities=23%  Similarity=0.294  Sum_probs=100.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEE--EEEEEcCeEEEEEEcCC-----------chhhHHHHHh
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNI--KTVTYQKYTLNIWDVGG-----------QRTIRSYWRN   79 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~   79 (185)
                      +...++|+++|.+|+|||||+++|.+..+. .....+.+.  ..+..+  .+.+|||||           ++.++..+..
T Consensus         6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   82 (201)
T PRK04213          6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR   82 (201)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence            445789999999999999999999987754 222223332  223333  689999999           4555555555


Q ss_pred             hhc----CCCEEEEEEeCCCcccH-HH--------HHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCc
Q 029920           80 YFE----QTDGLVWVVDSSDLRRL-DD--------CKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNL  144 (185)
Q Consensus        80 ~~~----~~d~~i~v~d~~~~~s~-~~--------~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~  144 (185)
                      ++.    .++++++|+|.++.... +.        ....+...+.   ..++|+++|+||+|+....  ...++...++.
T Consensus        83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~  159 (201)
T PRK04213         83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNRDEVLDEIAERLGL  159 (201)
T ss_pred             HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcHHHHHHHHHHHhcC
Confidence            543    45788889988653221 00        0111122222   2379999999999986543  12223333321


Q ss_pred             ccccCccceEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920          145 EAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       145 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                      .........+++++||++| |+++++++|.+.+.+
T Consensus       160 ~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        160 YPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             CccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            1000001236899999999 999999999998755

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.92  E-value=1.4e-23  Score=142.76  Aligned_cols=153  Identities=22%  Similarity=0.346  Sum_probs=112.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      .+||+++|++|+|||||++++.+.... ...++.+  .....+..++  ..+.+||+||+..+...+..+++.++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            479999999999999999999988753 2333333  3333355666  7899999999999988888889999999999


Q ss_pred             EeCCCc-ccHHHHH-HHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920           91 VDSSDL-RRLDDCK-MELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus        91 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      +|.... .++.... .+...+.... ..+.|+++++||+|+............+..     ....+++++||+++.|+++
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~gv~~  154 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHA-ESNVPIILVGNKIDLRDAKLKTHVAFLFAK-----LNGEPIIPLSAETGKNIDS  154 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhc-ccCCcEEEEEEcccCCcchhhHHHHHHHhh-----ccCCceEEeecCCCCCHHH
Confidence            998876 5665555 4444443332 227899999999999764323333332222     1345699999999999999


Q ss_pred             HHHHHH
Q 029920          169 GFDWLV  174 (185)
Q Consensus       169 l~~~l~  174 (185)
                      ++++|.
T Consensus       155 ~~~~l~  160 (161)
T TIGR00231       155 AFKIVE  160 (161)
T ss_pred             HHHHhh
Confidence            998863

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.92  E-value=9.9e-24  Score=143.70  Aligned_cols=143  Identities=22%  Similarity=0.293  Sum_probs=105.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEcCeEEEEEEcCCchhhHH--------HHHhhhcCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQKYTLNIWDVGGQRTIRS--------YWRNYFEQT   84 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~   84 (185)
                      ++|+++|++|+|||||++++.+.......+    +.......+..++..+.+|||||......        ....++..+
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~   81 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA   81 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence            589999999999999999999886533222    22233445566778999999999654321        233456789


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920           85 DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE  164 (185)
Q Consensus        85 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (185)
                      |++++|+|++++.+......+..       ..+.|+++|+||+|+.+....           .......+++++||+++.
T Consensus        82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~-----------~~~~~~~~~~~~Sa~~~~  143 (157)
T cd04164          82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL-----------LSLLAGKPIIAISAKTGE  143 (157)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc-----------ccccCCCceEEEECCCCC
Confidence            99999999998777665433222       347999999999998765333           112245689999999999


Q ss_pred             CHHHHHHHHHHHH
Q 029920          165 GLLEGFDWLVQDI  177 (185)
Q Consensus       165 ~i~~l~~~l~~~~  177 (185)
                      |+++++++|.+.+
T Consensus       144 ~v~~l~~~l~~~~  156 (157)
T cd04164         144 GLDELKEALLELA  156 (157)
T ss_pred             CHHHHHHHHHHhh
Confidence            9999999988764

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.92  E-value=7.9e-24  Score=167.33  Aligned_cols=154  Identities=21%  Similarity=0.289  Sum_probs=109.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceE----EEEEEEcCeEEEEEEcCCchh--------hHHHHHhh
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFN----IKTVTYQKYTLNIWDVGGQRT--------IRSYWRNY   80 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~   80 (185)
                      ..+.++|+++|.+|+|||||+|+|.+.......++.+.+    ...+.+++..+.+|||||.+.        +......+
T Consensus        35 ~~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         35 GGPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            345689999999999999999999998765555544433    334566788899999999752        34455667


Q ss_pred             hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecc
Q 029920           81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSA  160 (185)
Q Consensus        81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (185)
                      ++.+|++++|+|+++..++..  ..+...+..   .++|+++|+||+|+.....  +..+.... .    .. .++++||
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~-g----~~-~~~~iSA  181 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSL-G----LG-EPHPVSA  181 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhc-C----CC-CeEEEEc
Confidence            889999999999998765432  222333332   3799999999999864321  11111111 1    11 2468999


Q ss_pred             cCCCCHHHHHHHHHHHHhh
Q 029920          161 YTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~~  179 (185)
                      ++|.|++++++++++.+.+
T Consensus       182 ~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        182 LHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             CCCCCcHHHHHHHHhhccc
Confidence            9999999999999988754

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.92  E-value=9.2e-24  Score=165.72  Aligned_cols=159  Identities=23%  Similarity=0.219  Sum_probs=110.9

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcce----EEEEEEEcCeEEEEEEcCCchhhHH-----------HHHh
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGF----NIKTVTYQKYTLNIWDVGGQRTIRS-----------YWRN   79 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~----~~~~~~~~~~~~~~~D~~g~~~~~~-----------~~~~   79 (185)
                      ..++|+++|.+|+|||||+++|++.......+..++    ....+..++..+.+|||||......           ....
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~  250 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK  250 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence            458999999999999999999998775443333333    2334556778999999999643321           1234


Q ss_pred             hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC-CCCCHHHHHHhcCcccccCccceEEEee
Q 029920           80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN-GALTPTEIAKVLNLEAMDKTRHWKIVGC  158 (185)
Q Consensus        80 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (185)
                      +++.+|++++|+|++++.+.... ..+...    ...+.|+++|+||+|+. +....++....+.. .+......+++++
T Consensus       251 ~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~----~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~vi~~  324 (429)
T TIGR03594       251 AIERADVVLLVLDATEGITEQDL-RIAGLI----LEAGKALVIVVNKWDLVKDEKTREEFKKELRR-KLPFLDFAPIVFI  324 (429)
T ss_pred             HHHhCCEEEEEEECCCCccHHHH-HHHHHH----HHcCCcEEEEEECcccCCCHHHHHHHHHHHHH-hcccCCCCceEEE
Confidence            67899999999999987665543 222222    22378999999999997 22222233333322 2222245789999


Q ss_pred             cccCCCCHHHHHHHHHHHHhh
Q 029920          159 SAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                      ||++|.|++++++++.+...+
T Consensus       325 SA~~g~~v~~l~~~i~~~~~~  345 (429)
T TIGR03594       325 SALTGQGVDKLLDAIDEVYEN  345 (429)
T ss_pred             eCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999887653

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.92  E-value=4.6e-24  Score=148.13  Aligned_cols=152  Identities=23%  Similarity=0.226  Sum_probs=105.6

Q ss_pred             EEcCCCCChHHHHHHHhCCCC--cc-cccCcceEEEEEEEc-CeEEEEEEcCCchhh-------HHHHHhhhcCCCEEEE
Q 029920           21 MVGLDNSGKTTIVLKINGEDT--SV-ISPTLGFNIKTVTYQ-KYTLNIWDVGGQRTI-------RSYWRNYFEQTDGLVW   89 (185)
Q Consensus        21 v~G~~~~GKttli~~l~~~~~--~~-~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~-------~~~~~~~~~~~d~~i~   89 (185)
                      ++|++|+|||||+++|.+...  .. ...|.......+.++ +..+.+|||||....       ......++..+|++++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~   80 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH   80 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence            589999999999999999864  11 223334444456667 889999999996321       1123445678999999


Q ss_pred             EEeCCCc------ccHHHHHHHHHHHHhccc------cCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEe
Q 029920           90 VVDSSDL------RRLDDCKMELDNLLKEER------LSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVG  157 (185)
Q Consensus        90 v~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      |+|++++      .++.....+...+.....      ..+.|+++|+||+|+.......+..   .. ........++++
T Consensus        81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~-~~~~~~~~~~~~  156 (176)
T cd01881          81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VR-ELALEEGAEVVP  156 (176)
T ss_pred             EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HH-HHhcCCCCCEEE
Confidence            9999987      466666555555543322      2479999999999997653333321   00 111114567999


Q ss_pred             ecccCCCCHHHHHHHHHHH
Q 029920          158 CSAYTGEGLLEGFDWLVQD  176 (185)
Q Consensus       158 ~Sa~~~~~i~~l~~~l~~~  176 (185)
                      +||+++.|++++++++...
T Consensus       157 ~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         157 ISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             EehhhhcCHHHHHHHHHhh
Confidence            9999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01889 SelB_euk SelB subfamily

Probab=99.92  E-value=6.4e-24  Score=149.73  Aligned_cols=158  Identities=18%  Similarity=0.133  Sum_probs=104.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCC----C--c----ccccCcceEEEEEEEc--------------CeEEEEEEcCCchh
Q 029920           17 MRILMVGLDNSGKTTIVLKINGED----T--S----VISPTLGFNIKTVTYQ--------------KYTLNIWDVGGQRT   72 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~----~--~----~~~~t~~~~~~~~~~~--------------~~~~~~~D~~g~~~   72 (185)
                      ++|+++|++|+|||||+++|++..    +  .    ....|.+.....+.+.              +..+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            589999999999999999998731    1  1    1123333333333333              67999999999977


Q ss_pred             hHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHH----HHHhcCcccc-
Q 029920           73 IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTE----IAKVLNLEAM-  147 (185)
Q Consensus        73 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~----~~~~~~~~~~-  147 (185)
                      +..........+|++++|+|+.+......... +. +...   .+.|+++++||+|+........    +...+..... 
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~-~~-~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~  155 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAEC-LV-IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK  155 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHH-HH-HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            65555555677899999999987543332211 11 1111   2579999999999864433222    1221111100 


Q ss_pred             cCccceEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920          148 DKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       148 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                      .....++++++||++|.|++++++++.+.+..
T Consensus       156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             cCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence            01146789999999999999999999988753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.92  E-value=1.9e-23  Score=147.53  Aligned_cols=159  Identities=21%  Similarity=0.247  Sum_probs=105.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC--CCCccc-------------ccCcc----eEEEEEEEcCeEEEEEEcCCchhhHHHH
Q 029920           17 MRILMVGLDNSGKTTIVLKING--EDTSVI-------------SPTLG----FNIKTVTYQKYTLNIWDVGGQRTIRSYW   77 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~--~~~~~~-------------~~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~~~~   77 (185)
                      .+|+++|++|+|||||+++|.+  ..+...             ..+.+    .....+..++..+.+|||||++.+...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4899999999999999999986  333211             11122    2233456678899999999999999999


Q ss_pred             HhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHH---HHHHhcCc-ccccCccce
Q 029920           78 RNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPT---EIAKVLNL-EAMDKTRHW  153 (185)
Q Consensus        78 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~---~~~~~~~~-~~~~~~~~~  153 (185)
                      ..+++.+|++++|+|+++.. +.....++.....    .++|+++++||+|+.......   ++...+.. .......++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF  157 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence            99999999999999998732 2333333333322    368999999999996543221   22222211 001112467


Q ss_pred             EEEeecccCCCCHHHH------HHHHHHHHhhh
Q 029920          154 KIVGCSAYTGEGLLEG------FDWLVQDIASR  180 (185)
Q Consensus       154 ~~~~~Sa~~~~~i~~l------~~~l~~~~~~~  180 (185)
                      +++++||++|.|++++      +++|.+.+.+.
T Consensus       158 ~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~  190 (194)
T cd01891         158 PVLYASAKNGWASLNLEDPSEDLEPLFDTIIEH  190 (194)
T ss_pred             CEEEeehhccccccccccchhhHHHHHHHHHhc
Confidence            8999999999877443      44455554443

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.92  E-value=7.6e-24  Score=148.83  Aligned_cols=158  Identities=22%  Similarity=0.251  Sum_probs=112.7

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc---------------------ccccCcceEEEEEE--EcCeEEEEEEcCCch
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS---------------------VISPTLGFNIKTVT--YQKYTLNIWDVGGQR   71 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~---------------------~~~~t~~~~~~~~~--~~~~~~~~~D~~g~~   71 (185)
                      +.++|+++|+.++|||||+++|.+....                     ...-|.......+.  ..+..+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            5689999999999999999998643311                     11235556666777  788999999999999


Q ss_pred             hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCccc----c
Q 029920           72 TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEA----M  147 (185)
Q Consensus        72 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~----~  147 (185)
                      .+.......+..+|++++|+|+.+.-.. .....+...    ...++|+++++||+|+... ...+....+....    .
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~----~~~~~p~ivvlNK~D~~~~-~~~~~~~~~~~~l~~~~~  155 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKIL----RELGIPIIVVLNKMDLIEK-ELEEIIEEIKEKLLKEYG  155 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHH----HHTT-SEEEEEETCTSSHH-HHHHHHHHHHHHHHHHTT
T ss_pred             ceeecccceecccccceeeeeccccccc-ccccccccc----cccccceEEeeeeccchhh-hHHHHHHHHHHHhccccc
Confidence            9998888889999999999999975332 223333333    2237889999999999722 2222222111111    1


Q ss_pred             cC-ccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          148 DK-TRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       148 ~~-~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      .. ...+|++++||.+|.|+++|++.|.+.+.
T Consensus       156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  156 ENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            11 13689999999999999999999988764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.92  E-value=8.5e-24  Score=144.35  Aligned_cols=145  Identities=25%  Similarity=0.224  Sum_probs=101.8

Q ss_pred             EEcCCCCChHHHHHHHhCCCCcc---cccCcceEEEEEEEcCeEEEEEEcCCchhhHH------HHHhhh--cCCCEEEE
Q 029920           21 MVGLDNSGKTTIVLKINGEDTSV---ISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRS------YWRNYF--EQTDGLVW   89 (185)
Q Consensus        21 v~G~~~~GKttli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~~d~~i~   89 (185)
                      ++|.+|+|||||++++.+.....   ...|.......+.+++..+.+|||||+..+..      .+..++  +.+|++++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~   80 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN   80 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence            58999999999999999875321   12244445556777788999999999876543      345555  48999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (185)
                      |+|+.++++..   .++..+..    .++|+++|+||+|+.+..........+     ....+.+++++||+++.|++++
T Consensus        81 v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~iSa~~~~~~~~l  148 (158)
T cd01879          81 VVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKL-----SELLGVPVVPTSARKGEGIDEL  148 (158)
T ss_pred             EeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHH-----HHhhCCCeEEEEccCCCCHHHH
Confidence            99998864432   22333222    268999999999986543322222211     1113467999999999999999


Q ss_pred             HHHHHHHH
Q 029920          170 FDWLVQDI  177 (185)
Q Consensus       170 ~~~l~~~~  177 (185)
                      ++++.+..
T Consensus       149 ~~~l~~~~  156 (158)
T cd01879         149 KDAIAELA  156 (158)
T ss_pred             HHHHHHHh
Confidence            99988764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.92  E-value=9.9e-24  Score=142.24  Aligned_cols=150  Identities=27%  Similarity=0.372  Sum_probs=112.2

Q ss_pred             EEcCCCCChHHHHHHHhCCCC-c-ccccCcceEEEEEEEc----CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCC
Q 029920           21 MVGLDNSGKTTIVLKINGEDT-S-VISPTLGFNIKTVTYQ----KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSS   94 (185)
Q Consensus        21 v~G~~~~GKttli~~l~~~~~-~-~~~~t~~~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   94 (185)
                      ++|++|+|||||++++.+... . ...++. .........    +..+.+||+||..........+++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            579999999999999998877 2 333333 333333333    678999999999888888788899999999999999


Q ss_pred             CcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHH
Q 029920           95 DLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLV  174 (185)
Q Consensus        95 ~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (185)
                      ++.++.....++..........+.|+++++||+|+.............   ........+++++|+.++.|+++++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAE---QLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHH---HHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            988888877764444444455689999999999987654443321000   11112567899999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.92  E-value=1.8e-23  Score=163.91  Aligned_cols=147  Identities=21%  Similarity=0.344  Sum_probs=110.4

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccc----cCcceEEEEEEEcCeEEEEEEcCCchhhHHH--------HHhhh
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVIS----PTLGFNIKTVTYQKYTLNIWDVGGQRTIRSY--------WRNYF   81 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~   81 (185)
                      ...++|+++|.+|+|||||+|+|++......+    .|..+....+.+++..+.+|||||.......        ...++
T Consensus       213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~  292 (449)
T PRK05291        213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI  292 (449)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence            45689999999999999999999987653333    2444445567778899999999997654321        23467


Q ss_pred             cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeeccc
Q 029920           82 EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAY  161 (185)
Q Consensus        82 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (185)
                      ..+|++++|+|++++.+++.... +..      ..+.|+++|+||+|+.+.....            .....+++++||+
T Consensus       293 ~~aD~il~VvD~s~~~s~~~~~~-l~~------~~~~piiiV~NK~DL~~~~~~~------------~~~~~~~i~iSAk  353 (449)
T PRK05291        293 EEADLVLLVLDASEPLTEEDDEI-LEE------LKDKPVIVVLNKADLTGEIDLE------------EENGKPVIRISAK  353 (449)
T ss_pred             HhCCEEEEEecCCCCCChhHHHH-HHh------cCCCCcEEEEEhhhccccchhh------------hccCCceEEEEee
Confidence            88999999999999877664322 222      3468999999999996542221            1134578999999


Q ss_pred             CCCCHHHHHHHHHHHHhh
Q 029920          162 TGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~  179 (185)
                      +|.|+++++++|.+.+..
T Consensus       354 tg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        354 TGEGIDELREAIKELAFG  371 (449)
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999998754

>PRK00089 era GTPase Era; Reviewed

Probab=99.91  E-value=1.6e-23  Score=156.65  Aligned_cols=162  Identities=20%  Similarity=0.197  Sum_probs=111.4

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEE----EEEEcCeEEEEEEcCCchhh--------HHHHHhhhc
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIK----TVTYQKYTLNIWDVGGQRTI--------RSYWRNYFE   82 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~   82 (185)
                      +.-.|+++|++|||||||+|+|.+.+....++...++..    ....++.++.++||||....        .......+.
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~   83 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK   83 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence            345699999999999999999999887655544433222    22335579999999996432        223344678


Q ss_pred             CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC-CCHHHHHHhcCcccccCccceEEEeeccc
Q 029920           83 QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA-LTPTEIAKVLNLEAMDKTRHWKIVGCSAY  161 (185)
Q Consensus        83 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (185)
                      .+|++++|+|++++  +.....++...+..   .+.|+++|+||+|+... ....+....+..    .....+++++||+
T Consensus        84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~----~~~~~~i~~iSA~  154 (292)
T PRK00089         84 DVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSE----LMDFAEIVPISAL  154 (292)
T ss_pred             cCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHh----hCCCCeEEEecCC
Confidence            89999999999883  22222333333332   36899999999999732 222233322221    1134578999999


Q ss_pred             CCCCHHHHHHHHHHHHhhhcccCC
Q 029920          162 TGEGLLEGFDWLVQDIASRIYLLD  185 (185)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~~~~~~~  185 (185)
                      ++.|++++++++.+.+.+.-+.+|
T Consensus       155 ~~~gv~~L~~~L~~~l~~~~~~y~  178 (292)
T PRK00089        155 KGDNVDELLDVIAKYLPEGPPYYP  178 (292)
T ss_pred             CCCCHHHHHHHHHHhCCCCCCCCC
Confidence            999999999999999877655543

>cd01895 EngA2 EngA2 subfamily

Probab=99.91  E-value=5e-23  Score=142.33  Aligned_cols=155  Identities=25%  Similarity=0.246  Sum_probs=105.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEcCeEEEEEEcCCchhh----------H-HHHHhh
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQKYTLNIWDVGGQRTI----------R-SYWRNY   80 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~----------~-~~~~~~   80 (185)
                      +++|+++|++|+|||||++++.+........    +.......+..++..+.+|||||....          . .....+
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~   81 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA   81 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence            5899999999999999999999876432222    222223345567778999999996432          1 112335


Q ss_pred             hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEee
Q 029920           81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGC  158 (185)
Q Consensus        81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (185)
                      +..+|++++|+|+.++.+.... ..+...    ...+.|+++++||+|+.+.  .........+... +......+++++
T Consensus        82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~----~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  155 (174)
T cd01895          82 IERADVVLLVIDATEGITEQDL-RIAGLI----LEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRK-LPFLDYAPIVFI  155 (174)
T ss_pred             HhhcCeEEEEEeCCCCcchhHH-HHHHHH----HhcCCCEEEEEeccccCCccHHHHHHHHHHHHhh-cccccCCceEEE
Confidence            6789999999999987665442 222222    2236899999999998765  2233333333221 111134679999


Q ss_pred             cccCCCCHHHHHHHHHHH
Q 029920          159 SAYTGEGLLEGFDWLVQD  176 (185)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~  176 (185)
                      ||+++.|++++++++.+.
T Consensus       156 Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         156 SALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eccCCCCHHHHHHHHHHh
Confidence            999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.91  E-value=9.3e-23  Score=159.19  Aligned_cols=151  Identities=19%  Similarity=0.235  Sum_probs=110.4

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcc----eEEEEEEEcCeEEEEEEcCCchhhHHH--------HHhh
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLG----FNIKTVTYQKYTLNIWDVGGQRTIRSY--------WRNY   80 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~   80 (185)
                      ....++|+++|++|+|||||+|+|++......++..+    .....+.+++..+.+|||||.......        ...+
T Consensus       200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            4567899999999999999999999876544433333    334456778899999999998544321        2456


Q ss_pred             hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecc
Q 029920           81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSA  160 (185)
Q Consensus        81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (185)
                      ++.+|++++|+|++++.+++..  ++....    ..+.|+++|+||+|+... ......         ...+.+++.+||
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~----~~~~piIlV~NK~Dl~~~-~~~~~~---------~~~~~~~~~vSa  343 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF--LIIDLN----KSKKPFILVLNKIDLKIN-SLEFFV---------SSKVLNSSNLSA  343 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH--HHHHHh----hCCCCEEEEEECccCCCc-chhhhh---------hhcCCceEEEEE
Confidence            7899999999999998777654  444432    236899999999998643 111111         113456899999


Q ss_pred             cCCCCHHHHHHHHHHHHhhh
Q 029920          161 YTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~~~  180 (185)
                      ++ .|++++++.+.+.+.+.
T Consensus       344 k~-~gI~~~~~~L~~~i~~~  362 (442)
T TIGR00450       344 KQ-LKIKALVDLLTQKINAF  362 (442)
T ss_pred             ec-CCHHHHHHHHHHHHHHH
Confidence            98 69999999998887654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.91  E-value=1.3e-22  Score=144.09  Aligned_cols=158  Identities=23%  Similarity=0.325  Sum_probs=115.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEE----cCeEEEEEEcCCchhhHHHHHhhhcCC-CEEEEEEe
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTY----QKYTLNIWDVGGQRTIRSYWRNYFEQT-DGLVWVVD   92 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~-d~~i~v~d   92 (185)
                      +|+++|++|||||||+++|.+..+....++..........    .+..+.+||+||+..++..+..+++.+ +++|+|+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            6899999999999999999988775544433333333322    357899999999999999888899998 99999999


Q ss_pred             CCCc-ccHHHHHHHHHHHHhccc--cCCCeEEEEeecCCCCCCCCHHHHHHhcCc-------------------------
Q 029920           93 SSDL-RRLDDCKMELDNLLKEER--LSGASLLILANKQDINGALTPTEIAKVLNL-------------------------  144 (185)
Q Consensus        93 ~~~~-~s~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-------------------------  144 (185)
                      +.+. .++.....++..++....  ..++|+++++||+|+........+...+..                         
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~  161 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES  161 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence            9987 678888887777655322  257999999999998765443322211100                         


Q ss_pred             ---------ccccCccceEEEeecccCCC-CHHHHHHHHHH
Q 029920          145 ---------EAMDKTRHWKIVGCSAYTGE-GLLEGFDWLVQ  175 (185)
Q Consensus       145 ---------~~~~~~~~~~~~~~Sa~~~~-~i~~l~~~l~~  175 (185)
                               ........+.++++|++.+. +++.+.+||.+
T Consensus       162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~  202 (203)
T cd04105         162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE  202 (203)
T ss_pred             cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence                     00001235678999998876 69999999864

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01894 EngA1 EngA1 subfamily

Probab=99.91  E-value=4.8e-23  Score=140.35  Aligned_cols=145  Identities=20%  Similarity=0.227  Sum_probs=100.4

Q ss_pred             EEEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEcCeEEEEEEcCCchhhHH--------HHHhhhcCCCEE
Q 029920           20 LMVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQKYTLNIWDVGGQRTIRS--------YWRNYFEQTDGL   87 (185)
Q Consensus        20 ~v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~d~~   87 (185)
                      +++|.+|+|||||+++|.+.......+    |...........+..+.+|||||......        ....+++.+|++
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i   80 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI   80 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence            478999999999999999876432222    22233445566778999999999876433        344567889999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      ++|+|..++.+....  .+...+..   .+.|+++|+||+|+......   ...+...     ...+++++|++++.|++
T Consensus        81 i~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK~D~~~~~~~---~~~~~~~-----~~~~~~~~Sa~~~~gv~  147 (157)
T cd01894          81 LFVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNKVDNIKEEDE---AAEFYSL-----GFGEPIPISAEHGRGIG  147 (157)
T ss_pred             EEEEeccccCCccHH--HHHHHHHh---cCCCEEEEEECcccCChHHH---HHHHHhc-----CCCCeEEEecccCCCHH
Confidence            999999875443331  22233332   25999999999998765322   1111110     11257999999999999


Q ss_pred             HHHHHHHHHH
Q 029920          168 EGFDWLVQDI  177 (185)
Q Consensus       168 ~l~~~l~~~~  177 (185)
                      ++++++.+.+
T Consensus       148 ~l~~~l~~~~  157 (157)
T cd01894         148 DLLDAILELL  157 (157)
T ss_pred             HHHHHHHhhC
Confidence            9999998753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=7e-23  Score=160.24  Aligned_cols=159  Identities=25%  Similarity=0.277  Sum_probs=109.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCcc---cccCcceEEEEEEEcCeEEEEEEcCCchh-------hHHHHHhhhcCCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTSV---ISPTLGFNIKTVTYQKYTLNIWDVGGQRT-------IRSYWRNYFEQTD   85 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d   85 (185)
                      ...|+++|.||+|||||+|+|.+.....   ...|.......+...+..+.++|+||..+       .......+++.||
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad  238 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA  238 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence            3589999999999999999999865532   23455566667788889999999999532       1223344568899


Q ss_pred             EEEEEEeCCCc----ccHHHH---HHHHHHHHhcc-------ccCCCeEEEEeecCCCCCCCCHHHH-HHhcCcccccCc
Q 029920           86 GLVWVVDSSDL----RRLDDC---KMELDNLLKEE-------RLSGASLLILANKQDINGALTPTEI-AKVLNLEAMDKT  150 (185)
Q Consensus        86 ~~i~v~d~~~~----~s~~~~---~~~~~~~~~~~-------~~~~~~~ivv~nK~D~~~~~~~~~~-~~~~~~~~~~~~  150 (185)
                      ++++|+|+++.    +.+...   ...+..+....       ...++|+++|+||+|+.+.....+. ...+     .. 
T Consensus       239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l-----~~-  312 (500)
T PRK12296        239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL-----EA-  312 (500)
T ss_pred             EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH-----HH-
Confidence            99999999853    233333   22333322110       2346899999999998654222211 1111     11 


Q ss_pred             cceEEEeecccCCCCHHHHHHHHHHHHhhh
Q 029920          151 RHWKIVGCSAYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       151 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (185)
                      .+++++++||+++.|+++++.+|.+.+...
T Consensus       313 ~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~  342 (500)
T PRK12296        313 RGWPVFEVSAASREGLRELSFALAELVEEA  342 (500)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            357899999999999999999999987653

>PRK11058 GTPase HflX; Provisional

Probab=99.91  E-value=1.8e-22  Score=156.83  Aligned_cols=155  Identities=22%  Similarity=0.253  Sum_probs=108.5

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCe-EEEEEEcCCchhh--HHHH------Hhhhc
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKY-TLNIWDVGGQRTI--RSYW------RNYFE   82 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~~--~~~~------~~~~~   82 (185)
                      ..++|+++|.+|+|||||+|+|++....   ....|.......+.+.+. .+.+|||||....  ...+      ...+.
T Consensus       196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        196 DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            3478999999999999999999987653   234556666666666554 8899999997321  1222      23457


Q ss_pred             CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceE-EEeeccc
Q 029920           83 QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWK-IVGCSAY  161 (185)
Q Consensus        83 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~  161 (185)
                      .+|++++|+|++++.++..... +..++......++|+++|+||+|+...... .... ..       .+.+ ++.+||+
T Consensus       276 ~ADlIL~VvDaS~~~~~e~l~~-v~~iL~el~~~~~pvIiV~NKiDL~~~~~~-~~~~-~~-------~~~~~~v~ISAk  345 (426)
T PRK11058        276 QATLLLHVVDAADVRVQENIEA-VNTVLEEIDAHEIPTLLVMNKIDMLDDFEP-RIDR-DE-------ENKPIRVWLSAQ  345 (426)
T ss_pred             cCCEEEEEEeCCCccHHHHHHH-HHHHHHHhccCCCCEEEEEEcccCCCchhH-HHHH-Hh-------cCCCceEEEeCC
Confidence            8999999999999877666533 233333333347899999999998643211 1111 00       1222 5889999


Q ss_pred             CCCCHHHHHHHHHHHHhh
Q 029920          162 TGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~  179 (185)
                      +|.|+++++++|.+.+..
T Consensus       346 tG~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        346 TGAGIPLLFQALTERLSG  363 (426)
T ss_pred             CCCCHHHHHHHHHHHhhh
Confidence            999999999999998754

>PLN00023 GTP-binding protein; Provisional

Probab=99.91  E-value=6.7e-23  Score=151.88  Aligned_cols=121  Identities=22%  Similarity=0.389  Sum_probs=100.3

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEc---------------CeEEEEEEcCCchhh
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQ---------------KYTLNIWDVGGQRTI   73 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~---------------~~~~~~~D~~g~~~~   73 (185)
                      .....+||+++|+.|||||||++++.++.+. .+.+|++...  +.+.++               .+.+++|||+|++.+
T Consensus        17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf   96 (334)
T PLN00023         17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY   96 (334)
T ss_pred             CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence            3556799999999999999999999988775 4567777543  344432               367999999999999


Q ss_pred             HHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccc-----------cCCCeEEEEeecCCCCCC
Q 029920           74 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEER-----------LSGASLLILANKQDINGA  132 (185)
Q Consensus        74 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~~~ivv~nK~D~~~~  132 (185)
                      ..++..+++++|++|+|||++++++|+.+..|+..+.....           ..++|+++|+||+|+...
T Consensus        97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~  166 (334)
T PLN00023         97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK  166 (334)
T ss_pred             hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence            99999999999999999999999999999999888866421           125899999999999653

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.90  E-value=8.6e-23  Score=144.31  Aligned_cols=161  Identities=19%  Similarity=0.208  Sum_probs=106.8

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCC-CcccccCcceEEEEEEE-cCeEEEEEEcCCc----------hhhHHHHHh
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGED-TSVISPTLGFNIKTVTY-QKYTLNIWDVGGQ----------RTIRSYWRN   79 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~-~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~----------~~~~~~~~~   79 (185)
                      .....++|+++|++|+|||||+++|++.. .....++.+.+...-.+ -+..+.+|||||.          +.+......
T Consensus        20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~   99 (196)
T PRK00454         20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE   99 (196)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence            35677999999999999999999999876 44555555543322111 1468999999994          333344444


Q ss_pred             hhcC---CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEE
Q 029920           80 YFEQ---TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIV  156 (185)
Q Consensus        80 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (185)
                      +++.   .+++++|+|..++.+...  ..+...+..   .+.|+++++||+|+.+............. .+.. ...+++
T Consensus       100 ~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~-~l~~-~~~~~~  172 (196)
T PRK00454        100 YLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRK-ALKF-GDDEVI  172 (196)
T ss_pred             HHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHH-HHHh-cCCceE
Confidence            5544   467888999887544332  222233332   36899999999998654333322222211 1111 246789


Q ss_pred             eecccCCCCHHHHHHHHHHHHhh
Q 029920          157 GCSAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       157 ~~Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                      ++||+++.|++++++.|.+.+.+
T Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        173 LFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             EEEcCCCCCHHHHHHHHHHHhcC
Confidence            99999999999999999988764

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=1.7e-22  Score=155.32  Aligned_cols=164  Identities=19%  Similarity=0.178  Sum_probs=111.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcC-eEEEEEEcCCchh-------hHHHHHhhhcCCCE
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQK-YTLNIWDVGGQRT-------IRSYWRNYFEQTDG   86 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~-------~~~~~~~~~~~~d~   86 (185)
                      .|+++|.||+|||||+|+|++.+..   ....|.......+...+ ..+.++||||..+       .......+++.+|+
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv  240 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV  240 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence            7999999999999999999986642   12234445555566654 5699999999643       22233446789999


Q ss_pred             EEEEEeCC---CcccHHHHHHHHHHHHhcc-ccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccC
Q 029920           87 LVWVVDSS---DLRRLDDCKMELDNLLKEE-RLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYT  162 (185)
Q Consensus        87 ~i~v~d~~---~~~s~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (185)
                      +++|+|++   +.+.++....++..+.... ...+.|+++|+||+|+.......+....+... ..  ...+++++||++
T Consensus       241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~-~~--~~~~Vi~ISA~t  317 (390)
T PRK12298        241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA-LG--WEGPVYLISAAS  317 (390)
T ss_pred             EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH-hC--CCCCEEEEECCC
Confidence            99999998   3445555555555544331 12368999999999986543332222222111 00  123589999999


Q ss_pred             CCCHHHHHHHHHHHHhhhcccC
Q 029920          163 GEGLLEGFDWLVQDIASRIYLL  184 (185)
Q Consensus       163 ~~~i~~l~~~l~~~~~~~~~~~  184 (185)
                      +.|+++++++|.+.+.+.-+++
T Consensus       318 g~GIdeLl~~I~~~L~~~~~~~  339 (390)
T PRK12298        318 GLGVKELCWDLMTFIEENPREE  339 (390)
T ss_pred             CcCHHHHHHHHHHHhhhCcccC
Confidence            9999999999999987765544

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=2.9e-22  Score=154.86  Aligned_cols=155  Identities=23%  Similarity=0.243  Sum_probs=107.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEc-CeEEEEEEcCCchh-------hHHHHHhhhcCCCE
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQ-KYTLNIWDVGGQRT-------IRSYWRNYFEQTDG   86 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~-------~~~~~~~~~~~~d~   86 (185)
                      .|+++|.||+|||||+++|++.+..   ....|.......+.+. +..+.++|+||..+       +...+..+++.+++
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l  239 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV  239 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence            8999999999999999999987643   1223444555556665 68999999999632       22333445677999


Q ss_pred             EEEEEeCCCc---ccHHHHHHHHHHHHhcc-ccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccC
Q 029920           87 LVWVVDSSDL---RRLDDCKMELDNLLKEE-RLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYT  162 (185)
Q Consensus        87 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (185)
                      +++|+|+++.   +.++....+...+..+. ...++|+++|+||+|+...  ...+.. +...     ...+++++||++
T Consensus       240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~-l~~~-----l~~~i~~iSA~t  311 (424)
T PRK12297        240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEE-FKEK-----LGPKVFPISALT  311 (424)
T ss_pred             EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHH-HHHH-----hCCcEEEEeCCC
Confidence            9999999864   45555544444443332 2247899999999998432  122211 1111     125789999999


Q ss_pred             CCCHHHHHHHHHHHHhhh
Q 029920          163 GEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       163 ~~~i~~l~~~l~~~~~~~  180 (185)
                      +.|+++++++|.+.+.+.
T Consensus       312 geGI~eL~~~L~~~l~~~  329 (424)
T PRK12297        312 GQGLDELLYAVAELLEET  329 (424)
T ss_pred             CCCHHHHHHHHHHHHHhC
Confidence            999999999999887653

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.90  E-value=4.1e-23  Score=144.05  Aligned_cols=152  Identities=17%  Similarity=0.159  Sum_probs=96.9

Q ss_pred             hhccCceeEEEEEcCCCCChHHHHHHHhCCC-CcccccCcceEEE--EEEEcCeEEEEEEcCCch----------hhHHH
Q 029920           10 IKKKEKEMRILMVGLDNSGKTTIVLKINGED-TSVISPTLGFNIK--TVTYQKYTLNIWDVGGQR----------TIRSY   76 (185)
Q Consensus        10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~-~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~~----------~~~~~   76 (185)
                      +.++.+.++|+++|++|+|||||++++++.. ...++++.+.+..  .+..+ ..+.+|||||..          .+...
T Consensus        12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~   90 (179)
T TIGR03598        12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKL   90 (179)
T ss_pred             hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHH
Confidence            4456788999999999999999999999886 3445555543332  23333 379999999942          23333


Q ss_pred             HHhhhc---CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccce
Q 029920           77 WRNYFE---QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHW  153 (185)
Q Consensus        77 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  153 (185)
                      ...+++   .+|++++|+|++++-+.... .. ...+..   .+.|+++++||+|+............+....-.....+
T Consensus        91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~-~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~  165 (179)
T TIGR03598        91 IEEYLEKRENLKGVVLLMDIRHPLKELDL-EM-LEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDP  165 (179)
T ss_pred             HHHHHHhChhhcEEEEEecCCCCCCHHHH-HH-HHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCC
Confidence            344554   45899999999875444432 22 222222   36899999999998654322222221111111111245


Q ss_pred             EEEeecccCCCCHH
Q 029920          154 KIVGCSAYTGEGLL  167 (185)
Q Consensus       154 ~~~~~Sa~~~~~i~  167 (185)
                      +++++||++|+|++
T Consensus       166 ~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       166 SVQLFSSLKKTGID  179 (179)
T ss_pred             ceEEEECCCCCCCC
Confidence            79999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.90  E-value=1.9e-22  Score=144.95  Aligned_cols=164  Identities=24%  Similarity=0.351  Sum_probs=118.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcceEEEE--EEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLGFNIKT--VTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      .+||+++|++|||||||+++|.+..+.. +.++.+.....  ....  ...+.+|||+|+++++..+..|..+++++++|
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            4899999999999999999999998874 44554432222  2222  47799999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHH-HHh----------cCcccccCccceEEEeec
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEI-AKV----------LNLEAMDKTRHWKIVGCS  159 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~~~~S  159 (185)
                      +|..+..++......|...+......+.|+++++||+|+......... ...          .............++++|
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  164 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS  164 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence            999996666666555555444433346999999999999765332211 110          010011111133389999


Q ss_pred             cc--CCCCHHHHHHHHHHHHhh
Q 029920          160 AY--TGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       160 a~--~~~~i~~l~~~l~~~~~~  179 (185)
                      ++  .+.++.+++..+...+.+
T Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~  186 (219)
T COG1100         165 AKSLTGPNVNELFKELLRKLLE  186 (219)
T ss_pred             cccCCCcCHHHHHHHHHHHHHH
Confidence            99  999999999999988754

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=2.8e-22  Score=157.59  Aligned_cols=160  Identities=21%  Similarity=0.240  Sum_probs=111.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEE----EEEEEcCeEEEEEEcCCchhhH-----------HHHH
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNI----KTVTYQKYTLNIWDVGGQRTIR-----------SYWR   78 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~D~~g~~~~~-----------~~~~   78 (185)
                      ...++|+++|.+|+|||||+|+|++......++..+.+.    ..+..++..+.++||||.....           ....
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~  250 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL  250 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence            357999999999999999999999876544444444333    2345677889999999953321           1123


Q ss_pred             hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEee
Q 029920           79 NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGC  158 (185)
Q Consensus        79 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (185)
                      .+++.+|++++|+|++++.+..... .+... .   ..+.|+++++||+|+.+.....+....+.. .+......+++++
T Consensus       251 ~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~-~---~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~-~l~~~~~~~i~~~  324 (435)
T PRK00093        251 KAIERADVVLLVIDATEGITEQDLR-IAGLA-L---EAGRALVIVVNKWDLVDEKTMEEFKKELRR-RLPFLDYAPIVFI  324 (435)
T ss_pred             HHHHHCCEEEEEEeCCCCCCHHHHH-HHHHH-H---HcCCcEEEEEECccCCCHHHHHHHHHHHHH-hcccccCCCEEEE
Confidence            4678899999999999876655432 22222 2   236899999999998754333344333322 1222256789999


Q ss_pred             cccCCCCHHHHHHHHHHHHhh
Q 029920          159 SAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                      ||++|.|++++++.+.+...+
T Consensus       325 SA~~~~gv~~l~~~i~~~~~~  345 (435)
T PRK00093        325 SALTGQGVDKLLEAIDEAYEN  345 (435)
T ss_pred             eCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999998876543

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.90  E-value=1.3e-22  Score=138.63  Aligned_cols=142  Identities=19%  Similarity=0.167  Sum_probs=95.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCch----hhHHHHHhhhcCCCEEEEEEeC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQR----TIRSYWRNYFEQTDGLVWVVDS   93 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~d~~i~v~d~   93 (185)
                      +|+++|++|+|||||+|+|.+.... ..++.+     +.+...  .+|||||..    .+.......+..+|++++|+|+
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~-~~~~~~-----v~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~   74 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTL-ARKTQA-----VEFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA   74 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcc-CccceE-----EEECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence            7999999999999999999876421 112221     222222  379999962    2222233447899999999999


Q ss_pred             CCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHH
Q 029920           94 SDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL  173 (185)
Q Consensus        94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (185)
                      ++.+++..  .++..+     ..+.|+++++||+|+... ......+......    ...|++++||++|.|++++++.+
T Consensus        75 ~~~~s~~~--~~~~~~-----~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~----~~~p~~~~Sa~~g~gi~~l~~~l  142 (158)
T PRK15467         75 NDPESRLP--AGLLDI-----GVSKRQIAVISKTDMPDA-DVAATRKLLLETG----FEEPIFELNSHDPQSVQQLVDYL  142 (158)
T ss_pred             CCcccccC--HHHHhc-----cCCCCeEEEEEccccCcc-cHHHHHHHHHHcC----CCCCEEEEECCCccCHHHHHHHH
Confidence            98766532  233322     136789999999998653 3333333222111    22589999999999999999999


Q ss_pred             HHHHhh
Q 029920          174 VQDIAS  179 (185)
Q Consensus       174 ~~~~~~  179 (185)
                      .+.+.+
T Consensus       143 ~~~~~~  148 (158)
T PRK15467        143 ASLTKQ  148 (158)
T ss_pred             HHhchh
Confidence            887754

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.90  E-value=1.4e-22  Score=143.91  Aligned_cols=158  Identities=16%  Similarity=0.143  Sum_probs=101.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc----cc--ccCcceEEEEEEEc---------------------------C----
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS----VI--SPTLGFNIKTVTYQ---------------------------K----   59 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~----~~--~~t~~~~~~~~~~~---------------------------~----   59 (185)
                      ++|+++|+.|+|||||+.+|.+....    ..  ..+.......+.+.                           +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            47999999999999999999765221    11  11111111111110                           2    


Q ss_pred             --eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHH
Q 029920           60 --YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTE  137 (185)
Q Consensus        60 --~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~  137 (185)
                        ..+.+|||||++.+...+...+..+|++++|+|++++.........+..+...   ...|+++++||+|+........
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~  157 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALE  157 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHH
Confidence              67999999999998888888888999999999999742111122222222111   1257999999999965322222


Q ss_pred             HHHhcCcccccC--ccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          138 IAKVLNLEAMDK--TRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       138 ~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      ..+.+.. .+..  ...++++++||++|.|++++++++.+.+.
T Consensus       158 ~~~~i~~-~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~  199 (203)
T cd01888         158 NYEQIKK-FVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP  199 (203)
T ss_pred             HHHHHHH-HHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence            1121111 0110  13567999999999999999999988664

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.90  E-value=1.2e-22  Score=154.43  Aligned_cols=148  Identities=23%  Similarity=0.291  Sum_probs=111.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcccccCcceE----EEEEEEcCeEEEEEEcCCchh---------hHHHHHhhhcC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFN----IKTVTYQKYTLNIWDVGGQRT---------IRSYWRNYFEQ   83 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~   83 (185)
                      +.|+++|.||+|||||.|+|++........+.|++    +...++.+..|.++||+|.+.         +..+....+..
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e   83 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE   83 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence            67999999999999999999999998887766655    445678888999999999542         33455667789


Q ss_pred             CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCC
Q 029920           84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTG  163 (185)
Q Consensus        84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (185)
                      +|+++||+|....-+-  ..+.+..++..   .++|+++|+||+|....  .....+.+..      ..-.++++||.+|
T Consensus        84 ADvilfvVD~~~Git~--~D~~ia~~Lr~---~~kpviLvvNK~D~~~~--e~~~~efysl------G~g~~~~ISA~Hg  150 (444)
T COG1160          84 ADVILFVVDGREGITP--ADEEIAKILRR---SKKPVILVVNKIDNLKA--EELAYEFYSL------GFGEPVPISAEHG  150 (444)
T ss_pred             CCEEEEEEeCCCCCCH--HHHHHHHHHHh---cCCCEEEEEEcccCchh--hhhHHHHHhc------CCCCceEeehhhc
Confidence            9999999999863222  22333444442   26999999999997632  2223333332      1224799999999


Q ss_pred             CCHHHHHHHHHHHH
Q 029920          164 EGLLEGFDWLVQDI  177 (185)
Q Consensus       164 ~~i~~l~~~l~~~~  177 (185)
                      .|+.+|.+++...+
T Consensus       151 ~Gi~dLld~v~~~l  164 (444)
T COG1160         151 RGIGDLLDAVLELL  164 (444)
T ss_pred             cCHHHHHHHHHhhc
Confidence            99999999999986

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.89  E-value=8e-24  Score=145.93  Aligned_cols=164  Identities=20%  Similarity=0.295  Sum_probs=122.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEE---cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTY---QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      ..+|++|+|+.++|||+|+-.+..+.++ .+.||.-.++. .+.+   ..+.+.+|||+|++++..++...+..+|++++
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~   82 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL   82 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence            4689999999999999999999888886 56676652222 2334   34789999999999999988888999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHH-HHH--------HhcCcccccCccceEEEeecc
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPT-EIA--------KVLNLEAMDKTRHWKIVGCSA  160 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~Sa  160 (185)
                      ||++.++.||++....|..-+++ .+++.|+|+|++|.|+.++.... .+.        ...+...........+++|||
T Consensus        83 cfsv~~p~S~~nv~~kW~pEi~~-~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa  161 (198)
T KOG0393|consen   83 CFSVVSPESFENVKSKWIPEIKH-HCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA  161 (198)
T ss_pred             EEEcCChhhHHHHHhhhhHHHHh-hCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence            99999999999987655544444 34789999999999997432111 111        111111222223367999999


Q ss_pred             cCCCCHHHHHHHHHHHHhh
Q 029920          161 YTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~~  179 (185)
                      ++..|+.++|+..+.....
T Consensus       162 ~tq~~v~~vF~~a~~~~l~  180 (198)
T KOG0393|consen  162 LTQKGVKEVFDEAIRAALR  180 (198)
T ss_pred             hhhCCcHHHHHHHHHHHhc
Confidence            9999999999998887643

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.89  E-value=2.5e-22  Score=164.82  Aligned_cols=158  Identities=20%  Similarity=0.212  Sum_probs=112.2

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCccc---ccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVI---SPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      ..+++.|+++|+.++|||||+++|.+..+...   ..|.......+.+++..+.+|||||++.|..++..++..+|++++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL  366 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL  366 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence            45778999999999999999999987665321   122333344566778899999999999999999989999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcc-cccC--ccceEEEeecccCCCCH
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLE-AMDK--TRHWKIVGCSAYTGEGL  166 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~Sa~~~~~i  166 (185)
                      |+|+++... ......+...    ...++|+|+++||+|+... ....+...+... ....  ...++++++||++|.|+
T Consensus       367 VVdAddGv~-~qT~e~i~~a----~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI  440 (787)
T PRK05306        367 VVAADDGVM-PQTIEAINHA----KAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI  440 (787)
T ss_pred             EEECCCCCC-HhHHHHHHHH----HhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence            999987422 1112222222    2347999999999999654 223333222111 1110  12478999999999999


Q ss_pred             HHHHHHHHHH
Q 029920          167 LEGFDWLVQD  176 (185)
Q Consensus       167 ~~l~~~l~~~  176 (185)
                      ++++++|...
T Consensus       441 ~eLle~I~~~  450 (787)
T PRK05306        441 DELLEAILLQ  450 (787)
T ss_pred             hHHHHhhhhh
Confidence            9999998753

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.89  E-value=3.2e-22  Score=160.52  Aligned_cols=156  Identities=21%  Similarity=0.212  Sum_probs=110.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccc---cCcceEEEEEEEcCe-EEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVIS---PTLGFNIKTVTYQKY-TLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~---~t~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      .++++|+++|++|+|||||+++|.+..+....   .|.......+.+++. .+.+|||||++.|..++..++..+|++++
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            45689999999999999999999987664321   233333444555444 89999999999999999988999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccc---cCccceEEEeecccCCCCH
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAM---DKTRHWKIVGCSAYTGEGL  166 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Sa~~~~~i  166 (185)
                      |+|+++... ......+...    ...++|+++++||+|+... ..++....+....+   ......+++++||++|.|+
T Consensus       165 VVda~dgv~-~qT~e~i~~~----~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI  238 (587)
T TIGR00487       165 VVAADDGVM-PQTIEAISHA----KAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI  238 (587)
T ss_pred             EEECCCCCC-HhHHHHHHHH----HHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence            999987432 2222222222    2237899999999998653 33333333321111   0112357999999999999


Q ss_pred             HHHHHHHHH
Q 029920          167 LEGFDWLVQ  175 (185)
Q Consensus       167 ~~l~~~l~~  175 (185)
                      +++++++..
T Consensus       239 ~eLl~~I~~  247 (587)
T TIGR00487       239 DELLDMILL  247 (587)
T ss_pred             HHHHHhhhh
Confidence            999999865

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd04163 Era Era subfamily

Probab=99.89  E-value=6.1e-22  Score=135.90  Aligned_cols=153  Identities=22%  Similarity=0.208  Sum_probs=103.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcce----EEEEEEEcCeEEEEEEcCCchhhH--------HHHHhhhc
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGF----NIKTVTYQKYTLNIWDVGGQRTIR--------SYWRNYFE   82 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~----~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~   82 (185)
                      ...+|+++|++|+|||||++++.+.......+....    ........+..+.+|||||.....        ......+.
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            357899999999999999999998876433322221    122233455789999999965332        23344578


Q ss_pred             CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC-CCCHHHHHHhcCcccccCccceEEEeeccc
Q 029920           83 QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING-ALTPTEIAKVLNLEAMDKTRHWKIVGCSAY  161 (185)
Q Consensus        83 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (185)
                      .+|++++|+|++++.+  ....++...+..   .+.|+++++||+|+.. .....+....+...    ....+++++|++
T Consensus        82 ~~d~i~~v~d~~~~~~--~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~  152 (168)
T cd04163          82 DVDLVLFVVDASEPIG--EGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKEL----GPFAEIFPISAL  152 (168)
T ss_pred             hCCEEEEEEECCCccC--chHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhc----cCCCceEEEEec
Confidence            8999999999998621  222222222222   2689999999999873 33333333333221    124578999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 029920          162 TGEGLLEGFDWLVQD  176 (185)
Q Consensus       162 ~~~~i~~l~~~l~~~  176 (185)
                      ++.|+++++++|.+.
T Consensus       153 ~~~~~~~l~~~l~~~  167 (168)
T cd04163         153 KGENVDELLEEIVKY  167 (168)
T ss_pred             cCCChHHHHHHHHhh
Confidence            999999999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.89  E-value=7.3e-22  Score=155.03  Aligned_cols=149  Identities=23%  Similarity=0.329  Sum_probs=107.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcccccCc----ceEEEEEEEcCeEEEEEEcCCc--------hhhHHHHHhhhcCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVISPTL----GFNIKTVTYQKYTLNIWDVGGQ--------RTIRSYWRNYFEQTD   85 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~~~~~~~d   85 (185)
                      +|+++|.+|+|||||+|+|.+.......+..    ......+.+++..+.+|||||.        +.+......+++.+|
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad   80 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD   80 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence            5899999999999999999998764443333    3445566778899999999995        445556677789999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           86 GLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      ++++|+|+.+..+...  ..+..+++.   .++|+++|+||+|+......  ..+....      ...+++++||++|.|
T Consensus        81 ~vl~vvD~~~~~~~~d--~~i~~~l~~---~~~piilVvNK~D~~~~~~~--~~~~~~l------g~~~~~~vSa~~g~g  147 (429)
T TIGR03594        81 VILFVVDGREGLTPED--EEIAKWLRK---SGKPVILVANKIDGKKEDAV--AAEFYSL------GFGEPIPISAEHGRG  147 (429)
T ss_pred             EEEEEEeCCCCCCHHH--HHHHHHHHH---hCCCEEEEEECccCCccccc--HHHHHhc------CCCCeEEEeCCcCCC
Confidence            9999999987533332  222333332   26899999999998654321  1111110      222589999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 029920          166 LLEGFDWLVQDIAS  179 (185)
Q Consensus       166 i~~l~~~l~~~~~~  179 (185)
                      ++++++++.+.+.+
T Consensus       148 v~~ll~~i~~~l~~  161 (429)
T TIGR03594       148 IGDLLDAILELLPE  161 (429)
T ss_pred             hHHHHHHHHHhcCc
Confidence            99999999988743

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.89  E-value=6.7e-22  Score=161.05  Aligned_cols=159  Identities=16%  Similarity=0.167  Sum_probs=110.4

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCccc---ccC--cceEEEEEEE--cCeEEEEEEcCCchhhHHHHHhhhcCCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVI---SPT--LGFNIKTVTY--QKYTLNIWDVGGQRTIRSYWRNYFEQTD   85 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~---~~t--~~~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d   85 (185)
                      ..+.+.|+++|+.++|||||+++|.+..+...   ..|  .+.....+..  .+..+.+|||||++.|..++..++..+|
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD  320 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD  320 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence            34668999999999999999999988766421   122  2222222222  3589999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcc-cccC--ccceEEEeecccC
Q 029920           86 GLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLE-AMDK--TRHWKIVGCSAYT  162 (185)
Q Consensus        86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~Sa~~  162 (185)
                      ++++|+|+++....+. ...+..+    ...++|+|+++||+|+.... ..++...+... ....  ...++++++||++
T Consensus       321 iaILVVDA~dGv~~QT-~E~I~~~----k~~~iPiIVViNKiDl~~~~-~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt  394 (742)
T CHL00189        321 IAILIIAADDGVKPQT-IEAINYI----QAANVPIIVAINKIDKANAN-TERIKQQLAKYNLIPEKWGGDTPMIPISASQ  394 (742)
T ss_pred             EEEEEEECcCCCChhh-HHHHHHH----HhcCceEEEEEECCCccccC-HHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence            9999999987432221 1222222    22378999999999987542 23333322211 0010  1247899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 029920          163 GEGLLEGFDWLVQDI  177 (185)
Q Consensus       163 ~~~i~~l~~~l~~~~  177 (185)
                      |.|++++++++....
T Consensus       395 G~GIdeLle~I~~l~  409 (742)
T CHL00189        395 GTNIDKLLETILLLA  409 (742)
T ss_pred             CCCHHHHHHhhhhhh
Confidence            999999999987754

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=6.2e-22  Score=155.64  Aligned_cols=146  Identities=21%  Similarity=0.286  Sum_probs=104.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEcCeEEEEEEcCCchh--------hHHHHHhhhcCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQKYTLNIWDVGGQRT--------IRSYWRNYFEQT   84 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~~   84 (185)
                      ++|+++|.+|+|||||+|+|.+........    |.......+.+++..+.+|||||...        +......++..+
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a   81 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA   81 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence            589999999999999999999887543333    33344556777889999999999876        334455677899


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccce-EEEeecccCC
Q 029920           85 DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHW-KIVGCSAYTG  163 (185)
Q Consensus        85 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  163 (185)
                      |++++|+|+.++.+...  ..+..++..   .+.|+++|+||+|+.+.  .....+...       .++ .++++||++|
T Consensus        82 d~il~vvd~~~~~~~~~--~~~~~~l~~---~~~piilv~NK~D~~~~--~~~~~~~~~-------lg~~~~~~iSa~~g  147 (435)
T PRK00093         82 DVILFVVDGRAGLTPAD--EEIAKILRK---SNKPVILVVNKVDGPDE--EADAYEFYS-------LGLGEPYPISAEHG  147 (435)
T ss_pred             CEEEEEEECCCCCCHHH--HHHHHHHHH---cCCcEEEEEECccCccc--hhhHHHHHh-------cCCCCCEEEEeeCC
Confidence            99999999987533322  122333332   26899999999997542  122222211       122 3789999999


Q ss_pred             CCHHHHHHHHHHH
Q 029920          164 EGLLEGFDWLVQD  176 (185)
Q Consensus       164 ~~i~~l~~~l~~~  176 (185)
                      .|++++++.+.+.
T Consensus       148 ~gv~~l~~~I~~~  160 (435)
T PRK00093        148 RGIGDLLDAILEE  160 (435)
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999999873

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.89  E-value=9.2e-22  Score=162.20  Aligned_cols=160  Identities=19%  Similarity=0.213  Sum_probs=111.8

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEcCeEEEEEEcCCchh----------hHHH-HH
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQKYTLNIWDVGGQRT----------IRSY-WR   78 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~-~~   78 (185)
                      +..++|+++|.+|+|||||+|+|.+.......+    |.......+.+++..+.+|||||..+          +... ..
T Consensus       448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~  527 (712)
T PRK09518        448 SGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ  527 (712)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence            345899999999999999999999987533222    33333445667888899999999532          1111 23


Q ss_pred             hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEee
Q 029920           79 NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGC  158 (185)
Q Consensus        79 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (185)
                      .+++.+|++++|+|+++..+.+... .+..+..    .++|+++|+||+|+.+..........+.. .+......+++++
T Consensus       528 ~~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~-~l~~~~~~~ii~i  601 (712)
T PRK09518        528 AAIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKT-EFDRVTWARRVNL  601 (712)
T ss_pred             HHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHH-hccCCCCCCEEEE
Confidence            4568899999999999887776543 2333322    37999999999999764333333222221 1112244578999


Q ss_pred             cccCCCCHHHHHHHHHHHHhh
Q 029920          159 SAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                      ||++|.|++++++.+.+...+
T Consensus       602 SAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        602 SAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             ECCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999988765

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.89  E-value=1.6e-22  Score=131.97  Aligned_cols=111  Identities=23%  Similarity=0.442  Sum_probs=80.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCc---ccc--cCcceEEEEEEE--cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTS---VIS--PTLGFNIKTVTY--QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~---~~~--~t~~~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      ||+|+|++|||||||+++|++....   ...  ............  ....+.+||++|++.+...+...+..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999988776   112  222233223333  334689999999988887777778999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhcc-ccCCCeEEEEeecCC
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEE-RLSGASLLILANKQD  128 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D  128 (185)
                      ||+++++++..+..++..+.... ...+.|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            99999999998755533332221 234699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.88  E-value=2.3e-21  Score=159.86  Aligned_cols=152  Identities=22%  Similarity=0.273  Sum_probs=107.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEE----EEEcCeEEEEEEcCCchh--------hHHHHHhhhc
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT----VTYQKYTLNIWDVGGQRT--------IRSYWRNYFE   82 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~   82 (185)
                      ...+|+++|.+|+|||||+|+|++.......++.+++...    ..+++..+.+|||||...        +......+++
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~  353 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS  353 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence            3478999999999999999999998776666666655443    345678999999999653        3445566788


Q ss_pred             CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccC
Q 029920           83 QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYT  162 (185)
Q Consensus        83 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (185)
                      .+|++++|+|+++.-.  .....+...+..   .++|+++|+||+|+.....  .....+...     .. .++++||++
T Consensus       354 ~aD~iL~VvDa~~~~~--~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~~--~~~~~~~lg-----~~-~~~~iSA~~  420 (712)
T PRK09518        354 LADAVVFVVDGQVGLT--STDERIVRMLRR---AGKPVVLAVNKIDDQASEY--DAAEFWKLG-----LG-EPYPISAMH  420 (712)
T ss_pred             hCCEEEEEEECCCCCC--HHHHHHHHHHHh---cCCCEEEEEECcccccchh--hHHHHHHcC-----CC-CeEEEECCC
Confidence            9999999999986322  222223333332   4799999999999854321  112211111     11 247899999


Q ss_pred             CCCHHHHHHHHHHHHhh
Q 029920          163 GEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       163 ~~~i~~l~~~l~~~~~~  179 (185)
                      |.|++++++++.+.+.+
T Consensus       421 g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        421 GRGVGDLLDEALDSLKV  437 (712)
T ss_pred             CCCchHHHHHHHHhccc
Confidence            99999999999988754

>PTZ00099 rab6; Provisional

Probab=99.88  E-value=4.1e-21  Score=133.33  Aligned_cols=131  Identities=18%  Similarity=0.298  Sum_probs=101.9

Q ss_pred             cccccCcceEEE--EEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCC
Q 029920           42 SVISPTLGFNIK--TVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSG  117 (185)
Q Consensus        42 ~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  117 (185)
                      ..+.+|.+....  .+..+  .+.+.+|||||++.+...+..+++++|++|+|||++++.+|+.+..|+..+.... .++
T Consensus         7 ~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~   85 (176)
T PTZ00099          7 NNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKD   85 (176)
T ss_pred             CCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCC
Confidence            356677774443  34443  4789999999999999999999999999999999999999999999988887653 356


Q ss_pred             CeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920          118 ASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       118 ~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                      .|+++|+||+|+.+.  ...++.....      ....+.++++||++|.|++++|++|.+.+.+
T Consensus        86 ~piilVgNK~DL~~~~~v~~~e~~~~~------~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099         86 VIIALVGNKTDLGDLRKVTYEEGMQKA------QEYNTMFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             CeEEEEEECcccccccCCCHHHHHHHH------HHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            899999999998542  2222222211      1135578999999999999999999998855

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.88  E-value=4.1e-21  Score=154.81  Aligned_cols=156  Identities=19%  Similarity=0.230  Sum_probs=108.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCC--------ccccc------CcceEEE----EEEE---c--CeEEEEEEcCCch
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDT--------SVISP------TLGFNIK----TVTY---Q--KYTLNIWDVGGQR   71 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~--------~~~~~------t~~~~~~----~~~~---~--~~~~~~~D~~g~~   71 (185)
                      +..+++++|+.++|||||+++|.....        ..+.+      +.+.+..    .+.+   +  .+.+++|||||+.
T Consensus         2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~   81 (595)
T TIGR01393         2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV   81 (595)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence            346899999999999999999976421        11111      1232222    2333   2  2789999999999


Q ss_pred             hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCcc
Q 029920           72 TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTR  151 (185)
Q Consensus        72 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  151 (185)
                      .+...+..++..+|++++|+|+++..+.+....+.. ...    .+.|+++|+||+|+.... ..+....+... + ...
T Consensus        82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~-~~~----~~ipiIiViNKiDl~~~~-~~~~~~el~~~-l-g~~  153 (595)
T TIGR01393        82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYL-ALE----NDLEIIPVINKIDLPSAD-PERVKKEIEEV-I-GLD  153 (595)
T ss_pred             HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHH-HHH----cCCCEEEEEECcCCCccC-HHHHHHHHHHH-h-CCC
Confidence            999999999999999999999998766655444332 222    268999999999986542 22222111110 0 001


Q ss_pred             ceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          152 HWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      ...++++||++|.|+++++++|.+.+.
T Consensus       154 ~~~vi~vSAktG~GI~~Lle~I~~~lp  180 (595)
T TIGR01393       154 ASEAILASAKTGIGIEEILEAIVKRVP  180 (595)
T ss_pred             cceEEEeeccCCCCHHHHHHHHHHhCC
Confidence            235899999999999999999998764

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.88  E-value=1.3e-21  Score=148.75  Aligned_cols=158  Identities=23%  Similarity=0.297  Sum_probs=118.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEE----EEEcCeEEEEEEcCCchhhHH-----------HHHh
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT----VTYQKYTLNIWDVGGQRTIRS-----------YWRN   79 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~-----------~~~~   79 (185)
                      ..++|+++|.||+|||||+|+|.+......++..+++...    +++++..+.++||+|......           ....
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~  256 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK  256 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence            4699999999999999999999999998777766666554    566789999999999543222           2334


Q ss_pred             hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEe
Q 029920           80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVG  157 (185)
Q Consensus        80 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      .+..+|++++|+|++.+-+-+.  ..+..+.   ...+.++++++||+|+.+.  ...++....+.. .+.+....|++.
T Consensus       257 aI~~a~vvllviDa~~~~~~qD--~~ia~~i---~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~-~l~~l~~a~i~~  330 (444)
T COG1160         257 AIERADVVLLVIDATEGISEQD--LRIAGLI---EEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRR-KLPFLDFAPIVF  330 (444)
T ss_pred             HHhhcCEEEEEEECCCCchHHH--HHHHHHH---HHcCCCeEEEEEccccCCchhhHHHHHHHHHHH-HhccccCCeEEE
Confidence            5678999999999998654443  2223333   3347999999999998775  333444444433 344446778999


Q ss_pred             ecccCCCCHHHHHHHHHHHHh
Q 029920          158 CSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       158 ~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      +||++|.++.++++.+.+...
T Consensus       331 iSA~~~~~i~~l~~~i~~~~~  351 (444)
T COG1160         331 ISALTGQGLDKLFEAIKEIYE  351 (444)
T ss_pred             EEecCCCChHHHHHHHHHHHH
Confidence            999999999999999877654

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.88  E-value=1.4e-21  Score=157.36  Aligned_cols=158  Identities=22%  Similarity=0.167  Sum_probs=109.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc----cc--ccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS----VI--SPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~----~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      +.|+++|++++|||||+++|++....    ..  ..|.......+..++..+.+||+||++.+......++.++|++++|
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV   80 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV   80 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence            46899999999999999999974421    11  2344445556777778999999999999988888889999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEeecCCCCCCCCHHHHHHhcCcc--cccCccceEEEeecccCCCCHH
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEERLSGAS-LLILANKQDINGALTPTEIAKVLNLE--AMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      +|+++... ....+.+. ++..   .++| +++++||+|+.+..............  ......+.+++++||++|.|++
T Consensus        81 VDa~~G~~-~qT~ehl~-il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~  155 (581)
T TIGR00475        81 VDADEGVM-TQTGEHLA-VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIG  155 (581)
T ss_pred             EECCCCCc-HHHHHHHH-HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCch
Confidence            99997321 11222222 2222   2566 99999999997643222222111110  0111125789999999999999


Q ss_pred             HHHHHHHHHHhh
Q 029920          168 EGFDWLVQDIAS  179 (185)
Q Consensus       168 ~l~~~l~~~~~~  179 (185)
                      ++++.+.+.+..
T Consensus       156 eL~~~L~~l~~~  167 (581)
T TIGR00475       156 ELKKELKNLLES  167 (581)
T ss_pred             hHHHHHHHHHHh
Confidence            999998876643

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd00880 Era_like Era (E

Probab=99.88  E-value=1.7e-21  Score=132.54  Aligned_cols=150  Identities=23%  Similarity=0.275  Sum_probs=104.2

Q ss_pred             EEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEc-CeEEEEEEcCCchhhH-------HHHHhhhcCCCEEE
Q 029920           21 MVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQ-KYTLNIWDVGGQRTIR-------SYWRNYFEQTDGLV   88 (185)
Q Consensus        21 v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~-~~~~~~~D~~g~~~~~-------~~~~~~~~~~d~~i   88 (185)
                      ++|++|+|||||++++.+........    +........... ...+.+||+||.....       .....++..+|+++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il   80 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL   80 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence            58999999999999999876653222    222333333333 6789999999966543       24445778999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      +|+|+.+..+..... ++...    ...+.|+++|+||+|+............... ........+++++||+++.|+++
T Consensus        81 ~v~~~~~~~~~~~~~-~~~~~----~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sa~~~~~v~~  154 (163)
T cd00880          81 FVVDADLRADEEEEK-LLELL----RERGKPVLLVLNKIDLLPEEEEEELLELRLL-ILLLLLGLPVIAVSALTGEGIDE  154 (163)
T ss_pred             EEEeCCCCCCHHHHH-HHHHH----HhcCCeEEEEEEccccCChhhHHHHHHHHHh-hcccccCCceEEEeeeccCCHHH
Confidence            999999877666543 22222    2247999999999998766544443221111 11222567899999999999999


Q ss_pred             HHHHHHHH
Q 029920          169 GFDWLVQD  176 (185)
Q Consensus       169 l~~~l~~~  176 (185)
                      +++++.+.
T Consensus       155 l~~~l~~~  162 (163)
T cd00880         155 LREALIEA  162 (163)
T ss_pred             HHHHHHhh
Confidence            99998765

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.87  E-value=4.6e-21  Score=146.20  Aligned_cols=153  Identities=20%  Similarity=0.292  Sum_probs=113.5

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceE----EEEEEEcCeEEEEEEcCCchhhHHH--------HHhh
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFN----IKTVTYQKYTLNIWDVGGQRTIRSY--------WRNY   80 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~   80 (185)
                      -..-++++++|.||+|||||+|+|.+.....+++-.|++    ...+..+++++.+.||+|..+-...        ....
T Consensus       214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            445689999999999999999999999998777655544    4456779999999999996543222        2334


Q ss_pred             hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecc
Q 029920           81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSA  160 (185)
Q Consensus        81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (185)
                      ++.+|.+++|+|++.+.+-....     +.. ....+.|+++|.||.|+.........  ...       .+.+++.+|+
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~~-----~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~--~~~-------~~~~~i~iSa  358 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDLA-----LIE-LLPKKKPIIVVLNKADLVSKIELESE--KLA-------NGDAIISISA  358 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhHH-----HHH-hcccCCCEEEEEechhcccccccchh--hcc-------CCCceEEEEe
Confidence            68899999999999852222211     111 12347999999999999876553333  111       3447899999


Q ss_pred             cCCCCHHHHHHHHHHHHhhh
Q 029920          161 YTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~~~  180 (185)
                      ++|.|++.+.+.|.+.+...
T Consensus       359 ~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         359 KTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             cCccCHHHHHHHHHHHHhhc
Confidence            99999999999998877543

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.87  E-value=3.4e-23  Score=138.43  Aligned_cols=162  Identities=17%  Similarity=0.277  Sum_probs=128.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EE--EEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KT--VTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      +..+|++++|..++||||++.++|.+-+. .+-.++++..  +.  +..+++.+.+||++|++++..+...|++++.+.+
T Consensus        18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v   97 (246)
T KOG4252|consen   18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV   97 (246)
T ss_pred             hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence            44689999999999999999999977664 5556666332  22  3345678899999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH-HHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP-TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      +|++-+|+.||+....|...+....  ..+|.++|-||+|+.+.-.. ....+.+.     +.....++.+|++...|+.
T Consensus        98 LVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~la-----k~l~~RlyRtSvked~NV~  170 (246)
T KOG4252|consen   98 LVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLA-----KKLHKRLYRTSVKEDFNVM  170 (246)
T ss_pred             EEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHH-----HHhhhhhhhhhhhhhhhhH
Confidence            9999999999999999999987754  48999999999998654211 11111111     1245568999999999999


Q ss_pred             HHHHHHHHHHhhhcc
Q 029920          168 EGFDWLVQDIASRIY  182 (185)
Q Consensus       168 ~l~~~l~~~~~~~~~  182 (185)
                      .+|..|+..+.+...
T Consensus       171 ~vF~YLaeK~~q~~k  185 (246)
T KOG4252|consen  171 HVFAYLAEKLTQQKK  185 (246)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998876544

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.87  E-value=3.7e-21  Score=150.64  Aligned_cols=154  Identities=19%  Similarity=0.189  Sum_probs=101.6

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCC--CCc--------------------------------ccccCcceEEEEEEE
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGE--DTS--------------------------------VISPTLGFNIKTVTY   57 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~   57 (185)
                      ..++.++|+++|+.++|||||+++|+..  ...                                ....|.......+..
T Consensus         3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~   82 (426)
T TIGR00483         3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET   82 (426)
T ss_pred             CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc
Confidence            4677899999999999999999998742  111                                011233344455667


Q ss_pred             cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEeecCCCCCCCCH-
Q 029920           58 QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCK-MELDNLLKEERLSGASLLILANKQDINGALTP-  135 (185)
Q Consensus        58 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-  135 (185)
                      ++..+.+|||||++.+.......+..+|++++|+|+++.+++.... .....+....  ...|+++++||+|+.+.... 
T Consensus        83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~  160 (426)
T TIGR00483        83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEE  160 (426)
T ss_pred             CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHH
Confidence            7899999999999988777777788999999999999874331111 1111122221  23579999999999642221 


Q ss_pred             -----HHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920          136 -----TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus       136 -----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                           .++...+....+. ...++++++||++|.|+++
T Consensus       161 ~~~~~~ei~~~~~~~g~~-~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       161 FEAIKKEVSNLIKKVGYN-PDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             HHHHHHHHHHHHHHcCCC-cccceEEEeeccccccccc
Confidence                 1122222111111 1347899999999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.87  E-value=2.3e-20  Score=135.01  Aligned_cols=149  Identities=21%  Similarity=0.207  Sum_probs=102.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCeEEEEEEcCCchhh-------HHHHHhhhcCCCEE
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKYTLNIWDVGGQRTI-------RSYWRNYFEQTDGL   87 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~d~~   87 (185)
                      +|+++|++|+|||||+++|.+....   ....|.......+.+++..+++||+||..+.       ......+++.+|++
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i   81 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI   81 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence            7899999999999999999987642   1223444555667778899999999996432       22345578999999


Q ss_pred             EEEEeCCCcc-cHHHHHHHHH----------------------------------------HHHhcc-------------
Q 029920           88 VWVVDSSDLR-RLDDCKMELD----------------------------------------NLLKEE-------------  113 (185)
Q Consensus        88 i~v~d~~~~~-s~~~~~~~~~----------------------------------------~~~~~~-------------  113 (185)
                      ++|+|++++. ..+.+...+.                                        .++...             
T Consensus        82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~  161 (233)
T cd01896          82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI  161 (233)
T ss_pred             EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence            9999998754 2222222221                                        111110             


Q ss_pred             -----------ccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHH
Q 029920          114 -----------RLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       114 -----------~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (185)
                                 ....+|+++|+||+|+...   ++... +.       ...+++++||+++.|++++++.+.+.+
T Consensus       162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~---~~~~~-~~-------~~~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISI---EELDL-LA-------RQPNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CHHHHHHHHhCCceEeeEEEEEECccCCCH---HHHHH-Hh-------cCCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                       0123689999999998643   22221 21       123589999999999999999998865

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.86  E-value=9e-21  Score=156.23  Aligned_cols=150  Identities=21%  Similarity=0.210  Sum_probs=104.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcc----eEEEEEEEcCeEEEEEEcCCchhhHH----------HHHhh
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLG----FNIKTVTYQKYTLNIWDVGGQRTIRS----------YWRNY   80 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~   80 (185)
                      +.++|+++|+||||||||+|+|++.+.. .+...+    .....+..++..+.++||||..++..          ....+
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~-vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQR-VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            3578999999999999999999987652 333333    33334566788999999999765432          12223


Q ss_pred             h--cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEee
Q 029920           81 F--EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGC  158 (185)
Q Consensus        81 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (185)
                      +  ..+|++++|+|+++.++.   ..++.++.+    .++|+++++||+|+.+........+.+.     +..+.|++++
T Consensus        81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~-----~~LG~pVvpi  148 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALS-----ARLGCPVIPL  148 (772)
T ss_pred             HhccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHH-----HHhCCCEEEE
Confidence            2  478999999999885432   223333332    2799999999999865433222222222     1145689999


Q ss_pred             cccCCCCHHHHHHHHHHHH
Q 029920          159 SAYTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~  177 (185)
                      ||+++.|++++.+.+.+..
T Consensus       149 SA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        149 VSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             EeecCCCHHHHHHHHHHhh
Confidence            9999999999999987764

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.86  E-value=1.9e-20  Score=151.15  Aligned_cols=158  Identities=19%  Similarity=0.200  Sum_probs=107.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCC--Cc------cc------ccCcce----EEEEEEE-----cCeEEEEEEcCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGED--TS------VI------SPTLGF----NIKTVTY-----QKYTLNIWDVGG   69 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~--~~------~~------~~t~~~----~~~~~~~-----~~~~~~~~D~~g   69 (185)
                      .++..+++++|+.++|||||+++|....  +.      .+      ..+.+.    ....+.+     ..+.+++|||||
T Consensus         4 ~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPG   83 (600)
T PRK05433          4 MKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPG   83 (600)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCC
Confidence            3456789999999999999999986531  10      11      111222    1222333     257899999999


Q ss_pred             chhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccC
Q 029920           70 QRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDK  149 (185)
Q Consensus        70 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~  149 (185)
                      +.++...+..+++.+|++++|+|+++....+....+ .....    .+.|+++|+||+|+..... ......+... + .
T Consensus        84 h~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~-~~~~~----~~lpiIvViNKiDl~~a~~-~~v~~ei~~~-l-g  155 (600)
T PRK05433         84 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANV-YLALE----NDLEIIPVLNKIDLPAADP-ERVKQEIEDV-I-G  155 (600)
T ss_pred             cHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHH-HHHHH----CCCCEEEEEECCCCCcccH-HHHHHHHHHH-h-C
Confidence            999999999999999999999999986554433332 22222    3689999999999865432 2222111110 0 0


Q ss_pred             ccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          150 TRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       150 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      .....++++||++|.|+++++++|.+.+.
T Consensus       156 ~~~~~vi~iSAktG~GI~~Ll~~I~~~lp  184 (600)
T PRK05433        156 IDASDAVLVSAKTGIGIEEVLEAIVERIP  184 (600)
T ss_pred             CCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            02235899999999999999999998765

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.86  E-value=6.4e-21  Score=149.29  Aligned_cols=154  Identities=21%  Similarity=0.241  Sum_probs=101.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc----------------------------------ccccCcceEEEEEEEc
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS----------------------------------VISPTLGFNIKTVTYQ   58 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~----------------------------------~~~~t~~~~~~~~~~~   58 (185)
                      .+..++|+++|++++|||||+++|+...-.                                  ....|.......+..+
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            567899999999999999999999732211                                  1122444555566778


Q ss_pred             CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH---
Q 029920           59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP---  135 (185)
Q Consensus        59 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~---  135 (185)
                      +..+.+|||||++.+.......+..+|++++|+|++++.++.....+...+....  ...|+++++||+|+.+....   
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~  160 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE  160 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence            8999999999998887666666789999999999987322222111122222221  12479999999998752211   


Q ss_pred             ---HHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920          136 ---TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus       136 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (185)
                         +++...+....+.. ..++++++||++|.|++++
T Consensus       161 ~~~~~i~~~l~~~g~~~-~~~~ii~iSA~~g~gi~~~  196 (425)
T PRK12317        161 EVKEEVSKLLKMVGYKP-DDIPFIPVSAFEGDNVVKK  196 (425)
T ss_pred             HHHHHHHHHHHhhCCCc-CcceEEEeecccCCCcccc
Confidence               12222221111111 2468999999999999873

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.86  E-value=8.9e-21  Score=124.99  Aligned_cols=135  Identities=24%  Similarity=0.294  Sum_probs=95.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCC----chhhHHHHHhhhcCCCEEEEEEeC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGG----QRTIRSYWRNYFEQTDGLVWVVDS   93 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g----~~~~~~~~~~~~~~~d~~i~v~d~   93 (185)
                      ||+++|+.|||||||+++|.+.... +..|....     +.   =..+||||    .+.+..........+|++++|.|+
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~-~~KTq~i~-----~~---~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~da   73 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIR-YKKTQAIE-----YY---DNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDA   73 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCC-cCccceeE-----ec---ccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecC
Confidence            7999999999999999999987552 22222221     11   14599999    444555555566789999999999


Q ss_pred             CCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC-CCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHH
Q 029920           94 SDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN-GALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDW  172 (185)
Q Consensus        94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (185)
                      +++.+.-.     -.+...   .+.|+|-|+||+|+. +..+.+.....+....+.     .+|++|+.+|+|+++|.++
T Consensus        74 t~~~~~~p-----P~fa~~---f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~-----~if~vS~~~~eGi~eL~~~  140 (143)
T PF10662_consen   74 TEPRSVFP-----PGFASM---FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK-----EIFEVSAVTGEGIEELKDY  140 (143)
T ss_pred             CCCCccCC-----chhhcc---cCCCEEEEEECccCccchhhHHHHHHHHHHcCCC-----CeEEEECCCCcCHHHHHHH
Confidence            98654321     111111   258999999999998 444555555556554433     3699999999999999988


Q ss_pred             HH
Q 029920          173 LV  174 (185)
Q Consensus       173 l~  174 (185)
                      |.
T Consensus       141 L~  142 (143)
T PF10662_consen  141 LE  142 (143)
T ss_pred             Hh
Confidence            64

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.86  E-value=1.6e-20  Score=132.21  Aligned_cols=145  Identities=19%  Similarity=0.131  Sum_probs=95.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCC----------c---------ccccCcceEEEEEEEcCeEEEEEEcCCchhhHHH
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDT----------S---------VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSY   76 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~----------~---------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   76 (185)
                      .++|+++|+.++|||||+++|++...          .         ....|.......+..++.++.++||||+..+...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            47899999999999999999975310          0         0111222233334556789999999999988888


Q ss_pred             HHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEeecCCCCCCCCH-H----HHHHhcCcccccCc
Q 029920           77 WRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS-LLILANKQDINGALTP-T----EIAKVLNLEAMDKT  150 (185)
Q Consensus        77 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~-~----~~~~~~~~~~~~~~  150 (185)
                      ....+..+|++++|+|+...-. ......+..+..    .++| +|+++||+|+...... +    ++...+....+.. 
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~-  155 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG-  155 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc-
Confidence            8888899999999999986422 222222333222    2565 7899999998643221 1    1222222111211 


Q ss_pred             cceEEEeecccCCCCH
Q 029920          151 RHWKIVGCSAYTGEGL  166 (185)
Q Consensus       151 ~~~~~~~~Sa~~~~~i  166 (185)
                      .+++++++||++|.|+
T Consensus       156 ~~v~iipiSa~~g~n~  171 (195)
T cd01884         156 DNTPIVRGSALKALEG  171 (195)
T ss_pred             cCCeEEEeeCccccCC
Confidence            3588999999999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=4.8e-21  Score=126.55  Aligned_cols=169  Identities=34%  Similarity=0.546  Sum_probs=139.7

Q ss_pred             HhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920            9 KIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus         9 ~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ...--.+.=|++++|--|+|||||++.|.........||...+...+.+.+..|+.+|.+|+..-+..|..|+..+|+++
T Consensus        13 ~LgL~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv   92 (193)
T KOG0077|consen   13 FLGLYKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIV   92 (193)
T ss_pred             HHHHhccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence            34445666799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCccccc---------Cc--cceEEEe
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMD---------KT--RHWKIVG  157 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~--~~~~~~~  157 (185)
                      +.+|+.|.+.|.+.+..++..+......+.|+++.+||+|...+....+....+......         ..  .-..++.
T Consensus        93 ~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfm  172 (193)
T KOG0077|consen   93 YLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFM  172 (193)
T ss_pred             eeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEE
Confidence            999999999999999999988887667789999999999998876665544333221111         11  1234677


Q ss_pred             ecccCCCCHHHHHHHHHHHH
Q 029920          158 CSAYTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       158 ~Sa~~~~~i~~l~~~l~~~~  177 (185)
                      ||...+.+-.+.|.|+.+.+
T Consensus       173 csi~~~~gy~e~fkwl~qyi  192 (193)
T KOG0077|consen  173 CSIVRKMGYGEGFKWLSQYI  192 (193)
T ss_pred             EEEEccCccceeeeehhhhc
Confidence            88888888777887776543

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.86  E-value=2.8e-20  Score=149.26  Aligned_cols=156  Identities=22%  Similarity=0.250  Sum_probs=104.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCcc-----cccCcceEEEEEEE----------------cCeEEEEEEcCCchhh
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSV-----ISPTLGFNIKTVTY----------------QKYTLNIWDVGGQRTI   73 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~-----~~~t~~~~~~~~~~----------------~~~~~~~~D~~g~~~~   73 (185)
                      +.+-|+++|++|+|||||+++|.+..+..     .+.+.+........                ....+.+|||||++.+
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            45679999999999999999999876632     22233322211111                1124889999999999


Q ss_pred             HHHHHhhhcCCCEEEEEEeCCC---cccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--------------CHH
Q 029920           74 RSYWRNYFEQTDGLVWVVDSSD---LRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--------------TPT  136 (185)
Q Consensus        74 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--------------~~~  136 (185)
                      ..++..+++.+|++++|+|+++   +.+++.+    . .+..   .+.|+++++||+|+.+..              ...
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i----~-~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~  154 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQEAL----N-ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEI  154 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH----H-HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhH
Confidence            9999999999999999999987   3333332    1 1221   368999999999986421              000


Q ss_pred             HHHH-----------hcCcccc---------cCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          137 EIAK-----------VLNLEAM---------DKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       137 ~~~~-----------~~~~~~~---------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      .+..           .+....+         ......+++++||++|.|++++.+++.....
T Consensus       155 ~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~  216 (590)
T TIGR00491       155 QVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ  216 (590)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence            1100           1111111         1123578999999999999999999876543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.85  E-value=8.3e-21  Score=153.07  Aligned_cols=142  Identities=25%  Similarity=0.282  Sum_probs=97.6

Q ss_pred             cCCCCChHHHHHHHhCCCCcccccCcc----eEEEEEEEcCeEEEEEEcCCchhhHHH------HHhhh--cCCCEEEEE
Q 029920           23 GLDNSGKTTIVLKINGEDTSVISPTLG----FNIKTVTYQKYTLNIWDVGGQRTIRSY------WRNYF--EQTDGLVWV   90 (185)
Q Consensus        23 G~~~~GKttli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~d~~i~v   90 (185)
                      |.+|+|||||+|++.+.... .+...+    .....+.+++..+++|||||+.++...      ...++  +.+|++++|
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~-v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~V   79 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQT-VGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNV   79 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCe-ecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEE
Confidence            89999999999999988652 222222    333446677888999999998765432      33333  478999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF  170 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (185)
                      +|+++.+.   ...+..+..+    .+.|+++++||+|+.+........+.+.     +..+.+++++||++|.|+++++
T Consensus        80 vDat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~-----~~lg~pvv~tSA~tg~Gi~eL~  147 (591)
T TIGR00437        80 VDASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLE-----ERLGVPVVPTSATEGRGIERLK  147 (591)
T ss_pred             ecCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHH-----HHcCCCEEEEECCCCCCHHHHH
Confidence            99987432   2222333322    3799999999999864332221112221     1145689999999999999999


Q ss_pred             HHHHHHH
Q 029920          171 DWLVQDI  177 (185)
Q Consensus       171 ~~l~~~~  177 (185)
                      +++.+..
T Consensus       148 ~~i~~~~  154 (591)
T TIGR00437       148 DAIRKAI  154 (591)
T ss_pred             HHHHHHh
Confidence            9998754

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.85  E-value=4.7e-20  Score=126.86  Aligned_cols=158  Identities=19%  Similarity=0.281  Sum_probs=110.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCC-CcccccCcceEEEE--EEEcCeEEEEEEcCC----------chhhHHHHHh
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGED-TSVISPTLGFNIKT--VTYQKYTLNIWDVGG----------QRTIRSYWRN   79 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~-~~~~~~t~~~~~~~--~~~~~~~~~~~D~~g----------~~~~~~~~~~   79 (185)
                      ....+-|+++|.+|+|||||||+|++.+ ....+.|+|.++..  +.+++ .+.++|.||          .+.+..+...
T Consensus        21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~~   99 (200)
T COG0218          21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD-ELRLVDLPGYGYAKVPKEVKEKWKKLIEE   99 (200)
T ss_pred             CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC-cEEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence            5567899999999999999999999965 57788888866654  34443 389999999          4445556666


Q ss_pred             hhc---CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHH----HHHhcCcccccCccc
Q 029920           80 YFE---QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTE----IAKVLNLEAMDKTRH  152 (185)
Q Consensus        80 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~  152 (185)
                      |++   +..++++++|+..+-.-  ......+++.+   .++|+++++||+|.....+...    +...+......  ..
T Consensus       100 YL~~R~~L~~vvlliD~r~~~~~--~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~--~~  172 (200)
T COG0218         100 YLEKRANLKGVVLLIDARHPPKD--LDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPD--DQ  172 (200)
T ss_pred             HHhhchhheEEEEEEECCCCCcH--HHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCc--cc
Confidence            764   35788999999874322  22222333333   3899999999999877544432    22222221111  11


Q ss_pred             eEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920          153 WKIVGCSAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       153 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                      + ++.+|+..+.|++++.+.|.+.+..
T Consensus       173 ~-~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         173 W-VVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             e-EEEEecccccCHHHHHHHHHHHhhc
Confidence            1 7889999999999999999887754

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.85  E-value=7e-20  Score=147.47  Aligned_cols=157  Identities=21%  Similarity=0.259  Sum_probs=113.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCC--CCccc-----------------ccCcceEEEEEEEcCeEEEEEEcCCchhhHHHH
Q 029920           17 MRILMVGLDNSGKTTIVLKINGE--DTSVI-----------------SPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYW   77 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~--~~~~~-----------------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~   77 (185)
                      .+|+++|+.++|||||+++|...  .+...                 ..|.......+.+++..+++|||||+.+|....
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev   81 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV   81 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence            47999999999999999998752  22111                 123333444578889999999999999999999


Q ss_pred             HhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH---HHHHHhcCcccc-cCccce
Q 029920           78 RNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP---TEIAKVLNLEAM-DKTRHW  153 (185)
Q Consensus        78 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~---~~~~~~~~~~~~-~~~~~~  153 (185)
                      ..+++.+|++++|+|+.+. .......++.....    .++|+++++||+|+......   .++...+..... .....+
T Consensus        82 ~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~  156 (594)
T TIGR01394        82 ERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF  156 (594)
T ss_pred             HHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence            9999999999999999873 23444555555544    36899999999998654322   222232221111 112457


Q ss_pred             EEEeecccCCC----------CHHHHHHHHHHHHh
Q 029920          154 KIVGCSAYTGE----------GLLEGFDWLVQDIA  178 (185)
Q Consensus       154 ~~~~~Sa~~~~----------~i~~l~~~l~~~~~  178 (185)
                      |++++||++|.          |++.+++.+.+.+.
T Consensus       157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP  191 (594)
T TIGR01394       157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP  191 (594)
T ss_pred             cEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence            89999999996          79999999998775

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.85  E-value=2e-20  Score=133.39  Aligned_cols=147  Identities=16%  Similarity=0.153  Sum_probs=93.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcc----------------------------------cccCcceEEEEEEEcCeEEE
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSV----------------------------------ISPTLGFNIKTVTYQKYTLN   63 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~----------------------------------~~~t~~~~~~~~~~~~~~~~   63 (185)
                      +|+++|++|+|||||+++|....-..                                  ...|.......+.+++.++.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            58999999999999999986432211                                  11122233444566788999


Q ss_pred             EEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH--HHHHHh
Q 029920           64 IWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP--TEIAKV  141 (185)
Q Consensus        64 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~  141 (185)
                      ++||||++.+.......+..+|++++|+|++++..-. ... ...+....  ...++|+|+||+|+......  ..+...
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~-~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~  156 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRR-HSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD  156 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHH-HHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence            9999999888776777789999999999998753211 111 12222221  12457889999998653221  111111


Q ss_pred             cCc--ccccCccceEEEeecccCCCCHHHH
Q 029920          142 LNL--EAMDKTRHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus       142 ~~~--~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (185)
                      +..  ..+. ....+++++||++|.|+++.
T Consensus       157 ~~~~~~~~~-~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         157 YLAFAAKLG-IEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHcC-CCCceEEEEeCCCCCCCccC
Confidence            111  0111 12457999999999999753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.85  E-value=4.9e-20  Score=143.26  Aligned_cols=161  Identities=20%  Similarity=0.183  Sum_probs=104.1

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCccc------ccCcceEEEEEEE---------------------c-----C
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTSVI------SPTLGFNIKTVTY---------------------Q-----K   59 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~------~~t~~~~~~~~~~---------------------~-----~   59 (185)
                      +.++.++|+++|+.++|||||+.+|.+......      ..|.........+                     +     .
T Consensus         5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (411)
T PRK04000          5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL   84 (411)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence            467789999999999999999999976422111      1122111100000                     0     2


Q ss_pred             eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHH---
Q 029920           60 YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPT---  136 (185)
Q Consensus        60 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~---  136 (185)
                      ..+.+|||||++.+..........+|++++|+|++++.........+.. +...  ...|+++|+||+|+.+.....   
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~-l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~  161 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMA-LDII--GIKNIVIVQNKIDLVSKERALENY  161 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHH-HHHc--CCCcEEEEEEeeccccchhHHHHH
Confidence            5799999999998887766667788999999999964311112222222 2221  124689999999997643322   


Q ss_pred             -HHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          137 -EIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       137 -~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                       ++...+...   .....+++++||++|.|++++++.|.+.+.
T Consensus       162 ~~i~~~l~~~---~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        162 EQIKEFVKGT---VAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             HHHHHHhccc---cCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence             122211110   113578999999999999999999988764

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.84  E-value=4.7e-20  Score=143.37  Aligned_cols=161  Identities=19%  Similarity=0.148  Sum_probs=104.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccc------cCcceEEEE--------------E------EE------cCeE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVIS------PTLGFNIKT--------------V------TY------QKYT   61 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~------~t~~~~~~~--------------~------~~------~~~~   61 (185)
                      ...++|+++|+.++|||||+++|.+.......      -|.......              +      +.      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            46789999999999999999999764331110      011111000              0      01      1467


Q ss_pred             EEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHh
Q 029920           62 LNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKV  141 (185)
Q Consensus        62 ~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~  141 (185)
                      +.++|+||++.+...+......+|++++|+|+++........+.+..+ ...  ...|+++++||+|+.+.....+....
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~  158 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALENYEE  158 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence            999999999999888888888999999999999643112222333322 221  13579999999999764322111111


Q ss_pred             cCccccc--CccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          142 LNLEAMD--KTRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       142 ~~~~~~~--~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      +.. .+.  ....++++++||++|.|+++++++|.+.+.
T Consensus       159 i~~-~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       159 IKE-FVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HHh-hhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            111 011  113578999999999999999999988654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.84  E-value=1.1e-19  Score=131.57  Aligned_cols=156  Identities=19%  Similarity=0.194  Sum_probs=107.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCc--------------c-------cccCcceEEEEEEEcCeEEEEEEcCCchhhHHH
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTS--------------V-------ISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSY   76 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~--------------~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   76 (185)
                      +|+++|+.|+|||||+++|....-.              .       ...+.......+.+++.++.+|||||+..+...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            5899999999999999998643110              0       011222344556788899999999999999888


Q ss_pred             HHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH---HHHHHhcCc---------
Q 029920           77 WRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP---TEIAKVLNL---------  144 (185)
Q Consensus        77 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~---~~~~~~~~~---------  144 (185)
                      +..+++.+|++++|+|+++.... ....++.....    .++|+++++||+|+......   .++...++.         
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~  155 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG  155 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence            89999999999999999985433 22333333322    37899999999998753211   111111110         


Q ss_pred             ---------------------------------ccc-------------cCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          145 ---------------------------------EAM-------------DKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       145 ---------------------------------~~~-------------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                                                       ...             ....-+|++..||.++.|+..+++.+.+.+.
T Consensus       156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p  235 (237)
T cd04168         156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP  235 (237)
T ss_pred             EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence                                             000             0124568888999999999999999988763

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.84  E-value=1.8e-19  Score=121.45  Aligned_cols=156  Identities=24%  Similarity=0.374  Sum_probs=123.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCccc----------c---cCcceEEEEEEEcC-eEEEEEEcCCchhhHHHHH
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVI----------S---PTLGFNIKTVTYQK-YTLNIWDVGGQRTIRSYWR   78 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~----------~---~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~   78 (185)
                      .....||+|.|+-++||||++.++..+.....          .   .|....+..+.+.+ ..+-+++||||++|..+|.
T Consensus         7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~   86 (187)
T COG2229           7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE   86 (187)
T ss_pred             cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH
Confidence            45678999999999999999999988775211          1   12223344445544 8899999999999999999


Q ss_pred             hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEee
Q 029920           79 NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGC  158 (185)
Q Consensus        79 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (185)
                      .+++++.+.++++|.+++..+ . ...+..++....  .+|++|.+||.|+.+...++.+.+.+..+.    ...+++++
T Consensus        87 ~l~~ga~gaivlVDss~~~~~-~-a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~----~~~~vi~~  158 (187)
T COG2229          87 ILSRGAVGAIVLVDSSRPITF-H-AEEIIDFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLEL----LSVPVIEI  158 (187)
T ss_pred             HHhCCcceEEEEEecCCCcch-H-HHHHHHHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhcc----CCCceeee
Confidence            999999999999999998887 2 233444444432  299999999999999999999988887643    36789999


Q ss_pred             cccCCCCHHHHHHHHHHH
Q 029920          159 SAYTGEGLLEGFDWLVQD  176 (185)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~  176 (185)
                      +|.++.+..+.++.+...
T Consensus       159 ~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         159 DATEGEGARDQLDVLLLK  176 (187)
T ss_pred             ecccchhHHHHHHHHHhh
Confidence            999999999988877655

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.84  E-value=6.8e-20  Score=131.62  Aligned_cols=153  Identities=21%  Similarity=0.180  Sum_probs=98.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCccc-----------------ccCc-------ceE-----------------EEEEE
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVI-----------------SPTL-------GFN-----------------IKTVT   56 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~-----------------~~t~-------~~~-----------------~~~~~   56 (185)
                      ||+++|+.++|||||++++....+...                 ..+.       ++.                 ...+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            589999999999999999986444210                 0011       010                 02234


Q ss_pred             EcCeEEEEEEcCCchhhHHHHHhhhc--CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC
Q 029920           57 YQKYTLNIWDVGGQRTIRSYWRNYFE--QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT  134 (185)
Q Consensus        57 ~~~~~~~~~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~  134 (185)
                      ..+..+.++||||++.+.......+.  .+|++++|+|+..... ......+... ..   .++|+++++||+|+.+...
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l-~~---~~ip~ivvvNK~D~~~~~~  155 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLA-LA---LNIPVFVVVTKIDLAPANI  155 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEECccccCHHH
Confidence            45678999999999988766555554  6899999999986432 2222222222 22   3689999999999865433


Q ss_pred             HHHHHH----hcCccc--------------------ccCccceEEEeecccCCCCHHHHHHHHHH
Q 029920          135 PTEIAK----VLNLEA--------------------MDKTRHWKIVGCSAYTGEGLLEGFDWLVQ  175 (185)
Q Consensus       135 ~~~~~~----~~~~~~--------------------~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (185)
                      ..+...    .+....                    .......|+|.+||.+|.|++++++.|..
T Consensus       156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            333222    222111                    11223458999999999999999987653

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK10218 GTP-binding protein; Provisional

Probab=99.84  E-value=9e-20  Score=146.76  Aligned_cols=159  Identities=21%  Similarity=0.271  Sum_probs=111.7

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhC--CCCcc-------------cccCcceE----EEEEEEcCeEEEEEEcCCchhhHH
Q 029920           15 KEMRILMVGLDNSGKTTIVLKING--EDTSV-------------ISPTLGFN----IKTVTYQKYTLNIWDVGGQRTIRS   75 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~--~~~~~-------------~~~t~~~~----~~~~~~~~~~~~~~D~~g~~~~~~   75 (185)
                      +..+|+++|+.++|||||+++|..  +.+..             ...+.+.+    ...+.+++..+.+|||||+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            457899999999999999999986  22211             11223322    334567889999999999999999


Q ss_pred             HHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHH---HHHHhcCc-ccccCcc
Q 029920           76 YWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPT---EIAKVLNL-EAMDKTR  151 (185)
Q Consensus        76 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~---~~~~~~~~-~~~~~~~  151 (185)
                      .+..+++.+|++++|+|+.+... ......+.....    .++|.++++||+|+.......   ++...+.. .......
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~-~qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~  158 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL  158 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCcc-HHHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence            99999999999999999987432 223333343333    368899999999987553322   23333221 1111224


Q ss_pred             ceEEEeecccCCC----------CHHHHHHHHHHHHh
Q 029920          152 HWKIVGCSAYTGE----------GLLEGFDWLVQDIA  178 (185)
Q Consensus       152 ~~~~~~~Sa~~~~----------~i~~l~~~l~~~~~  178 (185)
                      .+|++.+||++|.          ++..+++.|.+.+.
T Consensus       159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP  195 (607)
T PRK10218        159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP  195 (607)
T ss_pred             CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence            5889999999998          58888888887764

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.84  E-value=1.2e-19  Score=124.72  Aligned_cols=153  Identities=20%  Similarity=0.200  Sum_probs=97.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC-cccccCcceEEEE--EEEcCeEEEEEEcCCchh----------hHHHHHhhhc--
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT-SVISPTLGFNIKT--VTYQKYTLNIWDVGGQRT----------IRSYWRNYFE--   82 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~-~~~~~t~~~~~~~--~~~~~~~~~~~D~~g~~~----------~~~~~~~~~~--   82 (185)
                      .|+++|++|+|||||++++.++.. +...++.+.+...  +..+ ..+.++||||...          +......++.  
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~   79 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR   79 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence            379999999999999999995444 3444554433322  2233 3899999999432          3333344443  


Q ss_pred             -CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeeccc
Q 029920           83 -QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAY  161 (185)
Q Consensus        83 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (185)
                       ..+++++++|..+..+...  ..+...+..   .+.|+++++||+|+........................+++++||+
T Consensus        80 ~~~~~~~~v~d~~~~~~~~~--~~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~  154 (170)
T cd01876          80 ENLKGVVLLIDSRHGPTEID--LEMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSL  154 (170)
T ss_pred             hhhhEEEEEEEcCcCCCHhH--HHHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecC
Confidence             4578899999986532221  111222222   2589999999999865433333332222111102245678999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 029920          162 TGEGLLEGFDWLVQD  176 (185)
Q Consensus       162 ~~~~i~~l~~~l~~~  176 (185)
                      ++.++++++++|.+.
T Consensus       155 ~~~~~~~l~~~l~~~  169 (170)
T cd01876         155 KGQGIDELRALIEKW  169 (170)
T ss_pred             CCCCHHHHHHHHHHh
Confidence            999999999998875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.83  E-value=1.9e-19  Score=130.30  Aligned_cols=169  Identities=21%  Similarity=0.243  Sum_probs=114.1

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEE----EEEEcCeEEEEEEcCCchh------------hHH
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIK----TVTYQKYTLNIWDVGGQRT------------IRS   75 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~------------~~~   75 (185)
                      +..+.++|+|+|.||+|||||.|.+.|.+....+....++..    .+..+..++.++||||.-.            +.+
T Consensus        68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq  147 (379)
T KOG1423|consen   68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ  147 (379)
T ss_pred             hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence            356678999999999999999999999999877765554444    3455779999999999322            112


Q ss_pred             HHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-----------------HHHH
Q 029920           76 YWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-----------------PTEI  138 (185)
Q Consensus        76 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-----------------~~~~  138 (185)
                      .....+..+|.+++|+|++++...-. -..+..+-.+   .++|-++|.||.|......                 ..++
T Consensus       148 ~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v  223 (379)
T KOG1423|consen  148 NPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV  223 (379)
T ss_pred             CHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence            23345678999999999996432221 1112222222   2689999999999764311                 1112


Q ss_pred             HHhcCcc----cccCccce----EEEeecccCCCCHHHHHHHHHHHHhhhcccC
Q 029920          139 AKVLNLE----AMDKTRHW----KIVGCSAYTGEGLLEGFDWLVQDIASRIYLL  184 (185)
Q Consensus       139 ~~~~~~~----~~~~~~~~----~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~  184 (185)
                      .+.+...    .+...++|    .+|.+||++|.|++++-++|+....+.-|-+
T Consensus       224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y  277 (379)
T KOG1423|consen  224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKY  277 (379)
T ss_pred             HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCC
Confidence            2222211    11112233    3799999999999999999999988876654

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.83  E-value=4.7e-20  Score=132.45  Aligned_cols=146  Identities=21%  Similarity=0.204  Sum_probs=94.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC--c--------------------------------ccccCcceEEEEEEEcCeEEE
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT--S--------------------------------VISPTLGFNIKTVTYQKYTLN   63 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~--~--------------------------------~~~~t~~~~~~~~~~~~~~~~   63 (185)
                      +|+++|+.++|||||+.+|....-  .                                ....|.......+.+++..+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            589999999999999999842110  0                                001133334445677889999


Q ss_pred             EEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCccc---H---HHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC-C--
Q 029920           64 IWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRR---L---DDCKMELDNLLKEERLSGASLLILANKQDINGAL-T--  134 (185)
Q Consensus        64 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-~--  134 (185)
                      ++||||+..+.......+..+|++++|+|+++...   +   ......+.. ...  ....|+++++||+|+.... .  
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~iiivvNK~Dl~~~~~~~~  157 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALL-ART--LGVKQLIVAVNKMDDVTVNWSEE  157 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHH-HHH--cCCCeEEEEEEccccccccccHH
Confidence            99999998888777777889999999999998421   1   112222221 121  1236899999999987421 1  


Q ss_pred             -HHHHHHhc----CcccccCccceEEEeecccCCCCHH
Q 029920          135 -PTEIAKVL----NLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus       135 -~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                       ..++...+    ...... ...++++++||++|.|++
T Consensus       158 ~~~~i~~~l~~~l~~~~~~-~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         158 RYDEIKKELSPFLKKVGYN-PKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHcCCC-cCCceEEEeecCcCCCCC
Confidence             12222222    111111 135889999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.83  E-value=2.1e-19  Score=144.65  Aligned_cols=157  Identities=22%  Similarity=0.238  Sum_probs=103.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcccc-----cCcceEEEEEEEc----C-------e-----EEEEEEcCCch
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVIS-----PTLGFNIKTVTYQ----K-------Y-----TLNIWDVGGQR   71 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~-----~t~~~~~~~~~~~----~-------~-----~~~~~D~~g~~   71 (185)
                      ..+++.|+++|++|+|||||+++|.+.......     .+.+.........    +       .     .+.+|||||++
T Consensus         3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e   82 (586)
T PRK04004          3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE   82 (586)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence            345678999999999999999999876553222     2333222111110    0       1     26899999999


Q ss_pred             hhHHHHHhhhcCCCEEEEEEeCCC---cccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--------------
Q 029920           72 TIRSYWRNYFEQTDGLVWVVDSSD---LRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--------------  134 (185)
Q Consensus        72 ~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--------------  134 (185)
                      .|..++...+..+|++++|+|+++   +.++..+.     .+..   .++|+++++||+|+.....              
T Consensus        83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~  154 (586)
T PRK04004         83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ  154 (586)
T ss_pred             HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence            999988888899999999999997   44444322     1222   3789999999999852110              


Q ss_pred             HHH-----------HHHhcCcccc---------cCccceEEEeecccCCCCHHHHHHHHHHHH
Q 029920          135 PTE-----------IAKVLNLEAM---------DKTRHWKIVGCSAYTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       135 ~~~-----------~~~~~~~~~~---------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (185)
                      ...           +...+....+         ......+++++||++|.|++++++.+....
T Consensus       155 ~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        155 SQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence            000           1111111111         112457899999999999999998886544

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.83  E-value=3.6e-19  Score=116.27  Aligned_cols=161  Identities=21%  Similarity=0.359  Sum_probs=119.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHh-CCCCc--ccccCcc-eEEEEEEEc---CeEEEEEEcCCchhh-HHHHHhhhcCCC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKIN-GEDTS--VISPTLG-FNIKTVTYQ---KYTLNIWDVGGQRTI-RSYWRNYFEQTD   85 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~-~~~~~--~~~~t~~-~~~~~~~~~---~~~~~~~D~~g~~~~-~~~~~~~~~~~d   85 (185)
                      .+..||+|+|..++|||++++.|. ++..+  .+.+|+. +....++.+   ...+.++||.|.... ..+-.+|+..+|
T Consensus         7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen    7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            345799999999999999999965 44443  4456665 333334332   258999999996555 567788999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH-HHHHHhcCcccccCccceEEEeecccCCC
Q 029920           86 GLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP-TEIAKVLNLEAMDKTRHWKIVGCSAYTGE  164 (185)
Q Consensus        86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (185)
                      ++++||+..+++||+...-.-..+-+......+|++|++||+|+.++... .+...     .++....+..+++++.+..
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~-----~Wa~rEkvkl~eVta~dR~  161 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQ-----IWAKREKVKLWEVTAMDRP  161 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHH-----HHHhhhheeEEEEEeccch
Confidence            99999999999999987654445544545567999999999999654222 12222     2333356788999999999


Q ss_pred             CHHHHHHHHHHHHhh
Q 029920          165 GLLEGFDWLVQDIAS  179 (185)
Q Consensus       165 ~i~~l~~~l~~~~~~  179 (185)
                      .+-+.|..+...+.+
T Consensus       162 sL~epf~~l~~rl~~  176 (198)
T KOG3883|consen  162 SLYEPFTYLASRLHQ  176 (198)
T ss_pred             hhhhHHHHHHHhccC
Confidence            999999999887753

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.83  E-value=1.8e-19  Score=145.72  Aligned_cols=158  Identities=20%  Similarity=0.154  Sum_probs=105.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcc------cccCcceEEEEEEE-cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSV------ISPTLGFNIKTVTY-QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~------~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      +-|+++|+.++|||||+++|.+.....      ...|+......+.. ++..+.+|||||++.+.......+..+|++++
T Consensus         1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            358999999999999999999754321      12333333333333 45678999999999998777788899999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEeecCCCCCCCCHHHHHHhcCcccc-cCccceEEEeecccCCCCHH
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGAS-LLILANKQDINGALTPTEIAKVLNLEAM-DKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      |+|+++... ....+.+ .++...   ++| +++|+||+|+.+..........+..... ......+++++||++|.|++
T Consensus        81 VVda~eg~~-~qT~ehl-~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~  155 (614)
T PRK10512         81 VVACDDGVM-AQTREHL-AILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGID  155 (614)
T ss_pred             EEECCCCCc-HHHHHHH-HHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCH
Confidence            999987321 2222222 223322   445 6899999999754332222222211100 01134689999999999999


Q ss_pred             HHHHHHHHHHhh
Q 029920          168 EGFDWLVQDIAS  179 (185)
Q Consensus       168 ~l~~~l~~~~~~  179 (185)
                      ++++.|.+....
T Consensus       156 ~L~~~L~~~~~~  167 (614)
T PRK10512        156 ALREHLLQLPER  167 (614)
T ss_pred             HHHHHHHHhhcc
Confidence            999999876544

>COG2262 HflX GTPases [General function prediction only]

Probab=99.83  E-value=8.3e-19  Score=131.86  Aligned_cols=161  Identities=22%  Similarity=0.217  Sum_probs=120.0

Q ss_pred             HhhccCceeEEEEEcCCCCChHHHHHHHhCCCC---cccccCcceEEEEEEEc-CeEEEEEEcCC---------chhhHH
Q 029920            9 KIKKKEKEMRILMVGLDNSGKTTIVLKINGEDT---SVISPTLGFNIKTVTYQ-KYTLNIWDVGG---------QRTIRS   75 (185)
Q Consensus         9 ~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~---~~~~~t~~~~~~~~~~~-~~~~~~~D~~g---------~~~~~~   75 (185)
                      +.+....-+.|+++|-.|+|||||+|+|++...   .....|...+.+.+... +..+.+-||.|         .+.|++
T Consensus       185 ~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFks  264 (411)
T COG2262         185 KKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKS  264 (411)
T ss_pred             hhhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHH
Confidence            344456678999999999999999999997665   35667888888888776 58999999999         344555


Q ss_pred             HHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEE
Q 029920           76 YWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKI  155 (185)
Q Consensus        76 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (185)
                      ..+. ...+|+++.|+|+++|.-.+ -......++.......+|+|+|.||+|+.............        . ...
T Consensus       265 TLEE-~~~aDlllhVVDaSdp~~~~-~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~--------~-~~~  333 (411)
T COG2262         265 TLEE-VKEADLLLHVVDASDPEILE-KLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERG--------S-PNP  333 (411)
T ss_pred             HHHH-hhcCCEEEEEeecCChhHHH-HHHHHHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhc--------C-CCe
Confidence            5444 35799999999999984433 33445666666666679999999999986653311111111        1 148


Q ss_pred             EeecccCCCCHHHHHHHHHHHHhhh
Q 029920          156 VGCSAYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       156 ~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (185)
                      +.+||++|.|++.|.+.|.+.+...
T Consensus       334 v~iSA~~~~gl~~L~~~i~~~l~~~  358 (411)
T COG2262         334 VFISAKTGEGLDLLRERIIELLSGL  358 (411)
T ss_pred             EEEEeccCcCHHHHHHHHHHHhhhc
Confidence            9999999999999999999988744

>PRK12735 elongation factor Tu; Reviewed

Probab=99.82  E-value=3.4e-19  Score=138.19  Aligned_cols=162  Identities=17%  Similarity=0.136  Sum_probs=105.0

Q ss_pred             hhccCceeEEEEEcCCCCChHHHHHHHhCC-------CCc------------ccccCcceEEEEEEEcCeEEEEEEcCCc
Q 029920           10 IKKKEKEMRILMVGLDNSGKTTIVLKINGE-------DTS------------VISPTLGFNIKTVTYQKYTLNIWDVGGQ   70 (185)
Q Consensus        10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~-------~~~------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~   70 (185)
                      ..+.++.++|+++|++++|||||+++|++.       ...            ...-|.......+..++.++.++||||+
T Consensus         6 ~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh   85 (396)
T PRK12735          6 FERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGH   85 (396)
T ss_pred             cCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCH
Confidence            345677899999999999999999999852       100            0111222223334446678999999999


Q ss_pred             hhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEE-EEeecCCCCCCCCHH-----HHHHhcCc
Q 029920           71 RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLL-ILANKQDINGALTPT-----EIAKVLNL  144 (185)
Q Consensus        71 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~i-vv~nK~D~~~~~~~~-----~~~~~~~~  144 (185)
                      +++.......+..+|++++|+|+.+... ....+.+....    ..++|.+ +++||+|+.+.....     ++...+..
T Consensus        86 ~~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~----~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~  160 (396)
T PRK12735         86 ADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLAR----QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSK  160 (396)
T ss_pred             HHHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHH----HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHH
Confidence            9888777777889999999999987422 22223333222    2257755 679999996432221     12222211


Q ss_pred             ccccCccceEEEeecccCCC----------CHHHHHHHHHHHH
Q 029920          145 EAMDKTRHWKIVGCSAYTGE----------GLLEGFDWLVQDI  177 (185)
Q Consensus       145 ~~~~~~~~~~~~~~Sa~~~~----------~i~~l~~~l~~~~  177 (185)
                      ..+.. ...+++++||.+|.          ++.++++.|.+.+
T Consensus       161 ~~~~~-~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~  202 (396)
T PRK12735        161 YDFPG-DDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI  202 (396)
T ss_pred             cCCCc-CceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence            11111 24789999999984          5778888877754

>PRK12736 elongation factor Tu; Reviewed

Probab=99.82  E-value=4.5e-19  Score=137.41  Aligned_cols=161  Identities=18%  Similarity=0.143  Sum_probs=105.6

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCC----------c---------ccccCcceEEEEEEEcCeEEEEEEcCCchh
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDT----------S---------VISPTLGFNIKTVTYQKYTLNIWDVGGQRT   72 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~----------~---------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~   72 (185)
                      +.+..++|+++|+.++|||||+++|++...          .         ....|.......+..++..+.++||||+++
T Consensus         8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~   87 (394)
T PRK12736          8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD   87 (394)
T ss_pred             cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH
Confidence            366789999999999999999999976311          0         111122232333444567899999999999


Q ss_pred             hHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEeecCCCCCCCCHH-----HHHHhcCccc
Q 029920           73 IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS-LLILANKQDINGALTPT-----EIAKVLNLEA  146 (185)
Q Consensus        73 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~-----~~~~~~~~~~  146 (185)
                      +.......+..+|++++|+|+.+... ....+.+.....    .++| +|+++||+|+.+.....     ++...+....
T Consensus        88 f~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~  162 (394)
T PRK12736         88 YVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence            88777777889999999999986422 222233333222    2577 67899999986432222     1222221111


Q ss_pred             ccCccceEEEeecccCCC--------CHHHHHHHHHHHHh
Q 029920          147 MDKTRHWKIVGCSAYTGE--------GLLEGFDWLVQDIA  178 (185)
Q Consensus       147 ~~~~~~~~~~~~Sa~~~~--------~i~~l~~~l~~~~~  178 (185)
                      +.. ...+++++||++|.        +++++++.+.+.+.
T Consensus       163 ~~~-~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        163 FPG-DDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             CCc-CCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            111 34789999999983        57888888877653

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.81  E-value=3.1e-19  Score=141.63  Aligned_cols=154  Identities=23%  Similarity=0.256  Sum_probs=109.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCeEEEEEEcCCchhh------HHHHHhhh--cC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKYTLNIWDVGGQRTI------RSYWRNYF--EQ   83 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~------~~~~~~~~--~~   83 (185)
                      +..+|+++|.||+|||||.|+|+|.+..   ..+-|.+-....+...+.+++++|+||.-+.      ....++++  ..
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~   81 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK   81 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence            3467999999999999999999998763   3344555555567778889999999993322      22334444  46


Q ss_pred             CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCC
Q 029920           84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTG  163 (185)
Q Consensus        84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (185)
                      .|+++-|+|+++.+..   .....++++.    +.|+++++|++|..+....+-..+     ++.+..++|++++||++|
T Consensus        82 ~D~ivnVvDAtnLeRn---LyltlQLlE~----g~p~ilaLNm~D~A~~~Gi~ID~~-----~L~~~LGvPVv~tvA~~g  149 (653)
T COG0370          82 PDLIVNVVDATNLERN---LYLTLQLLEL----GIPMILALNMIDEAKKRGIRIDIE-----KLSKLLGVPVVPTVAKRG  149 (653)
T ss_pred             CCEEEEEcccchHHHH---HHHHHHHHHc----CCCeEEEeccHhhHHhcCCcccHH-----HHHHHhCCCEEEEEeecC
Confidence            7999999999985432   2333344333    799999999999765433221111     222236789999999999


Q ss_pred             CCHHHHHHHHHHHHhhh
Q 029920          164 EGLLEGFDWLVQDIASR  180 (185)
Q Consensus       164 ~~i~~l~~~l~~~~~~~  180 (185)
                      .|++++...+.+...++
T Consensus       150 ~G~~~l~~~i~~~~~~~  166 (653)
T COG0370         150 EGLEELKRAIIELAESK  166 (653)
T ss_pred             CCHHHHHHHHHHhcccc
Confidence            99999999998765543

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.81  E-value=5.1e-19  Score=126.69  Aligned_cols=165  Identities=22%  Similarity=0.310  Sum_probs=108.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCc----ccccCcceEEEEEEE-cCeEEEEEEcCCchhhHH-----HHHhhhcCCCEE
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTS----VISPTLGFNIKTVTY-QKYTLNIWDVGGQRTIRS-----YWRNYFEQTDGL   87 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~----~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~-----~~~~~~~~~d~~   87 (185)
                      ||+++|+.+|||||+.+.+.++..+    ...+|...+...+.. ++..+++||.||+..+-.     .....+++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L   80 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL   80 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence            7999999999999999999887654    445788788777764 567999999999875543     356778999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhcc--ccCCCeEEEEeecCCCCCCCCHHHHHH----hcCcccccC-ccceEEEeecc
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEE--RLSGASLLILANKQDINGALTPTEIAK----VLNLEAMDK-TRHWKIVGCSA  160 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~~ivv~nK~D~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~Sa  160 (185)
                      |||+|+.+.+ +.....++...+...  ..++..+-|+++|+|+..+....+...    .+....... ...+.++.||.
T Consensus        81 IyV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI  159 (232)
T PF04670_consen   81 IYVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI  159 (232)
T ss_dssp             EEEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred             EEEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence            9999999543 444444555544432  356899999999999865433322221    111111111 12488999999


Q ss_pred             cCCCCHHHHHHHHHHHHhhhcccC
Q 029920          161 YTGEGLLEGFDWLVQDIASRIYLL  184 (185)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~~~~~~~  184 (185)
                      .+. .+.+.|..+++.+.++...+
T Consensus       160 ~D~-Sly~A~S~Ivq~LiP~~~~l  182 (232)
T PF04670_consen  160 WDE-SLYEAWSKIVQKLIPNLSTL  182 (232)
T ss_dssp             TST-HHHHHHHHHHHTTSTTHCCC
T ss_pred             cCc-HHHHHHHHHHHHHcccHHHH
Confidence            995 79999999999887776654

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.80  E-value=8.7e-19  Score=127.45  Aligned_cols=152  Identities=28%  Similarity=0.361  Sum_probs=106.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCe-EEEEEEcCCchh-------hHHHHHhhhcCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKY-TLNIWDVGGQRT-------IRSYWRNYFEQT   84 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~-------~~~~~~~~~~~~   84 (185)
                      ...|.++|.||+|||||++++.+.+..   ....|.......+.+++. ++.+-|.||.-+       +.-..-.+++.|
T Consensus       196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence            346899999999999999999876652   222344444445666654 499999999432       334455678899


Q ss_pred             CEEEEEEeCCCc---ccHHHHHHHHHHHHhc-cccCCCeEEEEeecCCCCCCCCH--HHHHHhcCcccccCccceEEEee
Q 029920           85 DGLVWVVDSSDL---RRLDDCKMELDNLLKE-ERLSGASLLILANKQDINGALTP--TEIAKVLNLEAMDKTRHWKIVGC  158 (185)
Q Consensus        85 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~-~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  158 (185)
                      +.++||+|++.+   ..++.....+.++-.+ ....+.|.++|+||+|+.+.+..  +++...+        .+..++++
T Consensus       276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~l--------q~~~V~pv  347 (366)
T KOG1489|consen  276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRL--------QNPHVVPV  347 (366)
T ss_pred             ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHc--------CCCcEEEe
Confidence            999999999987   6666655544444332 23457899999999998643222  2333322        22368999


Q ss_pred             cccCCCCHHHHHHHHHH
Q 029920          159 SAYTGEGLLEGFDWLVQ  175 (185)
Q Consensus       159 Sa~~~~~i~~l~~~l~~  175 (185)
                      ||+.+++++++++.|..
T Consensus       348 sA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  348 SAKSGEGLEELLNGLRE  364 (366)
T ss_pred             eeccccchHHHHHHHhh
Confidence            99999999999988764

>CHL00071 tufA elongation factor Tu

Probab=99.80  E-value=1.3e-18  Score=135.41  Aligned_cols=148  Identities=20%  Similarity=0.156  Sum_probs=97.0

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCc---------------ccccCcceE----EEEEEEcCeEEEEEEcCCchh
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS---------------VISPTLGFN----IKTVTYQKYTLNIWDVGGQRT   72 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~---------------~~~~t~~~~----~~~~~~~~~~~~~~D~~g~~~   72 (185)
                      ..+..++|+++|++++|||||+++|++....               ......+.+    ...+..++.++.++||||+..
T Consensus         8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~   87 (409)
T CHL00071          8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD   87 (409)
T ss_pred             CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence            3567899999999999999999999864110               000112222    223445678899999999998


Q ss_pred             hHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEeecCCCCCCCCHH-----HHHHhcCccc
Q 029920           73 IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS-LLILANKQDINGALTPT-----EIAKVLNLEA  146 (185)
Q Consensus        73 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~-----~~~~~~~~~~  146 (185)
                      +.......+..+|++++|+|+...-. ....+.+... ..   .++| +|+++||+|+.+.....     ++...+....
T Consensus        88 ~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~-~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~  162 (409)
T CHL00071         88 YVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLA-KQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD  162 (409)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            88777788899999999999986422 2222333322 22   2577 77899999997543221     2222222211


Q ss_pred             ccCccceEEEeecccCCCC
Q 029920          147 MDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus       147 ~~~~~~~~~~~~Sa~~~~~  165 (185)
                      +.. ..+|++++||.+|.|
T Consensus       163 ~~~-~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        163 FPG-DDIPIVSGSALLALE  180 (409)
T ss_pred             CCC-CcceEEEcchhhccc
Confidence            111 357899999999874

>PLN03126 Elongation factor Tu; Provisional

Probab=99.80  E-value=2.2e-18  Score=135.69  Aligned_cols=151  Identities=19%  Similarity=0.149  Sum_probs=99.9

Q ss_pred             HhhccCceeEEEEEcCCCCChHHHHHHHhCCCCc---------------c----cccCcceEEEEEEEcCeEEEEEEcCC
Q 029920            9 KIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTS---------------V----ISPTLGFNIKTVTYQKYTLNIWDVGG   69 (185)
Q Consensus         9 ~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~---------------~----~~~t~~~~~~~~~~~~~~~~~~D~~g   69 (185)
                      ++...++.++|+++|++++|||||+++|.+....               .    ..-|.......+..++..+.++|+||
T Consensus        74 ~~~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPG  153 (478)
T PLN03126         74 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPG  153 (478)
T ss_pred             hhhccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCC
Confidence            3444677899999999999999999999852110               0    11122223334556778999999999


Q ss_pred             chhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEeecCCCCCCCCH-H----HHHHhcC
Q 029920           70 QRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS-LLILANKQDINGALTP-T----EIAKVLN  143 (185)
Q Consensus        70 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~-~----~~~~~~~  143 (185)
                      ++.+.......+..+|++++|+|+.+... ....+.+.....    .++| +++++||+|+.+.... +    ++...+.
T Consensus       154 h~~f~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~  228 (478)
T PLN03126        154 HADYVKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVRELLS  228 (478)
T ss_pred             HHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHH
Confidence            99998888888889999999999987432 222333333222    2577 7889999998753221 1    1222222


Q ss_pred             cccccCccceEEEeecccCCCC
Q 029920          144 LEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus       144 ~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      ...+.. ...+++++|+.++.|
T Consensus       229 ~~g~~~-~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        229 SYEFPG-DDIPIISGSALLALE  249 (478)
T ss_pred             hcCCCc-CcceEEEEEcccccc
Confidence            211222 468999999998853

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.80  E-value=6.9e-18  Score=124.81  Aligned_cols=110  Identities=19%  Similarity=0.207  Sum_probs=80.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCc--c-------------------cccCcceEEEEEEEcCeEEEEEEcCCchhhHHH
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTS--V-------------------ISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSY   76 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~--~-------------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   76 (185)
                      +|+++|++|+|||||+++|......  .                   ...+.......+.+++..+++|||||+..+...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            5899999999999999998643211  0                   012233344556778899999999999988888


Q ss_pred             HHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           77 WRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        77 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      +..++..+|++++|+|+++...... ...+...    ...++|.++++||+|+...
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~----~~~~~p~iivvNK~D~~~~  131 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGT-EKLWEFA----DEAGIPRIIFINKMDRERA  131 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHH----HHcCCCEEEEEECCccCCC
Confidence            8889999999999999997544332 2222322    2236899999999998653

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.80  E-value=5.8e-18  Score=123.96  Aligned_cols=155  Identities=18%  Similarity=0.156  Sum_probs=114.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCeEEEEEEcCCc-----hhhHHH---HHhhh-c
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKYTLNIWDVGGQ-----RTIRSY---WRNYF-E   82 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~-----~~~~~~---~~~~~-~   82 (185)
                      ..++|+|.|.||+|||||++.+++.+..   ....|.+.....++.+...++++||||.     ++++..   ....+ .
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h  246 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRH  246 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence            5689999999999999999999998774   4456888889999999999999999992     122211   11122 2


Q ss_pred             CCCEEEEEEeCCC--cccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecc
Q 029920           83 QTDGLVWVVDSSD--LRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSA  160 (185)
Q Consensus        83 ~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (185)
                      -.++++|++|.+.  ..+.+.....+..+....   +.|+++|+||+|..+....+++...+....     ......+++
T Consensus       247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~-----~~~~~~~~~  318 (346)
T COG1084         247 LAGVILFLFDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKIDIADEEKLEEIEASVLEEG-----GEEPLKISA  318 (346)
T ss_pred             hcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEecccccchhHHHHHHHHHHhhc-----cccccceee
Confidence            3588999999985  567777777777776654   489999999999987766666665544322     222567888


Q ss_pred             cCCCCHHHHHHHHHHHH
Q 029920          161 YTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       161 ~~~~~i~~l~~~l~~~~  177 (185)
                      ..+.+++.+-..+....
T Consensus       319 ~~~~~~d~~~~~v~~~a  335 (346)
T COG1084         319 TKGCGLDKLREEVRKTA  335 (346)
T ss_pred             eehhhHHHHHHHHHHHh
Confidence            88888888877776654

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.80  E-value=4.2e-18  Score=131.84  Aligned_cols=158  Identities=20%  Similarity=0.189  Sum_probs=113.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccc---cCcceEEEEEEE---cCeEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVIS---PTLGFNIKTVTY---QKYTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~---~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      .+++-|+++|+-.-|||||+..+.+.......   -|-.+.-..+..   ....+.++||||++.|..++.....-+|++
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa   82 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA   82 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence            45678999999999999999999887774322   233333334444   346899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccc---cCccceEEEeecccCCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAM---DKTRHWKIVGCSAYTGE  164 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Sa~~~~  164 (185)
                      +||+|++|.-.-+.     .+.+.+....+.|++|++||+|+.+. ++......+....+   .......++++||++|.
T Consensus        83 ILVVa~dDGv~pQT-----iEAI~hak~a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~  156 (509)
T COG0532          83 ILVVAADDGVMPQT-----IEAINHAKAAGVPIVVAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE  156 (509)
T ss_pred             EEEEEccCCcchhH-----HHHHHHHHHCCCCEEEEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence            99999998432222     11122223448999999999999865 34444433332221   11245789999999999


Q ss_pred             CHHHHHHHHHHHH
Q 029920          165 GLLEGFDWLVQDI  177 (185)
Q Consensus       165 ~i~~l~~~l~~~~  177 (185)
                      |+++|+..+.-..
T Consensus       157 Gi~eLL~~ill~a  169 (509)
T COG0532         157 GIDELLELILLLA  169 (509)
T ss_pred             CHHHHHHHHHHHH
Confidence            9999998876543

>PRK00049 elongation factor Tu; Reviewed

Probab=99.79  E-value=3.7e-18  Score=132.32  Aligned_cols=161  Identities=18%  Similarity=0.147  Sum_probs=104.7

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHhCCCCc-------------------ccccCcceEEEEEEEcCeEEEEEEcCCch
Q 029920           11 KKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-------------------VISPTLGFNIKTVTYQKYTLNIWDVGGQR   71 (185)
Q Consensus        11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~   71 (185)
                      .+.+..++|+++|+.++|||||+++|++....                   ....|.......+..++.++.++||||+.
T Consensus         7 ~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~   86 (396)
T PRK00049          7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA   86 (396)
T ss_pred             cCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH
Confidence            34577899999999999999999999762110                   11112222233344467789999999999


Q ss_pred             hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEE-EEeecCCCCCCCCH-H----HHHHhcCcc
Q 029920           72 TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLL-ILANKQDINGALTP-T----EIAKVLNLE  145 (185)
Q Consensus        72 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~i-vv~nK~D~~~~~~~-~----~~~~~~~~~  145 (185)
                      ++.......+..+|++++|+|+.+... ......+... ..   .++|.+ +++||+|+.+.... +    ++...+...
T Consensus        87 ~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~-~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~  161 (396)
T PRK00049         87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY  161 (396)
T ss_pred             HHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHH-HH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhc
Confidence            888777777899999999999987422 2222333322 22   257875 68999998643221 1    222222211


Q ss_pred             cccCccceEEEeecccCCC----------CHHHHHHHHHHHH
Q 029920          146 AMDKTRHWKIVGCSAYTGE----------GLLEGFDWLVQDI  177 (185)
Q Consensus       146 ~~~~~~~~~~~~~Sa~~~~----------~i~~l~~~l~~~~  177 (185)
                      .+. ....+++++||+++.          ++.++++.|.+.+
T Consensus       162 ~~~-~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~  202 (396)
T PRK00049        162 DFP-GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI  202 (396)
T ss_pred             CCC-ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence            111 145789999999875          4677777777654

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.79  E-value=5.3e-18  Score=124.97  Aligned_cols=110  Identities=20%  Similarity=0.131  Sum_probs=80.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC--Cc-------------------ccccCcceEEEEEEEcCeEEEEEEcCCchhhHHH
Q 029920           18 RILMVGLDNSGKTTIVLKINGED--TS-------------------VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSY   76 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~--~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   76 (185)
                      +|+++|++|+|||||+++|....  ..                   ...-|.......+.+++.++.++||||+..+...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            58999999999999999985311  10                   0111333444567788999999999999988888


Q ss_pred             HHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           77 WRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        77 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      +..+++.+|++++|+|+.+...-. ....+...    ...++|+++++||+|+...
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~----~~~~~p~ivviNK~D~~~a  131 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQA----DRYNVPRIAFVNKMDRTGA  131 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHH----HHcCCCEEEEEECCCCCCC
Confidence            899999999999999998743222 12222222    2236899999999998754

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=1e-18  Score=118.08  Aligned_cols=158  Identities=18%  Similarity=0.342  Sum_probs=129.2

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEEEEE---c-CeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKTVTY---Q-KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~~~~---~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      ..++++++|+.|.||||++++.....+. .+.+|.+........   . ...|..|||+|++.+......|+-+....++
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii   88 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII   88 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence            4789999999999999999998888886 577888876665433   2 3899999999999999888888888999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (185)
                      ++|++.+-++.+...|.+++.+...  ++|+++++||.|.........     .. .+....+..++++||+.+.|.+.-
T Consensus        89 mFdVtsr~t~~n~~rwhrd~~rv~~--NiPiv~cGNKvDi~~r~~k~k-----~v-~~~rkknl~y~~iSaksn~NfekP  160 (216)
T KOG0096|consen   89 MFDVTSRFTYKNVPRWHRDLVRVRE--NIPIVLCGNKVDIKARKVKAK-----PV-SFHRKKNLQYYEISAKSNYNFERP  160 (216)
T ss_pred             EeeeeehhhhhcchHHHHHHHHHhc--CCCeeeeccceeccccccccc-----cc-eeeecccceeEEeecccccccccc
Confidence            9999999999999999999988654  799999999999765431111     11 111226778999999999999999


Q ss_pred             HHHHHHHHhhh
Q 029920          170 FDWLVQDIASR  180 (185)
Q Consensus       170 ~~~l~~~~~~~  180 (185)
                      |-|+.+.+...
T Consensus       161 Fl~LarKl~G~  171 (216)
T KOG0096|consen  161 FLWLARKLTGD  171 (216)
T ss_pred             hHHHhhhhcCC
Confidence            99999887543

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.78  E-value=6.3e-18  Score=131.16  Aligned_cols=147  Identities=17%  Similarity=0.126  Sum_probs=94.2

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCC------C------C-c------ccccCcceEEEEEEEcCeEEEEEEcCCchh
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGE------D------T-S------VISPTLGFNIKTVTYQKYTLNIWDVGGQRT   72 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~------~------~-~------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~   72 (185)
                      +.++.++|+++|+.++|||||+++|.+.      .      . .      ....|.......+..++..+.++||||++.
T Consensus         8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~   87 (394)
T TIGR00485         8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD   87 (394)
T ss_pred             CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence            3567899999999999999999999732      0      0 0      011233333333444667899999999999


Q ss_pred             hHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeE-EEEeecCCCCCCCCHH-----HHHHhcCccc
Q 029920           73 IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL-LILANKQDINGALTPT-----EIAKVLNLEA  146 (185)
Q Consensus        73 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-ivv~nK~D~~~~~~~~-----~~~~~~~~~~  146 (185)
                      |..........+|++++|+|+.+... ....+.+......    ++|. ++++||+|+.+.....     ++...+....
T Consensus        88 f~~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~~~----gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~  162 (394)
T TIGR00485        88 YVKNMITGAAQMDGAILVVSATDGPM-PQTREHILLARQV----GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence            88777777788999999999987322 2222333333222    5665 4789999987532211     1222222111


Q ss_pred             ccCccceEEEeecccCCC
Q 029920          147 MDKTRHWKIVGCSAYTGE  164 (185)
Q Consensus       147 ~~~~~~~~~~~~Sa~~~~  164 (185)
                      ... ..++++++||.++.
T Consensus       163 ~~~-~~~~ii~vSa~~g~  179 (394)
T TIGR00485       163 FPG-DDTPIIRGSALKAL  179 (394)
T ss_pred             CCc-cCccEEECcccccc
Confidence            111 23789999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04169 RF3 RF3 subfamily

Probab=99.78  E-value=1e-17  Score=123.37  Aligned_cols=113  Identities=18%  Similarity=0.220  Sum_probs=81.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCC--cc-----------------------cccCcceEEEEEEEcCeEEEEEEcCCch
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDT--SV-----------------------ISPTLGFNIKTVTYQKYTLNIWDVGGQR   71 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~--~~-----------------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~   71 (185)
                      .+|+++|++|+|||||+++|+...-  ..                       ...+.......+.+++..+++|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            5799999999999999999863211  00                       0112223444677889999999999999


Q ss_pred             hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC
Q 029920           72 TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT  134 (185)
Q Consensus        72 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~  134 (185)
                      .+......+++.+|++++|+|+++.... ....++.. .   ...++|+++++||+|+.....
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~-~---~~~~~P~iivvNK~D~~~a~~  140 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEV-C---RLRGIPIITFINKLDREGRDP  140 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHH-H---HhcCCCEEEEEECCccCCCCH
Confidence            8888778888999999999999875322 22222222 2   223789999999999876543

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.78  E-value=7.8e-18  Score=122.99  Aligned_cols=155  Identities=21%  Similarity=0.182  Sum_probs=109.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCeEEEEEEcCCch-------hhHHHHHhhhc
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKYTLNIWDVGGQR-------TIRSYWRNYFE   82 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~-------~~~~~~~~~~~   82 (185)
                      ++..-+++++|+|++|||||++.|++-+..   ....|.......+.+++.+++++|+||.-       ..........+
T Consensus        60 KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R  139 (365)
T COG1163          60 KSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVAR  139 (365)
T ss_pred             ccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeec
Confidence            456679999999999999999999987653   23345555566688999999999999832       12344556678


Q ss_pred             CCCEEEEEEeCCCccc-HHHHHHHH----------------------------------------HHHHhcc--------
Q 029920           83 QTDGLVWVVDSSDLRR-LDDCKMEL----------------------------------------DNLLKEE--------  113 (185)
Q Consensus        83 ~~d~~i~v~d~~~~~s-~~~~~~~~----------------------------------------~~~~~~~--------  113 (185)
                      .||++++|+|+..... .+.+...+                                        ..++...        
T Consensus       140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~  219 (365)
T COG1163         140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL  219 (365)
T ss_pred             cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence            9999999999985431 11111111                                        1111110        


Q ss_pred             ----------------ccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHH
Q 029920          114 ----------------RLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       114 ----------------~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (185)
                                      +...+|.++|.||+|+...+....+....           ..+.+||..+.|++++.+.|.+.+
T Consensus       220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~-----------~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP-----------NSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             EecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc-----------ceEEEecccCCCHHHHHHHHHHhh
Confidence                            01147899999999997754444443322           579999999999999999999886


Q ss_pred             h
Q 029920          178 A  178 (185)
Q Consensus       178 ~  178 (185)
                      .
T Consensus       289 ~  289 (365)
T COG1163         289 G  289 (365)
T ss_pred             C
Confidence            3

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.78  E-value=1e-18  Score=120.16  Aligned_cols=128  Identities=29%  Similarity=0.421  Sum_probs=85.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEE---cCeEEEEEEcCCchhhHHHHHhh---hcCCCEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTY---QKYTLNIWDVGGQRTIRSYWRNY---FEQTDGLV   88 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~---~~~~d~~i   88 (185)
                      +...|+++|+.|+|||+|..+|..+............. ....   .+..+.++|+||+++.+......   ...+.++|
T Consensus         2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II   80 (181)
T PF09439_consen    2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII   80 (181)
T ss_dssp             ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred             CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence            34679999999999999999999886654444433222 2222   34689999999999987655544   78899999


Q ss_pred             EEEeCCC-cccHHHHHHHHHHHHhccc--cCCCeEEEEeecCCCCCCCCHHHHHHhcC
Q 029920           89 WVVDSSD-LRRLDDCKMELDNLLKEER--LSGASLLILANKQDINGALTPTEIAKVLN  143 (185)
Q Consensus        89 ~v~d~~~-~~s~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~  143 (185)
                      ||+|.+. ........+++..++....  ...+|++++.||.|+..+.....+...+.
T Consensus        81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE  138 (181)
T PF09439_consen   81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLE  138 (181)
T ss_dssp             EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHH
T ss_pred             EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHH
Confidence            9999974 5667778888888876543  34689999999999988766665555443

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd04167 Snu114p Snu114p subfamily

Probab=99.78  E-value=2.2e-18  Score=123.34  Aligned_cols=108  Identities=19%  Similarity=0.271  Sum_probs=76.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCccc------------c------cCcceE----EEEEEE-----cCeEEEEEEcCCc
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVI------------S------PTLGFN----IKTVTY-----QKYTLNIWDVGGQ   70 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~------------~------~t~~~~----~~~~~~-----~~~~~~~~D~~g~   70 (185)
                      +|+++|+.|+|||||+++|+.......            .      ...+.+    ...+.+     ....+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            689999999999999999976433211            0      011111    111222     2478999999999


Q ss_pred             hhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC
Q 029920           71 RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN  130 (185)
Q Consensus        71 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  130 (185)
                      ..+......++..+|++++|+|+.+..+... ..++.....    .+.|+++++||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence            9998888888999999999999987655432 222333222    258999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.78  E-value=2.9e-17  Score=130.87  Aligned_cols=115  Identities=17%  Similarity=0.225  Sum_probs=82.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhC--CCCcc------------c-----------ccCcceEEEEEEEcCeEEEEEEc
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKING--EDTSV------------I-----------SPTLGFNIKTVTYQKYTLNIWDV   67 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~--~~~~~------------~-----------~~t~~~~~~~~~~~~~~~~~~D~   67 (185)
                      ..+..+|+++|++|+|||||.++|..  +....            .           ..+.......+.+++..+++|||
T Consensus         7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT   86 (526)
T PRK00741          7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT   86 (526)
T ss_pred             hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence            45677999999999999999999852  11100            0           01122233456778899999999


Q ss_pred             CCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           68 GGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        68 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      ||+..+......+++.+|++++|+|+++.... .....+..    ....++|+++++||+|+...
T Consensus        87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~----~~~~~iPiiv~iNK~D~~~a  146 (526)
T PRK00741         87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEV----CRLRDTPIFTFINKLDRDGR  146 (526)
T ss_pred             CCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHH----HHhcCCCEEEEEECCccccc
Confidence            99999988888889999999999999874322 22233322    22347999999999998654

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.77  E-value=4.7e-18  Score=133.24  Aligned_cols=152  Identities=18%  Similarity=0.206  Sum_probs=100.9

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCC--CCc--------------------------------ccccCcceEEEEEEE
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGE--DTS--------------------------------VISPTLGFNIKTVTY   57 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~   57 (185)
                      ..+..++|+++|+.++|||||+.+|+..  ...                                ....|.......+++
T Consensus         3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~   82 (446)
T PTZ00141          3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET   82 (446)
T ss_pred             CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence            3567899999999999999999988541  100                                011133334445667


Q ss_pred             cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc---cH---HHHHHHHHHHHhccccCCCe-EEEEeecCCCC
Q 029920           58 QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR---RL---DDCKMELDNLLKEERLSGAS-LLILANKQDIN  130 (185)
Q Consensus        58 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~  130 (185)
                      ++..+.++||||+++|.......+..+|++++|+|+.+..   .+   ....+.+... ..   .++| +|+++||+|..
T Consensus        83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~-~~---~gi~~iiv~vNKmD~~  158 (446)
T PTZ00141         83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLA-FT---LGVKQMIVCINKMDDK  158 (446)
T ss_pred             CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH-HH---cCCCeEEEEEEccccc
Confidence            7889999999999999988888899999999999998642   11   1223333322 22   2555 78999999953


Q ss_pred             C----CCCHHHHH----HhcCcccccCccceEEEeecccCCCCHHH
Q 029920          131 G----ALTPTEIA----KVLNLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus       131 ~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      .    ....+++.    ..+....+.. ..++++++|+.+|.|+.+
T Consensus       159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~-~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        159 TVNYSQERYDEIKKEVSAYLKKVGYNP-EKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             cchhhHHHHHHHHHHHHHHHHhcCCCc-ccceEEEeecccCCCccc
Confidence            2    11222222    2222211211 358999999999999864

>PRK13351 elongation factor G; Reviewed

Probab=99.77  E-value=1.4e-17  Score=137.39  Aligned_cols=115  Identities=20%  Similarity=0.124  Sum_probs=87.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCC--------------c-------ccccCcceEEEEEEEcCeEEEEEEcCCch
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDT--------------S-------VISPTLGFNIKTVTYQKYTLNIWDVGGQR   71 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~--------------~-------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~   71 (185)
                      .++..+|+++|+.|+|||||+++|....-              .       ....|.......+.+++..+.+|||||+.
T Consensus         5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~   84 (687)
T PRK13351          5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI   84 (687)
T ss_pred             cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence            34567999999999999999999864211              0       12234445555678889999999999999


Q ss_pred             hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           72 TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        72 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      ++...+..+++.+|++++|+|+++....... ..+....    ..++|+++++||+|+...
T Consensus        85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~----~~~~p~iiviNK~D~~~~  140 (687)
T PRK13351         85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQAD----RYGIPRLIFINKMDRVGA  140 (687)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHH----hcCCCEEEEEECCCCCCC
Confidence            9988899999999999999999986655432 2233322    236899999999998764

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.77  E-value=4.7e-18  Score=120.23  Aligned_cols=157  Identities=13%  Similarity=0.200  Sum_probs=94.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcc---eEEE--EEEE-cCeEEEEEEcCCchhhHHHH-----HhhhcC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLG---FNIK--TVTY-QKYTLNIWDVGGQRTIRSYW-----RNYFEQ   83 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~---~~~~--~~~~-~~~~~~~~D~~g~~~~~~~~-----~~~~~~   83 (185)
                      +++|+++|.+|+|||||+|+|++..... ...+.+   .+..  .+.. ....+.+|||||........     ...+..
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            4789999999999999999999865432 212212   1111  1111 12468999999965322212     222567


Q ss_pred             CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC---------HHHHHHhcCcc---ccc--C
Q 029920           84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT---------PTEIAKVLNLE---AMD--K  149 (185)
Q Consensus        84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~---------~~~~~~~~~~~---~~~--~  149 (185)
                      +|+++++.+.    ++......+...+...   +.|+++|+||+|+.....         .++..+.+...   ...  .
T Consensus        81 ~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~  153 (197)
T cd04104          81 YDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG  153 (197)
T ss_pred             cCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence            8998887542    2333333333333332   689999999999853211         11212111110   010  1


Q ss_pred             ccceEEEeeccc--CCCCHHHHHHHHHHHHhh
Q 029920          150 TRHWKIVGCSAY--TGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       150 ~~~~~~~~~Sa~--~~~~i~~l~~~l~~~~~~  179 (185)
                      ....++|.+|+.  .+.|+..+.+.+...+.+
T Consensus       154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~  185 (197)
T cd04104         154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA  185 (197)
T ss_pred             CCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence            234578999999  579999999999998864

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.77  E-value=7e-18  Score=133.19  Aligned_cols=153  Identities=15%  Similarity=0.138  Sum_probs=98.4

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcc--------------c----------------------ccCcceEEEEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSV--------------I----------------------SPTLGFNIKTVT   56 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~--------------~----------------------~~t~~~~~~~~~   56 (185)
                      .+..++|+++|+.++|||||+++|+...-..              .                      .-|+......+.
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            5778999999999999999999985432110              0                      012233344456


Q ss_pred             EcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--
Q 029920           57 YQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--  134 (185)
Q Consensus        57 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--  134 (185)
                      .++.++.++||||++.+.......+..+|++++|+|+.....-. .... ..+.....  ..|+++++||+|+.+...  
T Consensus       104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~q-t~~~-~~l~~~lg--~~~iIvvvNKiD~~~~~~~~  179 (474)
T PRK05124        104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQ-TRRH-SFIATLLG--IKHLVVAVNKMDLVDYSEEV  179 (474)
T ss_pred             cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcccc-chHH-HHHHHHhC--CCceEEEEEeeccccchhHH
Confidence            67789999999999988766666679999999999998642111 1111 11122111  257899999999874321  


Q ss_pred             HHHHHHhcCc--ccccCccceEEEeecccCCCCHHHH
Q 029920          135 PTEIAKVLNL--EAMDKTRHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus       135 ~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (185)
                      ..++...+..  .........+++++||++|.|++++
T Consensus       180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            1222222211  0111113578999999999999764

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.77  E-value=3.7e-17  Score=106.14  Aligned_cols=103  Identities=22%  Similarity=0.341  Sum_probs=71.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcccc----cCcceEEEEEEEcCeEEEEEEcCCchhh---------HHHHHhhhcCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVIS----PTLGFNIKTVTYQKYTLNIWDVGGQRTI---------RSYWRNYFEQT   84 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~~~   84 (185)
                      +|+|+|.+|+|||||+|+|++......+    .|.......+.+++..+.++||||....         .......+..+
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~   80 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS   80 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence            6899999999999999999986543222    3444445566778899999999995321         11233344889


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeec
Q 029920           85 DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANK  126 (185)
Q Consensus        85 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK  126 (185)
                      |++++|+|+.++.. +.....+..+    . .+.|+++|+||
T Consensus        81 d~ii~vv~~~~~~~-~~~~~~~~~l----~-~~~~~i~v~NK  116 (116)
T PF01926_consen   81 DLIIYVVDASNPIT-EDDKNILREL----K-NKKPIILVLNK  116 (116)
T ss_dssp             SEEEEEEETTSHSH-HHHHHHHHHH----H-TTSEEEEEEES
T ss_pred             CEEEEEEECCCCCC-HHHHHHHHHH----h-cCCCEEEEEcC
Confidence            99999999877321 1122222222    2 47999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.77  E-value=7.8e-18  Score=130.95  Aligned_cols=147  Identities=16%  Similarity=0.144  Sum_probs=95.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc------------------------------------ccccCcceEEEEEEEcCe
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS------------------------------------VISPTLGFNIKTVTYQKY   60 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~------------------------------------~~~~t~~~~~~~~~~~~~   60 (185)
                      ++|+++|+.++|||||+++|+...-.                                    ...-|.......+..++.
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            58999999999999999998532110                                    001123344445566778


Q ss_pred             EEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH--HHH
Q 029920           61 TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP--TEI  138 (185)
Q Consensus        61 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~--~~~  138 (185)
                      .+.++||||++.|.......+..+|++++|+|+.....-+ ..+.+. +.....  ..++++++||+|+.+....  .++
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~q-t~~~~~-~~~~~~--~~~iivviNK~D~~~~~~~~~~~i  156 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ-TRRHSY-IASLLG--IRHVVLAVNKMDLVDYDEEVFENI  156 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccc-cHHHHH-HHHHcC--CCcEEEEEEecccccchHHHHHHH
Confidence            9999999999998777777789999999999998643211 111111 222211  3468999999998653211  112


Q ss_pred             HHhcCc--ccccCccceEEEeecccCCCCHHH
Q 029920          139 AKVLNL--EAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus       139 ~~~~~~--~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      ...+..  .... ....+++++||++|.|+++
T Consensus       157 ~~~~~~~~~~~~-~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       157 KKDYLAFAEQLG-FRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHcC-CCCccEEEeecccCCCCcc
Confidence            222210  0111 1356899999999999975

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PLN03127 Elongation factor Tu; Provisional

Probab=99.77  E-value=1.2e-17  Score=130.77  Aligned_cols=159  Identities=19%  Similarity=0.178  Sum_probs=102.2

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC------CCc-------------ccccCcceEEEEEEEcCeEEEEEEcCCchhh
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE------DTS-------------VISPTLGFNIKTVTYQKYTLNIWDVGGQRTI   73 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~------~~~-------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~   73 (185)
                      .+..++|+++|+.++|||||+++|.+.      ...             ....|.......+..++.++.++||||+..+
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f  137 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY  137 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence            567899999999999999999999632      110             0112333334445556789999999999988


Q ss_pred             HHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEeecCCCCCCCCHHH-HH----HhcCcccc
Q 029920           74 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS-LLILANKQDINGALTPTE-IA----KVLNLEAM  147 (185)
Q Consensus        74 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~~-~~----~~~~~~~~  147 (185)
                      .......+..+|++++|+|+.+... ....+.+... ..   .++| +|+++||+|+.+.....+ +.    ..+....+
T Consensus       138 ~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~-~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~  212 (447)
T PLN03127        138 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLA-RQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF  212 (447)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHH-HH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence            7777777788999999999986432 2222222222 22   2678 578999999875322111 11    11111111


Q ss_pred             cCccceEEEeeccc---CCCC-------HHHHHHHHHHHH
Q 029920          148 DKTRHWKIVGCSAY---TGEG-------LLEGFDWLVQDI  177 (185)
Q Consensus       148 ~~~~~~~~~~~Sa~---~~~~-------i~~l~~~l~~~~  177 (185)
                      .. ..+|++++||.   ++.|       +.++++.+.+.+
T Consensus       213 ~~-~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        213 PG-DEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             CC-CcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence            11 35788998876   4555       678888887765

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.77  E-value=1.3e-17  Score=130.82  Aligned_cols=150  Identities=18%  Similarity=0.209  Sum_probs=99.6

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCC--c--------------------------------ccccCcceEEEEEEEc
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDT--S--------------------------------VISPTLGFNIKTVTYQ   58 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~--~--------------------------------~~~~t~~~~~~~~~~~   58 (185)
                      .++.++|+++|+.++|||||+.+|+...-  .                                ...-|+......++.+
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~   83 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT   83 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence            56789999999999999999988742110  0                                0011333444456667


Q ss_pred             CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHH-------HHHHHHHHHHhccccCCC-eEEEEeecCCCC
Q 029920           59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLD-------DCKMELDNLLKEERLSGA-SLLILANKQDIN  130 (185)
Q Consensus        59 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~-~~ivv~nK~D~~  130 (185)
                      +..+.++|+||+++|.......+..+|++++|+|+++. .|+       ...+.+... .   ..++ ++|+++||+|+.
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~-~---~~gi~~iIV~vNKmD~~  158 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLA-F---TLGVKQMICCCNKMDAT  158 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHH-H---HcCCCcEEEEEEcccCC
Confidence            88999999999999999999999999999999999872 222       223322222 1   2256 578899999976


Q ss_pred             CCC-C-------HHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920          131 GAL-T-------PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus       131 ~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      +.. .       .+++...+....+.. ..++++++||.+|.|+.+
T Consensus       159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~-~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        159 TPKYSKARYDEIVKEVSSYLKKVGYNP-DKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHcCCCc-ccceEEEEeccccccccc
Confidence            221 1       112222222211111 357899999999999853

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.76  E-value=1.2e-17  Score=127.85  Aligned_cols=166  Identities=22%  Similarity=0.273  Sum_probs=113.0

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEE----EEEcCeEEEEEEcCCchh--------hH-HHHH
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT----VTYQKYTLNIWDVGGQRT--------IR-SYWR   78 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~--------~~-~~~~   78 (185)
                      ..+..++|+++|+||+|||||+|+|.+......+|..|++...    ++.+++++.+.||+|..+        .. ...+
T Consensus       264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~  343 (531)
T KOG1191|consen  264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERAR  343 (531)
T ss_pred             HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHH
Confidence            3556699999999999999999999999999988877766554    567899999999999654        11 1234


Q ss_pred             hhhcCCCEEEEEEeCC--CcccHHHHHHHHHHHHhcc-----ccCCCeEEEEeecCCCCCCCCHHHH-HHhcCcccccCc
Q 029920           79 NYFEQTDGLVWVVDSS--DLRRLDDCKMELDNLLKEE-----RLSGASLLILANKQDINGALTPTEI-AKVLNLEAMDKT  150 (185)
Q Consensus        79 ~~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~-----~~~~~~~ivv~nK~D~~~~~~~~~~-~~~~~~~~~~~~  150 (185)
                      ..+..+|++++|+|+.  +-++-......+...-...     .....|++++.||.|+..+...... ...+-..  ...
T Consensus       344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~--~~~  421 (531)
T KOG1191|consen  344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA--EGR  421 (531)
T ss_pred             HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc--ccC
Confidence            4567899999999993  3333333333333322211     1124789999999998765222211 1111111  111


Q ss_pred             cceEE-EeecccCCCCHHHHHHHHHHHHhh
Q 029920          151 RHWKI-VGCSAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       151 ~~~~~-~~~Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                      ...++ .++|++++++++.|.+.+.+.+..
T Consensus       422 ~~~~i~~~vs~~tkeg~~~L~~all~~~~~  451 (531)
T KOG1191|consen  422 SVFPIVVEVSCTTKEGCERLSTALLNIVER  451 (531)
T ss_pred             cccceEEEeeechhhhHHHHHHHHHHHHHH
Confidence            33444 559999999999999998887643

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=4.7e-17  Score=112.27  Aligned_cols=169  Identities=24%  Similarity=0.354  Sum_probs=128.0

Q ss_pred             HHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhc---C
Q 029920            7 IRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFE---Q   83 (185)
Q Consensus         7 ~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~   83 (185)
                      ......++....|.++|+.+||||+|.-+|..+..+.....+......+.+++....++|.||+.+.+.....++.   .
T Consensus        29 ~~~~~rrs~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~  108 (238)
T KOG0090|consen   29 KLKLFRRSKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYS  108 (238)
T ss_pred             HHHHHhhccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHcccccc
Confidence            3344556667889999999999999999999887777777777777778888888999999999999887777777   7


Q ss_pred             CCEEEEEEeCCC-cccHHHHHHHHHHHHhcc--ccCCCeEEEEeecCCCCCCCCHHHHHHhcCcc---------------
Q 029920           84 TDGLVWVVDSSD-LRRLDDCKMELDNLLKEE--RLSGASLLILANKQDINGALTPTEIAKVLNLE---------------  145 (185)
Q Consensus        84 ~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~--~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~---------------  145 (185)
                      +-+++||+|... ........+++-+++...  ....+|++++-||.|+..+...+.+.+.+..+               
T Consensus       109 akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~  188 (238)
T KOG0090|consen  109 AKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSIS  188 (238)
T ss_pred             ceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence            899999999764 556667777777776654  24568999999999997765554433332110               


Q ss_pred             -------------c--cc----CccceEEEeecccCCCCHHHHHHHHHHH
Q 029920          146 -------------A--MD----KTRHWKIVGCSAYTGEGLLEGFDWLVQD  176 (185)
Q Consensus       146 -------------~--~~----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  176 (185)
                                   .  +.    ....+.|.++|++++ +++++-+|+...
T Consensus       189 ~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  189 DEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             cccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                         0  00    014567899999999 899999998764

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.76  E-value=1.4e-17  Score=136.20  Aligned_cols=152  Identities=13%  Similarity=0.125  Sum_probs=97.8

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCccc------------------------------------ccCcceEEEEE
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTSVI------------------------------------SPTLGFNIKTV   55 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~------------------------------------~~t~~~~~~~~   55 (185)
                      +.+..++|+++|++++|||||+++|+...-...                                    .-|.......+
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            466779999999999999999999875322110                                    01222333445


Q ss_pred             EEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-
Q 029920           56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-  134 (185)
Q Consensus        56 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-  134 (185)
                      ..++.++.++||||++.+.......+..+|++++|+|+.....-+ ....+. ++...  ...++++++||+|+.+... 
T Consensus       100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~-~~~~~--~~~~iivvvNK~D~~~~~~~  175 (632)
T PRK05506        100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSF-IASLL--GIRHVVLAVNKMDLVDYDQE  175 (632)
T ss_pred             ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHH-HHHHh--CCCeEEEEEEecccccchhH
Confidence            567789999999999988766666788999999999997642211 111111 12211  1367899999999864211 


Q ss_pred             -HHHHHHhcCc--ccccCccceEEEeecccCCCCHHH
Q 029920          135 -PTEIAKVLNL--EAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus       135 -~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                       ..++...+..  ... .....+++++||++|.|+++
T Consensus       176 ~~~~i~~~i~~~~~~~-~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        176 VFDEIVADYRAFAAKL-GLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHHHc-CCCCccEEEEecccCCCccc
Confidence             1222222211  011 11456799999999999874

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.76  E-value=6.9e-18  Score=110.59  Aligned_cols=163  Identities=18%  Similarity=0.268  Sum_probs=121.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      -.++|.++|++..|||||+-...++... .+..+.|  +..+.+...+  ..|.+||..|++++..+.......+.++++
T Consensus        19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF   98 (205)
T KOG1673|consen   19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF   98 (205)
T ss_pred             eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence            3689999999999999999998888774 4445555  3444455544  689999999999999988888889999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCc-ccccCccceEEEeecccCCCCHHH
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNL-EAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      ++|++++.++....+|+++....+ ...+ -|+|++|.|..-...++.....-.+ -..++-.+.+.|.+|+.++.|+..
T Consensus        99 mFDLt~r~TLnSi~~WY~QAr~~N-ktAi-PilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~K  176 (205)
T KOG1673|consen   99 MFDLTRRSTLNSIKEWYRQARGLN-KTAI-PILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQK  176 (205)
T ss_pred             EEecCchHHHHHHHHHHHHHhccC-Cccc-eEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHH
Confidence            999999999999999999875542 2224 4678999996543333221111111 112222567889999999999999


Q ss_pred             HHHHHHHHHhh
Q 029920          169 GFDWLVQDIAS  179 (185)
Q Consensus       169 l~~~l~~~~~~  179 (185)
                      +|..+.-.+-.
T Consensus       177 IFK~vlAklFn  187 (205)
T KOG1673|consen  177 IFKIVLAKLFN  187 (205)
T ss_pred             HHHHHHHHHhC
Confidence            99987766543

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.76  E-value=4.8e-17  Score=125.90  Aligned_cols=159  Identities=18%  Similarity=0.165  Sum_probs=114.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCccc-----ccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVI-----SPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      .++++-|-++|+..-|||||+.+|.+......     ...+|-..-.+. .+..+.+.||||+..|..++.....-+|++
T Consensus       150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIv  228 (683)
T KOG1145|consen  150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIV  228 (683)
T ss_pred             CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEE
Confidence            34677899999999999999999988766321     222222222233 568999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccc--cCccceEEEeecccCCCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAM--DKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~  165 (185)
                      ++|+.+.|.-.-+.     .+.+++....+.|+++.+||+|.+.....+...+.+.....  .-..+.+++++||++|.|
T Consensus       229 VLVVAadDGVmpQT-----~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~n  303 (683)
T KOG1145|consen  229 VLVVAADDGVMPQT-----LEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGEN  303 (683)
T ss_pred             EEEEEccCCccHhH-----HHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCC
Confidence            99999988533222     22233334458999999999998876444333333332211  112567899999999999


Q ss_pred             HHHHHHHHHHHH
Q 029920          166 LLEGFDWLVQDI  177 (185)
Q Consensus       166 i~~l~~~l~~~~  177 (185)
                      ++.|.+.++-..
T Consensus       304 l~~L~eaill~A  315 (683)
T KOG1145|consen  304 LDLLEEAILLLA  315 (683)
T ss_pred             hHHHHHHHHHHH
Confidence            999988876543

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.75  E-value=1.1e-16  Score=113.28  Aligned_cols=162  Identities=14%  Similarity=0.077  Sum_probs=100.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCccc-----ccCcceEEEEEEEcCeEEEEEEcCCchhh-------HHHH----Hhh
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVI-----SPTLGFNIKTVTYQKYTLNIWDVGGQRTI-------RSYW----RNY   80 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~----~~~   80 (185)
                      ++|+++|.+|+|||||+|++++......     +.|.........+++..+.++||||....       ....    ...
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~   80 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS   80 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence            4799999999999999999998866322     23444555566778899999999995432       1111    122


Q ss_pred             hcCCCEEEEEEeCCCc-ccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCc--ccccCccceEEEe
Q 029920           81 FEQTDGLVWVVDSSDL-RRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNL--EAMDKTRHWKIVG  157 (185)
Q Consensus        81 ~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  157 (185)
                      .++.|++++|+++.+. .......+++...+..  ..-.++++++|++|.......++.......  ..+-..++-.++.
T Consensus        81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~--~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~  158 (196)
T cd01852          81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGE--KVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA  158 (196)
T ss_pred             CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhCh--HhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence            3678999999999862 2223333344443331  112579999999997654333322111100  0000112222222


Q ss_pred             e-----cccCCCCHHHHHHHHHHHHhhh
Q 029920          158 C-----SAYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       158 ~-----Sa~~~~~i~~l~~~l~~~~~~~  180 (185)
                      +     |+..+.++++|++.+.+.+.++
T Consensus       159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~  186 (196)
T cd01852         159 FNNKAKGEEQEQQVKELLAKVESMVKEN  186 (196)
T ss_pred             EeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence            2     3667889999999999998863

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.74  E-value=3.9e-20  Score=124.50  Aligned_cols=162  Identities=21%  Similarity=0.305  Sum_probs=127.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC---eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK---YTLNIWDVGGQRTIRSYWRNYFEQTDG   86 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~---~~~~~~D~~g~~~~~~~~~~~~~~~d~   86 (185)
                      +.+.+++.|+|..|+|||+++.+.....++ .+..|++  +..+.+.+++   +.+++||..|++.+..+...|++.+++
T Consensus        22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~  101 (229)
T KOG4423|consen   22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG  101 (229)
T ss_pred             hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence            456799999999999999999999888876 4666776  4445566665   568899999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhcccc---CCCeEEEEeecCCCCCCCCH---HHHHHhcCcccccCccc-eEEEeec
Q 029920           87 LVWVVDSSDLRRLDDCKMELDNLLKEERL---SGASLLILANKQDINGALTP---TEIAKVLNLEAMDKTRH-WKIVGCS  159 (185)
Q Consensus        87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~S  159 (185)
                      .++|+|+++..+|+....|.++.......   ...|+++.+||||.......   +.+......      ++ ..-+++|
T Consensus       102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~ke------ngf~gwtets  175 (229)
T KOG4423|consen  102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKE------NGFEGWTETS  175 (229)
T ss_pred             eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhc------cCccceeeec
Confidence            99999999999999999999988665433   34789999999998543222   222222222      22 2369999


Q ss_pred             ccCCCCHHHHHHHHHHHHhhh
Q 029920          160 AYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~~  180 (185)
                      ++.+.|++|.-..++..+.-+
T Consensus       176 ~Kenkni~Ea~r~lVe~~lvn  196 (229)
T KOG4423|consen  176 AKENKNIPEAQRELVEKILVN  196 (229)
T ss_pred             cccccChhHHHHHHHHHHHhh
Confidence            999999999999999876543

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.74  E-value=3.8e-18  Score=132.66  Aligned_cols=162  Identities=18%  Similarity=0.192  Sum_probs=120.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcce--E-EEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGF--N-IKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~--~-~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      ....+||+++|+.||||||||-+|....+....|..-.  . ...+.-+.+...++|++..+.-+.....-++.+|++.+
T Consensus         6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l   85 (625)
T KOG1707|consen    6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL   85 (625)
T ss_pred             CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence            45679999999999999999999999888655443221  1 12233455778999998777666666777899999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccc--cCCCeEEEEeecCCCCCCCCH--HH-HHHhcCcccccCccceEEEeecccCCC
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEER--LSGASLLILANKQDINGALTP--TE-IAKVLNLEAMDKTRHWKIVGCSAYTGE  164 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (185)
                      ||+++++++++.+...|...++...  -.+.|+|+|+||+|..+....  +. ....+..    ....-.+++|||++-.
T Consensus        86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~----f~EiEtciecSA~~~~  161 (625)
T KOG1707|consen   86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIA----FAEIETCIECSALTLA  161 (625)
T ss_pred             EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHH----hHHHHHHHhhhhhhhh
Confidence            9999999999999999999888754  246899999999998665433  22 1211111    0012247999999999


Q ss_pred             CHHHHHHHHHHHHh
Q 029920          165 GLLEGFDWLVQDIA  178 (185)
Q Consensus       165 ~i~~l~~~l~~~~~  178 (185)
                      |+.++|....+.+.
T Consensus       162 n~~e~fYyaqKaVi  175 (625)
T KOG1707|consen  162 NVSELFYYAQKAVI  175 (625)
T ss_pred             hhHhhhhhhhheee
Confidence            99999988766653

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.74  E-value=4e-17  Score=120.13  Aligned_cols=155  Identities=24%  Similarity=0.299  Sum_probs=102.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC-------cccccCcceEEEEEEEcCeEEEEEEcCCchh-------hHHHHHhhhcC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT-------SVISPTLGFNIKTVTYQKYTLNIWDVGGQRT-------IRSYWRNYFEQ   83 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~   83 (185)
                      -|.++|.||+|||||++.+..-+.       ....|..++...   .....|.+-|.||.-+       .......+++.
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER  237 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIER  237 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence            478999999999999999976544       233344443222   3556799999999432       33345567889


Q ss_pred             CCEEEEEEeCCCccc---HHHHHHHHHHHHhc-cccCCCeEEEEeecCCCCCC-CCHHHHHHhcCcccccCccceEEE-e
Q 029920           84 TDGLVWVVDSSDLRR---LDDCKMELDNLLKE-ERLSGASLLILANKQDINGA-LTPTEIAKVLNLEAMDKTRHWKIV-G  157 (185)
Q Consensus        84 ~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~-~~~~~~~~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~  157 (185)
                      |.+++.|+|++..+.   .+.......++..+ ....++|.++|+||+|+... +..+.....+...     ..+..+ .
T Consensus       238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~-----~~~~~~~~  312 (369)
T COG0536         238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEA-----LGWEVFYL  312 (369)
T ss_pred             hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHh-----cCCCccee
Confidence            999999999985432   23322222222222 24458999999999996544 3333333333321     223222 2


Q ss_pred             ecccCCCCHHHHHHHHHHHHhhh
Q 029920          158 CSAYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       158 ~Sa~~~~~i~~l~~~l~~~~~~~  180 (185)
                      +||.++.|++++...+.+.+.+.
T Consensus       313 ISa~t~~g~~~L~~~~~~~l~~~  335 (369)
T COG0536         313 ISALTREGLDELLRALAELLEET  335 (369)
T ss_pred             eehhcccCHHHHHHHHHHHHHHh
Confidence            99999999999999999887654

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.74  E-value=5.7e-17  Score=126.95  Aligned_cols=163  Identities=16%  Similarity=0.157  Sum_probs=105.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCccc------ccC--cceEEE---------------EEEE------------
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVI------SPT--LGFNIK---------------TVTY------------   57 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~------~~t--~~~~~~---------------~~~~------------   57 (185)
                      ....++|+++|+-..|||||+.+|.+......      .-|  .++...               ....            
T Consensus        31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (460)
T PTZ00327         31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG  110 (460)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence            46678999999999999999999987544211      111  111110               0000            


Q ss_pred             ----cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC
Q 029920           58 ----QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL  133 (185)
Q Consensus        58 ----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~  133 (185)
                          -...+.++|+||++.+.......+..+|++++|+|+.+........+.+. ++....  -.++|+++||+|+.+..
T Consensus       111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lg--i~~iIVvlNKiDlv~~~  187 (460)
T PTZ00327        111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIMK--LKHIIILQNKIDLVKEA  187 (460)
T ss_pred             ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHcC--CCcEEEEEecccccCHH
Confidence                02368999999999998887788889999999999987421122223332 222221  24689999999997543


Q ss_pred             CHHHHHHhcCccc-ccCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          134 TPTEIAKVLNLEA-MDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       134 ~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      ...+....+.... .......+++++||++|.|+++|++.|.+.+.
T Consensus       188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence            3222222221100 00114678999999999999999999987654

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.73  E-value=4.4e-17  Score=116.71  Aligned_cols=108  Identities=20%  Similarity=0.216  Sum_probs=76.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCc---------c----------cccCcceEEEEEEEc----------CeEEEEEEcC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTS---------V----------ISPTLGFNIKTVTYQ----------KYTLNIWDVG   68 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~---------~----------~~~t~~~~~~~~~~~----------~~~~~~~D~~   68 (185)
                      +|+++|+.++|||||+.+|....-.         .          ..-|+......+.+.          +..+++||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            7999999999999999998643210         0          001111111122222          6789999999


Q ss_pred             CchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC
Q 029920           69 GQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN  130 (185)
Q Consensus        69 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  130 (185)
                      |+..+......+++.+|++++|+|+.+..+.+. ...+.....    .++|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence            999999999999999999999999998655443 223333322    368999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK12739 elongation factor G; Reviewed

Probab=99.73  E-value=2.9e-16  Score=129.49  Aligned_cols=115  Identities=22%  Similarity=0.155  Sum_probs=84.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCC--Cc-------------------ccccCcceEEEEEEEcCeEEEEEEcCCch
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGED--TS-------------------VISPTLGFNIKTVTYQKYTLNIWDVGGQR   71 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~--~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~   71 (185)
                      .++..+|+++|++++|||||+++|....  ..                   ...-|.......+.+++.++.++||||+.
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~   84 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV   84 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence            4567789999999999999999986321  00                   11123444455677889999999999999


Q ss_pred             hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           72 TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        72 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      .+...+...+..+|++++|+|+.+....+. ...+...    ...++|.|+++||+|+...
T Consensus        85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~----~~~~~p~iv~iNK~D~~~~  140 (691)
T PRK12739         85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQA----DKYGVPRIVFVNKMDRIGA  140 (691)
T ss_pred             HHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHH----HHcCCCEEEEEECCCCCCC
Confidence            888888889999999999999987533222 2222222    2236899999999998754

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=8.9e-17  Score=124.38  Aligned_cols=157  Identities=18%  Similarity=0.229  Sum_probs=111.0

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCC------c--------ccccCcceE----EEEEEEcC---eEEEEEEcCCchh
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDT------S--------VISPTLGFN----IKTVTYQK---YTLNIWDVGGQRT   72 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~------~--------~~~~t~~~~----~~~~~~~~---~~~~~~D~~g~~~   72 (185)
                      ++-.+++|+.+-.-|||||..+|....-      .        ......|++    ...+.+.+   +.++++||||+-.
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            5556899999999999999999743111      0        111222222    23345554   8999999999999


Q ss_pred             hHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccc
Q 029920           73 IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRH  152 (185)
Q Consensus        73 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  152 (185)
                      |.......+..||++++|+|++..-.-+.....+..+ +    .+..+|.|+||+|++.+...+...+.+.  .+.. +.
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf-e----~~L~iIpVlNKIDlp~adpe~V~~q~~~--lF~~-~~  209 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF-E----AGLAIIPVLNKIDLPSADPERVENQLFE--LFDI-PP  209 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH-H----cCCeEEEeeeccCCCCCCHHHHHHHHHH--HhcC-Cc
Confidence            9999999999999999999999743333333322332 2    2688999999999987744333222221  1111 45


Q ss_pred             eEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          153 WKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       153 ~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      .+++.+||++|.|+++++++|++.+.
T Consensus       210 ~~~i~vSAK~G~~v~~lL~AII~rVP  235 (650)
T KOG0462|consen  210 AEVIYVSAKTGLNVEELLEAIIRRVP  235 (650)
T ss_pred             cceEEEEeccCccHHHHHHHHHhhCC
Confidence            57999999999999999999999875

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.72  E-value=2.2e-16  Score=130.16  Aligned_cols=116  Identities=20%  Similarity=0.105  Sum_probs=84.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-----c----------------cccCcceEEEEEEEcCeEEEEEEcCCch
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-----V----------------ISPTLGFNIKTVTYQKYTLNIWDVGGQR   71 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-----~----------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~   71 (185)
                      .++..+|+++|++|+|||||+++|....-.     .                ..-|.......+.+++.++.++||||+.
T Consensus         7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~   86 (689)
T TIGR00484         7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV   86 (689)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence            445679999999999999999999632110     0                1113334445677889999999999999


Q ss_pred             hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC
Q 029920           72 TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL  133 (185)
Q Consensus        72 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~  133 (185)
                      .+......+++.+|++++|+|+.+....+. ...+...    ...++|+++++||+|+....
T Consensus        87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~----~~~~~p~ivviNK~D~~~~~  143 (689)
T TIGR00484        87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQA----NRYEVPRIAFVNKMDKTGAN  143 (689)
T ss_pred             chhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHH----HHcCCCEEEEEECCCCCCCC
Confidence            888888889999999999999987544332 2222322    22368999999999987653

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.71  E-value=5.6e-16  Score=116.36  Aligned_cols=155  Identities=25%  Similarity=0.256  Sum_probs=96.1

Q ss_pred             EEEEcCCCCChHHHHHHHhCCCCc-------ccccCcceEEEEE-------------------E-EcCeEEEEEEcCCc-
Q 029920           19 ILMVGLDNSGKTTIVLKINGEDTS-------VISPTLGFNIKTV-------------------T-YQKYTLNIWDVGGQ-   70 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~~~~~-------~~~~t~~~~~~~~-------------------~-~~~~~~~~~D~~g~-   70 (185)
                      |+++|.||+|||||+|+|++....       ...|+.+......                   . ....++++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            579999999999999999987642       2233433322110                   0 12368999999996 


Q ss_pred             ---hhhHH---HHHhhhcCCCEEEEEEeCCC---------------cc-cHHHHHH------------------------
Q 029920           71 ---RTIRS---YWRNYFEQTDGLVWVVDSSD---------------LR-RLDDCKM------------------------  104 (185)
Q Consensus        71 ---~~~~~---~~~~~~~~~d~~i~v~d~~~---------------~~-s~~~~~~------------------------  104 (185)
                         ++...   .....++.+|++++|+|+..               |. .++.+..                        
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~  160 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE  160 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               33333   33445899999999999973               10 1111100                        


Q ss_pred             --------------------HHHHHHhcc---------------------ccCCCeEEEEeecCCCCCCCCHHHHHHhcC
Q 029920          105 --------------------ELDNLLKEE---------------------RLSGASLLILANKQDINGALTPTEIAKVLN  143 (185)
Q Consensus       105 --------------------~~~~~~~~~---------------------~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~  143 (185)
                                          .+..++...                     ....+|+|+++||+|+.....   ....+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~---~~~~l~  237 (318)
T cd01899         161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAEN---NISKLR  237 (318)
T ss_pred             CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHH---HHHHHH
Confidence                                011111110                     123579999999999754322   222111


Q ss_pred             cccccCccceEEEeecccCCCCHHHHHH-HHHHHHhhh
Q 029920          144 LEAMDKTRHWKIVGCSAYTGEGLLEGFD-WLVQDIASR  180 (185)
Q Consensus       144 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~-~l~~~~~~~  180 (185)
                      .    .....+++++||+.+.+++++.+ .+.+.+.+.
T Consensus       238 ~----~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~  271 (318)
T cd01899         238 L----KYPDEIVVPTSAEAELALRRAAKQGLIKYDPGD  271 (318)
T ss_pred             h----hCCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence            1    11345799999999999999998 688887653

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>TIGR00503 prfC peptide chain release factor 3

Probab=99.71  E-value=8.9e-17  Score=128.12  Aligned_cols=116  Identities=16%  Similarity=0.218  Sum_probs=82.1

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhC--CCCcc-------------c----------ccCcceEEEEEEEcCeEEEEEE
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKING--EDTSV-------------I----------SPTLGFNIKTVTYQKYTLNIWD   66 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~--~~~~~-------------~----------~~t~~~~~~~~~~~~~~~~~~D   66 (185)
                      +..+..+|+++|++++|||||+++|+.  +....             .          ..+.......+.+++..++++|
T Consensus         7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD   86 (527)
T TIGR00503         7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD   86 (527)
T ss_pred             hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence            346678999999999999999999742  21110             0          0111223345677889999999


Q ss_pred             cCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           67 VGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        67 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      |||+..+......++..+|++++|+|+++... .....++ ....   ..++|+++++||+|+...
T Consensus        87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~-~~~~---~~~~PiivviNKiD~~~~  147 (527)
T TIGR00503        87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLM-EVTR---LRDTPIFTFMNKLDRDIR  147 (527)
T ss_pred             CCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHH-HHHH---hcCCCEEEEEECccccCC
Confidence            99999888877778899999999999987421 1222222 2222   247899999999998654

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK00007 elongation factor G; Reviewed

Probab=99.71  E-value=8.7e-16  Score=126.66  Aligned_cols=115  Identities=21%  Similarity=0.121  Sum_probs=82.6

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhC--CCCc-------------------ccccCcceEEEEEEEcCeEEEEEEcCCch
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKING--EDTS-------------------VISPTLGFNIKTVTYQKYTLNIWDVGGQR   71 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~--~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~   71 (185)
                      .++..+|+++|++|+|||||+++|..  +...                   ...-|.......+.+.+..++++||||+.
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~   86 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV   86 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence            45567999999999999999999963  1110                   11123333344567789999999999998


Q ss_pred             hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           72 TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        72 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      .+.......+..+|++++|+|+...-..+. ...+.....    .++|.++++||+|+...
T Consensus        87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~----~~~p~iv~vNK~D~~~~  142 (693)
T PRK00007         87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK----YKVPRIAFVNKMDRTGA  142 (693)
T ss_pred             HHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence            887778888899999999999886433222 222333322    36899999999998754

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=1.4e-16  Score=119.95  Aligned_cols=154  Identities=19%  Similarity=0.234  Sum_probs=102.0

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhC---------------------CC---C----------cccccCcceEEEEEEE
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKING---------------------ED---T----------SVISPTLGFNIKTVTY   57 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~---------------------~~---~----------~~~~~t~~~~~~~~~~   57 (185)
                      ..+..++++++|+..+|||||+-+|.-                     +.   +          ...+-|+......++.
T Consensus         3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet   82 (428)
T COG5256           3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET   82 (428)
T ss_pred             CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence            356789999999999999999988732                     11   0          0112244445555667


Q ss_pred             cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc---cHH--HHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           58 QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR---RLD--DCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        58 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~--~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      +.+.+.++|+||+..|.........++|+.|+|+|+.+.+   .|.  .....-.-+.+..  .-..+||++||+|..+.
T Consensus        83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl--Gi~~lIVavNKMD~v~w  160 (428)
T COG5256          83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL--GIKQLIVAVNKMDLVSW  160 (428)
T ss_pred             CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc--CCceEEEEEEccccccc
Confidence            7889999999999999988888889999999999999863   111  1111111111221  24568999999999864


Q ss_pred             CCH--HHHHHhcCc----ccccCccceEEEeecccCCCCHHH
Q 029920          133 LTP--TEIAKVLNL----EAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus       133 ~~~--~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      .+.  +++...+..    ..+.. .+++|+++|+..|.|+.+
T Consensus       161 de~rf~ei~~~v~~l~k~~G~~~-~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         161 DEERFEEIVSEVSKLLKMVGYNP-KDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCc-cCCeEEecccccCCcccc
Confidence            322  222222221    11211 368899999999999854

>cd00066 G-alpha G protein alpha subunit

Probab=99.70  E-value=5.9e-16  Score=116.76  Aligned_cols=135  Identities=22%  Similarity=0.316  Sum_probs=102.2

Q ss_pred             cCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCc----------ccHHHHHHHHHHHHhcccc
Q 029920           46 PTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL----------RRLDDCKMELDNLLKEERL  115 (185)
Q Consensus        46 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~  115 (185)
                      +|.|+....+.+++..+.+||++|+...+..|..++.+++++++|+|+++.          ..+.+....+..++.....
T Consensus       147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~  226 (317)
T cd00066         147 KTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF  226 (317)
T ss_pred             ccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence            466677777788899999999999999999999999999999999999873          4677788888888887666


Q ss_pred             CCCeEEEEeecCCCCCC------------------CCHHHHHHhcCccc----ccCccceEEEeecccCCCCHHHHHHHH
Q 029920          116 SGASLLILANKQDINGA------------------LTPTEIAKVLNLEA----MDKTRHWKIVGCSAYTGEGLLEGFDWL  173 (185)
Q Consensus       116 ~~~~~ivv~nK~D~~~~------------------~~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (185)
                      .+.|+++++||.|+...                  ...++....+....    -...+.+.+..++|.+-.++..+|+.+
T Consensus       227 ~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v  306 (317)
T cd00066         227 ANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAV  306 (317)
T ss_pred             cCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHH
Confidence            78999999999995431                  11112111111111    011245667789999999999999999


Q ss_pred             HHHHhhh
Q 029920          174 VQDIASR  180 (185)
Q Consensus       174 ~~~~~~~  180 (185)
                      .+.+.++
T Consensus       307 ~~~i~~~  313 (317)
T cd00066         307 KDIILQN  313 (317)
T ss_pred             HHHHHHH
Confidence            9988764

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>smart00275 G_alpha G protein alpha subunit

Probab=99.69  E-value=9.6e-16  Score=116.50  Aligned_cols=135  Identities=19%  Similarity=0.282  Sum_probs=101.8

Q ss_pred             cCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCc----------ccHHHHHHHHHHHHhcccc
Q 029920           46 PTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL----------RRLDDCKMELDNLLKEERL  115 (185)
Q Consensus        46 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~  115 (185)
                      +|.|+....+.+++..+.+||.+|+...+..|..++.++++++||+|+++.          ..+......+..++.....
T Consensus       170 ~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~  249 (342)
T smart00275      170 PTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF  249 (342)
T ss_pred             CccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence            466667777888889999999999999999999999999999999999973          3677788888888887667


Q ss_pred             CCCeEEEEeecCCCCCCC-----------------CHHHH----HHhcCccccc-CccceEEEeecccCCCCHHHHHHHH
Q 029920          116 SGASLLILANKQDINGAL-----------------TPTEI----AKVLNLEAMD-KTRHWKIVGCSAYTGEGLLEGFDWL  173 (185)
Q Consensus       116 ~~~~~ivv~nK~D~~~~~-----------------~~~~~----~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (185)
                      .+.|+++++||.|+....                 .....    ...+....-. ....+.++.++|.+-.++..+|+.+
T Consensus       250 ~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v  329 (342)
T smart00275      250 ANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAV  329 (342)
T ss_pred             cCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHH
Confidence            789999999999964320                 11111    1111111000 1134667889999999999999999


Q ss_pred             HHHHhhh
Q 029920          174 VQDIASR  180 (185)
Q Consensus       174 ~~~~~~~  180 (185)
                      .+.+.++
T Consensus       330 ~~~I~~~  336 (342)
T smart00275      330 KDIILQR  336 (342)
T ss_pred             HHHHHHH
Confidence            8887654

Subunit of G proteins that contains the guanine nucleotide binding site

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.68  E-value=3.3e-15  Score=115.34  Aligned_cols=79  Identities=25%  Similarity=0.307  Sum_probs=53.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCcc---cccCcceEEEEEE------------------------EcCeEEEEEEcC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTSV---ISPTLGFNIKTVT------------------------YQKYTLNIWDVG   68 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~~---~~~t~~~~~~~~~------------------------~~~~~~~~~D~~   68 (185)
                      .++|+++|.||+|||||+|+|++.....   ...|.........                        ....+++++|+|
T Consensus         1 ~~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a   80 (396)
T PRK09602          1 MITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA   80 (396)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence            3689999999999999999999876632   1122222221111                        123678999999


Q ss_pred             Cch----h---hHHHHHhhhcCCCEEEEEEeCC
Q 029920           69 GQR----T---IRSYWRNYFEQTDGLVWVVDSS   94 (185)
Q Consensus        69 g~~----~---~~~~~~~~~~~~d~~i~v~d~~   94 (185)
                      |..    .   ........++.+|++++|+|+.
T Consensus        81 Gl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         81 GLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             CcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            942    2   2223344588999999999997

>PRK12740 elongation factor G; Reviewed

Probab=99.66  E-value=2.8e-15  Score=123.58  Aligned_cols=106  Identities=22%  Similarity=0.173  Sum_probs=77.9

Q ss_pred             EcCCCCChHHHHHHHhCCCCc---------------------ccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhh
Q 029920           22 VGLDNSGKTTIVLKINGEDTS---------------------VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNY   80 (185)
Q Consensus        22 ~G~~~~GKttli~~l~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~   80 (185)
                      +|++|+|||||+++|....-.                     ....|.......+.+.+..+.++||||+..+...+..+
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            599999999999999432110                     11224444555677889999999999999888888888


Q ss_pred             hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      +..+|++++|+|+++...... ...+....    ..++|+++++||+|+...
T Consensus        81 l~~aD~vllvvd~~~~~~~~~-~~~~~~~~----~~~~p~iiv~NK~D~~~~  127 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQT-ETVWRQAE----KYGVPRIIFVNKMDRAGA  127 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHH-HHHHHHHH----HcCCCEEEEEECCCCCCC
Confidence            999999999999988654433 22233322    236899999999998754

>PRK09866 hypothetical protein; Provisional

Probab=99.66  E-value=5.7e-15  Score=117.58  Aligned_cols=113  Identities=16%  Similarity=0.187  Sum_probs=71.5

Q ss_pred             eEEEEEEcCCchh-----hHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC
Q 029920           60 YTLNIWDVGGQRT-----IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT  134 (185)
Q Consensus        60 ~~~~~~D~~g~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~  134 (185)
                      .++.++||||...     ........+..+|+++||+|+.+..+...  ..+...+.... .+.|+++|+||+|+.+...
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dree  306 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNS  306 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence            4678999999643     22334457899999999999987433332  22233333211 1259999999999864322


Q ss_pred             --HHHHHHhcCccccc-CccceEEEeecccCCCCHHHHHHHHHH
Q 029920          135 --PTEIAKVLNLEAMD-KTRHWKIVGCSAYTGEGLLEGFDWLVQ  175 (185)
Q Consensus       135 --~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (185)
                        .+.+.......... ......++++||+.|.|++++.+.|..
T Consensus       307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence              22333322111001 112346899999999999999999877

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.65  E-value=1.1e-15  Score=109.78  Aligned_cols=163  Identities=17%  Similarity=0.269  Sum_probs=109.2

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcccc---cCcc-eEEEEEEEcCeEEEEEEcCCchh-------hHHHHHhhh
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVIS---PTLG-FNIKTVTYQKYTLNIWDVGGQRT-------IRSYWRNYF   81 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~---~t~~-~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~   81 (185)
                      ...+++|.++|..|+|||||||+|+........   .+.. .+.....++...+.+||+||.++       .++....++
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l  115 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL  115 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence            557899999999999999999999965554332   2222 23333455668899999999544       667788889


Q ss_pred             cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC---------CHHHHHHhcCc---ccccC
Q 029920           82 EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL---------TPTEIAKVLNL---EAMDK  149 (185)
Q Consensus        82 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~---------~~~~~~~~~~~---~~~~~  149 (185)
                      ...|.+++++++.|+. +.--...+++++...  .+.++++++|.+|...+.         ....+.+....   ...+.
T Consensus       116 ~~~DLvL~l~~~~dra-L~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~  192 (296)
T COG3596         116 PKLDLVLWLIKADDRA-LGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL  192 (296)
T ss_pred             hhccEEEEeccCCCcc-ccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999853 222223344544432  258999999999976541         11111111111   00011


Q ss_pred             -ccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          150 -TRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       150 -~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                       ..--|++..|.+.++|++++...+++.+.
T Consensus       193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp  222 (296)
T COG3596         193 FQEVKPVVAVSGRLPWGLKELVRALITALP  222 (296)
T ss_pred             HhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence             12346777888999999999999998875

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.65  E-value=8.1e-16  Score=97.41  Aligned_cols=138  Identities=21%  Similarity=0.213  Sum_probs=93.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCch----hhHHHHHhhhcCCCEEEEEEeC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQR----TIRSYWRNYFEQTDGLVWVVDS   93 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~d~~i~v~d~   93 (185)
                      |++++|..|||||||.++|.|...-.. .|-.     +++++  =-.+||||.-    ............+|++++|-.+
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~lyk-KTQA-----ve~~d--~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~a   74 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTLYK-KTQA-----VEFND--KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAA   74 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhhhc-ccce-----eeccC--ccccCCchhhhhhhHHHHHHHHHhhccceeeeeecc
Confidence            789999999999999999998754211 1111     11211  1258999943    2322233345789999999999


Q ss_pred             CCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHH
Q 029920           94 SDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL  173 (185)
Q Consensus        94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (185)
                      +++++.-.     -.+...   ...|+|-+++|.|+.++...+.....+.+..     .-++|++|+.++.|++++++.|
T Consensus        75 nd~~s~f~-----p~f~~~---~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG-----a~~IF~~s~~d~~gv~~l~~~L  141 (148)
T COG4917          75 NDPESRFP-----PGFLDI---GVKKVIGVVTKADLAEDADISLVKRWLREAG-----AEPIFETSAVDNQGVEELVDYL  141 (148)
T ss_pred             cCccccCC-----cccccc---cccceEEEEecccccchHhHHHHHHHHHHcC-----CcceEEEeccCcccHHHHHHHH
Confidence            99754322     111111   2467999999999997655555555554432     2369999999999999999988


Q ss_pred             HHH
Q 029920          174 VQD  176 (185)
Q Consensus       174 ~~~  176 (185)
                      ...
T Consensus       142 ~~~  144 (148)
T COG4917         142 ASL  144 (148)
T ss_pred             Hhh
Confidence            764

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.62  E-value=4.2e-15  Score=113.66  Aligned_cols=155  Identities=21%  Similarity=0.266  Sum_probs=107.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc--------------ccccCcceEEE----EEEE-----cCeEEEEEEcCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS--------------VISPTLGFNIK----TVTY-----QKYTLNIWDVGG   69 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~--------------~~~~t~~~~~~----~~~~-----~~~~~~~~D~~g   69 (185)
                      .++..+.+++.+-.-|||||..++....-.              ......|++.+    .+.+     +.+.++++||||
T Consensus         6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG   85 (603)
T COG0481           6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG   85 (603)
T ss_pred             hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence            345567899999999999999998542220              11122222222    2222     348899999999


Q ss_pred             chhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHH---HHHHhcCccc
Q 029920           70 QRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPT---EIAKVLNLEA  146 (185)
Q Consensus        70 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~---~~~~~~~~~~  146 (185)
                      +-.|.-.....+..|.+.++|+|++..-.-+.+...+..+ .    .+.-+|-|+||+|++.+...+   ++.+.++.  
T Consensus        86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAl-e----~~LeIiPViNKIDLP~Adpervk~eIe~~iGi--  158 (603)
T COG0481          86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGI--  158 (603)
T ss_pred             ccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHH-H----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCC--
Confidence            9888877777788999999999999753333333333333 2    268899999999998875443   23333332  


Q ss_pred             ccCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          147 MDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       147 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                          .....+.+||++|.|++++++.|++.+.
T Consensus       159 ----d~~dav~~SAKtG~gI~~iLe~Iv~~iP  186 (603)
T COG0481         159 ----DASDAVLVSAKTGIGIEDVLEAIVEKIP  186 (603)
T ss_pred             ----CcchheeEecccCCCHHHHHHHHHhhCC
Confidence                2334799999999999999999999875

>cd01850 CDC_Septin CDC/Septin

Probab=99.62  E-value=5.6e-15  Score=109.35  Aligned_cols=112  Identities=13%  Similarity=0.152  Sum_probs=69.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCccc-----------ccCcceEE--EEEEEcC--eEEEEEEcCCchhhHH----
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSVI-----------SPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRS----   75 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~-----------~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~----   75 (185)
                      -.++|+|+|.+|+|||||+|+|++..+...           .+|.....  ..+..++  ..+.+|||||......    
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            468999999999999999999998877432           22333222  2334444  5799999999322110    


Q ss_pred             ----------------------HHHhhhc--CCCEEEEEEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEeecCCCC
Q 029920           76 ----------------------YWRNYFE--QTDGLVWVVDSSDLRRLDDC-KMELDNLLKEERLSGASLLILANKQDIN  130 (185)
Q Consensus        76 ----------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~  130 (185)
                                            .+...+.  .+|+++|+++.+.. .+... ...+..+ ..    ++|+++|+||+|+.
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l-~~----~v~vi~VinK~D~l  156 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRL-SK----RVNIIPVIAKADTL  156 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHH-hc----cCCEEEEEECCCcC
Confidence                                  0001122  46888898887642 22222 2222222 21    58999999999986


Q ss_pred             CC
Q 029920          131 GA  132 (185)
Q Consensus       131 ~~  132 (185)
                      ..
T Consensus       157 ~~  158 (276)
T cd01850         157 TP  158 (276)
T ss_pred             CH
Confidence            54

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.60  E-value=2.1e-14  Score=102.67  Aligned_cols=162  Identities=14%  Similarity=0.087  Sum_probs=96.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCccc-----ccCcceEEEEEEEcCeEEEEEEcCCchh-------hHHHHHh----h
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVI-----SPTLGFNIKTVTYQKYTLNIWDVGGQRT-------IRSYWRN----Y   80 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~----~   80 (185)
                      ++|+++|.+|+||||++|.+++......     +.|..........++..+.++||||...       .......    .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~   80 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC   80 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence            5899999999999999999998877432     2355566777788999999999999321       1111221    2


Q ss_pred             hcCCCEEEEEEeCCCc-ccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcC---cccccCccceEEE
Q 029920           81 FEQTDGLVWVVDSSDL-RRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLN---LEAMDKTRHWKIV  156 (185)
Q Consensus        81 ~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  156 (185)
                      ..+.|++++|+++... ..-......+..++....  -..++||+|..|.......++......   ...+-..++-.++
T Consensus        81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~--~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~  158 (212)
T PF04548_consen   81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI--WKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH  158 (212)
T ss_dssp             TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG--GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred             cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH--HhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence            3578999999999842 122334445555554322  246889999998655544332222000   0111111333455


Q ss_pred             eeccc------CCCCHHHHHHHHHHHHhhh
Q 029920          157 GCSAY------TGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       157 ~~Sa~------~~~~i~~l~~~l~~~~~~~  180 (185)
                      .++.+      ...++.+|++.+-+.+.++
T Consensus       159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n  188 (212)
T PF04548_consen  159 VFNNKTKDKEKDESQVSELLEKIEEMVQEN  188 (212)
T ss_dssp             ECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence            55554      3457888888888877665

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.60  E-value=1.3e-14  Score=110.77  Aligned_cols=159  Identities=22%  Similarity=0.299  Sum_probs=114.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCC--cc-------------cccCcc----eEEEEEEEcCeEEEEEEcCCchhhHH
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDT--SV-------------ISPTLG----FNIKTVTYQKYTLNIWDVGGQRTIRS   75 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~--~~-------------~~~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~~   75 (185)
                      ...+|+++.+..-|||||+..|..+.-  ..             .....+    ..-..+.++++.++++||||+..|..
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG   83 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG   83 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence            345799999999999999999865322  11             111222    22234678899999999999999999


Q ss_pred             HHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcC----cccccCcc
Q 029920           76 YWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLN----LEAMDKTR  151 (185)
Q Consensus        76 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~  151 (185)
                      ..+..+.-.|.+++++|+.+.- +...+-.+.+.+..    +.+.|||+||+|.+.+.....+.+.+.    ...-....
T Consensus        84 EVERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~~----gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQL  158 (603)
T COG1217          84 EVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALAL----GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQL  158 (603)
T ss_pred             hhhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHHc----CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhC
Confidence            9999999999999999999742 23333334444444    688899999999987755444333332    22223347


Q ss_pred             ceEEEeecccCCC----------CHHHHHHHHHHHHh
Q 029920          152 HWKIVGCSAYTGE----------GLLEGFDWLVQDIA  178 (185)
Q Consensus       152 ~~~~~~~Sa~~~~----------~i~~l~~~l~~~~~  178 (185)
                      ++|++..|+++|.          ++..||+.|++.+.
T Consensus       159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp  195 (603)
T COG1217         159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVP  195 (603)
T ss_pred             CCcEEEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence            8899999999873          78889999888764

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.60  E-value=4e-14  Score=106.11  Aligned_cols=136  Identities=22%  Similarity=0.340  Sum_probs=102.0

Q ss_pred             ccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc----------cHHHHHHHHHHHHhccc
Q 029920           45 SPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR----------RLDDCKMELDNLLKEER  114 (185)
Q Consensus        45 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~  114 (185)
                      .+|.|+....+.+.+..+.+.|.+||...+.-|.++++++++++||+++++.+          .+.+....+..+.....
T Consensus       180 ~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~  259 (354)
T KOG0082|consen  180 VPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW  259 (354)
T ss_pred             cCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence            35888888888999999999999999999999999999999999999988632          44556777888888877


Q ss_pred             cCCCeEEEEeecCCCCCCC-----------------CHHHHH----HhcCcccccCccceEEEeecccCCCCHHHHHHHH
Q 029920          115 LSGASLLILANKQDINGAL-----------------TPTEIA----KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL  173 (185)
Q Consensus       115 ~~~~~~ivv~nK~D~~~~~-----------------~~~~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (185)
                      ..+.++|+++||.|+....                 ..++..    ..+....-.....+.+..++|.+-.||+.+|..+
T Consensus       260 F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av  339 (354)
T KOG0082|consen  260 FANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAV  339 (354)
T ss_pred             cccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHH
Confidence            7889999999999985421                 111111    1111111111134456667999999999999999


Q ss_pred             HHHHhhh
Q 029920          174 VQDIASR  180 (185)
Q Consensus       174 ~~~~~~~  180 (185)
                      .+.+.+.
T Consensus       340 ~d~Ii~~  346 (354)
T KOG0082|consen  340 TDTIIQN  346 (354)
T ss_pred             HHHHHHH
Confidence            9887654

>cd01882 BMS1 Bms1

Probab=99.59  E-value=3.2e-14  Score=102.51  Aligned_cols=144  Identities=19%  Similarity=0.145  Sum_probs=86.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      ...+..|+++|++|+|||||++.+.+.... ......+. .......+..+.++||||..   .......+.+|++++++
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVllvi  111 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI---NAMIDIAKVADLVLLLI  111 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH---HHHHHHHHhcCEEEEEE
Confidence            345678999999999999999998875222 12222221 11233467789999999864   22233467899999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccccCCCe-EEEEeecCCCCCCCC-HHHHHHhcCcccc-cCccceEEEeecccCCCC
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERLSGAS-LLILANKQDINGALT-PTEIAKVLNLEAM-DKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~  165 (185)
                      |++.......  ..+...+..   .+.| +++|+||+|+..... ..+....+..... ....+.+++.+||+++-.
T Consensus       112 Da~~~~~~~~--~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~  183 (225)
T cd01882         112 DASFGFEMET--FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR  183 (225)
T ss_pred             ecCcCCCHHH--HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence            9986433222  222233322   2566 455999999864322 2222222221111 112456899999998743

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PRK13768 GTPase; Provisional

Probab=99.59  E-value=4.3e-15  Score=108.78  Aligned_cols=118  Identities=20%  Similarity=0.186  Sum_probs=73.7

Q ss_pred             eEEEEEEcCCchhhH---HHHHhh---hcC--CCEEEEEEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEeecCCCC
Q 029920           60 YTLNIWDVGGQRTIR---SYWRNY---FEQ--TDGLVWVVDSSDLRRLDDC-KMELDNLLKEERLSGASLLILANKQDIN  130 (185)
Q Consensus        60 ~~~~~~D~~g~~~~~---~~~~~~---~~~--~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~  130 (185)
                      ..+.++|+||+.+..   ..+..+   +..  .+++++++|+....+.... ..++...... ...+.|+++|+||+|+.
T Consensus        97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~-~~~~~~~i~v~nK~D~~  175 (253)
T PRK13768         97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQ-LRLGLPQIPVLNKADLL  175 (253)
T ss_pred             CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHH-HHcCCCEEEEEEhHhhc
Confidence            378999999976532   222222   222  8999999999764333222 1222221111 12379999999999997


Q ss_pred             CCCCHHHHHHhcCc-----------------------ccccC-ccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          131 GALTPTEIAKVLNL-----------------------EAMDK-TRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       131 ~~~~~~~~~~~~~~-----------------------~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      +..+.++....+..                       +.+.. ....+++++|++++.|+++++++|.+.+.
T Consensus       176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            76555444333321                       00011 12357899999999999999999988764

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.58  E-value=1.4e-14  Score=109.06  Aligned_cols=154  Identities=18%  Similarity=0.183  Sum_probs=92.5

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhC----C--CCc-----ccc------------------cCcceEEEE---------
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKING----E--DTS-----VIS------------------PTLGFNIKT---------   54 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~----~--~~~-----~~~------------------~t~~~~~~~---------   54 (185)
                      ..+.+.|.|.|+||+|||||++.+..    .  ...     ..+                  .........         
T Consensus        53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~  132 (332)
T PRK09435         53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG  132 (332)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence            46778999999999999999998632    1  110     000                  001111111         


Q ss_pred             -----------EEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEE
Q 029920           55 -----------VTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLIL  123 (185)
Q Consensus        55 -----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv  123 (185)
                                 +...++.+.++||+|...-...   ....+|.++++.+....+..+....   ..+      ...-++|
T Consensus       133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~------E~aDIiV  200 (332)
T PRK09435        133 VARKTRETMLLCEAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIM------ELADLIV  200 (332)
T ss_pred             hHHHHHHHHHHHhccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhh------hhhheEE
Confidence                       1123578999999997632222   4567999999976443333333221   121      2234899


Q ss_pred             eecCCCCCCCCHHHH----HHhcCcccccC-ccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          124 ANKQDINGALTPTEI----AKVLNLEAMDK-TRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       124 ~nK~D~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      +||+|+.........    ...+....... .-..|++.+||+++.|++++++.|.+.+.
T Consensus       201 VNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        201 INKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             eehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            999998765433322    22222111000 01247999999999999999999998764

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.57  E-value=9.8e-14  Score=117.16  Aligned_cols=142  Identities=23%  Similarity=0.196  Sum_probs=90.9

Q ss_pred             ChHHHHHHHhCCCCcccc-----cCcceEEEEEEE----------------cCeEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920           28 GKTTIVLKINGEDTSVIS-----PTLGFNIKTVTY----------------QKYTLNIWDVGGQRTIRSYWRNYFEQTDG   86 (185)
Q Consensus        28 GKttli~~l~~~~~~~~~-----~t~~~~~~~~~~----------------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~   86 (185)
                      +||||+.++.+.......     ..++........                ....+.+|||||++.+..+....+..+|+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi  552 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL  552 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence            499999999987774221     222222111110                01138999999999998888888889999


Q ss_pred             EEEEEeCCC---cccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--------------HHHHHHh--------
Q 029920           87 LVWVVDSSD---LRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--------------PTEIAKV--------  141 (185)
Q Consensus        87 ~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--------------~~~~~~~--------  141 (185)
                      +++|+|+++   +.++..+    . .+..   .++|+++++||+|+.....              ..+....        
T Consensus       553 vlLVVDa~~Gi~~qT~e~I----~-~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v  624 (1049)
T PRK14845        553 AVLVVDINEGFKPQTIEAI----N-ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL  624 (1049)
T ss_pred             EEEEEECcccCCHhHHHHH----H-HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            999999986   3333322    2 2222   2689999999999853211              0111110        


Q ss_pred             ---cCcccc---------cCccceEEEeecccCCCCHHHHHHHHHHHH
Q 029920          142 ---LNLEAM---------DKTRHWKIVGCSAYTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       142 ---~~~~~~---------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (185)
                         +....+         ......+++++||++|.|+++|...|....
T Consensus       625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~  672 (1049)
T PRK14845        625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA  672 (1049)
T ss_pred             hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence               111110         112467899999999999999999886544

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.57  E-value=9.9e-15  Score=104.67  Aligned_cols=118  Identities=19%  Similarity=0.231  Sum_probs=75.6

Q ss_pred             eEEEEEEcCCchh-h-----HHHHHhhh--cCCCEEEEEEeCCC---cccHHHHHHHHHHHHhccccCCCeEEEEeecCC
Q 029920           60 YTLNIWDVGGQRT-I-----RSYWRNYF--EQTDGLVWVVDSSD---LRRLDDCKMELDNLLKEERLSGASLLILANKQD  128 (185)
Q Consensus        60 ~~~~~~D~~g~~~-~-----~~~~~~~~--~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D  128 (185)
                      ..+.++||||+-+ |     .......+  ....+++||+|..+   +.+|-.-.-+-..++..   .+.|+|+++||+|
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~D  192 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKTD  192 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEeccc
Confidence            6799999999643 2     11222222  24467888998654   44554433333444443   3799999999999


Q ss_pred             CCCCCCHHHHHHhc----------------------CcccccCccceEEEeecccCCCCHHHHHHHHHHHHhhh
Q 029920          129 INGALTPTEIAKVL----------------------NLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       129 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (185)
                      +.+..-..++...+                      .+....+.++...+.+|+.+|.|.+++|..+...+.+.
T Consensus       193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy  266 (366)
T KOG1532|consen  193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY  266 (366)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence            98764443332222                      11112224567789999999999999999988877553

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.56  E-value=2.7e-14  Score=118.29  Aligned_cols=116  Identities=19%  Similarity=0.105  Sum_probs=80.1

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHhCC---------------CCcc----cccCcceEE----EEEEEcCeEEEEEEc
Q 029920           11 KKKEKEMRILMVGLDNSGKTTIVLKINGE---------------DTSV----ISPTLGFNI----KTVTYQKYTLNIWDV   67 (185)
Q Consensus        11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~---------------~~~~----~~~t~~~~~----~~~~~~~~~~~~~D~   67 (185)
                      ...++..+|+++|+.++|||||+++|...               .+..    ...|+....    ..+.++++.+.++||
T Consensus        14 ~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDT   93 (720)
T TIGR00490        14 WKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDT   93 (720)
T ss_pred             hCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeC
Confidence            33455679999999999999999998642               1111    112332211    124556789999999


Q ss_pred             CCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC
Q 029920           68 GGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING  131 (185)
Q Consensus        68 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  131 (185)
                      ||+..+.......++.+|++++|+|+.+.-..+. ...+....    ..+.|.++++||+|...
T Consensus        94 PG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~----~~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        94 PGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQAL----KENVKPVLFINKVDRLI  152 (720)
T ss_pred             CCccccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHH----HcCCCEEEEEEChhccc
Confidence            9999988888889999999999999987422221 12222222    23678899999999854

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.56  E-value=1.5e-14  Score=111.31  Aligned_cols=163  Identities=13%  Similarity=0.098  Sum_probs=112.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCeEEEEEEcCCch-----hhHHHHH----hh
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKYTLNIWDVGGQR-----TIRSYWR----NY   80 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~----~~   80 (185)
                      ..+..++++||.||+||||+++.+......   ....|.......+.+....++++||||.-     ....+-.    ..
T Consensus       165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL  244 (620)
T KOG1490|consen  165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL  244 (620)
T ss_pred             CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence            445678999999999999999988776652   44556667777788888999999999932     1111111    11


Q ss_pred             hcCCCEEEEEEeCCC--cccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEee
Q 029920           81 FEQTDGLVWVVDSSD--LRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGC  158 (185)
Q Consensus        81 ~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (185)
                      ..--.+|+|+.|++.  ..|.....+.+..+....  .|.|+|+|+||+|........+..+.+-.. ......++++.+
T Consensus       245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF--aNK~~IlvlNK~D~m~~edL~~~~~~ll~~-~~~~~~v~v~~t  321 (620)
T KOG1490|consen  245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF--ANKVTILVLNKIDAMRPEDLDQKNQELLQT-IIDDGNVKVVQT  321 (620)
T ss_pred             HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh--cCCceEEEeecccccCccccCHHHHHHHHH-HHhccCceEEEe
Confidence            122357888999885  567777777777664433  489999999999986654444333222211 112255889999


Q ss_pred             cccCCCCHHHHHHHHHHHHh
Q 029920          159 SAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      |+.+..|+.++....++.+.
T Consensus       322 S~~~eegVm~Vrt~ACe~LL  341 (620)
T KOG1490|consen  322 SCVQEEGVMDVRTTACEALL  341 (620)
T ss_pred             cccchhceeeHHHHHHHHHH
Confidence            99999999888877776553

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.56  E-value=2.3e-13  Score=99.16  Aligned_cols=119  Identities=18%  Similarity=0.197  Sum_probs=76.6

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCcccc----cCcceEEEEEEEcCeEEEEEEcCCchhhHH----------HH
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTSVIS----PTLGFNIKTVTYQKYTLNIWDVGGQRTIRS----------YW   77 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~   77 (185)
                      .....++|+|+|.+|+|||||+|+|.+......+    .|..........++..+.++||||......          ..
T Consensus        27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I  106 (249)
T cd01853          27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI  106 (249)
T ss_pred             hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence            3566799999999999999999999998764332    233333334456788999999999654310          12


Q ss_pred             Hhhhc--CCCEEEEEEeCCCcc-cHH--HHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           78 RNYFE--QTDGLVWVVDSSDLR-RLD--DCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        78 ~~~~~--~~d~~i~v~d~~~~~-s~~--~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      ..++.  ..|++++|..++... +..  .+.+.+.+.+....  -.++++|+||+|...+
T Consensus       107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i--~~~~ivV~T~~d~~~p  164 (249)
T cd01853         107 KRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSI--WRNAIVVLTHAASSPP  164 (249)
T ss_pred             HHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhh--HhCEEEEEeCCccCCC
Confidence            22333  578888887666421 222  23333444332211  2569999999997644

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.54  E-value=5.7e-13  Score=98.76  Aligned_cols=117  Identities=20%  Similarity=0.242  Sum_probs=74.4

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccC----cceEEEEEEEcCeEEEEEEcCCchhhHHH-------HHhhh
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPT----LGFNIKTVTYQKYTLNIWDVGGQRTIRSY-------WRNYF   81 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~~~   81 (185)
                      ..+.++|+++|.+|+||||++|++.+......+..    ..........++..+.++||||..+....       ...++
T Consensus        35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l  114 (313)
T TIGR00991        35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL  114 (313)
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence            34678999999999999999999999876433221    22222334457889999999996643221       11112


Q ss_pred             --cCCCEEEEEEeCCCc--ccH-HHHHHHHHHHHhccccCCCeEEEEeecCCCCC
Q 029920           82 --EQTDGLVWVVDSSDL--RRL-DDCKMELDNLLKEERLSGASLLILANKQDING  131 (185)
Q Consensus        82 --~~~d~~i~v~d~~~~--~s~-~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  131 (185)
                        ...|+++||.+++..  ... ..+.+.+...+...  --.++|+++|++|...
T Consensus       115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~~  167 (313)
T TIGR00991       115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFSP  167 (313)
T ss_pred             hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccCC
Confidence              268999999665432  212 23334444443221  1257999999999753

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.52  E-value=1.1e-13  Score=100.30  Aligned_cols=115  Identities=16%  Similarity=0.041  Sum_probs=59.8

Q ss_pred             EEEEEEcCCchhhHHHHHhhh--------cCCCEEEEEEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEeecCCCCC
Q 029920           61 TLNIWDVGGQRTIRSYWRNYF--------EQTDGLVWVVDSSDLRRLDDC-KMELDNLLKEERLSGASLLILANKQDING  131 (185)
Q Consensus        61 ~~~~~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  131 (185)
                      .+.++|||||.++...+...-        ...-++++++|+....+.... ...+...... ...+.|.+.|+||+|+.+
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~-~~~~lP~vnvlsK~Dl~~  170 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIM-LRLELPHVNVLSKIDLLS  170 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHH-HHHTSEEEEEE--GGGS-
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHH-hhCCCCEEEeeeccCccc
Confidence            799999999988766544333        345678889998754332222 1222222111 123799999999999976


Q ss_pred             CCC--------------------HHHHHHhcCcccccCccce-EEEeecccCCCCHHHHHHHHHHHH
Q 029920          132 ALT--------------------PTEIAKVLNLEAMDKTRHW-KIVGCSAYTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       132 ~~~--------------------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~  177 (185)
                      ...                    .......+... +...... +++++|+.++.++++++..+-+.+
T Consensus       171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~-l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAEL-LDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHH-CCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH-HhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            220                    11111111111 2222344 799999999999999998876654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.52  E-value=1.6e-13  Score=115.34  Aligned_cols=115  Identities=20%  Similarity=0.187  Sum_probs=81.0

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHhCCCCc---------c----------cccCcceEEEEEEE--------------
Q 029920           11 KKKEKEMRILMVGLDNSGKTTIVLKINGEDTS---------V----------ISPTLGFNIKTVTY--------------   57 (185)
Q Consensus        11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~---------~----------~~~t~~~~~~~~~~--------------   57 (185)
                      ...++..+|+|+|+.++|||||+++|....-.         .          ...|+......+.+              
T Consensus        14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~   93 (843)
T PLN00116         14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGER   93 (843)
T ss_pred             hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccccc
Confidence            34566778999999999999999998643310         0          00111111112222              


Q ss_pred             --cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC
Q 029920           58 --QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN  130 (185)
Q Consensus        58 --~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  130 (185)
                        +++.++++||||+.+|.......++.+|++|+|+|+.+.-.... ...|.....    .++|+++++||+|..
T Consensus        94 ~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~  163 (843)
T PLN00116         94 DGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC  163 (843)
T ss_pred             CCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence              25788999999999999888999999999999999987533222 233344333    379999999999986

>PTZ00416 elongation factor 2; Provisional

Probab=99.52  E-value=1.5e-13  Score=115.31  Aligned_cols=113  Identities=18%  Similarity=0.210  Sum_probs=79.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcc---------cc----------cCcceEEEEEEEc----------CeEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSV---------IS----------PTLGFNIKTVTYQ----------KYTLN   63 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~---------~~----------~t~~~~~~~~~~~----------~~~~~   63 (185)
                      .++..+|+++|+.++|||||+++|....-..         ..          -|+......+.+.          +..+.
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            5566799999999999999999987532110         00          0111111123332          56799


Q ss_pred             EEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC
Q 029920           64 IWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN  130 (185)
Q Consensus        64 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  130 (185)
                      ++||||+.+|.......++.+|++++|+|+.+.-..+ ....+.....    .++|+++++||+|+.
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~----~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ----ERIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH----cCCCEEEEEEChhhh
Confidence            9999999999888888899999999999998743322 2233333333    368999999999986

>PTZ00258 GTP-binding protein; Provisional

Probab=99.50  E-value=1.1e-12  Score=100.62  Aligned_cols=85  Identities=21%  Similarity=0.285  Sum_probs=58.9

Q ss_pred             hhccCceeEEEEEcCCCCChHHHHHHHhCCCCcc---cccCcceEEEEEEEc-----------------CeEEEEEEcCC
Q 029920           10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSV---ISPTLGFNIKTVTYQ-----------------KYTLNIWDVGG   69 (185)
Q Consensus        10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~---~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g   69 (185)
                      ..+....++|+++|.||+|||||+|+|.+.....   ...|.......+.+.                 ..++.++|+||
T Consensus        15 ~~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpG   94 (390)
T PTZ00258         15 LGRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAG   94 (390)
T ss_pred             hccCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCC
Confidence            3446677899999999999999999998765521   222333333333332                 23589999999


Q ss_pred             chh-------hHHHHHhhhcCCCEEEEEEeCC
Q 029920           70 QRT-------IRSYWRNYFEQTDGLVWVVDSS   94 (185)
Q Consensus        70 ~~~-------~~~~~~~~~~~~d~~i~v~d~~   94 (185)
                      ...       ........++.+|++++|+|+.
T Consensus        95 Lv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         95 LVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             cCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            431       3334445578899999999984

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=2.6e-13  Score=106.13  Aligned_cols=154  Identities=19%  Similarity=0.220  Sum_probs=102.2

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCC--------------------CC--------------cccccCcceEEEEEEE
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGE--------------------DT--------------SVISPTLGFNIKTVTY   57 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~--------------------~~--------------~~~~~t~~~~~~~~~~   57 (185)
                      .....+..+|+|+.++|||||+.+|...                    +.              +..+-|+.+....++.
T Consensus       173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes  252 (603)
T KOG0458|consen  173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES  252 (603)
T ss_pred             CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence            3556789999999999999999887320                    00              0111133333444555


Q ss_pred             cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCc---ccHHH--HHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           58 QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL---RRLDD--CKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        58 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~--~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      ....+.++|.||+..|..........+|+.++|+|++-.   ..|+.  .......+++...  -..+||++||.|+.+.
T Consensus       253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~W  330 (603)
T KOG0458|consen  253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSW  330 (603)
T ss_pred             CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCc
Confidence            678999999999999998888888999999999999852   22221  1122233344333  3568999999999876


Q ss_pred             CCHH--HHH----Hhc-CcccccCccceEEEeecccCCCCHHH
Q 029920          133 LTPT--EIA----KVL-NLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus       133 ~~~~--~~~----~~~-~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      .+.+  ++.    ..+ ....+.. ..+.|++||+..|+|+-.
T Consensus       331 sq~RF~eIk~~l~~fL~~~~gf~e-s~v~FIPiSGl~GeNL~k  372 (603)
T KOG0458|consen  331 SQDRFEEIKNKLSSFLKESCGFKE-SSVKFIPISGLSGENLIK  372 (603)
T ss_pred             cHHHHHHHHHHHHHHHHHhcCccc-CCcceEecccccCCcccc
Confidence            4332  222    233 2222333 456899999999998854

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=5.2e-13  Score=106.94  Aligned_cols=160  Identities=22%  Similarity=0.203  Sum_probs=105.6

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCccc-----ccCcceEEEEEE----------------EcCeEEEEEEcCCch
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVI-----SPTLGFNIKTVT----------------YQKYTLNIWDVGGQR   71 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~-----~~t~~~~~~~~~----------------~~~~~~~~~D~~g~~   71 (185)
                      .-+.+-+||+|+..+|||-|+..+.+.+....     ...++.++....                +.---+.++||||++
T Consensus       472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE  551 (1064)
T KOG1144|consen  472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE  551 (1064)
T ss_pred             hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence            33456799999999999999999988665321     122222221111                111347899999999


Q ss_pred             hhHHHHHhhhcCCCEEEEEEeCCCc---ccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC-CCC----C---------
Q 029920           72 TIRSYWRNYFEQTDGLVWVVDSSDL---RRLDDCKMELDNLLKEERLSGASLLILANKQDIN-GAL----T---------  134 (185)
Q Consensus        72 ~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~-~~~----~---------  134 (185)
                      .|..++.....-||..|+|+|+.+.   .+.+.     ..+++.   .+.|+||.+||+|.. ...    .         
T Consensus       552 sFtnlRsrgsslC~~aIlvvdImhGlepqtiES-----i~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ  623 (1064)
T KOG1144|consen  552 SFTNLRSRGSSLCDLAILVVDIMHGLEPQTIES-----INLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQ  623 (1064)
T ss_pred             hhhhhhhccccccceEEEEeehhccCCcchhHH-----HHHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHh
Confidence            9999999999999999999999863   33333     222333   379999999999943 210    0         


Q ss_pred             ----HHH-------HHHhcCccc-----ccC----ccceEEEeecccCCCCHHHHHHHHHHHHhhh
Q 029920          135 ----PTE-------IAKVLNLEA-----MDK----TRHWKIVGCSAYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       135 ----~~~-------~~~~~~~~~-----~~~----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (185)
                          ..+       +...++.+.     +..    ..-+.++++||..|.||.+|+.+|++.-+..
T Consensus       624 ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~  689 (1064)
T KOG1144|consen  624 KKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT  689 (1064)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence                001       111111111     111    1235689999999999999999999876544

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=2.6e-12  Score=95.19  Aligned_cols=160  Identities=19%  Similarity=0.170  Sum_probs=97.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc------ccccCcce----EEEEEE---------EcCeEEEEEEcCCchhh
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS------VISPTLGF----NIKTVT---------YQKYTLNIWDVGGQRTI   73 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~------~~~~t~~~----~~~~~~---------~~~~~~~~~D~~g~~~~   73 (185)
                      ..-++++.++|+..||||||.++|..-.-.      ..+.+.+.    ....+.         .+..++.++|.||+...
T Consensus         4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL   83 (522)
T KOG0461|consen    4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL   83 (522)
T ss_pred             CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence            345699999999999999999998643221      11111221    111221         13478999999999887


Q ss_pred             HHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhc------Ccccc
Q 029920           74 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVL------NLEAM  147 (185)
Q Consensus        74 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~------~~~~~  147 (185)
                      -........-.|..++|+|+.....-+.+.-.+.   ...  .....+||+||+|...+.......+..      ..+..
T Consensus        84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLii---g~~--~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t  158 (522)
T KOG0461|consen   84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLII---GEL--LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST  158 (522)
T ss_pred             HHHHHhhhheeeeeeEEEehhcccccccchhhhh---hhh--hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence            7666666677799999999986432222211111   111  134578888998865543322211111      11222


Q ss_pred             cCccceEEEeecccCC----CCHHHHHHHHHHHH
Q 029920          148 DKTRHWKIVGCSAYTG----EGLLEGFDWLVQDI  177 (185)
Q Consensus       148 ~~~~~~~~~~~Sa~~~----~~i~~l~~~l~~~~  177 (185)
                      ....+.|++++||..|    +++.++.+.|.+.+
T Consensus       159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i  192 (522)
T KOG0461|consen  159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESRI  192 (522)
T ss_pred             CcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence            3334589999999999    56666666665554

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=2.9e-12  Score=97.66  Aligned_cols=154  Identities=19%  Similarity=0.088  Sum_probs=111.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCc------ccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTS------VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      .|+-.|+-.-|||||+.++.+....      ...-|+...+......+....++|.||++++-......+...|..++|+
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV   81 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV   81 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence            4778899999999999999987663      2233555666666667779999999999999988888888999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHH
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFD  171 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (185)
                      |+++.-..+ ..+. ..++....  ....++|+||+|..+....+...........  ....+++.+|+.+|.||++|.+
T Consensus        82 ~~deGl~~q-tgEh-L~iLdllg--i~~giivltk~D~~d~~r~e~~i~~Il~~l~--l~~~~i~~~s~~~g~GI~~Lk~  155 (447)
T COG3276          82 AADEGLMAQ-TGEH-LLILDLLG--IKNGIIVLTKADRVDEARIEQKIKQILADLS--LANAKIFKTSAKTGRGIEELKN  155 (447)
T ss_pred             eCccCcchh-hHHH-HHHHHhcC--CCceEEEEeccccccHHHHHHHHHHHHhhcc--cccccccccccccCCCHHHHHH
Confidence            997532211 1111 22333322  3457999999999876444333333222111  3677889999999999999999


Q ss_pred             HHHHHH
Q 029920          172 WLVQDI  177 (185)
Q Consensus       172 ~l~~~~  177 (185)
                      .|.+..
T Consensus       156 ~l~~L~  161 (447)
T COG3276         156 ELIDLL  161 (447)
T ss_pred             HHHHhh
Confidence            999887

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.43  E-value=3.2e-12  Score=94.88  Aligned_cols=151  Identities=14%  Similarity=0.115  Sum_probs=100.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc------------------------------------ccccCcceEEEEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS------------------------------------VISPTLGFNIKTVT   56 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~------------------------------------~~~~t~~~~~~~~~   56 (185)
                      .+..+|.+-||...=||||||-+|....-.                                    +.+-|+.+.++.+.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            456789999999999999999998532110                                    11225555666667


Q ss_pred             EcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH-
Q 029920           57 YQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP-  135 (185)
Q Consensus        57 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-  135 (185)
                      ....+|.+.||||++.+...+.-....||+.|+++|+...  .......-..+.....  -..+++..||+||.+-.+. 
T Consensus        83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLLG--IrhvvvAVNKmDLvdy~e~~  158 (431)
T COG2895          83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLLG--IRHVVVAVNKMDLVDYSEEV  158 (431)
T ss_pred             cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHhC--CcEEEEEEeeecccccCHHH
Confidence            7788999999999999988887778889999999999642  2221111122222221  3568899999999865332 


Q ss_pred             -HHHHHhcCc-ccccCccceEEEeecccCCCCHH
Q 029920          136 -TEIAKVLNL-EAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus       136 -~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                       +++...+.. ...-......++++||..|.|+-
T Consensus       159 F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         159 FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence             233332211 11111244589999999999873

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.42  E-value=1.4e-12  Score=92.95  Aligned_cols=153  Identities=18%  Similarity=0.123  Sum_probs=84.9

Q ss_pred             HhhccCceeEEEEEcCCCCChHHHHHHHhCCCCc--c---c----c--------cCcceEEEEEE---------------
Q 029920            9 KIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTS--V---I----S--------PTLGFNIKTVT---------------   56 (185)
Q Consensus         9 ~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~--~---~----~--------~t~~~~~~~~~---------------   56 (185)
                      +...+.....|+++|++|+|||||++++......  .   .    .        ...+.....+.               
T Consensus        15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~   94 (207)
T TIGR00073        15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHA   94 (207)
T ss_pred             HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHH
Confidence            3444667889999999999999999998543110  0   0    0        00000000000               


Q ss_pred             -----EcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC
Q 029920           57 -----YQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING  131 (185)
Q Consensus        57 -----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  131 (185)
                           ..+..+.+++|.|.-....   .+-...+..+.|+|+.+.+...  ..       .......|.++++||+|+..
T Consensus        95 l~~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~--~~-------~~~~~~~a~iiv~NK~Dl~~  162 (207)
T TIGR00073        95 LEDLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKP--LK-------YPGMFKEADLIVINKADLAE  162 (207)
T ss_pred             HHHhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchh--hh-------hHhHHhhCCEEEEEHHHccc
Confidence                 0123566666666110000   1111235556677776533211  00       01112467899999999965


Q ss_pred             CCC--HHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHH
Q 029920          132 ALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       132 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (185)
                      ...  ..+....+...    ....+++++||+++.|++++++++.+..
T Consensus       163 ~~~~~~~~~~~~l~~~----~~~~~i~~~Sa~~g~gv~~l~~~i~~~~  206 (207)
T TIGR00073       163 AVGFDVEKMKADAKKI----NPEAEIILMSLKTGEGLDEWLEFLEGQV  206 (207)
T ss_pred             cchhhHHHHHHHHHHh----CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            322  22333332211    1457899999999999999999998754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=1.9e-12  Score=94.97  Aligned_cols=159  Identities=19%  Similarity=0.161  Sum_probs=106.5

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCccccc------Cc--c------------------eEEEEEEEcC------eE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISP------TL--G------------------FNIKTVTYQK------YT   61 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~------t~--~------------------~~~~~~~~~~------~~   61 (185)
                      ...++|.++|+..-|||||..+|.|--...-+.      ++  +                  .........+      ..
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            567999999999999999999997743321110      00  0                  0000011111      46


Q ss_pred             EEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC----HHH
Q 029920           62 LNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT----PTE  137 (185)
Q Consensus        62 ~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~----~~~  137 (185)
                      +.++|.||++-.-+.+.....-.|+.++|++++.+-.-....+.+..+ ....  -..++++=||+|+.+.+.    .++
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIig--ik~iiIvQNKIDlV~~E~AlE~y~q  164 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EIIG--IKNIIIVQNKIDLVSRERALENYEQ  164 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhhc--cceEEEEecccceecHHHHHHHHHH
Confidence            789999999987666666566679999999999854444444444443 2111  357999999999977533    233


Q ss_pred             HHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          138 IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      +.++..-. ++  .+.|++++||..+.|++.+++.|.+.+.
T Consensus       165 Ik~FvkGt-~A--e~aPIIPiSA~~~~NIDal~e~i~~~Ip  202 (415)
T COG5257         165 IKEFVKGT-VA--ENAPIIPISAQHKANIDALIEAIEKYIP  202 (415)
T ss_pred             HHHHhccc-cc--CCCceeeehhhhccCHHHHHHHHHHhCC
Confidence            44333321 11  4679999999999999999999998875

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.41  E-value=1.9e-12  Score=107.73  Aligned_cols=113  Identities=19%  Similarity=0.201  Sum_probs=77.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcc------------c-------ccCcceEEEEEEE----cCeEEEEEEcCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSV------------I-------SPTLGFNIKTVTY----QKYTLNIWDVGG   69 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~------------~-------~~t~~~~~~~~~~----~~~~~~~~D~~g   69 (185)
                      .++..+|+++|+.++|||||+++|+...-..            .       .-|+......+.+    .+..++++||||
T Consensus        17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG   96 (731)
T PRK07560         17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG   96 (731)
T ss_pred             hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence            4556679999999999999999986422100            0       0111111112222    467899999999


Q ss_pred             chhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC
Q 029920           70 QRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN  130 (185)
Q Consensus        70 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  130 (185)
                      +..|.......+..+|++++|+|+......+ ....+......    +.|.|+++||+|..
T Consensus        97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~~----~~~~iv~iNK~D~~  152 (731)
T PRK07560         97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALRE----RVKPVLFINKVDRL  152 (731)
T ss_pred             ccChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHHc----CCCeEEEEECchhh
Confidence            9999888888899999999999998743222 22333333232    56789999999975

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.41  E-value=5.9e-12  Score=95.67  Aligned_cols=78  Identities=22%  Similarity=0.286  Sum_probs=54.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcC-----------------eEEEEEEcCCchh----
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQK-----------------YTLNIWDVGGQRT----   72 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~----   72 (185)
                      ++|+++|.||+|||||+|+|++....   ....|.......+.+.+                 .++.++|+||...    
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            78999999999999999999987742   12234343333333322                 2589999999432    


Q ss_pred             ---hHHHHHhhhcCCCEEEEEEeCC
Q 029920           73 ---IRSYWRNYFEQTDGLVWVVDSS   94 (185)
Q Consensus        73 ---~~~~~~~~~~~~d~~i~v~d~~   94 (185)
                         ........++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence               2233444578999999999985

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.40  E-value=9.5e-12  Score=93.44  Aligned_cols=108  Identities=22%  Similarity=0.178  Sum_probs=65.3

Q ss_pred             cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHH
Q 029920           58 QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTE  137 (185)
Q Consensus        58 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~  137 (185)
                      .++.+.++||+|.....   ......+|.++++.+....   +.+......+      .++|.++++||+|+........
T Consensus       125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~  192 (300)
T TIGR00750       125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL------MEIADIYVVNKADGEGATNVTI  192 (300)
T ss_pred             CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH------hhhccEEEEEcccccchhHHHH
Confidence            35789999999954222   2345677888887543322   3322222222      2577899999999876543222


Q ss_pred             HHHhc--Ccccc-cC--ccceEEEeecccCCCCHHHHHHHHHHHH
Q 029920          138 IAKVL--NLEAM-DK--TRHWKIVGCSAYTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       138 ~~~~~--~~~~~-~~--~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (185)
                      ....+  ..... ..  ....+++++||+++.|++++++++.+..
T Consensus       193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~  237 (300)
T TIGR00750       193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK  237 (300)
T ss_pred             HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            11111  00011 11  0123689999999999999999998864

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.40  E-value=6e-12  Score=97.85  Aligned_cols=131  Identities=20%  Similarity=0.302  Sum_probs=94.7

Q ss_pred             CcceEEEEEEE-cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCc----------ccHHHHHHHHHHHHhcccc
Q 029920           47 TLGFNIKTVTY-QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL----------RRLDDCKMELDNLLKEERL  115 (185)
Q Consensus        47 t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~  115 (185)
                      |.|+....+.+ ++..+.++|++|+...+..|..++.+.+++|||+++++-          -.+.+....+..+......
T Consensus       222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~  301 (389)
T PF00503_consen  222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF  301 (389)
T ss_dssp             -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred             CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence            56666777788 889999999999999999999999999999999998742          2467778888999888777


Q ss_pred             CCCeEEEEeecCCCCCC--------------------CCHHHHHHhcCccc---ccCc---cceEEEeecccCCCCHHHH
Q 029920          116 SGASLLILANKQDINGA--------------------LTPTEIAKVLNLEA---MDKT---RHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus       116 ~~~~~ivv~nK~D~~~~--------------------~~~~~~~~~~~~~~---~~~~---~~~~~~~~Sa~~~~~i~~l  169 (185)
                      .+.|+||++||.|+...                    ...+.....+....   ....   ..+.+..++|.+..++..+
T Consensus       302 ~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v  381 (389)
T PF00503_consen  302 KNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKV  381 (389)
T ss_dssp             TTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHH
T ss_pred             ccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHH
Confidence            89999999999995321                    01111111111111   1111   4456778999999999999


Q ss_pred             HHHHHHHH
Q 029920          170 FDWLVQDI  177 (185)
Q Consensus       170 ~~~l~~~~  177 (185)
                      |+.+.+.+
T Consensus       382 ~~~v~~~i  389 (389)
T PF00503_consen  382 FNAVKDII  389 (389)
T ss_dssp             HHHHHHHH
T ss_pred             HHHhcCcC
Confidence            98887654

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>TIGR00101 ureG urease accessory protein UreG

Probab=99.40  E-value=3.3e-12  Score=90.33  Aligned_cols=101  Identities=17%  Similarity=0.194  Sum_probs=61.8

Q ss_pred             eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeE--EEEeecCCCCCC--CCH
Q 029920           60 YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL--LILANKQDINGA--LTP  135 (185)
Q Consensus        60 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~--ivv~nK~D~~~~--~~~  135 (185)
                      ....++++.|..-......   .-+|.++.|+|+.+.++...  ..         ..++..  ++++||+|+.+.  ...
T Consensus        92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~---------~~qi~~ad~~~~~k~d~~~~~~~~~  157 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KG---------GPGITRSDLLVINKIDLAPMVGADL  157 (199)
T ss_pred             CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hh---------HhHhhhccEEEEEhhhccccccccH
Confidence            4566777777321111111   12578999999987544221  00         012334  899999999753  223


Q ss_pred             HHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          136 TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      +.+.+.....    ....+++++||++|.|++++++++.+.+.
T Consensus       158 ~~~~~~~~~~----~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       158 GVMERDAKKM----RGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             HHHHHHHHHh----CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            3333322221    14678999999999999999999987654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.38  E-value=9.6e-12  Score=94.60  Aligned_cols=159  Identities=14%  Similarity=0.189  Sum_probs=80.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCccc-ccCc---c--eEEEEEEEc-CeEEEEEEcCCchhhHHHHHhh-----
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVI-SPTL---G--FNIKTVTYQ-KYTLNIWDVGGQRTIRSYWRNY-----   80 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~-~~t~---~--~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~-----   80 (185)
                      ...+++|+|+|.+|+|||||||+|.|-..... ....   .  .....+... .-.+.+||.||..........|     
T Consensus        32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~  111 (376)
T PF05049_consen   32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVK  111 (376)
T ss_dssp             HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred             hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence            45679999999999999999999987543211 1111   1  111222222 2469999999965544444444     


Q ss_pred             hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC---------CCCCHH----HHHHhcCccc-
Q 029920           81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN---------GALTPT----EIAKVLNLEA-  146 (185)
Q Consensus        81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~---------~~~~~~----~~~~~~~~~~-  146 (185)
                      +...|.+|++.+-    .|....-++...+...   ++|+.+|-+|+|..         .....+    ++.+.+.... 
T Consensus       112 ~~~yD~fiii~s~----rf~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~  184 (376)
T PF05049_consen  112 FYRYDFFIIISSE----RFTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQ  184 (376)
T ss_dssp             GGG-SEEEEEESS----S--HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHH
T ss_pred             ccccCEEEEEeCC----CCchhhHHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHH
Confidence            4567988887654    3544444444444443   79999999999951         111211    2222221111 


Q ss_pred             ccCccceEEEeecccCCC--CHHHHHHHHHHHHh
Q 029920          147 MDKTRHWKIVGCSAYTGE--GLLEGFDWLVQDIA  178 (185)
Q Consensus       147 ~~~~~~~~~~~~Sa~~~~--~i~~l~~~l~~~~~  178 (185)
                      -......++|-+|+.+-.  +...|.+.|.+-+.
T Consensus       185 k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp  218 (376)
T PF05049_consen  185 KAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLP  218 (376)
T ss_dssp             CTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred             HcCCCcCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence            112245678999998754  57777777776554

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>cd01900 YchF YchF subfamily

Probab=99.38  E-value=6.2e-12  Score=92.59  Aligned_cols=76  Identities=22%  Similarity=0.275  Sum_probs=53.1

Q ss_pred             EEEEcCCCCChHHHHHHHhCCCCcc---cccCcceEEEEEEEcC-----------------eEEEEEEcCCch-------
Q 029920           19 ILMVGLDNSGKTTIVLKINGEDTSV---ISPTLGFNIKTVTYQK-----------------YTLNIWDVGGQR-------   71 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~~~~~~---~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~-------   71 (185)
                      |+++|.||+|||||+|+|++.....   ...|.......+.+.+                 .++.++|+||..       
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            5799999999999999999977631   2334444444444432                 259999999932       


Q ss_pred             hhHHHHHhhhcCCCEEEEEEeCC
Q 029920           72 TIRSYWRNYFEQTDGLVWVVDSS   94 (185)
Q Consensus        72 ~~~~~~~~~~~~~d~~i~v~d~~   94 (185)
                      .........++.+|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            22333444568899999999974

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.35  E-value=7.4e-12  Score=89.09  Aligned_cols=155  Identities=18%  Similarity=0.178  Sum_probs=101.4

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCeEEEEEEcCCchh-------hHHHHHhhhc
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKYTLNIWDVGGQRT-------IRSYWRNYFE   82 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~   82 (185)
                      ++..-+|+++|.|.+|||||+..+..-+-.   ....|.......+.+++-.+++.|.||.-+       ...+.....+
T Consensus        59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavAr  138 (364)
T KOG1486|consen   59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVAR  138 (364)
T ss_pred             ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEee
Confidence            345679999999999999999999865543   223444455566888999999999999433       2233444567


Q ss_pred             CCCEEEEEEeCCCcccHHHHH-H----------------------------------------HHHHHHhcc--------
Q 029920           83 QTDGLVWVVDSSDLRRLDDCK-M----------------------------------------ELDNLLKEE--------  113 (185)
Q Consensus        83 ~~d~~i~v~d~~~~~s~~~~~-~----------------------------------------~~~~~~~~~--------  113 (185)
                      .+|.++.|.|++..+.-.... .                                        .+..++...        
T Consensus       139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl  218 (364)
T KOG1486|consen  139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVL  218 (364)
T ss_pred             cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEE
Confidence            899999999998754211111 0                                        111111100        


Q ss_pred             ----------------ccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHH
Q 029920          114 ----------------RLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       114 ----------------~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (185)
                                      .....+++.|-||+|..+-   +++.. ++       .....+.+|+.-+.|++.+++.+.+.+
T Consensus       219 ~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~---eevdr-lA-------r~PnsvViSC~m~lnld~lle~iWe~l  287 (364)
T KOG1486|consen  219 FREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSI---EEVDR-LA-------RQPNSVVISCNMKLNLDRLLERIWEEL  287 (364)
T ss_pred             EecCCChHHHHHHHhccceEEEEEEEeeccceecH---HHHHH-Hh-------cCCCcEEEEeccccCHHHHHHHHHHHh
Confidence                            0012467888899997543   22222 22       223458899999999999999998876


Q ss_pred             h
Q 029920          178 A  178 (185)
Q Consensus       178 ~  178 (185)
                      .
T Consensus       288 ~  288 (364)
T KOG1486|consen  288 N  288 (364)
T ss_pred             c
Confidence            4

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.35  E-value=5.7e-12  Score=92.62  Aligned_cols=152  Identities=22%  Similarity=0.245  Sum_probs=102.6

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCC---cccccCcceEEEEEEE-cCeEEEEEEcCCc---------hhhHHHHH
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDT---SVISPTLGFNIKTVTY-QKYTLNIWDVGGQ---------RTIRSYWR   78 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~---~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~---------~~~~~~~~   78 (185)
                      ......-|+|+|-.|||||||+++|++-..   .....|...+.+.... ++..+.+.||.|.         ..|.+..+
T Consensus       174 ~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLe  253 (410)
T KOG0410|consen  174 EGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLE  253 (410)
T ss_pred             ccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHH
Confidence            345567899999999999999999985444   2445566666665554 4467888999993         33444443


Q ss_pred             hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe----EEEEeecCCCCCCCCHHHHHHhcCcccccCccceE
Q 029920           79 NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS----LLILANKQDINGALTPTEIAKVLNLEAMDKTRHWK  154 (185)
Q Consensus        79 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (185)
                      . ...+|.++-|.|+++|..-.. .......+.....+..|    ++=|=||+|..+.....+-            +.  
T Consensus       254 e-VaeadlllHvvDiShP~ae~q-~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E~------------n~--  317 (410)
T KOG0410|consen  254 E-VAEADLLLHVVDISHPNAEEQ-RETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEEK------------NL--  317 (410)
T ss_pred             H-HhhcceEEEEeecCCccHHHH-HHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcccc------------CC--
Confidence            3 467999999999999864333 33344455554443333    5566677776544222111            11  


Q ss_pred             EEeecccCCCCHHHHHHHHHHHHhh
Q 029920          155 IVGCSAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       155 ~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                      -+.+||++|.|++++.+.+-..+..
T Consensus       318 ~v~isaltgdgl~el~~a~~~kv~~  342 (410)
T KOG0410|consen  318 DVGISALTGDGLEELLKAEETKVAS  342 (410)
T ss_pred             ccccccccCccHHHHHHHHHHHhhh
Confidence            5889999999999999988777654

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=2.3e-11  Score=92.64  Aligned_cols=114  Identities=19%  Similarity=0.263  Sum_probs=82.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHh--CCCCc-------------ccc------c----CcceEEEEEEEcCeEEEEEEc
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKIN--GEDTS-------------VIS------P----TLGFNIKTVTYQKYTLNIWDV   67 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~--~~~~~-------------~~~------~----t~~~~~~~~~~~~~~~~~~D~   67 (185)
                      -.++.+.+|+-+|.+|||||-+.|.  |+.+.             ..+      .    ++......+.+++..+++.||
T Consensus         9 v~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDT   88 (528)
T COG4108           9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDT   88 (528)
T ss_pred             HhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCC
Confidence            4455678899999999999998862  22221             011      1    222445567889999999999


Q ss_pred             CCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC
Q 029920           68 GGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING  131 (185)
Q Consensus        68 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  131 (185)
                      ||++.|..-.-..+..+|.++.|+|+...-.-+  .   .+++.-+...++|++-++||.|...
T Consensus        89 PGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~q--T---~KLfeVcrlR~iPI~TFiNKlDR~~  147 (528)
T COG4108          89 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQ--T---LKLFEVCRLRDIPIFTFINKLDREG  147 (528)
T ss_pred             CCccccchhHHHHHHhhheeeEEEecccCccHH--H---HHHHHHHhhcCCceEEEeecccccc
Confidence            999999988888889999999999998642212  1   2223333445899999999999764

>smart00053 DYNc Dynamin, GTPase

Probab=99.34  E-value=1.2e-10  Score=84.30  Aligned_cols=138  Identities=15%  Similarity=0.140  Sum_probs=79.6

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccc-------c-------CcceEEE--------------------------
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVIS-------P-------TLGFNIK--------------------------   53 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~-------~-------t~~~~~~--------------------------   53 (185)
                      -..++++|+|+.|+||||+++++.+..+....       |       .......                          
T Consensus        24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~  103 (240)
T smart00053       24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV  103 (240)
T ss_pred             CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence            35678999999999999999999886521000       0       0000000                          


Q ss_pred             ------------EEEE---cCeEEEEEEcCCchh-------------hHHHHHhhhc-CCCEEEEEEeCCCcccHHHHHH
Q 029920           54 ------------TVTY---QKYTLNIWDVGGQRT-------------IRSYWRNYFE-QTDGLVWVVDSSDLRRLDDCKM  104 (185)
Q Consensus        54 ------------~~~~---~~~~~~~~D~~g~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~  104 (185)
                                  .+++   +-..+.++||||...             ...+...|++ ..+++++|+|+...-.-.....
T Consensus       104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~  183 (240)
T smart00053      104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK  183 (240)
T ss_pred             cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence                        0011   115789999999531             2235566777 4468999999875211112112


Q ss_pred             HHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEe
Q 029920          105 ELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVG  157 (185)
Q Consensus       105 ~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      ..+.+    ...+.|+++|+||+|..+....  +...+..+.....++|..+.
T Consensus       184 ia~~l----d~~~~rti~ViTK~D~~~~~~~--~~~~~~~~~~~l~~g~~~v~  230 (240)
T smart00053      184 LAKEV----DPQGERTIGVITKLDLMDEGTD--ARDILENKLLPLRRGYIGVV  230 (240)
T ss_pred             HHHHH----HHcCCcEEEEEECCCCCCccHH--HHHHHhCCccccCCCEEEEE
Confidence            11222    2237899999999998764322  44444444444345555443

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.34  E-value=3.3e-11  Score=88.74  Aligned_cols=164  Identities=17%  Similarity=0.211  Sum_probs=105.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEE----cCeEEEEEEcCCchhhHHHHHhhhcCC----CEE
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTY----QKYTLNIWDVGGQRTIRSYWRNYFEQT----DGL   87 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~----d~~   87 (185)
                      .-+|+|+|+.++|||||+.+|.+........-.++-+-.+..    +-..+.+|-.-|......+....+...    ..+
T Consensus        52 gk~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlv  131 (473)
T KOG3905|consen   52 GKNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLV  131 (473)
T ss_pred             CCeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEE
Confidence            457999999999999999999998744443333333332222    225788999988877677766666443    578


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhcc------------------------------c-----------------------
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEE------------------------------R-----------------------  114 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~------------------------------~-----------------------  114 (185)
                      |++.|+++|..+-+..+.|..++...                              .                       
T Consensus       132 iltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llP  211 (473)
T KOG3905|consen  132 ILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLP  211 (473)
T ss_pred             EEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccccc
Confidence            89999999854433322222221100                              0                       


Q ss_pred             --------cCCCeEEEEeecCCCCCCCC-----HHHHHHhcC--cccccCccceEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920          115 --------LSGASLLILANKQDINGALT-----PTEIAKVLN--LEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       115 --------~~~~~~ivv~nK~D~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                              .-++|++||.+|||...-.+     ..+-..+++  .-.++...+...+.+|++...||+-+...|++....
T Consensus       212 L~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG  291 (473)
T KOG3905|consen  212 LGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYG  291 (473)
T ss_pred             cCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcC
Confidence                    01578999999999843211     111111111  112333467789999999999999999998887643

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.34  E-value=5.5e-11  Score=90.84  Aligned_cols=142  Identities=17%  Similarity=0.171  Sum_probs=83.0

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCC----CCc-----------ccccCcc-------eEE---EEEEE-----cCeE
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGE----DTS-----------VISPTLG-------FNI---KTVTY-----QKYT   61 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~----~~~-----------~~~~t~~-------~~~---~~~~~-----~~~~   61 (185)
                      +-...+-|+|+|+.++|||||+|+|.+.    ...           ..++..|       ...   +.+++     -..+
T Consensus        13 RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~   92 (492)
T TIGR02836        13 RTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFK   92 (492)
T ss_pred             HhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCccc
Confidence            3556899999999999999999999887    333           2222222       112   22222     2368


Q ss_pred             EEEEEcCCchh--------hHH---------------------HHHhhhc-CCCEEEEEE-eCC----CcccHHHHHHHH
Q 029920           62 LNIWDVGGQRT--------IRS---------------------YWRNYFE-QTDGLVWVV-DSS----DLRRLDDCKMEL  106 (185)
Q Consensus        62 ~~~~D~~g~~~--------~~~---------------------~~~~~~~-~~d~~i~v~-d~~----~~~s~~~~~~~~  106 (185)
                      ++++||+|-..        -..                     =.+..+. ++|+.++|. |.+    .++.+......+
T Consensus        93 VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~  172 (492)
T TIGR02836        93 VRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERV  172 (492)
T ss_pred             EEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHH
Confidence            99999999111        000                     0334455 899999998 775    123344433333


Q ss_pred             HHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccC
Q 029920          107 DNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYT  162 (185)
Q Consensus       107 ~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (185)
                      ...++.   .++|+++++||.|..... ..++...+.. .    .+.|++.+|+..
T Consensus       173 i~eLk~---~~kPfiivlN~~dp~~~e-t~~l~~~l~e-k----y~vpvl~v~c~~  219 (492)
T TIGR02836       173 IEELKE---LNKPFIILLNSTHPYHPE-TEALRQELEE-K----YDVPVLAMDVES  219 (492)
T ss_pred             HHHHHh---cCCCEEEEEECcCCCCch-hHHHHHHHHH-H----hCCceEEEEHHH
Confidence            333333   389999999999944322 2222222211 1    345667776654

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=1.9e-11  Score=99.99  Aligned_cols=115  Identities=24%  Similarity=0.214  Sum_probs=84.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCC--cc---------c----------ccCcceEEEEEEEcC-eEEEEEEcCCc
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDT--SV---------I----------SPTLGFNIKTVTYQK-YTLNIWDVGGQ   70 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~--~~---------~----------~~t~~~~~~~~~~~~-~~~~~~D~~g~   70 (185)
                      .++..+|+++|+-.+|||||..++.-..-  ..         .          .-|+......+.+.+ +.++++||||+
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            55678899999999999999999742111  00         0          112223333567785 99999999999


Q ss_pred             hhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           71 RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        71 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      -+|.......++-+|++++|+|+...-..+. ...|++..+    .++|.++++||+|....
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QT-Etv~rqa~~----~~vp~i~fiNKmDR~~a  143 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQT-ETVWRQADK----YGVPRILFVNKMDRLGA  143 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecH-HHHHHHHhh----cCCCeEEEEECcccccc
Confidence            9999999999999999999999997544333 223344333    47999999999997654

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.32  E-value=7.2e-12  Score=91.37  Aligned_cols=95  Identities=17%  Similarity=0.105  Sum_probs=70.5

Q ss_pred             hhhHHHHHhhhcCCCEEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHH-HHHHhcCccccc
Q 029920           71 RTIRSYWRNYFEQTDGLVWVVDSSDLR-RLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPT-EIAKVLNLEAMD  148 (185)
Q Consensus        71 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~  148 (185)
                      +++..+...+++++|.+++|+|++++. ++..+..|+..+..    .++|+++|+||+|+.+..... +....+     .
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~-----~   94 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIY-----R   94 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHH-----H
Confidence            445555666889999999999999877 88888887765432    479999999999996532221 222222     1


Q ss_pred             CccceEEEeecccCCCCHHHHHHHHHH
Q 029920          149 KTRHWKIVGCSAYTGEGLLEGFDWLVQ  175 (185)
Q Consensus       149 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (185)
                      . .+.+++.+||++|.|++++++.+.+
T Consensus        95 ~-~g~~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        95 N-IGYQVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             H-CCCeEEEEecCCchhHHHHHhhhcC
Confidence            2 4568999999999999999988764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.30  E-value=1.2e-11  Score=86.81  Aligned_cols=160  Identities=21%  Similarity=0.316  Sum_probs=103.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCC----CcccccCcceEEEEEEE-cCeEEEEEEcCCchhhHH-----HHHhhhcCCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGED----TSVISPTLGFNIKTVTY-QKYTLNIWDVGGQRTIRS-----YWRNYFEQTD   85 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~----~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~-----~~~~~~~~~d   85 (185)
                      .-||+++|.+|+|||++=..+..+.    ....+.|+.++-..+++ ++..+.+||.+|++.+-.     .....+...+
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~   83 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ   83 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence            3589999999999999877666544    34556677776666665 558999999999985432     2334578899


Q ss_pred             EEEEEEeCCCcccHH---HHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcC--cccccCccceEEEeecc
Q 029920           86 GLVWVVDSSDLRRLD---DCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLN--LEAMDKTRHWKIVGCSA  160 (185)
Q Consensus        86 ~~i~v~d~~~~~s~~---~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Sa  160 (185)
                      ++++|+|+...+-..   ....-+..+++  ..|...+.+.++|.|+......+.+-+.-.  .........+.++++|.
T Consensus        84 vli~vFDves~e~~~D~~~yqk~Le~ll~--~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi  161 (295)
T KOG3886|consen   84 VLIYVFDVESREMEKDFHYYQKCLEALLQ--NSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI  161 (295)
T ss_pred             eeeeeeeccchhhhhhHHHHHHHHHHHHh--cCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence            999999998754222   22223333333  345678999999999976544443222111  11122235577888887


Q ss_pred             cCCCCHHHHHHHHHHHHh
Q 029920          161 YTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~  178 (185)
                      .+.. +...|..+.....
T Consensus       162 wDet-l~KAWS~iv~~li  178 (295)
T KOG3886|consen  162 WDET-LYKAWSSIVYNLI  178 (295)
T ss_pred             hhHH-HHHHHHHHHHhhC
Confidence            7653 5555665555443

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.29  E-value=6.7e-12  Score=89.65  Aligned_cols=150  Identities=17%  Similarity=0.107  Sum_probs=99.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcc---cccCcceEEEEEEEcCeEEEEEEcCCchh-------hHHHHHhhhcCCCE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSV---ISPTLGFNIKTVTYQKYTLNIWDVGGQRT-------IRSYWRNYFEQTDG   86 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d~   86 (185)
                      -+|.++|.|.+||||++..|.+-..+.   ...+.......+.+++-.+++.|.||.-+       ...+.....+.|..
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl  139 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL  139 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence            489999999999999999998865532   22344344455668888999999999432       23344555678999


Q ss_pred             EEEEEeCCCcccHHHH-----------------------------------------HHHHH------------------
Q 029920           87 LVWVVDSSDLRRLDDC-----------------------------------------KMELD------------------  107 (185)
Q Consensus        87 ~i~v~d~~~~~s~~~~-----------------------------------------~~~~~------------------  107 (185)
                      +++|.|+..|-+...+                                         ...+.                  
T Consensus       140 i~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~D  219 (358)
T KOG1487|consen  140 IFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATAD  219 (358)
T ss_pred             EEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcchh
Confidence            9999998876422111                                         11111                  


Q ss_pred             ---HHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          108 ---NLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       108 ---~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                         ..+..+ ...+|.+.++||+|...-++.   ...+        .....+++||.+++|++++++.+.+.+.
T Consensus       220 dLIdvVegn-r~yVp~iyvLNkIdsISiEEL---dii~--------~iphavpISA~~~wn~d~lL~~mweyL~  281 (358)
T KOG1487|consen  220 DLIDVVEGN-RIYVPCIYVLNKIDSISIEEL---DIIY--------TIPHAVPISAHTGWNFDKLLEKMWEYLK  281 (358)
T ss_pred             hhhhhhccC-ceeeeeeeeecccceeeeecc---ceee--------eccceeecccccccchHHHHHHHhhcch
Confidence               111110 013689999999997554222   2111        3445799999999999999999887653

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.28  E-value=2.6e-11  Score=85.85  Aligned_cols=165  Identities=19%  Similarity=0.292  Sum_probs=108.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCc----ccccCcceEEEEEEEcCeEEEEEEcCCchhhHH---HHHhhhcCCCEEE
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTS----VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRS---YWRNYFEQTDGLV   88 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~d~~i   88 (185)
                      ..+|+++|...||||++-+-...+..+    ...+|...+...+...-..+++||.||+-.+..   -.+..++++.+++
T Consensus        27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi  106 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI  106 (347)
T ss_pred             CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence            367999999999999998776665444    334555555555555557899999999765432   2455688999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhc--cccCCCeEEEEeecCCCCCC-CCH---HHHHH----hcCcccccCccceEEEee
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKE--ERLSGASLLILANKQDINGA-LTP---TEIAK----VLNLEAMDKTRHWKIVGC  158 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~~ivv~nK~D~~~~-~~~---~~~~~----~~~~~~~~~~~~~~~~~~  158 (185)
                      +|+|+.+.  +.+....+.....+  ...+++.+-|.+.|.|.... ...   +.+-+    .+....+.. ....|.-+
T Consensus       107 fvIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~-v~vsf~LT  183 (347)
T KOG3887|consen  107 FVIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEK-VQVSFYLT  183 (347)
T ss_pred             EEEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhcc-ceEEEEEe
Confidence            99999873  34444444444332  34568899999999996543 221   12222    222222222 45567777


Q ss_pred             cccCCCCHHHHHHHHHHHHhhhcccC
Q 029920          159 SAYTGEGLLEGFDWLVQDIASRIYLL  184 (185)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~~~~~~~~  184 (185)
                      |-.+. .|-|.|..+++.+.++.+.+
T Consensus       184 SIyDH-SIfEAFSkvVQkLipqLptL  208 (347)
T KOG3887|consen  184 SIYDH-SIFEAFSKVVQKLIPQLPTL  208 (347)
T ss_pred             eecch-HHHHHHHHHHHHHhhhchhH
Confidence            77665 58888998888887776654

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.28  E-value=1.4e-12  Score=96.01  Aligned_cols=56  Identities=27%  Similarity=0.315  Sum_probs=39.8

Q ss_pred             CCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHH
Q 029920          117 GASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQD  176 (185)
Q Consensus       117 ~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  176 (185)
                      ...-++|+||+|+.+..  ..+.....+...    ....+++++||++|.|++++.+||.+.
T Consensus       230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~l----np~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNFDVEKCIACAREV----NPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCcccHHHHHHHHHHHHhh----CCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            35679999999997532  233333332211    146789999999999999999999774

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.27  E-value=1.6e-10  Score=92.91  Aligned_cols=115  Identities=15%  Similarity=0.141  Sum_probs=73.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCcccc----cCcceEEEEEEEcCeEEEEEEcCCchhhH----------HHHHhhh
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTSVIS----PTLGFNIKTVTYQKYTLNIWDVGGQRTIR----------SYWRNYF   81 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~~~~~   81 (185)
                      .++|+++|.+|+||||++|+|++.......    .|..........++..+.++||||.....          .....++
T Consensus       118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~L  197 (763)
T TIGR00993       118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFI  197 (763)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHH
Confidence            468999999999999999999998653222    22222222334577899999999955321          1122233


Q ss_pred             c--CCCEEEEEEeCCCcccH-H--HHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           82 E--QTDGLVWVVDSSDLRRL-D--DCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        82 ~--~~d~~i~v~d~~~~~s~-~--~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      .  .+|++|+|..+...... +  .+...++.++....  -..+|||+|..|...+
T Consensus       198 sk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~I--wk~tIVVFThgD~lpp  251 (763)
T TIGR00993       198 KKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSI--WFNAIVTLTHAASAPP  251 (763)
T ss_pred             hcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHh--HcCEEEEEeCCccCCC
Confidence            3  57999999987643221 1  23344444444321  1468999999997653

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.26  E-value=2.6e-11  Score=87.27  Aligned_cols=153  Identities=18%  Similarity=0.203  Sum_probs=86.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhC------CCCc-----------------------ccccCcceEEEEEEE------
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKING------EDTS-----------------------VISPTLGFNIKTVTY------   57 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~------~~~~-----------------------~~~~t~~~~~~~~~~------   57 (185)
                      ..+.+.|.+-|+||+|||||++.|..      .+..                       ......+...+.+-.      
T Consensus        26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGG  105 (266)
T PF03308_consen   26 TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGG  105 (266)
T ss_dssp             TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHH
T ss_pred             cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCC
Confidence            44678999999999999999999832      1110                       011122344444321      


Q ss_pred             --------------cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEE
Q 029920           58 --------------QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLIL  123 (185)
Q Consensus        58 --------------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv  123 (185)
                                    .++.+.++.|.|.-.-.   .....-+|.+++|.-....+..+..+.-+.+         +.=++|
T Consensus       106 ls~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE---------iaDi~v  173 (266)
T PF03308_consen  106 LSRATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIME---------IADIFV  173 (266)
T ss_dssp             HHHHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHH---------H-SEEE
T ss_pred             ccHhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhh---------hccEEE
Confidence                          35788999998743222   2234678999999887665555544333333         345789


Q ss_pred             eecCCCCCCCC-HHHHHHhcCcccc-cCccceEEEeecccCCCCHHHHHHHHHHHH
Q 029920          124 ANKQDINGALT-PTEIAKVLNLEAM-DKTRHWKIVGCSAYTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       124 ~nK~D~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (185)
                      +||+|...... ..++...+....- ...-..|++.+||.++.|++++++.|.+..
T Consensus       174 VNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~  229 (266)
T PF03308_consen  174 VNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR  229 (266)
T ss_dssp             EE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             EeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            99999543211 1222222221111 111235899999999999999999988754

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.26  E-value=9e-11  Score=87.06  Aligned_cols=120  Identities=18%  Similarity=0.243  Sum_probs=66.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCcccc-----------cCcceEEEE--EEEcC--eEEEEEEcCCchh-------h
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTSVIS-----------PTLGFNIKT--VTYQK--YTLNIWDVGGQRT-------I   73 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~~~~-----------~t~~~~~~~--~~~~~--~~~~~~D~~g~~~-------~   73 (185)
                      .++|+|+|.+|+|||||+|.|++.......           .+..+....  +..++  ..+.++||||...       +
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            689999999999999999999987653221           122222222  22233  5789999999221       0


Q ss_pred             HH-------HHHhhh-------------cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC
Q 029920           74 RS-------YWRNYF-------------EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL  133 (185)
Q Consensus        74 ~~-------~~~~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~  133 (185)
                      ..       ....++             ...|+++|.++.+.. .+....-....-+.    ...++|-|+.|+|.....
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~Ls----~~vNvIPvIaKaD~lt~~  158 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRLS----KRVNVIPVIAKADTLTPE  158 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHHT----TTSEEEEEESTGGGS-HH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHhc----ccccEEeEEecccccCHH
Confidence            00       011111             245999999998753 22222111122222    248899999999986654


Q ss_pred             CHHHHHH
Q 029920          134 TPTEIAK  140 (185)
Q Consensus       134 ~~~~~~~  140 (185)
                      +....+.
T Consensus       159 el~~~k~  165 (281)
T PF00735_consen  159 ELQAFKQ  165 (281)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444443

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.23  E-value=9.1e-11  Score=80.83  Aligned_cols=64  Identities=20%  Similarity=0.335  Sum_probs=42.7

Q ss_pred             eEEEEEEcCCchh----hHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecC
Q 029920           60 YTLNIWDVGGQRT----IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ  127 (185)
Q Consensus        60 ~~~~~~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~  127 (185)
                      ..+.++||||...    .......+++.+|++++|.+++...+-..... +......   ....+++|.||+
T Consensus       101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~-l~~~~~~---~~~~~i~V~nk~  168 (168)
T PF00350_consen  101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEF-LKQMLDP---DKSRTIFVLNKA  168 (168)
T ss_dssp             CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHH-HHHHHTT---TCSSEEEEEE-G
T ss_pred             cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHH-HHHHhcC---CCCeEEEEEcCC
Confidence            3588999999533    23567888899999999999998544343322 2333232   245599999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=6.3e-11  Score=94.35  Aligned_cols=112  Identities=23%  Similarity=0.317  Sum_probs=81.4

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCccccc----------------CcceEEEE----E-----EEcCeEEEEEEc
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISP----------------TLGFNIKT----V-----TYQKYTLNIWDV   67 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~----------------t~~~~~~~----~-----~~~~~~~~~~D~   67 (185)
                      .....+|+++|+-+.|||+|+..|.....+...+                ..+...+.    +     +...+-++++||
T Consensus       125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT  204 (971)
T KOG0468|consen  125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT  204 (971)
T ss_pred             cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence            4556789999999999999999997654432211                11111111    1     113367899999


Q ss_pred             CCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCC
Q 029920           68 GGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI  129 (185)
Q Consensus        68 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~  129 (185)
                      ||+-.|.......++.+|++++|+|+.+.-++..     ..++++....+.|+.+|+||.|.
T Consensus       205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-----Er~ikhaiq~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-----ERIIKHAIQNRLPIVVVINKVDR  261 (971)
T ss_pred             CCcccchHHHHHHhhhcceEEEEEEcccCceeeH-----HHHHHHHHhccCcEEEEEehhHH
Confidence            9999999999999999999999999998766654     33333333447999999999995

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.21  E-value=3.3e-11  Score=78.69  Aligned_cols=113  Identities=18%  Similarity=0.162  Sum_probs=75.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCccc-c-cCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVI-S-PTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSS   94 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~-~-~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   94 (185)
                      +|++++|+.|+|||+|+.++....+... . ++.+                       +......+.+.++.+++|++..
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~   57 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD   57 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence            4899999999999999999977766421 1 2222                       2222233456789999999999


Q ss_pred             CcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           95 DLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        95 ~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      +..+++..  |...+... ...+.|.++++||.|+.....   ....         ...+++++|++++.|+.
T Consensus        58 ~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~~---~~~~---------~~~~~~~~s~~~~~~~~  115 (124)
T smart00010       58 DRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEERQ---VATE---------EGLEFAETSAKTPEEGE  115 (124)
T ss_pred             CHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhCc---CCHH---------HHHHHHHHhCCCcchhh
Confidence            98888654  44444333 334688999999999733211   1110         12235788999999874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.20  E-value=5e-10  Score=88.08  Aligned_cols=153  Identities=20%  Similarity=0.193  Sum_probs=99.6

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHhCCCCcc-c--ccCcceEEEEEEE--cCeEEEEEEcCCchhhHHHHHhhhcCCC
Q 029920           11 KKKEKEMRILMVGLDNSGKTTIVLKINGEDTSV-I--SPTLGFNIKTVTY--QKYTLNIWDVGGQRTIRSYWRNYFEQTD   85 (185)
Q Consensus        11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~-~--~~t~~~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d   85 (185)
                      +..++-+++.|+|++++|||.+++++.|+.+.. .  +....+....+..  ....+.+.|.+-. ........- ..||
T Consensus       420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cD  497 (625)
T KOG1707|consen  420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACD  497 (625)
T ss_pred             cccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceee
Confidence            335567899999999999999999999977753 1  1112223333322  3355666666543 222222222 6799


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC-----CHHHHHHhcCcccccCccceEEEeecc
Q 029920           86 GLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL-----TPTEIAKVLNLEAMDKTRHWKIVGCSA  160 (185)
Q Consensus        86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (185)
                      ++.++||.+++.+|.............   ...|+++|++|+|+.+..     .+.+....++        -.+.+.+|.
T Consensus       498 v~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~--------i~~P~~~S~  566 (625)
T KOG1707|consen  498 VACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLG--------LPPPIHISS  566 (625)
T ss_pred             eEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcC--------CCCCeeecc
Confidence            999999999999999887765555443   479999999999986543     2233333222        123567777


Q ss_pred             cCCCCHHHHHHHHHHHH
Q 029920          161 YTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       161 ~~~~~i~~l~~~l~~~~  177 (185)
                      +.... .++|..|+...
T Consensus       567 ~~~~s-~~lf~kL~~~A  582 (625)
T KOG1707|consen  567 KTLSS-NELFIKLATMA  582 (625)
T ss_pred             CCCCC-chHHHHHHHhh
Confidence            75333 78888887764

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=99.20  E-value=2.3e-11  Score=85.69  Aligned_cols=135  Identities=21%  Similarity=0.279  Sum_probs=94.1

Q ss_pred             cCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCC----------CcccHHHHHHHHHHHHhcccc
Q 029920           46 PTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSS----------DLRRLDDCKMELDNLLKEERL  115 (185)
Q Consensus        46 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~  115 (185)
                      ||.|+....++..+..|++.|.+|+..-+..|.+++++.-.+++.+.++          +...+++....+..++.++..
T Consensus       185 PTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF  264 (359)
T KOG0085|consen  185 PTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF  264 (359)
T ss_pred             CcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccc
Confidence            5556655566677789999999999998899999998876666655433          334667778889999999988


Q ss_pred             CCCeEEEEeecCCCCCCCCH-HHH---------------------HHhcCcccccCccceEEEeecccCCCCHHHHHHHH
Q 029920          116 SGASLLILANKQDINGALTP-TEI---------------------AKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL  173 (185)
Q Consensus       116 ~~~~~ivv~nK~D~~~~~~~-~~~---------------------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (185)
                      .+.++|+.+||-|+.+..-. ..+                     ...+............-..++|.+-.||.-+|..+
T Consensus       265 ~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaV  344 (359)
T KOG0085|consen  265 QNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAV  344 (359)
T ss_pred             cCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHH
Confidence            99999999999998653111 111                     11111111111122334567899999999999999


Q ss_pred             HHHHhhh
Q 029920          174 VQDIASR  180 (185)
Q Consensus       174 ~~~~~~~  180 (185)
                      .+.+.+.
T Consensus       345 kDtiLq~  351 (359)
T KOG0085|consen  345 KDTILQL  351 (359)
T ss_pred             HHHHHHh
Confidence            8887653

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.19  E-value=3.6e-11  Score=82.68  Aligned_cols=79  Identities=20%  Similarity=0.174  Sum_probs=50.9

Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHh-ccccCCCeEEEEeecCCCCCCCCH--HHHHHhcCcccccCccceEEEeeccc
Q 029920           85 DGLVWVVDSSDLRRLDDCKMELDNLLK-EERLSGASLLILANKQDINGALTP--TEIAKVLNLEAMDKTRHWKIVGCSAY  161 (185)
Q Consensus        85 d~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (185)
                      +.-|+|+|++..+.-..         + .+... ..=++|+||.|+.+....  +.........    ..+.|++.+|++
T Consensus       119 ~~~v~VidvteGe~~P~---------K~gP~i~-~aDllVInK~DLa~~v~~dlevm~~da~~~----np~~~ii~~n~k  184 (202)
T COG0378         119 HLRVVVIDVTEGEDIPR---------KGGPGIF-KADLLVINKTDLAPYVGADLEVMARDAKEV----NPEAPIIFTNLK  184 (202)
T ss_pred             ceEEEEEECCCCCCCcc---------cCCCcee-EeeEEEEehHHhHHHhCccHHHHHHHHHHh----CCCCCEEEEeCC
Confidence            37788888876432110         1 11111 145799999999876444  3333322221    167789999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 029920          162 TGEGLLEGFDWLVQDI  177 (185)
Q Consensus       162 ~~~~i~~l~~~l~~~~  177 (185)
                      +|+|++++++|+....
T Consensus       185 tg~G~~~~~~~i~~~~  200 (202)
T COG0378         185 TGEGLDEWLRFIEPQA  200 (202)
T ss_pred             CCcCHHHHHHHHHhhc
Confidence            9999999999987654

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.19  E-value=3.8e-10  Score=88.84  Aligned_cols=163  Identities=16%  Similarity=0.252  Sum_probs=102.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEc------CeEEEEEEcCCchhhHHHHHhhhcCC----
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQ------KYTLNIWDVGGQRTIRSYWRNYFEQT----   84 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~------~~~~~~~D~~g~~~~~~~~~~~~~~~----   84 (185)
                      ..-.|+|+|..++|||||+.+|.+....  .++.+..+..++..      ...+.+|-..|...+..+....+...    
T Consensus        24 ~~k~vlvlG~~~~GKttli~~L~~~e~~--~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~  101 (472)
T PF05783_consen   24 SEKSVLVLGDKGSGKTTLIARLQGIEDP--KKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN  101 (472)
T ss_pred             CCceEEEEeCCCCchHHHHHHhhccCCC--CCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence            4468999999999999999999876433  34444444444331      14688999988777777766655432    


Q ss_pred             CEEEEEEeCCCcccHHHHH-----------------------------HHHHHHHhcc--c-------------------
Q 029920           85 DGLVWVVDSSDLRRLDDCK-----------------------------MELDNLLKEE--R-------------------  114 (185)
Q Consensus        85 d~~i~v~d~~~~~s~~~~~-----------------------------~~~~~~~~~~--~-------------------  114 (185)
                      -++++|+|.+.|..+-+..                             ..|+.+.+..  .                   
T Consensus       102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~  181 (472)
T PF05783_consen  102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES  181 (472)
T ss_pred             eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence            5778899999986332111                             1111111000  0                   


Q ss_pred             ------------cCCCeEEEEeecCCCCCCCCH-----HHHHHhcC--cccccCccceEEEeecccCCCCHHHHHHHHHH
Q 029920          115 ------------LSGASLLILANKQDINGALTP-----TEIAKVLN--LEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ  175 (185)
Q Consensus       115 ------------~~~~~~ivv~nK~D~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (185)
                                  .-++|++||.+|+|.....+.     ++..+...  .-.++-.++...|.+|++...|++.++..|.+
T Consensus       182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h  261 (472)
T PF05783_consen  182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILH  261 (472)
T ss_pred             ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHH
Confidence                        004799999999996432111     11111111  11223337788999999999999999999888


Q ss_pred             HHhh
Q 029920          176 DIAS  179 (185)
Q Consensus       176 ~~~~  179 (185)
                      .+..
T Consensus       262 ~l~~  265 (472)
T PF05783_consen  262 RLYG  265 (472)
T ss_pred             Hhcc
Confidence            7754

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=5.2e-10  Score=84.28  Aligned_cols=80  Identities=20%  Similarity=0.298  Sum_probs=57.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEE------------------EcCeEEEEEEcCC-----
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVT------------------YQKYTLNIWDVGG-----   69 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~------------------~~~~~~~~~D~~g-----   69 (185)
                      .++++++|.||+|||||.|+++.....   ....|+......+.                  .....+.++|.+|     
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            478999999999999999999876542   11223332222221                  1225789999998     


Q ss_pred             --chhhHHHHHhhhcCCCEEEEEEeCCC
Q 029920           70 --QRTIRSYWRNYFEQTDGLVWVVDSSD   95 (185)
Q Consensus        70 --~~~~~~~~~~~~~~~d~~i~v~d~~~   95 (185)
                        .+.........++.+|+++.|+|+..
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f~  109 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCFG  109 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence              44566777778899999999999874

>cd01859 MJ1464 MJ1464

Probab=99.16  E-value=1.1e-10  Score=79.60  Aligned_cols=95  Identities=18%  Similarity=0.126  Sum_probs=63.0

Q ss_pred             hHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccc
Q 029920           73 IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRH  152 (185)
Q Consensus        73 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  152 (185)
                      ++.+.+...+++|++++|+|+.++.....  ..+...+.   ..++|+++|+||+|+.+......... +.    . ..+
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~-~~----~-~~~   70 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVL---ELGKKLLIVLNKADLVPKEVLEKWKS-IK----E-SEG   70 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHH---hCCCcEEEEEEhHHhCCHHHHHHHHH-HH----H-hCC
Confidence            34567777888999999999987543222  11222222   23689999999999854322211111 10    1 134


Q ss_pred             eEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          153 WKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       153 ~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      .+++.+||+++.|++++++.+.+.+.
T Consensus        71 ~~~~~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          71 IPVVYVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             CcEEEEEccccccHHHHHHHHHHHHh
Confidence            57899999999999999999988764

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=1.5e-09  Score=79.22  Aligned_cols=162  Identities=17%  Similarity=0.125  Sum_probs=99.8

Q ss_pred             hhccCceeEEEEEcCCCCChHHHHHHHhCC---C----Cc--------cc----ccCcceEEEEEEEcCeEEEEEEcCCc
Q 029920           10 IKKKEKEMRILMVGLDNSGKTTIVLKINGE---D----TS--------VI----SPTLGFNIKTVTYQKYTLNIWDVGGQ   70 (185)
Q Consensus        10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~---~----~~--------~~----~~t~~~~~~~~~~~~~~~~~~D~~g~   70 (185)
                      ..+.+...+|..+|+-+-|||||-.+++..   .    ..        ..    .-|+......++..+..+.-+|+||+
T Consensus         6 f~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGH   85 (394)
T COG0050           6 FERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGH   85 (394)
T ss_pred             hcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCCh
Confidence            344667899999999999999998776421   0    00        01    11222223334556788999999999


Q ss_pred             hhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCC-eEEEEeecCCCCCCCCHH-----HHHHhcCc
Q 029920           71 RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGA-SLLILANKQDINGALTPT-----EIAKVLNL  144 (185)
Q Consensus        71 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~~ivv~nK~D~~~~~~~~-----~~~~~~~~  144 (185)
                      ..+-....-...+.|+.|+|+.++|...-+ .++.+.-   . ...+. .+++++||+|+.++.+.-     ++.+.+..
T Consensus        86 aDYvKNMItgAaqmDgAILVVsA~dGpmPq-TrEHiLl---a-rqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~  160 (394)
T COG0050          86 ADYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILL---A-RQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSE  160 (394)
T ss_pred             HHHHHHHhhhHHhcCccEEEEEcCCCCCCc-chhhhhh---h-hhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHH
Confidence            998877777778899999999999843222 2221111   1 11245 567788999998754433     23333433


Q ss_pred             ccccCccceEEEeecccCCC--------CHHHHHHHHHHHH
Q 029920          145 EAMDKTRHWKIVGCSAYTGE--------GLLEGFDWLVQDI  177 (185)
Q Consensus       145 ~~~~~~~~~~~~~~Sa~~~~--------~i~~l~~~l~~~~  177 (185)
                      ..+.. .+.|++.-||..--        .|.+|.+.+-+++
T Consensus       161 y~f~g-d~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yi  200 (394)
T COG0050         161 YGFPG-DDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYI  200 (394)
T ss_pred             cCCCC-CCcceeechhhhhhcCCcchHHHHHHHHHHHHhcC
Confidence            33333 46778887776532        2455555554444

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=99.12  E-value=7.4e-10  Score=79.48  Aligned_cols=133  Identities=22%  Similarity=0.277  Sum_probs=93.8

Q ss_pred             CcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc----------cHHHHHHHHHHHHhccccC
Q 029920           47 TLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR----------RLDDCKMELDNLLKEERLS  116 (185)
Q Consensus        47 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~  116 (185)
                      |.|+....+.++.+.|.++|.+|+...+..|..++....++|+|+.+++-.          .+++....+..++......
T Consensus       189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~  268 (379)
T KOG0099|consen  189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR  268 (379)
T ss_pred             ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence            555666677888899999999999999999999999999999999887522          4555666777777766677


Q ss_pred             CCeEEEEeecCCCCCCCC------------------------------HHHHHHhc---------CcccccCccceEEEe
Q 029920          117 GASLLILANKQDINGALT------------------------------PTEIAKVL---------NLEAMDKTRHWKIVG  157 (185)
Q Consensus       117 ~~~~ivv~nK~D~~~~~~------------------------------~~~~~~~~---------~~~~~~~~~~~~~~~  157 (185)
                      .+.+|+.+||.|+.....                              .......+         ........+.+.+..
T Consensus       269 tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHF  348 (379)
T KOG0099|consen  269 TISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF  348 (379)
T ss_pred             hhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccce
Confidence            899999999999743100                              00000000         000111123445566


Q ss_pred             ecccCCCCHHHHHHHHHHHHhh
Q 029920          158 CSAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       158 ~Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                      ++|.+-.||..+|+...+.++.
T Consensus       349 TcAvDTenIrrVFnDcrdiIqr  370 (379)
T KOG0099|consen  349 TCAVDTENIRRVFNDCRDIIQR  370 (379)
T ss_pred             eEeechHHHHHHHHHHHHHHHH
Confidence            7888889999999998887754

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.10  E-value=3.2e-09  Score=79.68  Aligned_cols=128  Identities=20%  Similarity=0.298  Sum_probs=77.5

Q ss_pred             hhccCceeEEEEEcCCCCChHHHHHHHhCCCCcc-----------cccCcceEEEEE--EEcC--eEEEEEEcCCchhh-
Q 029920           10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSV-----------ISPTLGFNIKTV--TYQK--YTLNIWDVGGQRTI-   73 (185)
Q Consensus        10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~-----------~~~t~~~~~~~~--~~~~--~~~~~~D~~g~~~~-   73 (185)
                      .-+..-.++|+++|+.|+||||++|+|++.....           ..++..+.....  .-++  ..++++||||..++ 
T Consensus        17 ~~k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~i   96 (373)
T COG5019          17 LSKKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFI   96 (373)
T ss_pred             HHhcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccc
Confidence            3345668999999999999999999998874321           223333333332  2233  67899999992221 


Q ss_pred             -------------HHHHHhhh--------------cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeec
Q 029920           74 -------------RSYWRNYF--------------EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANK  126 (185)
Q Consensus        74 -------------~~~~~~~~--------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK  126 (185)
                                   ..+...|+              ...|+++|.+..+. ..+....-.+..-+..    .+.+|-|+.|
T Consensus        97 dNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls~----~vNlIPVI~K  171 (373)
T COG5019          97 DNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLSK----RVNLIPVIAK  171 (373)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHhc----ccCeeeeeec
Confidence                         11122222              24589999998664 2233322222222222    4789999999


Q ss_pred             CCCCCCCCHHHHHHhc
Q 029920          127 QDINGALTPTEIAKVL  142 (185)
Q Consensus       127 ~D~~~~~~~~~~~~~~  142 (185)
                      +|.....+....+...
T Consensus       172 aD~lT~~El~~~K~~I  187 (373)
T COG5019         172 ADTLTDDELAEFKERI  187 (373)
T ss_pred             cccCCHHHHHHHHHHH
Confidence            9987765655554444

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.10  E-value=4.1e-10  Score=82.32  Aligned_cols=108  Identities=22%  Similarity=0.218  Sum_probs=65.9

Q ss_pred             CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC-CHHH
Q 029920           59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL-TPTE  137 (185)
Q Consensus        59 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-~~~~  137 (185)
                      ++.+.++.|.|.-.-..   ....-+|.+++|.=.--.+..+..+.-+.+         +-=|+|+||.|....+ -..+
T Consensus       143 G~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimE---------iaDi~vINKaD~~~A~~a~r~  210 (323)
T COG1703         143 GYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIME---------IADIIVINKADRKGAEKAARE  210 (323)
T ss_pred             CCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhh---------hhheeeEeccChhhHHHHHHH
Confidence            47888888887533222   223467888887655444555554443333         3457899999964431 1223


Q ss_pred             HHHhcCccc--ccC-ccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          138 IAKVLNLEA--MDK-TRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       138 ~~~~~~~~~--~~~-~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      ....+....  ... .=..|++.+||..|.|++++|+.+.+...
T Consensus       211 l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~  254 (323)
T COG1703         211 LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK  254 (323)
T ss_pred             HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence            333333221  111 11347999999999999999999988653

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=5.9e-09  Score=78.71  Aligned_cols=129  Identities=19%  Similarity=0.248  Sum_probs=77.9

Q ss_pred             HhhccCceeEEEEEcCCCCChHHHHHHHhCCCCccc----------ccCcceEEEEEEE--cC--eEEEEEEcCCchh--
Q 029920            9 KIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVI----------SPTLGFNIKTVTY--QK--YTLNIWDVGGQRT--   72 (185)
Q Consensus         9 ~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~----------~~t~~~~~~~~~~--~~--~~~~~~D~~g~~~--   72 (185)
                      ...++.-.++++++|+.|.|||||+|+|+.......          ..+..+......+  ++  ..++++||||...  
T Consensus        14 ~~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~v   93 (366)
T KOG2655|consen   14 KSVKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAV   93 (366)
T ss_pred             HHHhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccc
Confidence            334455679999999999999999999987744211          1122333333322  33  5788999999221  


Q ss_pred             ------------hHHHHHhhh-------------cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecC
Q 029920           73 ------------IRSYWRNYF-------------EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ  127 (185)
Q Consensus        73 ------------~~~~~~~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~  127 (185)
                                  .......|+             ...|+++|.+..+. ..+....-.+..-+..    .+++|-|+-|+
T Consensus        94 dns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g-hgL~p~Di~~Mk~l~~----~vNiIPVI~Ka  168 (366)
T KOG2655|consen   94 DNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG-HGLKPLDIEFMKKLSK----KVNLIPVIAKA  168 (366)
T ss_pred             cccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC-CCCcHhhHHHHHHHhc----cccccceeecc
Confidence                        112223333             15689999998664 2233333222333232    58899999999


Q ss_pred             CCCCCCCHHHHHHhc
Q 029920          128 DINGALTPTEIAKVL  142 (185)
Q Consensus       128 D~~~~~~~~~~~~~~  142 (185)
                      |...+.+....+...
T Consensus       169 D~lT~~El~~~K~~I  183 (366)
T KOG2655|consen  169 DTLTKDELNQFKKRI  183 (366)
T ss_pred             ccCCHHHHHHHHHHH
Confidence            987765555544433

>cd01855 YqeH YqeH

Probab=99.06  E-value=6.7e-10  Score=78.14  Aligned_cols=100  Identities=18%  Similarity=0.093  Sum_probs=65.0

Q ss_pred             chhhHHHHHhhhcCCCEEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHH-HHHHhc---Cc
Q 029920           70 QRTIRSYWRNYFEQTDGLVWVVDSSDLR-RLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPT-EIAKVL---NL  144 (185)
Q Consensus        70 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~~~~---~~  144 (185)
                      ...+..++..+++.+|++++|+|+.++. ++..      .+..  ...++|+++|+||+|+....... ......   ..
T Consensus        21 ~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~------~l~~--~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~   92 (190)
T cd01855          21 EDFILNLLSSISPKKALVVHVVDIFDFPGSLIP------RLRL--FGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAA   92 (190)
T ss_pred             HHHHHHHHHhcccCCcEEEEEEECccCCCccch------hHHH--hcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHH
Confidence            3335778888999999999999998753 2211      1111  12368999999999986443322 222111   00


Q ss_pred             ccccCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          145 EAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       145 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      ... .....+++.+||+++.|++++++.|.+.+.
T Consensus        93 ~~~-~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          93 AGL-GLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             hhc-CCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            000 001235899999999999999999988764

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.05  E-value=5.9e-10  Score=77.03  Aligned_cols=57  Identities=16%  Similarity=0.306  Sum_probs=43.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEc-CeEEEEEEcCCc
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQ-KYTLNIWDVGGQ   70 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~   70 (185)
                      ...++++++|.||+|||||+|+|.+......++..+.+...-.+. +..+.++||||.
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~~~~~l~DtPGi  172 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLDKKVKLLDSPGI  172 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeCCCEEEEECcCC
Confidence            345899999999999999999999988766677666655432221 246899999993

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01858 NGP_1 NGP-1

Probab=99.05  E-value=6.9e-10  Score=75.72  Aligned_cols=57  Identities=18%  Similarity=0.286  Sum_probs=44.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEc-CeEEEEEEcCCc
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQ-KYTLNIWDVGGQ   70 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~   70 (185)
                      ....+|+++|.||+|||||+|+|.+......+++.+.+.....+. +..+.++||||.
T Consensus       100 ~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPGi  157 (157)
T cd01858         100 KKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPGV  157 (157)
T ss_pred             ccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcCC
Confidence            356889999999999999999999987767777776655543332 245889999993

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=99.01  E-value=6.6e-09  Score=78.43  Aligned_cols=164  Identities=14%  Similarity=0.051  Sum_probs=100.6

Q ss_pred             hhccCceeEEEEEcCCCCChHHHHHHHhCCCCccc-----------------ccCcceEEEEEEE---------------
Q 029920           10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVI-----------------SPTLGFNIKTVTY---------------   57 (185)
Q Consensus        10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~-----------------~~t~~~~~~~~~~---------------   57 (185)
                      .......+.|++.|+.+.|||||+-.|.......-                 .-+.......+-+               
T Consensus       111 ~~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~a  190 (527)
T COG5258         111 TEEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEA  190 (527)
T ss_pred             ccCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHH
Confidence            34467789999999999999999988755433110                 1122222222211               


Q ss_pred             --------cCeEEEEEEcCCchhhHHHHHhh--hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecC
Q 029920           58 --------QKYTLNIWDVGGQRTIRSYWRNY--FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ  127 (185)
Q Consensus        58 --------~~~~~~~~D~~g~~~~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~  127 (185)
                              .+.-+.++||.|++.+......-  -.+.|..++++.+++.-+  .+...-..+.-.   .+.|++++.+|+
T Consensus       191 E~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tkEHLgi~~a---~~lPviVvvTK~  265 (527)
T COG5258         191 EKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTKEHLGIALA---MELPVIVVVTKI  265 (527)
T ss_pred             HHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhhHhhhhhhh---hcCCEEEEEEec
Confidence                    23568899999999876554333  367899999999987422  222211222222   379999999999


Q ss_pred             CCCCCCCHHH----HHHhcCc-------------------ccccCccceEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920          128 DINGALTPTE----IAKVLNL-------------------EAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       128 D~~~~~~~~~----~~~~~~~-------------------~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                      |+.++.....    ++..+..                   ..-....-.|+|.+|+-+|.|++-|.+. ...+..
T Consensus       266 D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~-f~~Lp~  339 (527)
T COG5258         266 DMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEF-FLLLPK  339 (527)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHH-HHhCCc
Confidence            9977643322    2222210                   0011123579999999999999765554 444433

>PRK12289 GTPase RsgA; Reviewed

Probab=99.00  E-value=1.3e-09  Score=83.21  Aligned_cols=90  Identities=17%  Similarity=0.098  Sum_probs=62.7

Q ss_pred             HHhhhcCCCEEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEE
Q 029920           77 WRNYFEQTDGLVWVVDSSDLR-RLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKI  155 (185)
Q Consensus        77 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (185)
                      ....+.++|.+++|+|+.++. +...+..++...    ...++|+++|+||+|+.+......+...+..      .+.++
T Consensus        83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a----~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~------~g~~v  152 (352)
T PRK12289         83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKA----ESTGLEIVLCLNKADLVSPTEQQQWQDRLQQ------WGYQP  152 (352)
T ss_pred             echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHH----HHCCCCEEEEEEchhcCChHHHHHHHHHHHh------cCCeE
Confidence            344578999999999999865 343445555443    2247999999999999754222233322211      34578


Q ss_pred             EeecccCCCCHHHHHHHHHHH
Q 029920          156 VGCSAYTGEGLLEGFDWLVQD  176 (185)
Q Consensus       156 ~~~Sa~~~~~i~~l~~~l~~~  176 (185)
                      +.+||+++.|++++++.+...
T Consensus       153 ~~iSA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        153 LFISVETGIGLEALLEQLRNK  173 (352)
T ss_pred             EEEEcCCCCCHHHHhhhhccc
Confidence            999999999999999887653

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.94  E-value=1.7e-09  Score=78.28  Aligned_cols=159  Identities=15%  Similarity=0.045  Sum_probs=97.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-cccc-CcceEEEEEE-EcCeEEEEEEcCC----------chhhHHHHHh
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISP-TLGFNIKTVT-YQKYTLNIWDVGG----------QRTIRSYWRN   79 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~-t~~~~~~~~~-~~~~~~~~~D~~g----------~~~~~~~~~~   79 (185)
                      +..+++++++|..|+|||+|+|.+...+.. ..+. +.+.++..-- .-+..+.++|.||          ..++....+.
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~  212 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKS  212 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHH
Confidence            466799999999999999999999887764 2332 4444333211 1245899999999          3345556666


Q ss_pred             hhcC---CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH------HHHHHhc-CcccccC
Q 029920           80 YFEQ---TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP------TEIAKVL-NLEAMDK  149 (185)
Q Consensus        80 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~------~~~~~~~-~~~~~~~  149 (185)
                      |+.+   ---+++.+|++-+  ++.......+++.+   .+.|+.+|+||||.......      ..+...+ +.....+
T Consensus       213 Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f  287 (320)
T KOG2486|consen  213 YLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVF  287 (320)
T ss_pred             HHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhccccce
Confidence            6643   3455667777653  22222222333333   38999999999997543221      1111111 1111112


Q ss_pred             ccceEEEeecccCCCCHHHHHHHHHHH
Q 029920          150 TRHWKIVGCSAYTGEGLLEGFDWLVQD  176 (185)
Q Consensus       150 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~  176 (185)
                      ....|-+.+|+.++.|++++.-.+.+.
T Consensus       288 ~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~  314 (320)
T KOG2486|consen  288 LVDLPWIYVSSVTSLGRDLLLLHIAQL  314 (320)
T ss_pred             eccCCceeeecccccCceeeeeehhhh
Confidence            234455679999999999988766554

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.93  E-value=2.5e-08  Score=70.95  Aligned_cols=148  Identities=14%  Similarity=0.182  Sum_probs=84.1

Q ss_pred             hhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccc-------c---CcceE--EEEEEEcC--eEEEEEEcCCchh---
Q 029920           10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVIS-------P---TLGFN--IKTVTYQK--YTLNIWDVGGQRT---   72 (185)
Q Consensus        10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~-------~---t~~~~--~~~~~~~~--~~~~~~D~~g~~~---   72 (185)
                      ..+..-.|+|+|+|.+|.|||||+|++...+....+       +   |....  ...++.++  .++.++||||...   
T Consensus        40 ~mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqIn  119 (336)
T KOG1547|consen   40 TMKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQIN  119 (336)
T ss_pred             HHhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccC
Confidence            334566899999999999999999999765553211       1   22211  12233344  4788999999221   


Q ss_pred             -----------------------hHHHHHhhhc--CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecC
Q 029920           73 -----------------------IRSYWRNYFE--QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ  127 (185)
Q Consensus        73 -----------------------~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~  127 (185)
                                             ....++..+.  ..|+++|.+..+. .++..+.-.+..-+..    -..++-|+-|+
T Consensus       120 N~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~----vvNvvPVIaka  194 (336)
T KOG1547|consen  120 NDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE----VVNVVPVIAKA  194 (336)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh----hheeeeeEeec
Confidence                                   1111222222  3588899888774 2333332222222222    36788899999


Q ss_pred             CCCCCCCHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920          128 DINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE  164 (185)
Q Consensus       128 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (185)
                      |...-++..+..+....+...  +++.+++-.+.+-.
T Consensus       195 DtlTleEr~~FkqrI~~el~~--~~i~vYPq~~fded  229 (336)
T KOG1547|consen  195 DTLTLEERSAFKQRIRKELEK--HGIDVYPQDSFDED  229 (336)
T ss_pred             ccccHHHHHHHHHHHHHHHHh--cCcccccccccccc
Confidence            976655555555554432221  55555555444433

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.93  E-value=1.6e-09  Score=84.78  Aligned_cols=162  Identities=20%  Similarity=0.245  Sum_probs=109.2

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCC-cccccCcceEEEEEEE--cCeEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDT-SVISPTLGFNIKTVTY--QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~-~~~~~t~~~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      +.-..+|+.|+|..++|||+|++++....+ ...++.-+-..+.+..  ....+.+.|-+|...     ..|....|++|
T Consensus        26 rsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavI  100 (749)
T KOG0705|consen   26 RSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVV  100 (749)
T ss_pred             cccchhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceE
Confidence            355678999999999999999999766655 4555555543433333  446777888887432     23456789999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      +|+.+.+..+|+....+....-.+.....+|.++++++.-.... ..+.+.+.-..........+.++++++.+|.|++.
T Consensus       101 fvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~-~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~r  179 (749)
T KOG0705|consen  101 FVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAK-RPRVITDDRARQLSAQMKRCSYYETCATYGLNVER  179 (749)
T ss_pred             EEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcc-cccccchHHHHHHHHhcCccceeecchhhhhhHHH
Confidence            99999999999987776666655555556788888886533211 11111111111122222445689999999999999


Q ss_pred             HHHHHHHHHhh
Q 029920          169 GFDWLVQDIAS  179 (185)
Q Consensus       169 l~~~l~~~~~~  179 (185)
                      +|+.+...+..
T Consensus       180 vf~~~~~k~i~  190 (749)
T KOG0705|consen  180 VFQEVAQKIVQ  190 (749)
T ss_pred             HHHHHHHHHHH
Confidence            99998887654

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.93  E-value=4.3e-09  Score=78.63  Aligned_cols=88  Identities=22%  Similarity=0.097  Sum_probs=63.0

Q ss_pred             HhhhcCCCEEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEE
Q 029920           78 RNYFEQTDGLVWVVDSSDLR-RLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIV  156 (185)
Q Consensus        78 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (185)
                      +..+.++|.+++|+|+.++. ++..+..|+..+..    .++|+++|+||+|+.+...........     .. .+.+++
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~-----~~-~g~~v~  142 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEA-----LA-LGYPVL  142 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHH-----Hh-CCCeEE
Confidence            34578999999999999887 77777766655433    368999999999996542111111111     11 456899


Q ss_pred             eecccCCCCHHHHHHHHHH
Q 029920          157 GCSAYTGEGLLEGFDWLVQ  175 (185)
Q Consensus       157 ~~Sa~~~~~i~~l~~~l~~  175 (185)
                      .+||+++.|+++++..+..
T Consensus       143 ~vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         143 AVSAKTGEGLDELREYLKG  161 (287)
T ss_pred             EEECCCCccHHHHHhhhcc
Confidence            9999999999999887754

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.93  E-value=1.7e-08  Score=75.92  Aligned_cols=121  Identities=20%  Similarity=0.232  Sum_probs=81.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCccc----ccCcceEEEEEEE-------------c--------------------
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTSVI----SPTLGFNIKTVTY-------------Q--------------------   58 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~~~----~~t~~~~~~~~~~-------------~--------------------   58 (185)
                      .+=|+++|.-..||||+|+.|..+.++..    .||.......+..             +                    
T Consensus        58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~  137 (532)
T KOG1954|consen   58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM  137 (532)
T ss_pred             CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence            45689999999999999999999888522    2333322222100             0                    


Q ss_pred             -----C---eEEEEEEcCCc-----------hhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe
Q 029920           59 -----K---YTLNIWDVGGQ-----------RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS  119 (185)
Q Consensus        59 -----~---~~~~~~D~~g~-----------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~  119 (185)
                           +   .++.++||||.           -.|....+.+.+.+|.++++||...-+--++...    ++.......-.
T Consensus       138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~----vi~aLkG~Edk  213 (532)
T KOG1954|consen  138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKR----VIDALKGHEDK  213 (532)
T ss_pred             HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHH----HHHHhhCCcce
Confidence                 0   36889999993           2345566777899999999999876433333333    33333334567


Q ss_pred             EEEEeecCCCCCCCCHHHHHH
Q 029920          120 LLILANKQDINGALTPTEIAK  140 (185)
Q Consensus       120 ~ivv~nK~D~~~~~~~~~~~~  140 (185)
                      +-||+||.|..+.++..++.-
T Consensus       214 iRVVLNKADqVdtqqLmRVyG  234 (532)
T KOG1954|consen  214 IRVVLNKADQVDTQQLMRVYG  234 (532)
T ss_pred             eEEEeccccccCHHHHHHHHH
Confidence            889999999988766555443

>cd01858 NGP_1 NGP-1

Probab=98.90  E-value=8.4e-09  Score=70.35  Aligned_cols=90  Identities=19%  Similarity=0.123  Sum_probs=58.7

Q ss_pred             hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeec
Q 029920           80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCS  159 (185)
Q Consensus        80 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (185)
                      .++.+|++++|+|+.++..-.  ...+...+.. ...++|+++|+||+|+.+......+...+...     .....+.+|
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~--~~~i~~~l~~-~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~-----~~~~~~~iS   76 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTR--CKHVEEYLKK-EKPHKHLIFVLNKCDLVPTWVTARWVKILSKE-----YPTIAFHAS   76 (157)
T ss_pred             hhhhCCEEEEEEECCCCcccc--CHHHHHHHHh-ccCCCCEEEEEEchhcCCHHHHHHHHHHHhcC-----CcEEEEEee
Confidence            467899999999999863211  1223333332 12358999999999996543222333333221     222358899


Q ss_pred             ccCCCCHHHHHHHHHHHH
Q 029920          160 AYTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       160 a~~~~~i~~l~~~l~~~~  177 (185)
                      |+++.|++++.+.+.+..
T Consensus        77 a~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          77 INNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             ccccccHHHHHHHHHHHH
Confidence            999999999999997764

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.88  E-value=6.3e-09  Score=69.71  Aligned_cols=52  Identities=27%  Similarity=0.406  Sum_probs=38.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEE--EEEEcCeEEEEEEcCCc
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIK--TVTYQKYTLNIWDVGGQ   70 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~   70 (185)
                      +++++|.+|+|||||+|++.+......+...+.+..  .+..++ .+.++||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence            899999999999999999998877554444443322  233433 6799999996

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=98.88  E-value=2.9e-09  Score=80.60  Aligned_cols=158  Identities=16%  Similarity=0.133  Sum_probs=105.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhC----------------------------------CCCcccccCcceEEEEEEEc
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKING----------------------------------EDTSVISPTLGFNIKTVTYQ   58 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~----------------------------------~~~~~~~~t~~~~~~~~~~~   58 (185)
                      +...+++.++|+-.+||||+...+..                                  ........|.+.....++..
T Consensus        76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte  155 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE  155 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence            46789999999999999999766521                                  11122235666777788888


Q ss_pred             CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCc---ccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH
Q 029920           59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL---RRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP  135 (185)
Q Consensus        59 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~  135 (185)
                      ...|.+.|.||+..+......-..++|.-++|+.+...   ..|+.--+.-...+......-...|+++||.|-+..+..
T Consensus       156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs  235 (501)
T KOG0459|consen  156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS  235 (501)
T ss_pred             ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcc
Confidence            89999999999999988888788899999999988542   223322111111111112224678999999997654333


Q ss_pred             HH----HHH----hcCcccccCccceEEEeecccCCCCHHHHH
Q 029920          136 TE----IAK----VLNLEAMDKTRHWKIVGCSAYTGEGLLEGF  170 (185)
Q Consensus       136 ~~----~~~----~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (185)
                      .+    ..+    .+.........+..++++|..+|.++.+..
T Consensus       236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~  278 (501)
T KOG0459|consen  236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT  278 (501)
T ss_pred             hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence            22    222    222222333467789999999999998754

>PRK00098 GTPase RsgA; Reviewed

Probab=98.87  E-value=6e-09  Score=78.25  Aligned_cols=85  Identities=24%  Similarity=0.203  Sum_probs=58.1

Q ss_pred             hhcCCCEEEEEEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEeecCCCCCCC-CHHHHHHhcCcccccCccceEEEe
Q 029920           80 YFEQTDGLVWVVDSSDLRRLDDC-KMELDNLLKEERLSGASLLILANKQDINGAL-TPTEIAKVLNLEAMDKTRHWKIVG  157 (185)
Q Consensus        80 ~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      .+.++|.+++|+|+.++...... ..++... ..   .++|+++|+||+|+.+.. ...++...+.     . .+.++++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~-~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~~-----~-~g~~v~~  146 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLA-EA---NGIKPIIVLNKIDLLDDLEEARELLALYR-----A-IGYDVLE  146 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEhHHcCCCHHHHHHHHHHHH-----H-CCCeEEE
Confidence            35899999999999887655544 3444333 22   378999999999996321 1111222111     1 3468999


Q ss_pred             ecccCCCCHHHHHHHHH
Q 029920          158 CSAYTGEGLLEGFDWLV  174 (185)
Q Consensus       158 ~Sa~~~~~i~~l~~~l~  174 (185)
                      +||+++.|++++++.+.
T Consensus       147 vSA~~g~gi~~L~~~l~  163 (298)
T PRK00098        147 LSAKEGEGLDELKPLLA  163 (298)
T ss_pred             EeCCCCccHHHHHhhcc
Confidence            99999999999998764

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.87  E-value=8e-09  Score=77.23  Aligned_cols=58  Identities=19%  Similarity=0.362  Sum_probs=44.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEc-CeEEEEEEcCCch
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQ-KYTLNIWDVGGQR   71 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~   71 (185)
                      ...++++++|.||+|||||+|+|.+......++..+.+.....+. +..+.++||||..
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~  177 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGKGLELLDTPGIL  177 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCCcEEEEECCCcC
Confidence            456899999999999999999999987766666666555432221 3468899999953

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.86  E-value=7.6e-09  Score=70.44  Aligned_cols=83  Identities=19%  Similarity=0.178  Sum_probs=54.2

Q ss_pred             CEEEEEEeCCCcccHHHHHHHHH-HHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCC
Q 029920           85 DGLVWVVDSSDLRRLDDCKMELD-NLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTG  163 (185)
Q Consensus        85 d~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (185)
                      |++++|+|+.++.+...  .++. ..+.   ..++|+++|+||+|+.+.....++...+...     ...+++.+||+++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~---~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~-----~~~~ii~vSa~~~   70 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIERVLIK---EKGKKLILVLNKADLVPKEVLRKWLAYLRHS-----YPTIPFKISATNG   70 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHHHHHh---cCCCCEEEEEechhcCCHHHHHHHHHHHHhh-----CCceEEEEeccCC
Confidence            78999999988754432  1222 2222   2368999999999996532222222112111     2346899999999


Q ss_pred             CCHHHHHHHHHHHH
Q 029920          164 EGLLEGFDWLVQDI  177 (185)
Q Consensus       164 ~~i~~l~~~l~~~~  177 (185)
                      .|++++.+.+.+..
T Consensus        71 ~gi~~L~~~i~~~~   84 (155)
T cd01849          71 QGIEKKESAFTKQT   84 (155)
T ss_pred             cChhhHHHHHHHHh
Confidence            99999999887643

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.86  E-value=1.1e-07  Score=68.65  Aligned_cols=84  Identities=15%  Similarity=0.159  Sum_probs=56.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCC--CCccc----ccCcceEEEEEEE---cCeEEEEEEcCCchhh------HHHHH
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGE--DTSVI----SPTLGFNIKTVTY---QKYTLNIWDVGGQRTI------RSYWR   78 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~--~~~~~----~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~------~~~~~   78 (185)
                      .+-.-|+|+|++++|||||+|.|.+.  .+...    ..|.++-......   .+..+.++||+|....      .....
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~   84 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL   84 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence            34556999999999999999999998  55422    3344444443333   3578999999995432      22233


Q ss_pred             hhhcC--CCEEEEEEeCCCcc
Q 029920           79 NYFEQ--TDGLVWVVDSSDLR   97 (185)
Q Consensus        79 ~~~~~--~d~~i~v~d~~~~~   97 (185)
                      ..+..  ++++||..+.....
T Consensus        85 ~~l~~llss~~i~n~~~~~~~  105 (224)
T cd01851          85 FALATLLSSVLIYNSWETILG  105 (224)
T ss_pred             HHHHHHHhCEEEEeccCcccH
Confidence            33444  89999988877543

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.85  E-value=8.5e-09  Score=78.12  Aligned_cols=58  Identities=21%  Similarity=0.302  Sum_probs=47.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEc-CeEEEEEEcCCch
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQ-KYTLNIWDVGGQR   71 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~   71 (185)
                      ...++++|+|-||+|||||||+|.++.....++.+|++...-.+. +..+.++||||.-
T Consensus       130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii  188 (322)
T COG1161         130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGII  188 (322)
T ss_pred             ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCCeEEecCCCcC
Confidence            456889999999999999999999999988888888776654332 2358999999943

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.84  E-value=7.6e-08  Score=71.64  Aligned_cols=86  Identities=20%  Similarity=0.306  Sum_probs=61.1

Q ss_pred             hhccCceeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEc-----------------CeEEEEEEcCC
Q 029920           10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQ-----------------KYTLNIWDVGG   69 (185)
Q Consensus        10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g   69 (185)
                      +.+..+.+++.++|.||+||||+.|+|+.....   ....|+......+...                 .-.++++|.+|
T Consensus        14 ~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAG   93 (391)
T KOG1491|consen   14 LGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAG   93 (391)
T ss_pred             ccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecc
Confidence            344667899999999999999999999876653   1223444443333221                 14789999998


Q ss_pred             -------chhhHHHHHhhhcCCCEEEEEEeCCC
Q 029920           70 -------QRTIRSYWRNYFEQTDGLVWVVDSSD   95 (185)
Q Consensus        70 -------~~~~~~~~~~~~~~~d~~i~v~d~~~   95 (185)
                             .+.........++.+|+++-|+++..
T Consensus        94 LvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen   94 LVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             cccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence                   33445566677889999999998764

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.83  E-value=1.4e-08  Score=75.53  Aligned_cols=100  Identities=16%  Similarity=0.162  Sum_probs=66.4

Q ss_pred             cCCchh-hHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcc
Q 029920           67 VGGQRT-IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLE  145 (185)
Q Consensus        67 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~  145 (185)
                      .||+.. ........++.+|++++|+|+.++.+...  ..+...+     .+.|+++|+||+|+.+......+...+.. 
T Consensus         4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-   75 (276)
T TIGR03596         4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE-   75 (276)
T ss_pred             ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH-
Confidence            366533 33456677899999999999987644322  1222322     25899999999999643222222222211 


Q ss_pred             cccCccceEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920          146 AMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       146 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                           .+.+++.+||+++.|++++.+.+.+.+.+
T Consensus        76 -----~~~~vi~iSa~~~~gi~~L~~~i~~~~~~  104 (276)
T TIGR03596        76 -----KGIKALAINAKKGKGVKKIIKAAKKLLKE  104 (276)
T ss_pred             -----cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence                 22468999999999999999998887654

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=4.2e-08  Score=77.61  Aligned_cols=143  Identities=15%  Similarity=0.098  Sum_probs=84.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD   92 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   92 (185)
                      ..+++-++|+||||+||||||.+|........-..+.-....+......+.+..+|..  . .......+-+|.+++.+|
T Consensus        66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~D--l-~~miDvaKIaDLVlLlId  142 (1077)
T COG5192          66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSD--L-HQMIDVAKIADLVLLLID  142 (1077)
T ss_pred             CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChHH--H-HHHHhHHHhhheeEEEec
Confidence            4557888999999999999999987654422111111111123334467888888832  2 233445667899999999


Q ss_pred             CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccC-ccceEEEeecccC
Q 029920           93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDK-TRHWKIVGCSAYT  162 (185)
Q Consensus        93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~  162 (185)
                      .+-.  |+-..-.+..++....  -..++-|++..|+....+ .+.....+..-.+.. ..+..+|..|...
T Consensus       143 gnfG--fEMETmEFLnil~~HG--mPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~  210 (1077)
T COG5192         143 GNFG--FEMETMEFLNILISHG--MPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE  210 (1077)
T ss_pred             cccC--ceehHHHHHHHHhhcC--CCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence            9863  3322223344444322  245788999999865433 333444333222221 1456777777654

>cd01856 YlqF YlqF

Probab=98.82  E-value=1.1e-08  Score=70.71  Aligned_cols=98  Identities=15%  Similarity=0.134  Sum_probs=62.6

Q ss_pred             cCCch-hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcc
Q 029920           67 VGGQR-TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLE  145 (185)
Q Consensus        67 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~  145 (185)
                      .||+. +........++++|++++|+|+.++.....  ..+...+     .+.|+++|+||+|+.+........+.+.. 
T Consensus         2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-   73 (171)
T cd01856           2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN--PLLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFES-   73 (171)
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC--hhhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHh-
Confidence            35543 233455667889999999999987643221  1112211     25789999999998643221122111111 


Q ss_pred             cccCccceEEEeecccCCCCHHHHHHHHHHHH
Q 029920          146 AMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       146 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (185)
                           ....++.+||+++.|++++.+.+...+
T Consensus        74 -----~~~~vi~iSa~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          74 -----KGEKVLFVNAKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             -----cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence                 123579999999999999999988865

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01859 MJ1464 MJ1464

Probab=98.82  E-value=2.6e-08  Score=67.78  Aligned_cols=58  Identities=24%  Similarity=0.390  Sum_probs=43.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEE-EcCeEEEEEEcCCc
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVT-YQKYTLNIWDVGGQ   70 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~D~~g~   70 (185)
                      .....+++++|.+|+||||++|++.+......+++.+++...-. ..+..+.+|||||.
T Consensus        98 ~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpGi  156 (156)
T cd01859          98 DGKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPGV  156 (156)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence            34568899999999999999999998776666777776543221 12347899999993

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.82  E-value=1.1e-08  Score=75.99  Aligned_cols=56  Identities=21%  Similarity=0.463  Sum_probs=42.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEE--EEEcCeEEEEEEcCCc
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT--VTYQKYTLNIWDVGGQ   70 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~D~~g~   70 (185)
                      ...++++++|.||+|||||+|+|.+......+...+.+...  +..+ ..+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence            34689999999999999999999988765555555544333  2332 36799999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01856 YlqF YlqF

Probab=98.81  E-value=1.5e-08  Score=70.08  Aligned_cols=56  Identities=20%  Similarity=0.423  Sum_probs=41.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEE--EEEcCeEEEEEEcCCc
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT--VTYQKYTLNIWDVGGQ   70 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~D~~g~   70 (185)
                      ...++++++|.+|+|||||+|++.+.......+..+.+...  +..+ ..+.++||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence            45579999999999999999999998775444444433332  2232 46889999995

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.80  E-value=3.7e-08  Score=75.25  Aligned_cols=89  Identities=22%  Similarity=0.133  Sum_probs=63.4

Q ss_pred             hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecc
Q 029920           81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSA  160 (185)
Q Consensus        81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (185)
                      ..++|.+++|++.....++..+..|+....    ..++|+++|+||+|+.+.............  +.. .+.+++.+||
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--y~~-~g~~v~~vSA  190 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDI--YRN-IGYRVLMVSS  190 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHH--HHh-CCCeEEEEeC
Confidence            467899999999987778888877766442    236899999999999754322222211111  111 3568999999


Q ss_pred             cCCCCHHHHHHHHHHH
Q 029920          161 YTGEGLLEGFDWLVQD  176 (185)
Q Consensus       161 ~~~~~i~~l~~~l~~~  176 (185)
                      +++.|++++++.+...
T Consensus       191 ~tg~GideL~~~L~~k  206 (347)
T PRK12288        191 HTGEGLEELEAALTGR  206 (347)
T ss_pred             CCCcCHHHHHHHHhhC
Confidence            9999999999988653

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.79  E-value=2.7e-08  Score=80.69  Aligned_cols=113  Identities=21%  Similarity=0.274  Sum_probs=80.4

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHhCCCC---------------cccccCcceEEEE--EEE--cCeEEEEEEcCCch
Q 029920           11 KKKEKEMRILMVGLDNSGKTTIVLKINGEDT---------------SVISPTLGFNIKT--VTY--QKYTLNIWDVGGQR   71 (185)
Q Consensus        11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~~~---------------~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~   71 (185)
                      ...++..+++++.+..-|||||+..|....-               ..-..+.+++.+.  +..  .++.++++|+||+-
T Consensus         4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv   83 (887)
T KOG0467|consen    4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV   83 (887)
T ss_pred             CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence            3466778899999999999999999854322               1112344444443  222  67899999999999


Q ss_pred             hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCC
Q 029920           72 TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQD  128 (185)
Q Consensus        72 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D  128 (185)
                      .|.........-+|+.++.+|+...---+.     ..++++....+...++|+||+|
T Consensus        84 df~sevssas~l~d~alvlvdvvegv~~qt-----~~vlrq~~~~~~~~~lvinkid  135 (887)
T KOG0467|consen   84 DFSSEVSSASRLSDGALVLVDVVEGVCSQT-----YAVLRQAWIEGLKPILVINKID  135 (887)
T ss_pred             chhhhhhhhhhhcCCcEEEEeeccccchhH-----HHHHHHHHHccCceEEEEehhh
Confidence            999999999999999999999976322111     2222222233677899999999

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.78  E-value=3.5e-07  Score=72.26  Aligned_cols=100  Identities=14%  Similarity=0.287  Sum_probs=67.2

Q ss_pred             eEEEEEEcCC-------------chhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeec
Q 029920           60 YTLNIWDVGG-------------QRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANK  126 (185)
Q Consensus        60 ~~~~~~D~~g-------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK  126 (185)
                      ....++|.||             -+....+...|..+..++|+|+---   |.+..+....++.......+...|+|++|
T Consensus       412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTK  488 (980)
T KOG0447|consen  412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTK  488 (980)
T ss_pred             ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEee
Confidence            4678899999             2335567888999999999998432   34555555566666666668899999999


Q ss_pred             CCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCC
Q 029920          127 QDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTG  163 (185)
Q Consensus       127 ~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (185)
                      .|+.+.  .++..+...+.-..+.- ....+|.+-.-.|
T Consensus       489 VDlAEknlA~PdRI~kIleGKLFPM-KALGYfaVVTGrG  526 (980)
T KOG0447|consen  489 VDLAEKNVASPSRIQQIIEGKLFPM-KALGYFAVVTGKG  526 (980)
T ss_pred             cchhhhccCCHHHHHHHHhcCccch-hhcceeEEEecCC
Confidence            999765  45667777665443322 3334454433333

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.77  E-value=1.8e-08  Score=77.63  Aligned_cols=97  Identities=22%  Similarity=0.263  Sum_probs=64.4

Q ss_pred             chhhHHHHHhhhcCCCEEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC-CHHHHHHhcCcccc
Q 029920           70 QRTIRSYWRNYFEQTDGLVWVVDSSDLR-RLDDCKMELDNLLKEERLSGASLLILANKQDINGAL-TPTEIAKVLNLEAM  147 (185)
Q Consensus        70 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-~~~~~~~~~~~~~~  147 (185)
                      .+.+..+...+.+.++++++|+|+.+.. ++.   ..+....     .+.|+++|+||+|+.... ..+++...+.. ..
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~---~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~-~~  120 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLI---PELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKK-RA  120 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCCCcc---HHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHH-HH
Confidence            5677888888888999999999998743 222   2222222     267999999999986432 23333222110 01


Q ss_pred             cCccce---EEEeecccCCCCHHHHHHHHHHH
Q 029920          148 DKTRHW---KIVGCSAYTGEGLLEGFDWLVQD  176 (185)
Q Consensus       148 ~~~~~~---~~~~~Sa~~~~~i~~l~~~l~~~  176 (185)
                      .. .++   .++.+||+++.|++++++.+.+.
T Consensus       121 k~-~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       121 KE-LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HH-cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            11 222   48899999999999999998765

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.75  E-value=3.6e-08  Score=75.97  Aligned_cols=116  Identities=12%  Similarity=0.173  Sum_probs=64.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCC-----cccccCcceEEEEEEEc-CeEEEEEEcCCchhhHHHHHhhh--------
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDT-----SVISPTLGFNIKTVTYQ-KYTLNIWDVGGQRTIRSYWRNYF--------   81 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~-----~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~--------   81 (185)
                      ..++.++|.+|+|||||+|+|.+...     ...++..+++.....+. +..+.++||||....... ..++        
T Consensus       154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~~~~~-~~~l~~~~l~~~  232 (360)
T TIGR03597       154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIINSHQM-AHYLDKKDLKYI  232 (360)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCChhHh-hhhcCHHHHhhc
Confidence            46899999999999999999987543     23445555555544333 134679999996543221 1111        


Q ss_pred             ---cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHH
Q 029920           82 ---EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTE  137 (185)
Q Consensus        82 ---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~  137 (185)
                         +......++++....-.+..+.     .+......+..+.+.+++.+.......+.
T Consensus       233 ~~~~~i~~~~~~l~~~q~~~~ggl~-----~~d~~~~~~~~~~~~~~~~~~~h~t~~~~  286 (360)
T TIGR03597       233 TPKKEIKPKTYQLNPNQTLFLGGLA-----RFDYLKGEKTSFTFYVSNELNIHRTKLEN  286 (360)
T ss_pred             CCCCccCceEEEeCCCCEEEEceEE-----EEEEecCCceEEEEEccCCceeEeechhh
Confidence               2345556666544322111100     01111223566777888777554433333

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01855 YqeH YqeH

Probab=98.74  E-value=1.8e-08  Score=70.88  Aligned_cols=56  Identities=23%  Similarity=0.350  Sum_probs=38.9

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCC--------cccccCcceEEEEEEEcC-eEEEEEEcCCc
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDT--------SVISPTLGFNIKTVTYQK-YTLNIWDVGGQ   70 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~--------~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~   70 (185)
                      ...+++++|.+|+|||||+|+|.+...        ...+...+++.....+.- ..+.++||||.
T Consensus       126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtPG~  190 (190)
T cd01855         126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTPGI  190 (190)
T ss_pred             cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCCCCEEEeCcCC
Confidence            346899999999999999999987543        123344445544433321 26799999993

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.74  E-value=3e-08  Score=67.50  Aligned_cols=56  Identities=16%  Similarity=0.296  Sum_probs=38.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEE--EEEEcCeEEEEEEcCCc
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIK--TVTYQKYTLNIWDVGGQ   70 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~   70 (185)
                      ....+++++|.+|+||||++|+|.+......+...+.+..  .+..+ ..+.++||||.
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtPG~  155 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD-NKIKLLDTPGI  155 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec-CCEEEEECCCC
Confidence            4568899999999999999999998765333322222222  12222 46899999993

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>TIGR00092 GTP-binding protein YchF

Probab=98.73  E-value=1e-07  Score=72.90  Aligned_cols=79  Identities=20%  Similarity=0.165  Sum_probs=56.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCC-cc---cccCcceEEEEEEEcC-----------------eEEEEEEcCCchh---
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDT-SV---ISPTLGFNIKTVTYQK-----------------YTLNIWDVGGQRT---   72 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~-~~---~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~---   72 (185)
                      ++++++|.||+|||||.++|++... ..   ...|.......+.+.+                 ..+.+.|.||...   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999998766 32   2223443333333322                 4688999999432   


Q ss_pred             ----hHHHHHhhhcCCCEEEEEEeCCC
Q 029920           73 ----IRSYWRNYFEQTDGLVWVVDSSD   95 (185)
Q Consensus        73 ----~~~~~~~~~~~~d~~i~v~d~~~   95 (185)
                          ........++.+|+++.|+++.+
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~  109 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCFE  109 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence                34455667889999999999853

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.70  E-value=4.4e-08  Score=73.28  Aligned_cols=101  Identities=14%  Similarity=0.152  Sum_probs=66.7

Q ss_pred             EcCCchhh-HHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCc
Q 029920           66 DVGGQRTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNL  144 (185)
Q Consensus        66 D~~g~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~  144 (185)
                      -.||+... .......++.+|++++|+|+.++.+...  ..+...+.     +.|+++|+||+|+.+......+...+..
T Consensus         6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~-----~kp~iiVlNK~DL~~~~~~~~~~~~~~~   78 (287)
T PRK09563          6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG-----NKPRLLILNKSDLADPEVTKKWIEYFEE   78 (287)
T ss_pred             CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC-----CCCEEEEEEchhcCCHHHHHHHHHHHHH
Confidence            35776432 3455667889999999999987644322  22233322     5899999999998643222222222211


Q ss_pred             ccccCccceEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920          145 EAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       145 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                            .+.+++.+||+++.|++++.+.+.+.+.+
T Consensus        79 ------~~~~vi~vSa~~~~gi~~L~~~l~~~l~~  107 (287)
T PRK09563         79 ------QGIKALAINAKKGQGVKKILKAAKKLLKE  107 (287)
T ss_pred             ------cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence                  23468999999999999999988877654

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.70  E-value=2.8e-08  Score=66.54  Aligned_cols=79  Identities=20%  Similarity=0.184  Sum_probs=49.5

Q ss_pred             HhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEe
Q 029920           78 RNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVG  157 (185)
Q Consensus        78 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      ...++.+|++++|+|+.++.+...  ..+..++.... .++|+++|+||+|+.++....++...+..      .+.+++.
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~------~~~~ii~   76 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRP--PDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKK------EGIVVVF   76 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCC--HHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHh------cCCeEEE
Confidence            455789999999999988754331  12233333211 46899999999998654322223332221      2356889


Q ss_pred             ecccCCCC
Q 029920          158 CSAYTGEG  165 (185)
Q Consensus       158 ~Sa~~~~~  165 (185)
                      +||+++.+
T Consensus        77 iSa~~~~~   84 (141)
T cd01857          77 FSALKENA   84 (141)
T ss_pred             EEecCCCc
Confidence            99988753

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.70  E-value=7.9e-08  Score=72.58  Aligned_cols=151  Identities=19%  Similarity=0.212  Sum_probs=91.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCc-----------------cccc-------CcceEEE--EEEE------------
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTS-----------------VISP-------TLGFNIK--TVTY------------   57 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~-----------------~~~~-------t~~~~~~--~~~~------------   57 (185)
                      .++++|+|...+|||||+--|......                 ....       +.++...  .+.+            
T Consensus       167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~  246 (591)
T KOG1143|consen  167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK  246 (591)
T ss_pred             EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence            469999999999999998777543221                 0011       1111111  0111            


Q ss_pred             cCeEEEEEEcCCchhhHHHHHhhhc--CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH
Q 029920           58 QKYTLNIWDVGGQRTIRSYWRNYFE--QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP  135 (185)
Q Consensus        58 ~~~~~~~~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~  135 (185)
                      ...-+.++|.+|+.++.......+.  ..|...+|+.+...-.+. ..+.+- +...   -++|+.++.+|+|+.+....
T Consensus       247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLg-l~~A---L~iPfFvlvtK~Dl~~~~~~  321 (591)
T KOG1143|consen  247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLG-LIAA---LNIPFFVLVTKMDLVDRQGL  321 (591)
T ss_pred             hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHH-HHHH---hCCCeEEEEEeeccccchhH
Confidence            2356889999999887665544443  358888899887643322 122222 2222   27999999999999877544


Q ss_pred             HHHHHhc----Cc--------------------ccccCccceEEEeecccCCCCHHHHHH
Q 029920          136 TEIAKVL----NL--------------------EAMDKTRHWKIVGCSAYTGEGLLEGFD  171 (185)
Q Consensus       136 ~~~~~~~----~~--------------------~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (185)
                      +.....+    ..                    +.+...+..|+|.+|+.+|++++-+-.
T Consensus       322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~  381 (591)
T KOG1143|consen  322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT  381 (591)
T ss_pred             HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence            3322211    11                    112223667999999999999875443

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.69  E-value=3.8e-07  Score=68.09  Aligned_cols=146  Identities=20%  Similarity=0.183  Sum_probs=90.6

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHhC----CCC------c-----ccccCcc--eEEEEEEE--cCeEEEEEEcCCch
Q 029920           11 KKKEKEMRILMVGLDNSGKTTIVLKING----EDT------S-----VISPTLG--FNIKTVTY--QKYTLNIWDVGGQR   71 (185)
Q Consensus        11 ~~~~~~~~i~v~G~~~~GKttli~~l~~----~~~------~-----~~~~t~~--~~~~~~~~--~~~~~~~~D~~g~~   71 (185)
                      .+.+...+|.-+|+..-|||||-.++..    ...      .     ....-.+  +....+++  ....+.=.|+||+.
T Consensus        49 ~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHA  128 (449)
T KOG0460|consen   49 VRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHA  128 (449)
T ss_pred             ccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchH
Confidence            3466778999999999999999766532    111      0     1111222  33333444  34667788999999


Q ss_pred             hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHH-----HHHHhcCccc
Q 029920           72 TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPT-----EIAKVLNLEA  146 (185)
Q Consensus        72 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-----~~~~~~~~~~  146 (185)
                      .+-....-...+.|+.|+|+.++|... ...++.+.-..+-   .-..++|.+||.|+.++.+..     ++.+.+....
T Consensus       129 DYIKNMItGaaqMDGaILVVaatDG~M-PQTrEHlLLArQV---GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~g  204 (449)
T KOG0460|consen  129 DYIKNMITGAAQMDGAILVVAATDGPM-PQTREHLLLARQV---GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFG  204 (449)
T ss_pred             HHHHHhhcCccccCceEEEEEcCCCCC-cchHHHHHHHHHc---CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcC
Confidence            988777777788999999999999543 2333322222111   125688889999998553332     3334444333


Q ss_pred             ccCccceEEEeeccc
Q 029920          147 MDKTRHWKIVGCSAY  161 (185)
Q Consensus       147 ~~~~~~~~~~~~Sa~  161 (185)
                      +.. ...|++.=||.
T Consensus       205 f~G-d~~PvI~GSAL  218 (449)
T KOG0460|consen  205 FDG-DNTPVIRGSAL  218 (449)
T ss_pred             CCC-CCCCeeecchh
Confidence            433 56677775544

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=1e-06  Score=71.10  Aligned_cols=115  Identities=19%  Similarity=0.291  Sum_probs=69.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc--ccccCcce----------------------------------------
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS--VISPTLGF----------------------------------------   50 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~--~~~~t~~~----------------------------------------   50 (185)
                      .+...||++.|..++||||++|++...+.-  ...+++..                                        
T Consensus       106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~  185 (749)
T KOG0448|consen  106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD  185 (749)
T ss_pred             hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence            566789999999999999999998654431  11111110                                        


Q ss_pred             ----EEEEEEEc-C------eEEEEEEcCCc---hhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccC
Q 029920           51 ----NIKTVTYQ-K------YTLNIWDVGGQ---RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLS  116 (185)
Q Consensus        51 ----~~~~~~~~-~------~~~~~~D~~g~---~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  116 (185)
                          ..-.+-+. +      -.+.++|.||.   .....-...+...+|++|||.++-+.-+.. ..+.+...    ...
T Consensus       186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~s-ek~Ff~~v----s~~  260 (749)
T KOG0448|consen  186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLS-EKQFFHKV----SEE  260 (749)
T ss_pred             cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHH-HHHHHHHh----hcc
Confidence                00001111 1      25788899994   344455556678899999999887643222 22222222    222


Q ss_pred             CCeEEEEeecCCCCCC
Q 029920          117 GASLLILANKQDINGA  132 (185)
Q Consensus       117 ~~~~ivv~nK~D~~~~  132 (185)
                      +..+.++-||+|....
T Consensus       261 KpniFIlnnkwDasas  276 (749)
T KOG0448|consen  261 KPNIFILNNKWDASAS  276 (749)
T ss_pred             CCcEEEEechhhhhcc
Confidence            5567777799997654

>PRK14974 cell division protein FtsY; Provisional

Probab=98.57  E-value=1.5e-07  Score=71.51  Aligned_cols=97  Identities=10%  Similarity=0.059  Sum_probs=54.2

Q ss_pred             CeEEEEEEcCCchhhHH----HHHhh--hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           59 KYTLNIWDVGGQRTIRS----YWRNY--FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        59 ~~~~~~~D~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      +..+.++||+|......    .....  ....|.+++|+|+.....   .......+...    -..--+++||.|....
T Consensus       222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d---~~~~a~~f~~~----~~~~giIlTKlD~~~~  294 (336)
T PRK14974        222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND---AVEQAREFNEA----VGIDGVILTKVDADAK  294 (336)
T ss_pred             CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh---HHHHHHHHHhc----CCCCEEEEeeecCCCC
Confidence            45799999999543211    11111  235789999999976432   22222222221    1236688999998654


Q ss_pred             CCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHH
Q 029920          133 LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDW  172 (185)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (185)
                      ... -+.....       .+.|+..++  +|++++++..+
T Consensus       295 ~G~-~ls~~~~-------~~~Pi~~i~--~Gq~v~Dl~~~  324 (336)
T PRK14974        295 GGA-ALSIAYV-------IGKPILFLG--VGQGYDDLIPF  324 (336)
T ss_pred             ccH-HHHHHHH-------HCcCEEEEe--CCCChhhcccC
Confidence            332 2221111       345666665  78888887543

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.56  E-value=6.3e-06  Score=55.45  Aligned_cols=24  Identities=46%  Similarity=0.699  Sum_probs=21.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHh
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~   37 (185)
                      +..++|.+-|+||+||||++.++.
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~   26 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIA   26 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHH
Confidence            456899999999999999988875

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.55  E-value=9.5e-07  Score=66.88  Aligned_cols=140  Identities=16%  Similarity=0.130  Sum_probs=75.6

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCC------Cc----cc------------ccCcceEEEEE-----------------
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGED------TS----VI------------SPTLGFNIKTV-----------------   55 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~------~~----~~------------~~t~~~~~~~~-----------------   55 (185)
                      +.-.++++|++|+||||++..|.+..      ..    ..            ....+......                 
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~  192 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA  192 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            34578999999999999988874311      10    00            00011111100                 


Q ss_pred             EEcCeEEEEEEcCCchhhHH----HHHhh--------hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEE
Q 029920           56 TYQKYTLNIWDVGGQRTIRS----YWRNY--------FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLIL  123 (185)
Q Consensus        56 ~~~~~~~~~~D~~g~~~~~~----~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv  123 (185)
                      ..+++.+.++||||......    .....        -..++..++|+|++..  .+...+ ...+...    -.+.-+|
T Consensus       193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~----~~~~giI  265 (318)
T PRK10416        193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEA----VGLTGII  265 (318)
T ss_pred             HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhh----CCCCEEE
Confidence            11346899999999532111    11111        1246889999999853  222222 2333221    1345789


Q ss_pred             eecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHH
Q 029920          124 ANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFD  171 (185)
Q Consensus       124 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (185)
                      +||.|......  .+......      .+.|+..++  +|++++++..
T Consensus       266 lTKlD~t~~~G--~~l~~~~~------~~~Pi~~v~--~Gq~~~Dl~~  303 (318)
T PRK10416        266 LTKLDGTAKGG--VVFAIADE------LGIPIKFIG--VGEGIDDLQP  303 (318)
T ss_pred             EECCCCCCCcc--HHHHHHHH------HCCCEEEEe--CCCChhhCcc
Confidence            99999654322  22221111      355777776  7788877643

>PRK12288 GTPase RsgA; Reviewed

Probab=98.55  E-value=2.6e-07  Score=70.68  Aligned_cols=56  Identities=16%  Similarity=0.265  Sum_probs=35.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcccccCc---c------eEEEEEEEcCeEEEEEEcCCchhhH
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVISPTL---G------FNIKTVTYQKYTLNIWDVGGQRTIR   74 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~---~------~~~~~~~~~~~~~~~~D~~g~~~~~   74 (185)
                      .++++|.+|+|||||+|+|.+..........   +      .....+...+ ...++||||..++.
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~-~~~liDTPGir~~~  271 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH-GGDLIDSPGVREFG  271 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC-CCEEEECCCCCccc
Confidence            3789999999999999999987553222111   1      1122223321 22599999976654

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.54  E-value=1.4e-06  Score=76.44  Aligned_cols=112  Identities=19%  Similarity=0.277  Sum_probs=65.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcccc-----cC--cceEEEEEEE-cCeEEEEEEcCCc----h----hhHHHHHhh
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVIS-----PT--LGFNIKTVTY-QKYTLNIWDVGGQ----R----TIRSYWRNY   80 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~-----~t--~~~~~~~~~~-~~~~~~~~D~~g~----~----~~~~~~~~~   80 (185)
                      +=.+|+|++|+||||++..- |..++...     .+  .+-+. .+++ -.-+-.++||+|.    +    .....|..+
T Consensus       112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~f  189 (1169)
T TIGR03348       112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGF  189 (1169)
T ss_pred             CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecCCEEEEcCCCccccCCCcccccHHHHHHH
Confidence            44789999999999999876 44443211     11  11111 1111 1235679999992    1    223344444


Q ss_pred             h---------cCCCEEEEEEeCCCc-----ccHH----HHHHHHHHHHhccccCCCeEEEEeecCCCCC
Q 029920           81 F---------EQTDGLVWVVDSSDL-----RRLD----DCKMELDNLLKEERLSGASLLILANKQDING  131 (185)
Q Consensus        81 ~---------~~~d~~i~v~d~~~~-----~s~~----~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  131 (185)
                      +         +-.+++|+++|+.+-     +...    .++..+.++... -....|+.|++||+|+..
T Consensus       190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhhc
Confidence            3         347999999997752     1111    223333333333 234699999999999875

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PRK13796 GTPase YqeH; Provisional

Probab=98.54  E-value=2.2e-07  Score=71.73  Aligned_cols=65  Identities=23%  Similarity=0.296  Sum_probs=42.0

Q ss_pred             HHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCC-----cccccCcceEEEEEEEc-CeEEEEEEcCCch
Q 029920            7 IRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDT-----SVISPTLGFNIKTVTYQ-KYTLNIWDVGGQR   71 (185)
Q Consensus         7 ~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~-----~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~   71 (185)
                      +....+.....++.++|.+|+|||||+|+|.+...     ...++..+++.....+. +....++||||..
T Consensus       151 ~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi~  221 (365)
T PRK13796        151 LEAIEKYREGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGII  221 (365)
T ss_pred             HHHHHHhcCCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCcc
Confidence            33333333446899999999999999999986432     22445555555544331 1235799999964

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.52  E-value=2.1e-07  Score=68.56  Aligned_cols=163  Identities=16%  Similarity=0.162  Sum_probs=97.5

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc----ccccCcce-------E--------------EEEE----------EE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS----VISPTLGF-------N--------------IKTV----------TY   57 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~----~~~~t~~~-------~--------------~~~~----------~~   57 (185)
                      +...++|.-+|+.--||||++.++.|-+.-    +....+..       .              ++.+          +.
T Consensus        35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~  114 (466)
T KOG0466|consen   35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR  114 (466)
T ss_pred             heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence            456799999999999999999998664331    00000000       0              0000          00


Q ss_pred             c----C----eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCC
Q 029920           58 Q----K----YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI  129 (185)
Q Consensus        58 ~----~----~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~  129 (185)
                      .    .    ..+.++|.||++-.-+.......-.|+.++.+.++.+-.-....+.+..+--. .  =+.++++-||+|+
T Consensus       115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM-~--LkhiiilQNKiDl  191 (466)
T KOG0466|consen  115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM-K--LKHIIILQNKIDL  191 (466)
T ss_pred             CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh-h--hceEEEEechhhh
Confidence            0    0    35678999999765555444445568889988887632222222222222111 1  1568999999999


Q ss_pred             CCCCCHHHHHHhcC-cccccCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          130 NGALTPTEIAKVLN-LEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       130 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      .......+..+... ...-..-.+.|++++||.-++|++.+.+.|++.+.
T Consensus       192 i~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP  241 (466)
T KOG0466|consen  192 IKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP  241 (466)
T ss_pred             hhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence            76543332222111 00001114679999999999999999999998874

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.51  E-value=1e-07  Score=75.74  Aligned_cols=121  Identities=19%  Similarity=0.165  Sum_probs=83.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCcc---------------------cccCcceEEEEEEEcCeEEEEEEcCCchhh
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSV---------------------ISPTLGFNIKTVTYQKYTLNIWDVGGQRTI   73 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~---------------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~   73 (185)
                      +..+|.+..+-.+||||+-+++.-..-..                     ..-|+...-..+.+.++.++++||||+-.|
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF  117 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF  117 (721)
T ss_pred             hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence            44579999999999999988864322110                     001222222345677899999999999999


Q ss_pred             HHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHH
Q 029920           74 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAK  140 (185)
Q Consensus        74 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~  140 (185)
                      ....+..++-.|+.++++|+...-.-+. ...+++..+    .++|.+..+||.|.........+..
T Consensus       118 T~EVeRALrVlDGaVlvl~aV~GVqsQt-~tV~rQ~~r----y~vP~i~FiNKmDRmGa~~~~~l~~  179 (721)
T KOG0465|consen  118 TFEVERALRVLDGAVLVLDAVAGVESQT-ETVWRQMKR----YNVPRICFINKMDRMGASPFRTLNQ  179 (721)
T ss_pred             EEEehhhhhhccCeEEEEEcccceehhh-HHHHHHHHh----cCCCeEEEEehhhhcCCChHHHHHH
Confidence            9888999999999999999886432222 222333333    3899999999999876655544443

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.49  E-value=5.4e-07  Score=66.79  Aligned_cols=97  Identities=13%  Similarity=0.064  Sum_probs=54.9

Q ss_pred             cCeEEEEEEcCCchhhHHHHH-------hhh-----cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEee
Q 029920           58 QKYTLNIWDVGGQRTIRSYWR-------NYF-----EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILAN  125 (185)
Q Consensus        58 ~~~~~~~~D~~g~~~~~~~~~-------~~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~n  125 (185)
                      +++.+.++||||.........       ...     ..+|.+++|+|++..  .+... ....+.+..    .+.-+++|
T Consensus       153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~----~~~g~IlT  225 (272)
T TIGR00064       153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV----GLTGIILT  225 (272)
T ss_pred             CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC----CCCEEEEE
Confidence            357899999999643222211       111     238999999999753  22222 223333221    24678999


Q ss_pred             cCCCCCCCCH-HHHHHhcCcccccCccceEEEeecccCCCCHHHHHHH
Q 029920          126 KQDINGALTP-TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDW  172 (185)
Q Consensus       126 K~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (185)
                      |.|....... -.+...         .+.|+..++  +|++++++...
T Consensus       226 KlDe~~~~G~~l~~~~~---------~~~Pi~~~~--~Gq~~~dl~~~  262 (272)
T TIGR00064       226 KLDGTAKGGIILSIAYE---------LKLPIKFIG--VGEKIDDLAPF  262 (272)
T ss_pred             ccCCCCCccHHHHHHHH---------HCcCEEEEe--CCCChHhCccC
Confidence            9998654332 122221         345666666  78888776543

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.49  E-value=9.9e-08  Score=64.75  Aligned_cols=57  Identities=19%  Similarity=0.215  Sum_probs=33.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcc------eEEEEEEEcCeEEEEEEcCCchhhH
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS---VISPTLG------FNIKTVTYQKYTLNIWDVGGQRTIR   74 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~------~~~~~~~~~~~~~~~~D~~g~~~~~   74 (185)
                      -.++++|++|+|||||+|+|.+....   ..+...+      .....+... ....++||||..++.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~-~g~~iIDTPGf~~~~  101 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLP-DGGYIIDTPGFRSFG  101 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEET-TSEEEECSHHHHT--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecC-CCcEEEECCCCCccc
Confidence            57899999999999999999987432   1221111      112223332 246899999966543

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.47  E-value=2.6e-06  Score=66.66  Aligned_cols=110  Identities=19%  Similarity=0.220  Sum_probs=62.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHh------CCCCccc----------------ccCcceEEEEEE-----------------
Q 029920           16 EMRILMVGLDNSGKTTIVLKIN------GEDTSVI----------------SPTLGFNIKTVT-----------------   56 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~------~~~~~~~----------------~~t~~~~~~~~~-----------------   56 (185)
                      +-.|+++|++||||||++..|.      +.+....                ....+.......                 
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~  179 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK  179 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence            4568999999999999998885      3222100                001111111110                 


Q ss_pred             EcCeEEEEEEcCCchhhHH----HHHhh--hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC
Q 029920           57 YQKYTLNIWDVGGQRTIRS----YWRNY--FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN  130 (185)
Q Consensus        57 ~~~~~~~~~D~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  130 (185)
                      .+++.+.++||||......    ....+  ...+|.+++|+|++-...-....   ..+...    -.+.-+|+||.|..
T Consensus       180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a---~~F~~~----~~~~g~IlTKlD~~  252 (429)
T TIGR01425       180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA---KAFKDS----VDVGSVIITKLDGH  252 (429)
T ss_pred             hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH---HHHHhc----cCCcEEEEECccCC
Confidence            0257899999999543321    11111  23568899999987543222222   222111    24577889999975


Q ss_pred             CC
Q 029920          131 GA  132 (185)
Q Consensus       131 ~~  132 (185)
                      ..
T Consensus       253 ar  254 (429)
T TIGR01425       253 AK  254 (429)
T ss_pred             CC
Confidence            43

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.45  E-value=2.9e-07  Score=70.47  Aligned_cols=54  Identities=11%  Similarity=0.151  Sum_probs=34.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcccccCcc---------eEEEEEEEcCeEEEEEEcCCchh
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLG---------FNIKTVTYQKYTLNIWDVGGQRT   72 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~---------~~~~~~~~~~~~~~~~D~~g~~~   72 (185)
                      .++++|++|+|||||+|+|.+..........+         .....+...+ ...++||||...
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~-g~~liDTPG~~~  236 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPN-GGLLADTPGFNQ  236 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCC-CcEEEeCCCccc
Confidence            38999999999999999999765533222111         1122233322 127999999543

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.45  E-value=3.1e-07  Score=67.12  Aligned_cols=53  Identities=13%  Similarity=0.201  Sum_probs=35.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcccc---c--------CcceEEEEEEEcCeEEEEEEcCCchhh
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVIS---P--------TLGFNIKTVTYQKYTLNIWDVGGQRTI   73 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~---~--------t~~~~~~~~~~~~~~~~~~D~~g~~~~   73 (185)
                      -.++++|.+|+|||||+|+|.+.......   .        |.....  +..++  ..++||||...+
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l--~~l~~--~~liDtPG~~~~  184 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVEL--FHFHG--GLIADTPGFNEF  184 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEE--EEcCC--cEEEeCCCcccc
Confidence            47899999999999999999886442211   1        112222  22322  379999997653

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.44  E-value=7.6e-08  Score=73.60  Aligned_cols=112  Identities=19%  Similarity=0.090  Sum_probs=80.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCC--------Cc-------------ccccCcceEEEEEEEcCeEEEEEEcCCchhhH
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGED--------TS-------------VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR   74 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~--------~~-------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~   74 (185)
                      ..+|.++.+-.+||||.-.++.-..        ..             ..+-|+...-..++|.+..++++||||+-.|+
T Consensus        37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~  116 (753)
T KOG0464|consen   37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR  116 (753)
T ss_pred             hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence            3579999999999999988863211        10             00112222233467889999999999999999


Q ss_pred             HHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        75 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      -..+.+++--|+.+.|+|++..-.-+.+.- |++.    ...++|-+.++||+|....
T Consensus       117 leverclrvldgavav~dasagve~qtltv-wrqa----dk~~ip~~~finkmdk~~a  169 (753)
T KOG0464|consen  117 LEVERCLRVLDGAVAVFDASAGVEAQTLTV-WRQA----DKFKIPAHCFINKMDKLAA  169 (753)
T ss_pred             EEHHHHHHHhcCeEEEEeccCCcccceeee-ehhc----cccCCchhhhhhhhhhhhh
Confidence            999999999999999999986433232222 2332    4447999999999997654

>PRK13796 GTPase YqeH; Provisional

Probab=98.38  E-value=2.1e-06  Score=66.42  Aligned_cols=96  Identities=19%  Similarity=0.178  Sum_probs=57.5

Q ss_pred             hhhHHHHHhhhcCCC-EEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC-CHHHHHHhcCcccc
Q 029920           71 RTIRSYWRNYFEQTD-GLVWVVDSSDLR-RLDDCKMELDNLLKEERLSGASLLILANKQDINGAL-TPTEIAKVLNLEAM  147 (185)
Q Consensus        71 ~~~~~~~~~~~~~~d-~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-~~~~~~~~~~~~~~  147 (185)
                      +.+...... +...+ .+++|+|+.|.. ++.   ..+..+.     .+.|+++|+||+|+.... ..+++...... ..
T Consensus        57 ~~~~~~l~~-i~~~~~lIv~VVD~~D~~~s~~---~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~-~~  126 (365)
T PRK13796         57 DDFLKLLNG-IGDSDALVVNVVDIFDFNGSWI---PGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQ-EA  126 (365)
T ss_pred             HHHHHHHHh-hcccCcEEEEEEECccCCCchh---HHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHH-HH
Confidence            344444433 34445 889999998732 222   2222222     267899999999986432 22222222111 11


Q ss_pred             cCccc---eEEEeecccCCCCHHHHHHHHHHHH
Q 029920          148 DKTRH---WKIVGCSAYTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       148 ~~~~~---~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (185)
                      .. .+   ..++.+||+++.|++++++.+.+..
T Consensus       127 k~-~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~  158 (365)
T PRK13796        127 KE-LGLRPVDVVLISAQKGHGIDELLEAIEKYR  158 (365)
T ss_pred             Hh-cCCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence            11 12   2579999999999999999997764

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.35  E-value=3.2e-06  Score=64.18  Aligned_cols=157  Identities=18%  Similarity=0.175  Sum_probs=90.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCc-----------------ccc--cCcc-----eEE------------------E
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTS-----------------VIS--PTLG-----FNI------------------K   53 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~-----------------~~~--~t~~-----~~~------------------~   53 (185)
                      ..+|+|+|...+|||||+--|.+....                 +..  +..+     +..                  +
T Consensus       133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk  212 (641)
T KOG0463|consen  133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK  212 (641)
T ss_pred             eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence            479999999999999998777543321                 000  1111     100                  0


Q ss_pred             EEEEcCeEEEEEEcCCchhhHHHHHhhh--cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC
Q 029920           54 TVTYQKYTLNIWDVGGQRTIRSYWRNYF--EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING  131 (185)
Q Consensus        54 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  131 (185)
                      ..+....-+.++|.+|++.+........  .-.|..++++-++..- .--..+.+--.+..    ..|+.+|.+|+|...
T Consensus       213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLALaL----~VPVfvVVTKIDMCP  287 (641)
T KOG0463|consen  213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLALAL----HVPVFVVVTKIDMCP  287 (641)
T ss_pred             eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhhhh----cCcEEEEEEeeccCc
Confidence            0111225688999999998765443322  3468888888776421 11112222222222    699999999999987


Q ss_pred             CCCHHHHHHhc----Ccc--------------------cccCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          132 ALTPTEIAKVL----NLE--------------------AMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       132 ~~~~~~~~~~~----~~~--------------------~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      ++...+-...+    ...                    .+....-+|+|.+|..+|.|++-+. .....+.
T Consensus       288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLk-mFLNlls  357 (641)
T KOG0463|consen  288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLK-MFLNLLS  357 (641)
T ss_pred             HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHH-HHHhhcC
Confidence            65444322211    110                    1111245789999999999996544 3344443

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.35  E-value=2.8e-06  Score=61.99  Aligned_cols=128  Identities=16%  Similarity=0.194  Sum_probs=77.1

Q ss_pred             HHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccc-----cCcceEEEEEEE--cC--eEEEEEEcCCchh------
Q 029920            8 RKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVIS-----PTLGFNIKTVTY--QK--YTLNIWDVGGQRT------   72 (185)
Q Consensus         8 ~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~-----~t~~~~~~~~~~--~~--~~~~~~D~~g~~~------   72 (185)
                      +.+-...-.++|+-+|..|.|||||+.+|.+-.+....     |+......+.+.  .+  ..+.++||.|-..      
T Consensus        34 ~ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~  113 (406)
T KOG3859|consen   34 NKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKED  113 (406)
T ss_pred             HHHHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCccc
Confidence            33444556799999999999999999999988775332     222222222222  23  5788999999111      


Q ss_pred             --------hHHHHHhhh---------------cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCC
Q 029920           73 --------IRSYWRNYF---------------EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI  129 (185)
Q Consensus        73 --------~~~~~~~~~---------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~  129 (185)
                              ..+..+.|+               ...++++|.+..+. .++..+......-+..    ...+|-++-|.|.
T Consensus       114 Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Lds----kVNIIPvIAKaDt  188 (406)
T KOG3859|consen  114 SYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLDS----KVNIIPVIAKADT  188 (406)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHhh----hhhhHHHHHHhhh
Confidence                    111122222               34688888887764 3555544333333332    5778888999998


Q ss_pred             CCCCCHHHHHH
Q 029920          130 NGALTPTEIAK  140 (185)
Q Consensus       130 ~~~~~~~~~~~  140 (185)
                      ....+......
T Consensus       189 isK~eL~~FK~  199 (406)
T KOG3859|consen  189 ISKEELKRFKI  199 (406)
T ss_pred             hhHHHHHHHHH
Confidence            76655444443

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.30  E-value=3.8e-06  Score=57.31  Aligned_cols=22  Identities=32%  Similarity=0.434  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      -+.+.|+.|+|||||++.+...
T Consensus         2 ~~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           2 VTVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc
Confidence            3678999999999999988654

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.29  E-value=5.8e-06  Score=63.74  Aligned_cols=84  Identities=23%  Similarity=0.197  Sum_probs=55.3

Q ss_pred             hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecc
Q 029920           81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSA  160 (185)
Q Consensus        81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (185)
                      ..++|.+++|+++..+-+...+..++...    ...+++.++|+||+|+.+.  ..+....+..  .  ..+.+++.+|+
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a----~~~~i~piIVLNK~DL~~~--~~~~~~~~~~--~--~~g~~Vi~vSa  179 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALA----WESGAEPVIVLTKADLCED--AEEKIAEVEA--L--APGVPVLAVSA  179 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHH----HHcCCCEEEEEEChhcCCC--HHHHHHHHHH--h--CCCCcEEEEEC
Confidence            57889999999996433333333333333    2236788999999999754  2112111111  1  14678999999


Q ss_pred             cCCCCHHHHHHHHH
Q 029920          161 YTGEGLLEGFDWLV  174 (185)
Q Consensus       161 ~~~~~i~~l~~~l~  174 (185)
                      +++.|++++.+++.
T Consensus       180 ~~g~gl~~L~~~L~  193 (356)
T PRK01889        180 LDGEGLDVLAAWLS  193 (356)
T ss_pred             CCCccHHHHHHHhh
Confidence            99999999888764

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.27  E-value=1.4e-06  Score=65.17  Aligned_cols=57  Identities=14%  Similarity=0.085  Sum_probs=36.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCccccc-------CcceE--EEEEEEcCeEEEEEEcCCchhhH
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVISP-------TLGFN--IKTVTYQKYTLNIWDVGGQRTIR   74 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~-------t~~~~--~~~~~~~~~~~~~~D~~g~~~~~   74 (185)
                      -.++++|++|+|||||+|+|.+........       ...++  ...+...+ ...++||||..++.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCccC
Confidence            579999999999999999998865432211       00111  12222221 23699999987643

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.27  E-value=2.2e-06  Score=65.95  Aligned_cols=116  Identities=12%  Similarity=0.133  Sum_probs=62.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCC------c--cc-ccC---------------cceEEEEE-----------EEcCeE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDT------S--VI-SPT---------------LGFNIKTV-----------TYQKYT   61 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~------~--~~-~~t---------------~~~~~~~~-----------~~~~~~   61 (185)
                      -.++++|++|+||||++..|.....      .  .. ..+               .+......           ...+..
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D  217 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH  217 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence            4788999999999999988854211      0  00 001               11111111           123568


Q ss_pred             EEEEEcCCchhhHHH---HHhhh---cCCCEEEEEEeCCC-cccHHHHHHHHHHHHhccccC-CCeEEEEeecCCCCCC
Q 029920           62 LNIWDVGGQRTIRSY---WRNYF---EQTDGLVWVVDSSD-LRRLDDCKMELDNLLKEERLS-GASLLILANKQDINGA  132 (185)
Q Consensus        62 ~~~~D~~g~~~~~~~---~~~~~---~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~-~~~~ivv~nK~D~~~~  132 (185)
                      +.++||+|.......   ....+   ...+-.++|++++. .+......+.+.......... ...-=+|+||.|....
T Consensus       218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~  296 (374)
T PRK14722        218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN  296 (374)
T ss_pred             EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC
Confidence            999999995532211   11112   23456688999886 333344333333332111000 0134578899997654

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.25  E-value=6.5e-05  Score=58.24  Aligned_cols=149  Identities=20%  Similarity=0.211  Sum_probs=79.2

Q ss_pred             HHHHHh-hccCceeEEEEEcCCCCChHHHHHHHhCCCC-----------------c--ccccCcceE--------EEEEE
Q 029920            5 SIIRKI-KKKEKEMRILMVGLDNSGKTTIVLKINGEDT-----------------S--VISPTLGFN--------IKTVT   56 (185)
Q Consensus         5 ~~~~~~-~~~~~~~~i~v~G~~~~GKttli~~l~~~~~-----------------~--~~~~t~~~~--------~~~~~   56 (185)
                      ..++.. .+-...+=++|+||.-+||||||++|...-.                 +  ..+.|+-++        -..+.
T Consensus         5 ~iykDIa~RT~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~   84 (492)
T PF09547_consen    5 DIYKDIAERTGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEIT   84 (492)
T ss_pred             hHHHHHHHhcCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEE
Confidence            344443 2345678899999999999999999843111                 1  111111111        11122


Q ss_pred             E---cCeEEEEEEcCC-------------chh------------hHHH----HHhhh--cCCCEEEEEEeCC--C--ccc
Q 029920           57 Y---QKYTLNIWDVGG-------------QRT------------IRSY----WRNYF--EQTDGLVWVVDSS--D--LRR   98 (185)
Q Consensus        57 ~---~~~~~~~~D~~g-------------~~~------------~~~~----~~~~~--~~~d~~i~v~d~~--~--~~s   98 (185)
                      .   -..+++++|+.|             .++            |...    .+..+  +..=++++.-|.+  +  +++
T Consensus        85 l~~~~~~kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~  164 (492)
T PF09547_consen   85 LDDGIKVKVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPREN  164 (492)
T ss_pred             ecCCceEEEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHH
Confidence            2   237899999988             000            1100    01111  1223566666655  2  455


Q ss_pred             HHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccC
Q 029920           99 LDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYT  162 (185)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (185)
                      +..+.+..-.-++..   ++|+++++|-.+-.+. +..++...+..     ..+.|++++++..
T Consensus       165 Y~eAEervI~ELk~i---gKPFvillNs~~P~s~-et~~L~~eL~e-----kY~vpVlpvnc~~  219 (492)
T PF09547_consen  165 YVEAEERVIEELKEI---GKPFVILLNSTKPYSE-ETQELAEELEE-----KYDVPVLPVNCEQ  219 (492)
T ss_pred             HHHHHHHHHHHHHHh---CCCEEEEEeCCCCCCH-HHHHHHHHHHH-----HhCCcEEEeehHH
Confidence            655554333333333   7999999998875443 22333333332     1677888876654

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.25  E-value=1.3e-06  Score=68.37  Aligned_cols=54  Identities=22%  Similarity=0.277  Sum_probs=44.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEE-cCeEEEEEEcCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTY-QKYTLNIWDVGG   69 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g   69 (185)
                      .+.|++||-||+||||+||+|.|.+.-.++.|+|-+.+.-.+ -.-.+.+.|+||
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPG  368 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSPSVCLCDCPG  368 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCCCceecCCCC
Confidence            589999999999999999999999998888888865554222 234688999999

>PRK00098 GTPase RsgA; Reviewed

Probab=98.23  E-value=3.3e-06  Score=63.55  Aligned_cols=55  Identities=11%  Similarity=0.077  Sum_probs=35.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcccccCc---------ceEEEEEEEcCeEEEEEEcCCchh
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVISPTL---------GFNIKTVTYQKYTLNIWDVGGQRT   72 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~---------~~~~~~~~~~~~~~~~~D~~g~~~   72 (185)
                      -.++++|++|+|||||+|+|.+..........         ......+...+ ...++||||...
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~-~~~~~DtpG~~~  228 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG-GGLLIDTPGFSS  228 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC-CcEEEECCCcCc
Confidence            46899999999999999999886553222111         01122222322 247899999764

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.14  E-value=5.5e-06  Score=58.52  Aligned_cols=67  Identities=15%  Similarity=0.158  Sum_probs=36.8

Q ss_pred             CeEEEEEEcCCchhhHH----HHHhhh--cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           59 KYTLNIWDVGGQRTIRS----YWRNYF--EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        59 ~~~~~~~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      +..+.++||||......    ....++  ...+-+++|.+++....  ... ....+....   + +-=+++||.|....
T Consensus        83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~-~~~~~~~~~---~-~~~lIlTKlDet~~  155 (196)
T PF00448_consen   83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLE-QALAFYEAF---G-IDGLILTKLDETAR  155 (196)
T ss_dssp             TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHH-HHHHHHHHS---S-TCEEEEESTTSSST
T ss_pred             CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHH-HHHHHhhcc---c-CceEEEEeecCCCC
Confidence            36799999999443221    111111  25789999999986432  222 222222221   1 23566999997654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.12  E-value=3.9e-06  Score=62.22  Aligned_cols=56  Identities=23%  Similarity=0.262  Sum_probs=34.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCc---ccccCcc------eEEEEEEEcCeEEEEEEcCCchhhH
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTS---VISPTLG------FNIKTVTYQKYTLNIWDVGGQRTIR   74 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~------~~~~~~~~~~~~~~~~D~~g~~~~~   74 (185)
                      ..+++|.+|+|||||+|+|.+....   ..+...+      ....-+... ..=.++||||..++.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~-~gG~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLP-GGGWIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcC-CCCEEEeCCCCCccC
Confidence            6789999999999999999874432   2222221      111222221 123689999977654

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=98.12  E-value=3.2e-05  Score=57.57  Aligned_cols=111  Identities=11%  Similarity=0.097  Sum_probs=67.2

Q ss_pred             HHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCC------------------
Q 029920            8 RKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGG------------------   69 (185)
Q Consensus         8 ~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g------------------   69 (185)
                      -...+..+..+++++|++|.|||+++++|...+.+......         ...++..+.+|.                  
T Consensus        53 l~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~---------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP  123 (302)
T PF05621_consen   53 LEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDA---------ERIPVVYVQMPPEPDERRFYSAILEALGAP  123 (302)
T ss_pred             HhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCC---------ccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence            34455677789999999999999999999987754332111         112455555544                  


Q ss_pred             ------chhhHHHHHhhhcCCCEEEEEEeCCC---cccHHHHHHHHHHHHhccccCCCeEEEEeecC
Q 029920           70 ------QRTIRSYWRNYFEQTDGLVWVVDSSD---LRRLDDCKMELDNLLKEERLSGASLLILANKQ  127 (185)
Q Consensus        70 ------~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~  127 (185)
                            ...........++...+-++++|--+   ..+.......+..+....+.-++|++.++++-
T Consensus       124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~  190 (302)
T PF05621_consen  124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE  190 (302)
T ss_pred             cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence                  11223334456788889999999443   12333333332322222334479999998753

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.10  E-value=7.1e-06  Score=56.78  Aligned_cols=67  Identities=16%  Similarity=0.178  Sum_probs=38.9

Q ss_pred             CeEEEEEEcCCchhhH----HHHHhhh--cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           59 KYTLNIWDVGGQRTIR----SYWRNYF--EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        59 ~~~~~~~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      +..+.++|+||.....    .......  ...+.+++|+|.....+   ..+....+.+..   + ..-+++||.|....
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~---~-~~~viltk~D~~~~  154 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL---G-ITGVILTKLDGDAR  154 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence            4568999999964221    1111111  34899999999875432   223333333221   2 35677799997554

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.10  E-value=5.7e-06  Score=55.82  Aligned_cols=58  Identities=16%  Similarity=0.125  Sum_probs=34.3

Q ss_pred             CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCC
Q 029920           59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQD  128 (185)
Q Consensus        59 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D  128 (185)
                      ++.+.++||+|....   ...++..+|.++++....-.+.+.-..  ... +      ..-=++++||+|
T Consensus        91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k--~~~-~------~~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIK--AGI-M------EIADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhh--hhH-h------hhcCEEEEeCCC
Confidence            468999999886532   234678899888887654211111111  111 1      233578899987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=98.08  E-value=3.5e-06  Score=66.14  Aligned_cols=128  Identities=20%  Similarity=0.225  Sum_probs=82.7

Q ss_pred             hhccCceeEEEEEcCCCCChHHHHHHHhCCCCccc---------------ccCcceEEEEE-------------------
Q 029920           10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVI---------------SPTLGFNIKTV-------------------   55 (185)
Q Consensus        10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~---------------~~t~~~~~~~~-------------------   55 (185)
                      +.+..+..++.|+.+..-|||||-.+|..+.-...               ....+++.+..                   
T Consensus        13 M~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~   92 (842)
T KOG0469|consen   13 MDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQE   92 (842)
T ss_pred             hccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCC
Confidence            33455566799999999999999998854322110               11222232221                   


Q ss_pred             -EEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC---C
Q 029920           56 -TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN---G  131 (185)
Q Consensus        56 -~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~---~  131 (185)
                       +.+++-++++|.||+-.|.+.....++-.|+.++|+|+.+.--.+.. ..+++.+..    .+.-+++.||.|..   -
T Consensus        93 ~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~E----RIkPvlv~NK~DRAlLEL  167 (842)
T KOG0469|consen   93 GDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAE----RIKPVLVMNKMDRALLEL  167 (842)
T ss_pred             CCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHHh----hccceEEeehhhHHHHhh
Confidence             11347899999999999999999999999999999999875333321 122333232    35567889999942   2


Q ss_pred             CCCHHHHHHhc
Q 029920          132 ALTPTEIAKVL  142 (185)
Q Consensus       132 ~~~~~~~~~~~  142 (185)
                      ....+++.+.+
T Consensus       168 q~~~EeLyqtf  178 (842)
T KOG0469|consen  168 QLSQEELYQTF  178 (842)
T ss_pred             cCCHHHHHHHH
Confidence            33455555444

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=6.3e-05  Score=65.36  Aligned_cols=112  Identities=20%  Similarity=0.321  Sum_probs=63.1

Q ss_pred             EEEEcCCCCChHHHHHHHhCCCCccccc-----CcceEEEEEEE-cCeEEEEEEcCC----c----hhhHHHHHhhh---
Q 029920           19 ILMVGLDNSGKTTIVLKINGEDTSVISP-----TLGFNIKTVTY-QKYTLNIWDVGG----Q----RTIRSYWRNYF---   81 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~~~D~~g----~----~~~~~~~~~~~---   81 (185)
                      -+|+|++|+||||++.. .+..++....     ..+.....+++ -.-.-.++||.|    +    +.-...|..++   
T Consensus       128 y~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL  206 (1188)
T COG3523         128 YMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL  206 (1188)
T ss_pred             eEEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence            57889999999998764 2333322111     11111111112 224678899988    2    22334555442   


Q ss_pred             ------cCCCEEEEEEeCCCcc----cHH-H----HHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           82 ------EQTDGLVWVVDSSDLR----RLD-D----CKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        82 ------~~~d~~i~v~d~~~~~----s~~-~----~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                            +..+++|+++|+.+--    ... .    +..-++++... -....|+.+++||.|+..-
T Consensus       207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L~~~~PVYl~lTk~Dll~G  271 (1188)
T COG3523         207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-LHARLPVYLVLTKADLLPG  271 (1188)
T ss_pred             HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hccCCceEEEEeccccccc
Confidence                  4579999999977521    111 1    22223333322 2336899999999998763

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.04  E-value=6.4e-06  Score=64.41  Aligned_cols=110  Identities=12%  Similarity=0.091  Sum_probs=60.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCC-----cc----ccc---------------CcceEEEEE-----------EEcCe
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDT-----SV----ISP---------------TLGFNIKTV-----------TYQKY   60 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~-----~~----~~~---------------t~~~~~~~~-----------~~~~~   60 (185)
                      .-.++++|+.|+||||++..|.+...     ..    ...               ..++.....           ...+.
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~  270 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK  270 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence            34799999999999999998765311     00    000               111111111           12346


Q ss_pred             EEEEEEcCCchhhHH----HHHhhh--cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           61 TLNIWDVGGQRTIRS----YWRNYF--EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        61 ~~~~~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      ...++||+|......    ......  ...+-.++|+|++..  .+.+.+.+..+-.     -..-=+++||.|....
T Consensus       271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~-----~~~~~~I~TKlDEt~~  341 (420)
T PRK14721        271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQG-----HGIHGCIITKVDEAAS  341 (420)
T ss_pred             CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeeeCCCC
Confidence            789999999554322    111211  234577899999842  2222232222211     1234578999997654

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.03  E-value=1.3e-05  Score=64.11  Aligned_cols=110  Identities=18%  Similarity=0.291  Sum_probs=59.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCC--------CCcccc-c---------------CcceEEEEE-----------EEcCe
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGE--------DTSVIS-P---------------TLGFNIKTV-----------TYQKY   60 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~--------~~~~~~-~---------------t~~~~~~~~-----------~~~~~   60 (185)
                      .-.++++|+.|+||||++..|...        ...... .               ..++.....           ...++
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~  429 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY  429 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence            357899999999999999887531        111000 0               111111111           11347


Q ss_pred             EEEEEEcCCchhhHHHHHh---hh--cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           61 TLNIWDVGGQRTIRSYWRN---YF--EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        61 ~~~~~D~~g~~~~~~~~~~---~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      .+.++||+|..........   .+  ......++|++.+.  +...+...+..+..     ..+.-+|+||.|....
T Consensus       430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~~  499 (559)
T PRK12727        430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETGR  499 (559)
T ss_pred             CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCccc
Confidence            8999999995432211110   11  11235677777764  23333333333322     2457799999998554

>KOG2484 consensus GTPase [General function prediction only]

Probab=98.02  E-value=2.1e-06  Score=65.40  Aligned_cols=56  Identities=16%  Similarity=0.340  Sum_probs=44.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEE--EEEcCeEEEEEEcCCc
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT--VTYQKYTLNIWDVGGQ   70 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~D~~g~   70 (185)
                      +..++++|+|-||+||||+||+|...+.-..+.+.|.+..-  +. -+..+.++|.||.
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~-Ldk~i~llDsPgi  307 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVK-LDKKIRLLDSPGI  307 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhhee-ccCCceeccCCce
Confidence            66799999999999999999999988886666666654332  22 2358899999993

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.99  E-value=1.2e-05  Score=59.59  Aligned_cols=58  Identities=16%  Similarity=0.348  Sum_probs=41.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCC-----cccccCcceEEEE---EEE-cCeEEEEEEcCCc
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDT-----SVISPTLGFNIKT---VTY-QKYTLNIWDVGGQ   70 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~-----~~~~~t~~~~~~~---~~~-~~~~~~~~D~~g~   70 (185)
                      ....+++.|+|-||+|||||+|++...+.     ...++..|++...   +.+ +.-.+.++||||.
T Consensus       140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGi  206 (335)
T KOG2485|consen  140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGI  206 (335)
T ss_pred             cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCc
Confidence            45678999999999999999999865444     2344555555443   333 4457899999994

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.96  E-value=9.3e-05  Score=52.10  Aligned_cols=117  Identities=15%  Similarity=0.086  Sum_probs=61.0

Q ss_pred             eEEEEEEcCCchhhH-------HHHHhhh--cCCCEEEEEEeCCC-cccHHHHHHHHHHHHhccccCCCeEEEEeecCCC
Q 029920           60 YTLNIWDVGGQRTIR-------SYWRNYF--EQTDGLVWVVDSSD-LRRLDDCKMELDNLLKEERLSGASLLILANKQDI  129 (185)
Q Consensus        60 ~~~~~~D~~g~~~~~-------~~~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~  129 (185)
                      -.+.+.|.|||-+..       +..++.-  .---.++|++|..= .++.+.....+..+... ..-..|-|=|++|.|+
T Consensus        98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAM-i~lE~P~INvlsKMDL  176 (273)
T KOG1534|consen   98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAM-ISLEVPHINVLSKMDL  176 (273)
T ss_pred             CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHH-HHhcCcchhhhhHHHH
Confidence            468899999965532       2222211  11234555666432 12222222222222111 1226899999999998


Q ss_pred             CCCCCHHHHHHhcCcc--------------------------cccCccceEEEeecccCCCCHHHHHHHHHHHH
Q 029920          130 NGALTPTEIAKVLNLE--------------------------AMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       130 ~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (185)
                      ......+++...+...                          ......-+.|++....+.+.++.++..|-..+
T Consensus       177 lk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai  250 (273)
T KOG1534|consen  177 LKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI  250 (273)
T ss_pred             hhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence            7664444444333211                          11122345677777777777777777766555

>PRK13695 putative NTPase; Provisional

Probab=97.94  E-value=0.00029  Score=48.78  Aligned_cols=21  Identities=52%  Similarity=0.699  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHh
Q 029920           17 MRILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~   37 (185)
                      .+|++.|++|+|||||+..+.
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~   21 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIA   21 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999864

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.94  E-value=2.9e-05  Score=59.85  Aligned_cols=111  Identities=15%  Similarity=0.180  Sum_probs=60.6

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCC-cccccC-----------------------cceEEEEE-----------EEcC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDT-SVISPT-----------------------LGFNIKTV-----------TYQK   59 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~-~~~~~t-----------------------~~~~~~~~-----------~~~~   59 (185)
                      +.-.|+++||.|+||||-+-.|..... ......                       .+......           ...+
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~  281 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD  281 (407)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence            356789999999999999877754333 111111                       11111111           1134


Q ss_pred             eEEEEEEcCCchhhH----HHHHhhhcCC--CEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           60 YTLNIWDVGGQRTIR----SYWRNYFEQT--DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        60 ~~~~~~D~~g~~~~~----~~~~~~~~~~--d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      ..+.++||.|.....    .....++..+  .-+-+|++++..  .+.+..-+..+...     ..--+++||.|-...
T Consensus       282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~-----~i~~~I~TKlDET~s  353 (407)
T COG1419         282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF-----PIDGLIFTKLDETTS  353 (407)
T ss_pred             CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC-----CcceeEEEcccccCc
Confidence            689999999954322    2333344333  445567777752  23333333333211     123478899997554

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.92  E-value=7.5e-05  Score=57.87  Aligned_cols=110  Identities=20%  Similarity=0.171  Sum_probs=60.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCC------CCccc----------------ccCcceEEEEEE--------------EcC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGE------DTSVI----------------SPTLGFNIKTVT--------------YQK   59 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~------~~~~~----------------~~t~~~~~~~~~--------------~~~   59 (185)
                      +..|+++|+.||||||++..|...      .....                ....++......              ..+
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~  320 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR  320 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence            467999999999999999888531      11000                001111111110              013


Q ss_pred             eEEEEEEcCCchhhHH----HHHhhh--cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           60 YTLNIWDVGGQRTIRS----YWRNYF--EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        60 ~~~~~~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      ..+.++||+|......    .....+  ...+.+++|+|++..  ...+...+..+-.     -..-=+++||.|....
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~-----~~idglI~TKLDET~k  392 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETAS  392 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC-----CCCCEEEEEcccCCCC
Confidence            5899999999533211    122222  245788999998642  1222232233211     1235578999997664

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.92  E-value=1.8e-05  Score=52.01  Aligned_cols=24  Identities=25%  Similarity=0.400  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGED   40 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~   40 (185)
                      --+.|.|++|+|||++++.+....
T Consensus         5 ~~~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    5 RILVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             --EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             cccEEEcCCCCCHHHHHHHHHHHh
Confidence            347899999999999999987653

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.90  E-value=0.00014  Score=50.60  Aligned_cols=85  Identities=16%  Similarity=0.110  Sum_probs=46.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEE----EEcC-CchhhHHHHHhhhcCCCEEEE--
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNI----WDVG-GQRTIRSYWRNYFEQTDGLVW--   89 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~----~D~~-g~~~~~~~~~~~~~~~d~~i~--   89 (185)
                      =.++++|+.|+|||||++.+.+...+..    +.    +.+++..+..    .+.. |+...-.........++++++  
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~----G~----i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDE   97 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQLIPNG----DN----DEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDE   97 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCCCC----cE----EEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence            3689999999999999999998754321    11    1111111111    1133 344444555666677777666  


Q ss_pred             EEeCCCcccHHHHHHHHHHH
Q 029920           90 VVDSSDLRRLDDCKMELDNL  109 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~  109 (185)
                      -...-|+.+-..+..++..+
T Consensus        98 Pts~LD~~~~~~l~~~l~~~  117 (177)
T cd03222          98 PSAYLDIEQRLNAARAIRRL  117 (177)
T ss_pred             CcccCCHHHHHHHHHHHHHH
Confidence            11123444444444555444

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.90  E-value=6.6e-05  Score=41.49  Aligned_cols=44  Identities=14%  Similarity=0.285  Sum_probs=27.6

Q ss_pred             CCCEEEEEEeCCC--cccHHHHHHHHHHHHhccccCCCeEEEEeecCC
Q 029920           83 QTDGLVWVVDSSD--LRRLDDCKMELDNLLKEERLSGASLLILANKQD  128 (185)
Q Consensus        83 ~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D  128 (185)
                      -.++++|++|.+.  ..+.+.....+.++....  .++|+++|+||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence            3589999999996  456666666666665433  3899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.90  E-value=0.0003  Score=53.42  Aligned_cols=92  Identities=17%  Similarity=0.176  Sum_probs=50.8

Q ss_pred             eEEEEEEcCCchhhHHHHHhhhc--------CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC
Q 029920           60 YTLNIWDVGGQRTIRSYWRNYFE--------QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING  131 (185)
Q Consensus        60 ~~~~~~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  131 (185)
                      ....++.|.|..........++.        ..|.++-|+|+.+-   .........+....-  ..-=++++||+|+.+
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~---~~~~~~~~~~~~~Qi--a~AD~ivlNK~Dlv~  159 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHF---LEGLDAIAELAEDQL--AFADVIVLNKTDLVD  159 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHh---hhhHHHHHHHHHHHH--HhCcEEEEecccCCC
Confidence            56677888886554444333332        23778999998762   222221222222111  123578999999988


Q ss_pred             CCCHHHHHHhcCcccccCccceEEEeecc
Q 029920          132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSA  160 (185)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (185)
                      +...+.+...+....    +..+++.+|.
T Consensus       160 ~~~l~~l~~~l~~ln----p~A~i~~~~~  184 (323)
T COG0523         160 AEELEALEARLRKLN----PRARIIETSY  184 (323)
T ss_pred             HHHHHHHHHHHHHhC----CCCeEEEccc
Confidence            764444444333211    5566777776

>PRK04195 replication factor C large subunit; Provisional

Probab=97.85  E-value=0.00026  Score=56.93  Aligned_cols=35  Identities=20%  Similarity=0.310  Sum_probs=26.4

Q ss_pred             HHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920            5 SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus         5 ~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .|+.........-.+++.|++|+||||+++.++..
T Consensus        28 ~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e   62 (482)
T PRK04195         28 EWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND   62 (482)
T ss_pred             HHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            44544443333567999999999999999999775

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.84  E-value=6.8e-05  Score=59.19  Aligned_cols=111  Identities=22%  Similarity=0.285  Sum_probs=59.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhC----C--CCc-----cccc-----------CcceEEEEE---------------EE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKING----E--DTS-----VISP-----------TLGFNIKTV---------------TY   57 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~----~--~~~-----~~~~-----------t~~~~~~~~---------------~~   57 (185)
                      ++..|+++|++|+||||++..|..    .  ...     .+.+           ..+......               ..
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~  173 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF  173 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence            466799999999999999877632    1  110     0000           011111100               00


Q ss_pred             cCeEEEEEEcCCchhhHHH----HH--hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC
Q 029920           58 QKYTLNIWDVGGQRTIRSY----WR--NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING  131 (185)
Q Consensus        58 ~~~~~~~~D~~g~~~~~~~----~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  131 (185)
                      ....+.++||||.......    ..  .....+|.+++|+|++...   ........+....    ...-+|+||.|...
T Consensus       174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l----~i~gvIlTKlD~~a  246 (437)
T PRK00771        174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV----GIGGIIITKLDGTA  246 (437)
T ss_pred             hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC----CCCEEEEecccCCC
Confidence            1247899999995443211    11  1134679999999987642   2222222221111    12457789999754


Q ss_pred             C
Q 029920          132 A  132 (185)
Q Consensus       132 ~  132 (185)
                      .
T Consensus       247 ~  247 (437)
T PRK00771        247 K  247 (437)
T ss_pred             c
Confidence            3

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.83  E-value=7.1e-05  Score=59.63  Aligned_cols=22  Identities=27%  Similarity=0.329  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      --++++|+.|+||||++..|.+
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~  278 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAA  278 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHH
Confidence            3589999999999999988864

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.82  E-value=0.00018  Score=44.28  Aligned_cols=97  Identities=13%  Similarity=0.094  Sum_probs=54.8

Q ss_pred             EEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHH-HHhhhcCCCEEEEEEeCCCcc
Q 029920           19 ILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSY-WRNYFEQTDGLVWVVDSSDLR   97 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-~~~~~~~~d~~i~v~d~~~~~   97 (185)
                      +++.|.+|+||||+...+...--.     .+.....++    .+.++|+++....... .......+|.++++++.... 
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~-   71 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL-   71 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh-
Confidence            578899999999998877543211     111111111    8899999986543321 13445678999999987643 


Q ss_pred             cHHHHHHHHHHHHhccccCCCeEEEEee
Q 029920           98 RLDDCKMELDNLLKEERLSGASLLILAN  125 (185)
Q Consensus        98 s~~~~~~~~~~~~~~~~~~~~~~ivv~n  125 (185)
                      +....................+..+++|
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~vv~N   99 (99)
T cd01983          72 AVLGARRLTEVVLELAIEGLRPVGVVVN   99 (99)
T ss_pred             hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence            3333333322222222223455555554

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.82  E-value=7.9e-06  Score=62.42  Aligned_cols=87  Identities=17%  Similarity=0.216  Sum_probs=55.3

Q ss_pred             HHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEE-EEEEcCeEEEEEEcCCchhh--HHHHHhhhcCC
Q 029920            8 RKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIK-TVTYQKYTLNIWDVGGQRTI--RSYWRNYFEQT   84 (185)
Q Consensus         8 ~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~g~~~~--~~~~~~~~~~~   84 (185)
                      ..+-..+..+-|+++|-||+||||+||+|..+..-...|..|.+.. .+..--..+-++|+||.--.  .......++  
T Consensus       299 ~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyps~dset~ivLk--  376 (572)
T KOG2423|consen  299 AKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYPSSDSETDIVLK--  376 (572)
T ss_pred             HhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhceeEecCCCccCCCCCchHHHHhh--
Confidence            3344477889999999999999999999999998777776663321 10001136778999994211  122222222  


Q ss_pred             CEEEEEEeCCCcc
Q 029920           85 DGLVWVVDSSDLR   97 (185)
Q Consensus        85 d~~i~v~d~~~~~   97 (185)
                       +++-|=.+.+|+
T Consensus       377 -GvVRVenv~~pe  388 (572)
T KOG2423|consen  377 -GVVRVENVKNPE  388 (572)
T ss_pred             -ceeeeeecCCHH
Confidence             445555566654

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.82  E-value=1.5e-05  Score=57.40  Aligned_cols=24  Identities=25%  Similarity=0.455  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      -|+++|++|||||||++.+.|-..
T Consensus        31 fvsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            479999999999999999987544

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.81  E-value=0.00011  Score=56.64  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=19.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHh
Q 029920           16 EMRILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~   37 (185)
                      .-.++++|+.||||||++..|.
T Consensus       206 ~~ii~lvGptGvGKTTt~akLA  227 (407)
T PRK12726        206 HRIISLIGQTGVGKTTTLVKLG  227 (407)
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4568999999999999988875

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.81  E-value=4e-05  Score=63.93  Aligned_cols=111  Identities=14%  Similarity=0.083  Sum_probs=60.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCccc---------cc---------------CcceEEEEE-----------EEcCeE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVI---------SP---------------TLGFNIKTV-----------TYQKYT   61 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~---------~~---------------t~~~~~~~~-----------~~~~~~   61 (185)
                      --++++|+.|+||||++..|.+......         ..               ..+......           ...+..
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D  265 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH  265 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence            3589999999999999988865321000         00               011111110           113467


Q ss_pred             EEEEEcCCchhh----HHHHHhh--hcCCCEEEEEEeCCC-cccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           62 LNIWDVGGQRTI----RSYWRNY--FEQTDGLVWVVDSSD-LRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        62 ~~~~D~~g~~~~----~~~~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      +.++||+|....    .......  ....+-.++|+|++. .+.+.++...+.....     -.+-=+|+||.|....
T Consensus       266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~-----~~i~glIlTKLDEt~~  338 (767)
T PRK14723        266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAG-----EDVDGCIITKLDEATH  338 (767)
T ss_pred             EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhccc-----CCCCEEEEeccCCCCC
Confidence            999999993221    1111111  234577899999985 3333333332222110     0234578999997654

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.81  E-value=7e-05  Score=51.67  Aligned_cols=53  Identities=15%  Similarity=0.203  Sum_probs=33.0

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchh
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRT   72 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~   72 (185)
                      ....-++|+|.+|||||||++++...-..     .+.....+......+.+ |.+|.+.
T Consensus         4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~~-----~g~~vg~Ik~~~~~~~~-d~~g~Ds   56 (173)
T PRK10751          4 TMIPLLAIAAWSGTGKTTLLKKLIPALCA-----RGIRPGLIKHTHHDMDV-DKPGKDS   56 (173)
T ss_pred             CCceEEEEECCCCChHHHHHHHHHHHHhh-----cCCeEEEEEEcCCCccc-CCCCcHH
Confidence            34557899999999999999998765211     12223344443333333 7777544

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.81  E-value=2e-05  Score=51.13  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .|+|.|++||||||+++.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999865

...

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.79  E-value=0.00058  Score=45.12  Aligned_cols=28  Identities=29%  Similarity=0.335  Sum_probs=23.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGED   40 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~   40 (185)
                      ......+.+.|++|+|||++++.+....
T Consensus        16 ~~~~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          16 LPPPKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3345679999999999999999987664

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK10867 signal recognition particle protein; Provisional

Probab=97.79  E-value=5e-05  Score=59.81  Aligned_cols=67  Identities=18%  Similarity=0.164  Sum_probs=36.7

Q ss_pred             CeEEEEEEcCCchhhH----HHHHhh--hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           59 KYTLNIWDVGGQRTIR----SYWRNY--FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        59 ~~~~~~~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      ++.+.++||||.....    ......  .-..+.+++|+|+...   +........+....    ...-+|+||.|....
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~----~i~giIlTKlD~~~r  255 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL----GLTGVILTKLDGDAR  255 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC----CCCEEEEeCccCccc
Confidence            3679999999943221    111111  1256888999998753   23333333332211    124567799996443

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.78  E-value=0.00023  Score=47.80  Aligned_cols=64  Identities=25%  Similarity=0.377  Sum_probs=37.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCe-EEEEE-EcC-CchhhHHHHHhhhcCCCEEEE
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY-TLNIW-DVG-GQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~-D~~-g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      .++++|+.|+|||||++.+.+...+..    +    .+.+++. .+.+. ... |+...-.+......+++++++
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~~~~~----G----~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illl   94 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGELEPDE----G----IVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLL   94 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCCCCc----e----EEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            578999999999999999998754321    1    1122211 11111 133 344444555666677776666

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.77  E-value=0.00038  Score=52.91  Aligned_cols=23  Identities=35%  Similarity=0.471  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .-.+|-|.-|||||||+|++...
T Consensus         5 pv~iltGFLGaGKTTll~~ll~~   27 (318)
T PRK11537          5 AVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_pred             CEEEEEECCCCCHHHHHHHHHhc
Confidence            44678899999999999998653

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.74  E-value=0.00022  Score=48.91  Aligned_cols=25  Identities=20%  Similarity=0.347  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCc
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTS   42 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~   42 (185)
                      .++++|+.|+|||||++.+.+...+
T Consensus        28 ~~~l~G~nGsGKSTLl~~i~G~~~~   52 (163)
T cd03216          28 VHALLGENGAGKSTLMKILSGLYKP   52 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            6889999999999999999987543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK08118 topology modulation protein; Reviewed

Probab=97.72  E-value=2.9e-05  Score=53.48  Aligned_cols=23  Identities=26%  Similarity=0.592  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .+|+|+|++|||||||...|...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999998754

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.72  E-value=7.8e-05  Score=58.21  Aligned_cols=110  Identities=20%  Similarity=0.202  Sum_probs=59.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCC-------Cc-----c-----------cccCcceEEEEE----------EEcCeEE
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGED-------TS-----V-----------ISPTLGFNIKTV----------TYQKYTL   62 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~-------~~-----~-----------~~~t~~~~~~~~----------~~~~~~~   62 (185)
                      ...++++|++||||||++..|....       ..     .           +....+......          .-++..+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence            3458899999999999998875321       10     0           000111111111          1135688


Q ss_pred             EEEEcCCchhhH----HHHHhhhc-----CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           63 NIWDVGGQRTIR----SYWRNYFE-----QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        63 ~~~D~~g~~~~~----~~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      .++||||.....    ..+..+++     ..+-.++|+|++...  +........+ ..    -.+-=+++||.|-...
T Consensus       303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f-~~----~~~~glIlTKLDEt~~  374 (432)
T PRK12724        303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY-ES----LNYRRILLTKLDEADF  374 (432)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh-cC----CCCCEEEEEcccCCCC
Confidence            999999954221    11222222     245688999988632  2222322222 21    1235688999997654

>TIGR00959 ffh signal recognition particle protein

Probab=97.71  E-value=4.4e-05  Score=60.10  Aligned_cols=67  Identities=16%  Similarity=0.137  Sum_probs=37.6

Q ss_pred             CeEEEEEEcCCchhhH----HHHHh--hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           59 KYTLNIWDVGGQRTIR----SYWRN--YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        59 ~~~~~~~D~~g~~~~~----~~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      ++.+.++||||.....    .....  ..-..|.+++|+|++..   +........+....    ...=+|+||.|....
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v----~i~giIlTKlD~~~~  254 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL----GLTGVVLTKLDGDAR  254 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC----CCCEEEEeCccCccc
Confidence            3579999999943221    11111  12357889999998753   23333333332221    124567899996443

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.70  E-value=2.2e-05  Score=56.03  Aligned_cols=69  Identities=16%  Similarity=0.122  Sum_probs=38.2

Q ss_pred             eEEEEEEcCCchhhH------HHHHhhhcCCCEEEEEEeCC------CcccHHHHH-HHHHHHHhccccCCCeEEEEeec
Q 029920           60 YTLNIWDVGGQRTIR------SYWRNYFEQTDGLVWVVDSS------DLRRLDDCK-MELDNLLKEERLSGASLLILANK  126 (185)
Q Consensus        60 ~~~~~~D~~g~~~~~------~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~-~~~~~~~~~~~~~~~~~ivv~nK  126 (185)
                      ..+.+.|.|||-++.      ......++.-+.-+.++.+.      +|..|-... ..+...+.    ...|=+=|+.|
T Consensus        97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~----melphVNvlSK  172 (290)
T KOG1533|consen   97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLH----MELPHVNVLSK  172 (290)
T ss_pred             CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHh----hcccchhhhhH
Confidence            578999999964431      22233344556555555533      454443322 11222222    25777888999


Q ss_pred             CCCCCC
Q 029920          127 QDINGA  132 (185)
Q Consensus       127 ~D~~~~  132 (185)
                      +|+...
T Consensus       173 ~Dl~~~  178 (290)
T KOG1533|consen  173 ADLLKK  178 (290)
T ss_pred             hHHHHh
Confidence            998654

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.70  E-value=5.7e-05  Score=59.58  Aligned_cols=67  Identities=12%  Similarity=0.108  Sum_probs=37.1

Q ss_pred             CeEEEEEEcCCchhhH----HHHHhhhc---CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC
Q 029920           59 KYTLNIWDVGGQRTIR----SYWRNYFE---QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING  131 (185)
Q Consensus        59 ~~~~~~~D~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  131 (185)
                      +..+.++||||.....    .....++.   ...-..+|++++..  ...+.+.+..+ ..   -+ +--+++||.|...
T Consensus       299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f-~~---~~-~~~vI~TKlDet~  371 (424)
T PRK05703        299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHF-SR---LP-LDGLIFTKLDETS  371 (424)
T ss_pred             CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHh-CC---CC-CCEEEEecccccc
Confidence            4689999999954322    22233333   33567888888642  22222222222 11   11 2368899999855


Q ss_pred             C
Q 029920          132 A  132 (185)
Q Consensus       132 ~  132 (185)
                      .
T Consensus       372 ~  372 (424)
T PRK05703        372 S  372 (424)
T ss_pred             c
Confidence            4

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.70  E-value=3.2e-05  Score=51.60  Aligned_cols=21  Identities=29%  Similarity=0.555  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChHHHHHHHhCC
Q 029920           19 ILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~~   39 (185)
                      |+++|+|||||||+++.+...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999998743

...

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.67  E-value=0.00013  Score=56.83  Aligned_cols=110  Identities=16%  Similarity=0.219  Sum_probs=61.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCC----------CCc-----cc-----------ccCcceEEEEE-----------EEc
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGE----------DTS-----VI-----------SPTLGFNIKTV-----------TYQ   58 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~----------~~~-----~~-----------~~t~~~~~~~~-----------~~~   58 (185)
                      +..|+++|+.|+||||.+..|...          ...     .+           ....++.....           ...
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~  253 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK  253 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence            457999999999999998877531          110     00           00111111111           114


Q ss_pred             CeEEEEEEcCCchhhH----HHHHhhhcC---CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC
Q 029920           59 KYTLNIWDVGGQRTIR----SYWRNYFEQ---TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING  131 (185)
Q Consensus        59 ~~~~~~~D~~g~~~~~----~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  131 (185)
                      +..+.++||+|.....    ......+..   .+-.++|+|++..  ...+...+..+..     -.+-=+++||.|...
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~-----~~~~~~I~TKlDet~  326 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP-----FSYKTVIFTKLDETT  326 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeccCCC
Confidence            5789999999953321    122223332   2368899999864  2333333333311     124568899999765


Q ss_pred             C
Q 029920          132 A  132 (185)
Q Consensus       132 ~  132 (185)
                      .
T Consensus       327 ~  327 (388)
T PRK12723        327 C  327 (388)
T ss_pred             c
Confidence            4

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.67  E-value=9.8e-05  Score=51.11  Aligned_cols=55  Identities=18%  Similarity=0.152  Sum_probs=33.0

Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhc
Q 029920           85 DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVL  142 (185)
Q Consensus        85 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~  142 (185)
                      |++++|+|+.++.+-..  ..+...+. ....+.|+++|+||+|+.+.....++...+
T Consensus         1 DvVl~VvDar~p~~~~~--~~i~~~~~-l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~   55 (172)
T cd04178           1 DVILEVLDARDPLGCRC--PQVEEAVL-QAGGNKKLVLVLNKIDLVPKENVEKWLKYL   55 (172)
T ss_pred             CEEEEEEECCCCCCCCC--HHHHHHHH-hccCCCCEEEEEehhhcCCHHHHHHHHHHH
Confidence            78999999988633221  12222211 122368999999999997654444444433

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PRK07261 topology modulation protein; Provisional

Probab=97.67  E-value=3.9e-05  Score=53.06  Aligned_cols=22  Identities=32%  Similarity=0.631  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      +|+|+|++|||||||+..|...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999998654

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.66  E-value=4e-05  Score=53.28  Aligned_cols=23  Identities=39%  Similarity=0.679  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .+|+|+|+|||||||+...|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999876

>PF05729 NACHT: NACHT domain

Probab=97.63  E-value=0.00049  Score=46.80  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      -+.|.|++|+||||++..++..
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~   23 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQ   23 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHH
Confidence            3789999999999999987653

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.61  E-value=0.00026  Score=54.28  Aligned_cols=91  Identities=22%  Similarity=0.305  Sum_probs=51.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhC--------------CCCcc-c---------ccCcceEEE---------------
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKING--------------EDTSV-I---------SPTLGFNIK---------------   53 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~--------------~~~~~-~---------~~t~~~~~~---------------   53 (185)
                      ..++--|.++|..|+||||.+-.|..              ..+.. .         ....++.-.               
T Consensus        98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~  177 (483)
T KOG0780|consen   98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVD  177 (483)
T ss_pred             cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHH
Confidence            34445689999999999999887732              11110 0         001111111               


Q ss_pred             EEEEcCeEEEEEEcCCchhhHH-HH---Hhh--hcCCCEEEEEEeCCCcccHHHHH
Q 029920           54 TVTYQKYTLNIWDVGGQRTIRS-YW---RNY--FEQTDGLVWVVDSSDLRRLDDCK  103 (185)
Q Consensus        54 ~~~~~~~~~~~~D~~g~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~  103 (185)
                      .+.-+++.+.++||.|...... +.   ...  .-..|-+|+|.|++-..+-....
T Consensus       178 ~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa  233 (483)
T KOG0780|consen  178 RFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQA  233 (483)
T ss_pred             HHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHH
Confidence            1223568999999999433221 11   111  23579999999998654433333

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=97.61  E-value=0.00055  Score=49.17  Aligned_cols=26  Identities=23%  Similarity=0.336  Sum_probs=22.0

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ..+..+++.|+||+||||+++.+.+.
T Consensus        10 ~~~~~~liyG~~G~GKtt~a~~~~~~   35 (220)
T TIGR01618        10 RIPNMYLIYGKPGTGKTSTIKYLPGK   35 (220)
T ss_pred             CCCcEEEEECCCCCCHHHHHHhcCCC
Confidence            33567999999999999999998654

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.61  E-value=6.2e-05  Score=49.86  Aligned_cols=24  Identities=29%  Similarity=0.457  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++|+|+.|||||||++.+++...
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             EEEEEccCCCccccceeeeccccc
Confidence            579999999999999999998744

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.59  E-value=0.00033  Score=54.49  Aligned_cols=97  Identities=25%  Similarity=0.265  Sum_probs=56.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhC------CCC-----ccccc-----------CcceEEEEE---------------
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKING------EDT-----SVISP-----------TLGFNIKTV---------------   55 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~------~~~-----~~~~~-----------t~~~~~~~~---------------   55 (185)
                      ...+-.|.++|..|+||||.+-.|..      .+.     ..+.|           ..++.....               
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~  176 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE  176 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence            34567799999999999999776632      111     01111           111111110               


Q ss_pred             --EEcCeEEEEEEcCCchhhHHHH------HhhhcCCCEEEEEEeCCCcccHHHHHHHHHHH
Q 029920           56 --TYQKYTLNIWDVGGQRTIRSYW------RNYFEQTDGLVWVVDSSDLRRLDDCKMELDNL  109 (185)
Q Consensus        56 --~~~~~~~~~~D~~g~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~  109 (185)
                        ....+.+.++||+|........      ..-.-++|-+++|+|+.-.+.-.+..+.|.+.
T Consensus       177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~  238 (451)
T COG0541         177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEA  238 (451)
T ss_pred             HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhh
Confidence              1133689999999943322111      11234689999999998765555555555544

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.59  E-value=6.8e-05  Score=43.67  Aligned_cols=21  Identities=33%  Similarity=0.510  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChHHHHHHHhCC
Q 029920           19 ILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~~   39 (185)
                      |++.|++|+||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            688999999999999998865

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.59  E-value=7.3e-05  Score=42.31  Aligned_cols=20  Identities=35%  Similarity=0.529  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 029920           18 RILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~   37 (185)
                      ..++.|+.|+||||++.++.
T Consensus        25 ~tli~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48899999999999998864

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.58  E-value=0.00076  Score=50.31  Aligned_cols=87  Identities=21%  Similarity=0.157  Sum_probs=57.1

Q ss_pred             cCCCEEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecc
Q 029920           82 EQTDGLVWVVDSSDLR-RLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSA  160 (185)
Q Consensus        82 ~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (185)
                      .+.|-.++++.+.+|+ +...+..++...    ...++..++++||+|+.+...... .+.+.   .....+.+++.+|+
T Consensus        78 ~n~d~~iiIvs~~~P~~~~~~ldR~Lv~a----e~~gi~pvIvlnK~DL~~~~~~~~-~~~~~---~y~~~gy~v~~~s~  149 (301)
T COG1162          78 ANNDQAIIVVSLVDPDFNTNLLDRYLVLA----EAGGIEPVIVLNKIDLLDDEEAAV-KELLR---EYEDIGYPVLFVSA  149 (301)
T ss_pred             cccceEEEEEeccCCCCCHHHHHHHHHHH----HHcCCcEEEEEEccccCcchHHHH-HHHHH---HHHhCCeeEEEecC
Confidence            4577888888888865 333333333333    334788888899999987655543 11111   11116778999999


Q ss_pred             cCCCCHHHHHHHHHHH
Q 029920          161 YTGEGLLEGFDWLVQD  176 (185)
Q Consensus       161 ~~~~~i~~l~~~l~~~  176 (185)
                      +++.+++++.+.+...
T Consensus       150 ~~~~~~~~l~~~l~~~  165 (301)
T COG1162         150 KNGDGLEELAELLAGK  165 (301)
T ss_pred             cCcccHHHHHHHhcCC
Confidence            9999999988876543

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.58  E-value=0.001  Score=44.29  Aligned_cols=101  Identities=17%  Similarity=0.244  Sum_probs=57.9

Q ss_pred             EEcCCCCChHHHHHHHhC----CCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCc
Q 029920           21 MVGLDNSGKTTIVLKING----EDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL   96 (185)
Q Consensus        21 v~G~~~~GKttli~~l~~----~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   96 (185)
                      .-|..|+||||+.-.+..    .......-........+   .+.+.++|+|+...  ......+..+|.++++.+.+. 
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~---~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~-   78 (139)
T cd02038           5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL---DYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEP-   78 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC---CCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCCh-
Confidence            346789999999655432    11110000000000000   17899999998543  333456889999999998863 


Q ss_pred             ccHHHHHHHHHHHHhccccCCCeEEEEeecCCC
Q 029920           97 RRLDDCKMELDNLLKEERLSGASLLILANKQDI  129 (185)
Q Consensus        97 ~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~  129 (185)
                      .++......+..+....  ...++.+++|+++.
T Consensus        79 ~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~  109 (139)
T cd02038          79 TSITDAYALIKKLAKQL--RVLNFRVVVNRAES  109 (139)
T ss_pred             hHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence            34444444444443321  24678899999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=97.58  E-value=0.0012  Score=51.79  Aligned_cols=93  Identities=19%  Similarity=0.263  Sum_probs=57.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCcccccC---c----c------------------eEEEEE---------------
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTSVISPT---L----G------------------FNIKTV---------------   55 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t---~----~------------------~~~~~~---------------   55 (185)
                      .-+|+++||.|+|||||+..|.|.-.+.....   .    +                  +-.+.+               
T Consensus       613 dSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fG  692 (807)
T KOG0066|consen  613 DSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFG  692 (807)
T ss_pred             cceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhh
Confidence            35899999999999999999987644322110   0    0                  000001               


Q ss_pred             -EEcCeEEEEEEcCC-chhhHHHHHhhhcCCCEEEEEEeCC--CcccHHHHHHHHHH
Q 029920           56 -TYQKYTLNIWDVGG-QRTIRSYWRNYFEQTDGLVWVVDSS--DLRRLDDCKMELDN  108 (185)
Q Consensus        56 -~~~~~~~~~~D~~g-~~~~~~~~~~~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~  108 (185)
                       ..+...+.+.|+.| +.........++...|++|+-=.-+  |.+|.+.+.+.+..
T Consensus       693 L~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIne  749 (807)
T KOG0066|consen  693 LASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINE  749 (807)
T ss_pred             hhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHh
Confidence             11236788889876 5556677788889999998843333  23455554444443

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.57  E-value=0.00026  Score=53.26  Aligned_cols=25  Identities=40%  Similarity=0.660  Sum_probs=21.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHh
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~   37 (185)
                      ..++.-++++|-.|+||||-|-.|+
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA  160 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLA  160 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHH
Confidence            3457889999999999999987774

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=97.56  E-value=0.00072  Score=46.78  Aligned_cols=24  Identities=29%  Similarity=0.382  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|+|||||++.+.+...
T Consensus        30 ~~~i~G~nGsGKStLl~~l~G~~~   53 (173)
T cd03246          30 SLAIIGPSGSGKSTLARLILGLLR   53 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHhccC
Confidence            579999999999999999998644

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.56  E-value=6.3e-05  Score=53.94  Aligned_cols=25  Identities=32%  Similarity=0.501  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCc
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTS   42 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~   42 (185)
                      -|+|+|++|||||||+|.+-+-..+
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld~p   57 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLDKP   57 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcccCC
Confidence            4799999999999999998765443

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.55  E-value=0.00054  Score=50.81  Aligned_cols=110  Identities=18%  Similarity=0.129  Sum_probs=61.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCC----C--c----------------ccccCcceEEEEE--------------EEcC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGED----T--S----------------VISPTLGFNIKTV--------------TYQK   59 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~----~--~----------------~~~~t~~~~~~~~--------------~~~~   59 (185)
                      .-+++++|++|+||||++..+....    .  .                .+....++.....              ...+
T Consensus        75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~  154 (270)
T PRK06731         75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR  154 (270)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence            3689999999999999988764321    1  0                0001112221111              0124


Q ss_pred             eEEEEEEcCCchhhH----HHHHhhh--cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           60 YTLNIWDVGGQRTIR----SYWRNYF--EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        60 ~~~~~~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      ..+.++||||.....    ......+  ...+-+++|+|++..  .+.+...+..+-.     -.+-=+++||.|....
T Consensus       155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~-----~~~~~~I~TKlDet~~  226 (270)
T PRK06731        155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETAS  226 (270)
T ss_pred             CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC-----CCCCEEEEEeecCCCC
Confidence            689999999954221    1112222  245778999998742  2233333333321     1335688999998664

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.54  E-value=5e-05  Score=52.02  Aligned_cols=22  Identities=32%  Similarity=0.573  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999755

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.53  E-value=0.0017  Score=44.09  Aligned_cols=24  Identities=33%  Similarity=0.476  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|+|||||++.+.+...
T Consensus        27 ~~~i~G~nGsGKStll~~l~g~~~   50 (157)
T cd00267          27 IVALVGPNGSGKSTLLRAIAGLLK   50 (157)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            678999999999999999998754

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.53  E-value=7.2e-05  Score=52.25  Aligned_cols=24  Identities=33%  Similarity=0.441  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      -|+++|++|||||||+|.+.|--.
T Consensus        33 ~vv~lGpSGcGKTTLLnl~AGf~~   56 (259)
T COG4525          33 LVVVLGPSGCGKTTLLNLIAGFVT   56 (259)
T ss_pred             EEEEEcCCCccHHHHHHHHhcCcC
Confidence            478999999999999999977443

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.52  E-value=7.1e-05  Score=56.86  Aligned_cols=23  Identities=26%  Similarity=0.576  Sum_probs=20.3

Q ss_pred             EEEEcCCCCChHHHHHHHhCCCC
Q 029920           19 ILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      ++++||+||||||+++.+.|-..
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe~   54 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLEE   54 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            68899999999999999988544

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=97.51  E-value=0.0011  Score=45.24  Aligned_cols=51  Identities=31%  Similarity=0.369  Sum_probs=30.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhH
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR   74 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~   74 (185)
                      -+.++|..|||||||++++...-.     ..+.....++..... --.|++|-..++
T Consensus         4 Il~ivG~k~SGKTTLie~lv~~L~-----~~G~rVa~iKH~hh~-~~~D~~GkDs~r   54 (161)
T COG1763           4 ILGIVGYKNSGKTTLIEKLVRKLK-----ARGYRVATVKHAHHD-FDLDKPGKDTYR   54 (161)
T ss_pred             EEEEEecCCCChhhHHHHHHHHHH-----hCCcEEEEEEecCCC-CCCCCCCCccch
Confidence            478999999999999999854311     112233334433333 335777765543

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.50  E-value=8e-05  Score=49.75  Aligned_cols=22  Identities=45%  Similarity=0.622  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .|+|+|+.|||||||+..|.+.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998654

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.50  E-value=0.00058  Score=53.70  Aligned_cols=127  Identities=18%  Similarity=0.202  Sum_probs=73.7

Q ss_pred             HHHHHhhccCceeEEEEEcCCCCChHHHHHHH----hCCCCcccc-------------------------c-Ccc-eEEE
Q 029920            5 SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKI----NGEDTSVIS-------------------------P-TLG-FNIK   53 (185)
Q Consensus         5 ~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l----~~~~~~~~~-------------------------~-t~~-~~~~   53 (185)
                      .-+.+.++.++++-|++||-.|+||||=+..+    ..+.++.+.                         + .++ +...
T Consensus       367 RdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekG  446 (587)
T KOG0781|consen  367 RDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKG  446 (587)
T ss_pred             HHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhh
Confidence            44566677889999999999999999977664    333332110                         0 000 0000


Q ss_pred             E-----------E---EEcCeEEEEEEcCCchhhHHHH----Hhh--hcCCCEEEEEEeCC-CcccHHHHHHHHHHHHhc
Q 029920           54 T-----------V---TYQKYTLNIWDVGGQRTIRSYW----RNY--FEQTDGLVWVVDSS-DLRRLDDCKMELDNLLKE  112 (185)
Q Consensus        54 ~-----------~---~~~~~~~~~~D~~g~~~~~~~~----~~~--~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~  112 (185)
                      .           +   +.+++.+.++||+|..--....    ..+  ....|.+++|-.+. ..++++.+... ...+..
T Consensus       447 Ygkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~f-n~al~~  525 (587)
T KOG0781|consen  447 YGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKF-NRALAD  525 (587)
T ss_pred             cCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHH-HHHHhc
Confidence            0           0   1245889999999943222111    111  35789999998765 34566665553 333333


Q ss_pred             cccCCCeEEEEeecCCCCCC
Q 029920          113 ERLSGASLLILANKQDINGA  132 (185)
Q Consensus       113 ~~~~~~~~ivv~nK~D~~~~  132 (185)
                      ...+..-=-++++|+|..++
T Consensus       526 ~~~~r~id~~~ltk~dtv~d  545 (587)
T KOG0781|consen  526 HSTPRLIDGILLTKFDTVDD  545 (587)
T ss_pred             CCCccccceEEEEeccchhh
Confidence            23222223478899997654

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.49  E-value=9.5e-05  Score=48.41  Aligned_cols=21  Identities=33%  Similarity=0.449  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChHHHHHHHhCC
Q 029920           19 ILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~~   39 (185)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999998765

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.49  E-value=0.00012  Score=51.81  Aligned_cols=24  Identities=29%  Similarity=0.588  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++||+|||||||++.+.+-..
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE~   53 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLEE   53 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCcC
Confidence            578999999999999999877544

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.48  E-value=0.0013  Score=41.32  Aligned_cols=81  Identities=21%  Similarity=0.216  Sum_probs=47.6

Q ss_pred             EEEEcC-CCCChHHHHHHHhCCCCcccccCcceEEEEEEEc-CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCc
Q 029920           19 ILMVGL-DNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQ-KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL   96 (185)
Q Consensus        19 i~v~G~-~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   96 (185)
                      |++.|. .|+||||+...+...--.     .+...-.++.+ .+.+.++|+|+.....  ....+..+|.++++.+... 
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-----~~~~vl~~d~d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~~-   73 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-----RGKRVLLIDLDPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPSP-   73 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-----CCCcEEEEeCCCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCCH-
Confidence            567774 589999987665322111     00011111111 1678999999875433  2366778999999998753 


Q ss_pred             ccHHHHHHHHH
Q 029920           97 RRLDDCKMELD  107 (185)
Q Consensus        97 ~s~~~~~~~~~  107 (185)
                      .++......+.
T Consensus        74 ~s~~~~~~~~~   84 (104)
T cd02042          74 LDLDGLEKLLE   84 (104)
T ss_pred             HHHHHHHHHHH
Confidence            45555554443

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=97.46  E-value=0.00014  Score=49.58  Aligned_cols=52  Identities=27%  Similarity=0.388  Sum_probs=33.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhH
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR   74 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~   74 (185)
                      ..+.++|.+|||||||++++...-     ...+.....++.+...+.+ |++|....+
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l-----~~~g~~V~~iK~~~~~~~~-d~~g~Ds~~   53 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPAL-----SARGLRVAVIKHDHHDFDI-DTPGKDSYR   53 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH-----HHcCCcEEEEEecCCcccc-cCccchHHH
Confidence            358999999999999999998531     1223334445554444443 777754433

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.46  E-value=9.9e-05  Score=54.00  Aligned_cols=21  Identities=29%  Similarity=0.455  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      -++++||.|||||||++.+.+
T Consensus        30 i~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          30 ITGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            368899999999999999977

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.45  E-value=0.002  Score=52.21  Aligned_cols=35  Identities=26%  Similarity=0.313  Sum_probs=26.1

Q ss_pred             HHHHHhhccCcee-EEEEEcCCCCChHHHHHHHhCC
Q 029920            5 SIIRKIKKKEKEM-RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus         5 ~~~~~~~~~~~~~-~i~v~G~~~~GKttli~~l~~~   39 (185)
                      +|+.........- -+++-||+||||||.++.|+..
T Consensus        33 ~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~e   68 (519)
T PF03215_consen   33 SWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKE   68 (519)
T ss_pred             HHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHH
Confidence            6777765444333 4667899999999999998764

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=97.45  E-value=0.0022  Score=50.21  Aligned_cols=34  Identities=29%  Similarity=0.450  Sum_probs=25.2

Q ss_pred             HHHHhhccCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920            6 IIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus         6 ~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .+...........+.|.|++|+|||++++.+...
T Consensus        45 ~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~   78 (394)
T PRK00411         45 ALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEE   78 (394)
T ss_pred             HHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3434333445567899999999999999998753

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.45  E-value=0.00012  Score=48.00  Aligned_cols=27  Identities=37%  Similarity=0.369  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcc
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSV   43 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~   43 (185)
                      -.++++|++|+||||++..+...-...
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            468999999999999999998765443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR00235 udk uridine kinase

Probab=97.44  E-value=0.00012  Score=52.14  Aligned_cols=27  Identities=41%  Similarity=0.394  Sum_probs=22.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ++...-|+|.|++|||||||++.|.+.
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            445577999999999999999998753

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.43  E-value=0.00012  Score=50.56  Aligned_cols=24  Identities=29%  Similarity=0.487  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      +++|+|++|+|||||+|.+.|-..
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAGF~~   50 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAGFET   50 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHhccC
Confidence            689999999999999999987544

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.43  E-value=9.7e-05  Score=49.15  Aligned_cols=26  Identities=23%  Similarity=0.456  Sum_probs=23.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      .+..++|+|.|.||+||||+..++..
T Consensus         4 ~r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    4 ERERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hhcCCCEEEeCCCCCCchhHHHHHHH
Confidence            35678999999999999999999874

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.42  E-value=0.00014  Score=51.02  Aligned_cols=23  Identities=22%  Similarity=0.471  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGED   40 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~   40 (185)
                      .++++|++|||||||++.|.+..
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            58899999999999999997754

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.41  E-value=0.00013  Score=52.02  Aligned_cols=26  Identities=38%  Similarity=0.423  Sum_probs=22.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .+...|+|.|++|||||||++.|.+.
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            46789999999999999999998764

>PRK14530 adenylate kinase; Provisional

Probab=97.41  E-value=0.00013  Score=52.29  Aligned_cols=22  Identities=32%  Similarity=0.453  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      .+|+|+|+|||||||+.+.|..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999864

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.41  E-value=0.00014  Score=47.40  Aligned_cols=21  Identities=38%  Similarity=0.517  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChHHHHHHHhCC
Q 029920           19 ILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~~   39 (185)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999998765

...

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.40  E-value=0.00015  Score=52.67  Aligned_cols=27  Identities=26%  Similarity=0.429  Sum_probs=23.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      -+.+++++|+|++|||||||+..+...
T Consensus        10 ~~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   10 LKDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             cCCCceEEEECCCCCCHHHHHHHHHHh
Confidence            456789999999999999998887654

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK01889 GTPase RsgA; Reviewed

Probab=97.40  E-value=0.00013  Score=56.33  Aligned_cols=25  Identities=28%  Similarity=0.515  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      -+++++|.+|+|||||+|.|.+...
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~~  220 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEEV  220 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhcc
Confidence            4789999999999999999987544

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.40  E-value=0.00013  Score=55.84  Aligned_cols=23  Identities=30%  Similarity=0.531  Sum_probs=20.5

Q ss_pred             EEEEcCCCCChHHHHHHHhCCCC
Q 029920           19 ILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      ++++||+||||||+++.+.|-..
T Consensus        34 ~~lLGPSGcGKTTlLR~IAGfe~   56 (352)
T COG3842          34 VTLLGPSGCGKTTLLRMIAGFEQ   56 (352)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            68999999999999999988554

>PRK03839 putative kinase; Provisional

Probab=97.40  E-value=0.00014  Score=50.56  Aligned_cols=22  Identities=27%  Similarity=0.342  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      +|+++|+|||||||+.+.|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998654

>PRK06217 hypothetical protein; Validated

Probab=97.38  E-value=0.00015  Score=50.61  Aligned_cols=23  Identities=35%  Similarity=0.491  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .+|+|+|.+||||||+..+|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998754

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.38  E-value=0.00015  Score=48.27  Aligned_cols=21  Identities=29%  Similarity=0.531  Sum_probs=19.3

Q ss_pred             EEEEcCCCCChHHHHHHHhCC
Q 029920           19 ILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~~   39 (185)
                      |+++|++|||||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999875

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK08233 hypothetical protein; Provisional

Probab=97.38  E-value=0.00018  Score=50.04  Aligned_cols=24  Identities=21%  Similarity=0.357  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .+-|+|.|.+||||||+.++|...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            467889999999999999999764

>PLN03025 replication factor C subunit; Provisional

Probab=97.37  E-value=0.006  Score=46.53  Aligned_cols=34  Identities=24%  Similarity=0.395  Sum_probs=25.6

Q ss_pred             HHHHhhccCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920            6 IIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus         6 ~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .++......+...+++.|++|+||||++..++..
T Consensus        24 ~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~   57 (319)
T PLN03025         24 RLQVIARDGNMPNLILSGPPGTGKTTSILALAHE   57 (319)
T ss_pred             HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            4444444555567999999999999999987654

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.37  E-value=0.00024  Score=50.69  Aligned_cols=27  Identities=15%  Similarity=0.402  Sum_probs=22.6

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      +....-|+|+|++|||||||++.|...
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            445566889999999999999999754

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.37  E-value=0.0014  Score=41.55  Aligned_cols=62  Identities=18%  Similarity=0.142  Sum_probs=40.0

Q ss_pred             EEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccC-CCeEEEEeec
Q 029920           61 TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLS-GASLLILANK  126 (185)
Q Consensus        61 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~~ivv~nK  126 (185)
                      .+.++|+|+.....  ....+..+|.++++.+.+. .+.......+..+.+. ..+ ...+.+|+|+
T Consensus        44 D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~-~s~~~~~~~~~~l~~~-~~~~~~~~~lVvNr  106 (106)
T cd03111          44 DYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDL-PSIRNAKRLLELLRVL-DYSLPAKIELVLNR  106 (106)
T ss_pred             CEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCCh-HHHHHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence            78999999875433  3446788999999997754 4555555554444332 222 3467777775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.36  E-value=0.00018  Score=51.68  Aligned_cols=24  Identities=33%  Similarity=0.512  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|...
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl~~   55 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGLDR   55 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCcC
Confidence            579999999999999999998743

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK06547 hypothetical protein; Provisional

Probab=97.35  E-value=0.00037  Score=48.25  Aligned_cols=27  Identities=26%  Similarity=0.345  Sum_probs=23.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ......|+|.|++||||||+.+.|...
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~   38 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAAR   38 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            677888999999999999999999754

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.35  E-value=0.00015  Score=50.48  Aligned_cols=22  Identities=27%  Similarity=0.369  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .++|+|++||||||+++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998664

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.35  E-value=0.00029  Score=53.68  Aligned_cols=93  Identities=22%  Similarity=0.190  Sum_probs=63.7

Q ss_pred             EcCCc-hhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCc
Q 029920           66 DVGGQ-RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNL  144 (185)
Q Consensus        66 D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~  144 (185)
                      +.||+ .+........+...|+++.|+|+.+|.+-..  ..+..+..     +.+.++|+||+|+.+....+.+...+..
T Consensus        16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~--~~l~~~v~-----~k~~i~vlNK~DL~~~~~~~~W~~~~~~   88 (322)
T COG1161          16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN--PELERIVK-----EKPKLLVLNKADLAPKEVTKKWKKYFKK   88 (322)
T ss_pred             CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC--ccHHHHHc-----cCCcEEEEehhhcCCHHHHHHHHHHHHh
Confidence            44665 4455677778899999999999999765443  12233322     4556999999999887677777766654


Q ss_pred             ccccCccceEEEeecccCCCCHHHHH
Q 029920          145 EAMDKTRHWKIVGCSAYTGEGLLEGF  170 (185)
Q Consensus       145 ~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (185)
                      +.     +...+.++++.+.+...+.
T Consensus        89 ~~-----~~~~~~v~~~~~~~~~~i~  109 (322)
T COG1161          89 EE-----GIKPIFVSAKSRQGGKKIR  109 (322)
T ss_pred             cC-----CCccEEEEeecccCccchH
Confidence            32     4456777777777665555

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.34  E-value=0.0015  Score=53.85  Aligned_cols=24  Identities=33%  Similarity=0.452  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGED   40 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~   40 (185)
                      =+++++|++|||||||++.+.+-.
T Consensus       377 ~~vaIvG~SGsGKSTL~~lL~g~~  400 (588)
T PRK11174        377 QRIALVGPSGAGKTSLLNALLGFL  400 (588)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999998865

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.33  E-value=0.00019  Score=45.44  Aligned_cols=21  Identities=29%  Similarity=0.512  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHh
Q 029920           17 MRILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~   37 (185)
                      -.++++|++|||||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            357999999999999999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.33  E-value=0.00018  Score=49.98  Aligned_cols=23  Identities=35%  Similarity=0.495  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGED   40 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~   40 (185)
                      .|+++|++|||||||++.|.+..
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            47899999999999999998754

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>KOG4181 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.33  E-value=0.005  Score=46.83  Aligned_cols=29  Identities=24%  Similarity=0.384  Sum_probs=23.8

Q ss_pred             cCceeE-EEEEcCCCCChHHHHHHHhCCCC
Q 029920           13 KEKEMR-ILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        13 ~~~~~~-i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      +...+. |.++|..|+|||||++.|.++..
T Consensus       184 ~~tdf~VIgvlG~QgsGKStllslLaans~  213 (491)
T KOG4181|consen  184 KTTDFTVIGVLGGQGSGKSTLLSLLAANSL  213 (491)
T ss_pred             cCCCeeEEEeecCCCccHHHHHHHHhccCh
Confidence            444454 78999999999999999988755

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.33  E-value=0.0002  Score=51.13  Aligned_cols=24  Identities=38%  Similarity=0.533  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|+|||||++.+.|...
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~~   52 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGLLG   52 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            579999999999999999998643

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.33  E-value=0.00017  Score=50.33  Aligned_cols=21  Identities=43%  Similarity=0.377  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHh
Q 029920           17 MRILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~   37 (185)
                      ..|+++|++||||||+++.+.
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIV   24 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999997

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.32  E-value=0.0002  Score=51.31  Aligned_cols=24  Identities=29%  Similarity=0.506  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|...
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl~~   54 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLILGIEK   54 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            589999999999999999998643

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.32  E-value=0.00015  Score=51.24  Aligned_cols=21  Identities=38%  Similarity=0.414  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChHHHHHHHhCC
Q 029920           19 ILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~~   39 (185)
                      |+|.|++|||||||++.|.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999998764

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.32  E-value=0.00021  Score=51.98  Aligned_cols=24  Identities=29%  Similarity=0.386  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|...
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~~   51 (235)
T cd03261          28 ILAIIGPSGSGKSTLLRLIVGLLR   51 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            579999999999999999998643

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.32  E-value=0.00018  Score=50.93  Aligned_cols=20  Identities=25%  Similarity=0.474  Sum_probs=17.5

Q ss_pred             EEEEcCCCCChHHHHHHHhC
Q 029920           19 ILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~   38 (185)
                      .+++||+|||||||++.|..
T Consensus        36 TAlIGPSGcGKST~LR~lNR   55 (253)
T COG1117          36 TALIGPSGCGKSTLLRCLNR   55 (253)
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            58999999999999988753

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.31  E-value=0.00028  Score=50.20  Aligned_cols=24  Identities=29%  Similarity=0.383  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|...
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~~   51 (205)
T cd03226          28 IIALTGKNGAGKTTLAKILAGLIK   51 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            689999999999999999998644

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.31  E-value=0.00022  Score=50.09  Aligned_cols=24  Identities=29%  Similarity=0.591  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|...
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~~~   43 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGLLR   43 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            579999999999999999998643

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.31  E-value=0.0002  Score=47.57  Aligned_cols=22  Identities=32%  Similarity=0.528  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .|+++|++|+|||+|++.++..
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~   22 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAAL   22 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999987654

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	185
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		3e-60
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		4e-60
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		5e-60
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		4e-58
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		1e-56
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		1e-38
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		2e-38
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		2e-38
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		3e-38
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		4e-38
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		1e-37
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		1e-37
3bh6_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		4e-37
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		8e-36
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		9e-36
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		9e-36
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		1e-35
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		6e-35
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		7e-35
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		7e-35
4dcn_A	166	Crystal Structure Analysis Of The Arfaptin2 Bar Dom		1e-34
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		3e-34
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		4e-34
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		4e-34
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		5e-34
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		5e-34
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		7e-34
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		1e-33
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		2e-33
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		3e-33
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		3e-33
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		3e-33
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		1e-32
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		1e-32
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		3e-32
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		4e-32
2x77_A	189	Crystal Structure Of Leishmania Major Adp Ribosylat		5e-32
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		4e-31
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		6e-31
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		1e-30
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		1e-30
1upt_A	171	Structure Of A Complex Of The Golgin-245 Grip Domai		8e-30
2h57_A	190	Crystal Structure Of Human Adp-Ribosylation Factor-		7e-25
4bas_A	199	Structure Of The Arl6 Bbs3 Small Gtpase From Trypan		8e-25
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		4e-23
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		2e-22
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		3e-22
2qtv_B	167	Structure Of Sec23-Sar1 Complexed With The Active F		3e-20
1m2o_B	190	Crystal Structure Of The Sec23-Sar1 Complex Length		3e-20
2gao_A	208	Crystal Structure Of Human Sar1a In Complex With Gd		5e-19
2fmx_A	195	An Open Conformation Of Switch I Revealed By Sar1-g		2e-18
1f6b_A	198	Crystal Structure Of Sar1-Gdp Complex Length = 198		2e-18
2fa9_A	189	The Crystal Structure Of Sar1[h79g]-gdp Provides In		4e-18
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		3e-05
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		3e-05
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		4e-05
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		5e-05
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		5e-05
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		6e-05
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		6e-05
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		9e-05
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		9e-05
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		1e-04
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		2e-04
1svk_A	353	Structure Of The K180p Mutant Of Gi Alpha Subunit B		2e-04
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		2e-04
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		2e-04
1shz_A	340	Crystal Structure Of The P115rhogef Rgrgs Domain In		3e-04
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		4e-04
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		5e-04
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		6e-04
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		6e-04
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		7e-04
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		7e-04
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		8e-04
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		8e-04
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		8e-04
4fmc_B	171	Espg-Rab1 Complex Length = 171		8e-04

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score =  227 bits (578), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 109/185 (58%), Positives = 139/185 (75%), Gaps = 1/185 (0%)
Query: 1   MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
           MGLL+              LM+GLDN+GKTTI+ K NGED   ISPTLGFNIKT+ ++ +
Sbjct: 1   MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF 60
Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
            LNIWDVGGQ+++RSYWRNYFE TDGL+WVVDS+D +R+ DC+ EL +LL EERL+GA+L
Sbjct: 61  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 120
Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           LI ANKQD+ GAL+   I +VL L+++ ++ HW I GCSA TGE LL G DWL+ DI+SR
Sbjct: 121 LIFANKQDLPGALSSNAIREVLELDSI-RSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 179
Query: 181 IYLLD 185
           I+  D
Sbjct: 180 IFTAD 184

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score =  226 bits (577), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 107/185 (57%), Positives = 139/185 (75%), Gaps = 1/185 (0%)
Query: 1   MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
           MGLL+              LM+GLDN+GKTTI+ K NGED   ISPTLGFNIKT+ ++ +
Sbjct: 3   MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGF 62
Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
            LNIWDVGGQ+++RSYWRNYFE TDGL+WVVDS+D +R+ DC+ EL +LL EERL+GA+L
Sbjct: 63  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 122
Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           LI ANKQD+ GAL+   I + L L+++ ++ HW+I GCSA TGE LL G DWL+ DI+SR
Sbjct: 123 LIFANKQDLPGALSXNAIQEALELDSI-RSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181
Query: 181 IYLLD 185
           ++  D
Sbjct: 182 VFTAD 186

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score =  226 bits (577), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 107/185 (57%), Positives = 139/185 (75%), Gaps = 1/185 (0%)
Query: 1   MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
           MGLL+              LM+GLDN+GKTTI+ K NGED   ISPTLGFNIKT+ ++ +
Sbjct: 3   MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGF 62
Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
            LNIWDVGGQ+++RSYWRNYFE TDGL+WVVDS+D +R+ DC+ EL +LL EERL+GA+L
Sbjct: 63  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 122
Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           LI ANKQD+ GAL+   I + L L+++ ++ HW+I GCSA TGE LL G DWL+ DI+SR
Sbjct: 123 LIFANKQDLPGALSCNAIQEALELDSI-RSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181
Query: 181 IYLLD 185
           ++  D
Sbjct: 182 VFTAD 186

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score =  220 bits (560), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 102/166 (61%), Positives = 133/166 (80%), Gaps = 1/166 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           LM+GLDN+GKTTI+ K NGED   ISPTLGFNIKT+ ++ + LNIWDVGG +++RSYWRN
Sbjct: 5   LMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGLKSLRSYWRN 64
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           YFE TDGL+WVVDS+D +R+ DC+ EL +LL EERL+GA+LLI ANKQD+ GAL+   I 
Sbjct: 65  YFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQ 124
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIYLLD 185
           + L L+++ ++ HW+I GCSA TGE LL G DWL+ DI+SR++  D
Sbjct: 125 EALELDSI-RSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRVFTAD 169

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score =  215 bits (547), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 99/161 (61%), Positives = 128/161 (79%), Gaps = 1/161 (0%)
Query: 25  DNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQT 84
           DN+GKTTI+ K NGED   ISPTLGFNIKT+ ++ + LNIWDVGGQ+++RSYWRNYFE T
Sbjct: 27  DNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFEST 86
Query: 85  DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNL 144
           DGL+WVVDS+D +R  DC+ EL +LL EERL+GA+LLI ANKQD+ GAL+   I + L L
Sbjct: 87  DGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALEL 146
Query: 145 EAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIYLLD 185
           +++ ++ HW+I GCSA TGE LL G DWL+ DI+SR++  D
Sbjct: 147 DSI-RSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRVFTAD 186

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score =  155 bits (391), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 80/161 (49%), Positives = 118/161 (73%), Gaps = 1/161 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           L++GLDN+GKTT++ ++  ED S I+PT GFNIK+V  Q + LN+WD+GGQR IR YWR+
Sbjct: 21  LLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRS 80
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           YFE TD L++V+DS+D +R ++   EL  LL+EE+LS   +LI ANKQD+  A   +EIA
Sbjct: 81  YFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIA 140
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           + LNL  + + R W+I  CSA TGEG+ +G +W+ +++ ++
Sbjct: 141 EGLNLHTI-RDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/161 (49%), Positives = 118/161 (73%), Gaps = 1/161 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           L++GLDN+GKTT++ ++  ED S I+PT GFNIK+V  Q + LN+WD+GGQR IR YWR+
Sbjct: 20  LLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRS 79
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           YFE TD L++V+DS+D +R ++   EL  LL+EE+LS   +LI ANKQD+  A   +EIA
Sbjct: 80  YFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIA 139
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           + LNL  + + R W+I  CSA TGEG+ +G +W+ +++ ++
Sbjct: 140 EGLNLHTI-RDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score =  154 bits (390), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/162 (48%), Positives = 108/162 (66%), Gaps = 3/162 (1%)
Query: 20  LMVGLDNSGKTTIVLKIN-GEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWR 78
           LMVGLD +GKTTI+ K+  GE  + I PT+GFN++TV Y+  +  +WDVGGQ  IR  WR
Sbjct: 24  LMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 82
Query: 79  NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEI 138
           +YF+ T GL++VVDS+D  R+ + + EL  +L E+ L  A LL+ ANKQD+  A+   EI
Sbjct: 83  HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI 142
Query: 139 AKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
              L L ++ + RHW I    A +GEGL EG DWL  +IAS+
Sbjct: 143 TDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 183

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score =  154 bits (388), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 73/155 (47%), Positives = 106/155 (68%), Gaps = 1/155 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           L++GLD +GKTTI+ ++   +     PT+GFN++T++Y+   LN+WD+GGQ +IR YWR 
Sbjct: 22  LILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRC 81
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           Y+  T  +++VVDS+D  R+     EL  +L+EE L  A+LL+ ANKQD  GAL+ +E++
Sbjct: 82  YYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVS 141
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLV 174
           K LNL  + K R W IV  SA  GEG+ EG DWL+
Sbjct: 142 KELNLVEL-KDRSWSIVASSAIKGEGITEGLDWLI 175

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score =  153 bits (387), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 80/158 (50%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           L++GLDN+GKTT++ ++  ED S I+PT GFNIK+V  Q + LN+WD+GGQR IR YWR+
Sbjct: 8   LLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRS 67
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           YFE TD L++V+DS+D +R ++   EL  LL+EE+LS   +LI ANKQD+  A   +EIA
Sbjct: 68  YFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIA 127
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
           + LNL  + + R W+I  CSA TGEG+ +G +W+ +++
Sbjct: 128 EGLNLHTI-RDRVWQIQSCSALTGEGVQDGMNWVCKNV 164

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 106/161 (65%), Gaps = 1/161 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           L++GLD +GKTTI+ ++   +     PT+GFN++TVTY+     +WD+GGQ +IR YWR 
Sbjct: 6   LILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRC 65
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           Y+  TD +++VVDS D  R+   K EL  +L+EE L  A L++ ANKQD+  A+TP+E+A
Sbjct: 66  YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMA 125
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
             L L A+ K R W+I   SA  G GL E  +WLV+ + SR
Sbjct: 126 NALGLPAL-KDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 165

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score =  152 bits (383), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/154 (46%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           LMVGLD +GKTTI+ K+   +     PT+GFN++TV ++  +  +WDVGGQ  IR  WR+
Sbjct: 21  LMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRH 80
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           Y+  TDGL++VVDS+D  R+DD + EL  ++ EE L  A +L+ ANKQD+  A++  E+ 
Sbjct: 81  YYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAMSAAEVT 140
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173
           + L+L  + + R+W I    A  G+GL EGFDWL
Sbjct: 141 EKLHLNTI-RERNWFIQSTCATRGDGLYEGFDWL 173

>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164

Iteration: 1
 Score =  150 bits (379), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 79/158 (50%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           L++GLDN+GKTT++ ++  ED S I+PT GFNIK+V  Q + LN+WD+GG R IR YWR+
Sbjct: 8   LLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGLRKIRPYWRS 67
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           YFE TD L++V+DS+D +R ++   EL  LL+EE+LS   +LI ANKQD+  A   +EIA
Sbjct: 68  YFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIA 127
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
           + LNL  + + R W+I  CSA TGEG+ +G +W+ +++
Sbjct: 128 EGLNLHTI-RDRVWQIQSCSALTGEGVQDGMNWVCKNV 164

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score =  146 bits (368), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 71/154 (46%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           LMVGLD +GKTTI+ K+   +     PT+GFN++TV Y+  +  +WDVGGQ  IR  WR+
Sbjct: 4   LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 63
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           YF+ T GL++VVDS+D  R+++ + EL  +L E+ L  A LL+ ANKQD+  A+   EI 
Sbjct: 64  YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEIT 123
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173
             L L ++ + R+W I    A +G+GL EG DWL
Sbjct: 124 DKLGLHSL-RHRNWYIQATCATSGDGLYEGLDWL 156

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score =  145 bits (367), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 71/154 (46%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           LMVGLD +GKTTI+ K+   +     PT+GFN++TV Y+  +  +WDVGGQ  IR  WR+
Sbjct: 21  LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           YF+ T GL++VVDS+D  R+++ + EL  +L E+ L  A LL+ ANKQD+  A+   EI 
Sbjct: 81  YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEIT 140
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173
             L L ++ + R+W I    A +G+GL EG DWL
Sbjct: 141 DKLGLHSL-RHRNWYIQATCATSGDGLYEGLDWL 173

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score =  145 bits (367), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 71/154 (46%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           LMVGLD +GKTTI+ K+   +     PT+GFN++TV Y+  +  +WDVGGQ  IR  WR+
Sbjct: 20  LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 79
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           YF+ T GL++VVDS+D  R+++ + EL  +L E+ L  A LL+ ANKQD+  A+   EI 
Sbjct: 80  YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEIT 139
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173
             L L ++ + R+W I    A +G+GL EG DWL
Sbjct: 140 DKLGLHSL-RHRNWYIQATCATSGDGLYEGLDWL 172

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score =  145 bits (366), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 104/155 (67%), Gaps = 3/155 (1%)
Query: 20  LMVGLDNSGKTTIVLKIN-GEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWR 78
           LMVGLD +GKTTI+ K+  GE  + I PT+GFN++TV Y+  +  +WDVGGQ  IR  WR
Sbjct: 169 LMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 227
Query: 79  NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEI 138
           +YF+ T GL++VVDS+D  R+++ + EL  +L E+ L  A LL+ ANKQD+  A+   EI
Sbjct: 228 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEI 287
Query: 139 AKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173
              L L ++ + R+W I    A +G+GL EG DWL
Sbjct: 288 TDKLGLHSL-RHRNWYIQATCATSGDGLYEGLDWL 321

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score =  143 bits (360), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 102/161 (63%), Gaps = 1/161 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           LMVGLD +GKTTI+ K+   +     PT+GFN++TV Y+     +WDVGGQ  IR  WR+
Sbjct: 33  LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRH 92
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           YF+ T GL++VVDS+D  R+ +   EL  +L+E+ L  A LL+ ANKQD+  A+  +E+ 
Sbjct: 93  YFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELT 152
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
             L L+ + ++R W +    A  G GL +G DWL  +++ R
Sbjct: 153 DKLGLQHL-RSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score =  143 bits (360), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 70/163 (42%), Positives = 106/163 (65%), Gaps = 3/163 (1%)
Query: 20  LMVGLDNSGKTTIVLKIN-GEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWR 78
           LM+GLD +GKTTI+ K+  G+  + I PT+GFN++TVTY+    N+WDVGGQ  IR  WR
Sbjct: 326 LMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWR 384
Query: 79  NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEI 138
           +Y+  T GL++VVD +D  R+D+ + EL  ++ +  +  A +LI ANKQD+  A+ P EI
Sbjct: 385 HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEI 444
Query: 139 AKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
            + L L  + + R+W +    A +G+GL EG  WL  +  S++
Sbjct: 445 QEKLGLTRI-RDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKL 486

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score =  142 bits (359), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 70/154 (45%), Positives = 100/154 (64%), Gaps = 1/154 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           LMVGLD +GKTTI+ K+   +     PT+GFN++TV Y+  +  +WDVGG   IR  WR+
Sbjct: 6   LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGLDKIRPLWRH 65
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           YF+ T GL++VVDS+D  R+++ + EL  +L E+ L  A LL+ ANKQD+  A+   EI 
Sbjct: 66  YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEIT 125
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173
             L L ++ + R+W I    A +G+GL EG DWL
Sbjct: 126 DKLGLHSL-RHRNWYIQATCATSGDGLYEGLDWL 158

>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166

Iteration: 1
 Score =  142 bits (357), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 103/160 (64%), Gaps = 1/160 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           L++GLD +GKTTI+ ++   +     PT+GFN++TVTY+     +WD+GG  +IR YWR 
Sbjct: 8   LILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRC 67
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           Y+  TD +++VVDS D  R+   K EL  +L+EE L  A L++ ANKQD+  A+T +E+A
Sbjct: 68  YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMA 127
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179
             L L A+ K R W+I   SA  G GL E  +WLV+ + S
Sbjct: 128 NSLGLPAL-KDRKWQIFKTSATKGTGLDEAMEWLVETLKS 166

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score =  140 bits (354), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 101/160 (63%), Gaps = 1/160 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           LM+GLD +GKTTI+ K+    +    PT+GFN++TVTY+    N+WDVGGQ  IR  WR+
Sbjct: 17  LMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 76
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           Y+  T GL++VVD +D  R+D+ + EL  ++ +  +  A +LI ANKQD+  A+ P EI 
Sbjct: 77  YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQ 136
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179
           + L L  + + R+W +    A +G+GL EG  WL  +  S
Sbjct: 137 EKLGLTRI-RDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 175

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score =  140 bits (353), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 101/160 (63%), Gaps = 1/160 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           LM+GLD +GKTTI+ K+    +    PT+GFN++TVTY+    N+WDVGGQ  IR  WR+
Sbjct: 16  LMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 75
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           Y+  T GL++VVD +D  R+D+ + EL  ++ +  +  A +LI ANKQD+  A+ P EI 
Sbjct: 76  YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQ 135
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179
           + L L  + + R+W +    A +G+GL EG  WL  +  S
Sbjct: 136 EKLGLTRI-RDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 174

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score =  140 bits (353), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 101/160 (63%), Gaps = 1/160 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           LM+GLD +GKTTI+ K+    +    PT+GFN++TVTY+    N+WDVGGQ  IR  WR+
Sbjct: 4   LMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 63
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           Y+  T GL++VVD +D  R+D+ + EL  ++ +  +  A +LI ANKQD+  A+ P EI 
Sbjct: 64  YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQ 123
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179
           + L L  + + R+W +    A +G+GL EG  WL  +  S
Sbjct: 124 EKLGLTRI-RDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 162

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score =  140 bits (352), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 66/154 (42%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           LMVGLD +GKTT++ K+   +     PT+GFN++TV Y+  +  +WDVGGQ  IRS WR+
Sbjct: 4   LMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRH 63
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           Y+  T+G+++VVDS+D  R+ + +  +  +L E+ L  A+ L+ ANKQD+  A++  EI 
Sbjct: 64  YYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEIT 123
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173
           + L L ++ + R W I    A +GEGL EG +WL
Sbjct: 124 EKLGLHSI-RNRPWFIQATCATSGEGLYEGLEWL 156

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score =  140 bits (352), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 66/154 (42%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           LMVGLD +GKTT++ K+   +     PT+GFN++TV Y+  +  +WDVGGQ  IRS WR+
Sbjct: 21  LMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRH 80
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           Y+  T+G+++VVDS+D  R+ + +  +  +L E+ L  A+ L+ ANKQD+  A++  EI 
Sbjct: 81  YYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEIT 140
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173
           + L L ++ + R W I    A +GEGL EG +WL
Sbjct: 141 EKLGLHSI-RNRPWFIQATCATSGEGLYEGLEWL 173

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score =  139 bits (351), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 100/157 (63%), Gaps = 1/157 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           LM+GLD +GKTTI+ K+    +    PT+GFN++TVTY+    N+WDVGGQ  IR  WR+
Sbjct: 4   LMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 63
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           Y+  T GL++VVD +D  R+D+ + EL  ++ +  +  A +LI ANKQD+  A+ P EI 
Sbjct: 64  YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQ 123
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQD 176
           + L L  + + R+W +    A +G+GL EG  WL  +
Sbjct: 124 EKLGLTRI-RDRNWYVQPSCATSGDGLYEGLTWLTSN 159

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score =  139 bits (349), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 104/161 (64%), Gaps = 1/161 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           LMVGLD +GKTT++ K+   +     PT+GFN++TV Y+  +  +WDVGGQ  IRS WR+
Sbjct: 21  LMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRH 80
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           Y+  T+G+++V+DS+D  R+ + +  +  +L E+ L  A  L+ ANKQD+  A++  EI 
Sbjct: 81  YYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEIT 140
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           + L L ++ + R W I    A +GEGL EG +WL  ++ ++
Sbjct: 141 EKLGLHSI-RNRPWFIQSTCATSGEGLYEGLEWLSNNLKNQ 180

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score =  137 bits (346), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 100/161 (62%), Gaps = 1/161 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           LMVGLD +GKTTI+ K+   +     PT+GFN++TV Y+     +WDVGGQ  IR  W++
Sbjct: 21  LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKH 80
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           YF+ T GL++VVDS+D  R+ +   EL  +L  + L  A LL+ ANKQD+  A+  +E+ 
Sbjct: 81  YFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMT 140
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
             L L+++ + R W +    A  G GL EG DWL  +++ R
Sbjct: 141 DKLGLQSL-RNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score =  137 bits (345), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 100/160 (62%), Gaps = 1/160 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           LM+GLD +GKTTI+ K+    +    PT+GFN++TVTY+    N+WDVGG   IR  WR+
Sbjct: 6   LMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRH 65
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           Y+  T GL++VVD +D  R+D+ + EL  ++ +  +  A +LI ANKQD+  A+ P EI 
Sbjct: 66  YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQ 125
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179
           + L L  + + R+W +    A +G+GL EG  WL  +  S
Sbjct: 126 EKLGLTRI-RDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 164

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score =  137 bits (345), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 100/160 (62%), Gaps = 1/160 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           LM+GLD +GKTTI+ K+    +    PT+GFN++TVTY+    N+WDVGG   IR  WR+
Sbjct: 17  LMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRH 76
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           Y+  T GL++VVD +D  R+D+ + EL  ++ +  +  A +LI ANKQD+  A+ P EI 
Sbjct: 77  YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQ 136
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179
           + L L  + + R+W +    A +G+GL EG  WL  +  S
Sbjct: 137 EKLGLTRI-RDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 175

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score =  137 bits (345), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 100/160 (62%), Gaps = 1/160 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           LM+GLD +GKTTI+ K+    +    PT+GFN++TVTY+    N+WDVGG   IR  WR+
Sbjct: 7   LMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRH 66
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           Y+  T GL++VVD +D  R+D+ + EL  ++ +  +  A +LI ANKQD+  A+ P EI 
Sbjct: 67  YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQ 126
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179
           + L L  + + R+W +    A +G+GL EG  WL  +  S
Sbjct: 127 EKLGLTRI-RDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 165

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score =  135 bits (340), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 98/160 (61%), Gaps = 1/160 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           L +GLD +GKTTI+ K+    +    PT+GFN++TVTY+    N+WDVGGQ  IR  WR+
Sbjct: 4   LXLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 63
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           Y+  T GL++VVD +D  R+D+ + EL  ++ +     A +LI ANKQD+  A  P EI 
Sbjct: 64  YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDAXKPHEIQ 123
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179
           + L L  + + R+W +    A +G+GL EG  WL  +  S
Sbjct: 124 EKLGLTRI-RDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 162

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score =  135 bits (340), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 99/154 (64%), Gaps = 1/154 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           LMVGLD +GKTT++ K+   +     PT+GFN++ V Y   +  +WDVGGQ  IRS WR+
Sbjct: 21  LMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYCNISFTVWDVGGQDRIRSLWRH 80
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           Y+  T+G+++VVDS+D  R+ + +  +  +L E+ L  A+ L+ ANKQD+  A++  EI 
Sbjct: 81  YYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLPEAMSAAEIT 140
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173
           + L L ++ + R W I    A +GEGL EG +WL
Sbjct: 141 EKLGLHSI-RNRPWFIQATCATSGEGLYEGLEWL 173

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score =  134 bits (337), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 101/180 (56%), Gaps = 1/180 (0%)
Query: 1   MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
           MGL+               ++VGLDN+GKTTI+ +    +    SPT+G N++ +  +  
Sbjct: 1   MGLIFAKLWSLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNT 60
Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
              +WD+GGQ ++RS W  Y+  T+ ++ VVDS D  RL   K EL  +L  E L  A++
Sbjct: 61  HFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAV 120
Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           LI ANKQD+ G +T  EI+K L L ++ K   W I  C A TGEGL +G +W+   I  R
Sbjct: 121 LIFANKQDMKGCMTAAEISKYLTLSSI-KDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR 179

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score =  134 bits (336), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 100/158 (63%), Gaps = 1/158 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           LMVGLD +GKT+I+ K+   +     PT+GFN++TV Y+  +  +WDVGGQ  IR  WR+
Sbjct: 21  LMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           Y++ T  +++VVDS+D  R+ + + EL  +L E+ +  A LL+ ANK D+  A++ +E+ 
Sbjct: 81  YYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQAMSISEVT 140
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
           + L L+ + K R W      A  G+GL EG DWL  ++
Sbjct: 141 EKLGLQTI-KNRKWYCQTSCATNGDGLYEGLDWLADNL 177

>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189

Iteration: 1
 Score =  133 bits (335), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 71/156 (45%), Positives = 104/156 (66%), Gaps = 1/156 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           LM+GLDN+GKT+I+ +++  D     PT+G N++T+ Y+  +  +WD+GGQ  +R YWR 
Sbjct: 26  LMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRC 85
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           YF  TD +++VVDS+D  R+   K EL  LL E+ L  + LLI ANKQD+  A +  EIA
Sbjct: 86  YFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIA 145
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ 175
           + L + ++   R W IV  S+ TG+GL+EG DWLV+
Sbjct: 146 EQLGVSSI-MNRTWTIVKSSSKTGDGLVEGMDWLVE 180

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score =  130 bits (327), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 102/181 (56%), Gaps = 1/181 (0%)
Query: 1   MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
           MG+L               ++VGLDN+GKTTI+ + +  +    SPT+G N++ +     
Sbjct: 1   MGILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT 60
Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
              +WD+GGQ ++RS W  Y+  T+ ++ VVDS+D  R+   + EL  +L  E L  A L
Sbjct: 61  RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 120
Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           LI ANKQD+   +T  EI++ L L ++ K   W I  C A TGEGL +G +W++  +  R
Sbjct: 121 LIFANKQDVKECMTVAEISQFLKLTSI-KDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179
Query: 181 I 181
           +
Sbjct: 180 L 180

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score =  130 bits (326), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 101/180 (56%), Gaps = 1/180 (0%)
Query: 1   MGLLSXXXXXXXXXXXXXXLMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
           MG+L               ++VGLDN+GKTTI+ + +  +    SPT+G N++ +     
Sbjct: 1   MGILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT 60
Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
              +WD+GGQ ++RS W  Y+  T+ ++ VVDS+D  R+   + EL  +L  E L  A L
Sbjct: 61  RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 120
Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           LI ANKQD+   +T  EI++ L L ++ K   W I  C A TGEGL +G +W++  +  R
Sbjct: 121 LIFANKQDVKECMTVAEISQFLKLTSI-KDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/155 (40%), Positives = 95/155 (61%), Gaps = 1/155 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           ++VGLDN+GKTTI+ + +  +    SPT+G N++ +        +WD+GGQ ++RS W  
Sbjct: 25  IIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNT 84
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           Y+  T+ ++ VVDS+D  R+   + EL  +L  E L  A LLI ANKQD+   +T  EI+
Sbjct: 85  YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEIS 144
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLV 174
           + L L ++ K   W I  C A TGEGL +G +W++
Sbjct: 145 QFLKLTSI-KDHQWHIQACCALTGEGLCQGLEWMM 178

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/155 (40%), Positives = 95/155 (61%), Gaps = 1/155 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           ++VGLDN+GKTTI+ + +  +    SPT+G N++ +        +WD+GGQ ++RS W  
Sbjct: 26  IIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNT 85
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           Y+  T+ ++ VVDS+D  R+   + EL  +L  E L  A LLI ANKQD+   +T  EI+
Sbjct: 86  YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEIS 145
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLV 174
           + L L ++ K   W I  C A TGEGL +G +W++
Sbjct: 146 QFLKLTSI-KDHQWHIQACCALTGEGLCQGLEWMM 179

>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171

Iteration: 1
 Score =  126 bits (316), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 72/161 (44%), Positives = 100/161 (62%), Gaps = 1/161 (0%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           L++GLD +GKTTI+ ++   +     PT+GFN++TVTY+     +WD+GG  +IR YWR 
Sbjct: 11  LILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRC 70
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           Y+  TD +++VVDS D  R+   K EL   L+EE L  A L++ ANKQD   A T +E A
Sbjct: 71  YYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQAXTSSEXA 130
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
             L L A+ K R W+I   SA  G GL E  +WLV+ + SR
Sbjct: 131 NSLGLPAL-KDRKWQIFKTSATKGTGLDEAXEWLVETLKSR 170

>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190

Iteration: 1
 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 95/164 (57%), Gaps = 5/164 (3%)
Query: 20  LMVGLDNSGKTTIV--LKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYW 77
           L +GLDNSGKTTI+  LK +   +  I PT+GF+I+       +  ++D+ GQ   R+ W
Sbjct: 25  LCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLW 84
Query: 78  RNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLIL--ANKQDINGALTP 135
            +Y+++   +++V+DSSD  R+   K ELD LL    +    + IL  ANK D+  A+T 
Sbjct: 85  EHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTS 144
Query: 136 TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179
            +++++L LE + K + W I    A  GEGL EG DWL   I +
Sbjct: 145 VKVSQLLCLENI-KDKPWHICASDAIKGEGLQEGVDWLQDQIQT 187

>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199

Iteration: 1
 Score =  109 bits (273), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 93/170 (54%), Gaps = 10/170 (5%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSV--ISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYW 77
           +M GLDNSGKTTI+ ++    +S   I+ T+G+N++T    +    ++D+GG +  R  W
Sbjct: 21  VMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLW 80
Query: 78  RNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEE----RLSGA---SLLILANKQDIN 130
             Y++  D +++VVDSSD  RL   K E+  +LK E     L G      L  ANK D  
Sbjct: 81  ETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAA 140
Query: 131 GALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           GA T  E+ ++L+L  +     + I   +   G G+ EGF WL Q+ ASR
Sbjct: 141 GAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWL-QETASR 189

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score =  103 bits (258), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 91/161 (56%), Gaps = 2/161 (1%)
Query: 21  MVGLDNSGKTTIVLKI-NGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           +VGL  SGKTT V  I +G+    + PT+GFN++ +T    T+ +WD+GGQ   RS W  
Sbjct: 27  LVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWER 86
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           Y      +V++VD++D  +++  K EL NLL + +L G  +L+L NK+D+ GAL   E+ 
Sbjct: 87  YCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELI 146
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           + +NL A+ + R       S    + +     WL+Q   SR
Sbjct: 147 EKMNLSAI-QDREICCYSISCKEKDNIDITLQWLIQHSKSR 186

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 92/161 (57%), Gaps = 2/161 (1%)
Query: 21  MVGLDNSGKTTIVLKI-NGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           +VGL  SGKTT V  I +G+ +  + PT+GFN++ VT    T+ IWD+GGQ   RS W  
Sbjct: 27  LVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWER 86
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           Y    + +V+++D++D  +++  + EL NLL + +L G  +L+L NK+D+  AL   ++ 
Sbjct: 87  YCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLI 146
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           + +NL A+ + R       S    + +     WL+Q   SR
Sbjct: 147 EKMNLSAI-QDREICCYSISCKEKDNIDITLQWLIQHSKSR 186

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score =  100 bits (250), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 89/156 (57%), Gaps = 2/156 (1%)
Query: 21  MVGLDNSGKTTIVLKI-NGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           +VGL  SGKTT V  I +G+    + PT+GFN++ +T    T+ +WD+GGQ   RS W  
Sbjct: 36  LVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWER 95
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           Y      +V++VD++D  +++  K EL NLL + +L G  +L+L NK+D+ GAL   E+ 
Sbjct: 96  YCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELI 155
Query: 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ 175
           + +NL A+ + R       S    + +     WL+Q
Sbjct: 156 EKMNLSAI-QDREICCYSISCKEKDNIDITLQWLIQ 190

>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 6/162 (3%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           L +GLDN+GKTT++  +  +  + + PT     + +         +D+GG    R  W++
Sbjct: 5   LFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKD 64
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           YF + +G+V++VD++D  R D+ ++ELD L     L     +IL NK D   A++  E+ 
Sbjct: 65  YFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELR 124
Query: 140 KVLNL------EAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ 175
             L L      + ++  R  ++  CS     G LE F WL Q
Sbjct: 125 SALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 166

>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 6/164 (3%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           L +GLDN+GKTT++  +  +  + + PT     + +         +D+GG    R  W++
Sbjct: 27  LFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKD 86
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           YF + +G+V++VD++D  R D+ ++ELD L     L     +IL NK D   A++  E+ 
Sbjct: 87  YFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELR 146
Query: 140 KVLNL------EAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
             L L      + ++  R  ++  CS     G LE F WL Q I
Sbjct: 147 SALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190

>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208

Iteration: 1
 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 11/169 (6%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           + +GLDN+GKTT++  +  +      PTL    + +T    T   +D+GG    R  W+N
Sbjct: 39  VFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKN 98
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           Y    +G+V++VD +D  RL + K+EL+ L+ +E +S   +LIL NK D   A++  ++ 
Sbjct: 99  YLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLR 158
Query: 140 KVLNLEAMD-----------KTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
           ++  L                 R  ++  CS    +G  EGF WL Q I
Sbjct: 159 EIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 207

>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 11/169 (6%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           + +GLDN+GKTT++  +  +      PTL    + +T    T   +D+GG    R  W+N
Sbjct: 26  VFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKN 85
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           Y    +G+V++VD +D  RL + K ELD+L+ +E ++   +LIL NK D   A++   + 
Sbjct: 86  YLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLR 145
Query: 140 KVLNLEAMD-----------KTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
           ++  L                 R  ++  CS    +G  EGF W+ Q I
Sbjct: 146 EMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 194

>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 11/169 (6%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           + +GLDN+GKTT++  +  +      PTL    + +T    T   +D+GG    R  W+N
Sbjct: 29  VFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKN 88
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           Y    +G+V++VD +D  RL + K ELD+L+ +E ++   +LIL NK D   A++   + 
Sbjct: 89  YLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLR 148
Query: 140 KVLNLEAMD-----------KTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
           ++  L                 R  ++  CS    +G  EGF W+ Q I
Sbjct: 149 EMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197

>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 11/169 (6%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79
           + +GLDN+GKTT++  +  +      PTL    + +T    T   +D+GG    R  W+N
Sbjct: 20  VFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGGIQARRVWKN 79
Query: 80  YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIA 139
           Y    +G+V++VD +D  RL + K ELD+L+ +E ++   +LIL NK D   A++   + 
Sbjct: 80  YLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLR 139
Query: 140 KVLNLEAMD-----------KTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
           ++  L                 R  ++  CS    +G  EGF W+ Q I
Sbjct: 140 EMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 188

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 8/117 (6%)
Query: 20  LMVGLDNSGKTTIVLKINGEDT--SVISPTLG--FNIKTVTY--QKYTLNIWDVGGQRTI 73
           L++G    GKT ++ + + ED   S    T+G  F I+T+    ++  L IWD  GQ   
Sbjct: 12  LLIGDSGVGKTCVLFRFS-EDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 70
Query: 74  RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130
           R+    Y+    G++ V D ++ +  D+ +  + N ++E   +    +IL NK D+N
Sbjct: 71  RTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRN-IEEHASADVEKMILGNKCDVN 126

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 8/117 (6%)
Query: 20  LMVGLDNSGKTTIVLKINGEDT--SVISPTLG--FNIKTVTY--QKYTLNIWDVGGQRTI 73
           L++G    GKT ++ + + ED   S    T+G  F I+T+    ++  L IWD  GQ   
Sbjct: 10  LLIGDSGVGKTCVLFRFS-EDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 68
Query: 74  RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130
           R+    Y+    G++ V D ++ +  D+ +  + N ++E   +    +IL NK D+N
Sbjct: 69  RTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRN-IEEHASADVEKMILGNKCDVN 124

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 16/170 (9%)
Query: 20  LMVGLDNSGKTTIVLKINGE---DTSVISPTLGFNIKTVTYQKYT--LNIWDVGGQRTIR 74
           L++G    GK+ ++L+   +   D+ + +  + F I+T++ +  T  L IWD  GQ   R
Sbjct: 13  LLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFR 72
Query: 75  SYWRNYFEQTDGLVWVVDSSDLRRLDDCK---MELDNLLKEERLSGASLLILANKQDING 131
           +   +Y+    G++ V D +D    D+ K    E+D    E      + L++ NK D   
Sbjct: 73  TITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAME----NVNKLLVGNKCD--- 125
Query: 132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
            L    +        +  +   K +  SA     + + F  +  +I  R+
Sbjct: 126 -LVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRV 174

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 20  LMVGLDNSGKTTIVLKI-NGEDTSVISPTLG--FNIKT--VTYQKYTLNIWDVGGQRTIR 74
           ++ G    GK++ ++++   E    IS TLG  F +KT  V  ++  L +WD  GQ   R
Sbjct: 32  VLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFR 91
Query: 75  SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130
           S  ++YF + DG++ + D +  +   + +  +D ++++       ++++ NK DI 
Sbjct: 92  SIAKSYFRKADGVLLLYDVTCEKSFLNIREWVD-MIEDAAHETVPIMLVGNKADIR 146

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 24/170 (14%)
Query: 20  LMVGLDNSGKTTIVLKINGEDT--SVISPTLG--FNIKTVTY--QKYTLNIWDVGGQRTI 73
           L++G    GK++++L+   +DT    ++ T+G  F +KT++    K  L IWD  GQ   
Sbjct: 19  LIIGESGVGKSSLLLRFT-DDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF 77
Query: 74  RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL 133
           R+   +Y+    G++ V D +  RR  D  ++LDN L E       L     + DI   L
Sbjct: 78  RTLTPSYYRGAQGVILVYDVT--RR--DTFVKLDNWLNE-------LETYCTRNDIVNXL 126
Query: 134 TPTEIAK----VLNLEAMDKTRHWK--IVGCSAYTGEGLLEGFDWLVQDI 177
              +I K    V   E +   R      +  SA T +G+   F+ LV+ I
Sbjct: 127 VGNKIDKENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 13/168 (7%)
Query: 20  LMVGLDNSGKTTIVLKI--NGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQRTI 73
           L++G    GK+ ++++   +  + S I+ T+G  F IKTV    +K  L IWD  GQ   
Sbjct: 7   LLIGDSGVGKSCLLVRFVEDKFNPSFIT-TIGIDFKIKTVDINGKKVKLQIWDTAGQERF 65
Query: 74  RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL 133
           R+    Y+    G++ V D +D R   + K      + E     A LL++ NK D     
Sbjct: 66  RTITTAYYRGAXGIILVYDITDERTFTNIKQWF-KTVNEHANDEAQLLLVGNKSD----- 119
Query: 134 TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
             T +      EA+ K      +  SA   + + E F  L + I  +I
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 13/168 (7%)
Query: 20  LMVGLDNSGKTTIVLKI--NGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQRTI 73
           L++G    GK+ ++++   +  + S I+ T+G  F IKTV    +K  L IWD  GQ   
Sbjct: 7   LLIGDSGVGKSCLLVRFVEDKFNPSFIT-TIGIDFKIKTVDINGKKVKLQIWDTAGQERF 65
Query: 74  RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL 133
           R+    Y+    G++ V D +D R   + K      + E     A LL++ NK D+    
Sbjct: 66  RTITTAYYRGAMGIILVYDITDERTFTNIKQWF-KTVNEHANDEAQLLLVGNKSDM---- 120
Query: 134 TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
             T +      EA+ K      +  SA   + + E F  L + I  +I
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 13/168 (7%)
Query: 20  LMVGLDNSGKTTIVLKI--NGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQRTI 73
           L++G    GK+ ++++   +  + S I+ T+G  F IKTV    +K  L +WD  GQ   
Sbjct: 7   LLIGDSGVGKSCLLVRFVEDKFNPSFIT-TIGIDFKIKTVDINGKKVKLQLWDTAGQERF 65
Query: 74  RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL 133
           R+    Y+    G++ V D +D R   + K      + E     A LL++ NK D     
Sbjct: 66  RTITTAYYRGAXGIILVYDVTDERTFTNIKQWF-KTVNEHANDEAQLLLVGNKSD----- 119
Query: 134 TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
             T +      EA+ K      +  SA   + + E F  L + I  +I
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 13/168 (7%)
Query: 20  LMVGLDNSGKTTIVLKI--NGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQRTI 73
           L++G    GK+ ++++   +  + S I+ T+G  F IKTV    +K  L +WD  GQ   
Sbjct: 11  LLIGDSGVGKSCLLVRFVEDKFNPSFIT-TIGIDFKIKTVDINGKKVKLQLWDTAGQERF 69
Query: 74  RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL 133
           R+    Y+    G++ V D +D R   + K      + E     A LL++ NK D+    
Sbjct: 70  RTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKT-VNEHANDEAQLLLVGNKSDME--- 125
Query: 134 TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
             T +      EA+ K      +  SA   + + E F  L + I  +I
Sbjct: 126 --TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 171

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 13/168 (7%)
Query: 20  LMVGLDNSGKTTIVLKI--NGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQRTI 73
           L++G    GK+ ++++   +  + S I+ T+G  F IKTV    +K  L +WD  GQ   
Sbjct: 24  LLIGDSGVGKSCLLVRFVEDKFNPSFIT-TIGIDFKIKTVDINGKKVKLQLWDTAGQERF 82
Query: 74  RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL 133
           R+    Y+    G++ V D +D R   + K      + E     A LL++ NK D+    
Sbjct: 83  RTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKT-VNEHANDEAQLLLVGNKSDM---- 137
Query: 134 TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
             T +      EA+ K      +  SA   + + E F  L + I  +I
Sbjct: 138 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 10/118 (8%)
Query: 20  LMVGLDNSGKTTIVLKINGED-TSVISPTLG--FNIKTVTYQKYT--LNIWDVGGQRTIR 74
           L++G    GK+ ++L+ + +  T+    T+G  F IKTV     T  L IWD  GQ   R
Sbjct: 25  LLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFR 84
Query: 75  SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL--LILANKQDIN 130
           +   +Y+  + G++ V D +D    +  KM L  +   +R + +++  L++ NK D+ 
Sbjct: 85  TITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI---DRYATSTVLKLLVGNKCDLK 139

>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To Alf4 And Gdp Length = 353

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 46  PTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD---------- 95
           PT G      T++     ++DVGGQR+ R  W + FE    +++ V  SD          
Sbjct: 179 PTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 238
Query: 96  LRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
           + R+ +     D++   +  +  S+++  NK+D+
Sbjct: 239 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 10/117 (8%)
Query: 20  LMVGLDNSGKTTIVLKINGED-TSVISPTLG--FNIKTVTYQKYT--LNIWDVGGQRTIR 74
           L++G    GK+ ++L+ + +  T+    T+G  F IKTV     T  L IWD  GQ   R
Sbjct: 12  LLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFR 71
Query: 75  SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL--LILANKQDI 129
           +   +Y+  + G++ V D +D    +  KM L  +   +R + +++  L++ NK D+
Sbjct: 72  TITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI---DRYATSTVLKLLVGNKCDL 125

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 10/117 (8%)
Query: 20  LMVGLDNSGKTTIVLKINGED-TSVISPTLG--FNIKTVTYQKYT--LNIWDVGGQRTIR 74
           L++G    GK+ ++L+ + +  T+    T+G  F IKTV     T  L IWD  GQ   R
Sbjct: 12  LLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFR 71
Query: 75  SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL--LILANKQDI 129
           +   +Y+  + G++ V D +D    +  KM L  +   +R + +++  L++ NK D+
Sbjct: 72  TITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI---DRYATSTVLKLLVGNKCDL 125

>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A Complex With Galpha(13):galpha(i1) Chimera Length = 340

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 46  PTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL--------- 96
           PT G +    T++     ++DVGGQR+ R  W   FE    +++ V  SD          
Sbjct: 166 PTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQ 225
Query: 97  -RRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
             R+ +     D++   +  +  S+++  NK+D+
Sbjct: 226 TNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 259

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 16/170 (9%)
Query: 20  LMVGLDNSGKTTIVL-----KINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR 74
           L++G   +GK+ ++      K   +    I    G  I  V  +   L IWD  GQ   R
Sbjct: 14  LVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFR 73
Query: 75  SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS---LLILANKQDING 131
           S  R+Y+    G + V D +     +     L N L + R+  +    +++  NK+D++ 
Sbjct: 74  SVTRSYYRGAAGALLVYDITSRETYN----ALTNWLTDARMLASQNIVIILCGNKKDLDA 129
Query: 132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
               T     L      +      +  SA TGE + E F    + I ++I
Sbjct: 130 DREVT----FLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKI 175

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 73/172 (42%), Gaps = 19/172 (11%)
Query: 20  LMVGLDNSGKTTIVLKINGEDT--SVISPTLG--FNIKTVTY--QKYTLNIWDVGGQRTI 73
           +++G    GKT+++ +   +DT       T+G  F IKTV    +K  L IWD  GQ   
Sbjct: 30  IIIGSRGVGKTSLMERFT-DDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 88
Query: 74  RSYWRNYFEQTDGLVWVVDSSDLRRLDD----CKMELDNLLKEERLSGASLLILANKQDI 129
            S    Y+    G++ V D +     DD     KM +D    E+    A LL++ NK D 
Sbjct: 89  NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKM-IDKYASED----AELLLVGNKLDC 143
Query: 130 NGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
               T  EI +    +   +    +    SA     + E F  LV DI  ++
Sbjct: 144 E---TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 16/120 (13%)
Query: 20  LMVGLDNSGKTTIVLKINGEDT---SVISPTLG--FNIKTVTYQKYT--LNIWDVGGQRT 72
           L++G    GK+ ++L+   +DT   S IS T+G  F I+T+     T  L IWD  GQ  
Sbjct: 20  LLIGDSGVGKSCLLLRF-ADDTYTESYIS-TIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 73  IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCK---MELDNLLKEERLSGASLLILANKQDI 129
            R+   +Y+    G++ V D +D    ++ K    E+D    E      + L++ NK D+
Sbjct: 78  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN----VNKLLVGNKCDL 133

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 71/150 (47%), Gaps = 17/150 (11%)
Query: 20  LMVGLDNSGKTTIVLKIN-GEDTSVISPTLG--FNIKTVTYQ--KYTLNIWDVGGQRTIR 74
           ++VG  + GKT +V +   G  +     T+G  F +KT+  Q  +  L IWD  GQ   R
Sbjct: 33  VLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFR 92
Query: 75  SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL--LILANKQDINGA 132
           +  ++Y+   +G +   D +           ++++ K    +G+++  L++ NK D+   
Sbjct: 93  TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRK---YAGSNIVQLLIGNKSDL--- 146
Query: 133 LTPTEIAKVLNLEAMDKTRHWKIVGCSAYT 162
              +E+ +V   EA     H+ I+ C+  T
Sbjct: 147 ---SELREVSLAEAQSLAEHYDIL-CAIET 172

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 22/170 (12%)
Query: 21  MVGLDNSGKTTIVLKINGEDT--SVISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIR 74
           ++G    GK++IV +   ED+    I+PT+G  F  KTV YQ   +   IWD  GQ   R
Sbjct: 10  LLGDTGVGKSSIVWRF-VEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFR 68
Query: 75  SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILA---NKQDING 131
           +    Y+  +   + V D +     ++    L N ++E R  G   +++A   NK D+  
Sbjct: 69  ALAPMYYRGSAAAIIVYDITK----EETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL-- 122
Query: 132 ALTPTEIAKVLNLEAMD--KTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179
               T++ +V+  +A D   + H   V  SA     + E F  + + I S
Sbjct: 123 ----TDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 168

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVIS--PTLG--FNIKTVTYQKYT--LNIWDVGGQRTI 73
           L++G    GK+ ++L+   +DT   S   T+G  F I+T+     T  L IWD  GQ   
Sbjct: 29  LLIGDSGVGKSCLLLRF-ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 87
Query: 74  RSYWRNYFEQTDGLVWVVDSSDLRRLDDCK---MELDNLLKEERLSGASLLILANKQDI 129
           R+   +Y+    G++ V D +D    ++ K    E+D    E      + L++ NK D+
Sbjct: 88  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCDL 142

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVIS--PTLG--FNIKTVTYQKYT--LNIWDVGGQRTI 73
           L++G    GK+ ++L+   +DT   S   T+G  F I+T+     T  L IWD  GQ   
Sbjct: 37  LLIGDSGVGKSCLLLRF-ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 95
Query: 74  RSYWRNYFEQTDGLVWVVDSSDLRRLDDCK---MELDNLLKEERLSGASLLILANKQDI 129
           R+   +Y+    G++ V D +D    ++ K    E+D    E      + L++ NK D+
Sbjct: 96  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCDL 150

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVIS--PTLG--FNIKTVTYQKYT--LNIWDVGGQRTI 73
           L++G    GK+ ++L+   +DT   S   T+G  F I+T+     T  L IWD  GQ   
Sbjct: 10  LLIGDSGVGKSCLLLRF-ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 68
Query: 74  RSYWRNYFEQTDGLVWVVDSSDLRRLDDCK---MELDNLLKEERLSGASLLILANKQDI 129
           R+   +Y+    G++ V D +D    ++ K    E+D    E      + L++ NK D+
Sbjct: 69  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCDL 123

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVIS--PTLG--FNIKTVTYQKYT--LNIWDVGGQRTI 73
           L++G    GK+ ++L+   +DT   S   T+G  F I+T+     T  L IWD  GQ   
Sbjct: 3   LLIGDSGVGKSCLLLRF-ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 61
Query: 74  RSYWRNYFEQTDGLVWVVDSSDLRRLDDCK---MELDNLLKEERLSGASLLILANKQDI 129
           R+   +Y+    G++ V D +D    ++ K    E+D    E      + L++ NK D+
Sbjct: 62  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCDL 116

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 20  LMVGLDNSGKTTIVLKINGEDTSVIS--PTLG--FNIKTVTYQKYT--LNIWDVGGQRTI 73
           L++G    GK+ ++L+   +DT   S   T+G  F I+T+     T  L IWD  GQ   
Sbjct: 10  LLIGDSGVGKSCLLLRF-ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 68
Query: 74  RSYWRNYFEQTDGLVWVVDSSDLRRLDDCK---MELDNLLKEERLSGASLLILANKQDI 129
           R+   +Y+    G++ V D +D    ++ K    E+D    E      + L++ NK D+
Sbjct: 69  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCDL 123

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	185
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	1e-100
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	2e-96
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	5e-95
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	9e-93
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	1e-91
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	2e-91
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	3e-91
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	7e-91
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	1e-90
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	7e-90
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	3e-89
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	2e-88
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	9e-88
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-82
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	4e-82
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	2e-65
2fh5_B	214	SR-beta, signal recognition particle receptor beta	4e-64
1nrj_B	218	SR-beta, signal recognition particle receptor beta	1e-54
2ged_A	193	SR-beta, signal recognition particle receptor beta	2e-51
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	9e-38
3llu_A	196	RAS-related GTP-binding protein C; structural geno	3e-37
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	6e-33
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	8e-31
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	2e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	2e-08
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	3e-08
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	6e-08
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	2e-07
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	2e-07
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	3e-07
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	4e-07
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	6e-07
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	8e-07
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	9e-07
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	1e-06
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	2e-06
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	3e-06
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	3e-06
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	4e-06
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	5e-06
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	9e-06
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	9e-06
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	9e-06
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-05
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-05
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	1e-05
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	2e-05
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	2e-05
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	2e-05
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	2e-05
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	3e-05
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	3e-05
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	4e-05
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	4e-05
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	6e-05
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	6e-05
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	6e-05
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	6e-05
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	8e-05
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	8e-05
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	8e-05
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	9e-05
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	1e-04
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	1e-04
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	1e-04
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-04
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	2e-04
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	2e-04
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	2e-04
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	2e-04
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	2e-04
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	2e-04
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	3e-04
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	3e-04
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	3e-04
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	3e-04
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	3e-04
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	4e-04
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	4e-04
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	4e-04
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	5e-04
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	5e-04
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	6e-04
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	6e-04
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	6e-04
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	6e-04
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	6e-04
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	8e-04
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	9e-04
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	9e-04
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	9e-04

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score =  286 bits (734), Expect = e-100
 Identities = 114/185 (61%), Positives = 153/185 (82%), Gaps = 1/185 (0%)

Query: 1   MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
           MGLL+I++K+K+KE+E+R+LM+GLDN+GKTTI+ K NGED   ISPTLGFNIKT+ ++ +
Sbjct: 3   MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGF 62

Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
            LNIWDVGGQ+++RSYWRNYFE TDGL+WVVDS+D +R+ DC+ EL +LL EERL+GA+L
Sbjct: 63  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 122

Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           LI ANKQD+ GAL+   I + L L+++ ++ HW+I GCSA TGE LL G DWL+ DI+SR
Sbjct: 123 LIFANKQDLPGALSCNAIQEALELDSI-RSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181

Query: 181 IYLLD 185
           ++  D
Sbjct: 182 VFTAD 186

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score =  276 bits (707), Expect = 2e-96
 Identities = 91/180 (50%), Positives = 134/180 (74%), Gaps = 2/180 (1%)

Query: 2   GLLSIIRKIKK-KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
           GLLSI+RK+K   ++E+RIL++GLDN+GKTT++ ++  ED S I+PT GFNIK+V  Q +
Sbjct: 1   GLLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGF 60

Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
            LN+WD+GGQR IR YWR+YFE TD L++V+DS+D +R ++   EL  LL+EE+LS   +
Sbjct: 61  KLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPV 120

Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           LI ANKQD+  A   +EIA+ LNL  + + R W+I  CSA TGEG+ +G +W+ +++ ++
Sbjct: 121 LIFANKQDLLTAAPASEIAEGLNLHTI-RDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score =  272 bits (699), Expect = 5e-95
 Identities = 61/179 (34%), Positives = 99/179 (55%), Gaps = 3/179 (1%)

Query: 3   LLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKI-NGEDTSVISPTLGFNIKTVTYQKYT 61
             S +   +  ++EM + +VGL  SGKTT V  I +G+    + PT+GFN++ +T    T
Sbjct: 10  HSSGLVP-RGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVT 68

Query: 62  LNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLL 121
           + +WD+GGQ   RS W  Y      +V++VD++D  +++  K EL NLL + +L G  +L
Sbjct: 69  IKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVL 128

Query: 122 ILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           +L NK+D+ GAL   E+ + +NL A+ + R       S    + +     WL+Q   SR
Sbjct: 129 VLGNKRDLPGALDEKELIEKMNLSAI-QDREICCYSISCKEKDNIDITLQWLIQHSKSR 186

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score =  267 bits (684), Expect = 9e-93
 Identities = 67/182 (36%), Positives = 106/182 (58%), Gaps = 1/182 (0%)

Query: 1   MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
           MG+L          +E ++++VGLDN+GKTTI+ + +  +    SPT+G N++ +     
Sbjct: 1   MGILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT 60

Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
              +WD+GGQ ++RS W  Y+  T+ ++ VVDS+D  R+   + EL  +L  E L  A L
Sbjct: 61  RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 120

Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           LI ANKQD+   +T  EI++ L L ++ K   W I  C A TGEGL +G +W++  +  R
Sbjct: 121 LIFANKQDVKECMTVAEISQFLKLTSI-KDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179

Query: 181 IY 182
           + 
Sbjct: 180 LE 181

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score =  264 bits (677), Expect = 1e-91
 Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 7/184 (3%)

Query: 1   MGLL-SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQK 59
            G    ++  +    K  ++L +GLDN+GKTT++  +  +  + + PT     + +    
Sbjct: 7   FGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN 66

Query: 60  YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS 119
                +D+GG    R  W++YF + +G+V++VD++D  R D+ ++ELD L     L    
Sbjct: 67  IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVP 126

Query: 120 LLILANKQDINGALTPTEIAKVLNLEAM------DKTRHWKIVGCSAYTGEGLLEGFDWL 173
            +IL NK D   A++  E+   L L         +  R  ++  CS     G LE F WL
Sbjct: 127 FVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWL 186

Query: 174 VQDI 177
            Q I
Sbjct: 187 SQYI 190

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score =  263 bits (675), Expect = 2e-91
 Identities = 82/182 (45%), Positives = 119/182 (65%), Gaps = 3/182 (1%)

Query: 1   MGLL--SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQ 58
           MG +  S+  K+    KE+RIL++GLD +GKTTI+ ++   +     PT+GFN++T++Y+
Sbjct: 1   MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYK 60

Query: 59  KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGA 118
              LN+WD+GGQ +IR YWR Y+  T  +++VVDS+D  R+     EL  +L+EE L  A
Sbjct: 61  NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDA 120

Query: 119 SLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178
           +LL+ ANKQD  GAL+ +E++K LNL  + K R W IV  SA  GEG+ EG DWL+  I 
Sbjct: 121 ALLVFANKQDQPGALSASEVSKELNLVEL-KDRSWSIVASSAIKGEGITEGLDWLIDVIK 179

Query: 179 SR 180
             
Sbjct: 180 EE 181

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score =  263 bits (674), Expect = 3e-91
 Identities = 75/184 (40%), Positives = 116/184 (63%), Gaps = 5/184 (2%)

Query: 1   MGL----LSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVT 56
           MG     L     +   ++++R+LM+GLDN+GKT+I+ +++  D     PT+G N++T+ 
Sbjct: 3   MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQ 62

Query: 57  YQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLS 116
           Y+  +  +WD+GGQ  +R YWR YF  TD +++VVDS+D  R+   K EL  LL E+ L 
Sbjct: 63  YKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELR 122

Query: 117 GASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQD 176
            + LLI ANKQD+  A +  EIA+ L + ++   R W IV  S+ TG+GL+EG DWLV+ 
Sbjct: 123 KSLLLIFANKQDLPDAASEAEIAEQLGVSSI-MNRTWTIVKSSSKTGDGLVEGMDWLVER 181

Query: 177 IASR 180
           +  +
Sbjct: 182 LREQ 185

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score =  262 bits (673), Expect = 7e-91
 Identities = 54/187 (28%), Positives = 94/187 (50%), Gaps = 11/187 (5%)

Query: 2   GLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYT 61
           G  S+++ +   +K  +++ +GLDN+GKTT++  +  +      PTL    + +T    T
Sbjct: 11  GFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70

Query: 62  LNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLL 121
              +D+GG    R  W+NY    +G+V++VD +D  RL + K ELD+L+ +E ++   +L
Sbjct: 71  FTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPIL 130

Query: 122 ILANKQDINGALTPTEIAKVLNLEAMD-----------KTRHWKIVGCSAYTGEGLLEGF 170
           IL NK D   A++   + ++  L                 R  ++  CS    +G  EGF
Sbjct: 131 ILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGF 190

Query: 171 DWLVQDI 177
            W+ Q I
Sbjct: 191 RWMAQYI 197

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score =  261 bits (669), Expect = 1e-90
 Identities = 76/168 (45%), Positives = 109/168 (64%), Gaps = 1/168 (0%)

Query: 13  KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRT 72
             +EMRIL++GLD +GKTTI+ ++   +     PT+GFN++TVTY+     +WD+GG  +
Sbjct: 4   MTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTS 63

Query: 73  IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132
           IR YWR Y+  TD +++VVDS D  R+   K EL  +L+EE L  A L++ ANKQD+  A
Sbjct: 64  IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 123

Query: 133 LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           +T +E+A  L L A+ K R W+I   SA  G GL E  +WLV+ + SR
Sbjct: 124 MTSSEMANSLGLPAL-KDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score =  259 bits (664), Expect = 7e-90
 Identities = 63/168 (37%), Positives = 102/168 (60%), Gaps = 1/168 (0%)

Query: 10  IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGG 69
           + +  +E ++++VGLDN+GKTTI+ + +  +    SPT+G N++ +        +WD+GG
Sbjct: 15  VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGG 74

Query: 70  QRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
           Q ++RS W  Y+  T+ ++ VVDS+D  R+   + EL  +L  E L  A LLI ANKQD+
Sbjct: 75  QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134

Query: 130 NGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
              +T  EI++ L L ++ K   W I  C A TGEGL +G +W++  +
Sbjct: 135 KECMTVAEISQFLKLTSI-KDHQWHIQACCALTGEGLCQGLEWMMSRL 181

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score =  258 bits (662), Expect = 3e-89
 Identities = 63/175 (36%), Positives = 100/175 (57%), Gaps = 5/175 (2%)

Query: 10  IKKKEKEMRILMVGLDNSGKTTIV--LKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDV 67
           + +  KE+ +L +GLDNSGKTTI+  LK +   +  I PT+GF+I+       +  ++D+
Sbjct: 15  VPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDM 74

Query: 68  GGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSG--ASLLILAN 125
            GQ   R+ W +Y+++   +++V+DSSD  R+   K ELD LL    +      +L  AN
Sbjct: 75  SGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFAN 134

Query: 126 KQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           K D+  A+T  +++++L LE + K + W I    A  GEGL EG DWL   I + 
Sbjct: 135 KMDLRDAVTSVKVSQLLCLENI-KDKPWHICASDAIKGEGLQEGVDWLQDQIQTV 188

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score =  256 bits (657), Expect = 2e-88
 Identities = 77/180 (42%), Positives = 113/180 (62%), Gaps = 4/180 (2%)

Query: 1   MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
            G  S+  +I  K K+MRILMVGLD +GKTTI+ K+   +     PT+GFN++TV Y+  
Sbjct: 17  RG--SLFSRIFGK-KQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 73

Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
              +WDVGGQ  IR  WR+YF+ T GL++VVDS+D  R+ +   EL  +L+E+ L  A L
Sbjct: 74  CFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVL 133

Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           L+ ANKQD+  A+  +E+   L L+ + ++R W +    A  G GL +G DWL  +++ R
Sbjct: 134 LVFANKQDMPNAMPVSELTDKLGLQHL-RSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score =  253 bits (649), Expect = 9e-88
 Identities = 74/164 (45%), Positives = 107/164 (65%), Gaps = 1/164 (0%)

Query: 17  MRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSY 76
           MRILMVGLD +GKTTI+ K+   +     PT+GFN++TV Y+  +  +WDVGGQ  IR  
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60

Query: 77  WRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPT 136
           WR+YF+ T GL++VVDS+D  R+++ + EL  +L E+ L  A LL+ ANKQD+  A+   
Sbjct: 61  WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 120

Query: 137 EIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           EI   L L ++ + R+W I    A +G+GL EG DWL   + ++
Sbjct: 121 EITDKLGLHSL-RHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score =  245 bits (627), Expect = 4e-82
 Identities = 76/167 (45%), Positives = 110/167 (65%), Gaps = 1/167 (0%)

Query: 14  EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTI 73
           +KEMRILMVGLD +GKTTI+ K+   +     PT+GFN++TV Y+  +  +WDVGGQ  I
Sbjct: 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 222

Query: 74  RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL 133
           R  WR+YF+ T GL++VVDS+D  R+++ + EL  +L E+ L  A LL+ ANKQD+  A+
Sbjct: 223 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 282

Query: 134 TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
              EI   L L ++ + R+W I    A +G+GL EG DWL   + ++
Sbjct: 283 NAAEITDKLGLHSL-RHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score =  198 bits (505), Expect = 2e-65
 Identities = 44/202 (21%), Positives = 79/202 (39%), Gaps = 28/202 (13%)

Query: 2   GLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVI-----------SPTLGF 50
           G +S I     +E   +I+  G   SGKTT +  I  +                  TL F
Sbjct: 1   GSMSTINF-ANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFF 59

Query: 51  N-----IKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKME 105
           +     I  V   K   +++ V GQ    +  +      DG+V+V DS+   RL      
Sbjct: 60  DFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAP-NRLRANAES 118

Query: 106 LDNLLKE-----ERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSA 160
           + N+ +        L    ++I  NK+D+  AL    +  V++ E       + ++   A
Sbjct: 119 MRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPE-----GKFPVLEAVA 173

Query: 161 YTGEGLLEGFDWLVQDIASRIY 182
             G+G+ E    + + + +R+ 
Sbjct: 174 TEGKGVFETLKEVSRLVLARVA 195

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score =  195 bits (498), Expect = 4e-64
 Identities = 37/168 (22%), Positives = 66/168 (39%), Gaps = 8/168 (4%)

Query: 10  IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY---TLNIWD 66
           + +K  +  +L VGL +SGKT + +++          ++  +            +L + D
Sbjct: 1   MARKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLID 60

Query: 67  VGGQRTIR-SYWRNYFEQTDGLVWVVDSSDL-RRLDDCKMELDNLLKEERLS--GASLLI 122
           + G  ++R      +      +V+VVDS+   R + D    L  +L +        SLLI
Sbjct: 61  LPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLI 120

Query: 123 LANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF 170
             NKQDI  A +   I + L  E ++  R  +    S           
Sbjct: 121 ACNKQDIAMAKSAKLIQQQLEKE-LNTLRVTRSAAPSTLDSSSTAPAQ 167

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score =  171 bits (436), Expect = 1e-54
 Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 12/178 (6%)

Query: 10  IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGG 69
           IK+K  +  I++ G  NSGKT+++  +  +       +    +    Y    + + D  G
Sbjct: 6   IKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPG 64

Query: 70  QRTIRSYWRNYFEQ----TDGLVWVVDSS-DLRRLDDCKMELDNLLKEERLS---GASLL 121
              +R    +Y +       GL+++VDS+ D ++L      L ++L     S   G  +L
Sbjct: 65  HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 124

Query: 122 ILANKQDINGALTPTEIAKVL--NLEAMDKTRHWKIVGCSAYTGE-GLLEGFDWLVQD 176
           I  NK ++  A  P++I   L   ++ + + R   +        E    E    ++Q 
Sbjct: 125 IACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQS 182

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score =  162 bits (412), Expect = 2e-51
 Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 10/149 (6%)

Query: 11  KKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQ 70
                +  I++ G  NSGKT+++  +  +       +    +    Y    + + D  G 
Sbjct: 43  GGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGH 101

Query: 71  RTIRSYWRNYFEQ----TDGLVWVVDSS-DLRRLDDCKMELDNLLKEERLS---GASLLI 122
             +R    +Y +       GL+++VDS+ D ++L      L ++L     S   G  +LI
Sbjct: 102 VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI 161

Query: 123 LANKQDINGALTPTEIAKVLNLEAMDKTR 151
             NK ++  A  P++I   L  E + K  
Sbjct: 162 ACNKSELFTARPPSKIKDALESE-IQKVI 189

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227

 Score =  129 bits (324), Expect = 9e-38
 Identities = 20/121 (16%), Positives = 48/121 (39%), Gaps = 8/121 (6%)

Query: 65  WDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEE-----RLSGAS 119
              G + ++    +   E  DG ++V ++   +R +    E  +++              
Sbjct: 107 DQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQD-EFSHIMAMTDPAFGSSGRPL 165

Query: 120 LLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179
           L++    Q     +    +A  L+L  ++    W +    A T  G L G +W+++++ S
Sbjct: 166 LVLSCISQGDVKRMPCFYLAHELHLNLLN--HPWLVQDTEAETLTGFLNGIEWILEEVES 223

Query: 180 R 180
           +
Sbjct: 224 K 224

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score =  126 bits (318), Expect = 3e-37
 Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 8/128 (6%)

Query: 9   KIKKKEKEMRILMVGLDNSGKTTIVLKI----NGEDTSVISPTLGFNIKTVTYQKY-TLN 63
            +  +  + RIL++GL  SGK++I   +    +  +T  +  T       ++   +    
Sbjct: 13  NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQ 72

Query: 64  IWDVGGQRTIRSYW---RNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
           IWD  GQ             F  T  L++V+D+ D       ++ +      +     + 
Sbjct: 73  IWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNF 132

Query: 121 LILANKQD 128
            +  +K D
Sbjct: 133 EVFIHKVD 140

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score =  118 bits (297), Expect = 6e-33
 Identities = 35/182 (19%), Positives = 70/182 (38%), Gaps = 15/182 (8%)

Query: 18  RILMVGLDNSGKTTIV----LKINGEDTSVISPTLGFNIKTVTYQKY-TLNIWDVGGQ-- 70
           ++L++G   SGK+++        +  DT  +  T+      + +    TLN+WD GGQ  
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV 64

Query: 71  ---RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLS-GASLLILANK 126
                      + F+    L+ V D      L D ++    L +  + S  A + +L +K
Sbjct: 65  FMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHK 124

Query: 127 QDINGALTPTE----IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIY 182
            D+       E    + K L+  + +      I   ++   E L + +  +V  +   + 
Sbjct: 125 MDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSLIPNMS 184

Query: 183 LL 184
             
Sbjct: 185 NH 186

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score =  112 bits (282), Expect = 8e-31
 Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 8/120 (6%)

Query: 66  DVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEE-----RLSGASL 120
             G + ++    +   E  DG ++V ++   +R +    E  +++              L
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQD-EFSHIMAMTDPAFGSSGRPLL 251

Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           ++    Q     +    +A  L+L  ++    W +    A T  G L G +W+++++ S+
Sbjct: 252 VLSCISQGDVKRMPCFYLAHELHLNLLN--HPWLVQDTEAETLTGFLNGIEWILEEVESK 309

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 82.8 bits (204), Expect = 2e-19
 Identities = 28/177 (15%), Positives = 59/177 (33%), Gaps = 24/177 (13%)

Query: 19  ILMVGLDNSGKTTIV----LKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR 74
           +L++G+   GK++I       +   DT  +  T   +++  +     L + ++ GQ    
Sbjct: 2   VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLI-DLAVMELPGQLNYF 60

Query: 75  SYW---RNYFEQTDGLVWVVDSS-----DLRRLDDCKMELDNLLKEERLSGASLLILANK 126
                    F+    LV+V+DS       +  L             +     ++ +L +K
Sbjct: 61  EPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYA-----YKVNPSINIEVLIHK 115

Query: 127 QDINGALTPTE----IAKVLNLEAMDKTRHWKIVGCSA--YTGEGLLEGFDWLVQDI 177
            D        +    I +    E ++       V           + E F  +VQ +
Sbjct: 116 VDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDHSIYEAFSRIVQKL 172

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 2e-08
 Identities = 30/168 (17%), Positives = 60/168 (35%), Gaps = 54/168 (32%)

Query: 7   IRKIKKKEKEMR----ILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTL 62
             K+++   E+R    +L+ G+  SGKT   + ++   +  +   + F I          
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKT--WVALDVCLSYKVQCKMDFKI---------- 184

Query: 63  NIW-DVGGQRTIRS--------YWR---NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLL 110
             W ++    +  +         ++   N+  ++D       S+   R+   + EL  LL
Sbjct: 185 -FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH-----SSNIKLRIHSIQAELRRLL 238

Query: 111 KEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGC 158
           K +      LL+L N Q+          AK     A +       + C
Sbjct: 239 KSKPYE-NCLLVLLNVQN----------AKA--WNAFN-------LSC 266

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 34/178 (19%), Positives = 69/178 (38%), Gaps = 13/178 (7%)

Query: 16  EMRILMVGLDNSGKTTIVLK-INGE--DTSVISPTLG--FNIKTVTY-----QKYTLNIW 65
            M++++VG   SGKTT++ + +  +  D  + S T+G       +       +   LN+W
Sbjct: 2   RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61

Query: 66  DVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR-RLDDCKMELDNLLKEERLSGASLLILA 124
           D  G+    S   ++  Q    + V D S  +  +D  K  L N+  + R S + ++++ 
Sbjct: 62  DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNI--KARASSSPVILVG 119

Query: 125 NKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIY 182
              D++           +  E ++K     I            +    L + I +   
Sbjct: 120 THLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESL 177

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 35/176 (19%), Positives = 60/176 (34%), Gaps = 25/176 (14%)

Query: 19  ILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVT--YQKYTLNIWDVGGQ--- 70
           +++VG   +GKTT V + + GE       TLG   +             N+WD  GQ   
Sbjct: 18  LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 77

Query: 71  RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130
             +R     Y+ Q    + + D +      +      +L          +++  NK DI 
Sbjct: 78  GGLRD---GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL--VRVCENIPIVLCGNKVDIK 132

Query: 131 GALTPTE---IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIYL 183
                 +     +  NL+  D          SA +     + F WL + +     L
Sbjct: 133 DRKVKAKSIVFHRKKNLQYYD---------ISAKSNYNFEKPFLWLARKLIGDPNL 179

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 38/174 (21%), Positives = 75/174 (43%), Gaps = 16/174 (9%)

Query: 18  RILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQ-- 70
           +I++ G    GK++ +++    E    IS TLG  F +KT+    ++  L +WD  GQ  
Sbjct: 30  KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89

Query: 71  -RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQD 128
            R+I +SY+R      DG++ + D +  +   + +  +D  +++       ++++ NK D
Sbjct: 90  FRSIAKSYFRK----ADGVLLLYDVTCEKSFLNIREWVDM-IEDAAHETVPIMLVGNKAD 144

Query: 129 INGALTPTEIAKVLNLEAMDKTRHWKI--VGCSAYTGEGLLEGFDWLVQDIASR 180
           I           V           +       SA  G  ++E    L +++  R
Sbjct: 145 IRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 28/183 (15%), Positives = 70/183 (38%), Gaps = 30/183 (16%)

Query: 15  KEMRILMVGLDNSGKTTIVLKI-NGEDTSVISPTLGFNIKTVTY------------QKYT 61
           +E+++ ++G   +GKT+++ ++         S T G N+ T               ++  
Sbjct: 40  QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECL 99

Query: 62  LNIWDVGGQRTIRSYWRNYFEQTDG--LVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS 119
            + WD GGQ  + +  + +  ++    L+      D R   +    L ++  E+    + 
Sbjct: 100 FHFWDFGGQEIMHASHQFFMTRSSVYMLLL-----DSRTDSNKHYWLRHI--EKYGGKSP 152

Query: 120 LLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179
           ++++ NK D      P+   +   +         +    S   G+G+      + + + S
Sbjct: 153 VIVVMNKID----ENPSYNIEQKKINERFPAIENRFHRISCKNGDGVES----IAKSLKS 204

Query: 180 RIY 182
            + 
Sbjct: 205 AVL 207

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 37/173 (21%), Positives = 72/173 (41%), Gaps = 11/173 (6%)

Query: 15  KEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTYQKYT--LNIWDVGG 69
             ++++++G    GK++IVL+ ++ +      PT+G  F  + VT  ++T    IWD  G
Sbjct: 2   TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61

Query: 70  QRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
           Q    S    Y+      + V D +  +     +  +   L E+      + ++ NK D 
Sbjct: 62  QERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKE-LHEQASKDIIIALVGNKIDX 120

Query: 130 NGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIY 182
                  ++A+    E + + +       SA TGE + + F      I  +I 
Sbjct: 121 LQEGGERKVARE-EGEKLAEEKGLLFFETSAKTGENVNDVF----LGIGEKIP 168

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 27/177 (15%)

Query: 18  RILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQ-- 70
           +IL++G    GK+ ++++ +  +       T+G  F IKTV    +K  L IWD  GQ  
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64

Query: 71  -RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQD 128
            RTI  +Y+R       G++ V D +D R   + K      + E     A LL++ NK D
Sbjct: 65  FRTITTAYYRG----AMGIILVYDITDERTFTNIKQWFKT-VNEHANDEAQLLLVGNKSD 119

Query: 129 INGALTPTE----IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
           +   +   +    +AK L +  ++          SA   + + E F  L + I  +I
Sbjct: 120 METRVVTADQGEALAKELGIPFIE---------SSAKNDDNVNEIFFTLAKLIQEKI 167

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 46.8 bits (112), Expect = 4e-07
 Identities = 34/172 (19%), Positives = 72/172 (41%), Gaps = 19/172 (11%)

Query: 15  KEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLGFN-IKTVTY--QKYTLNIWDVGGQ 70
            E ++++VG    GK+ + ++ I         PT+  +  K V    +   L+I D  GQ
Sbjct: 20  TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 79

Query: 71  ---RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127
                +R     Y    +G + V   ++ +   D  +  + + + +      ++++ NK 
Sbjct: 80  EEYSAMRD---QYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKC 136

Query: 128 DINGALTPTEIAKVLNLEAMDKTRHWKI--VGCSAYTGEGLLEGFDWLVQDI 177
           D+           V   +A +  + + I  +  SA T +G+ + F  LV++I
Sbjct: 137 DL-------PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 46.5 bits (111), Expect = 6e-07
 Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 26/181 (14%)

Query: 18  RILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQ-- 70
           +IL++G    GK++++L+  +      ++ T+G  F +KT++    K  L IWD  GQ  
Sbjct: 17  KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76

Query: 71  -RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQD 128
            RT+  SY+R       G++ V D +           L+ L      +    +++ NK D
Sbjct: 77  FRTLTPSYYRG----AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID 132

Query: 129 INGALTPTE----IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIYLL 184
                         A+  ++  ++          SA T +G+   F+ LV+ I     L 
Sbjct: 133 KENREVDRNEGLKFARKHSMLFIE---------ASAKTCDGVQCAFEELVEKIIQTPGLW 183

Query: 185 D 185
           +
Sbjct: 184 E 184

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 46.0 bits (110), Expect = 8e-07
 Identities = 37/172 (21%), Positives = 74/172 (43%), Gaps = 19/172 (11%)

Query: 15  KEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLGFN-IKTVTY--QKYTLNIWDVGGQ 70
            E ++++VG D  GK+ + ++ I         PT+  +  K V    +   L+I D  GQ
Sbjct: 3   TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 62

Query: 71  ---RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127
                +R     Y    +G + V   ++ +  +D     + + + +      ++++ NK 
Sbjct: 63  EEYSAMRD---QYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKC 119

Query: 128 DINGALTPTEIAKVLNLEAMDKTRHWKI--VGCSAYTGEGLLEGFDWLVQDI 177
           D+      T+       +A D  R + I  +  SA T +G+ + F  LV++I
Sbjct: 120 DLPSRTVDTK-------QAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 46.0 bits (110), Expect = 9e-07
 Identities = 32/176 (18%), Positives = 64/176 (36%), Gaps = 18/176 (10%)

Query: 11  KKKEKEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG-FNIKTVTY--QKYTLNIWD 66
               +  ++++VG    GK+ + ++ I     S   PT+     K  +       L+I D
Sbjct: 4   PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILD 63

Query: 67  VGGQ---RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLIL 123
             GQ     +R     Y     G + V   +D +  ++       +L+ +      ++++
Sbjct: 64  TAGQEEFGAMR---EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLV 120

Query: 124 ANKQDINGALTPTEIAKVLNLEAMDKTRHWKI--VGCSAYTGEGLLEGFDWLVQDI 177
            NK D+          +V   EA        +     SA     + E F+ LV+ +
Sbjct: 121 GNKADL------ESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 32/172 (18%), Positives = 68/172 (39%), Gaps = 18/172 (10%)

Query: 15  KEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG-FNIKTVTY--QKYTLNIWDVGGQ 70
           +E +++++G    GK+ + ++ + G       PT+  F  K +        L I D  G 
Sbjct: 2   REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61

Query: 71  ---RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127
               ++R     Y +   G + V    + +   D K   D +++ +R     ++++ NK 
Sbjct: 62  EQFASMR---DLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKV 118

Query: 128 DINGALTPTEIAKVLNLEAMDKTRHWKI--VGCSAYTGEGLLEGFDWLVQDI 177
           D+          +V + E       W    +  SA +   + E F  +V+ +
Sbjct: 119 DL------ESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 27/178 (15%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQ- 70
           M+IL++G    GK+ ++++ +  +       T+G  F IKTV    +K  L +WD  GQ 
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80

Query: 71  --RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127
             RTI  +Y+R       G++ V D +D R   + K      + E     A LL++ NK 
Sbjct: 81  RFRTITTAYYRG----AMGIILVYDVTDERTFTNIKQWFKT-VNEHANDEAQLLLVGNKS 135

Query: 128 DINGALTPTE----IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
           D+   +   +    +AK L +  ++          SA   + + E F  L + I  +I
Sbjct: 136 DMETRVVTADQGEALAKELGIPFIE---------SSAKNDDNVNEIFFTLAKLIQEKI 184

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 15/169 (8%)

Query: 15  KEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKTVTY--QKYTLNIWDVGGQR 71
            E+++ +VG  +SGK+ +V + + G      SP  G   K +    Q Y L I D GG  
Sbjct: 19  PELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPP 78

Query: 72  TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131
            ++     +    D +V+V    D             L      S   ++++  +     
Sbjct: 79  ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDA--- 130

Query: 132 ALTPTEIAKVLNLEAMDKTRHWKIVG---CSAYTGEGLLEGFDWLVQDI 177
            ++      + +  A   +   K        A  G  +   F  + Q +
Sbjct: 131 -ISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 33/179 (18%), Positives = 61/179 (34%), Gaps = 27/179 (15%)

Query: 19  ILMVGLDNSGKTTIVLK-INGEDTSVISPTLG---FNIKTVTY--QKYTLNIWDVGGQ-- 70
           I ++G    GKTT + + ++G      + T+G     +  +         N+WD  GQ  
Sbjct: 14  ICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEK 73

Query: 71  -RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
              ++     Y+    G +   D +      +    +    +    + A +++ ANK DI
Sbjct: 74  KAVLKD---VYYIGASGAILFFDVTSRITCQNLARWVKE-FQAVVGNEAPIVVCANKIDI 129

Query: 130 -NGALTPTEIAKVL----NLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIYL 183
            N      ++   +    N E  +          SA T       F  L +    R  L
Sbjct: 130 KNRQKISKKLVMEVLKGKNYEYFE---------ISAKTAHNFGLPFLHLARIFTGRPDL 179

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 44.1 bits (105), Expect = 4e-06
 Identities = 41/178 (23%), Positives = 75/178 (42%), Gaps = 28/178 (15%)

Query: 18  RILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQ-- 70
           ++L++G  + GKT+ + +  +   T     T+G  F +KTV    ++  L IWD  GQ  
Sbjct: 24  KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83

Query: 71  -RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQD 128
            RTI  +Y+R       G + + D ++       +      +K      A ++++ NK D
Sbjct: 84  YRTITTAYYRG----AMGFLLMYDIANQESFAAVQDWATQ-IKTYSWDNAQVILVGNKCD 138

Query: 129 INGA-LTPTE----IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
           +    + P E    +A  L  E  +          SA     + + F+ LV  I  ++
Sbjct: 139 LEDERVVPAEDGRRLADDLGFEFFE---------ASAKENINVKQVFERLVDVICEKM 187

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 43.6 bits (104), Expect = 5e-06
 Identities = 35/173 (20%), Positives = 72/173 (41%), Gaps = 21/173 (12%)

Query: 15  KEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGG 69
            E ++++VG    GK+ + ++ I         PT+   +  K V    +   L+I D  G
Sbjct: 2   TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAG 60

Query: 70  Q---RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANK 126
           Q     +R     Y    +G + V   ++ +  +D     + + + +      ++++ NK
Sbjct: 61  QEEYSAMRD---QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117

Query: 127 QDINGALTPTEIAKVLNLEAMDKTRHWKI--VGCSAYTGEGLLEGFDWLVQDI 177
            D+      +        +A D  R + I  +  SA T +G+ + F  LV++I
Sbjct: 118 SDLAARTVESR-------QAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402

 Score = 44.0 bits (103), Expect = 9e-06
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 10/94 (10%)

Query: 46  PTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR-------- 97
            T G         K   +++DVGGQR  R  W   F     +++VV SS           
Sbjct: 203 LTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQ 262

Query: 98  --RLDDCKMELDNLLKEERLSGASLLILANKQDI 129
             RL +      ++     L   S+++  NKQD+
Sbjct: 263 TNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 43.4 bits (103), Expect = 9e-06
 Identities = 40/179 (22%), Positives = 73/179 (40%), Gaps = 28/179 (15%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQ- 70
            ++L++G    GK+ ++L+  +   T     T+G  F I+T+    +   L IWD  GQ 
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93

Query: 71  --RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127
             RTI  SY+R       G++ V D +D    ++ K  L   +        + L++ NK 
Sbjct: 94  RFRTITSSYYRG----AHGIIVVYDVTDQESFNNVKQWLQE-IDRYASENVNKLLVGNKC 148

Query: 128 DINGA-LTPTE----IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
           D+    +         A  L +  ++          SA     + + F  +  +I  R+
Sbjct: 149 DLTTKKVVDYTTAKEFADSLGIPFLE---------TSAKNATNVEQSFMTMAAEIKKRM 198

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 43.4 bits (103), Expect = 9e-06
 Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 19/175 (10%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQ- 70
           ++++++G    GKT+++ +  +         T+G  F IKTV    +K  L IWD  GQ 
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86

Query: 71  --RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127
              +I  +Y+R+      G++ V D +     DD    +   + +     A LL++ NK 
Sbjct: 87  RFNSITSAYYRS----AKGIILVYDITKKETFDDLPKWMKM-IDKYASEDAELLLVGNKL 141

Query: 128 DINGA-LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
           D         +  +     A  +    +    SA     + E F  LV DI  ++
Sbjct: 142 DCETDREITRQQGEKF---A-QQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 28/179 (15%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQ- 70
            ++L++G    GKT ++ +       S    T+G  F I+T+    ++  L IWD  GQ 
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 71  --RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127
             RTI  +Y+R       G++ V D ++ +  D+ +  + N ++E   +    +IL NK 
Sbjct: 69  RFRTITTAYYRG----AMGIMLVYDITNEKSFDNIRNWIRN-IEEHASADVEKMILGNKC 123

Query: 128 DINGA-LTPTE----IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
           D+N       E    +A    ++ M+          SA     +   F  L +DI +++
Sbjct: 124 DVNDKRQVSKERGEKLALDYGIKFME---------TSAKANINVENAFFTLARDIKAKM 173

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 28/177 (15%)

Query: 19  ILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQ--- 70
           +L++G  + GKT+ + +  +   T     T+G  F +KTV    ++  L IWD  GQ   
Sbjct: 26  LLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY 85

Query: 71  RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
           RTI  +Y+R       G + + D ++    +  +      +K      A ++++ NK D+
Sbjct: 86  RTITTAYYRG----AMGFILMYDITNEESFNAVQDWATQ-IKTYSWDNAQVILVGNKCDM 140

Query: 130 NGA-LTPTE----IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
               + PTE    +A+ L  +  +          SA     + + F+ LV  I  ++
Sbjct: 141 EEERVVPTEKGQLLAEQLGFDFFE---------ASAKENISVRQAFERLVDAICDKM 188

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 34/181 (18%), Positives = 67/181 (37%), Gaps = 29/181 (16%)

Query: 6   IIRKIKKKEKEMR-ILMVGLDNSGKTTIVLKINGEDTSVISP---TLGFNIKTVTYQKYT 61
           +++ +   + E+  +++ G  N GK+T++  +      + S    T G N+       + 
Sbjct: 156 VLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFR 215

Query: 62  LNIWDVGGQRTIRSYWRNYFEQ---------TDGLVWVVDSSDLRRLDDCKMELD---NL 109
             I D  G        RN  E+          + ++++ D S+      C   L+   +L
Sbjct: 216 YQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSE-----HCGFPLEEQIHL 270

Query: 110 LKE--ERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL 167
            +E          L++ NK D+        I +   LE   K +    +  SA  G G+ 
Sbjct: 271 FEEVHGEFKDLPFLVVINKIDV---ADEENIKR---LEKFVKEKGLNPIKISALKGTGID 324

Query: 168 E 168
            
Sbjct: 325 L 325

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 30/180 (16%), Positives = 66/180 (36%), Gaps = 30/180 (16%)

Query: 19  ILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQ--- 70
           ++++G    GK++++ + +  +  + +  T+G  F  K +       T+ IWD  GQ   
Sbjct: 10  VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF 69

Query: 71  RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLK---EERLSGASLLILANK 126
           R++   ++R     +D  +      D +   +        +     +       +IL NK
Sbjct: 70  RSLRTPFYRG----SDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNK 125

Query: 127 QDINGALTPTEIAKVL-----NLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
            DI+     TE A+       +    +          SA     +   F+  V+ + +  
Sbjct: 126 IDISERQVSTEEAQAWCRDNGDYPYFE---------TSAKDATNVAAAFEEAVRRVLATE 176

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 38/178 (21%), Positives = 77/178 (43%), Gaps = 32/178 (17%)

Query: 19  ILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTYQKYT--LNIWDVGGQ--- 70
           ++ +G  + GKT+++ + +     +    T+G  F  KT+  +  T  L +WD  G    
Sbjct: 19  LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERF 78

Query: 71  RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
           R++  SY R+    +   V V D +++         +D+ ++ ER S   ++++ NK D+
Sbjct: 79  RSLIPSYIRD----STVAVVVYDITNVNSFQQTTKWIDD-VRTERGSDVIIMLVGNKTDL 133

Query: 130 NGA-LTPTE----IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIY 182
                   E     AK LN+  ++          SA  G  + + F    + +A+ + 
Sbjct: 134 ADKRQVSIEEGERKAKELNVMFIE---------TSAKAGYNVKQLF----RRVAAALP 178

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 33/190 (17%), Positives = 70/190 (36%), Gaps = 19/190 (10%)

Query: 1   MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG-FNIKTVTY- 57
           +G ++      +     ++++VG    GK+ + ++           PT+    +K     
Sbjct: 3   LGSMATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEID 62

Query: 58  -QKYTLNIWDVGGQ---RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEE 113
            Q   L++ D  GQ     +R     Y    DG + V   +D    +        +L+ +
Sbjct: 63  NQWAILDVLDTAGQEEFSAMRE---QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK 119

Query: 114 RLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKI--VGCSAYTGE-GLLEGF 170
                 ++++ANK D+        + KV   +  +    + I  +  SA      + + F
Sbjct: 120 DRESFPMILVANKVDL------MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 173

Query: 171 DWLVQDIASR 180
             LV+ I  +
Sbjct: 174 HDLVRVIRQQ 183

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 10/94 (10%)

Query: 46  PTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL--------- 96
            T G      T++     ++DVGGQR+ R  W + FE    +++ V  SD          
Sbjct: 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 238

Query: 97  -RRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
             R+ +     D++   +  +  S+++  NK+D+
Sbjct: 239 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 28/179 (15%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTYQKYT--LNIWDVGGQ- 70
            + L++G   +GK+ ++ + I  +     + T+G  F  + V     T  L IWD  GQ 
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85

Query: 71  --RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127
             R++ RSY+R       G + V D +     +     L +  +        +++  NK+
Sbjct: 86  RFRSVTRSYYRG----AAGALLVYDITSRETYNSLAAWLTD-ARTLASPNIVVILCGNKK 140

Query: 128 DINGA-LTPTE----IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
           D++             A+   L  ++          SA TGE + E F    + I ++I
Sbjct: 141 DLDPEREVTFLEASRFAQENELMFLE---------TSALTGENVEEAFLKCARTILNKI 190

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 41.4 bits (98), Expect = 3e-05
 Identities = 41/181 (22%), Positives = 81/181 (44%), Gaps = 32/181 (17%)

Query: 19  ILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTYQKYT--LNIWDVGGQ--- 70
           ++ +G  + GKT+++ + +     +    T+G  F  KT+  +  T  L +WD  GQ   
Sbjct: 17  LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 76

Query: 71  RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
           R++  SY R+    +   V V D ++          +D+ ++ ER S   ++++ NK D+
Sbjct: 77  RSLIPSYIRD----STVAVVVYDITNTNSFHQTSKWIDD-VRTERGSDVIIMLVGNKTDL 131

Query: 130 NGA-LTPTE----IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIYLL 184
           +      TE     AK LN+  ++          SA  G  + + F    + +A+ +  +
Sbjct: 132 SDKRQVSTEEGERKAKELNVMFIE---------TSAKAGYNVKQLF----RRVAAALPGM 178

Query: 185 D 185
           D
Sbjct: 179 D 179

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 18/182 (9%)

Query: 5   SIIRKIKKKEKEMRILMVGLDNSGKTT-IVLKINGEDTSVISPTLGFN---IKTVTYQKY 60
           S +  +  + + ++ ++VG    GKT  ++            PT+  N      V  +  
Sbjct: 19  SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPV 78

Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKE--ERLSGA 118
            L +WD  GQ          + QTD  +           ++ +        E        
Sbjct: 79  NLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVR---AKWYPEVRHHCPNT 135

Query: 119 SLLILANKQD------INGALTPTEIAKVLNLEAMDKTRHWKIVG---CSAYTGEGLLEG 169
            ++++  K D          L   ++  +   + +   +    V    CSA T  GL   
Sbjct: 136 PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 195

Query: 170 FD 171
           FD
Sbjct: 196 FD 197

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 40/178 (22%), Positives = 75/178 (42%), Gaps = 28/178 (15%)

Query: 18  RILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQ-- 70
           +IL++G  + GKT+ + +  +   T     T+G  F +KT+    ++  L IWD  G   
Sbjct: 10  KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69

Query: 71  -RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQD 128
            RTI  +Y+R       G + + D ++    +  +      +K      A +L++ NK D
Sbjct: 70  YRTITTAYYRG----AMGFILMYDITNEESFNAVQDWSTQ-IKTYSWDNAQVLLVGNKCD 124

Query: 129 INGA-LTPTE----IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
           +    +  +E    +A  L  E  +          SA     + + F+ LV  I  ++
Sbjct: 125 MEDERVVSSERGRQLADHLGFEFFE---------ASAKDNINVKQTFERLVDVICEKM 173

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327

 Score = 41.6 bits (97), Expect = 6e-05
 Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 10/94 (10%)

Query: 46  PTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL--------- 96
           PT G        Q     + DVGGQR+ R  W + FE    ++++V  S+          
Sbjct: 153 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDN 212

Query: 97  -RRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
             R+++ K     ++       +S+++  NK+D+
Sbjct: 213 ENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 40.6 bits (96), Expect = 6e-05
 Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 29/179 (16%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQ- 70
            ++L++G    GK++++L+  +   +     T+G  F I+TV    +K  L IWD  GQ 
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69

Query: 71  --RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127
             RTI  +Y+R     T G++ V D +      + K  L  +   +       +++ NK 
Sbjct: 70  RFRTITSTYYRG----THGVIVVYDVTSAESFVNVKRWLHEI--NQNCDDVCRILVGNKN 123

Query: 128 DINGA-LTPTE----IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
           D     +  TE     A  + ++  +          SA     + E F+ + + +    
Sbjct: 124 DDPERKVVETEDAYKFAGQMGIQLFE---------TSAKENVNVEEMFNCITELVLRAK 173

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 28/179 (15%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQ- 70
            ++L++G    GK+ ++L+  +   T+    T+G  F IKTV    +   L IWD  GQ 
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68

Query: 71  --RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127
             RTI  SY+R     + G++ V D +D    +  KM L   +     S    L++ NK 
Sbjct: 69  RFRTITSSYYRG----SHGIIIVYDVTDQESFNGVKMWLQE-IDRYATSTVLKLLVGNKC 123

Query: 128 DINGA-LTPTE----IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
           D+    +   +     A    +  ++          SA     + + F  + + I   +
Sbjct: 124 DLKDKRVVEYDVAKEFADANKMPFLE---------TSALDSTNVEDAFLTMARQIKESM 173

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 40.6 bits (96), Expect = 6e-05
 Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 28/179 (15%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTYQKYT--LNIWDVGGQ- 70
            + L++G   +GK+ ++ + I  +     + T+G  F  K +        L IWD  GQ 
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70

Query: 71  --RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127
             R++ RSY+R       G + V D +     +     L +  +        +++  NK+
Sbjct: 71  RFRSVTRSYYRG----AAGALLVYDITSRETYNALTNWLTD-ARMLASQNIVIILCGNKK 125

Query: 128 DING--ALTPTE---IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
           D++    +T  E    A+   L  ++          SA TGE + E F    + I ++I
Sbjct: 126 DLDADREVTFLEASRFAQENELMFLE---------TSALTGENVEEAFVQCARKILNKI 175

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 30/179 (16%), Positives = 66/179 (36%), Gaps = 20/179 (11%)

Query: 12  KKEKEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG-FNIKTVTY--QKYTLNIWDV 67
           ++  + R+++ G    GK+++VL+ + G       PT+     + ++      TL I D 
Sbjct: 4   EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDT 63

Query: 68  GGQ---RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLK-EERLSGASLLIL 123
            G      ++        +    + V   +  + L++       +++ +  +    ++++
Sbjct: 64  TGSHQFPAMQR---LSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLV 120

Query: 124 ANKQDINGALTPTEIAKVLNLEAMDKTRHWKI--VGCSAYTGEGLLEGFDWLVQDIASR 180
            NK D       T        EA    + WK   +  SA     + E F  L+     R
Sbjct: 121 GNKCDETQREVDTR-------EAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRR 172

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 40/179 (22%), Positives = 73/179 (40%), Gaps = 28/179 (15%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQ- 70
            ++L++G    GK+ ++L+  +   T     T+G  F I+T+    +   L IWD  GQ 
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76

Query: 71  --RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127
             RTI  SY+R       G++ V D +D    ++ K  L   +        + L++ NK 
Sbjct: 77  RFRTITSSYYRG----AHGIIVVYDVTDQESFNNVKQWLQE-IDRYASENVNKLLVGNKC 131

Query: 128 DINGA-LTPTE----IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
           D+    +         A  L +  ++          SA     + + F  +  +I  R+
Sbjct: 132 DLTTKKVVDYTTAKEFADSLGIPFLE---------TSAKNATNVEQSFMTMAAEIKKRM 181

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 40.2 bits (95), Expect = 8e-05
 Identities = 31/175 (17%), Positives = 68/175 (38%), Gaps = 20/175 (11%)

Query: 13  KEKEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDV 67
           + K  +I ++G  + GK+++ ++ + G+      PT+   F  K +T   Q+Y L + D 
Sbjct: 3   QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDT 61

Query: 68  GGQ---RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILA 124
            GQ            Y    +G + V   + ++  +  K+    LL         ++++ 
Sbjct: 62  AGQDEYSIFPQ---TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVG 118

Query: 125 NKQDINGALTPTEIAKVLNLEAMDKTRHWKI--VGCSAYTGEGLLEGFDWLVQDI 177
           NK+D+           +   E       W    +  SA   +  ++ F  ++ + 
Sbjct: 119 NKKDL------HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 167

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 40.3 bits (95), Expect = 9e-05
 Identities = 38/179 (21%), Positives = 71/179 (39%), Gaps = 28/179 (15%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQ- 70
            +I+++G    GKT +V +   G        T+G  F IKTV    +K  L IWD  GQ 
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86

Query: 71  --RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127
             R+I +SY+R+     + L+   D +           L   +++   +    +++ NK 
Sbjct: 87  RFRSITQSYYRS----ANALILTYDITCEESFRCLPEWLRE-IEQYASNKVITVLVGNKI 141

Query: 128 DINGA-LTPTEIAKVL----NLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
           D+        + A+      ++  ++          SA   + + + F  L   + S  
Sbjct: 142 DLAERREVSQQRAEEFSEAQDMYYLE---------TSAKESDNVEKLFLDLACRLISEA 191

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 38/177 (21%), Positives = 73/177 (41%), Gaps = 20/177 (11%)

Query: 11  KKKEKEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIW 65
           +      +++MVG    GK+ + L+ +  E      PT    +  K V    ++  ++I 
Sbjct: 9   QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDIL 67

Query: 66  DVGGQ---RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLI 122
           D  GQ     IR    NYF   +G + V   +++          + +L+ +       L+
Sbjct: 68  DTAGQEDYAAIRD---NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL 124

Query: 123 LANKQDINGALTPTEIAKVLNLEAMDKTRHWKI--VGCSAYTGEGLLEGFDWLVQDI 177
           + NK D+       +  +V   EA ++   W +  V  SA T   + + F  L+++I
Sbjct: 125 VGNKSDL------EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 18/173 (10%)

Query: 14  EKEMRILMVGLDNSGKTT-IVLKINGEDTSVISPTLGFN---IKTVTYQKYTLNIWDVGG 69
            + ++ ++VG    GKT  ++            PT+  N      V  +   L +WD  G
Sbjct: 3   PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 62

Query: 70  QRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEER--LSGASLLILANKQ 127
           Q          + QTD  +           ++ +        E R       ++++  K 
Sbjct: 63  QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVR---AKWYPEVRHHCPNTPIILVGTKL 119

Query: 128 D------INGALTPTEIAKVLNLEAMDKTRHWKIVG---CSAYTGEGLLEGFD 171
           D          L   ++  +   + +   +    V    CSA T  GL   FD
Sbjct: 120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 172

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 10/99 (10%)

Query: 41  TSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR--- 97
           T+ +       +           ++DVGGQR  R  W + FE    +++    S+     
Sbjct: 164 TTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTL 223

Query: 98  -------RLDDCKMELDNLLKEERLSGASLLILANKQDI 129
                  R+ + K   D +LK+      S ++  NK DI
Sbjct: 224 FEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 262

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 35/175 (20%), Positives = 67/175 (38%), Gaps = 28/175 (16%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTYQKYT--LNIWDVGGQ- 70
            + +++G    GK+ ++ +    +  +    T+G  F  + +        L IWD  GQ 
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75

Query: 71  --RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127
             R + RSY+R       G + V D +     +     L +  +        ++++ NK 
Sbjct: 76  RFRAVTRSYYRG----AAGALMVYDITRRSTYNHLSSWLTD-ARNLTNPNTVIILIGNKA 130

Query: 128 DING--ALTPTE---IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
           D+     +T  E    A+   L  ++          SA TGE + + F    + I
Sbjct: 131 DLEAQRDVTYEEAKQFAEENGLLFLE---------ASAKTGENVEDAFLEAAKKI 176

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 14/119 (11%)

Query: 19  ILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQ--- 70
           ++++G    GKT++VL+    +       TLG  F  K +    ++  L IWD  GQ   
Sbjct: 9   VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF 68

Query: 71  RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQD 128
             +   Y+R+    ++G + V D +D       K  +   L++   +   L I+ NK D
Sbjct: 69  HALGPIYYRD----SNGAILVYDITDEDSFQKVKNWVKE-LRKMLGNEICLCIVGNKID 122

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 42/177 (23%), Positives = 79/177 (44%), Gaps = 23/177 (12%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQ- 70
            ++++VG  + GKT +V +   G  +     T+G  F +KT+    ++  L IWD  GQ 
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89

Query: 71  --RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127
             RTI +SY+R+     +G +   D +           +++ +++   S    L++ NK 
Sbjct: 90  RFRTITQSYYRS----ANGAILAYDITKRSSFLSVPHWIED-VRKYAGSNIVQLLIGNKS 144

Query: 128 DINGALTPTEIAKVLNLEAMDKTRHWKIVG---CSAYTGEGLLEGFDWLVQDIASRI 181
           D+      +E+ +V   EA     H+ I+     SA     + E F  +  ++  R 
Sbjct: 145 DL------SELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRH 195

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 33/192 (17%), Positives = 63/192 (32%), Gaps = 41/192 (21%)

Query: 2   GLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLGFN---IKTVTY 57
           G +S  R IK        + VG    GKT +++   +    +   PT+  N      V  
Sbjct: 1   GSMSASRFIK-------CVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNG 53

Query: 58  QKYTLNIWDVGGQ---RTIRSYWRNYFEQTDG--LVWVVDSSDLRRLDDCKMELDNLLKE 112
               L +WD  GQ     +R      +   D   L + + S             +N+ K+
Sbjct: 54  ATVNLGLWDTAGQEDYNRLRPL---SYRGADVFILAFSLISKA---------SYENVSKK 101

Query: 113 ------ERLSGASLLILANKQDI----NGALTPTEIAKVLNLEAMDKTRHWKIVG---CS 159
                     G  ++++  K D+       +       +  ++  +  +         CS
Sbjct: 102 WIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECS 161

Query: 160 AYTGEGLLEGFD 171
           + + E +   FD
Sbjct: 162 SKSQENVKGVFD 173

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 31/173 (17%), Positives = 65/173 (37%), Gaps = 23/173 (13%)

Query: 19  ILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQ--- 70
           +++VG    GK++++ +   G  T     T+G  F  + +    +   L +WD  GQ   
Sbjct: 8   MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF 67

Query: 71  RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
             I ++Y+R         V V  ++D    +      + +     +      ++ NK D+
Sbjct: 68  DAITKAYYRG----AQACVLVFSTTDRESFEAISSWREKV--VAEVGDIPTALVQNKIDL 121

Query: 130 NGALTPTEIAKVLNLEAMDKTRHWKI--VGCSAYTGEGLLEGFDWLVQDIASR 180
                  + + + N EA    +  K+     S      + E F +L +    +
Sbjct: 122 ------LDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 10/95 (10%)

Query: 45  SPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR------- 97
            PT G +      +     + DVGGQR+ R  W   F+    ++++V SS+         
Sbjct: 186 RPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDR 245

Query: 98  ---RLDDCKMELDNLLKEERLSGASLLILANKQDI 129
              RL +     + ++     S  S+++  NK D+
Sbjct: 246 QTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 9/123 (7%)

Query: 19  ILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTYQK---YTLNIWDVGGQRT 72
           ++++G    GKT+++ + +N + +     T+G  F  K VT       T+ +WD  GQ  
Sbjct: 11  VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER 70

Query: 73  IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKM---ELDNLLKEERLSGASLLILANKQDI 129
            +S    ++   D  V V D ++    ++ K    E               +IL NK D 
Sbjct: 71  FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDA 130

Query: 130 NGA 132
             +
Sbjct: 131 EES 133

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 37/175 (21%), Positives = 69/175 (39%), Gaps = 20/175 (11%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTYQKYT--LNIWDVGGQR 71
            + +++G    GK+ ++L+  +     V   T+G  F  + V        L IWD  GQ 
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81

Query: 72  TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131
           + RS  R+Y+    G + V D +     +     L++  ++   S   ++++ NK D+  
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLED-ARQHSSSNMVIMLIGNKSDLES 140

Query: 132 A-LTPTEIAKVL----NLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
                 E  +       L  M+          SA T   + E F    ++I  +I
Sbjct: 141 RRDVKREEGEAFAREHGLIFME---------TSAKTACNVEEAFINTAKEIYRKI 186

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 34/189 (17%), Positives = 71/189 (37%), Gaps = 37/189 (19%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY------------QKYT 61
           +++L +G    GKTT + +  + +       T+G  F  K V Y             K  
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85

Query: 62  LNIWDVGGQ---RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSG 117
           L +WD  GQ   R++  +++R+      G + + D +  +   + +  +  L        
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRD----AMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 141

Query: 118 ASLLILANKQDINGA-LTPTE----IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDW 172
             ++++ NK D+             +A    +   +          SA TG+ + +  + 
Sbjct: 142 PDIVLIGNKADLPDQREVNERQARELADKYGIPYFE---------TSAATGQNVEKAVET 192

Query: 173 LVQDIASRI 181
           L+  I  R+
Sbjct: 193 LLDLIMKRM 201

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 36/179 (20%), Positives = 72/179 (40%), Gaps = 28/179 (15%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTYQKYT--LNIWDVGGQ- 70
            +++++G    GK+ ++ +    E       T+G  F  +++     T    IWD  GQ 
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65

Query: 71  --RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127
             R I  +Y+R       G + V D +     ++ +  L   L++   S   ++++ NK 
Sbjct: 66  RYRRITSAYYRG----AVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGNKS 120

Query: 128 DINGA-LTPTEIAKVL----NLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
           D+      PT+ A+      NL  ++          SA     + E F  ++ +I   +
Sbjct: 121 DLRHLRAVPTDEARAFAEKNNLSFIE---------TSALDSTNVEEAFKNILTEIYRIV 170

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 38.6 bits (91), Expect = 3e-04
 Identities = 42/182 (23%), Positives = 73/182 (40%), Gaps = 26/182 (14%)

Query: 12  KKEKEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTYQKYT--LNIWD 66
              +E+++ ++G    GK++I+ + +       I+PT+G  F  KTV YQ       IWD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61

Query: 67  VGGQ---RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLI 122
             G    R +   Y+R     +   + V D +        K  +   L++       + I
Sbjct: 62  TAGLERFRALAPMYYRG----SAAAIIVYDITKEETFSTLKNWVRE-LRQHGPPSIVVAI 116

Query: 123 LANKQDINGALTPTEIAKVLNLEAMDKTRHWKI--VGCSAYTGEGLLEGFDWLVQDIASR 180
             NK D+      T++ +V+  +A D         V  SA     + E F     +I+ R
Sbjct: 117 AGNKCDL------TDVREVMERDAKDYADSIHAIFVETSAKNAININELF----IEISRR 166

Query: 181 IY 182
           I 
Sbjct: 167 IP 168

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 40/180 (22%), Positives = 75/180 (41%), Gaps = 29/180 (16%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGE-DTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQ 70
            ++++VG    GKT ++++  +G         T+G  F  K +     K  L +WD  GQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70

Query: 71  ---RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANK 126
              R++  +Y+R+       L+ + D ++    D+ +  L   + E      +L++L NK
Sbjct: 71  ERFRSVTHAYYRD----AHALLLLYDVTNKASFDNIQAWLTE-IHEYAQHDVALMLLGNK 125

Query: 127 QDINGA-LTPTE----IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
            D     +   E    +AK   L  M+          SA TG  +   F  + +++  R 
Sbjct: 126 VDSAHERVVKREDGEKLAKEYGLPFME---------TSAKTGLNVDLAFTAIAKELKRRS 176

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 31/173 (17%), Positives = 69/173 (39%), Gaps = 20/173 (11%)

Query: 15  KEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGG 69
           +  +++++G    GKT++  + + GE +    PT+   ++ K VT    ++ L++ D  G
Sbjct: 23  RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAG 81

Query: 70  Q---RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANK 126
           Q     +     ++     G V V   + L      +     L +    +   ++++ NK
Sbjct: 82  QDEYSILPY---SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNK 138

Query: 127 QDINGALTPTEIAKVLNLEAMDKTRHWKI--VGCSAYTGEGLLEGFDWLVQDI 177
            D+      +   +V  +E       W    +  SA   +     F  ++Q+I
Sbjct: 139 ADL------SPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 36/178 (20%), Positives = 67/178 (37%), Gaps = 32/178 (17%)

Query: 19  ILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTYQKYT--LNIWDVGGQ--- 70
           ++++G    GK+++VL+ + G+       T+G  F  +TV     T    IWD  GQ   
Sbjct: 9   LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 68

Query: 71  RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
            ++   Y+R         + V D ++       K  +   L+ +      + +  NK D+
Sbjct: 69  HSLAPMYYRG----AQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGNKADL 123

Query: 130 NGA-LTPTEIAKVL----NLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIY 182
                   + A+      +L  M+          SA T   + E F      IA ++ 
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFME---------TSAKTSMNVNEIF----MAIAKKLP 168

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 11/131 (8%)

Query: 5   SIIRKIKKKEKEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLGFN-IKTVTY--QKY 60
           ++  +   K  E+++ + G    GK+ +V++ +         PTL        T   +  
Sbjct: 17  NLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVV 76

Query: 61  TLNIWDVGGQ---RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSG 117
           ++ I D  GQ        + R      +G V V D +D    ++     + L + ++   
Sbjct: 77  SMEILDTAGQEDTIQREGHMRW----GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKN 132

Query: 118 ASLLILANKQD 128
            +L+++ NK D
Sbjct: 133 VTLILVGNKAD 143

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 38.3 bits (90), Expect = 5e-04
 Identities = 38/177 (21%), Positives = 73/177 (41%), Gaps = 20/177 (11%)

Query: 11  KKKEKEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIW 65
           +      +++MVG    GK+ + L+ +  E      PT    +  K V    ++  ++I 
Sbjct: 13  QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDIL 71

Query: 66  DVGGQ---RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLI 122
           D  GQ     IR    NYF   +G + V   +++          + +L+ +       L+
Sbjct: 72  DTAGQEDYAAIRD---NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL 128

Query: 123 LANKQDINGALTPTEIAKVLNLEAMDKTRHWKI--VGCSAYTGEGLLEGFDWLVQDI 177
           + NK D+       +  +V   EA ++   W +  V  SA T   + + F  L+++I
Sbjct: 129 VGNKSDL------EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 14/125 (11%)

Query: 13  KEKEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTYQKYT--LNIWDV 67
             +E+++ ++G    GK++IV + +       ISPT+G  F  KTV          IWD 
Sbjct: 20  AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDT 79

Query: 68  GGQ---RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLIL 123
            GQ    ++   Y+R     +   V V D +        K  +   LKE       + I 
Sbjct: 80  AGQERFHSLAPMYYRG----SAAAVIVYDITKQDSFYTLKKWVKE-LKEHGPENIVMAIA 134

Query: 124 ANKQD 128
            NK D
Sbjct: 135 GNKCD 139

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 38.0 bits (89), Expect = 6e-04
 Identities = 33/188 (17%), Positives = 70/188 (37%), Gaps = 37/188 (19%)

Query: 18  RILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTYQKYT------------L 62
           + L +G    GKT+++ +  +G+  S    T+G  F  K V Y+               L
Sbjct: 13  KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72

Query: 63  NIWDVGGQ---RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGA 118
            +WD  G    R++  +++R+      G + + D ++ +   + +  +  L         
Sbjct: 73  QLWDTAGLERFRSLTTAFFRD----AMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENP 128

Query: 119 SLLILANKQDINGA-LTPTE----IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173
            +++  NK D+        E    +A+   +   +          SA  G  +    + L
Sbjct: 129 DIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFE---------TSAANGTNISHAIEML 179

Query: 174 VQDIASRI 181
           +  I  R+
Sbjct: 180 LDLIMKRM 187

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 40/179 (22%), Positives = 71/179 (39%), Gaps = 28/179 (15%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTYQKYT--LNIWDVGGQ- 70
            +I+++G    GK+ ++ +    E       T+G  F  +T+  +       IWD  GQ 
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73

Query: 71  --RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127
             R I  +Y+R       G + V D S     ++C   L   L+E      ++ ++ NK 
Sbjct: 74  RYRAITSAYYRG----AVGALIVYDISKSSSYENCNHWLSE-LRENADDNVAVGLIGNKS 128

Query: 128 DINGA-LTPTE----IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
           D+      PTE     A+   L   +          SA   E + + F+ L+  I  ++
Sbjct: 129 DLAHLRAVPTEESKTFAQENQLLFTE---------TSALNSENVDKAFEELINTIYQKV 178

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 37.8 bits (89), Expect = 6e-04
 Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 18/175 (10%)

Query: 15  KEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG-FNIKTVTY--QKYTLNIWDVGGQ 70
              +++MVG    GK+ + L+ +  E      PT      K V    ++  ++I D  GQ
Sbjct: 3   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 62

Query: 71  ---RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127
                IR    NYF   +G + V   +++          + +L+ +       L++ NK 
Sbjct: 63  EDYAAIRD---NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 119

Query: 128 DINGALTPTEIAKVLNLEAMDKTRHWKI--VGCSAYTGEGLLEGFDWLVQDIASR 180
           D+       +  +V   EA ++   W +  V  SA T   + + F  L+++I +R
Sbjct: 120 DL------EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 38.0 bits (89), Expect = 6e-04
 Identities = 36/179 (20%), Positives = 75/179 (41%), Gaps = 28/179 (15%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTYQKYT--LNIWDVGGQ- 70
            +++++G    GKT ++ +    E +     T+G  F+ +TV          IWD  G  
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85

Query: 71  --RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127
             R I  +Y+R       G + V D +  +     +  L   L +   +   ++++ NK 
Sbjct: 86  RYRAITSAYYRG----AVGALLVFDLTKHQTYAVVERWLKE-LYDHAEATIVVMLVGNKS 140

Query: 128 DINGA-LTPTEIAKVL----NLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
           D++ A   PTE A++      L  ++          SA     +   F+ ++++I +++
Sbjct: 141 DLSQAREVPTEEARMFAENNGLLFLE---------TSALDSTNVELAFETVLKEIFAKV 190

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 37.5 bits (88), Expect = 6e-04
 Identities = 33/173 (19%), Positives = 66/173 (38%), Gaps = 19/173 (10%)

Query: 15  KEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG-FNIKTVTY--QKYTLNIWDVGGQ 70
           +E +++++G    GK+ + ++ + G       PT+     K V    Q+  L I D  G 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61

Query: 71  ---RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127
                +R     Y +   G   V   +     +D +   + +L+ +      ++++ NK 
Sbjct: 62  EQFTAMR---DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKC 118

Query: 128 DINGALTPTEIAKVLNLEAMDKTRHWKIVG---CSAYTGEGLLEGFDWLVQDI 177
           D+       +   V   +  +  R W        SA +   + E F  LV+ I
Sbjct: 119 DL------EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 37.5 bits (88), Expect = 8e-04
 Identities = 32/176 (18%), Positives = 66/176 (37%), Gaps = 19/176 (10%)

Query: 15  KEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG-FNIKTVTY--QKYTLNIWDVGGQ 70
            + R+ + G    GK+++VL+ + G       PT+     + ++      TL I D  G 
Sbjct: 2   NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGS 61

Query: 71  ---RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKE-ERLSGASLLILANK 126
                ++        +    + V   +  + L++ K   + + +    +    ++++ NK
Sbjct: 62  HQFPAMQR---LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNK 118

Query: 127 QDINGALTPTEIAKVLNLEAMDKTRHWKI--VGCSAYTGEGLLEGFDWLVQDIASR 180
            D       +   +V + EA    R WK   +  SA     + E F  L+     R
Sbjct: 119 CDE------SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 168

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 37.5 bits (88), Expect = 9e-04
 Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 16/123 (13%)

Query: 18  RILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTYQ---KYTLNIWDVGGQ- 70
           +I+++G   SGKT++               T+G  F ++ +T       TL IWD+GGQ 
Sbjct: 8   KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67

Query: 71  --RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNL--LKEERLSGASLLILAN 125
               +   Y         G++ V D ++ +  ++ +     +  + EE  +   + ++ N
Sbjct: 68  IGGKMLDKYIYG----AQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGN 123

Query: 126 KQD 128
           K D
Sbjct: 124 KID 126

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 37.6 bits (88), Expect = 9e-04
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 16/114 (14%)

Query: 28  GKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQ---RTI-RSYWR 78
           GKT+++ + +N + ++    T+G  F  K V    +  T+ IWD  GQ   +++  +++R
Sbjct: 20  GKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYR 79

Query: 79  NYFEQTDGLVWVVDSSDLRRLDDCKM---ELDNLLKEERLSGASLLILANKQDI 129
                 D  V V D +             E               ++L NK D+
Sbjct: 80  G----ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 37.6 bits (88), Expect = 9e-04
 Identities = 24/122 (19%), Positives = 53/122 (43%), Gaps = 14/122 (11%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQ- 70
            +I+++G  N GKT +  +   G        T+G  F  + V    ++  + +WD  GQ 
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80

Query: 71  ---RTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANK 126
              +++ + Y+RN       +V+V D +++         ++   +    +    +++ NK
Sbjct: 81  RFRKSMVQHYYRN----VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNK 136

Query: 127 QD 128
            D
Sbjct: 137 CD 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	185
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	100.0
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	100.0
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	100.0
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	100.0
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	100.0
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	100.0
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	100.0
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	100.0
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	100.0
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	100.0
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	100.0
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	100.0
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	100.0
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.98
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.98
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.98
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.98
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.98
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.97
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.97
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.97
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.97
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.97
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.97
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.97
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.97
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.97
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.97
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.97
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.97
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.97
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.97
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.97
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.97
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.97
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.97
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.97
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.97
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.97
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.97
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.97
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.97
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.97
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.97
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.97
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.97
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.97
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.97
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.97
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.97
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.97
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.97
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.97
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.97
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.97
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.97
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.97
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.97
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.97
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.97
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.97
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.97
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.97
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.97
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.97
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.97
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.97
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.97
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.97
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.97
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.97
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.97
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.97
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.97
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.97
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.97
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.97
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.97
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.97
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.96
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.96
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.96
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.96
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.96
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.96
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.96
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.96
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.96
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.96
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.96
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.96
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.96
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.96
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.95
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.95
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.95
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.95
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.95
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.95
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.91
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.95
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.95
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.95
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.94
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.94
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.94
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.94
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.94
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.93
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.93
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.93
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.93
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.92
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.92
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.92
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.92
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.92
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.92
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.92
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.92
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.91
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.91
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.91
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.91
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.91
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.91
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.91
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.91
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.9
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.9
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.9
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.9
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.9
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.9
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.89
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.89
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.89
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.89
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.89
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.89
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.89
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.89
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.89
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.89
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.88
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.88
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.88
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.88
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.88
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.87
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.87
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.87
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.87
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.87
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.87
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.87
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.87
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.87
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.86
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.86
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.85
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.85
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.85
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.84
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.83
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.83
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.83
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.82
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.82
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.82
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.82
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.81
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.81
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.8
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.8
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.78
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.77
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.77
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.77
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.76
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.72
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.71
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.7
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.7
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.69
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.69
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.69
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.68
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.67
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.66
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.66
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.65
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.64
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.63
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.63
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.61
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.59
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.57
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.56
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.55
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.33
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.28
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.25
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.24
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.14
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.1
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.09
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.02
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.02
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.01
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.95
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.91
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.81
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.76
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.74
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.7
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.64
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.63
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.48
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.45
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.24
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.24
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.1
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.06
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.04
2xxa_A	433	Signal recognition particle protein; protein trans	98.03
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.0
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.8
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.77
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.65
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.64
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.63
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.62
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.62
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.59
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.57
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.56
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.56
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.54
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.53
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.52
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	97.52
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.52
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.48
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.46
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.44
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.44
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.43
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.43
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.42
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.42
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.42
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.42
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.42
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.41
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.41
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.41
1g6h_A	257	High-affinity branched-chain amino acid transport	97.41
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.4
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.4
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.4
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.39
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.39
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.38
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.38
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.38
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.38
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.38
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.37
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.37
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.36
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.35
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.35
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.34
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.34
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.34
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.34
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.34
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.34
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.33
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.33
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.33
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.32
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.32
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.32
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.31
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.31
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.3
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.3
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.3
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.3
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.28
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.28
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.28
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.27
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.27
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.27
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.27
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.26
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.26
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.26
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.26
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.26
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.26
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.25
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.25
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.25
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.24
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.24
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.23
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.22
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.22
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.22
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.22
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.21
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.21
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.21
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.2
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.19
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.19
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.19
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.19
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.19
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.18
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.18
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.18
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.18
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.18
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.18
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.17
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.17
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.17
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.17
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.16
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.16
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.16
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.15
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.15
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.15
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.14
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.14
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.14
3end_A	307	Light-independent protochlorophyllide reductase ir	97.14
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.14
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.13
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.12
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.11
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.1
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.1
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.1
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.1
1via_A	175	Shikimate kinase; structural genomics, transferase	97.1
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.09
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.07
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.06
3co5_A	143	Putative two-component system transcriptional RES	97.06
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	97.06
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.06
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.06
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	97.05
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.05
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.05
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.05
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.04
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.04
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.04
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.03
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.03
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.03
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.03
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.03
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.02
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.01
3bos_A	242	Putative DNA replication factor; P-loop containing	97.01
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.01
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.01
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.0
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.98
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.98
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.97
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.97
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.96
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.95
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.94
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.94
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.94
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.94
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.93
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.92
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.91
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.91
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.91
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.9
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.9
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.89
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.89
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.88
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.87
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.85
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.85
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.85
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.85
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.85
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.83
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.82
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.8
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.8
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.78
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.77
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.77
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.77
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.76
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.75
2og2_A	359	Putative signal recognition particle receptor; nuc	96.74
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.74
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.73
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.72
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.71
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.69
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.69
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.68
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.67
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.67
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.67
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.66
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.66
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.66
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.66
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.63
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.63
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.61
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.61
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.61
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.61
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.61
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.61
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.6
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.58
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.58
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.58
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.58
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.56
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.56
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.55
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.55
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.54
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.53
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.53
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.52
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.52
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.5
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.5
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.5
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.49
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.48
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.45
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.45
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.45
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.41
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.4
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.4
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.37
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.36
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.34
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.33
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.33
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.32
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.3
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.3
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.3
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.29
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.28
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.27
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.27
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.26
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	96.26
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.21
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.21
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.2
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.2
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.17
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.14
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.13
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.12
3pvs_A	447	Replication-associated recombination protein A; ma	96.12
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.11
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.11
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.08
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	96.08
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.05
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.04

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=100.00  E-value=2.9e-36  Score=210.30  Aligned_cols=181  Identities=62%  Similarity=1.129  Sum_probs=146.9

Q ss_pred             CChHHHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhh
Q 029920            1 MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNY   80 (185)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~   80 (185)
                      ||+.+++++.+...+.++|+++|++|+|||||++++.+.....+.+|.+.....+.+++..+.+|||||++.+...+..+
T Consensus         3 mg~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~   82 (186)
T 1ksh_A            3 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNY   82 (186)
T ss_dssp             --------------CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGG
T ss_pred             cchhHHHHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHH
Confidence            67556566665447889999999999999999999998887678889998888888899999999999999999999999


Q ss_pred             hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecc
Q 029920           81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSA  160 (185)
Q Consensus        81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (185)
                      ++.+|++++|+|++++.+++....++..++......+.|+++|+||+|+.+....+++.+.+....... ..++++++||
T Consensus        83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa  161 (186)
T 1ksh_A           83 FESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRS-HHWRIQGCSA  161 (186)
T ss_dssp             CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCS-SCEEEEECCT
T ss_pred             hcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccC-CceEEEEeeC
Confidence            999999999999999999999999998888765556899999999999987767777776665433333 6779999999


Q ss_pred             cCCCCHHHHHHHHHHHHhhhcc
Q 029920          161 YTGEGLLEGFDWLVQDIASRIY  182 (185)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~~~~~  182 (185)
                      ++|.|++++++++.+.+.++.+
T Consensus       162 ~~~~gi~~l~~~l~~~i~~~~~  183 (186)
T 1ksh_A          162 VTGEDLLPGIDWLLDDISSRVF  183 (186)
T ss_dssp             TTCTTHHHHHHHHHHHHHTC--
T ss_pred             CCCCCHHHHHHHHHHHHHhccc
Confidence            9999999999999999987754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=100.00  E-value=4.3e-36  Score=208.88  Aligned_cols=178  Identities=51%  Similarity=0.930  Sum_probs=151.0

Q ss_pred             ChHHHHHHhhcc-CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhh
Q 029920            2 GLLSIIRKIKKK-EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNY   80 (185)
Q Consensus         2 ~~~~~~~~~~~~-~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~   80 (185)
                      |+.+++++.... ...++|+++|++|+|||||++++.+..+..+.+|.++....+.+++..+.+|||||++.+...+..+
T Consensus         1 ~~~~~~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~   80 (181)
T 1fzq_A            1 GLLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSY   80 (181)
T ss_dssp             CCCCHHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHH
T ss_pred             CHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHH
Confidence            344566666543 6789999999999999999999999988888899998888888899999999999999999999999


Q ss_pred             hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecc
Q 029920           81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSA  160 (185)
Q Consensus        81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (185)
                      ++.+|++++|+|+++++++.....++..++......+.|+++|+||+|+.+....+++...+....... ..++++++||
T Consensus        81 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa  159 (181)
T 1fzq_A           81 FENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRD-RVWQIQSCSA  159 (181)
T ss_dssp             HTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCS-SCEEEEECCT
T ss_pred             hCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccC-CceEEEEccC
Confidence            999999999999999999999999988887765556899999999999987766667766665433333 5678999999


Q ss_pred             cCCCCHHHHHHHHHHHHhhh
Q 029920          161 YTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~~~  180 (185)
                      ++|.|++++|++|.+.+.++
T Consensus       160 ~~g~gi~~l~~~l~~~~~~~  179 (181)
T 1fzq_A          160 LTGEGVQDGMNWVCKNVNAK  179 (181)
T ss_dssp             TTCTTHHHHHHHHHHTC---
T ss_pred             CCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999887654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6e-35  Score=203.90  Aligned_cols=178  Identities=38%  Similarity=0.729  Sum_probs=146.1

Q ss_pred             CChH-HHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHh
Q 029920            1 MGLL-SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN   79 (185)
Q Consensus         1 ~~~~-~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~   79 (185)
                      ||.. +.+...+ ..+.++|+++|++|+|||||+++|.++.+..+.+|.++....+.+++..+.+|||||++.+...+..
T Consensus         1 m~~~~~~~~~~~-~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   79 (187)
T 1zj6_A            1 MGILFTRIWRLF-NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNT   79 (187)
T ss_dssp             -CHHHHHHHHHH-TTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHH
T ss_pred             CchHHHHHHHhc-CCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence            6743 3333343 5788999999999999999999999888877788888877888889999999999999999888899


Q ss_pred             hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeec
Q 029920           80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCS  159 (185)
Q Consensus        80 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (185)
                      +++.+|++++|+|+++++++.....++..+.......+.|+++|+||+|+.+....+++...+....+.. .+++++++|
T Consensus        80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~-~~~~~~~~S  158 (187)
T 1zj6_A           80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKD-HQWHIQACC  158 (187)
T ss_dssp             HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCS-SCEEEEECB
T ss_pred             HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcC-CCcEEEEcc
Confidence            9999999999999999999999999999988765456899999999999987766777776665443333 567999999


Q ss_pred             ccCCCCHHHHHHHHHHHHhhh
Q 029920          160 AYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~~  180 (185)
                      |++|.|+++++++|.+.+.+.
T Consensus       159 a~~g~gi~~l~~~l~~~~~~~  179 (187)
T 1zj6_A          159 ALTGEGLCQGLEWMMSRLKIR  179 (187)
T ss_dssp             TTTTBTHHHHHHHHHHHHCC-
T ss_pred             CCCCcCHHHHHHHHHHHHHHH
Confidence            999999999999999988654

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=100.00  E-value=1.5e-34  Score=198.64  Aligned_cols=166  Identities=45%  Similarity=0.825  Sum_probs=146.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDS   93 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   93 (185)
                      .+.++|+++|++|+|||||++++.++.+....+|.+.....+.+++..+.+|||||++.+...+..+++.+|++++|+|+
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~   84 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS   84 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEEC
Confidence            46799999999999999999999998888888888888888889999999999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHH
Q 029920           94 SDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL  173 (185)
Q Consensus        94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (185)
                      +++.++.....++..++......+.|+++|+||+|+.+....+++...+....... .+++++++||++|.|+++++++|
T Consensus        85 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l  163 (171)
T 1upt_A           85 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKD-RKWQIFKTSATKGTGLDEAMEWL  163 (171)
T ss_dssp             TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTT-SCEEEEECCTTTCTTHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccC-CceEEEECcCCCCcCHHHHHHHH
Confidence            99999999999998888765556899999999999988767777777666544443 67799999999999999999999


Q ss_pred             HHHHhhh
Q 029920          174 VQDIASR  180 (185)
Q Consensus       174 ~~~~~~~  180 (185)
                      .+.+.++
T Consensus       164 ~~~i~~~  170 (171)
T 1upt_A          164 VETLKSR  170 (171)
T ss_dssp             HHHHHTC
T ss_pred             HHHHhhc
Confidence            9988654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=100.00  E-value=8.9e-35  Score=198.63  Aligned_cols=163  Identities=45%  Similarity=0.856  Sum_probs=141.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCc
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL   96 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   96 (185)
                      +||+++|++|+|||||++++.++.+....||.+.....+..++..+.+|||||++.+...+..+++.+|++++|+|++++
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   80 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   80 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence            58999999999999999999988887778888877778888889999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHH
Q 029920           97 RRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQD  176 (185)
Q Consensus        97 ~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  176 (185)
                      +++.....++..+.......+.|+++|+||+|+.+....+++...+....... ..++++++||++|.|+++++++|.+.
T Consensus        81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~  159 (164)
T 1r8s_A           81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH-RNWYIQATCATSGDGLYEGLDWLSNQ  159 (164)
T ss_dssp             GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSS-CCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccC-ccEEEEEcccCCCcCHHHHHHHHHHH
Confidence            99999999998888765566899999999999987766677777666544433 56889999999999999999999988


Q ss_pred             Hhhh
Q 029920          177 IASR  180 (185)
Q Consensus       177 ~~~~  180 (185)
                      +.++
T Consensus       160 i~~~  163 (164)
T 1r8s_A          160 LRNQ  163 (164)
T ss_dssp             C---
T ss_pred             Hhhc
Confidence            7653

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=2.9e-35  Score=204.54  Aligned_cols=179  Identities=45%  Similarity=0.842  Sum_probs=147.4

Q ss_pred             CChH--HHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHH
Q 029920            1 MGLL--SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWR   78 (185)
Q Consensus         1 ~~~~--~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~   78 (185)
                      ||..  ..++..+...+.++|+++|++|+|||||++++.++.+..+.+|.++....+.+++..+.+|||||++.+...+.
T Consensus         1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   80 (183)
T 1moz_A            1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR   80 (183)
T ss_dssp             -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGG
T ss_pred             CchHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence            6732  33344443378999999999999999999999988887788888888888888899999999999999888889


Q ss_pred             hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEee
Q 029920           79 NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGC  158 (185)
Q Consensus        79 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (185)
                      .+++.+|++++|+|++++.+++....++..++......+.|+++|+||+|+.+....+++...+....... ..++++++
T Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~-~~~~~~~~  159 (183)
T 1moz_A           81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKD-RSWSIVAS  159 (183)
T ss_dssp             GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCS-SCEEEEEE
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccC-CceEEEEc
Confidence            99999999999999999999999999999887765456899999999999987767777777666443333 56789999


Q ss_pred             cccCCCCHHHHHHHHHHHHhhh
Q 029920          159 SAYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~~~~  180 (185)
                      ||++|.|+++++++|.+.+.++
T Consensus       160 Sa~~~~gi~~l~~~l~~~~~~~  181 (183)
T 1moz_A          160 SAIKGEGITEGLDWLIDVIKEE  181 (183)
T ss_dssp             BGGGTBTHHHHHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHHHhc
Confidence            9999999999999999988764

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=100.00  E-value=3.3e-35  Score=204.25  Aligned_cols=166  Identities=37%  Similarity=0.734  Sum_probs=141.5

Q ss_pred             hhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      .....+.++|+++|++|+|||||+++|.+..+..+.+|.+.....+.+++..+.+|||||++.+...+..+++.+|++++
T Consensus        15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   94 (181)
T 2h17_A           15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIV   94 (181)
T ss_dssp             ------CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred             cCCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            33456679999999999999999999999998778888888778888899999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (185)
                      |+|++++.++.....++..++......+.|+++|+||+|+.+....+++...+....... .+++++++||++|.|++++
T Consensus        95 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~-~~~~~~~~Sa~~g~gi~~l  173 (181)
T 2h17_A           95 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKD-HQWHIQACCALTGEGLCQG  173 (181)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCS-SCEEEEECBTTTTBTHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccC-CceEEEEccCCCCcCHHHH
Confidence            999999999999999999888764456899999999999987767777777666544333 5679999999999999999


Q ss_pred             HHHHHHH
Q 029920          170 FDWLVQD  176 (185)
Q Consensus       170 ~~~l~~~  176 (185)
                      +++|.+.
T Consensus       174 ~~~l~~~  180 (181)
T 2h17_A          174 LEWMMSR  180 (181)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHhh
Confidence            9998753

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=100.00  E-value=8.2e-35  Score=204.21  Aligned_cols=166  Identities=43%  Similarity=0.827  Sum_probs=142.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD   92 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   92 (185)
                      ..+.++|+++|++|+|||||++++.++.+....+|.++....+...+..+.+|||||++.+...+..+++.+|++++|+|
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D  105 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD  105 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            56789999999999999999999999888777788888888888899999999999999998899999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHH
Q 029920           93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDW  172 (185)
Q Consensus        93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (185)
                      +++++++.....++..++......+.|+++|+||+|+.+....+++...+....... ..++++++||++|.|+++++++
T Consensus       106 ~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~-~~~~~~~~SA~~g~gi~~l~~~  184 (192)
T 2b6h_A          106 SNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRS-RTWYVQATCATQGTGLYDGLDW  184 (192)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSS-CCEEEEECBTTTTBTHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccC-CceEEEECcCCCcCCHHHHHHH
Confidence            999999999999999888765566899999999999987766777777776544443 6788999999999999999999


Q ss_pred             HHHHHhh
Q 029920          173 LVQDIAS  179 (185)
Q Consensus       173 l~~~~~~  179 (185)
                      |.+.+.+
T Consensus       185 l~~~i~~  191 (192)
T 2b6h_A          185 LSHELSK  191 (192)
T ss_dssp             HHHHTTT
T ss_pred             HHHHHhc
Confidence            9988754

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=100.00  E-value=4e-35  Score=205.02  Aligned_cols=166  Identities=43%  Similarity=0.827  Sum_probs=146.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDS   93 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   93 (185)
                      ++.++|+++|++|+|||||++++.++.+....+|.+.....+..++..+.+|||||++.+...+..+++.+|++++|+|+
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~   99 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDS   99 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEET
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeC
Confidence            67899999999999999999999998887778888888888888999999999999998888888899999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHH
Q 029920           94 SDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL  173 (185)
Q Consensus        94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (185)
                      ++++++.....++..++......+.|+++|+||+|+.+....+++...+....... .+++++++||++|.|+++++++|
T Consensus       100 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l  178 (189)
T 2x77_A          100 TDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMN-RTWTIVKSSSKTGDGLVEGMDWL  178 (189)
T ss_dssp             TCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCS-SCEEEEECCTTTCTTHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccC-CceEEEEccCCCccCHHHHHHHH
Confidence            99999999999998888765556899999999999987767777777766544443 56799999999999999999999


Q ss_pred             HHHHhhh
Q 029920          174 VQDIASR  180 (185)
Q Consensus       174 ~~~~~~~  180 (185)
                      .+.+.++
T Consensus       179 ~~~i~~~  185 (189)
T 2x77_A          179 VERLREQ  185 (189)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9988765

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=100.00  E-value=3e-34  Score=200.59  Aligned_cols=167  Identities=35%  Similarity=0.632  Sum_probs=144.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      ..+.++|+|+|++|+|||||+++|.+..+. .+.+|.+.....+...+..+.+|||||++.+...+..+++.+|++++|+
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   98 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV   98 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEE
Confidence            456799999999999999999999987775 5778888888888888999999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHH
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFD  171 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (185)
                      |+++++++.....++..++......+.|+++|+||+|+.......++...+....... ..++++++||++|.|++++++
T Consensus        99 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~g~gv~~l~~  177 (188)
T 1zd9_A           99 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQD-REICCYSISCKEKDNIDITLQ  177 (188)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCS-SCEEEEECCTTTCTTHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhcc-CCeeEEEEECCCCCCHHHHHH
Confidence            9999999999999999888765556899999999999987766667766665544333 678899999999999999999


Q ss_pred             HHHHHHhhh
Q 029920          172 WLVQDIASR  180 (185)
Q Consensus       172 ~l~~~~~~~  180 (185)
                      +|.+.+.++
T Consensus       178 ~l~~~~~~~  186 (188)
T 1zd9_A          178 WLIQHSKSR  186 (188)
T ss_dssp             HHHHTCC--
T ss_pred             HHHHHHHhh
Confidence            999877654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=100.00  E-value=2.9e-34  Score=201.11  Aligned_cols=165  Identities=30%  Similarity=0.588  Sum_probs=139.8

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      ...+.++|+++|++|+|||||++++.++.+..+.+|.+.....+.+++..+.+|||||++.+...+..+++.+|++++|+
T Consensus        19 ~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   98 (190)
T 1m2o_B           19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV   98 (190)
T ss_dssp             -----CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEE
T ss_pred             ccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence            34667899999999999999999999998888888988888888899999999999999999888889999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCccc------ccCccceEEEeecccCCCC
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEA------MDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~Sa~~~~~  165 (185)
                      |++++++++....++..++......+.|+++|+||+|+.+....+++.+.+....      +.....++++++||++|.|
T Consensus        99 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  178 (190)
T 1m2o_B           99 DAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG  178 (190)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBS
T ss_pred             ECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCC
Confidence            9999999999999999888765556899999999999987666677766654321      1223567899999999999


Q ss_pred             HHHHHHHHHHH
Q 029920          166 LLEGFDWLVQD  176 (185)
Q Consensus       166 i~~l~~~l~~~  176 (185)
                      ++++|++|.+.
T Consensus       179 i~~l~~~l~~~  189 (190)
T 1m2o_B          179 YLEAFQWLSQY  189 (190)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhh
Confidence            99999998764

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.7e-34  Score=200.36  Aligned_cols=168  Identities=36%  Similarity=0.691  Sum_probs=140.1

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHhCCC--CcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           11 KKKEKEMRILMVGLDNSGKTTIVLKINGED--TSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ....+.++|+++|++|+|||||+++|.+..  ...+.+|.+.....+.+++..+.+|||||++.+...+..+++.+|+++
T Consensus        16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (190)
T 2h57_A           16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAII   95 (190)
T ss_dssp             -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred             cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            335667999999999999999999999887  346678888888888888999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhcccc--CCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERL--SGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL  166 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (185)
                      +|+|++++.++.....++..+......  .+.|+++|+||+|+.+....+++...+....+.. .+++++++||++|.|+
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi  174 (190)
T 2h57_A           96 FVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKD-KPWHICASDAIKGEGL  174 (190)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCS-SCEEEEECBTTTTBTH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccC-CceEEEEccCCCCcCH
Confidence            999999999999999998888776443  5799999999999987766777766665333322 5679999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 029920          167 LEGFDWLVQDIAS  179 (185)
Q Consensus       167 ~~l~~~l~~~~~~  179 (185)
                      ++++++|.+.+.+
T Consensus       175 ~~l~~~l~~~i~~  187 (190)
T 2h57_A          175 QEGVDWLQDQIQT  187 (190)
T ss_dssp             HHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988754

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=100.00  E-value=3.6e-34  Score=201.47  Aligned_cols=170  Identities=32%  Similarity=0.639  Sum_probs=143.7

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHhCCCCccc--ccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           11 KKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVI--SPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ......++|+|+|++|||||||+++|.+..+...  .+|.++....+......+.+|||||++.+...+..+++.+|+++
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   91 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVI   91 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence            4467789999999999999999999999988654  88999888888889999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhcccc-------CCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeeccc
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERL-------SGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAY  161 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (185)
                      +|+|++++++|.....|+..++.....       .+.|+++|+||+|+......+++...+..........++++++||+
T Consensus        92 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  171 (199)
T 4bas_A           92 FVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGL  171 (199)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTT
T ss_pred             EEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCC
Confidence            999999999999999999988776332       2799999999999988877777777776544423377899999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh
Q 029920          162 TGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~~  180 (185)
                      +|.|++++|++|.+.+.++
T Consensus       172 ~g~gv~~l~~~l~~~~~~~  190 (199)
T 4bas_A          172 KGTGVHEGFSWLQETASRQ  190 (199)
T ss_dssp             TTBTHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHH
Confidence            9999999999999988654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=100.00  E-value=3.1e-34  Score=202.22  Aligned_cols=173  Identities=31%  Similarity=0.567  Sum_probs=136.2

Q ss_pred             HHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCC
Q 029920            5 SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQT   84 (185)
Q Consensus         5 ~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   84 (185)
                      +.++......+.++|+++|++|+|||||++++.+..+..+.+|.+.....+.+++..+.+|||||++.++..+..+++.+
T Consensus        14 ~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   93 (198)
T 1f6b_A           14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAI   93 (198)
T ss_dssp             HHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGC
T ss_pred             HHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcC
Confidence            34444444567789999999999999999999998888778888877788888899999999999999888889999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCccc---------cc--Cccce
Q 029920           85 DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEA---------MD--KTRHW  153 (185)
Q Consensus        85 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~---------~~--~~~~~  153 (185)
                      |++++|+|+++++++.....++..++......+.|+++|+||+|+.+....+++.+.+....         +.  ....+
T Consensus        94 d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (198)
T 1f6b_A           94 NGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPL  173 (198)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCE
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceE
Confidence            99999999999999999999999988765556899999999999987666666666554321         11  12467


Q ss_pred             EEEeecccCCCCHHHHHHHHHHHH
Q 029920          154 KIVGCSAYTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       154 ~~~~~Sa~~~~~i~~l~~~l~~~~  177 (185)
                      ++++|||++|.|++++|++|.+.+
T Consensus       174 ~~~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          174 EVFMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhc
Confidence            899999999999999999997653

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=6.4e-34  Score=202.75  Aligned_cols=161  Identities=19%  Similarity=0.349  Sum_probs=122.3

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE--EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN--IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDG   86 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~   86 (185)
                      .+.+.+||+|+|++|+|||||++++..+.+. .+.+|.+..  ...+..++  +.+.+|||+|++.+..++..|++.+++
T Consensus         9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~   88 (216)
T 4dkx_A            9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA   88 (216)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred             CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence            3556799999999999999999999988775 567787743  33444444  788999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920           87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE  164 (185)
Q Consensus        87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (185)
                      +++|||++++++|+.+..|+..+... ..++.|+++|+||+|+.+.  ...++....      +...+++|++|||++|.
T Consensus        89 ~ilv~di~~~~Sf~~i~~~~~~i~~~-~~~~~piilVgNK~Dl~~~r~V~~~e~~~~------a~~~~~~~~e~SAktg~  161 (216)
T 4dkx_A           89 AVVVYDITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTDLADKRQVSIEEGERK------AKELNVMFIETSAKAGY  161 (216)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHH-HTTSSEEEEEEECTTCGGGCCSCHHHHHHH------HHHHTCEEEEEBTTTTB
T ss_pred             EEEEeecchhHHHHHHHHHHHHHHHh-cCCCCeEEEEeeccchHhcCcccHHHHhhH------HHHhCCeeEEEeCCCCc
Confidence            99999999999999999999888665 3467999999999998653  233333221      11256789999999999


Q ss_pred             CHHHHHHHHHHHHhh
Q 029920          165 GLLEGFDWLVQDIAS  179 (185)
Q Consensus       165 ~i~~l~~~l~~~~~~  179 (185)
                      ||+++|+.|++.+.+
T Consensus       162 nV~e~F~~i~~~i~~  176 (216)
T 4dkx_A          162 NVKQLFRRVAAALPG  176 (216)
T ss_dssp             SHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999988754

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.4e-32  Score=206.05  Aligned_cols=166  Identities=46%  Similarity=0.856  Sum_probs=143.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDS   93 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   93 (185)
                      .+.++|+|+|++|+|||||+++|.+..+....+|.+.....+...+..+.+|||||++.+...+..+++.+|++|+|||+
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~  242 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS  242 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEET
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            45679999999999999999999999887777888888888889999999999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHH
Q 029920           94 SDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL  173 (185)
Q Consensus        94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (185)
                      +++.++.....++..++......++|+++|+||+|+.+.....++...+....... ..++++++||++|.|++++|++|
T Consensus       243 ~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~-~~~~~~~vSAk~g~gi~el~~~l  321 (329)
T 3o47_A          243 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH-RNWYIQATCATSGDGLYEGLDWL  321 (329)
T ss_dssp             TCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCS-SCEEEEECBTTTTBTHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhc-CCCEEEEEECCCCcCHHHHHHHH
Confidence            99999999999999988876667899999999999988877778877776654443 67899999999999999999999


Q ss_pred             HHHHhhh
Q 029920          174 VQDIASR  180 (185)
Q Consensus       174 ~~~~~~~  180 (185)
                      .+.+.++
T Consensus       322 ~~~l~~~  328 (329)
T 3o47_A          322 SNQLRNQ  328 (329)
T ss_dssp             HHHHTC-
T ss_pred             HHHHHhc
Confidence            9988653

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=1.4e-31  Score=183.04  Aligned_cols=160  Identities=16%  Similarity=0.193  Sum_probs=106.9

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEE-EEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIK-TVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      +.+||+++|++|+|||||++++.+.......++.+.+.. .+..++  ..+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (166)
T 3q72_A            1 SVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   80 (166)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence            358999999999999999999998877666666664443 334433  67899999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (185)
                      |++++++++....|+..+.......+.|+++|+||+|+.+...  ..+.. .+.     ...+++++++||++|.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~-~~~-----~~~~~~~~~~Sa~~~~gi~~l  154 (166)
T 3q72_A           81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGR-ACA-----VVFDCKFIETSAALHHNVQAL  154 (166)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHH-HHH-----HHTTCEEEECBGGGTBSHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHH-HHH-----HHhCCcEEEeccCCCCCHHHH
Confidence            9999999999999999888765566899999999999875432  22222 111     114568999999999999999


Q ss_pred             HHHHHHHHhhh
Q 029920          170 FDWLVQDIASR  180 (185)
Q Consensus       170 ~~~l~~~~~~~  180 (185)
                      |+++.+.+.++
T Consensus       155 ~~~l~~~~~~~  165 (166)
T 3q72_A          155 FEGVVRQIRLR  165 (166)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999988664

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=3.8e-31  Score=185.38  Aligned_cols=166  Identities=21%  Similarity=0.258  Sum_probs=128.1

Q ss_pred             HhhccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEE--EEE--cCeEEEEEEcCCchhhHHHHHhhhcC
Q 029920            9 KIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKT--VTY--QKYTLNIWDVGGQRTIRSYWRNYFEQ   83 (185)
Q Consensus         9 ~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~   83 (185)
                      ......+.++|+|+|++|+|||||+++|.+..+. .+.++.+.....  +..  ....+.+|||||++.+...+..+++.
T Consensus        16 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   95 (192)
T 2fg5_A           16 PRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRG   95 (192)
T ss_dssp             -----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTT
T ss_pred             cccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhcc
Confidence            3344567899999999999999999999988864 566777755443  333  34789999999999999999999999


Q ss_pred             CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC--CCCHHHHHHhcCcccccCccceEEEeeccc
Q 029920           84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING--ALTPTEIAKVLNLEAMDKTRHWKIVGCSAY  161 (185)
Q Consensus        84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (185)
                      +|++++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+  ....++......      ..+++++++||+
T Consensus        96 ~d~iilV~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~  168 (192)
T 2fg5_A           96 SAAAVIVYDITKQDSFYTLKKWVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDAKEYAE------SIGAIVVETSAK  168 (192)
T ss_dssp             CSEEEEEEETTCTHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH------TTTCEEEECBTT
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHH------HcCCEEEEEeCC
Confidence            99999999999999999988887776554 335799999999999864  223333333221      145789999999


Q ss_pred             CCCCHHHHHHHHHHHHhhhc
Q 029920          162 TGEGLLEGFDWLVQDIASRI  181 (185)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~~~  181 (185)
                      +|.|+++++++|.+.+.+..
T Consensus       169 ~~~gi~~l~~~l~~~i~~~~  188 (192)
T 2fg5_A          169 NAINIEELFQGISRQIPPLD  188 (192)
T ss_dssp             TTBSHHHHHHHHHHTCC---
T ss_pred             CCcCHHHHHHHHHHHHHhhC
Confidence            99999999999999876543

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.98  E-value=9.9e-31  Score=180.18  Aligned_cols=161  Identities=17%  Similarity=0.174  Sum_probs=117.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceE--EEEEEEcC--eEEEEEEcCCchh--hHHHHHhhhcCCCEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFN--IKTVTYQK--YTLNIWDVGGQRT--IRSYWRNYFEQTDGL   87 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~--~~~~~~~~~~~~d~~   87 (185)
                      ...++|+++|++|+|||||+++|.+..+....++.+..  ...+..++  ..+.+|||||++.  +......+++.+|++
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            46799999999999999999999998886655555533  34455555  5789999999887  456677888999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      ++|+|++++.+++....|+..+.......+.|+++|+||+|+.+...  .++... +.     ...+++++++||++|.|
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-~~-----~~~~~~~~~~Sa~~g~g  155 (175)
T 2nzj_A           82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRA-CA-----VVFDCKFIETSATLQHN  155 (175)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHH-HH-----HHHTSEEEECBTTTTBS
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHH-HH-----HHcCCeEEEEecCCCCC
Confidence            99999999999999988888776654445799999999999975422  222221 11     11456899999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 029920          166 LLEGFDWLVQDIASR  180 (185)
Q Consensus       166 i~~l~~~l~~~~~~~  180 (185)
                      ++++|++|.+.+.++
T Consensus       156 i~~l~~~l~~~~~~~  170 (175)
T 2nzj_A          156 VAELFEGVVRQLRLR  170 (175)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999988654

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=5.3e-31  Score=184.61  Aligned_cols=165  Identities=22%  Similarity=0.340  Sum_probs=131.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      ..+.++|+++|++|+|||||+++|.+..+. ...++.+...  ..+..++  ..+.+|||||++.+...+..+++.+|++
T Consensus        12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   91 (195)
T 1x3s_A           12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV   91 (195)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            345799999999999999999999988764 4556665443  3444443  7899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC-CHHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL-TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL  166 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (185)
                      ++|+|++++.++..+..|+..+.......+.|+++|+||+|+.... ...+......      ..+++++++||+++.|+
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi  165 (195)
T 1x3s_A           92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR------KHSMLFIEASAKTCDGV  165 (195)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH------HTTCEEEECCTTTCTTH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHH------HcCCEEEEecCCCCCCH
Confidence            9999999999999998888888766545679999999999995432 2223222211      14568999999999999


Q ss_pred             HHHHHHHHHHHhhhccc
Q 029920          167 LEGFDWLVQDIASRIYL  183 (185)
Q Consensus       167 ~~l~~~l~~~~~~~~~~  183 (185)
                      ++++++|.+.+.+....
T Consensus       166 ~~l~~~l~~~~~~~~~~  182 (195)
T 1x3s_A          166 QCAFEELVEKIIQTPGL  182 (195)
T ss_dssp             HHHHHHHHHHHHTSGGG
T ss_pred             HHHHHHHHHHHHhhhhh
Confidence            99999999998765443

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.98  E-value=1.1e-30  Score=182.04  Aligned_cols=162  Identities=18%  Similarity=0.200  Sum_probs=126.0

Q ss_pred             hhccCceeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcceEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920           10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLGFNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDG   86 (185)
Q Consensus        10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~   86 (185)
                      ...+.+.+||+++|++|||||||++++.+..+.. +.++.+.....+.+++  +.+.+|||+|++.+.     +++.+|+
T Consensus        14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~   88 (184)
T 3ihw_A           14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA   88 (184)
T ss_dssp             --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred             CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence            4456778999999999999999999999887753 5556554445666666  677889999998876     6778999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC----CCCHHHHHHhcCcccccCccceEEEeecccC
Q 029920           87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING----ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYT  162 (185)
Q Consensus        87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (185)
                      +++|||++++.+++.+..|+..+.......+.|+++|+||+|+..    ....++......     .....+++++||++
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~-----~~~~~~~~e~Sa~~  163 (184)
T 3ihw_A           89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLST-----DLKRCTYYETCATY  163 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHH-----HTTTCEEEEEBTTT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHH-----HcCCCeEEEecCCC
Confidence            999999999999999999888887764446799999999999842    222333332221     11236899999999


Q ss_pred             CCCHHHHHHHHHHHHhhhc
Q 029920          163 GEGLLEGFDWLVQDIASRI  181 (185)
Q Consensus       163 ~~~i~~l~~~l~~~~~~~~  181 (185)
                      |.|++++|+++.+.+.++.
T Consensus       164 ~~gv~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          164 GLNVERVFQDVAQKVVALR  182 (184)
T ss_dssp             TBTHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHHHh
Confidence            9999999999999887653

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.98  E-value=8.7e-31  Score=184.91  Aligned_cols=161  Identities=22%  Similarity=0.334  Sum_probs=125.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      .+..++|+++|++|+|||||+++|.+..+. .+.+|.+  +....+.+++  ..+.+|||||++.+...+..+++.+|++
T Consensus        26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (201)
T 2hup_A           26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA  105 (201)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence            456799999999999999999999988774 4456655  4455566665  6899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccce-EEEeecccCCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHW-KIVGCSAYTGE  164 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  164 (185)
                      ++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...++.......      .++ +++++||++|.
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~------~~~~~~~~~SA~~g~  178 (201)
T 2hup_A          106 ILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEH------YDILCAIETSAKDSS  178 (201)
T ss_dssp             EEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH------TTCSEEEECBTTTTB
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHH------cCCCEEEEEeCCCCC
Confidence            99999999999999888887776542 357999999999998652  233333332211      345 89999999999


Q ss_pred             CHHHHHHHHHHHHhhh
Q 029920          165 GLLEGFDWLVQDIASR  180 (185)
Q Consensus       165 ~i~~l~~~l~~~~~~~  180 (185)
                      |++++|++|.+.+.++
T Consensus       179 gi~~l~~~l~~~i~~~  194 (201)
T 2hup_A          179 NVEEAFLRVATELIMR  194 (201)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999988654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.97  E-value=1.3e-30  Score=181.13  Aligned_cols=162  Identities=17%  Similarity=0.238  Sum_probs=128.6

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ..+.++|+++|++|+|||||+++|.+..+. .+.++.+.. ......++  ..+.+|||||++.+...+..+++.+|+++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   94 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   94 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            556899999999999999999999987664 444555533 33344454  45677999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeeccc-CCCC
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAY-TGEG  165 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~  165 (185)
                      +|+|++++++++.+..|+..+.......+.|+++|+||+|+.+.  ...++......      ..+++++++||+ ++.|
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~~~  168 (183)
T 3kkq_A           95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT------KYNIPYIETSAKDPPLN  168 (183)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH------HHTCCEEEEBCSSSCBS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH------HhCCeEEEeccCCCCCC
Confidence            99999999999999998888877655668999999999998653  23333322221      145679999999 9999


Q ss_pred             HHHHHHHHHHHHhhh
Q 029920          166 LLEGFDWLVQDIASR  180 (185)
Q Consensus       166 i~~l~~~l~~~~~~~  180 (185)
                      ++++|++|.+.+.++
T Consensus       169 v~~l~~~l~~~i~~q  183 (183)
T 3kkq_A          169 VDKTFHDLVRVIRQQ  183 (183)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhC
Confidence            999999999988653

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.97  E-value=1.8e-30  Score=181.68  Aligned_cols=164  Identities=17%  Similarity=0.318  Sum_probs=130.9

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE---EEEEc-----------CeEEEEEEcCCchhhHHH
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK---TVTYQ-----------KYTLNIWDVGGQRTIRSY   76 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~---~~~~~-----------~~~~~~~D~~g~~~~~~~   76 (185)
                      ..+..++|+|+|++|+|||||+++|.+..+. ...++.+....   .+..+           ...+.+|||||++.+...
T Consensus         7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   86 (195)
T 3bc1_A            7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL   86 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred             ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence            3566899999999999999999999987764 45566665443   34444           368999999999999999


Q ss_pred             HHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceE
Q 029920           77 WRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWK  154 (185)
Q Consensus        77 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~  154 (185)
                      +..+++.+|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+.  ...++......      ..+++
T Consensus        87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~  160 (195)
T 3bc1_A           87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAE------KYGIP  160 (195)
T ss_dssp             HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHH------HHTCC
T ss_pred             HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH------HcCCC
Confidence            99999999999999999999999998888888776544468999999999998652  22333332221      13567


Q ss_pred             EEeecccCCCCHHHHHHHHHHHHhhhc
Q 029920          155 IVGCSAYTGEGLLEGFDWLVQDIASRI  181 (185)
Q Consensus       155 ~~~~Sa~~~~~i~~l~~~l~~~~~~~~  181 (185)
                      ++++||++|.|+++++++|.+.+.++.
T Consensus       161 ~~~~Sa~~~~~v~~l~~~l~~~~~~~~  187 (195)
T 3bc1_A          161 YFETSAANGTNISHAIEMLLDLIMKRM  187 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999886543

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.97  E-value=2.4e-30  Score=178.70  Aligned_cols=164  Identities=17%  Similarity=0.274  Sum_probs=127.3

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE--EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN--IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDG   86 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~   86 (185)
                      +....++|+++|++|+|||||++++.+..+. ...++.+..  ...+..++  ..+.+|||||++.+...+..+++.+|+
T Consensus         3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T 1wms_A            3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   82 (177)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence            3567899999999999999999999987764 455666644  34455555  689999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhccc---cCCCeEEEEeecCCCCCC-CCHHHHHHhcCcccccCccceEEEeecccC
Q 029920           87 LVWVVDSSDLRRLDDCKMELDNLLKEER---LSGASLLILANKQDINGA-LTPTEIAKVLNLEAMDKTRHWKIVGCSAYT  162 (185)
Q Consensus        87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (185)
                      +++|+|++++.++.....|+..+.....   ..+.|+++|+||+|+... ...++.......     ...++++++||++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~  157 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD-----NGDYPYFETSAKD  157 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH-----TTCCCEEECCTTT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh-----cCCceEEEEeCCC
Confidence            9999999999999888887777755432   257899999999998643 233333332211     1456899999999


Q ss_pred             CCCHHHHHHHHHHHHhhh
Q 029920          163 GEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       163 ~~~i~~l~~~l~~~~~~~  180 (185)
                      |.|++++++++.+.+.++
T Consensus       158 ~~gi~~l~~~l~~~~~~~  175 (177)
T 1wms_A          158 ATNVAAAFEEAVRRVLAT  175 (177)
T ss_dssp             CTTHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            999999999999988653

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.97  E-value=1.7e-30  Score=178.14  Aligned_cols=159  Identities=19%  Similarity=0.224  Sum_probs=116.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCcc---cccCcceEEEEEEEcC--eEEEEEEcCCchhhHH-HHHhhhcCCCEEEE
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTSV---ISPTLGFNIKTVTYQK--YTLNIWDVGGQRTIRS-YWRNYFEQTDGLVW   89 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~~---~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~-~~~~~~~~~d~~i~   89 (185)
                      .+||+++|++|+|||||+++|.+.....   ...+.......+..++  ..+.+|||||++.+.. .+..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            5899999999999999999998766542   2233445555555655  6788999999988765 66777889999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      |+|++++++++....|+..+.......+.|+++|+||+|+.+.  ....+......      ..+++++++||++|.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~v~  155 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG------TLSCKHIETSAALHHNTR  155 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH------HTTCEEEECBTTTTBSHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHH------HcCCcEEEecCccCCCHH
Confidence            9999999999999999998887655568999999999998632  22222222111      145689999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 029920          168 EGFDWLVQDIASR  180 (185)
Q Consensus       168 ~l~~~l~~~~~~~  180 (185)
                      ++|+++.+.+..+
T Consensus       156 ~l~~~l~~~i~~~  168 (169)
T 3q85_A          156 ELFEGAVRQIRLR  168 (169)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988654

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.97  E-value=2.5e-30  Score=176.77  Aligned_cols=159  Identities=20%  Similarity=0.298  Sum_probs=124.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      +.++|+++|++|+|||||+++|.+..+. .+.++.+... ..+..++  ..+.+|||||++.+...+..+++.+|++++|
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence            5799999999999999999999987764 3445555333 2344544  5899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      +|+++++++.....|+..+.......+.|+++|+||+|+.+.  ...++......      ..+++++++||++|.|+++
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~  156 (168)
T 1u8z_A           83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD------QWNVNYVETSAKTRANVDK  156 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH------HHTCEEEECCTTTCTTHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHH------HcCCeEEEeCCCCCCCHHH
Confidence            999999999999888888877655567999999999998643  22333332221      1456899999999999999


Q ss_pred             HHHHHHHHHhh
Q 029920          169 GFDWLVQDIAS  179 (185)
Q Consensus       169 l~~~l~~~~~~  179 (185)
                      +++++.+.+.+
T Consensus       157 l~~~l~~~i~~  167 (168)
T 1u8z_A          157 VFFDLMREIRA  167 (168)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.97  E-value=1.7e-30  Score=181.12  Aligned_cols=162  Identities=20%  Similarity=0.319  Sum_probs=126.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce-EEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF-NIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~-~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      ...++|+++|++|+|||||+++|.+..+. .+.++... ....+..++  ..+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            46799999999999999999999987764 33444442 233444555  457889999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (185)
                      |+|++++.++.....|+..+.......+.|+++|+||+|+.+.....+....+...     .+++++++||++|.|++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~g~gi~~l  156 (189)
T 4dsu_A           82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARS-----YGIPFIETSAKTRQGVDDA  156 (189)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHH-----HTCCEEECCTTTCTTHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHH-----cCCeEEEEeCCCCCCHHHH
Confidence            99999999999999988888776666789999999999997544333333222211     4567999999999999999


Q ss_pred             HHHHHHHHhhh
Q 029920          170 FDWLVQDIASR  180 (185)
Q Consensus       170 ~~~l~~~~~~~  180 (185)
                      +++|.+.+.+.
T Consensus       157 ~~~l~~~~~~~  167 (189)
T 4dsu_A          157 FYTLVREIRKH  167 (189)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=2.2e-31  Score=182.42  Aligned_cols=158  Identities=22%  Similarity=0.322  Sum_probs=125.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      +.++|+++|++|+|||||++++.+..+. ...++.+...  ..+..++  ..+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            3689999999999999999999988764 4556666443  3445544  589999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC-----CHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL-----TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE  164 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (185)
                      |+|++++.++.....|+..+.... ..+.|+++|+||+|+....     ...+... +.     ...+++++++||++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~-~~-----~~~~~~~~~~Sa~~~~  154 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEK-LA-----EEKGLLFFETSAKTGE  154 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHH-HH-----HHHTCEEEECCTTTCT
T ss_pred             EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHH-HH-----HHcCCEEEEEeCCCCC
Confidence            999999999999888888776653 3579999999999986431     1122211 11     1145689999999999


Q ss_pred             CHHHHHHHHHHHHhh
Q 029920          165 GLLEGFDWLVQDIAS  179 (185)
Q Consensus       165 ~i~~l~~~l~~~~~~  179 (185)
                      |+++++++|.+.+.+
T Consensus       155 gi~~l~~~l~~~i~~  169 (170)
T 1ek0_A          155 NVNDVFLGIGEKIPL  169 (170)
T ss_dssp             THHHHHHHHHTTSCC
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999876643

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2.6e-30  Score=182.50  Aligned_cols=163  Identities=20%  Similarity=0.245  Sum_probs=128.7

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce--EEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF--NIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDG   86 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~   86 (185)
                      .....++|+++|++|+|||||+++|.+..+. ...++.+.  ....+.+++  +.+.+|||||++.+...+..+++.+|+
T Consensus        22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  101 (201)
T 2ew1_A           22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA  101 (201)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence            3456799999999999999999999887775 45566653  344555655  689999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920           87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE  164 (185)
Q Consensus        87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (185)
                      +++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.  ...++.....      ...+++++++||++|.
T Consensus       102 ~i~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~Sa~~g~  174 (201)
T 2ew1_A          102 LILTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFS------EAQDMYYLETSAKESD  174 (201)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHH------HHHTCCEEECCTTTCT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHH------HHcCCEEEEEeCCCCC
Confidence            99999999999999888887776554 2357899999999998643  2223322211      1145689999999999


Q ss_pred             CHHHHHHHHHHHHhhhc
Q 029920          165 GLLEGFDWLVQDIASRI  181 (185)
Q Consensus       165 ~i~~l~~~l~~~~~~~~  181 (185)
                      |++++|++|.+.+.++.
T Consensus       175 gv~~l~~~l~~~i~~~~  191 (201)
T 2ew1_A          175 NVEKLFLDLACRLISEA  191 (201)
T ss_dssp             THHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999886643

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.97  E-value=3e-30  Score=179.48  Aligned_cols=165  Identities=20%  Similarity=0.289  Sum_probs=129.5

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920           11 KKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDG   86 (185)
Q Consensus        11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~   86 (185)
                      ....+.++|+++|++|+|||||+++|.+..+. .+.++.+... ..+..++  +.+.+|||||++.+...+..+++.+|+
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (187)
T 2a9k_A           13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   92 (187)
T ss_dssp             ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence            34567899999999999999999999987764 3445555333 3345554  589999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920           87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE  164 (185)
Q Consensus        87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (185)
                      +++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.  ....+......      ..+++++++||+++.
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~  166 (187)
T 2a9k_A           93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE------QWNVNYVETSAKTRA  166 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHH------HTTCEEEECCTTTCT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH------HcCCeEEEeCCCCCC
Confidence            9999999999999999988888877655557999999999998643  23333333221      145689999999999


Q ss_pred             CHHHHHHHHHHHHhhhc
Q 029920          165 GLLEGFDWLVQDIASRI  181 (185)
Q Consensus       165 ~i~~l~~~l~~~~~~~~  181 (185)
                      |+++++++|.+.+.++.
T Consensus       167 gi~~l~~~l~~~i~~~~  183 (187)
T 2a9k_A          167 NVDKVFFDLMREIRARK  183 (187)
T ss_dssp             THHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            99999999999887653

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.97  E-value=1.7e-30  Score=181.90  Aligned_cols=162  Identities=21%  Similarity=0.336  Sum_probs=126.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      ....+||+++|++|+|||||+++|.+..+.. ..++.+  +....+..++  ..+.+|||||++.+...+..+++.+|++
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   97 (191)
T 2a5j_A           18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA   97 (191)
T ss_dssp             TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence            4457899999999999999999999887753 344444  4444556655  6899999999999988888999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      ++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.  ...++......      ..+++++++||++|.|
T Consensus        98 i~v~d~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~g  170 (191)
T 2a5j_A           98 LLVYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFAR------EHGLIFMETSAKTACN  170 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH------HHTCEEEEECTTTCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCCccccCHHHHHHHHH------HcCCEEEEEeCCCCCC
Confidence            9999999999999988888777654 2357999999999998642  22333322211      1456899999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 029920          166 LLEGFDWLVQDIASRI  181 (185)
Q Consensus       166 i~~l~~~l~~~~~~~~  181 (185)
                      ++++|++|.+.+.++.
T Consensus       171 i~~l~~~l~~~i~~~~  186 (191)
T 2a5j_A          171 VEEAFINTAKEIYRKI  186 (191)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999887653

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.97  E-value=4.5e-31  Score=185.20  Aligned_cols=162  Identities=22%  Similarity=0.295  Sum_probs=125.2

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCcccc-----------cCcceEEEEEE-----EcCeEEEEEEcCCchhhHH
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTSVIS-----------PTLGFNIKTVT-----YQKYTLNIWDVGGQRTIRS   75 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~-----------~t~~~~~~~~~-----~~~~~~~~~D~~g~~~~~~   75 (185)
                      .....+||+++|++|+|||||++.+.+.....+.           +|.+.......     .....+.+|||||++.+..
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~   89 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA   89 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence            3566899999999999999999888776655432           23333322211     1236899999999999999


Q ss_pred             HHHhhhcCCCEEEEEEeCC------CcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccC
Q 029920           76 YWRNYFEQTDGLVWVVDSS------DLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDK  149 (185)
Q Consensus        76 ~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~  149 (185)
                      .+..+++.+|++++|||++      +.+++..+..|+..+.  ....+.|+++|+||+|+.+....++.......     
T Consensus        90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-----  162 (198)
T 3t1o_A           90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP-----  162 (198)
T ss_dssp             HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCT-----
T ss_pred             HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHHh-----
Confidence            9999999999999999999      4456666666665552  13357999999999999887677666655543     


Q ss_pred             ccce-EEEeecccCCCCHHHHHHHHHHHHhhhc
Q 029920          150 TRHW-KIVGCSAYTGEGLLEGFDWLVQDIASRI  181 (185)
Q Consensus       150 ~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  181 (185)
                       .++ +++++||++|.|++++|++|.+.+.++.
T Consensus       163 -~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~  194 (198)
T 3t1o_A          163 -EGKFPVLEAVATEGKGVFETLKEVSRLVLARV  194 (198)
T ss_dssp             -TCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             -cCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence             445 8999999999999999999999887654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.97  E-value=1.4e-30  Score=180.02  Aligned_cols=162  Identities=21%  Similarity=0.344  Sum_probs=127.4

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC---eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK---YTLNIWDVGGQRTIRSYWRNYFEQTDG   86 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~---~~~~~~D~~g~~~~~~~~~~~~~~~d~   86 (185)
                      ..+.++|+++|++|+|||||+++|.+..+. .+.+|.+  +....+.+++   ..+.+|||||++.+...+..+++.+|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            457899999999999999999999988774 4456655  5556667665   799999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhccc-c-CCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccC
Q 029920           87 LVWVVDSSDLRRLDDCKMELDNLLKEER-L-SGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYT  162 (185)
Q Consensus        87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~-~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (185)
                      +++|+|++++.+++.+..|+..+..... . ...|+++|+||+|+.+.  ...++......      ..+++++++||++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~  156 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ------ENGFSSHFVSAKT  156 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHH------HHTCEEEEECTTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHH------HcCCcEEEEeCCC
Confidence            9999999999999888877777655321 1 23448999999998643  22233222211      1456899999999


Q ss_pred             CCCHHHHHHHHHHHHhhh
Q 029920          163 GEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       163 ~~~i~~l~~~l~~~~~~~  180 (185)
                      |.|++++|++|.+.+.+.
T Consensus       157 ~~gi~~l~~~l~~~~~~~  174 (178)
T 2hxs_A          157 GDSVFLCFQKVAAEILGI  174 (178)
T ss_dssp             CTTHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            999999999999988664

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.97  E-value=2.7e-30  Score=177.03  Aligned_cols=160  Identities=19%  Similarity=0.283  Sum_probs=126.5

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      +.+.++|+++|++|+|||||+++|.+..+. ...++.+...  ..+..+  ...+.+|||||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            456799999999999999999999987765 3445665443  334444  46899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      ++|+|++++.++.....|+..+... ..++.|+++|+||+|+.+.  ...++......      ..+++++++||++|.|
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~g~g  155 (170)
T 1r2q_A           83 IVVYDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSYAD------DNSLLFMETSAKTSMN  155 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH------HTTCEEEECCTTTCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCccccccCHHHHHHHHH------HcCCeEEEEeCCCCCC
Confidence            9999999999999988888877665 3357999999999998543  22233322211      1567899999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 029920          166 LLEGFDWLVQDIAS  179 (185)
Q Consensus       166 i~~l~~~l~~~~~~  179 (185)
                      +++++++|.+.+.+
T Consensus       156 i~~l~~~i~~~~~~  169 (170)
T 1r2q_A          156 VNEIFMAIAKKLPK  169 (170)
T ss_dssp             HHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999887643

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.97  E-value=8e-31  Score=182.12  Aligned_cols=161  Identities=23%  Similarity=0.389  Sum_probs=101.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      .+..++|+++|++|+|||||+++|.+..+. ...++.+  +....+.+++  ..+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (183)
T 2fu5_C            5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   84 (183)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence            356799999999999999999999987764 4455555  3344556666  7899999999999988888999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      ++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+..  ..++......      ..+++++++||++|.|
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~~  157 (183)
T 2fu5_C           85 MLVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLAL------DYGIKFMETSAKANIN  157 (183)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHH------HHTCEEEECCC---CC
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHHH------HcCCeEEEEeCCCCCC
Confidence            9999999999999988888777654 23479999999999996532  2333332221      1456899999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 029920          166 LLEGFDWLVQDIASR  180 (185)
Q Consensus       166 i~~l~~~l~~~~~~~  180 (185)
                      ++++|++|.+.+.++
T Consensus       158 i~~l~~~l~~~i~~~  172 (183)
T 2fu5_C          158 VENAFFTLARDIKAK  172 (183)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.97  E-value=1.7e-30  Score=180.14  Aligned_cols=163  Identities=17%  Similarity=0.267  Sum_probs=127.6

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCC-cccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDT-SVISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ..+.++|+++|++|+|||||+++|.++.+ ..+.++.+... ..+..++  +.+.+|||||++.+...+..+++.+|+++
T Consensus         3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            45689999999999999999999996655 45566666443 3345555  67899999999998888889999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL  166 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (185)
                      +|+|++++++++.+..|+..+.......+.|+++|+||+|+.+..  ..++......      ..+++++++||++|.|+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~v  156 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE------SWNAAFLESSAKENQTA  156 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHH------HTTCEEEECCTTSHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHH------HhCCcEEEEecCCCCCH
Confidence            999999999999999998888777666689999999999986432  2233222221      14568999999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q 029920          167 LEGFDWLVQDIASRI  181 (185)
Q Consensus       167 ~~l~~~l~~~~~~~~  181 (185)
                      +++|+++.+.+.+..
T Consensus       157 ~~l~~~l~~~~~~~~  171 (181)
T 3t5g_A          157 VDVFRRIILEAEKMD  171 (181)
T ss_dssp             HHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999887643

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.97  E-value=1.5e-30  Score=182.54  Aligned_cols=170  Identities=21%  Similarity=0.284  Sum_probs=124.8

Q ss_pred             HHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEEcC--eEEEEEEcCCchhhHHHHHhhh
Q 029920            6 IIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTYQK--YTLNIWDVGGQRTIRSYWRNYF   81 (185)
Q Consensus         6 ~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~   81 (185)
                      +...+......++|+++|++|+|||||+++|.+..+. .+.+|.+.... .+..++  +.+.+|||||++.+...+..++
T Consensus        13 ~~~~~~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   92 (194)
T 3reg_A           13 GAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSY   92 (194)
T ss_dssp             --------CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGC
T ss_pred             ccccccccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhc
Confidence            3344555677899999999999999999999988774 44566664433 334444  5679999999999999999999


Q ss_pred             cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC----CCHHHHHHhcCcccccCccceE-EE
Q 029920           82 EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA----LTPTEIAKVLNLEAMDKTRHWK-IV  156 (185)
Q Consensus        82 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~  156 (185)
                      +.+|++++|+|++++.++..+...|...+.. ...+.|+++|+||+|+.+.    ...++.......      .+++ ++
T Consensus        93 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~~  165 (194)
T 3reg_A           93 ADSDVVLLCFAVNNRTSFDNISTKWEPEIKH-YIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQK------LGCVAYI  165 (194)
T ss_dssp             TTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHH------HTCSCEE
T ss_pred             cCCcEEEEEEECCCHHHHHHHHHHHHHHHHH-hCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHh------cCCCEEE
Confidence            9999999999999999999974444444443 2357999999999998643    223333222211      3344 99


Q ss_pred             eecccCCCCHHHHHHHHHHHHhhhcc
Q 029920          157 GCSAYTGEGLLEGFDWLVQDIASRIY  182 (185)
Q Consensus       157 ~~Sa~~~~~i~~l~~~l~~~~~~~~~  182 (185)
                      ++||++|.|++++|++|.+.+.++.+
T Consensus       166 ~~Sa~~~~gi~~l~~~l~~~i~~~~~  191 (194)
T 3reg_A          166 EASSVAKIGLNEVFEKSVDCIFSNKP  191 (194)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHCSCC
T ss_pred             EeecCCCCCHHHHHHHHHHHHHhcCC
Confidence            99999999999999999998876543

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=4.6e-30  Score=177.69  Aligned_cols=163  Identities=19%  Similarity=0.329  Sum_probs=120.6

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCc--ccccCcceEEE--EEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCC
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS--VISPTLGFNIK--TVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTD   85 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~--~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d   85 (185)
                      ..+..++|+++|++|+|||||+++|.+..+.  ...++.+....  .+..++  ..+.+|||||++.+...+..+++.+|
T Consensus         6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   85 (180)
T 2g6b_A            6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   85 (180)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence            3567899999999999999999999988774  44566664433  334554  58999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCC
Q 029920           86 GLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTG  163 (185)
Q Consensus        86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (185)
                      ++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+..  ..++......      ..+++++++||++|
T Consensus        86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~  158 (180)
T 2g6b_A           86 ALLLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAK------EYGLPFMETSAKTG  158 (180)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHH------HHTCCEEECCTTTC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccCcccccCHHHHHHHHH------HcCCeEEEEeCCCC
Confidence            9999999999999998888877776542 2579999999999987542  2222222111      14568999999999


Q ss_pred             CCHHHHHHHHHHHHhhhc
Q 029920          164 EGLLEGFDWLVQDIASRI  181 (185)
Q Consensus       164 ~~i~~l~~~l~~~~~~~~  181 (185)
                      .|++++++++.+.+.++.
T Consensus       159 ~gi~~l~~~l~~~~~~~~  176 (180)
T 2g6b_A          159 LNVDLAFTAIAKELKRRS  176 (180)
T ss_dssp             TTHHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            999999999999887654

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.97  E-value=3.7e-30  Score=180.53  Aligned_cols=162  Identities=21%  Similarity=0.388  Sum_probs=129.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      .+..++|+++|++|+|||||+++|.+..+. ...++.+  .....+..++  +.+.+|||||++.+...+..+++.+|++
T Consensus        13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   92 (196)
T 3tkl_A           13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   92 (196)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence            456799999999999999999999988764 4445555  3444556665  6899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH--HHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP--TEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      ++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+....  .+......      ..+++++++||++|.|
T Consensus        93 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~g~g  165 (196)
T 3tkl_A           93 IVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD------SLGIPFLETSAKNATN  165 (196)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH------HTTCCEEEECTTTCTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccCHHHHHHHHH------HcCCcEEEEeCCCCCC
Confidence            9999999999999988887776554 3357899999999998654322  22222111      1456899999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 029920          166 LLEGFDWLVQDIASRI  181 (185)
Q Consensus       166 i~~l~~~l~~~~~~~~  181 (185)
                      ++++|++|.+.+.++.
T Consensus       166 v~~l~~~l~~~i~~~~  181 (196)
T 3tkl_A          166 VEQSFMTMAAEIKKRM  181 (196)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999987654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.97  E-value=5.2e-30  Score=177.29  Aligned_cols=158  Identities=14%  Similarity=0.168  Sum_probs=120.5

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      ..+.+||+++|++|+|||||+++|.+..+..+.+|.+.. ...+..++  ..+.+|||||++.     ..+++.+|++++
T Consensus         4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il   78 (178)
T 2iwr_A            4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF   78 (178)
T ss_dssp             CCCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence            457899999999999999999999998887777777643 33455554  6789999999986     356788999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhcc--ccCCCeEEEEeecCCCCC----CCCHHHHHHhcCcccccCccceEEEeecccCC
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEE--RLSGASLLILANKQDING----ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTG  163 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~~ivv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (185)
                      |||+++++++..+..|+..+....  ..++.|+++|+||+|+..    ....++......     ...+++++++||++|
T Consensus        79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~Sa~~~  153 (178)
T 2iwr_A           79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXA-----DMKRCSYYETXATYG  153 (178)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH-----HHSSEEEEEEBTTTT
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHH-----hhcCCeEEEEecccc
Confidence            999999999999888654443321  225789999999999842    222333332211     113578999999999


Q ss_pred             CCHHHHHHHHHHHHhhh
Q 029920          164 EGLLEGFDWLVQDIASR  180 (185)
Q Consensus       164 ~~i~~l~~~l~~~~~~~  180 (185)
                      .|++++|+++.+.+.+.
T Consensus       154 ~~i~~lf~~l~~~~~~~  170 (178)
T 2iwr_A          154 LNVDRVFQEVAQKVVTL  170 (178)
T ss_dssp             BTHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999999987654

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.97  E-value=8.9e-30  Score=176.38  Aligned_cols=164  Identities=19%  Similarity=0.277  Sum_probs=126.6

Q ss_pred             hhccCceeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCC
Q 029920           10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQT   84 (185)
Q Consensus        10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   84 (185)
                      .......++|+++|++|+|||||+++|.+..+.. ..++.+  +....+..++  ..+.+|||||++.+...+..+++.+
T Consensus         6 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   85 (181)
T 2efe_B            6 AGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA   85 (181)
T ss_dssp             ----CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTC
T ss_pred             CCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccC
Confidence            3446678999999999999999999999887753 335554  3344455543  6899999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccC
Q 029920           85 DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYT  162 (185)
Q Consensus        85 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (185)
                      |++++|+|++++.+++....|+..+... ..++.|+++|+||+|+.+..  ..++......      ..+++++++||++
T Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~  158 (181)
T 2efe_B           86 AAAIIVFDVTNQASFERAKKWVQELQAQ-GNPNMVMALAGNKSDLLDARKVTAEDAQTYAQ------ENGLFFMETSAKT  158 (181)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH------HTTCEEEECCSSS
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECCcccccccCCHHHHHHHHH------HcCCEEEEEECCC
Confidence            9999999999999999988888877665 33579999999999986532  2333332221      1456899999999


Q ss_pred             CCCHHHHHHHHHHHHhhh
Q 029920          163 GEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       163 ~~~i~~l~~~l~~~~~~~  180 (185)
                      |.|+++++++|.+.+.+.
T Consensus       159 g~gi~~l~~~l~~~~~~~  176 (181)
T 2efe_B          159 ATNVKEIFYEIARRLPRV  176 (181)
T ss_dssp             CTTHHHHHHHHHHTCC--
T ss_pred             CCCHHHHHHHHHHHHHhc
Confidence            999999999999887654

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.97  E-value=1.9e-30  Score=177.38  Aligned_cols=159  Identities=16%  Similarity=0.247  Sum_probs=125.4

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      +.++|+++|++|+|||||+++|.+..+. .+.++.+.... .+..+  ...+.+|||||++.+...+..+++.+|++++|
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            4689999999999999999999987764 44555554332 23333  46899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      +|++++.+++....|+..+.......+.|+++|+||+|+.+..  ..++......     .....+++++||++|.|+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~  156 (167)
T 1c1y_A           82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR-----QWCNCAFLESSAKSKINVNE  156 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTSCEEEECBTTTTBSHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHH-----HccCCcEEEecCCCCCCHHH
Confidence            9999999999988888888776555689999999999986532  2223322211     11367899999999999999


Q ss_pred             HHHHHHHHHh
Q 029920          169 GFDWLVQDIA  178 (185)
Q Consensus       169 l~~~l~~~~~  178 (185)
                      ++++|.+.+.
T Consensus       157 l~~~l~~~i~  166 (167)
T 1c1y_A          157 IFYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.97  E-value=1.1e-29  Score=175.49  Aligned_cols=160  Identities=19%  Similarity=0.291  Sum_probs=126.4

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce--EEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF--NIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      ..+.++|+++|++|+|||||+++|.+..+. ...++.+.  ....+..++  ..+.+|||||++.+...+..+++.+|++
T Consensus        12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (179)
T 1z0f_A           12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (179)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence            566899999999999999999999988764 34455553  344445544  6899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      ++|+|++++.+++....|+..+... ...+.|+++|+||+|+.+.  ...++......      ..+++++++||++|.|
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~g  164 (179)
T 1z0f_A           92 LMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFAE------ENGLLFLEASAKTGEN  164 (179)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH------HTTCEEEECCTTTCTT
T ss_pred             EEEEeCcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHH------HcCCEEEEEeCCCCCC
Confidence            9999999999999888887776554 3357999999999998643  22333332221      1456899999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 029920          166 LLEGFDWLVQDIAS  179 (185)
Q Consensus       166 i~~l~~~l~~~~~~  179 (185)
                      ++++|+++.+.+.+
T Consensus       165 i~~l~~~l~~~i~~  178 (179)
T 1z0f_A          165 VEDAFLEAAKKIYQ  178 (179)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988754

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.97  E-value=7.8e-30  Score=177.48  Aligned_cols=162  Identities=22%  Similarity=0.325  Sum_probs=128.4

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce--EEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF--NIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      .++.++|+++|++|+|||||+++|.+..+. ...++.+.  ....+..++  ..+.+|||||++.+...+..+++.+|++
T Consensus         7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   86 (186)
T 2bme_A            7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   86 (186)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence            456799999999999999999999988775 34455553  334455555  6899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      ++|+|++++.++..+..|+..+... ...+.|+++|+||+|+...  ....+......      ..+++++++||++|.|
T Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~g  159 (186)
T 2bme_A           87 LLVYDITSRETYNALTNWLTDARML-ASQNIVIILCGNKKDLDADREVTFLEASRFAQ------ENELMFLETSALTGEN  159 (186)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH------HTTCEEEECCTTTCTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHH------HcCCEEEEecCCCCCC
Confidence            9999999999999888887776543 2357999999999998542  22233322211      1557899999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 029920          166 LLEGFDWLVQDIASRI  181 (185)
Q Consensus       166 i~~l~~~l~~~~~~~~  181 (185)
                      ++++|+++.+.+.++.
T Consensus       160 i~~l~~~l~~~~~~~~  175 (186)
T 2bme_A          160 VEEAFVQCARKILNKI  175 (186)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999887654

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.97  E-value=9.9e-30  Score=179.66  Aligned_cols=164  Identities=20%  Similarity=0.291  Sum_probs=130.2

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920           11 KKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDG   86 (185)
Q Consensus        11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~   86 (185)
                      .+..+.++|+|+|++|+|||||+++|.+..+. .+.++.+.. ...+..++  +.+.+|||||++.+...+..+++.+|+
T Consensus         9 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   88 (206)
T 2bov_A            9 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   88 (206)
T ss_dssp             --CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence            34567899999999999999999999987764 445555533 23445555  589999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920           87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE  164 (185)
Q Consensus        87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (185)
                      +++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.  ....+......      ..+++++++||++|.
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~g~  162 (206)
T 2bov_A           89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE------QWNVNYVETSAKTRA  162 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH------HHTCEEEEECTTTCT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHH------HhCCeEEEEeCCCCC
Confidence            9999999999999999888888877655568999999999998653  22333332221      145689999999999


Q ss_pred             CHHHHHHHHHHHHhhh
Q 029920          165 GLLEGFDWLVQDIASR  180 (185)
Q Consensus       165 ~i~~l~~~l~~~~~~~  180 (185)
                      |++++|++|.+.+.++
T Consensus       163 gi~~l~~~l~~~i~~~  178 (206)
T 2bov_A          163 NVDKVFFDLMREIRAR  178 (206)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHc
Confidence            9999999999988653

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.97  E-value=1.7e-30  Score=185.24  Aligned_cols=163  Identities=20%  Similarity=0.351  Sum_probs=127.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE--EEEEEEc------------CeEEEEEEcCCchhhHHHH
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN--IKTVTYQ------------KYTLNIWDVGGQRTIRSYW   77 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~--~~~~~~~------------~~~~~~~D~~g~~~~~~~~   77 (185)
                      .++.++|+|+|++|+|||||+++|.+..+. .+.++.+..  ...+.++            ...+.+|||||++.+...+
T Consensus        22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~  101 (217)
T 2f7s_A           22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT  101 (217)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence            456799999999999999999999988774 344555432  2333333            5689999999999999999


Q ss_pred             HhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEE
Q 029920           78 RNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKI  155 (185)
Q Consensus        78 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~  155 (185)
                      ..+++.+|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+..  ...+......      ..++++
T Consensus       102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~------~~~~~~  175 (217)
T 2f7s_A          102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD------KYGIPY  175 (217)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH------HTTCCE
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHH------HCCCcE
Confidence            99999999999999999999999888887766554333679999999999986532  2222222211      145679


Q ss_pred             EeecccCCCCHHHHHHHHHHHHhhhc
Q 029920          156 VGCSAYTGEGLLEGFDWLVQDIASRI  181 (185)
Q Consensus       156 ~~~Sa~~~~~i~~l~~~l~~~~~~~~  181 (185)
                      +++||+++.|+++++++|.+.+.++.
T Consensus       176 ~~~Sa~~g~gi~~l~~~l~~~i~~~~  201 (217)
T 2f7s_A          176 FETSAATGQNVEKAVETLLDLIMKRM  201 (217)
T ss_dssp             EEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999886643

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.97  E-value=4.8e-30  Score=182.58  Aligned_cols=165  Identities=24%  Similarity=0.332  Sum_probs=120.7

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEc---CeEEEEEEcCCchhhHH-HHHhhhcCCCEE
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQ---KYTLNIWDVGGQRTIRS-YWRNYFEQTDGL   87 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~D~~g~~~~~~-~~~~~~~~~d~~   87 (185)
                      ...+.++|+++|++|+|||||+++|++..+....++.......+.++   ...+.+|||||++.+.. .+..+++.+|++
T Consensus         3 ~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   82 (214)
T 2fh5_B            3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV   82 (214)
T ss_dssp             -----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence            35678999999999999999999999888765555555555556666   67899999999999887 788889999999


Q ss_pred             EEEEeCCCcc-cHHHHHHHHHHHHhcc--ccCCCeEEEEeecCCCCCCCCHHHHHHhcCc--------------------
Q 029920           88 VWVVDSSDLR-RLDDCKMELDNLLKEE--RLSGASLLILANKQDINGALTPTEIAKVLNL--------------------  144 (185)
Q Consensus        88 i~v~d~~~~~-s~~~~~~~~~~~~~~~--~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~--------------------  144 (185)
                      ++|+|+++.. ++.....++...+...  ...+.|+++|+||+|+............+..                    
T Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~  162 (214)
T 2fh5_B           83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS  162 (214)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC----------
T ss_pred             EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCc
Confidence            9999999853 4666666666665432  2346899999999999876554433222210                    


Q ss_pred             ----------ccccC-c--cceEEEeecccCC------CCHHHHHHHHHHH
Q 029920          145 ----------EAMDK-T--RHWKIVGCSAYTG------EGLLEGFDWLVQD  176 (185)
Q Consensus       145 ----------~~~~~-~--~~~~~~~~Sa~~~------~~i~~l~~~l~~~  176 (185)
                                ..++. .  ..+++++|||++|      .|++++|++|.+.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          163 TAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             --CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             cccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                      00111 0  1788999999999      9999999999875

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.97  E-value=6.7e-30  Score=180.05  Aligned_cols=160  Identities=24%  Similarity=0.352  Sum_probs=127.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE--EEEEEEcC------------------------------
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN--IKTVTYQK------------------------------   59 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~--~~~~~~~~------------------------------   59 (185)
                      .+..++|+|+|++|+|||||+++|.+..+. .+.++.+..  ...+..++                              
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            467899999999999999999999988774 444555533  33344333                              


Q ss_pred             ---------eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC
Q 029920           60 ---------YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN  130 (185)
Q Consensus        60 ---------~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  130 (185)
                               ..+.+|||||++.+...+..+++.+|++++|+|++++.++.....|+..+....   +.|+++|+||+|..
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~~  160 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDKN  160 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTCC
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCcc
Confidence                     789999999999999999999999999999999999999999888888776643   49999999999943


Q ss_pred             C-CCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHHhhhc
Q 029920          131 G-ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI  181 (185)
Q Consensus       131 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  181 (185)
                      . ....++.......      .+++++++||++|.|+++++++|.+.+.++.
T Consensus       161 ~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  206 (208)
T 3clv_A          161 KFQVDILEVQKYAQD------NNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI  206 (208)
T ss_dssp             -CCSCHHHHHHHHHH------TTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHH------cCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            2 2233444333221      4568999999999999999999999887764

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.97  E-value=2e-30  Score=179.46  Aligned_cols=161  Identities=21%  Similarity=0.347  Sum_probs=127.1

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDG   86 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~   86 (185)
                      ...+.++|+++|++|+|||||+++|.+..+. ...++.+  .....+..++  ..+.+|||||++.+...+..+++.+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   84 (181)
T 3tw8_B            5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG   84 (181)
T ss_dssp             -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence            3567899999999999999999999998775 3445555  4445566666  789999999999999889999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920           87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE  164 (185)
Q Consensus        87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (185)
                      +++|+|++++.++..+..|+..+....  ++.|+++|+||+|+.+..  ...+......      ..+++++++||++|.
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~  156 (181)
T 3tw8_B           85 VIVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAG------QMGIQLFETSAKENV  156 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHH------HHTCCEEECBTTTTB
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHHH------HcCCeEEEEECCCCC
Confidence            999999999999999988888776543  479999999999986532  2222222111      145689999999999


Q ss_pred             CHHHHHHHHHHHHhhh
Q 029920          165 GLLEGFDWLVQDIASR  180 (185)
Q Consensus       165 ~i~~l~~~l~~~~~~~  180 (185)
                      |+++++++|.+.+.+.
T Consensus       157 gi~~l~~~l~~~~~~~  172 (181)
T 3tw8_B          157 NVEEMFNCITELVLRA  172 (181)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999987653

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.97  E-value=2.7e-30  Score=182.04  Aligned_cols=164  Identities=24%  Similarity=0.383  Sum_probs=118.1

Q ss_pred             hhccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCC
Q 029920           10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQT   84 (185)
Q Consensus        10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   84 (185)
                      .....+.++|+++|++|+|||||+++|.+..+. .+.++.+  +....+..++  ..+.+|||||++.+...+..+++.+
T Consensus        22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~  101 (199)
T 2p5s_A           22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKA  101 (199)
T ss_dssp             ------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHC
T ss_pred             CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhC
Confidence            334566799999999999999999999988764 4555555  3334455554  6799999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC--------CCCHHHHHHhcCcccccCccceEEE
Q 029920           85 DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING--------ALTPTEIAKVLNLEAMDKTRHWKIV  156 (185)
Q Consensus        85 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  156 (185)
                      |++++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+        ....++... +.     ...+++++
T Consensus       102 d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~-~~-----~~~~~~~~  174 (199)
T 2p5s_A          102 DGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEK-LA-----MTYGALFC  174 (199)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHH-HH-----HHHTCEEE
T ss_pred             CEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHH-HH-----HHcCCeEE
Confidence            9999999999999999888877665443 334789999999999852        111222211 11     11456899


Q ss_pred             eecccCCCCHHHHHHHHHHHHhhh
Q 029920          157 GCSAYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       157 ~~Sa~~~~~i~~l~~~l~~~~~~~  180 (185)
                      ++||++|.|++++|++|.+.+.++
T Consensus       175 ~~SA~~g~gv~el~~~l~~~i~~~  198 (199)
T 2p5s_A          175 ETSAKDGSNIVEAVLHLAREVKKR  198 (199)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHTC-
T ss_pred             EeeCCCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999999988653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.97  E-value=1.5e-30  Score=178.38  Aligned_cols=161  Identities=25%  Similarity=0.402  Sum_probs=122.5

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      ..++|+++|++|+|||||+++|.+..+. ...++.+  +....+..++  ..+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            5689999999999999999999988764 3445554  3344455544  689999999999988888899999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (185)
                      |+|++++.++.....|+..+... ...+.|+++|+||+|+.......+....+..     ..+++++++||++|.|++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l  155 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPFIESSAKNDDNVNEI  155 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTCCSCHHHHHHHHH-----HHTCCEEECBTTTTBSHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCCcCccCHHHHHHHHH-----HcCCeEEEEECCCCCCHHHH
Confidence            99999999998888887777654 2357899999999999543222222222211     14568999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 029920          170 FDWLVQDIASRI  181 (185)
Q Consensus       170 ~~~l~~~~~~~~  181 (185)
                      +++|.+.+.++.
T Consensus       156 ~~~l~~~~~~~~  167 (170)
T 1g16_A          156 FFTLAKLIQEKI  167 (170)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHh
Confidence            999999887653

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.97  E-value=2e-30  Score=181.24  Aligned_cols=162  Identities=19%  Similarity=0.359  Sum_probs=127.2

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      .+..++|+++|++|+|||||+++|.+..+. ...++.+...  ..+..+  ...+.+|||||++.+...+..+++.+|++
T Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   98 (189)
T 2gf9_A           19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   98 (189)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence            445799999999999999999999988774 4456666443  334443  36899999999999988899999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      ++|+|++++.+++....|+..+... ...+.|+++|+||+|+.+..  ..++......      ..+++++++||++|.|
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~g~g  171 (189)
T 2gf9_A           99 LLMYDIANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRRLAD------DLGFEFFEASAKENIN  171 (189)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH------HHTCEEEECBTTTTBS
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccCCCHHHHHHHHH------HcCCeEEEEECCCCCC
Confidence            9999999999999888887776554 23579999999999986532  2222222211      1456899999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 029920          166 LLEGFDWLVQDIASRI  181 (185)
Q Consensus       166 i~~l~~~l~~~~~~~~  181 (185)
                      +++++++|.+.+.++.
T Consensus       172 i~~l~~~l~~~i~~~~  187 (189)
T 2gf9_A          172 VKQVFERLVDVICEKM  187 (189)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999887653

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.97  E-value=8.3e-30  Score=179.11  Aligned_cols=165  Identities=20%  Similarity=0.229  Sum_probs=122.9

Q ss_pred             hhccCceeEEEEEcCCCCChHHHHHHHhCCCCc-cccc--CcceEEEEEEEcC--eEEEEEEcCCchhhHH-HHHhhhcC
Q 029920           10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISP--TLGFNIKTVTYQK--YTLNIWDVGGQRTIRS-YWRNYFEQ   83 (185)
Q Consensus        10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~--t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~-~~~~~~~~   83 (185)
                      .......++|+++|++|||||||+++|.+.... ...+  +.......+.+++  +.+.+|||+|++.+.. ++..+++.
T Consensus        17 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~   96 (195)
T 3cbq_A           17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQT   96 (195)
T ss_dssp             -----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHH
T ss_pred             CCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhcc
Confidence            334567899999999999999999999865442 2222  2234444555655  5788999999987654 77788899


Q ss_pred             CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeeccc
Q 029920           84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAY  161 (185)
Q Consensus        84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (185)
                      +|++++|||++++.+|..+..|+..+.......+.|+++|+||+|+.+..  ..++... +.     ...+++++++||+
T Consensus        97 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~a-----~~~~~~~~e~Sa~  170 (195)
T 3cbq_A           97 GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH-LA-----GTLSCKHIETSAA  170 (195)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHH-HH-----HHTTCEEEEEBTT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHH-HH-----HHhCCEEEEEcCC
Confidence            99999999999999999999998887665444579999999999996532  2223222 11     1134689999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh
Q 029920          162 TGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~~  180 (185)
                      +|.|++++|+++++.+.+.
T Consensus       171 ~~~~v~~lf~~l~~~i~~~  189 (195)
T 3cbq_A          171 LHHNTRELFEGAVRQIRLR  189 (195)
T ss_dssp             TTBSHHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            9999999999999988654

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.97  E-value=4.7e-30  Score=177.61  Aligned_cols=163  Identities=17%  Similarity=0.276  Sum_probs=130.2

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ..+.++|+++|++|+|||||+++|.+..+. .+.++.+... ..+..++  ..+.+|||||++.+...+..+++.+|+++
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   85 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   85 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence            567899999999999999999999987664 4455555433 3345554  57899999999999888999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL  166 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (185)
                      +|+|++++.++..+..|+..++......+.|+++|+||+|+.+..  ...+... +.     ...+++++++||++|.|+
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~-----~~~~~~~~~~Sa~~~~gv  159 (181)
T 2fn4_A           86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA-FG-----ASHHVAYFEASAKLRLNV  159 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHH-HH-----HHTTCEEEECBTTTTBSH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH-HH-----HHcCCeEEEecCCCCCCH
Confidence            999999999999999998888776555689999999999986532  2222222 11     114668999999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q 029920          167 LEGFDWLVQDIASRI  181 (185)
Q Consensus       167 ~~l~~~l~~~~~~~~  181 (185)
                      ++++++|.+.+.+..
T Consensus       160 ~~l~~~l~~~~~~~~  174 (181)
T 2fn4_A          160 DEAFEQLVRAVRKYQ  174 (181)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999886643

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.97  E-value=9.1e-30  Score=178.40  Aligned_cols=162  Identities=25%  Similarity=0.358  Sum_probs=122.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce--EEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF--NIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      ....++|+++|++|+|||||+++|.+..+. ...++.+.  ....+..++  ..+.+|||||++.+...+..+++.+|++
T Consensus        23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i  102 (192)
T 2il1_A           23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI  102 (192)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            556799999999999999999999988774 34555553  344455555  6899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      ++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+..  ..++.....     ....+.+++++||++|.|
T Consensus       103 ilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~~SA~~g~g  176 (192)
T 2il1_A          103 ILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFA-----QQITGMRFCEASAKDNFN  176 (192)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HTSTTCEEEECBTTTTBS
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHH-----HhcCCCeEEEEeCCCCCC
Confidence            9999999999999887776655433 34579999999999986432  222222211     111367899999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 029920          166 LLEGFDWLVQDIASR  180 (185)
Q Consensus       166 i~~l~~~l~~~~~~~  180 (185)
                      +++++++|.+.+.++
T Consensus       177 i~~l~~~l~~~i~~~  191 (192)
T 2il1_A          177 VDEIFLKLVDDILKK  191 (192)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999988764

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.97  E-value=1.4e-29  Score=178.64  Aligned_cols=161  Identities=19%  Similarity=0.347  Sum_probs=127.6

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      ....++|+|+|++|+|||||+++|.+..+. ...++.+...  ..+..+  ...+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   84 (203)
T 1zbd_A            5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF   84 (203)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence            346799999999999999999999998874 4556666443  334444  36899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      ++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+..  ..++......      ..+++++++||++|.|
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~g  157 (203)
T 1zbd_A           85 ILMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLAD------HLGFEFFEASAKDNIN  157 (203)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHH------HHTCEEEECBTTTTBS
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCcccccCHHHHHHHHH------HCCCeEEEEECCCCCC
Confidence            9999999999999888887776554 23579999999999996542  2222222211      1356899999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 029920          166 LLEGFDWLVQDIASR  180 (185)
Q Consensus       166 i~~l~~~l~~~~~~~  180 (185)
                      ++++|++|.+.+.++
T Consensus       158 i~~l~~~l~~~i~~~  172 (203)
T 1zbd_A          158 VKQTFERLVDVICEK  172 (203)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999987654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=5e-30  Score=180.20  Aligned_cols=164  Identities=22%  Similarity=0.315  Sum_probs=126.7

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920           11 KKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDG   86 (185)
Q Consensus        11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~   86 (185)
                      ....+.++|+++|++|+|||||+++|.+..+. .+.++.+.... .+..++  ..+.+|||||++. ...+..+++.+|+
T Consensus        23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~  101 (196)
T 2atv_A           23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG  101 (196)
T ss_dssp             ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence            33567899999999999999999999988774 44556554332 244444  6799999999987 7778888999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920           87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE  164 (185)
Q Consensus        87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (185)
                      +++|||++++++++.+..|+..+.......+.|+++|+||+|+.+.  ...++......      ..+++++++||++|.
T Consensus       102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~g~  175 (196)
T 2atv_A          102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT------ELACAFYECSACTGE  175 (196)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH------HHTSEEEECCTTTCT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHH------HhCCeEEEECCCcCC
Confidence            9999999999999998888888776544568999999999998653  22233222111      145689999999999


Q ss_pred             -CHHHHHHHHHHHHhhhc
Q 029920          165 -GLLEGFDWLVQDIASRI  181 (185)
Q Consensus       165 -~i~~l~~~l~~~~~~~~  181 (185)
                       |++++|++|.+.+.++.
T Consensus       176 ~gi~~l~~~l~~~i~~~~  193 (196)
T 2atv_A          176 GNITEIFYELCREVRRRR  193 (196)
T ss_dssp             TCHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhhc
Confidence             99999999999887654

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.97  E-value=4.4e-30  Score=176.14  Aligned_cols=160  Identities=23%  Similarity=0.301  Sum_probs=119.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      ....++|+++|++|+|||||++++.+..+. ...++.+...  ..+..++  +.+.+|||||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            456799999999999999999999988764 4556665433  3444443  6889999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      ++|+|++++.+++....|+..+... ...+.|+++|+||+|+.+.  ...++......      ..+++++++||++|.|
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~g  155 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESYAE------SVGAKHYHTSAKQNKG  155 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHH------HTTCEEEEEBTTTTBS
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccccCHHHHHHHHH------HcCCeEEEecCCCCCC
Confidence            9999999999999988887776543 2347999999999998653  22333332211      1456899999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 029920          166 LLEGFDWLVQDIAS  179 (185)
Q Consensus       166 i~~l~~~l~~~~~~  179 (185)
                      +++++++|.+.+.+
T Consensus       156 i~~l~~~l~~~~~~  169 (170)
T 1z08_A          156 IEELFLDLCKRMIE  169 (170)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988754

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.97  E-value=9.1e-30  Score=174.47  Aligned_cols=160  Identities=23%  Similarity=0.313  Sum_probs=126.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      ..+.++|+++|++|+|||||+++|.+..+. .+.++.+...  ..+...+  ..+.+|||||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            356799999999999999999999988864 4566666443  3344444  7899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      ++|+|++++.++.....|+..+... ..++.|+++|+||+|+.+...  .++......      ..+.+++++||++|.|
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~~  155 (170)
T 1z0j_A           83 IIVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYAD------SIHAIFVETSAKNAIN  155 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHH------HTTCEEEECBTTTTBS
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHHH------HcCCEEEEEeCCCCcC
Confidence            9999999999999888777776553 346799999999999865322  222222111      1457899999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 029920          166 LLEGFDWLVQDIAS  179 (185)
Q Consensus       166 i~~l~~~l~~~~~~  179 (185)
                      +++++++|.+.+.+
T Consensus       156 i~~l~~~i~~~i~~  169 (170)
T 1z0j_A          156 INELFIEISRRIPS  169 (170)
T ss_dssp             HHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999987643

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.8e-30  Score=181.76  Aligned_cols=162  Identities=19%  Similarity=0.365  Sum_probs=127.6

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEE--cCeEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTY--QKYTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      .+..+||+|+|++|+|||||+++|.+..+. ...++.+  +....+..  ....+.+|||||++.+...+..+++.+|++
T Consensus        20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   99 (191)
T 3dz8_A           20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF   99 (191)
T ss_dssp             EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred             cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence            456799999999999999999999987764 3444444  33334433  458899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      ++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+..  ...+......      ..+++++++||++|.|
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~g  172 (191)
T 3dz8_A          100 ILMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLLAE------QLGFDFFEASAKENIS  172 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH------HHTCEEEECBTTTTBS
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHH------HcCCeEEEEECCCCCC
Confidence            9999999999999888877776553 34579999999999985432  2222222111      1456899999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 029920          166 LLEGFDWLVQDIASRI  181 (185)
Q Consensus       166 i~~l~~~l~~~~~~~~  181 (185)
                      ++++|++|.+.+.++.
T Consensus       173 i~~l~~~l~~~i~~~~  188 (191)
T 3dz8_A          173 VRQAFERLVDAICDKM  188 (191)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999987764

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.97  E-value=6.9e-30  Score=178.45  Aligned_cols=161  Identities=19%  Similarity=0.339  Sum_probs=124.2

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhH-HHHHhhhcCCCE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIR-SYWRNYFEQTDG   86 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~-~~~~~~~~~~d~   86 (185)
                      ..+.++|+++|++|+|||||+++|.+..+. ...++.+  +....+..++  ..+.+|||||++.+. ..+..+++.+|+
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~   96 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA   96 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence            456799999999999999999999987775 3445555  3444556655  689999999999988 788899999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCC-
Q 029920           87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTG-  163 (185)
Q Consensus        87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-  163 (185)
                      +++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+..  ..++... +..     ..+++++++||+++ 
T Consensus        97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~~-----~~~~~~~~~Sa~~~~  170 (189)
T 1z06_A           97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQK-FAD-----THSMPLFETSAKNPN  170 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHH-HHH-----HTTCCEEECCSSSGG
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHH-HHH-----HcCCEEEEEeCCcCC
Confidence            99999999999999999888888776555689999999999986432  2222222 211     14568999999999 


Q ss_pred             --CCHHHHHHHHHHHHhh
Q 029920          164 --EGLLEGFDWLVQDIAS  179 (185)
Q Consensus       164 --~~i~~l~~~l~~~~~~  179 (185)
                        .|++++|++|.+.+.+
T Consensus       171 ~~~~i~~l~~~l~~~i~~  188 (189)
T 1z06_A          171 DNDHVEAIFMTLAHKLKS  188 (189)
T ss_dssp             GGSCHHHHHHHHC-----
T ss_pred             cccCHHHHHHHHHHHHhh
Confidence              9999999999887654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.97  E-value=1.8e-30  Score=183.25  Aligned_cols=163  Identities=17%  Similarity=0.201  Sum_probs=124.4

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEE-E--EEcCeEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKT-V--TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~-~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      ...+.+||+++|++|+|||||+++|.+..+. .+.++.+..... +  ....+.+.+|||||++.+...+..+++.+|++
T Consensus        20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   99 (201)
T 3oes_A           20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY   99 (201)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred             CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence            3567899999999999999999999988775 344555533322 2  23458899999999999988899999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      ++|||++++.+++.+..|+..+.......++|+++|+||+|+.+...  ..+.....      ...+++++++||++|.|
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~Sa~~~~~  173 (201)
T 3oes_A          100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLA------ESWGATFMESSARENQL  173 (201)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHH------HHHTCEEEECCTTCHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHH------HHhCCeEEEEeCCCCCC
Confidence            99999999999999999988887765566899999999999864322  22222111      11456899999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 029920          166 LLEGFDWLVQDIASR  180 (185)
Q Consensus       166 i~~l~~~l~~~~~~~  180 (185)
                      ++++|++|.+.+.+.
T Consensus       174 v~~l~~~l~~~i~~~  188 (201)
T 3oes_A          174 TQGIFTKVIQEIARV  188 (201)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999988654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.97  E-value=7.6e-30  Score=178.75  Aligned_cols=162  Identities=18%  Similarity=0.312  Sum_probs=127.6

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      ....++|+|+|++|+|||||+++|.+..+. ...++.+...  ..+..+  ...+.+|||||++.+...+..+++.+|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v  101 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA  101 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            455799999999999999999999988775 3455655433  333443  47899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      ++|+|++++.++..+..|+..+... ...+.|+++|+||+|+...  ....+......      ..+++++++||++|.|
T Consensus       102 i~v~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~g  174 (193)
T 2oil_A          102 LLVFDLTKHQTYAVVERWLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARMFAE------NNGLLFLETSALDSTN  174 (193)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHTT-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH------HTTCEEEEECTTTCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECCCcccccccCHHHHHHHHH------HcCCEEEEEeCCCCCC
Confidence            9999999999999888888777654 2357999999999998643  22233322211      1456899999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 029920          166 LLEGFDWLVQDIASRI  181 (185)
Q Consensus       166 i~~l~~~l~~~~~~~~  181 (185)
                      +++++++|.+.+.++.
T Consensus       175 i~~l~~~l~~~i~~~~  190 (193)
T 2oil_A          175 VELAFETVLKEIFAKV  190 (193)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999887653

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.97  E-value=2.2e-30  Score=177.21  Aligned_cols=159  Identities=16%  Similarity=0.281  Sum_probs=125.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      .+..++|+++|++|+|||||+++|.+..+. .+.++.+  +....+..++  ..+.+|||||++.+...+..+++.+|++
T Consensus         2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   81 (168)
T 1z2a_A            2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC   81 (168)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred             CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence            356899999999999999999999987764 4455554  4444555554  6899999999999888888999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      ++|+|++++.+++....|+..+....  .+.|+++|+||+|+.+.  ...++......      ..+++++++||+++.|
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~  153 (168)
T 1z2a_A           82 VLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAK------RLKLRFYRTSVKEDLN  153 (168)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHH------HHTCEEEECBTTTTBS
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHH------HcCCeEEEEecCCCCC
Confidence            99999999999998888887776653  57999999999998643  22333332221      1456899999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 029920          166 LLEGFDWLVQDIAS  179 (185)
Q Consensus       166 i~~l~~~l~~~~~~  179 (185)
                      +++++++|.+.+.+
T Consensus       154 i~~l~~~l~~~~~~  167 (168)
T 1z2a_A          154 VSEVFKYLAEKHLQ  167 (168)
T ss_dssp             SHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988754

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.97  E-value=6.6e-30  Score=174.51  Aligned_cols=159  Identities=18%  Similarity=0.267  Sum_probs=125.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      +.++|+++|++|+|||||++++.++.+. .+.++.+.. ...+..++  ..+.+|||||++.+...+..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            4689999999999999999999887764 344554432 33445554  4699999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      +|++++.+++....++..+.......+.|+++|+||+|+.+..  ...+......      ..+++++++||++|.|+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~  155 (167)
T 1kao_A           82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE------EWGCPFMETSAKSKTMVDE  155 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH------HHTSCEEEECTTCHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHH------HhCCCEEEecCCCCcCHHH
Confidence            9999999999999988888776555689999999999985432  2222222111      1356799999999999999


Q ss_pred             HHHHHHHHHhh
Q 029920          169 GFDWLVQDIAS  179 (185)
Q Consensus       169 l~~~l~~~~~~  179 (185)
                      ++++|.+.+.+
T Consensus       156 l~~~l~~~~~~  166 (167)
T 1kao_A          156 LFAEIVRQMNY  166 (167)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999988754

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.97  E-value=2.3e-30  Score=184.43  Aligned_cols=163  Identities=17%  Similarity=0.206  Sum_probs=123.0

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEE-EEE--cCeEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920           11 KKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKT-VTY--QKYTLNIWDVGGQRTIRSYWRNYFEQTDG   86 (185)
Q Consensus        11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~   86 (185)
                      ......+||+++|++|+|||||+++|.+..+. .+.+|.+..... +..  ..+.+.+|||||++.+...+..+++.+|+
T Consensus        22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  101 (214)
T 3q3j_B           22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA  101 (214)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence            34566799999999999999999999988775 446676654432 223  34789999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHH-HHHHHHHHHhccccCCCeEEEEeecCCCCCC--------------CCHHHHHHhcCcccccCcc
Q 029920           87 LVWVVDSSDLRRLDD-CKMELDNLLKEERLSGASLLILANKQDINGA--------------LTPTEIAKVLNLEAMDKTR  151 (185)
Q Consensus        87 ~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~  151 (185)
                      +++|||+++++++.. ...|+..+...  .++.|+++|+||+|+.+.              ...++.....      ...
T Consensus       102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~  173 (214)
T 3q3j_B          102 VLLCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIA------KQL  173 (214)
T ss_dssp             EEEEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHH------HHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHH------HHc
Confidence            999999999999998 46666665443  357999999999998642              2222222211      114


Q ss_pred             ce-EEEeecccCCCC-HHHHHHHHHHHHhhhc
Q 029920          152 HW-KIVGCSAYTGEG-LLEGFDWLVQDIASRI  181 (185)
Q Consensus       152 ~~-~~~~~Sa~~~~~-i~~l~~~l~~~~~~~~  181 (185)
                      ++ +++++||++|.| ++++|+++.+.+.+..
T Consensus       174 ~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~  205 (214)
T 3q3j_B          174 GAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP  205 (214)
T ss_dssp             TCSEEEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred             CCCEEEEeccCCCcccHHHHHHHHHHHHhccC
Confidence            55 899999999998 9999999999887654

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.97  E-value=1.8e-29  Score=178.59  Aligned_cols=161  Identities=22%  Similarity=0.387  Sum_probs=128.2

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      .+..++|+|+|++|+|||||+++|.+..+. .+.++.+  +....+..++  +.+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v   84 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   84 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence            456799999999999999999999988775 3445555  3444555655  5899999999999998899999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      ++|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+..  ..++......      ..+++++++||++|.|
T Consensus        85 ilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~g~g  157 (206)
T 2bcg_Y           85 IIVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD------ANKMPFLETSALDSTN  157 (206)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH------HTTCCEEECCTTTCTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHH------HcCCeEEEEeCCCCCC
Confidence            9999999999999988888777554 23579999999999997532  2222222211      1456899999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 029920          166 LLEGFDWLVQDIASR  180 (185)
Q Consensus       166 i~~l~~~l~~~~~~~  180 (185)
                      ++++|++|.+.+.+.
T Consensus       158 i~~l~~~l~~~i~~~  172 (206)
T 2bcg_Y          158 VEDAFLTMARQIKES  172 (206)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=7.9e-30  Score=179.25  Aligned_cols=165  Identities=16%  Similarity=0.218  Sum_probs=125.6

Q ss_pred             hhccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCC
Q 029920           10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTD   85 (185)
Q Consensus        10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d   85 (185)
                      +.+....++|+++|++|+|||||+++|.+..+. .+.++.+.... .+..+  ...+.+|||||++.+...+..+++.+|
T Consensus         2 m~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   81 (199)
T 2gf0_A            2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGH   81 (199)
T ss_dssp             ---CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCS
T ss_pred             CccCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCC
Confidence            344567899999999999999999999987765 44556554333 23333  358999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhccc-cCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecccCC
Q 029920           86 GLVWVVDSSDLRRLDDCKMELDNLLKEER-LSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSAYTG  163 (185)
Q Consensus        86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (185)
                      ++++|+|++++.++.....++..+..... ..+.|+++|+||+|+..... ..+... +..     ..+++++++||++|
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~-----~~~~~~~~~Sa~~~  155 (199)
T 2gf0_A           82 AFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQA-VAQ-----EWKCAFMETSAKMN  155 (199)
T ss_dssp             EEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHH-HHH-----HHTCEEEECBTTTT
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHH-HHH-----HhCCeEEEEecCCC
Confidence            99999999999999888877666554322 24689999999999875322 222222 111     14568999999999


Q ss_pred             CCHHHHHHHHHHHHhhh
Q 029920          164 EGLLEGFDWLVQDIASR  180 (185)
Q Consensus       164 ~~i~~l~~~l~~~~~~~  180 (185)
                      .|+++++++|.+.+.++
T Consensus       156 ~gi~~l~~~l~~~~~~~  172 (199)
T 2gf0_A          156 YNVKELFQELLTLETRR  172 (199)
T ss_dssp             BSHHHHHHHHHHHCSSS
T ss_pred             CCHHHHHHHHHHHHhhh
Confidence            99999999999987654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.97  E-value=6.8e-30  Score=180.17  Aligned_cols=162  Identities=22%  Similarity=0.344  Sum_probs=122.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      .+..++|+|+|++|+|||||+++|.+..+. ...++.+  +....+..++  ..+.+|||||++.+...+..+++.+|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  101 (200)
T 2o52_A           22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA  101 (200)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence            456799999999999999999999988774 3445544  4445556665  7899999999998888888899999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      ++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+...  ....+.....      ...+++++++||++|.|
T Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~SA~~g~g  174 (200)
T 2o52_A          102 LLVYDITSRETYNSLAAWLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLEASRFA------QENELMFLETSALTGEN  174 (200)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-TCTTCEEEEEEECGGGGGGCCSCHHHHHHHH------HHTTCEEEEECTTTCTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECCCcccccccCHHHHHHHH------HHcCCEEEEEeCCCCCC
Confidence            9999999999999988888777554 2357999999999998543  2223332221      11457899999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 029920          166 LLEGFDWLVQDIASRI  181 (185)
Q Consensus       166 i~~l~~~l~~~~~~~~  181 (185)
                      ++++|++|.+.+.++.
T Consensus       175 i~~l~~~l~~~i~~~~  190 (200)
T 2o52_A          175 VEEAFLKCARTILNKI  190 (200)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999886543

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=3.9e-29  Score=177.52  Aligned_cols=162  Identities=16%  Similarity=0.193  Sum_probs=119.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCC--cccccCcc--eEEEEEEEcC--eEEEEEEcCCchh-hHHHHHhhhcCCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDT--SVISPTLG--FNIKTVTYQK--YTLNIWDVGGQRT-IRSYWRNYFEQTD   85 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~--~~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~~~~d   85 (185)
                      ....+||+++|++|+|||||+++|.+...  ....++.+  +....+.+++  +.+.+|||+|.+. ...+...+++.+|
T Consensus        34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~  113 (211)
T 2g3y_A           34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD  113 (211)
T ss_dssp             -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence            45679999999999999999999997544  22222333  3344556665  4678999999876 4556677788999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCC
Q 029920           86 GLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTG  163 (185)
Q Consensus        86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (185)
                      ++++|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.  ....+.. .+     +...+++++++||++|
T Consensus       114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~-~~-----a~~~~~~~~e~SAk~g  187 (211)
T 2g3y_A          114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGR-AC-----AVVFDCKFIETSAAVQ  187 (211)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHH-HH-----HHHHTCEEEECBTTTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHH-HH-----HHHcCCEEEEEeCCCC
Confidence            99999999999999999888777765434457999999999998642  2222211 11     1114568999999999


Q ss_pred             CCHHHHHHHHHHHHhhh
Q 029920          164 EGLLEGFDWLVQDIASR  180 (185)
Q Consensus       164 ~~i~~l~~~l~~~~~~~  180 (185)
                      .|++++|++|.+.+..+
T Consensus       188 ~~v~elf~~l~~~i~~~  204 (211)
T 2g3y_A          188 HNVKELFEGIVRQVRLR  204 (211)
T ss_dssp             BSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999987543

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=7.4e-30  Score=181.25  Aligned_cols=163  Identities=24%  Similarity=0.390  Sum_probs=125.4

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDG   86 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~   86 (185)
                      .....++|+|+|++|+|||||+++|.+..+. ...++.+  +....+..++  ..+.+|||||++.+...+..+++.+|+
T Consensus        16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (213)
T 3cph_A           16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG   95 (213)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence            3456799999999999999999999987764 4445555  4445566666  689999999999998888999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920           87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL  166 (185)
Q Consensus        87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (185)
                      +++|+|++++.++..+..|+..+... ...+.|+++|+||+|+.......+....+..     ..+++++++||++|.|+
T Consensus        96 ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi  169 (213)
T 3cph_A           96 IILVYDVTDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPFIESSAKNDDNV  169 (213)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHH-TTTCSEEEEEEECTTCSSCCSCHHHHHHHHH-----HHTCCEEECBTTTTBSS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCcccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCH
Confidence            99999999999998888887776554 2346899999999999533222222221211     13457999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 029920          167 LEGFDWLVQDIASR  180 (185)
Q Consensus       167 ~~l~~~l~~~~~~~  180 (185)
                      ++++++|.+.+.++
T Consensus       170 ~~l~~~l~~~~~~~  183 (213)
T 3cph_A          170 NEIFFTLAKLIQEK  183 (213)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988664

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.97  E-value=1.1e-29  Score=175.45  Aligned_cols=161  Identities=20%  Similarity=0.337  Sum_probs=125.5

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDG   86 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~   86 (185)
                      .+.+.++|+++|++|+|||||+++|.+..+. ...++.+  +....+..++  ..+.+|||||++.+...+..+++.+|+
T Consensus        10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   89 (179)
T 2y8e_A           10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV   89 (179)
T ss_dssp             --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence            3456799999999999999999999977764 3445555  3344455555  689999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920           87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE  164 (185)
Q Consensus        87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (185)
                      +++|+|++++.++.....|+..+... ...+.|+++|+||+|+.+..  ...+......      ..+++++++||++|.
T Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~  162 (179)
T 2y8e_A           90 AVVVYDITNTNSFHQTSKWIDDVRTE-RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK------ELNVMFIETSAKAGY  162 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHH-HTTSSEEEEEEECGGGGGGCCSCHHHHHHHHH------HHTCEEEEEBTTTTB
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECCcccccCcCCHHHHHHHHH------HcCCeEEEEeCCCCC
Confidence            99999999999999988888877654 23579999999999986432  2223222211      145689999999999


Q ss_pred             CHHHHHHHHHHHHhh
Q 029920          165 GLLEGFDWLVQDIAS  179 (185)
Q Consensus       165 ~i~~l~~~l~~~~~~  179 (185)
                      |+++++++|.+.+.+
T Consensus       163 ~i~~l~~~l~~~~~~  177 (179)
T 2y8e_A          163 NVKQLFRRVAAALPG  177 (179)
T ss_dssp             SHHHHHHHHHHTCC-
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999987654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.97  E-value=1.9e-29  Score=171.94  Aligned_cols=159  Identities=18%  Similarity=0.325  Sum_probs=124.7

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      +.++|+++|++|+|||||++++.+..+. ...++.+.. ...+..++  ..+.+|||||++.+...+..++..+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            3589999999999999999999887764 344444433 23344444  5689999999999888999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (185)
                      +|++++.++.....|+..+.......+.|+++|+||+|+.+... .++......      ..+++++++||++|.|++++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l  155 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR------SYGIPYIETSAKTRQGVEDA  155 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH------HHTCCEEEECTTTCTTHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH------HcCCeEEEecCCCCCCHHHH
Confidence            99999999999888888776655445799999999999865332 223222211      14567999999999999999


Q ss_pred             HHHHHHHHhh
Q 029920          170 FDWLVQDIAS  179 (185)
Q Consensus       170 ~~~l~~~~~~  179 (185)
                      +++|.+.+.+
T Consensus       156 ~~~l~~~~~~  165 (166)
T 2ce2_X          156 FYTLVREIRQ  165 (166)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.97  E-value=5.9e-30  Score=182.57  Aligned_cols=165  Identities=20%  Similarity=0.272  Sum_probs=125.7

Q ss_pred             hhccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEEEEE--c-C--eEEEEEEcCCchhhHHHHHhhhcC
Q 029920           10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKTVTY--Q-K--YTLNIWDVGGQRTIRSYWRNYFEQ   83 (185)
Q Consensus        10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~~~~--~-~--~~~~~~D~~g~~~~~~~~~~~~~~   83 (185)
                      +......+||+++|++|+|||||+++|.+..+. .+.++.+........  . +  ..+.+|||||++.+...+..++..
T Consensus         5 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   84 (218)
T 4djt_A            5 MERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIG   84 (218)
T ss_dssp             -----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred             cccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhc
Confidence            344667899999999999999999999987764 445666655544433  1 1  789999999999988888899999


Q ss_pred             CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeeccc
Q 029920           84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAY  161 (185)
Q Consensus        84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (185)
                      +|++++|+|++++.+++....|+..+... ...+.|+++|+||+|+.+..  ..........      ..+++++++||+
T Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~  157 (218)
T 4djt_A           85 ASGAILFFDVTSRITCQNLARWVKEFQAV-VGNEAPIVVCANKIDIKNRQKISKKLVMEVLK------GKNYEYFEISAK  157 (218)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHH-HCSSSCEEEEEECTTCC----CCHHHHHHHTT------TCCCEEEEEBTT
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHH------HcCCcEEEEecC
Confidence            99999999999999999888877776554 33458999999999986542  2222222221      256789999999


Q ss_pred             CCCCHHHHHHHHHHHHhhhc
Q 029920          162 TGEGLLEGFDWLVQDIASRI  181 (185)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~~~  181 (185)
                      +|.|++++|++|.+.+.+..
T Consensus       158 ~g~gv~~l~~~l~~~~~~~~  177 (218)
T 4djt_A          158 TAHNFGLPFLHLARIFTGRP  177 (218)
T ss_dssp             TTBTTTHHHHHHHHHHHCCT
T ss_pred             CCCCHHHHHHHHHHHHhccc
Confidence            99999999999999887643

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.97  E-value=1.1e-29  Score=175.83  Aligned_cols=164  Identities=20%  Similarity=0.314  Sum_probs=115.8

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEc---CeEEEEEEcCCchhhHHHHHhhhcCCC
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQ---KYTLNIWDVGGQRTIRSYWRNYFEQTD   85 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d   85 (185)
                      ...+.++|+++|++|+|||||+++|.+..+. .+.++.+  +....+..+   ...+.+|||||++.+...+..+++.+|
T Consensus         4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (182)
T 1ky3_A            4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD   83 (182)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred             ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence            3567899999999999999999999988764 3445544  444445444   378999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhccc---cCCCeEEEEeecCCCCCCC---CHHHHHHhcCcccccCccceEEEeec
Q 029920           86 GLVWVVDSSDLRRLDDCKMELDNLLKEER---LSGASLLILANKQDINGAL---TPTEIAKVLNLEAMDKTRHWKIVGCS  159 (185)
Q Consensus        86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~ivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (185)
                      ++++|+|++++.+++....|+..+.....   ..+.|+++|+||+|+....   ...+......     .....+++++|
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~-----~~~~~~~~~~S  158 (182)
T 1ky3_A           84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK-----SLGDIPLFLTS  158 (182)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH-----HTTSCCEEEEB
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH-----hcCCCeEEEEe
Confidence            99999999999999998888887765432   2578999999999985321   2222222111     01456799999


Q ss_pred             ccCCCCHHHHHHHHHHHHhhh
Q 029920          160 AYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~~  180 (185)
                      |++|.|+++++++|.+.+.++
T Consensus       159 a~~~~gi~~l~~~l~~~~~~~  179 (182)
T 1ky3_A          159 AKNAINVDTAFEEIARSALQQ  179 (182)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999988654

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.97  E-value=4e-30  Score=181.85  Aligned_cols=161  Identities=16%  Similarity=0.192  Sum_probs=96.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCC--CCc-ccccCcc--eEEEEEEEc----CeEEEEEEcCCchhhHHHHHhhhcCC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGE--DTS-VISPTLG--FNIKTVTYQ----KYTLNIWDVGGQRTIRSYWRNYFEQT   84 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~--~~~-~~~~t~~--~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~   84 (185)
                      ...++|+++|++|+|||||+++|.+.  .+. .+.+|.+  +....+.++    ...+.+|||||++.+...+..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            45789999999999999999999988  553 4556665  444455665    46899999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHhccc--cCCCeEEEEeecCCCCC-C--CCHHHHHHhcCcccccCccceEEEeec
Q 029920           85 DGLVWVVDSSDLRRLDDCKMELDNLLKEER--LSGASLLILANKQDING-A--LTPTEIAKVLNLEAMDKTRHWKIVGCS  159 (185)
Q Consensus        85 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (185)
                      |++++|+|++++.+++.+..|+..+.....  ..+.|+++|+||+|+.. .  ...++.......      .+++++++|
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~------~~~~~~~~S  171 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATT------NTLDFFDVS  171 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHH------TTCEEEECC
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHH------cCCEEEEec
Confidence            999999999999999999988888766532  25799999999999865 2  223333332211      457899999


Q ss_pred             ccC-CCCHHHHHHHHHHHHhhh
Q 029920          160 AYT-GEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       160 a~~-~~~i~~l~~~l~~~~~~~  180 (185)
                      |++ |.|++++|++|.+.+.+.
T Consensus       172 a~~~~~gi~~l~~~i~~~~~~~  193 (208)
T 2yc2_C          172 ANPPGKDADAPFLSIATTFYRN  193 (208)
T ss_dssp             C-------CHHHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHHHHH
Confidence            999 999999999999987654

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.97  E-value=1.4e-29  Score=179.03  Aligned_cols=163  Identities=18%  Similarity=0.280  Sum_probs=126.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      ....++|+|+|++|+|||||+++|.+..+. .+.++.+...  ..+..++  ..+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            567899999999999999999999988764 4455655433  3344443  6899999999999888888899999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccc---cCCCeEEEEeecCCCCCCC-CHHHHHHhcCcccccCccceEEEeecccCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEER---LSGASLLILANKQDINGAL-TPTEIAKVLNLEAMDKTRHWKIVGCSAYTG  163 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (185)
                      ++|+|++++.++.....|+..+.....   ..+.|+++|+||+|+.... ..++......     ....++++++||++|
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g  159 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY-----SKNNIPYFETSAKEA  159 (207)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH-----HTTSCCEEECBTTTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH-----hcCCceEEEEeCCCC
Confidence            999999999999988888777765432   2468999999999987433 2222222211     015668999999999


Q ss_pred             CCHHHHHHHHHHHHhhh
Q 029920          164 EGLLEGFDWLVQDIASR  180 (185)
Q Consensus       164 ~~i~~l~~~l~~~~~~~  180 (185)
                      .|+++++++|.+.+.++
T Consensus       160 ~gi~~l~~~l~~~~~~~  176 (207)
T 1vg8_A          160 INVEQAFQTIARNALKQ  176 (207)
T ss_dssp             BSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999987654

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.97  E-value=5.4e-29  Score=173.93  Aligned_cols=162  Identities=18%  Similarity=0.297  Sum_probs=116.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ..+.++|+++|++|+|||||+++|.+..+. .+.++.+.. ...+..++  ..+.+|||||++.+...+..+++.+|+++
T Consensus        18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   97 (190)
T 3con_A           18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   97 (190)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred             ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence            446799999999999999999999987664 334444433 23445554  56999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC-CHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL-TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      +|+|++++.++..+..|+..+.......+.|+++|+||+|+.... ..++.......      .+++++++||++|.|++
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~gi~  171 (190)
T 3con_A           98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKS------YGIPFIETSAKTRQGVE  171 (190)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH------HTCCEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHH------cCCeEEEEeCCCCCCHH
Confidence            999999999999888887777665444579999999999986532 33333322211      34579999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 029920          168 EGFDWLVQDIASR  180 (185)
Q Consensus       168 ~l~~~l~~~~~~~  180 (185)
                      +++++|.+.+.+.
T Consensus       172 ~l~~~l~~~~~~~  184 (190)
T 3con_A          172 DAFYTLVREIRQY  184 (190)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988654

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.6e-29  Score=181.05  Aligned_cols=162  Identities=20%  Similarity=0.356  Sum_probs=123.4

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      ....++|+|+|++|+|||||+++|.+..+. ...++.+  +....+..++  +.+.+|||||++.+...+..+++.+|++
T Consensus        10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v   89 (223)
T 3cpj_B           10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA   89 (223)
T ss_dssp             CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred             CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence            466799999999999999999999988775 3445554  4445566666  6899999999999998899999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      ++|||++++.+++.+..|+..+... ...+.|+++|+||+|+...  ....+......      ..+++++++||++|.|
T Consensus        90 ilV~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~g  162 (223)
T 3cpj_B           90 LIVYDISKSSSYENCNHWLSELREN-ADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQ------ENQLLFTETSALNSEN  162 (223)
T ss_dssp             EEEEC-CCHHHHHHHHHHHHHHHHH-CC--CEEEEEECCGGGGGGCCSCHHHHHHHHH------HTTCEEEECCCC-CCC
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHH------HcCCEEEEEeCCCCCC
Confidence            9999999999999988888777554 2357899999999998643  22233322211      1457899999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 029920          166 LLEGFDWLVQDIASRI  181 (185)
Q Consensus       166 i~~l~~~l~~~~~~~~  181 (185)
                      ++++|++|.+.+.++.
T Consensus       163 i~~l~~~l~~~i~~~~  178 (223)
T 3cpj_B          163 VDKAFEELINTIYQKV  178 (223)
T ss_dssp             HHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999887654

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.97  E-value=1.5e-29  Score=176.65  Aligned_cols=163  Identities=18%  Similarity=0.182  Sum_probs=120.4

Q ss_pred             hhccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCC
Q 029920           10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTD   85 (185)
Q Consensus        10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d   85 (185)
                      .......+||+++|++|+|||||+++|.+..+. .+.+|.+... ..+..++  +.+.+|||||++.+... ..+++.+|
T Consensus        15 ~~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~   93 (187)
T 3c5c_A           15 YFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH   93 (187)
T ss_dssp             -----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred             HhCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence            344667899999999999999999999988764 4566666443 2334443  68899999999887764 56889999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhccc--cCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecc-
Q 029920           86 GLVWVVDSSDLRRLDDCKMELDNLLKEER--LSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSA-  160 (185)
Q Consensus        86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-  160 (185)
                      ++++|||++++++++.+..|+..+.....  ..+.|+++|+||+|+.+.  ...++......      ..+++++++|| 
T Consensus        94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~e~Sa~  167 (187)
T 3c5c_A           94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAG------RFGCLFFEVSAC  167 (187)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHH------HHTCEEEECCSS
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHH------HcCCcEEEEeec
Confidence            99999999999999999988888766532  257999999999998543  22233322221      14568999999 


Q ss_pred             cCCCCHHHHHHHHHHHHhh
Q 029920          161 YTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~~  179 (185)
                      ++|.|++++|++|.+.+.+
T Consensus       168 ~~g~gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          168 LDFEHVQHVFHEAVREARR  186 (187)
T ss_dssp             SCSHHHHHHHHHHHHHHHC
T ss_pred             CccccHHHHHHHHHHHHhh
Confidence            8999999999999998754

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2.1e-29  Score=172.88  Aligned_cols=160  Identities=19%  Similarity=0.260  Sum_probs=122.7

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      +.++|+++|++|+|||||+++|.+..+. .+.++.+.... .+..++  ..+.+|||||++.+...+..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            5689999999999999999999988764 44555554333 333333  5799999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhcc-ccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEE-RLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      +|++++.+++....++..+.... ..++.|+++|+||+|+.+...  ..+... +.     ...+++++++||++|.|++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~-~~-----~~~~~~~~~~Sa~~~~gi~  155 (172)
T 2erx_A           82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEA-LA-----RTWKCAFMETSAKLNHNVK  155 (172)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHH-HH-----HHHTCEEEECBTTTTBSHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHH-HH-----HHhCCeEEEecCCCCcCHH
Confidence            99999999988888777665542 224789999999999864322  222221 11     1145689999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 029920          168 EGFDWLVQDIASR  180 (185)
Q Consensus       168 ~l~~~l~~~~~~~  180 (185)
                      +++++|.+.+.++
T Consensus       156 ~l~~~l~~~~~~~  168 (172)
T 2erx_A          156 ELFQELLNLEKRR  168 (172)
T ss_dssp             HHHHHHHHTCCSS
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999877654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=4.3e-29  Score=175.04  Aligned_cols=158  Identities=20%  Similarity=0.231  Sum_probs=121.5

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ....++|+++|++|+|||||+++|.+..+. .+.+|.+... ..+..++  ..+.+|||||++.+...+..+++.+|+++
T Consensus        15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   94 (194)
T 2atx_A           15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL   94 (194)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence            346799999999999999999999987764 4455555332 3445554  78999999999999989999999999999


Q ss_pred             EEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEeecCCCCCCC--------------CHHHHHHhcCcccccCccce
Q 029920           89 WVVDSSDLRRLDDCK-MELDNLLKEERLSGASLLILANKQDINGAL--------------TPTEIAKVLNLEAMDKTRHW  153 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~~~  153 (185)
                      +|+|+++++++.... .|+..+...  .++.|+++|+||+|+.+..              ..++.....      ...+.
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~~  166 (194)
T 2atx_A           95 ICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLA------KEIGA  166 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHH------HHHTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHH------HHcCC
Confidence            999999999999887 565555443  2479999999999997532              111111111      11233


Q ss_pred             -EEEeecccCCCCHHHHHHHHHHHHh
Q 029920          154 -KIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       154 -~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                       +++++||++|.|++++|++|.+.+.
T Consensus       167 ~~~~~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          167 CCYVECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             SCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence             7999999999999999999998764

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.96  E-value=4.1e-30  Score=183.88  Aligned_cols=162  Identities=17%  Similarity=0.310  Sum_probs=128.7

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCC-CcccccCcceEEEEEE--E--cCeEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGED-TSVISPTLGFNIKTVT--Y--QKYTLNIWDVGGQRTIRSYWRNYFEQTDG   86 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~-~~~~~~t~~~~~~~~~--~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~   86 (185)
                      .....+||+++|++|||||||++++..+. ...+.++.+.+.....  .  ....+.+|||||++.+...+..+++.+|+
T Consensus        11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   90 (221)
T 3gj0_A           11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC   90 (221)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence            45677999999999999999999955444 4556777775555433  3  34789999999999998888999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920           87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL  166 (185)
Q Consensus        87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (185)
                      +++|||++++.++..+..|+..+....  .+.|+++|+||+|+.+.....+..      .+....+++++++||++|.|+
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~------~~~~~~~~~~~~~Sa~~~~gi  162 (221)
T 3gj0_A           91 AIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSI------VFHRKKNLQYYDISAKSNYNF  162 (221)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGGC------CHHHHHTCEEEECBGGGTBTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHHH------HHHHHcCCEEEEEeCCCCCCH
Confidence            999999999999999988888877653  479999999999997643322111      112225678999999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q 029920          167 LEGFDWLVQDIASRI  181 (185)
Q Consensus       167 ~~l~~~l~~~~~~~~  181 (185)
                      +++|++|.+.+.+..
T Consensus       163 ~~l~~~l~~~l~~~~  177 (221)
T 3gj0_A          163 EKPFLWLARKLIGDP  177 (221)
T ss_dssp             THHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHhCc
Confidence            999999999886653

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.96  E-value=7e-29  Score=174.85  Aligned_cols=163  Identities=16%  Similarity=0.191  Sum_probs=116.8

Q ss_pred             hhccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCC
Q 029920           10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTD   85 (185)
Q Consensus        10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d   85 (185)
                      .....+.++|+++|++|+|||||+++|.+..+. .+.+|.+... ..+..++  +.+.+|||||++.+...+..++..+|
T Consensus        14 ~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (201)
T 2q3h_A           14 GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD   93 (201)
T ss_dssp             ------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred             CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence            344677899999999999999999999988764 4455655333 3345555  57789999999999888888999999


Q ss_pred             EEEEEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEeecCCCCCCC--------------CHHHHHHhcCcccccCc
Q 029920           86 GLVWVVDSSDLRRLDDCK-MELDNLLKEERLSGASLLILANKQDINGAL--------------TPTEIAKVLNLEAMDKT  150 (185)
Q Consensus        86 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~  150 (185)
                      ++++|||++++.++..+. .|+..+...  .++.|+++|+||+|+....              ..++.....      ..
T Consensus        94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~  165 (201)
T 2q3h_A           94 IFLLCFSVVSPSSFQNVSEKWVPEIRCH--CPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLA------EE  165 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHH--CSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH------HH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHH------Hh
Confidence            999999999999999887 565555443  2479999999999986421              111111111      11


Q ss_pred             cc-eEEEeecccCCCCHHHHHHHHHHHHhhh
Q 029920          151 RH-WKIVGCSAYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       151 ~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (185)
                      .+ .+++++||++|.|++++|++|.+.+.+.
T Consensus       166 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  196 (201)
T 2q3h_A          166 IKAASYIECSALTQKNLKEVFDAAIVAGIQY  196 (201)
T ss_dssp             HTCSEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             cCCcEEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence            23 3899999999999999999999987653

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.96  E-value=9.7e-29  Score=174.33  Aligned_cols=166  Identities=18%  Similarity=0.255  Sum_probs=120.6

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ....+||+++|++|+|||||++++.+..+. .+.++.+... ..+..++  ..+.+|||||++.+...+..+++.+|+++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            356789999999999999999999987764 3445554322 3345554  58999999999999988899999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCc--------ccccCccce-EEEeec
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNL--------EAMDKTRHW-KIVGCS  159 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~--------~~~~~~~~~-~~~~~S  159 (185)
                      +|+|+++++++......|...+.. ..++.|+++|+||+|+.......+.......        ..+....+. +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS  180 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHH-HSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence            999999999999885434444333 2247999999999998764221111111000        000111233 799999


Q ss_pred             ccCCCCHHHHHHHHHHHHhh
Q 029920          160 AYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~  179 (185)
                      |++|.|+++++++|.+.+.+
T Consensus       181 A~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          181 AKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999987653

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.96  E-value=3.1e-29  Score=177.31  Aligned_cols=167  Identities=18%  Similarity=0.249  Sum_probs=117.4

Q ss_pred             HhhccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCC
Q 029920            9 KIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQT   84 (185)
Q Consensus         9 ~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~   84 (185)
                      +.....+.+||+++|++|+|||||++++.++.+. .+.++.+... ..+..++  +.+.+|||||++.+...+..+++.+
T Consensus        23 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~  102 (204)
T 4gzl_A           23 NLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT  102 (204)
T ss_dssp             -------CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred             hHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccC
Confidence            3444677899999999999999999999977764 4445554322 2334444  5677999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCc---------ccccCccceE
Q 029920           85 DGLVWVVDSSDLRRLDDCK-MELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNL---------EAMDKTRHWK  154 (185)
Q Consensus        85 d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~---------~~~~~~~~~~  154 (185)
                      |++++|||++++.+++... .|+..+....  .+.|+++|+||+|+.+.....+.......         .........+
T Consensus       103 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  180 (204)
T 4gzl_A          103 DVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK  180 (204)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcE
Confidence            9999999999999999987 4544444332  57999999999998654322221111100         0111112357


Q ss_pred             EEeecccCCCCHHHHHHHHHHHH
Q 029920          155 IVGCSAYTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       155 ~~~~Sa~~~~~i~~l~~~l~~~~  177 (185)
                      ++++||++|.|++++|+++.+.+
T Consensus       181 ~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          181 YLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHTT
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999998754

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.96  E-value=6.5e-29  Score=172.85  Aligned_cols=160  Identities=17%  Similarity=0.241  Sum_probs=119.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ....++|+++|++|+|||||+++|.+..+. .+.+|.+.... .+..+  ...+.+|||||++.+...+..+++.+|+++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   83 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   83 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence            456799999999999999999999988774 34566654332 23333  368999999999999888889999999999


Q ss_pred             EEEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEeecCCCCCC--------------CCHHHHHHhcCcccccCccce
Q 029920           89 WVVDSSDLRRLDDC-KMELDNLLKEERLSGASLLILANKQDINGA--------------LTPTEIAKVLNLEAMDKTRHW  153 (185)
Q Consensus        89 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~~  153 (185)
                      +|+|++++.+++.+ ..|+..+...  .++.|+++|+||+|+.+.              ...++.....     ......
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~  156 (184)
T 1m7b_A           84 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA-----KQIGAA  156 (184)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH-----HHHTCS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHH-----HHcCCc
Confidence            99999999999988 4555554332  257999999999998642              1112211111     111236


Q ss_pred             EEEeeccc-CCCCHHHHHHHHHHHHhh
Q 029920          154 KIVGCSAY-TGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       154 ~~~~~Sa~-~~~~i~~l~~~l~~~~~~  179 (185)
                      +++++||+ ++.|++++|+.+.+.+.+
T Consensus       157 ~~~e~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          157 TYIECSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             EEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             EEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence            89999999 689999999999988754

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=1.2e-29  Score=178.31  Aligned_cols=166  Identities=22%  Similarity=0.256  Sum_probs=114.5

Q ss_pred             HhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEE--E---EcCeEEEEEEcCCchhhHHHH---Hhh
Q 029920            9 KIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTV--T---YQKYTLNIWDVGGQRTIRSYW---RNY   80 (185)
Q Consensus         9 ~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~--~---~~~~~~~~~D~~g~~~~~~~~---~~~   80 (185)
                      ...+.++.+||+++|++|+|||||++++.+................+  .   .....+.+|||||++.+....   ..+
T Consensus        13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   92 (196)
T 3llu_A           13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI   92 (196)
T ss_dssp             -------CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred             CCcccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence            34557778999999999999999999998865544332222222211  2   344899999999999887666   788


Q ss_pred             hcCCCEEEEEEeCCCc--ccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC----HHHHHHhcCccccc---Ccc
Q 029920           81 FEQTDGLVWVVDSSDL--RRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT----PTEIAKVLNLEAMD---KTR  151 (185)
Q Consensus        81 ~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~----~~~~~~~~~~~~~~---~~~  151 (185)
                      ++.+|++++|||++++  +++..+..|+.....  ..++.|+++|+||+|+.....    .+.+..........   ...
T Consensus        93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  170 (196)
T 3llu_A           93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYK--VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL  170 (196)
T ss_dssp             HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHH--HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred             cccCCEEEEEEECCCchHHHHHHHHHHHHHHHh--cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence            9999999999999997  566666666666533  234899999999999865321    11222211111111   126


Q ss_pred             ceEEEeecccCCCCHHHHHHHHHHHH
Q 029920          152 HWKIVGCSAYTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (185)
                      +++++++||++ .|++++|+.+++.+
T Consensus       171 ~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          171 HLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             CEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             CcceEEEEech-hhHHHHHHHHHHHh
Confidence            78999999999 99999999998865

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=1.4e-28  Score=174.25  Aligned_cols=166  Identities=19%  Similarity=0.286  Sum_probs=119.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ....++|+++|++|+|||||+++|.+..+. .+.++.+... ..+..++  ..+.+|||||++.+...+..+++.+|+++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            456799999999999999999999988775 3345555333 3345554  68999999999999888889999999999


Q ss_pred             EEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcc--------cccCccc-eEEEee
Q 029920           89 WVVDSSDLRRLDDCK-MELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLE--------AMDKTRH-WKIVGC  158 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~--------~~~~~~~-~~~~~~  158 (185)
                      +|+|++++.++.... .|+..+..  ..++.|+++|+||+|+.......+....+...        .+....+ .+++++
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  179 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKH--FCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC  179 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHH--HSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHH--hCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence            999999999999884 44444433  23579999999999986542222111111100        0011122 389999


Q ss_pred             cccCCCCHHHHHHHHHHHHhhh
Q 029920          159 SAYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~~~~  180 (185)
                      ||++|.|+++++++|.+.+.+.
T Consensus       180 SA~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          180 SAKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHSC
T ss_pred             eCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999987654

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.96  E-value=1.8e-28  Score=174.66  Aligned_cols=166  Identities=14%  Similarity=0.208  Sum_probs=104.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ..+.++|+++|++|+|||||+++|.+..+. .+.++.... ...+..++  ..+.+|||||++.+...+..+++.+|+++
T Consensus        31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            346799999999999999999999988764 344555433 22344444  57999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcC--------cccccCccce-EEEee
Q 029920           89 WVVDSSDLRRLDDCK-MELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLN--------LEAMDKTRHW-KIVGC  158 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~~~  158 (185)
                      +|+|++++.+++.+. .|+..+...  .++.|+++|+||+|+.......+......        ...+....+. +++++
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  188 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC  188 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence            999999999999887 455554432  25799999999999866422211110000        0011111333 89999


Q ss_pred             cccCCCCHHHHHHHHHHHHhhh
Q 029920          159 SAYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~~~~  180 (185)
                      ||++|.|++++|++|.+.+.+.
T Consensus       189 SA~~g~gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          189 SARLHDNVHAVFQEAAEVALSS  210 (214)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHC
T ss_pred             cCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999988654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.96  E-value=9.7e-29  Score=170.70  Aligned_cols=163  Identities=18%  Similarity=0.164  Sum_probs=119.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCccc-cc--CcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVI-SP--TLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~-~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      ..+.++|+++|++|+|||||+++|.+..+... .+  +.......+..++..+.+|||||++.+...+..++..+|++++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   84 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVIL   84 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence            46789999999999999999999998877532 22  3334455677788899999999999988888888899999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCc-ccccCcc--ceEEEeecccCCCCH
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNL-EAMDKTR--HWKIVGCSAYTGEGL  166 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~Sa~~~~~i  166 (185)
                      |+|++++..... ...+...    ...+.|+++|+||+|+.+. ..++....+.. .......  ..+++++||++|.|+
T Consensus        85 v~d~~~~~~~~~-~~~l~~~----~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  158 (178)
T 2lkc_A           85 VVAADDGVMPQT-VEAINHA----KAANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGL  158 (178)
T ss_dssp             EEETTCCCCHHH-HHHHHHH----GGGSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHH
T ss_pred             EEECCCCCcHHH-HHHHHHH----HhCCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCH
Confidence            999988433222 2222322    2247899999999999764 33344333322 1122112  378999999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q 029920          167 LEGFDWLVQDIASRI  181 (185)
Q Consensus       167 ~~l~~~l~~~~~~~~  181 (185)
                      ++++++|.+.+....
T Consensus       159 ~~l~~~l~~~~~~~~  173 (178)
T 2lkc_A          159 DHLLEMILLVSEMEE  173 (178)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhhhhc
Confidence            999999999876543

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.96  E-value=6e-29  Score=176.64  Aligned_cols=160  Identities=17%  Similarity=0.210  Sum_probs=121.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ....++|+++|++|+|||||+++|.+..+. .+.+|.+... ..+..++  +.+.+|||||++.+...+..+++.+|+++
T Consensus         6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            457799999999999999999999987764 4456665333 2344444  68999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEeecCCCCCCC----------CHHHHHHhcCcccccCccc-eEEE
Q 029920           89 WVVDSSDLRRLDDCK-MELDNLLKEERLSGASLLILANKQDINGAL----------TPTEIAKVLNLEAMDKTRH-WKIV  156 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~~-~~~~  156 (185)
                      +|||++++++++... .|+..+...  .++.|+++|+||+|+.+..          ...+.....     .. .+ .+++
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~-----~~-~~~~~~~  157 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELR-----KQ-IGAAAYI  157 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHH-----HH-HTCSEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHH-----HH-cCCceEE
Confidence            999999999999887 555555443  2479999999999986532          122221111     11 23 4899


Q ss_pred             eecccCCCCHHHHHHHHHHHHhhh
Q 029920          157 GCSAYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       157 ~~Sa~~~~~i~~l~~~l~~~~~~~  180 (185)
                      ++||++|.|++++|++|.+.+.+.
T Consensus       158 ~~Sa~~g~gi~~l~~~l~~~~~~~  181 (212)
T 2j0v_A          158 ECSSKTQQNVKAVFDTAIKVVLQP  181 (212)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred             EccCCCCCCHHHHHHHHHHHHhhh
Confidence            999999999999999999987653

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.96  E-value=2.1e-28  Score=170.03  Aligned_cols=165  Identities=21%  Similarity=0.263  Sum_probs=120.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      .+.++|+++|++|+|||||+++|.++.+. .+.++.+... ..+..++  +.+.+|||||++.+...+..+++.+|++++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            46799999999999999999999977764 4445554332 2344444  577799999999998888889999999999


Q ss_pred             EEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCc--------ccccCccc-eEEEeec
Q 029920           90 VVDSSDLRRLDDCK-MELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNL--------EAMDKTRH-WKIVGCS  159 (185)
Q Consensus        90 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~--------~~~~~~~~-~~~~~~S  159 (185)
                      |+|++++.++.... .|+..+...  .++.|+++|+||+|+.+.....+.......        ..+....+ .+++++|
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEECCChhhHHHHHHHHHHHHHHh--CCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence            99999999999887 455555443  237999999999998653211111110000        00111123 3899999


Q ss_pred             ccCCCCHHHHHHHHHHHHhhh
Q 029920          160 AYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~~  180 (185)
                      |++|.|++++++++.+.+.+.
T Consensus       161 a~~g~gi~~l~~~l~~~~~~~  181 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIRAVLCP  181 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHSCC
T ss_pred             CCCccCHHHHHHHHHHHHhcc
Confidence            999999999999999988654

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.96  E-value=2.2e-29  Score=174.60  Aligned_cols=158  Identities=16%  Similarity=0.230  Sum_probs=109.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-E--EEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-T--VTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ....++|+++|++|+|||||++++.+..+. .+.+|.+.... .  +......+.+|||||++.+...+..+++.+|+++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            456799999999999999999999987764 33444432211 1  1223466789999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEeecCCCCCCCC------------HHHHHHhcCcccccCccc-eE
Q 029920           89 WVVDSSDLRRLDDCK-MELDNLLKEERLSGASLLILANKQDINGALT------------PTEIAKVLNLEAMDKTRH-WK  154 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~~-~~  154 (185)
                      +|+|++++.+++... .|+..+...  .++.|+++|+||+|+.+...            ..+...      +....+ .+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~~~~  156 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHY--APGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEE------LKKLIGAPA  156 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHH------HHHHHTCSE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHH------HHHHcCCCE
Confidence            999999999999887 455554433  24799999999999865321            111111      111133 38


Q ss_pred             EEeecccCCCCHHHHHHHHHHHHh
Q 029920          155 IVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       155 ~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      ++++||++|.|++++|++|.+.+.
T Consensus       157 ~~~~Sa~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          157 YIECSSKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999998764

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.96  E-value=2.3e-28  Score=173.07  Aligned_cols=160  Identities=17%  Similarity=0.242  Sum_probs=119.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ....+||+++|++|+|||||+++|.+..+. .+.+|.+.... .+..+  ...+.+|||||++.+...+..+++.+|+++
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  104 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL  104 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence            456799999999999999999999988775 34566554332 23333  378999999999999888889999999999


Q ss_pred             EEEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEeecCCCCCC--------------CCHHHHHHhcCcccccCccce
Q 029920           89 WVVDSSDLRRLDDC-KMELDNLLKEERLSGASLLILANKQDINGA--------------LTPTEIAKVLNLEAMDKTRHW  153 (185)
Q Consensus        89 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~~  153 (185)
                      +|||++++.+++.+ ..|+..+...  .++.|+++|+||+|+.+.              ...++....     .......
T Consensus       105 lv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~  177 (205)
T 1gwn_A          105 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM-----AKQIGAA  177 (205)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH-----HHHHTCS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHH-----HHHcCCC
Confidence            99999999999988 4555555433  247999999999998642              111111111     1111235


Q ss_pred             EEEeeccc-CCCCHHHHHHHHHHHHhh
Q 029920          154 KIVGCSAY-TGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       154 ~~~~~Sa~-~~~~i~~l~~~l~~~~~~  179 (185)
                      +++++||+ ++.|++++|+.+.+.+.+
T Consensus       178 ~~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          178 TYIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             EEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence            89999999 689999999999988754

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.96  E-value=2.5e-30  Score=182.16  Aligned_cols=162  Identities=20%  Similarity=0.375  Sum_probs=118.0

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ...+||+++|++|+|||||+++|.+..+.. ..++.+  .....+..++  +.+.+|||||++.+...+..+++.+|+++
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  110 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII  110 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence            457999999999999999999999887753 334333  5555666666  68999999999999888889999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      +|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+......    .....+....+++++++||++|.|+++
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~----~~~~~~~~~~~~~~~~vSA~~g~gv~~  185 (199)
T 3l0i_B          111 VVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDY----TTAKEFADSLGIPFLETSAKNATNVEQ  185 (199)
T ss_dssp             ECC-CCCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCS----CC-CHHHHTTTCCBCCCCC---HHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECccCCccccCCH----HHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence            999999999999998887777554 335799999999999864321110    000111112456799999999999999


Q ss_pred             HHHHHHHHHhhh
Q 029920          169 GFDWLVQDIASR  180 (185)
Q Consensus       169 l~~~l~~~~~~~  180 (185)
                      +|++|.+.+.++
T Consensus       186 l~~~l~~~l~~~  197 (199)
T 3l0i_B          186 SFMTMAAEIKKR  197 (199)
T ss_dssp             HHHHHTTTTTTT
T ss_pred             HHHHHHHHHHHh
Confidence            999999887654

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=7.6e-29  Score=172.59  Aligned_cols=161  Identities=20%  Similarity=0.285  Sum_probs=113.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCC--CC-cccccCcceEEEEEEE-------cCeEEEEEEcCCchhhHHHHHhhhcCCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGE--DT-SVISPTLGFNIKTVTY-------QKYTLNIWDVGGQRTIRSYWRNYFEQTD   85 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~--~~-~~~~~t~~~~~~~~~~-------~~~~~~~~D~~g~~~~~~~~~~~~~~~d   85 (185)
                      .+||+++|++|||||||+++|++.  .+ ..+.+|.+........       ....+.+|||+|++.+...+..+++.+|
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            589999999999999999999985  33 2355666655443321       3578999999999998888888899999


Q ss_pred             EEEEEEeCCCc-ccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccce----EEEeecc
Q 029920           86 GLVWVVDSSDL-RRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHW----KIVGCSA  160 (185)
Q Consensus        86 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Sa  160 (185)
                      ++++|+|++++ .++..+..|+..+....  ++.|+++|+||+|+.+.............. +....++    +++++||
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Sa  158 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKE-LLNKRGFPAIRDYHFVNA  158 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHH-TTTCTTSCEEEEEEECCT
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHH-HHHhcCCcchhheEEEec
Confidence            99999999987 57888888887775532  479999999999986532221111111111 1111233    4899999


Q ss_pred             cCCC-CHHHHHHHHHHHHhh
Q 029920          161 YTGE-GLLEGFDWLVQDIAS  179 (185)
Q Consensus       161 ~~~~-~i~~l~~~l~~~~~~  179 (185)
                      +++. +++++++.+.+.+.+
T Consensus       159 ~~~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          159 TEESDALAKLRKTIINESLN  178 (184)
T ss_dssp             TSCCHHHHHHHHHHHHHHHC
T ss_pred             ccCchhHHHHHHHHHHHHhc
Confidence            9997 999999999888765

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.96  E-value=1.8e-27  Score=166.74  Aligned_cols=160  Identities=16%  Similarity=0.173  Sum_probs=114.6

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCC--cccccCcc--eEEEEEEEcC--eEEEEEEcCCchh-hHHHHHhhhcCCCE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDT--SVISPTLG--FNIKTVTYQK--YTLNIWDVGGQRT-IRSYWRNYFEQTDG   86 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~--~~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~~~~d~   86 (185)
                      ...+||+++|++|+|||||+++|.+...  ....++.+  +....+.+++  +.+.+|||+|.+. ...+...+++.+|+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            5679999999999999999999986432  22222222  3344556665  4668899999766 34455667788999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920           87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE  164 (185)
Q Consensus        87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (185)
                      +++|||++++++|+....|+..+.......+.|+++|+||+|+....  ...+.. .+     +...+++++++||++|.
T Consensus        84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~-~~-----a~~~~~~~~e~SA~~g~  157 (192)
T 2cjw_A           84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGR-AX-----AVVFDXKFIETSAAVQH  157 (192)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHH-HH-----HHHTTCEEEECBTTTTB
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHH-HH-----HHHhCCceEEeccccCC
Confidence            99999999999999988887766554334579999999999985421  221111 11     11145689999999999


Q ss_pred             CHHHHHHHHHHHHhh
Q 029920          165 GLLEGFDWLVQDIAS  179 (185)
Q Consensus       165 ~i~~l~~~l~~~~~~  179 (185)
                      |++++|+++.+.+..
T Consensus       158 ~v~~lf~~l~~~~~~  172 (192)
T 2cjw_A          158 NVKELFEGIVRQVRL  172 (192)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999998754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.95  E-value=5.6e-28  Score=169.34  Aligned_cols=159  Identities=19%  Similarity=0.204  Sum_probs=109.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCC-cccccCcceEE--EEEEEcCeEEEEEEcCC----------chhhHHHHHh
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDT-SVISPTLGFNI--KTVTYQKYTLNIWDVGG----------QRTIRSYWRN   79 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~-~~~~~t~~~~~--~~~~~~~~~~~~~D~~g----------~~~~~~~~~~   79 (185)
                      ..+.++|+|+|++|+|||||+++|.+..+ ..+.++.+.+.  .....+ ..+.+|||||          ++.+...+..
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   98 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSEREAWGRMIET   98 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-CcEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence            45689999999999999999999998874 44445444322  222333 3799999999          6777777788


Q ss_pred             hhcCC---CEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEE
Q 029920           80 YFEQT---DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIV  156 (185)
Q Consensus        80 ~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (185)
                      +++.+   |++++|+|++++.++....  +...+..   .+.|+++|+||+|+.+..........+.. .+......+++
T Consensus        99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~  172 (195)
T 1svi_A           99 YITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQ-TLNIDPEDELI  172 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHH-HHTCCTTSEEE
T ss_pred             HHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHH-HHcccCCCceE
Confidence            87776   9999999999877766532  1222222   47899999999999765444332222211 11122567899


Q ss_pred             eecccCCCCHHHHHHHHHHHHh
Q 029920          157 GCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       157 ~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      ++||++|.|+++++++|.+.+.
T Consensus       173 ~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          173 LFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHT
T ss_pred             EEEccCCCCHHHHHHHHHHHhc
Confidence            9999999999999999998764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.95  E-value=3.1e-27  Score=169.73  Aligned_cols=164  Identities=15%  Similarity=0.107  Sum_probs=111.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCccc---ccCcceEEEEEEEcCeEEEEEEcCCc------hhh---HHHHHhhh
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVI---SPTLGFNIKTVTYQKYTLNIWDVGGQ------RTI---RSYWRNYF   81 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~D~~g~------~~~---~~~~~~~~   81 (185)
                      .+.++|+|+|++|+|||||+++|++..+...   ..+.......+...+..+.+|||||+      +..   ......+.
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  106 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA  106 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence            4679999999999999999999999876411   12334555556667889999999998      331   12234457


Q ss_pred             cCCCEEEEEEeCCCcccHH--HHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHH-HHhcCcccccCccc--eEEE
Q 029920           82 EQTDGLVWVVDSSDLRRLD--DCKMELDNLLKEERLSGASLLILANKQDINGALTPTEI-AKVLNLEAMDKTRH--WKIV  156 (185)
Q Consensus        82 ~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~  156 (185)
                      ..+|++++|+|++++.++.  ....++..+...  ..+.|+++|+||+|+.+....... .....  .+....+  ++++
T Consensus       107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  182 (228)
T 2qu8_A          107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIK--QILDNVKNPIKFS  182 (228)
T ss_dssp             TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHH--HHHHHCCSCEEEE
T ss_pred             ccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHH--HHHHhcCCCceEE
Confidence            8889999999999987764  223444444332  237999999999998654332111 11111  1111123  7899


Q ss_pred             eecccCCCCHHHHHHHHHHHHhhhc
Q 029920          157 GCSAYTGEGLLEGFDWLVQDIASRI  181 (185)
Q Consensus       157 ~~Sa~~~~~i~~l~~~l~~~~~~~~  181 (185)
                      ++||++|.|++++|++|.+.+.+..
T Consensus       183 ~~SA~~g~gi~~l~~~l~~~i~~~~  207 (228)
T 2qu8_A          183 SFSTLTGVGVEQAKITACELLKNDQ  207 (228)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999886543

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.95  E-value=1.8e-28  Score=182.52  Aligned_cols=161  Identities=17%  Similarity=0.223  Sum_probs=118.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcc----cccCcceEEEEEEEcCeEEEEEEcCCchhhHH---HHHhhhcCCCEEEEE
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSV----ISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRS---YWRNYFEQTDGLVWV   90 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~d~~i~v   90 (185)
                      ||+++|+.|+|||||++++.++..+.    ..+|.++....+. ..+.+++|||+|++++..   .+..|+++++++++|
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV   79 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV   79 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence            68999999999999999988776543    4677776665542 348999999999999864   468899999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhcc--ccCCCeEEEEeecCCCCCCCCH----HHHHHhcCcccccC---ccceEEEeeccc
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEE--RLSGASLLILANKQDINGALTP----TEIAKVLNLEAMDK---TRHWKIVGCSAY  161 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~~ivv~nK~D~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~Sa~  161 (185)
                      ||++++  +.+...+|..++...  ..++.|+++++||+|+.+....    +++....+.+.+..   ..+++|++|||+
T Consensus        80 ~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk  157 (331)
T 3r7w_B           80 IDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF  157 (331)
T ss_dssp             CCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred             EECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence            999987  444455554444321  2458999999999999764321    23333332222222   157899999999


Q ss_pred             CCCCHHHHHHHHHHHHhhhcc
Q 029920          162 TGEGLLEGFDWLVQDIASRIY  182 (185)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~~~~  182 (185)
                      + .|+++.|..+++.+.++.+
T Consensus       158 d-~nV~eAFs~iv~~li~~~~  177 (331)
T 3r7w_B          158 D-HSIYEAFSRIVQKLIPELS  177 (331)
T ss_dssp             S-SHHHHHHHHHHTTSSTTHH
T ss_pred             C-CcHHHHHHHHHHHHHhhHH
Confidence            8 5999999999988766543

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.95  E-value=2.4e-27  Score=163.43  Aligned_cols=151  Identities=21%  Similarity=0.333  Sum_probs=110.2

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCcccc----cCcceEEEEEEEcCeEEEEEEcCCchhhH----H----HHHhhhc
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSVIS----PTLGFNIKTVTYQKYTLNIWDVGGQRTIR----S----YWRNYFE   82 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~g~~~~~----~----~~~~~~~   82 (185)
                      +..+|+++|++|+|||||+++|.+.......    .+.......+.+++..+.+|||||++...    .    ....+++
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   82 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE   82 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence            4589999999999999999999987653222    23345556677888899999999986421    1    1224578


Q ss_pred             CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccC
Q 029920           83 QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYT  162 (185)
Q Consensus        83 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (185)
                      .+|++++|+|++++.++.. ..|+..+... ...++|+++|+||+|+.....           ........+++++||++
T Consensus        83 ~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~-----------~~~~~~~~~~~~~SA~~  149 (172)
T 2gj8_A           83 QADRVLFMVDGTTTDAVDP-AEIWPEFIAR-LPAKLPITVVRNKADITGETL-----------GMSEVNGHALIRLSART  149 (172)
T ss_dssp             TCSEEEEEEETTTCCCCSH-HHHCHHHHHH-SCTTCCEEEEEECHHHHCCCC-----------EEEEETTEEEEECCTTT
T ss_pred             hCCEEEEEEECCCCCCHHH-HHHHHHHHHh-cccCCCEEEEEECccCCcchh-----------hhhhccCCceEEEeCCC
Confidence            9999999999999877653 3455544433 234689999999999843211           11112467899999999


Q ss_pred             CCCHHHHHHHHHHHHh
Q 029920          163 GEGLLEGFDWLVQDIA  178 (185)
Q Consensus       163 ~~~i~~l~~~l~~~~~  178 (185)
                      |.|++++|++|.+.+.
T Consensus       150 g~gv~~l~~~l~~~~~  165 (172)
T 2gj8_A          150 GEGVDVLRNHLKQSMG  165 (172)
T ss_dssp             CTTHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHhh
Confidence            9999999999988764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.95  E-value=1.6e-27  Score=166.73  Aligned_cols=161  Identities=17%  Similarity=0.195  Sum_probs=113.2

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEE-EEEcCeEEEEEEcCC----------chhhHHHHHhhh
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT-VTYQKYTLNIWDVGG----------QRTIRSYWRNYF   81 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~D~~g----------~~~~~~~~~~~~   81 (185)
                      ....++|+++|++|+|||||+++|.+.......++.+.+... ....+..+.+|||||          ++.+...+..++
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   99 (195)
T 3pqc_A           20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYF   99 (195)
T ss_dssp             CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHH
Confidence            456789999999999999999999998876666665533322 122345788999999          666677777777


Q ss_pred             cCC---CEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEee
Q 029920           82 EQT---DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGC  158 (185)
Q Consensus        82 ~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (185)
                      +.+   |++++|+|+++..+....  .+...+..   .+.|+++|+||+|+.+........+.... .+.....++++++
T Consensus       100 ~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  173 (195)
T 3pqc_A          100 KNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKS---LNIPFTIVLTKMDKVKMSERAKKLEEHRK-VFSKYGEYTIIPT  173 (195)
T ss_dssp             HHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHH-HHHSSCCSCEEEC
T ss_pred             hcCcCceEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEEChhcCChHHHHHHHHHHHH-HHhhcCCCceEEE
Confidence            665   999999999875443322  11222222   26999999999999765444333332221 1222245689999


Q ss_pred             cccCCCCHHHHHHHHHHHHhh
Q 029920          159 SAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                      ||++|.|+++++++|.+.+.+
T Consensus       174 Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          174 SSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             CTTTCTTHHHHHHHHHHHHC-
T ss_pred             ecCCCCCHHHHHHHHHHHhhc
Confidence            999999999999999998765

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.95  E-value=1.7e-27  Score=162.98  Aligned_cols=148  Identities=26%  Similarity=0.299  Sum_probs=106.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-cccc--CcceEEEEEEEcCeEEEEEEcCCchhhH------HHHHhhhc--C
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISP--TLGFNIKTVTYQKYTLNIWDVGGQRTIR------SYWRNYFE--Q   83 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--~   83 (185)
                      +.++|+++|++|+|||||+++|.+..+. ...+  +.......+.+++..+.+|||||++.+.      .....++.  .
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   81 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK   81 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence            3589999999999999999999987653 1222  3334455567778999999999987653      34455554  8


Q ss_pred             CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC----CHHHHHHhcCcccccCccceEEEeec
Q 029920           84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL----TPTEIAKVLNLEAMDKTRHWKIVGCS  159 (185)
Q Consensus        84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (185)
                      +|++++|+|+++.++   ...|+..+..    .+.|+++|+||+|+....    ...++..         ..+++++++|
T Consensus        82 ~~~~i~v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~---------~~~~~~~~~S  145 (165)
T 2wji_A           82 PDLVVNIVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEK---------ILGVKVVPLS  145 (165)
T ss_dssp             CSEEEEEEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHH---------HHTSCEEECB
T ss_pred             CCEEEEEecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHH---------HhCCCEEEEE
Confidence            999999999987543   3344444433    369999999999974321    1111111         1345799999


Q ss_pred             ccCCCCHHHHHHHHHHHHh
Q 029920          160 AYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~  178 (185)
                      |++|.|++++|+++.+.+.
T Consensus       146 A~~~~~v~~l~~~l~~~~~  164 (165)
T 2wji_A          146 AAKKMGIEELKKAISIAVK  164 (165)
T ss_dssp             GGGTBSHHHHHHHHHHHTT
T ss_pred             cCCCCCHHHHHHHHHHHhh
Confidence            9999999999999988763

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.91  E-value=1.2e-29  Score=179.27  Aligned_cols=168  Identities=20%  Similarity=0.286  Sum_probs=120.3

Q ss_pred             HHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEE--cCeEEEEEEcCCchhhHHHHHhhhc
Q 029920            7 IRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTY--QKYTLNIWDVGGQRTIRSYWRNYFE   82 (185)
Q Consensus         7 ~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~   82 (185)
                      +++.....+.++|+++|++|+|||||+++|.++.+. ...++.+... ..+..  ..+.+.+|||||++.+...+..+++
T Consensus        21 m~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~  100 (204)
T 3th5_A           21 MENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYP  100 (204)
Confidence            344444577899999999999999999999987764 3334443222 12222  3467779999999999999999999


Q ss_pred             CCCEEEEEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEeecCCCCCCCCHHH---------HHHhcCcccccCccc
Q 029920           83 QTDGLVWVVDSSDLRRLDDCK-MELDNLLKEERLSGASLLILANKQDINGALTPTE---------IAKVLNLEAMDKTRH  152 (185)
Q Consensus        83 ~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~---------~~~~~~~~~~~~~~~  152 (185)
                      .+|++++|+|++++.++.... .|+..+...  .++.|+++|+||+|+.+.....+         ....... .+....+
T Consensus       101 ~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~  177 (204)
T 3th5_A          101 QTDVFLICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL-AMAKEIG  177 (204)
Confidence            999999999999999998887 444444332  23789999999999865422111         1111111 1222234


Q ss_pred             e-EEEeecccCCCCHHHHHHHHHHHH
Q 029920          153 W-KIVGCSAYTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       153 ~-~~~~~Sa~~~~~i~~l~~~l~~~~  177 (185)
                      . +++++||++|.|+++++++|.+.+
T Consensus       178 ~~~~~~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          178 AVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            4 899999999999999999988754

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.95  E-value=3.4e-27  Score=176.49  Aligned_cols=165  Identities=20%  Similarity=0.268  Sum_probs=121.9

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc----ccccCcceEEEEEEE-cCeEEEEEEcCCchhh-----HHHHHhhhcCC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS----VISPTLGFNIKTVTY-QKYTLNIWDVGGQRTI-----RSYWRNYFEQT   84 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~----~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~-----~~~~~~~~~~~   84 (185)
                      ..+||+++|++|+|||||++++.++...    .+.+|.+.....+.+ ++..+.+|||||++.+     ...+..+++.+
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a   81 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV   81 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence            4689999999999999999999887443    456788877777775 6789999999999988     56778888999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHhcc-ccCCCeEEEEeecCCCCCCCCHHH---HHHhcCcccccCcc--ceEEEee
Q 029920           85 DGLVWVVDSSDLRRLDDCKMELDNLLKEE-RLSGASLLILANKQDINGALTPTE---IAKVLNLEAMDKTR--HWKIVGC  158 (185)
Q Consensus        85 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~  158 (185)
                      |++++|+|++++++++.+..|...+.... ..++.|+++|+||+|+.+.....+   ..............  .++++++
T Consensus        82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~t  161 (307)
T 3r7w_A           82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPT  161 (307)
T ss_dssp             SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEEC
T ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence            99999999999999988865543332211 235799999999999875322210   11111111111111  3789999


Q ss_pred             cccCCCCHHHHHHHHHHHHhhh
Q 029920          159 SAYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~~~~  180 (185)
                      ||++ .++.++|..+++.+.+.
T Consensus       162 Sa~~-~~i~e~~~~iv~~li~~  182 (307)
T 3r7w_A          162 SIWD-ESLYKAWSQIVCSLIPN  182 (307)
T ss_dssp             CTTS-SHHHHHHHHHHHTTCSC
T ss_pred             eecC-ChHHHHHHHHHHHHcCC
Confidence            9999 89999999988765443

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.95  E-value=1e-26  Score=157.99  Aligned_cols=147  Identities=18%  Similarity=0.265  Sum_probs=106.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEcCeEEEEEEcCCchh-------hHHHHHhhhcCCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQKYTLNIWDVGGQRT-------IRSYWRNYFEQTD   85 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d   85 (185)
                      ++|+++|++|+|||||++++.+..+....+    +.......+..++..+.+|||||+..       +...+..+++.+|
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   81 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE   81 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence            689999999999999999999887543222    33345556677888999999999876       4556677889999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccce-EEEeecccCCC
Q 029920           86 GLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHW-KIVGCSAYTGE  164 (185)
Q Consensus        86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  164 (185)
                      ++++|+|++++.+...  .++..++..   .+.|+++|+||+|+.+..  ++..+      +.. .+. +++++||++|.
T Consensus        82 ~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~~~~------~~~-~~~~~~~~~Sa~~~~  147 (161)
T 2dyk_A           82 VVLFAVDGRAELTQAD--YEVAEYLRR---KGKPVILVATKVDDPKHE--LYLGP------LYG-LGFGDPIPTSSEHAR  147 (161)
T ss_dssp             EEEEEEESSSCCCHHH--HHHHHHHHH---HTCCEEEEEECCCSGGGG--GGCGG------GGG-GSSCSCEECBTTTTB
T ss_pred             EEEEEEECCCcccHhH--HHHHHHHHh---cCCCEEEEEECcccccch--HhHHH------HHh-CCCCCeEEEecccCC
Confidence            9999999998644332  333444333   378999999999986541  11111      111 233 68999999999


Q ss_pred             CHHHHHHHHHHHH
Q 029920          165 GLLEGFDWLVQDI  177 (185)
Q Consensus       165 ~i~~l~~~l~~~~  177 (185)
                      |++++++++.+.+
T Consensus       148 gv~~l~~~l~~~l  160 (161)
T 2dyk_A          148 GLEELLEAIWERL  160 (161)
T ss_dssp             SHHHHHHHHHHHC
T ss_pred             ChHHHHHHHHHhC
Confidence            9999999998765

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.95  E-value=2.2e-26  Score=172.16  Aligned_cols=165  Identities=19%  Similarity=0.217  Sum_probs=122.3

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcc----eEEEEEEEc-CeEEEEEEcCCchh----------hHHH
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLG----FNIKTVTYQ-KYTLNIWDVGGQRT----------IRSY   76 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~----~~~~~~~~~-~~~~~~~D~~g~~~----------~~~~   76 (185)
                      .+.+.-.|+++|.+|+|||||+|+|.+..+...++..+    ........+ +.++.+|||||+..          +...
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~   85 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEI   85 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHH
Confidence            35667789999999999999999999998865544333    344455667 89999999999843          3356


Q ss_pred             HHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC-CCCCHHHHHHhcCcccccCccceEE
Q 029920           77 WRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN-GALTPTEIAKVLNLEAMDKTRHWKI  155 (185)
Q Consensus        77 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~  155 (185)
                      ...+++.+|++++|+|++++.++.....|+..+..    .+.|+++|+||+|+. +.....+....+....   ....++
T Consensus        86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~---~~~~~i  158 (308)
T 3iev_A           86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH---PELTEI  158 (308)
T ss_dssp             HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC---TTCCCE
T ss_pred             HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc---cCCCeE
Confidence            67788999999999999998887775554444433    379999999999987 4333333333322111   023579


Q ss_pred             EeecccCCCCHHHHHHHHHHHHhhhccc
Q 029920          156 VGCSAYTGEGLLEGFDWLVQDIASRIYL  183 (185)
Q Consensus       156 ~~~Sa~~~~~i~~l~~~l~~~~~~~~~~  183 (185)
                      +++||++|.|++++++++.+.+.+.-+.
T Consensus       159 ~~vSA~~g~gv~~L~~~l~~~l~~~~~~  186 (308)
T 3iev_A          159 VPISALKGANLDELVKTILKYLPEGEPL  186 (308)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHSCBCCCS
T ss_pred             EEEeCCCCCCHHHHHHHHHHhCccCCCC
Confidence            9999999999999999999998765443

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.94  E-value=3.8e-26  Score=170.13  Aligned_cols=160  Identities=19%  Similarity=0.148  Sum_probs=115.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEcCeEEEEEEcCCchh--------hHHHHHhhh
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQKYTLNIWDVGGQRT--------IRSYWRNYF   81 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~   81 (185)
                      .+..+|+++|++|+|||||+|+|++..+...++    |.......+..++.++.+|||||...        +......++
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l   84 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL   84 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence            455689999999999999999999988864433    22233334556789999999999765        556667788


Q ss_pred             cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecc
Q 029920           82 EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSA  160 (185)
Q Consensus        82 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (185)
                      +.+|++++|+|++++.+..  ..++...+... .++.|+++|+||+|+..... ..+....+       ....+++++||
T Consensus        85 ~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-------~~~~~~~~iSA  154 (301)
T 1wf3_A           85 ADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKYPEEAMKAYHEL-------LPEAEPRMLSA  154 (301)
T ss_dssp             SSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHHHHHHHHHT-------STTSEEEECCT
T ss_pred             hcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEECcccCCchHHHHHHHHHh-------cCcCcEEEEeC
Confidence            9999999999999865443  34443333332 24689999999999875422 22222222       13457899999


Q ss_pred             cCCCCHHHHHHHHHHHHhhhccc
Q 029920          161 YTGEGLLEGFDWLVQDIASRIYL  183 (185)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~~~~~~  183 (185)
                      ++|.|++++++.+.+.+.+..+.
T Consensus       155 ~~g~gv~~l~~~l~~~l~~~~~~  177 (301)
T 1wf3_A          155 LDERQVAELKADLLALMPEGPFF  177 (301)
T ss_dssp             TCHHHHHHHHHHHHTTCCBCCCS
T ss_pred             CCCCCHHHHHHHHHHhcccCCCC
Confidence            99999999999999877654433

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.94  E-value=1.4e-25  Score=169.18  Aligned_cols=165  Identities=20%  Similarity=0.250  Sum_probs=119.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ....++|+++|++|+|||||++++.++.+. .+.+|.+.. ...+..++  +.+.+|||||++.+...+..+++.+|+++
T Consensus       152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  231 (332)
T 2wkq_A          152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  231 (332)
T ss_dssp             HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred             ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence            456799999999999999999999977664 445555533 23345555  45669999999999989999999999999


Q ss_pred             EEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCc--------ccccCccc-eEEEee
Q 029920           89 WVVDSSDLRRLDDCK-MELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNL--------EAMDKTRH-WKIVGC  158 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~--------~~~~~~~~-~~~~~~  158 (185)
                      +|+|++++.++.... .|+..+...  ..+.|+++|+||+|+.......+.......        ..+....+ .+++++
T Consensus       232 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  309 (332)
T 2wkq_A          232 ICFSLVSPASFHHVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  309 (332)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--CTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhh--CCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence            999999999999887 444444333  237999999999998543111111110000        00111123 389999


Q ss_pred             cccCCCCHHHHHHHHHHHHhh
Q 029920          159 SAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                      ||++|.|+++++++|.+.+.+
T Consensus       310 Sa~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          310 SALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             cCCCCcCHHHHHHHHHHHHhc
Confidence            999999999999999987754

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.94  E-value=1.5e-26  Score=161.31  Aligned_cols=160  Identities=17%  Similarity=0.221  Sum_probs=108.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEEEEEcCeEEEEEEcCC-----------chhhHHHHHhhhcC-
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKTVTYQKYTLNIWDVGG-----------QRTIRSYWRNYFEQ-   83 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~~~~-   83 (185)
                      ++|+++|++|+|||||+++|.+..+. ...++.......+...  .+.+|||||           ++.+...+..+++. 
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN   79 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence            68999999999999999999998764 2334333333334444  789999999           66777777777776 


Q ss_pred             CCEEEEEEeCCCcccHHHHHHHHHH---------HHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccc
Q 029920           84 TDGLVWVVDSSDLRRLDDCKMELDN---------LLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRH  152 (185)
Q Consensus        84 ~d~~i~v~d~~~~~s~~~~~~~~~~---------~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~  152 (185)
                      ++++++|+++.+..++......|..         +.......+.|+++|+||+|+....  ..+++...++.. ... ..
T Consensus        80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~-~~  157 (190)
T 2cxx_A           80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVP-LSE-ID  157 (190)
T ss_dssp             GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCC-GGG-HH
T ss_pred             hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhh-hhc-cC
Confidence            7766666666666777766332221         2222233579999999999987653  112222222210 000 12


Q ss_pred             eEEEeecccCCCCHHHHHHHHHHHHhhh
Q 029920          153 WKIVGCSAYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       153 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (185)
                      .+++++||++|.|++++++++.+.+.+.
T Consensus       158 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~~  185 (190)
T 2cxx_A          158 KVFIPISAKFGDNIERLKNRIFEVIRER  185 (190)
T ss_dssp             HHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             CcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence            4589999999999999999999988654

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.94  E-value=6.2e-25  Score=154.55  Aligned_cols=160  Identities=18%  Similarity=0.326  Sum_probs=121.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ...++|+++|++|||||||++++.+..+. ...++.+  +....+.+++  +.+.+||++|++.+...+..+++.+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            45789999999999999999999998774 3445544  3344566666  56789999999988888888889999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL  166 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (185)
                      +|+|+++..++.....|+..+... ...+.|+++++||+|+.+..  ...+.....      ...++.++++||+++.|+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~------~~~~~~~~d~Sal~~~~i  155 (199)
T 2f9l_A           83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFA------EKNNLSFIETSALDSTNV  155 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH------HHTTCEEEECCTTTCTTH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHH------HHcCCeEEEEeCCCCCCH
Confidence            999999988888877776655432 23468999999999986432  222222211      115568899999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 029920          167 LEGFDWLVQDIASR  180 (185)
Q Consensus       167 ~~l~~~l~~~~~~~  180 (185)
                      ++++++|.+.+.+.
T Consensus       156 ~~l~~~l~~~~~~~  169 (199)
T 2f9l_A          156 EEAFKNILTEIYRI  169 (199)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999987653

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.94  E-value=2.7e-26  Score=164.01  Aligned_cols=163  Identities=15%  Similarity=0.132  Sum_probs=109.2

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCC-CcccccCcc----eEEEEEE-EcCeEEEEEEcCCc----------hhhHHH
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGED-TSVISPTLG----FNIKTVT-YQKYTLNIWDVGGQ----------RTIRSY   76 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~-~~~~~~t~~----~~~~~~~-~~~~~~~~~D~~g~----------~~~~~~   76 (185)
                      ..+.++|+|+|.+|+|||||+++|++.. .....++.+    .....+. .++..+.+|||||.          +.+...
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  105 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL  105 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence            4567899999999999999999999987 333333332    2222232 34578999999994          444556


Q ss_pred             HHhhhcC---CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCccccc-----
Q 029920           77 WRNYFEQ---TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMD-----  148 (185)
Q Consensus        77 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----  148 (185)
                      ...++..   +|++++|+|++++.+..  ...+...+..   .+.|+++|+||+|+............+......     
T Consensus       106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~--~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  180 (223)
T 4dhe_A          106 LSSYLQTRPQLCGMILMMDARRPLTEL--DRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAG  180 (223)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHH--HHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCcCcCEEEEEEeCCCCCCHH--HHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcc
Confidence            6666655   78899999999754322  2222233332   378999999999987643322222211111111     


Q ss_pred             CccceEEEeecccCCCCHHHHHHHHHHHHhhh
Q 029920          149 KTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       149 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (185)
                      .....+++++||++|.|+++++++|.+.+.+.
T Consensus       181 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          181 YAGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             CCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             cCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence            02567899999999999999999999988653

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=2e-26  Score=168.33  Aligned_cols=149  Identities=23%  Similarity=0.264  Sum_probs=109.4

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCc-cc--ccCcceEEEEEEEcCeEEEEEEcCCchhhHH------HHHhhh--c
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VI--SPTLGFNIKTVTYQKYTLNIWDVGGQRTIRS------YWRNYF--E   82 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~   82 (185)
                      .+.++|+++|++|||||||+|+|++..+. ..  +.|.......+...+..+.+|||||+..+..      ....++  .
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~   82 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG   82 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence            46789999999999999999999987763 11  2233344555667789999999999876543      334444  5


Q ss_pred             CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC----HHHHHHhcCcccccCccceEEEee
Q 029920           83 QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT----PTEIAKVLNLEAMDKTRHWKIVGC  158 (185)
Q Consensus        83 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  158 (185)
                      .+|++++|+|+++.++..   .++..+..    .+.|+++|+||+|+.....    ...+..         ..+++++++
T Consensus        83 ~~d~ii~V~D~t~~~~~~---~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~---------~lg~~vi~~  146 (258)
T 3a1s_A           83 DADLVILVADSVNPEQSL---YLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQK---------HLGIPVVFT  146 (258)
T ss_dssp             CCSEEEEEEETTSCHHHH---HHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHH---------HHCSCEEEC
T ss_pred             CCCEEEEEeCCCchhhHH---HHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHH---------HcCCCEEEE
Confidence            899999999999865433   34444433    2799999999999743211    122222         245689999


Q ss_pred             cccCCCCHHHHHHHHHHHHh
Q 029920          159 SAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      ||++|.|++++++++.+.+.
T Consensus       147 SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          147 SSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             EeeCCcCHHHHHHHHHHHhh
Confidence            99999999999999998775

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=2.6e-26  Score=159.91  Aligned_cols=152  Identities=25%  Similarity=0.291  Sum_probs=111.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCc-cccc--CcceEEEEEEEcCeEEEEEEcCCchhhH------HHHHhhhc--
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISP--TLGFNIKTVTYQKYTLNIWDVGGQRTIR------SYWRNYFE--   82 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--   82 (185)
                      .+.++|+++|++|+|||||+++|++..+. ...+  +.......+..++..+.+|||||++.+.      .....++.  
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   84 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE   84 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence            35689999999999999999999987542 2223  3334555677788999999999987763      34555554  


Q ss_pred             CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC----CHHHHHHhcCcccccCccceEEEee
Q 029920           83 QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL----TPTEIAKVLNLEAMDKTRHWKIVGC  158 (185)
Q Consensus        83 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  158 (185)
                      .+|++++|+|.++   ++....++..+..    .+.|+++|+||+|+....    ...++...         .+++++++
T Consensus        85 ~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~~~~~  148 (188)
T 2wjg_A           85 KPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKI---------LGVKVVPL  148 (188)
T ss_dssp             CCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHH---------HTSCEEEC
T ss_pred             CCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHH---------hCCCeEEE
Confidence            5999999999975   4555555555543    378999999999974321    11222211         34579999


Q ss_pred             cccCCCCHHHHHHHHHHHHhhhc
Q 029920          159 SAYTGEGLLEGFDWLVQDIASRI  181 (185)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~~~~~  181 (185)
                      ||+++.|++++++++.+.+.+..
T Consensus       149 Sa~~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          149 SAAKKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             BGGGTBSHHHHHHHHHHHHTTC-
T ss_pred             EecCCCCHHHHHHHHHHHHHhcc
Confidence            99999999999999999887654

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.93  E-value=6e-27  Score=170.84  Aligned_cols=148  Identities=16%  Similarity=0.145  Sum_probs=106.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCeEEEEEEcCCchhhHH----------HHHhhh--
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRS----------YWRNYF--   81 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~--   81 (185)
                      .+|+++|.+|||||||+|+|.+....   ....|.......+.+++..+.+|||||...+..          ....++  
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~   81 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID   81 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence            58999999999999999999998652   122344455666777889999999999876543          455666  


Q ss_pred             cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeeccc
Q 029920           82 EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAY  161 (185)
Q Consensus        82 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (185)
                      +.+|++++|+|+++.+++..+..   .+..    .+.|+++|+||+|+............     +....+++++++||+
T Consensus        82 ~~~d~vi~VvDas~~~~~~~l~~---~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~-----l~~~lg~~vi~~SA~  149 (256)
T 3iby_A           82 LEYDCIINVIDACHLERHLYLTS---QLFE----LGKPVVVALNMMDIAEHRGISIDTEK-----LESLLGCSVIPIQAH  149 (256)
T ss_dssp             SCCSEEEEEEEGGGHHHHHHHHH---HHTT----SCSCEEEEEECHHHHHHTTCEECHHH-----HHHHHCSCEEECBGG
T ss_pred             CCCCEEEEEeeCCCchhHHHHHH---HHHH----cCCCEEEEEEChhcCCcCCcHHHHHH-----HHHHcCCCEEEEECC
Confidence            88999999999998654443332   2222    27999999999997543211111111     111145689999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 029920          162 TGEGLLEGFDWLVQD  176 (185)
Q Consensus       162 ~~~~i~~l~~~l~~~  176 (185)
                      +|.|++++++++.+.
T Consensus       150 ~g~gi~el~~~i~~~  164 (256)
T 3iby_A          150 KNIGIPALQQSLLHC  164 (256)
T ss_dssp             GTBSHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHhh
Confidence            999999999999876

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.93  E-value=3.5e-26  Score=166.89  Aligned_cols=162  Identities=18%  Similarity=0.158  Sum_probs=110.2

Q ss_pred             ccCceeEEEEEcCC---------CCChHHHHHHHhCC---CC-cccccCc-c--eEEE----------------EEEEcC
Q 029920           12 KKEKEMRILMVGLD---------NSGKTTIVLKINGE---DT-SVISPTL-G--FNIK----------------TVTYQK   59 (185)
Q Consensus        12 ~~~~~~~i~v~G~~---------~~GKttli~~l~~~---~~-~~~~~t~-~--~~~~----------------~~~~~~   59 (185)
                      .....+||+++|.+         |+|||||+++|.+.   .+ ..+.++. +  +...                .+....
T Consensus        15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   94 (255)
T 3c5h_A           15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE   94 (255)
T ss_dssp             SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred             CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence            35567999999999         99999999999984   33 2222322 1  1000                012344


Q ss_pred             eEEEEEE-----------------------cCCchhhHHHHHhhhc---------------------CCCEEEEEEeCCC
Q 029920           60 YTLNIWD-----------------------VGGQRTIRSYWRNYFE---------------------QTDGLVWVVDSSD   95 (185)
Q Consensus        60 ~~~~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~   95 (185)
                      +.+.+||                       ++|++.+...+..++.                     ++|++++|||+++
T Consensus        95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~  174 (255)
T 3c5h_A           95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR  174 (255)
T ss_dssp             -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred             EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence            7899999                       5555555555555555                     7999999999999


Q ss_pred             c--ccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHH
Q 029920           96 L--RRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL  173 (185)
Q Consensus        96 ~--~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (185)
                      +  .+++.+..|+..+.......+.|+++|+||+|+.+....++....     .....+++++++||++|.|++++|++|
T Consensus       175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~-----~~~~~~~~~~e~SAk~g~gv~elf~~l  249 (255)
T 3c5h_A          175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTF-----ALSKKNLQVVETSARSNVNVDLAFSTL  249 (255)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHH-----HHTSSSCCEEECBTTTTBSHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHH-----HHhcCCCeEEEEECCCCCCHHHHHHHH
Confidence            8  999999988888776534457999999999998543222111111     111135689999999999999999999


Q ss_pred             HHHHh
Q 029920          174 VQDIA  178 (185)
Q Consensus       174 ~~~~~  178 (185)
                      .+.+.
T Consensus       250 ~~~l~  254 (255)
T 3c5h_A          250 VQLID  254 (255)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            98764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.93  E-value=7.1e-27  Score=172.16  Aligned_cols=154  Identities=19%  Similarity=0.183  Sum_probs=108.3

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCeEEEEEEcCCchhhH----------HHHHhhh
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR----------SYWRNYF   81 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~~~~~   81 (185)
                      +.++|+++|.+|||||||+|+|++....   ..+.|.......+...+..+.+|||||+..+.          .....++
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~   81 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI   81 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence            4689999999999999999999998752   11223444555667778899999999976654          2233333


Q ss_pred             --cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeec
Q 029920           82 --EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCS  159 (185)
Q Consensus        82 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (185)
                        +.+|++++|+|+++.++......++..   .    +.|+++|+||+|+.+..........     +....+++++++|
T Consensus        82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~---~----~~p~ivv~NK~Dl~~~~~~~~~~~~-----l~~~lg~~~i~~S  149 (274)
T 3i8s_A           82 LSGDADLLINVVDASNLERNLYLTLQLLE---L----GIPCIVALNMLDIAEKQNIRIEIDA-----LSARLGCPVIPLV  149 (274)
T ss_dssp             HHTCCSEEEEEEEGGGHHHHHHHHHHHHH---H----TCCEEEEEECHHHHHHTTEEECHHH-----HHHHHTSCEEECC
T ss_pred             hhcCCCEEEEEecCCChHHHHHHHHHHHh---c----CCCEEEEEECccchhhhhHHHHHHH-----HHHhcCCCEEEEE
Confidence              789999999999985544443333332   2    7999999999997543221111111     1111456899999


Q ss_pred             ccCCCCHHHHHHHHHHHHhhh
Q 029920          160 AYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~~  180 (185)
                      |++|.|++++++++.+.+.+.
T Consensus       150 A~~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          150 STRGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             CGGGHHHHHHHHHHHTCCCCC
T ss_pred             cCCCCCHHHHHHHHHHHHhcC
Confidence            999999999999998876543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.93  E-value=1.4e-25  Score=175.16  Aligned_cols=159  Identities=16%  Similarity=0.153  Sum_probs=114.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCc----ceEEEEEEEcCeEEEEEEcCCc----------hhhHHHHH-h
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTL----GFNIKTVTYQKYTLNIWDVGGQ----------RTIRSYWR-N   79 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~~-~   79 (185)
                      ..++|+++|++|+|||||+|+|.+......++..    ......+..++..+.+|||||+          +.+..... .
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~  253 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK  253 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence            5689999999999999999999998764333322    2333456778889999999997          44444433 4


Q ss_pred             hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEe
Q 029920           80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVG  157 (185)
Q Consensus        80 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      +++.+|++++|+|++++.+++.. .++..+.    ..++|+++|+||+|+.+...  .++....+.. .+......++++
T Consensus       254 ~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~----~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~  327 (436)
T 2hjg_A          254 AIDRSEVVAVVLDGEEGIIEQDK-RIAGYAH----EAGKAVVIVVNKWDAVDKDESTMKEFEENIRD-HFQFLDYAPILF  327 (436)
T ss_dssp             HHHHCSEEEEEEETTTCCCHHHH-HHHHHHH----HTTCEEEEEEECGGGSCCCTTHHHHHHHHHHH-HCGGGTTSCEEE
T ss_pred             HHHhCCEEEEEEcCCcCCcHHHH-HHHHHHH----HcCCcEEEEEECccCCCcchHHHHHHHHHHHH-hcccCCCCCEEE
Confidence            78899999999999998887764 3333332    24799999999999876533  2233322221 122225678999


Q ss_pred             ecccCCCCHHHHHHHHHHHHhh
Q 029920          158 CSAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       158 ~Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                      +||++|.|++++++.+.+.+.+
T Consensus       328 ~SA~tg~~v~~l~~~i~~~~~~  349 (436)
T 2hjg_A          328 MSALTKKRIHTLMPAIIKASEN  349 (436)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHHH
T ss_pred             EecccCCCHHHHHHHHHHHHHH
Confidence            9999999999999999987764

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.92  E-value=3e-26  Score=168.34  Aligned_cols=147  Identities=22%  Similarity=0.262  Sum_probs=103.3

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-cccc--CcceEEEEEEEcCeEEEEEEcCCchhhH------HHHHhhhc--C
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISP--TLGFNIKTVTYQKYTLNIWDVGGQRTIR------SYWRNYFE--Q   83 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--~   83 (185)
                      ..++|+++|++|||||||+|+|++.... ...+  |.......+.. +..+.+|||||+..+.      .....++.  .
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~   80 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR   80 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence            3589999999999999999999987532 1112  22222333333 6789999999987764      44555664  6


Q ss_pred             CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC----CHHHHHHhcCcccccCccceEEEeec
Q 029920           84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL----TPTEIAKVLNLEAMDKTRHWKIVGCS  159 (185)
Q Consensus        84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (185)
                      +|++++|+|+++.++.   ..++..+..    .+.|+++++||+|+....    ....+..         ..+++++++|
T Consensus        81 ~d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~---------~lg~~vi~~S  144 (272)
T 3b1v_A           81 ADSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSY---------HLGVPVVATS  144 (272)
T ss_dssp             CSEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHH---------HHTSCEEECB
T ss_pred             CCEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHH---------HcCCCEEEEE
Confidence            9999999999885443   333344333    379999999999974321    1122222         1356899999


Q ss_pred             ccCCCCHHHHHHHHHHHHh
Q 029920          160 AYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~  178 (185)
                      |++|.|++++++++.+.+.
T Consensus       145 A~~g~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          145 ALKQTGVDQVVKKAAHTTT  163 (272)
T ss_dssp             TTTTBSHHHHHHHHHHSCT
T ss_pred             ccCCCCHHHHHHHHHHHHh
Confidence            9999999999999988764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.92  E-value=4.1e-24  Score=149.52  Aligned_cols=158  Identities=16%  Similarity=0.309  Sum_probs=120.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce--EEEEEEEcCe--EEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF--NIKTVTYQKY--TLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~--~~~~~~~~~~--~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      ....++|+++|++|||||||++++.+..++ ...+|.+.  ....+.+++.  .+.+||++|.+.+...+..+++.++++
T Consensus        26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~  105 (191)
T 1oix_A           26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA  105 (191)
T ss_dssp             CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence            455799999999999999999999998775 45566654  3445666664  566799999988888888888999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      ++|+|+++..+++.+..|+..+... ...+.|+++++||+|+.+.  ..........      ...++.++++||+++.|
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~------~~~~~~~ld~Sald~~~  178 (191)
T 1oix_A          106 LLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFA------EKNGLSFIETSALDSTN  178 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH------HHTTCEEEECCTTTCTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHH------HHcCCEEEEEeCCCCCC
Confidence            9999999988888777766654332 2346899999999998642  2222222211      11456889999999999


Q ss_pred             HHHHHHHHHHHH
Q 029920          166 LLEGFDWLVQDI  177 (185)
Q Consensus       166 i~~l~~~l~~~~  177 (185)
                      ++++++.|.+.+
T Consensus       179 v~~l~~~l~~~i  190 (191)
T 1oix_A          179 VEAAFQTILTEI  190 (191)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.92  E-value=4.8e-25  Score=172.97  Aligned_cols=156  Identities=19%  Similarity=0.250  Sum_probs=99.5

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEcCeEEEEEEcCCchhhHHHH--------Hhh
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQKYTLNIWDVGGQRTIRSYW--------RNY   80 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~   80 (185)
                      .+..++|+++|.+|+|||||+|+|.+......++    |.......+.+++..+.+|||||+..+...+        ..+
T Consensus       230 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          230 VSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CC
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            3456899999999999999999999986543333    3334445677889999999999987755433        336


Q ss_pred             hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecc
Q 029920           81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSA  160 (185)
Q Consensus        81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (185)
                      ++.+|++++|+|++++.++..... ...++....  +.|+++|+||+|+........  +.+...     ...+++++||
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~-~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~--~~l~~~-----~~~~~i~vSA  379 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTE-IRELKAAHP--AAKFLTVANKLDRAANADALI--RAIADG-----TGTEVIGISA  379 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHH-HHHHHHHCT--TSEEEEEEECTTSCTTTHHHH--HHHHHH-----HTSCEEECBT
T ss_pred             cccCCEEEEEEECCCCcchhhhHH-HHHHHHhcC--CCCEEEEEECcCCCCccchhH--HHHHhc-----CCCceEEEEE
Confidence            789999999999999877753222 223333322  799999999999976543321  111110     1246899999


Q ss_pred             cCCCCHHHHHHHHHHHHh
Q 029920          161 YTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~  178 (185)
                      ++|.|+++++++|.+.+.
T Consensus       380 ktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          380 LNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             TTTBSHHHHHHHHTHHHH
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999999886

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.92  E-value=2.8e-25  Score=163.50  Aligned_cols=151  Identities=21%  Similarity=0.204  Sum_probs=110.4

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCeEEEEEEcCCchhhHH------HHHhhh--cC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRS------YWRNYF--EQ   83 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~   83 (185)
                      +.++|+++|++|||||||+++|++..+.   ....+.......+.+++..+.+|||||+..+..      ....++  ..
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~   81 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN   81 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence            4689999999999999999999998762   112234455556777889999999999876554      455555  68


Q ss_pred             CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC----CCHHHHHHhcCcccccCccceEEEeec
Q 029920           84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA----LTPTEIAKVLNLEAMDKTRHWKIVGCS  159 (185)
Q Consensus        84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (185)
                      +|++++|+|+++.   .....++..+...   ...|+++++||+|+.+.    .....+...         .+++++++|
T Consensus        82 ~d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~---------lg~~~~~~S  146 (271)
T 3k53_A           82 ADVIVDIVDSTCL---MRNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKE---------LGVPVIPTN  146 (271)
T ss_dssp             CSEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHH---------HSSCEEECB
T ss_pred             CcEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHH---------cCCcEEEEE
Confidence            9999999999874   3333444444333   13999999999996421    122222222         346799999


Q ss_pred             ccCCCCHHHHHHHHHHHHhhh
Q 029920          160 AYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~~  180 (185)
                      |++|.|++++++.+.+.+.+.
T Consensus       147 a~~g~gi~~l~~~i~~~~~~~  167 (271)
T 3k53_A          147 AKKGEGVEELKRMIALMAEGK  167 (271)
T ss_dssp             GGGTBTHHHHHHHHHHHHHTC
T ss_pred             eCCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999987654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.92  E-value=1.7e-24  Score=169.08  Aligned_cols=150  Identities=20%  Similarity=0.279  Sum_probs=104.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcccccCcc----eEEEEEEEcCeEEEEEEcCCchh---------hHHHHHhhhcC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVISPTLG----FNIKTVTYQKYTLNIWDVGGQRT---------IRSYWRNYFEQ   83 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~   83 (185)
                      .+|+++|.||+|||||+|+|++.......++.+    .....+.+++..+.+|||||.+.         +..+...+++.
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~   81 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   81 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence            589999999999999999999987654444433    44556778899999999999653         45567788999


Q ss_pred             CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHH-HHhcCcccccCccce-EEEeeccc
Q 029920           84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEI-AKVLNLEAMDKTRHW-KIVGCSAY  161 (185)
Q Consensus        84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~Sa~  161 (185)
                      +|++++|+|++++.+...  .++..++..   .++|+++|+||+|+.+.. ..+. .+..      . .+. +++++||+
T Consensus        82 ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~------~-lg~~~~~~iSA~  148 (439)
T 1mky_A           82 ADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREF-EREVKPELY------S-LGFGEPIPVSAE  148 (439)
T ss_dssp             CSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHG------G-GSSCSCEECBTT
T ss_pred             CCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHH------h-cCCCCEEEEecc
Confidence            999999999987654432  233333332   268999999999974320 1111 1111      1 222 47999999


Q ss_pred             CCCCHHHHHHHHHHHHhh
Q 029920          162 TGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~  179 (185)
                      +|.|++++++++.+.+.+
T Consensus       149 ~g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          149 HNINLDTMLETIIKKLEE  166 (439)
T ss_dssp             TTBSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhccc
Confidence            999999999999988764

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.92  E-value=8.1e-25  Score=165.20  Aligned_cols=159  Identities=22%  Similarity=0.216  Sum_probs=115.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcC-eEEEEEEcCCchh-------hHHHHHhhhcCCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQK-YTLNIWDVGGQRT-------IRSYWRNYFEQTD   85 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~-------~~~~~~~~~~~~d   85 (185)
                      .+|+++|.+|+|||||+++|++....   ....|.......+.+++ ..+.+|||||..+       +......+++.+|
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d  238 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR  238 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence            46899999999999999999887642   12244455555677765 8999999999643       2222333455699


Q ss_pred             EEEEEEeCCC---cccHHHHHHHHHHHHhccc-cCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecc
Q 029920           86 GLVWVVDSSD---LRRLDDCKMELDNLLKEER-LSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSA  160 (185)
Q Consensus        86 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (185)
                      ++++|+|+++   +.+++....++..+..+.. ..++|+++|+||+|+....+ .+++...+.       ...+++++||
T Consensus       239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~-------~~~~v~~iSA  311 (342)
T 1lnz_A          239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT-------DDYPVFPISA  311 (342)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC-------SCCCBCCCSS
T ss_pred             EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhh-------cCCCEEEEEC
Confidence            9999999998   7788887777776655421 34799999999999865321 112222221       1157899999


Q ss_pred             cCCCCHHHHHHHHHHHHhhhcc
Q 029920          161 YTGEGLLEGFDWLVQDIASRIY  182 (185)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~~~~~  182 (185)
                      +++.|+++++++|.+.+.+...
T Consensus       312 ~tg~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          312 VTREGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             CCSSTTHHHHHHHHHHHTSCCC
T ss_pred             CCCcCHHHHHHHHHHHHhhCcc
Confidence            9999999999999999876543

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.92  E-value=1.5e-24  Score=173.18  Aligned_cols=157  Identities=19%  Similarity=0.288  Sum_probs=108.6

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEEEE--------E----cCeEEEEEEcCCchhhHHHHHh
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKTVT--------Y----QKYTLNIWDVGGQRTIRSYWRN   79 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~~~--------~----~~~~~~~~D~~g~~~~~~~~~~   79 (185)
                      ....+||+++|.+|||||||++++.+..+. ...+|.+.......        .    ....+.+|||||++.+......
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            456799999999999999999999998774 45566665554321        1    2589999999999999988888


Q ss_pred             hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEe
Q 029920           80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVG  157 (185)
Q Consensus        80 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      +++.+|++++|+|+++.+..   ..|+..+....  ++.|+++|+||+|+.+...  .++.......      .+.++++
T Consensus       118 ~l~~~d~ii~V~D~s~~~~~---~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~------~~~~~~~  186 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTDSNK---HYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFPA------IENRFHR  186 (535)
T ss_dssp             HHHSSEEEEEEECGGGGGGH---HHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGG------GTTCEEE
T ss_pred             HccCCcEEEEEEeCCCchhH---HHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHHh------cCCceEE
Confidence            99999999999999876444   34444443332  3689999999999865432  3333333321      4457999


Q ss_pred             ecccCCCCHHHHHHHHHHHHhhh
Q 029920          158 CSAYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       158 ~Sa~~~~~i~~l~~~l~~~~~~~  180 (185)
                      +||++|.|++++++++.+.+.+.
T Consensus       187 vSA~~g~gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          187 ISCKNGDGVESIAKSLKSAVLHP  209 (535)
T ss_dssp             CCC-----CTTHHHHHHHHHTCT
T ss_pred             EecCcccCHHHHHHHHHHHHhcc
Confidence            99999999999999999988664

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.92  E-value=6.2e-26  Score=161.71  Aligned_cols=123  Identities=24%  Similarity=0.366  Sum_probs=95.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcC----CCEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQ----TDGLV   88 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~----~d~~i   88 (185)
                      ..+.++|+++|++|+|||||+++|.+..+.....+...+.. ..+....+.+|||||++.+...+..++..    +|+++
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i   87 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI   87 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEE-TTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEE
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEE-EEeeCceEEEEECCCcHHHHHHHHHHHHhccccCCEEE
Confidence            56789999999999999999999998876432211111111 11255789999999999998888888877    89999


Q ss_pred             EEEeCC-CcccHHHHHHHHHHHHhccc---cCCCeEEEEeecCCCCCCCCHH
Q 029920           89 WVVDSS-DLRRLDDCKMELDNLLKEER---LSGASLLILANKQDINGALTPT  136 (185)
Q Consensus        89 ~v~d~~-~~~s~~~~~~~~~~~~~~~~---~~~~~~ivv~nK~D~~~~~~~~  136 (185)
                      +|+|++ +++++.....++..++....   ..+.|+++|+||+|+.......
T Consensus        88 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~  139 (218)
T 1nrj_B           88 FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS  139 (218)
T ss_dssp             EEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred             EEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH
Confidence            999999 88899999998888876532   2579999999999998766543

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.91  E-value=1.5e-24  Score=170.32  Aligned_cols=151  Identities=23%  Similarity=0.329  Sum_probs=113.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCccc----ccCcceEEEEEEEcCeEEEEEEcCCch-hhH--------HHHHhhh
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSVI----SPTLGFNIKTVTYQKYTLNIWDVGGQR-TIR--------SYWRNYF   81 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~g~~-~~~--------~~~~~~~   81 (185)
                      ..++|+++|.+|+|||||+|+|.+......    ..|.......+.+++..+.+|||||.. ...        .....++
T Consensus       242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~  321 (482)
T 1xzp_A          242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI  321 (482)
T ss_dssp             HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence            348999999999999999999998764322    234445566778889999999999987 432        2345678


Q ss_pred             cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeeccc
Q 029920           82 EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAY  161 (185)
Q Consensus        82 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (185)
                      +.+|++++|+|++++.+++.. ..+ ..+     .++|+++|+||+|+.+....+++.....       ...+++++||+
T Consensus       322 ~~aD~vl~VvD~s~~~s~~~~-~il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~-------~~~~~i~iSAk  387 (482)
T 1xzp_A          322 EKADIVLFVLDASSPLDEEDR-KIL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLG-------TDRHMVKISAL  387 (482)
T ss_dssp             HHCSEEEEEEETTSCCCHHHH-HHH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHT-------CSTTEEEEEGG
T ss_pred             hcccEEEEEecCCCCCCHHHH-HHH-HHh-----cCCCEEEEEECcccccccCHHHHHHHhc-------CCCcEEEEECC
Confidence            899999999999998777552 222 222     3689999999999976544444433221       23468999999


Q ss_pred             CCCCHHHHHHHHHHHHhh
Q 029920          162 TGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~  179 (185)
                      +|.|+++++++|.+.+..
T Consensus       388 tg~Gi~eL~~~l~~~~~~  405 (482)
T 1xzp_A          388 KGEGLEKLEESIYRETQE  405 (482)
T ss_dssp             GTCCHHHHHHHHHHHTHH
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999997653

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.91  E-value=1.4e-23  Score=159.96  Aligned_cols=158  Identities=15%  Similarity=0.197  Sum_probs=116.5

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcc---cccCcceEEEEEEEcCeEEEEEEcCCchhhH---------HHHHhhh
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSV---ISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR---------SYWRNYF   81 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~   81 (185)
                      ...++|+++|++|+|||||+++|.+.....   ...|.......+..++..+.+|||||.....         .......
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~  244 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR  244 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence            467899999999999999999999987531   2335555566666778899999999974321         1222344


Q ss_pred             cCCCEEEEEEeCCCcc--cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeec
Q 029920           82 EQTDGLVWVVDSSDLR--RLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCS  159 (185)
Q Consensus        82 ~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (185)
                      ..+|++++|+|++++.  ++.....++..+.....  +.|+++|+||+|+.......+......      ..+.+++++|
T Consensus       245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~iS  316 (357)
T 2e87_A          245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVADEENIKRLEKFVK------EKGLNPIKIS  316 (357)
T ss_dssp             GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTCCHHHHHHHHHHHH------HTTCCCEECB
T ss_pred             hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccCChHHHHHHHHHHH------hcCCCeEEEe
Confidence            5689999999998876  67777777776655432  799999999999865432222222111      1456799999


Q ss_pred             ccCCCCHHHHHHHHHHHHhh
Q 029920          160 AYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~  179 (185)
                      |++|.|++++++++.+.+..
T Consensus       317 A~~g~gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          317 ALKGTGIDLVKEEIIKTLRP  336 (357)
T ss_dssp             TTTTBTHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHH
Confidence            99999999999999998754

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.91  E-value=2.8e-24  Score=166.26  Aligned_cols=164  Identities=20%  Similarity=0.102  Sum_probs=115.0

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEE-----------------------EEEcCeEEEEEEcC
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT-----------------------VTYQKYTLNIWDVG   68 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~-----------------------~~~~~~~~~~~D~~   68 (185)
                      ...+.++|+++|++|+|||||+++|.+............+...                       .......+.+||||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            3567899999999999999999999985443211000000000                       01112689999999


Q ss_pred             CchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCccc-c
Q 029920           69 GQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEA-M  147 (185)
Q Consensus        69 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-~  147 (185)
                      |++.+...+..++..+|++++|+|+++..++.....++......   ...|+++++||+|+.+.....+..+.+.... .
T Consensus        84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~  160 (403)
T 3sjy_A           84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG  160 (403)
T ss_dssp             CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999876666666666544332   1358999999999976532222222211100 1


Q ss_pred             cCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          148 DKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       148 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      .....++++++||++|.|+++++++|.+.+.
T Consensus       161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          161 TWAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             hCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence            1124678999999999999999999998764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.91  E-value=3.6e-24  Score=168.00  Aligned_cols=161  Identities=17%  Similarity=0.209  Sum_probs=113.5

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcc----eEEEEEEEcCeEEEEEEcCC----------chhhHHHHH-
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLG----FNIKTVTYQKYTLNIWDVGG----------QRTIRSYWR-   78 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~-   78 (185)
                      ...++|+++|.+|+|||||+++|.+......++..+    .....+..++..+.+|||||          ++.+..... 
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~  272 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL  272 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence            457899999999999999999999876543333222    33345677888999999999          666665544 


Q ss_pred             hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEE
Q 029920           79 NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIV  156 (185)
Q Consensus        79 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  156 (185)
                      .+++.+|++++|+|+++..+..  ..++...+..   .++|+++|+||+|+.+...  .++..+.... .+......+++
T Consensus       273 ~~~~~ad~~llviD~~~~~~~~--~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  346 (456)
T 4dcu_A          273 KAIDRSEVVAVVLDGEEGIIEQ--DKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRD-HFQFLDYAPIL  346 (456)
T ss_dssp             HHHHHCSEEEEEEETTTCCCHH--HHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHH-HCGGGTTSCEE
T ss_pred             HHHhhCCEEEEEEeCCCCcCHH--HHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHH-hcccCCCCCEE
Confidence            4788999999999999854322  2223333332   3799999999999875432  2333322221 12222457899


Q ss_pred             eecccCCCCHHHHHHHHHHHHhhh
Q 029920          157 GCSAYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       157 ~~Sa~~~~~i~~l~~~l~~~~~~~  180 (185)
                      ++||++|.|++++++++.+.+.+.
T Consensus       347 ~~SA~~g~gv~~l~~~i~~~~~~~  370 (456)
T 4dcu_A          347 FMSALTKKRIHTLMPAIIKASENH  370 (456)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             EEcCCCCcCHHHHHHHHHHHHHHh
Confidence            999999999999999999887543

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.91  E-value=9e-24  Score=160.05  Aligned_cols=135  Identities=22%  Similarity=0.364  Sum_probs=107.7

Q ss_pred             cCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCC----------cccHHHHHHHHHHHHhcccc
Q 029920           46 PTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKMELDNLLKEERL  115 (185)
Q Consensus        46 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~  115 (185)
                      +|.++....+.++++.+++|||+|++.++..|..|+++++++|+|+|+++          ..++.+...++..+......
T Consensus       179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~  258 (353)
T 1cip_A          179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF  258 (353)
T ss_dssp             CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred             ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence            46667777788889999999999999999999999999999999999998          56799999999999887666


Q ss_pred             CCCeEEEEeecCCCCC-----------------CCCHHHHHHhcCcc--ccc---CccceEEEeecccCCCCHHHHHHHH
Q 029920          116 SGASLLILANKQDING-----------------ALTPTEIAKVLNLE--AMD---KTRHWKIVGCSAYTGEGLLEGFDWL  173 (185)
Q Consensus       116 ~~~~~ivv~nK~D~~~-----------------~~~~~~~~~~~~~~--~~~---~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (185)
                      .+.|+++++||+|+..                 ....++........  .+.   ....+++++|||+++.|++++|+++
T Consensus       259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v  338 (353)
T 1cip_A          259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV  338 (353)
T ss_dssp             TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHH
Confidence            7899999999999842                 12233333222110  010   1257889999999999999999999


Q ss_pred             HHHHhhh
Q 029920          174 VQDIASR  180 (185)
Q Consensus       174 ~~~~~~~  180 (185)
                      .+.+.+.
T Consensus       339 ~~~i~~~  345 (353)
T 1cip_A          339 TDVIIKN  345 (353)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988654

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.91  E-value=7.5e-25  Score=169.38  Aligned_cols=154  Identities=18%  Similarity=0.193  Sum_probs=108.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcccc----cCcceEEEEEEEcCe-EEEEEEcCCchhhHHH-------HHhh
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVIS----PTLGFNIKTVTYQKY-TLNIWDVGGQRTIRSY-------WRNY   80 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~----~t~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~-------~~~~   80 (185)
                      ....++|+++|+.|+|||||+++|.+..+....    .|.......+.+.+. .+.+|||||+..+...       ...+
T Consensus        31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~  110 (423)
T 3qq5_A           31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRV  110 (423)
T ss_dssp             -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHH
Confidence            456789999999999999999999998764322    244445556666654 9999999998765432       4567


Q ss_pred             hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecc
Q 029920           81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSA  160 (185)
Q Consensus        81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (185)
                      +..+|++++|+|+....   ....++..+...    +.|+++|+||+|+...... +....+..     ..+.+++++||
T Consensus       111 l~~aD~vllVvD~~~~~---~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~-~~~~~l~~-----~~g~~v~~vSA  177 (423)
T 3qq5_A          111 FYRADCGILVTDSAPTP---YEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAE-ELKGLYES-----RYEAKVLLVSA  177 (423)
T ss_dssp             HTSCSEEEEECSSSCCH---HHHHHHHHHHHT----TCCEEEECCCCTTTTCCCT-HHHHHSSC-----CTTCCCCCCSS
T ss_pred             HhcCCEEEEEEeCCChH---HHHHHHHHHHhc----CCCEEEEEeCcCCCCccHH-HHHHHHHH-----HcCCCEEEEEC
Confidence            88999999999993322   223343433332    7999999999999776554 23333322     24568999999


Q ss_pred             cCCCCHHHHHHHHHHHHhh
Q 029920          161 YTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~~  179 (185)
                      ++|.|+++++++|.+.+.+
T Consensus       178 ktg~gI~eL~~~L~~~l~~  196 (423)
T 3qq5_A          178 LQKKGFDDIGKTISEILPG  196 (423)
T ss_dssp             CCTTSTTTHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHhhhh
Confidence            9999999999999998854

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.91  E-value=1.5e-23  Score=156.78  Aligned_cols=136  Identities=20%  Similarity=0.254  Sum_probs=108.3

Q ss_pred             ccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCC----------CcccHHHHHHHHHHHHhccc
Q 029920           45 SPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSS----------DLRRLDDCKMELDNLLKEER  114 (185)
Q Consensus        45 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~  114 (185)
                      .+|.|+....+..+++.+++|||+|++.++..|..|+++++++|+|+|++          +..++.+...++..+.....
T Consensus       152 ~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~  231 (327)
T 3ohm_A          152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW  231 (327)
T ss_dssp             CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG
T ss_pred             CceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc
Confidence            35777778888889999999999999999999999999999999999654          67789999999999988766


Q ss_pred             cCCCeEEEEeecCCCCCC------------------CCHHHHHHhc----CcccccCccceEEEeecccCCCCHHHHHHH
Q 029920          115 LSGASLLILANKQDINGA------------------LTPTEIAKVL----NLEAMDKTRHWKIVGCSAYTGEGLLEGFDW  172 (185)
Q Consensus       115 ~~~~~~ivv~nK~D~~~~------------------~~~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (185)
                      ..+.|+++++||+|+...                  ...++....+    .....+....+.+++|||+++.||+++|+.
T Consensus       232 ~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~  311 (327)
T 3ohm_A          232 FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAA  311 (327)
T ss_dssp             GTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred             cCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHH
Confidence            678999999999997431                  2233322221    111112235678899999999999999999


Q ss_pred             HHHHHhhh
Q 029920          173 LVQDIASR  180 (185)
Q Consensus       173 l~~~~~~~  180 (185)
                      +.+.+.++
T Consensus       312 v~~~Il~~  319 (327)
T 3ohm_A          312 VKDTILQL  319 (327)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99988764

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.91  E-value=3.3e-24  Score=167.38  Aligned_cols=150  Identities=23%  Similarity=0.335  Sum_probs=101.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEE----EEEEcCeEEEEEEcCCch--------hhHHHHHhhhcC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIK----TVTYQKYTLNIWDVGGQR--------TIRSYWRNYFEQ   83 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~~   83 (185)
                      .++|+++|.+|+|||||+|+|++.......++.+.+..    .+.+++..+.+|||||++        .+...+..+++.
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   82 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE   82 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            37899999999999999999999887766666665433    344467889999999985        566777888999


Q ss_pred             CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccce-EEEeecccC
Q 029920           84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHW-KIVGCSAYT  162 (185)
Q Consensus        84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  162 (185)
                      +|++++|+|+.++.+...  .++...+..   .++|+++|+||+|+.....  +.     .... . .+. +++++||++
T Consensus        83 ad~il~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~~~--~~-----~~~~-~-lg~~~~~~iSA~~  148 (436)
T 2hjg_A           83 ADVIIFMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEMRA--NI-----YDFY-S-LGFGEPYPISGTH  148 (436)
T ss_dssp             CSEEEEEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC-------CC-----CSSG-G-GSSCCCEECBTTT
T ss_pred             CCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccchh--hH-----HHHH-H-cCCCCeEEEeCcC
Confidence            999999999998766543  344454443   3789999999999864311  10     1111 1 222 589999999


Q ss_pred             CCCHHHHHHHHHHHHhh
Q 029920          163 GEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       163 ~~~i~~l~~~l~~~~~~  179 (185)
                      |.|++++++++.+.+.+
T Consensus       149 g~gv~~L~~~i~~~l~~  165 (436)
T 2hjg_A          149 GLGLGDLLDAVAEHFKN  165 (436)
T ss_dssp             TBTHHHHHHHHHHTGGG
T ss_pred             CCChHHHHHHHHHhcCc
Confidence            99999999999988753

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.90  E-value=2.1e-23  Score=162.94  Aligned_cols=159  Identities=21%  Similarity=0.199  Sum_probs=109.6

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcc----eEEEEEEEcCeEEEEEEcCCchhhHHH------------HH
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLG----FNIKTVTYQKYTLNIWDVGGQRTIRSY------------WR   78 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~~~------------~~   78 (185)
                      ..++|+++|++|||||||+|+|.+......++..+    .....+.+++..+.+|||||.......            ..
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~  258 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV  258 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence            45899999999999999999999987644443333    333456778889999999997543321            13


Q ss_pred             hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEE
Q 029920           79 NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIV  156 (185)
Q Consensus        79 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  156 (185)
                      .+++.+|++++|+|+++..+.+..  .+...+..   .++|+++++||+|+.+...  .++....+.. .+......+++
T Consensus       259 ~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  332 (439)
T 1mky_A          259 DSIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFRE-KLYFIDYSPLI  332 (439)
T ss_dssp             HHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHH-HCGGGTTSCEE
T ss_pred             HHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHH-HhccCCCCcEE
Confidence            456789999999999986665542  22333322   3799999999999865432  2223222211 11222456899


Q ss_pred             eecccCCCCHHHHHHHHHHHHhh
Q 029920          157 GCSAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       157 ~~Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                      ++||++|.|++++++.+.+.+.+
T Consensus       333 ~~SA~~g~gv~~l~~~i~~~~~~  355 (439)
T 1mky_A          333 FTSADKGWNIDRMIDAMNLAYAS  355 (439)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999987755

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.90  E-value=1.3e-23  Score=156.58  Aligned_cols=158  Identities=19%  Similarity=0.144  Sum_probs=107.2

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCcccccC----cceEEEEEEEcCeEEEEEEcCCch-hhH--------HHHHhhh
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPT----LGFNIKTVTYQKYTLNIWDVGGQR-TIR--------SYWRNYF   81 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~D~~g~~-~~~--------~~~~~~~   81 (185)
                      +..+|+++|++|+|||||+|+|.+..+...++.    .......+..++.++.++||||+. ...        .....++
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l   86 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI   86 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence            456899999999999999999999876543322    223334456678899999999987 322        2234456


Q ss_pred             cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccc-eEEEeecc
Q 029920           82 EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRH-WKIVGCSA  160 (185)
Q Consensus        82 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa  160 (185)
                      +.+|++++|+|+++   +.....++...+.   ..+.|+++++||+|+...  .......+..  +....+ ..++++||
T Consensus        87 ~~~D~vl~Vvd~~~---~~~~~~~i~~~l~---~~~~P~ilvlNK~D~~~~--~~~~~~~l~~--l~~~~~~~~~i~iSA  156 (301)
T 1ega_A           87 GDVELVIFVVEGTR---WTPDDEMVLNKLR---EGKAPVILAVNKVDNVQE--KADLLPHLQF--LASQMNFLDIVPISA  156 (301)
T ss_dssp             CCEEEEEEEEETTC---CCHHHHHHHHHHH---SSSSCEEEEEESTTTCCC--HHHHHHHHHH--HHTTSCCSEEEECCT
T ss_pred             hcCCEEEEEEeCCC---CCHHHHHHHHHHH---hcCCCEEEEEECcccCcc--HHHHHHHHHH--HHHhcCcCceEEEEC
Confidence            78999999999976   2222233333333   236899999999998752  1222211110  111122 36899999


Q ss_pred             cCCCCHHHHHHHHHHHHhhhcc
Q 029920          161 YTGEGLLEGFDWLVQDIASRIY  182 (185)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~~~~~  182 (185)
                      +++.|++++++.+.+.+.+.-+
T Consensus       157 ~~g~~v~~l~~~i~~~l~~~~~  178 (301)
T 1ega_A          157 ETGLNVDTIAAIVRKHLPEATH  178 (301)
T ss_dssp             TTTTTHHHHHHHHHTTCCBCCC
T ss_pred             CCCCCHHHHHHHHHHhCCcCCC
Confidence            9999999999999987665433

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.90  E-value=1.2e-23  Score=165.62  Aligned_cols=163  Identities=15%  Similarity=0.178  Sum_probs=112.3

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHhCCC----Cc------ccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhh
Q 029920           11 KKKEKEMRILMVGLDNSGKTTIVLKINGED----TS------VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNY   80 (185)
Q Consensus        11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~~----~~------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~   80 (185)
                      ....+.++|+++|++++|||||+++|.+..    ..      ....|.......+.+++..+.+|||||++.+...+..+
T Consensus        14 ~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~   93 (482)
T 1wb1_A           14 HMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSA   93 (482)
T ss_dssp             CCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHH
T ss_pred             hhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHH
Confidence            334567999999999999999999999876    21      11124444444566788999999999999999888999


Q ss_pred             hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCccc-cc-CccceEEEee
Q 029920           81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEA-MD-KTRHWKIVGC  158 (185)
Q Consensus        81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~  158 (185)
                      +..+|++++|+|+++... ....+.+. ++..   .++|.++++||+|+.+....++..+.+.... .. .....+++++
T Consensus        94 ~~~aD~~ilVvda~~g~~-~qt~e~l~-~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~v  168 (482)
T 1wb1_A           94 ADIIDLALIVVDAKEGPK-TQTGEHML-ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI  168 (482)
T ss_dssp             TTSCCEEEEEEETTTCSC-HHHHHHHH-HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEEC
T ss_pred             HhhCCEEEEEEecCCCcc-HHHHHHHH-HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEE
Confidence            999999999999987321 11222222 2222   2688899999999976322222222221100 00 1136789999


Q ss_pred             cccCCCCHHHHHHHHHHHHh
Q 029920          159 SAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      ||++|.|+++++++|.+.+.
T Consensus       169 SA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          169 SAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHHhhc
Confidence            99999999999999998764

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.90  E-value=2.8e-22  Score=155.23  Aligned_cols=160  Identities=18%  Similarity=0.150  Sum_probs=103.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc----cccc--CcceEEEEEEE---------------c--------CeEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS----VISP--TLGFNIKTVTY---------------Q--------KYTLN   63 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~----~~~~--t~~~~~~~~~~---------------~--------~~~~~   63 (185)
                      +...++|+++|+.++|||||+++|.+....    ...+  |..........               .        ...+.
T Consensus         5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   84 (408)
T 1s0u_A            5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS   84 (408)
T ss_dssp             CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence            456799999999999999999999865432    1112  44433322221               1        16899


Q ss_pred             EEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC----HHHHH
Q 029920           64 IWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT----PTEIA  139 (185)
Q Consensus        64 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~----~~~~~  139 (185)
                      +|||||++.+...+...+..+|++++|+|+++........+.+..+ ...  ...|+++++||+|+.+...    .+++.
T Consensus        85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~i~  161 (408)
T 1s0u_A           85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL-EIL--GIDKIIIVQNKIDLVDEKQAEENYEQIK  161 (408)
T ss_dssp             EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH-HHT--TCCCEEEEEECTTSSCTTTTTTHHHHHH
T ss_pred             EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH-HHc--CCCeEEEEEEccCCCCHHHHHHHHHHHH
Confidence            9999999999888888888999999999999643222223333322 211  1358999999999976532    22333


Q ss_pred             HhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      ..+...   .....+++++||++|.|+++++++|.+.+.
T Consensus       162 ~~l~~~---~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          162 EFVKGT---IAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             HHHTTS---TTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             HHHhhc---CCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            333211   114678999999999999999999998764

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.90  E-value=1.7e-22  Score=153.49  Aligned_cols=134  Identities=21%  Similarity=0.309  Sum_probs=98.6

Q ss_pred             CcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCC----------cccHHHHHHHHHHHHhccccC
Q 029920           47 TLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKMELDNLLKEERLS  116 (185)
Q Consensus        47 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~  116 (185)
                      |.++....+.++++.+.+|||+|++.++..|..++++++++|+|+|+++          ..++.+...++..+.......
T Consensus       188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~  267 (362)
T 1zcb_A          188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS  267 (362)
T ss_dssp             CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred             ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence            4556666777889999999999999999999999999999999999999          779999999999998876667


Q ss_pred             CCeEEEEeecCCCCC------------------CCCHHHHHHhc-----CcccccCccceEEEeecccCCCCHHHHHHHH
Q 029920          117 GASLLILANKQDING------------------ALTPTEIAKVL-----NLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL  173 (185)
Q Consensus       117 ~~~~ivv~nK~D~~~------------------~~~~~~~~~~~-----~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (185)
                      +.|+|+++||+|+..                  ....++.....     ..........+.+++|||+++.|++++|+++
T Consensus       268 ~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v  347 (362)
T 1zcb_A          268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDV  347 (362)
T ss_dssp             TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHH
Confidence            899999999999742                  12333333322     1101000246789999999999999999999


Q ss_pred             HHHHhhh
Q 029920          174 VQDIASR  180 (185)
Q Consensus       174 ~~~~~~~  180 (185)
                      .+.+.+.
T Consensus       348 ~~~i~~~  354 (362)
T 1zcb_A          348 KDTILHD  354 (362)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987653

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.90  E-value=1.9e-22  Score=147.42  Aligned_cols=162  Identities=13%  Similarity=0.135  Sum_probs=105.6

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcc--cc---cCcceEEEEEEEcCeEEEEEEcCCchhh-----------HHH
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSV--IS---PTLGFNIKTVTYQKYTLNIWDVGGQRTI-----------RSY   76 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~--~~---~t~~~~~~~~~~~~~~~~~~D~~g~~~~-----------~~~   76 (185)
                      ....++|+|+|++|+|||||+++|.+.....  ..   .|.......+.+++..+.+|||||+..+           ...
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~   98 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC   98 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence            4567999999999999999999999877432  22   2444556667788899999999997543           222


Q ss_pred             HHhhhcCCCEEEEEEeCCCcccH-HHHHHHHHHHHhccccCCCeEEEEee-cCCCCCCCCHHH------------HHHhc
Q 029920           77 WRNYFEQTDGLVWVVDSSDLRRL-DDCKMELDNLLKEERLSGASLLILAN-KQDINGALTPTE------------IAKVL  142 (185)
Q Consensus        77 ~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~ivv~n-K~D~~~~~~~~~------------~~~~~  142 (185)
                      ...+++.+|++++|+|+++.... .....++......  ....|.++++| |+|+... ....            ....+
T Consensus        99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~  175 (260)
T 2xtp_A           99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC  175 (260)
T ss_dssp             HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred             HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence            33467889999999999863222 2222333333221  11345666665 9998754 2222            11111


Q ss_pred             CcccccCccceEEEeecccCCCCHHHHHHHHHHHHhhhc
Q 029920          143 NLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI  181 (185)
Q Consensus       143 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  181 (185)
                      ...    ...+..+++||+++.|++++|++|.+.+.+.-
T Consensus       176 ~~~----~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~  210 (260)
T 2xtp_A          176 GGR----ICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN  210 (260)
T ss_dssp             TTC----EEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCe----EEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence            110    00011288999999999999999999987643

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.89  E-value=3.5e-22  Score=152.13  Aligned_cols=160  Identities=20%  Similarity=0.179  Sum_probs=108.1

Q ss_pred             eeE-EEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCeEEEEEEcCCc---------hhhHHHHHhhhc
Q 029920           16 EMR-ILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKYTLNIWDVGGQ---------RTIRSYWRNYFE   82 (185)
Q Consensus        16 ~~~-i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~---------~~~~~~~~~~~~   82 (185)
                      .++ |+++|++|+|||||+|+|.+....   ....|.+.....+.+++..+.+|||+|.         +.+..... .+.
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~  256 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAK  256 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHH
Confidence            344 999999999999999999988762   2345666667778888899999999996         22333333 568


Q ss_pred             CCCEEEEEEeCCCcc--cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHh---cCcccccCccceEEEe
Q 029920           83 QTDGLVWVVDSSDLR--RLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKV---LNLEAMDKTRHWKIVG  157 (185)
Q Consensus        83 ~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  157 (185)
                      .+|++++|+|++++.  ..... ..+..++......+.|+++|+||+|+.+.. .......   +... .. ....++++
T Consensus       257 ~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~-l~-~~~~~~~~  332 (364)
T 2qtf_A          257 YSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKE-LY-SPIFDVIP  332 (364)
T ss_dssp             GSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHH-HC-SCEEEEEE
T ss_pred             hCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHH-hc-CCCCcEEE
Confidence            899999999999875  33332 333444444344578999999999987643 2211111   0000 00 13457899


Q ss_pred             ecccCCCCHHHHHHHHHHHHhhh
Q 029920          158 CSAYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       158 ~Sa~~~~~i~~l~~~l~~~~~~~  180 (185)
                      +||+++.|+++++++|.+.+...
T Consensus       333 ~SA~~g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          333 ISALKRTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EECCCCcCHHHHHHHHHHHhccc
Confidence            99999999999999999877653

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.89  E-value=1.6e-23  Score=164.36  Aligned_cols=153  Identities=22%  Similarity=0.298  Sum_probs=101.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEE----EEEEcCeEEEEEEcCC--------chhhHHHHHhh
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIK----TVTYQKYTLNIWDVGG--------QRTIRSYWRNY   80 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g--------~~~~~~~~~~~   80 (185)
                      ....++|+++|.+|||||||+|+|.+.......++.+.+..    .+.+.+..+.+|||||        ++.+......+
T Consensus        20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~   99 (456)
T 4dcu_A           20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA   99 (456)
T ss_dssp             ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence            44568999999999999999999999877656555555433    3344568999999999        77778888889


Q ss_pred             hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecc
Q 029920           81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSA  160 (185)
Q Consensus        81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (185)
                      ++.+|++++|+|+.+.-+  ....++...+..   .++|+++|+||+|+.+..  ....+.+.     . ....++++||
T Consensus       100 ~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~~-----l-g~~~~~~iSA  166 (456)
T 4dcu_A          100 MDEADVIIFMVNGREGVT--AADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYS-----L-GFGEPYPISG  166 (456)
T ss_dssp             HHHCSEEEEEEESSSCSC--HHHHHHHHHHTT---CCSCEEEEEECC-----------CCSGG-----G-SSSSEEECCT
T ss_pred             HhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHHH-----c-CCCceEEeec
Confidence            999999999999876433  333445555544   479999999999985431  11111111     1 1113579999


Q ss_pred             cCCCCHHHHHHHHHHHHh
Q 029920          161 YTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~  178 (185)
                      ++|.|++++++.+.+.+.
T Consensus       167 ~~g~gv~~L~~~i~~~l~  184 (456)
T 4dcu_A          167 THGLGLGDLLDAVAEHFK  184 (456)
T ss_dssp             TTCTTHHHHHHHHHTTGG
T ss_pred             ccccchHHHHHHHHhhcc
Confidence            999999999999988764

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.89  E-value=1.4e-22  Score=160.88  Aligned_cols=116  Identities=16%  Similarity=0.187  Sum_probs=89.5

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhC------------------CCCcc-------cccCcceEEEEEEEcCeEEEEEEc
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKING------------------EDTSV-------ISPTLGFNIKTVTYQKYTLNIWDV   67 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~------------------~~~~~-------~~~t~~~~~~~~~~~~~~~~~~D~   67 (185)
                      ..+..+|+++|++|+|||||+++|+.                  .....       ...|.......+.+.+..+++|||
T Consensus        10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDT   89 (528)
T 3tr5_A           10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDT   89 (528)
T ss_dssp             HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECC
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEEC
Confidence            45678999999999999999999961                  11111       123445556677888999999999


Q ss_pred             CCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC
Q 029920           68 GGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL  133 (185)
Q Consensus        68 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~  133 (185)
                      ||+..+......+++.+|++++|+|+++..+..... .+.....    .++|+++++||+|+....
T Consensus        90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~~----~~iPiivviNK~Dl~~~~  150 (528)
T 3tr5_A           90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCRL----RHTPIMTFINKMDRDTRP  150 (528)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHHT----TTCCEEEEEECTTSCCSC
T ss_pred             CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEeCCCCcccc
Confidence            999999999999999999999999999876655433 3333322    379999999999996543

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.89  E-value=2.7e-22  Score=156.52  Aligned_cols=155  Identities=20%  Similarity=0.197  Sum_probs=105.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc----------------------------------ccccCcceEEEEEEEc
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS----------------------------------VISPTLGFNIKTVTYQ   58 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~----------------------------------~~~~t~~~~~~~~~~~   58 (185)
                      .+..++|+++|++|+|||||+++|.+....                                  ....|.......+..+
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~   93 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE   93 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence            456799999999999999999999543210                                  0112444455556778


Q ss_pred             CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCccc---HH---HHHHHHHHHHhccccCCCe-EEEEeecCCCCC
Q 029920           59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRR---LD---DCKMELDNLLKEERLSGAS-LLILANKQDING  131 (185)
Q Consensus        59 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~  131 (185)
                      +..+.+|||||++.+...+..++..+|++++|+|+++...   |.   .....+.....    .+.| +++++||+|+..
T Consensus        94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~  169 (439)
T 3j2k_7           94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPT  169 (439)
T ss_pred             CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCcc
Confidence            8899999999999999999999999999999999998532   11   22222222211    2566 999999999864


Q ss_pred             CCC----HHHHHH----hcCcccccCccceEEEeecccCCCCHHHHHH
Q 029920          132 ALT----PTEIAK----VLNLEAMDKTRHWKIVGCSAYTGEGLLEGFD  171 (185)
Q Consensus       132 ~~~----~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (185)
                      ...    .+++..    .+....+.....++++++||++|.|++++.+
T Consensus       170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            321    111111    1111111111257899999999999999654

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.89  E-value=2.1e-23  Score=163.16  Aligned_cols=152  Identities=16%  Similarity=0.196  Sum_probs=102.0

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEcCeEEEEEEcCCchhhHHHH--------Hhhh
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQKYTLNIWDVGGQRTIRSYW--------RNYF   81 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~   81 (185)
                      +..++|+++|++|+|||||+|+|.+........    |..+....+..++..+.+|||||........        ..++
T Consensus       222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~  301 (462)
T 3geh_A          222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA  301 (462)
T ss_dssp             HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence            356899999999999999999998865432222    2333344567788999999999986654332        2357


Q ss_pred             cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeeccc
Q 029920           82 EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAY  161 (185)
Q Consensus        82 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (185)
                      ..+|++++|+|++++.+... ..++..+      .+.|+++|+||+|+.......    ...  .+.  ...+++++||+
T Consensus       302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~----~~~--~~~--~~~~~i~iSAk  366 (462)
T 3geh_A          302 NTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT----SLE--YPE--NITQIVHTAAA  366 (462)
T ss_dssp             CSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST----TCC--CCT--TCCCEEEEBTT
T ss_pred             hcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH----HHH--Hhc--cCCcEEEEECC
Confidence            88999999999998766554 2222222      247999999999986542221    111  111  34579999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh
Q 029920          162 TGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~~  180 (185)
                      +|.|+++++++|.+.+...
T Consensus       367 tg~Gi~eL~~~i~~~~~~~  385 (462)
T 3geh_A          367 QKQGIDSLETAILEIVQTG  385 (462)
T ss_dssp             TTBSHHHHHHHHHHHHTTS
T ss_pred             CCCCHHHHHHHHHHHHhcc
Confidence            9999999999999988654

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.89  E-value=9.2e-23  Score=153.08  Aligned_cols=134  Identities=22%  Similarity=0.309  Sum_probs=106.0

Q ss_pred             cCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCC----------CcccHHHHHHHHHHHHhcccc
Q 029920           46 PTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSS----------DLRRLDDCKMELDNLLKEERL  115 (185)
Q Consensus        46 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~  115 (185)
                      +|.|+....+..+++.+++||++|++.++..|..|+++++++|+|+|++          +..++.+...++..+......
T Consensus       147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~  226 (340)
T 4fid_A          147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL  226 (340)
T ss_dssp             CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred             ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence            4667777788888999999999999999999999999999999999998          678999999999999887666


Q ss_pred             CCCeEEEEeecCCCCCC-----------------CCHHHHHHhcCccc----------ccCc-----------cceEEEe
Q 029920          116 SGASLLILANKQDINGA-----------------LTPTEIAKVLNLEA----------MDKT-----------RHWKIVG  157 (185)
Q Consensus       116 ~~~~~ivv~nK~D~~~~-----------------~~~~~~~~~~~~~~----------~~~~-----------~~~~~~~  157 (185)
                      .+.|+++++||+|+...                 ...++....+....          ....           +.+.+++
T Consensus       227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~  306 (340)
T 4fid_A          227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP  306 (340)
T ss_dssp             TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred             CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence            78999999999997431                 11222211111100          0111           3578999


Q ss_pred             ecccCCCCHHHHHHHHHHHHhh
Q 029920          158 CSAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       158 ~Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                      |||++..|++.+|+.+.+.+.+
T Consensus       307 TsA~dt~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          307 TNATDGSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             ECTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEeeCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999998765

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.89  E-value=7.6e-23  Score=156.19  Aligned_cols=146  Identities=10%  Similarity=0.058  Sum_probs=108.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR   97 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   97 (185)
                      +|+++|++++|||||+++|.     ....|.......+..++..+.+|||||++++.......+..+|++++|+| ++ .
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g   95 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-G   95 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-C
T ss_pred             EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-C
Confidence            99999999999999999998     34455666666677788899999999999998888888899999999999 54 3


Q ss_pred             cHHHHHHHHHHHHhccccCCCeE-EEEee-cCCCCCCCCHH----HHHHhcCcccccCccceEEEe--ecccC---CCCH
Q 029920           98 RLDDCKMELDNLLKEERLSGASL-LILAN-KQDINGALTPT----EIAKVLNLEAMDKTRHWKIVG--CSAYT---GEGL  166 (185)
Q Consensus        98 s~~~~~~~~~~~~~~~~~~~~~~-ivv~n-K~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~Sa~~---~~~i  166 (185)
                      .+....+++.....    .+.|. ++++| |+|+ +....+    ++.+.+...   ....+++++  +||++   +.|+
T Consensus        96 ~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~---~~~~~~ii~~~~SA~~~~~g~gi  167 (370)
T 2elf_A           96 LDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT---VLQDWECISLNTNKSAKNPFEGV  167 (370)
T ss_dssp             CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS---TTTTCEEEECCCCTTSSSTTTTH
T ss_pred             CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc---CCCceEEEecccccccCcCCCCH
Confidence            34444444443322    25676 89999 9999 432212    222222211   113579999  99999   9999


Q ss_pred             HHHHHHHHHHHh
Q 029920          167 LEGFDWLVQDIA  178 (185)
Q Consensus       167 ~~l~~~l~~~~~  178 (185)
                      +++++.|.+.+.
T Consensus       168 ~~L~~~l~~~~~  179 (370)
T 2elf_A          168 DELKARINEVAE  179 (370)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcc
Confidence            999999988764

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.89  E-value=2e-22  Score=156.18  Aligned_cols=161  Identities=17%  Similarity=0.183  Sum_probs=110.5

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCc----cccc--CcceEEEEEEEc-----------------------CeEE
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS----VISP--TLGFNIKTVTYQ-----------------------KYTL   62 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~----~~~~--t~~~~~~~~~~~-----------------------~~~~   62 (185)
                      .....++|+++|+.++|||||+++|.+....    ...+  |.........+.                       ...+
T Consensus         6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   85 (410)
T 1kk1_A            6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   85 (410)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence            3566799999999999999999999865432    1122  444333332220                       1689


Q ss_pred             EEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH----HHH
Q 029920           63 NIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP----TEI  138 (185)
Q Consensus        63 ~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~----~~~  138 (185)
                      .+|||||++.+.......+..+|++++|+|+++........+.+..+ ...  ...|+++++||+|+.+....    +++
T Consensus        86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~~--~~~~iivviNK~Dl~~~~~~~~~~~~i  162 (410)
T 1kk1_A           86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL-QII--GQKNIIIAQNKIELVDKEKALENYRQI  162 (410)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH-HHH--TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEECccCCCHHHHHHHHHHH
Confidence            99999999999888888888999999999999643122222323222 211  13589999999998764321    122


Q ss_pred             HHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          139 AKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      ...+...   .....+++++||++|.|+++++++|.+.+.
T Consensus       163 ~~~l~~~---~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          163 KEFIEGT---VAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHHHTTS---TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHhc---CcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            2222211   114678999999999999999999998664

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.89  E-value=1.4e-24  Score=171.91  Aligned_cols=160  Identities=16%  Similarity=0.126  Sum_probs=111.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCccc---ccCcceEEEEEEE-cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVI---SPTLGFNIKTVTY-QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~---~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      +++++|+++|++|+|||||+++|.+..+...   ..|..+....+.. ++..+.+|||||++.|..++..++..+|++++
T Consensus         2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            3578999999999999999999987554211   1122222222333 44689999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH--HHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP--TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      |+|+++....+. ...+....    ..+.|+++++||+|+......  ..................+++++||++|.|++
T Consensus        82 VVDa~dg~~~qt-~e~l~~~~----~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~  156 (537)
T 3izy_P           82 VVAADDGVMKQT-VESIQHAK----DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM  156 (537)
T ss_dssp             ECBSSSCCCHHH-HHHHHHHH----TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred             EEECCCCccHHH-HHHHHHHH----HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence            999998655443 23333332    237899999999998643221  11111111111111135789999999999999


Q ss_pred             HHHHHHHHHHh
Q 029920          168 EGFDWLVQDIA  178 (185)
Q Consensus       168 ~l~~~l~~~~~  178 (185)
                      ++++++...+.
T Consensus       157 eLle~I~~l~~  167 (537)
T 3izy_P          157 ALAEATIALAE  167 (537)
T ss_dssp             HHHHHHHHHHT
T ss_pred             hHHHHHHHhhh
Confidence            99999988764

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.88  E-value=8.4e-23  Score=161.23  Aligned_cols=157  Identities=19%  Similarity=0.125  Sum_probs=104.1

Q ss_pred             HhhccCceeEEEEEcCCCCChHHHHHHHhCCCCc----------------------------------ccccCcceEEEE
Q 029920            9 KIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTS----------------------------------VISPTLGFNIKT   54 (185)
Q Consensus         9 ~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~----------------------------------~~~~t~~~~~~~   54 (185)
                      ........++|+++|++|+|||||+++|++....                                  ....|.......
T Consensus        26 ~l~~~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~  105 (483)
T 3p26_A           26 FVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSH  105 (483)
T ss_dssp             HHHHSCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEE
T ss_pred             HHhcCCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEE
Confidence            3344677899999999999999999999654110                                  012244445556


Q ss_pred             EEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHH-----HHHHHHHHHhccccCCCeEEEEeecCCC
Q 029920           55 VTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDD-----CKMELDNLLKEERLSGASLLILANKQDI  129 (185)
Q Consensus        55 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~~~~ivv~nK~D~  129 (185)
                      +...+..+.+|||||++.+...+..++..+|++++|+|+++..++..     .......+....  ...|+++|+||+|+
T Consensus       106 ~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl  183 (483)
T 3p26_A          106 FSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDN  183 (483)
T ss_dssp             EECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGG
T ss_pred             EecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCc
Confidence            67788999999999999999999999999999999999998644322     111112222221  23569999999998


Q ss_pred             CCCCC--HHHHHHhcCc----ccccCccceEEEeecccCCCCHHH
Q 029920          130 NGALT--PTEIAKVLNL----EAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus       130 ~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      .+...  .+++...+..    ..+ ....++++++||++|.|+++
T Consensus       184 ~~~~~~~~~~i~~~~~~~l~~~g~-~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          184 VDWSQQRFEEIKSKLLPYLVDIGF-FEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             GTTCHHHHHHHHHHHHHHHHHHTC-CGGGEEEEECCSSSCTTSSS
T ss_pred             ccchHHHHHHHHHHHHHHHHHcCC-CcccceEEEEeeecCCCccc
Confidence            76321  1122222111    111 11368999999999999975

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.88  E-value=4e-23  Score=144.36  Aligned_cols=130  Identities=23%  Similarity=0.364  Sum_probs=96.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcC----CCEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQ----TDGLV   88 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~----~d~~i   88 (185)
                      ....++|+++|++|||||||+++|.+..+.....+...+. ...+....+.+|||||++.+...+..++..    +|+++
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i  123 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI  123 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCce-eeeecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEE
Confidence            4567899999999999999999999887643211111111 012256789999999998877666666655    89999


Q ss_pred             EEEeCC-CcccHHHHHHHHHHHHhccc---cCCCeEEEEeecCCCCCCCCHHHHHHhcC
Q 029920           89 WVVDSS-DLRRLDDCKMELDNLLKEER---LSGASLLILANKQDINGALTPTEIAKVLN  143 (185)
Q Consensus        89 ~v~d~~-~~~s~~~~~~~~~~~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~  143 (185)
                      +|+|++ ++.++.....++..++....   ..+.|+++|+||+|+.+.....++...+.
T Consensus       124 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~  182 (193)
T 2ged_A          124 FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALE  182 (193)
T ss_dssp             EEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred             EEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHH
Confidence            999999 88899998888888876532   25799999999999987777666655543

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.88  E-value=8.7e-22  Score=142.27  Aligned_cols=168  Identities=12%  Similarity=0.119  Sum_probs=101.4

Q ss_pred             hhccCceeEEEEEcCCCCChHHHHHHHhCCCCccc-----ccCcceEEEEEEEcCeEEEEEEcCCc-----------hhh
Q 029920           10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVI-----SPTLGFNIKTVTYQKYTLNIWDVGGQ-----------RTI   73 (185)
Q Consensus        10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~D~~g~-----------~~~   73 (185)
                      .......++|+++|++|+|||||+|+|++..+...     ..|.......+.+++..+.+|||||.           ..+
T Consensus        23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~  102 (239)
T 3lxx_A           23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEI  102 (239)
T ss_dssp             -----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHH
T ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHH
Confidence            33456789999999999999999999999877422     23444566677888899999999993           334


Q ss_pred             HHHHHhhhcCCCEEEEEEeCCCcccH-HHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcC--cccccCc
Q 029920           74 RSYWRNYFEQTDGLVWVVDSSDLRRL-DDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLN--LEAMDKT  150 (185)
Q Consensus        74 ~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~--~~~~~~~  150 (185)
                      ......+.+.+|++++|+|+++.... .....++...+..  ....|+++|+||+|+.......+......  ...+...
T Consensus       103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~--~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~  180 (239)
T 3lxx_A          103 IRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGE--RARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI  180 (239)
T ss_dssp             HHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHH--HHGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhh--hccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence            44555556788999999999764332 1222222222221  12468999999999865433321111100  0011111


Q ss_pred             cceEEEeecccC-----CCCHHHHHHHHHHHHhh
Q 029920          151 RHWKIVGCSAYT-----GEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       151 ~~~~~~~~Sa~~-----~~~i~~l~~~l~~~~~~  179 (185)
                      ++..++.+++..     +.++.++++.+.+.+.+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            333455555543     36899999998887755

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.88  E-value=4.6e-22  Score=159.57  Aligned_cols=158  Identities=22%  Similarity=0.253  Sum_probs=105.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCC--Cc------ccc------cCcceE----EEEEEEc-----CeEEEEEEcCCc
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGED--TS------VIS------PTLGFN----IKTVTYQ-----KYTLNIWDVGGQ   70 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~--~~------~~~------~t~~~~----~~~~~~~-----~~~~~~~D~~g~   70 (185)
                      ++..+|+++|+.++|||||+++|....  ..      ...      .+.+.+    ...+.+.     .+.+++|||||+
T Consensus         2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh   81 (599)
T 3cb4_D            2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH   81 (599)
T ss_dssp             TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence            356799999999999999999997521  10      011      112222    2233443     378999999999


Q ss_pred             hhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCc
Q 029920           71 RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKT  150 (185)
Q Consensus        71 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  150 (185)
                      ..|...+..++..+|++++|+|+++..+.+....|... ..    .++|+++++||+|+.... ..+....+... + ..
T Consensus        82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~-~~----~~ipiIvViNKiDl~~a~-~~~v~~ei~~~-l-g~  153 (599)
T 3cb4_D           82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTA-ME----MDLEVVPVLNKIDLPAAD-PERVAEEIEDI-V-GI  153 (599)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHH-HH----TTCEEEEEEECTTSTTCC-HHHHHHHHHHH-T-CC
T ss_pred             hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH-HH----CCCCEEEeeeccCccccc-HHHHHHHHHHH-h-CC
Confidence            99999999999999999999999987666655444333 22    378999999999997654 32222222111 0 00


Q ss_pred             cceEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920          151 RHWKIVGCSAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       151 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                      ...+++++||++|.|++++++++.+.+..
T Consensus       154 ~~~~vi~vSAktg~GI~~Ll~~I~~~lp~  182 (599)
T 3cb4_D          154 DATDAVRCSAKTGVGVQDVLERLVRDIPP  182 (599)
T ss_dssp             CCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred             CcceEEEeecccCCCchhHHHHHhhcCCC
Confidence            12247999999999999999999988753

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.88  E-value=6e-22  Score=158.71  Aligned_cols=159  Identities=16%  Similarity=0.174  Sum_probs=108.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCC--Cc------ccc----------cCcceEEEEEEEc-----CeEEEEEEcCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGED--TS------VIS----------PTLGFNIKTVTYQ-----KYTLNIWDVGG   69 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~--~~------~~~----------~t~~~~~~~~~~~-----~~~~~~~D~~g   69 (185)
                      .++..+|+++|+.++|||||+++|+...  ..      ...          .|.......+.+.     .+.+++|||||
T Consensus         3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG   82 (600)
T 2ywe_A            3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG   82 (600)
T ss_dssp             GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence            3467899999999999999999996521  10      011          1111111223332     27899999999


Q ss_pred             chhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccC
Q 029920           70 QRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDK  149 (185)
Q Consensus        70 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~  149 (185)
                      +..|...+..++..+|++++|+|+++..+.+....|... ..    .+.|+++++||+|+.... ..+....+....  .
T Consensus        83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a-~~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~l--g  154 (600)
T 2ywe_A           83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKA-VE----QDLVIIPVINKIDLPSAD-VDRVKKQIEEVL--G  154 (600)
T ss_dssp             SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHH-HH----TTCEEEEEEECTTSTTCC-HHHHHHHHHHTS--C
T ss_pred             cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHH-HH----CCCCEEEEEeccCccccC-HHHHHHHHHHhh--C
Confidence            999999999999999999999999998776665544333 22    379999999999997653 333222221110  1


Q ss_pred             ccceEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920          150 TRHWKIVGCSAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       150 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                      ....+++++||++|.|+++++++|.+.+..
T Consensus       155 ~~~~~vi~vSAktg~GI~~Lle~I~~~lp~  184 (600)
T 2ywe_A          155 LDPEEAILASAKEGIGIEEILEAIVNRIPP  184 (600)
T ss_dssp             CCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             CCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence            112248999999999999999999988753

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.87  E-value=2.7e-22  Score=155.22  Aligned_cols=162  Identities=17%  Similarity=0.131  Sum_probs=110.8

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHhCC--------CCcc------------cccCcceEEEEEEEcCeEEEEEEcCCc
Q 029920           11 KKKEKEMRILMVGLDNSGKTTIVLKINGE--------DTSV------------ISPTLGFNIKTVTYQKYTLNIWDVGGQ   70 (185)
Q Consensus        11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~--------~~~~------------~~~t~~~~~~~~~~~~~~~~~~D~~g~   70 (185)
                      .+....++|+++|++|+|||||+++|.+.        .+..            ...|.......+...+..+.+|||||+
T Consensus         6 ~~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~   85 (405)
T 2c78_A            6 VRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGH   85 (405)
T ss_dssp             ---CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCS
T ss_pred             cCCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCCh
Confidence            34567899999999999999999999862        1111            112344444455667789999999999


Q ss_pred             hhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEeecCCCCCCCC-HH----HHHHhcCc
Q 029920           71 RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS-LLILANKQDINGALT-PT----EIAKVLNL  144 (185)
Q Consensus        71 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~-~~----~~~~~~~~  144 (185)
                      +.+...+..++..+|++++|+|+++.... ....++.....    .+.| +++++||+|+..... .+    ++...+..
T Consensus        86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~  160 (405)
T 2c78_A           86 ADYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQ  160 (405)
T ss_dssp             GGGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHH
Confidence            99998888999999999999999986543 33444443322    2677 899999999975211 11    11121111


Q ss_pred             ccccCccceEEEeecccCCCC------------------HHHHHHHHHHHHh
Q 029920          145 EAMDKTRHWKIVGCSAYTGEG------------------LLEGFDWLVQDIA  178 (185)
Q Consensus       145 ~~~~~~~~~~~~~~Sa~~~~~------------------i~~l~~~l~~~~~  178 (185)
                      ..+.. ...+++++||++|.|                  ++++++.|.+.+.
T Consensus       161 ~~~~~-~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          161 YEFPG-DEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             TTSCT-TTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             hcccc-cCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence            11111 246899999999987                  7788888777653

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.87  E-value=2.2e-22  Score=152.43  Aligned_cols=123  Identities=22%  Similarity=0.323  Sum_probs=92.7

Q ss_pred             cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCC----------CcccHHHHHHHHHHHHhccccCCCeEEEEeecC
Q 029920           58 QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSS----------DLRRLDDCKMELDNLLKEERLSGASLLILANKQ  127 (185)
Q Consensus        58 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~  127 (185)
                      ..+.+++|||+|++.++..+..|+++++++|+|+|++          +..++++...++..+.......+.|+++++||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            3478999999999999999999999999999999998          788999999999998876555789999999999


Q ss_pred             CCCCCC----C-------------------HHHHHHhcCccc--c------c--CccceEEEeecccCCCCHHHHHHHHH
Q 029920          128 DINGAL----T-------------------PTEIAKVLNLEA--M------D--KTRHWKIVGCSAYTGEGLLEGFDWLV  174 (185)
Q Consensus       128 D~~~~~----~-------------------~~~~~~~~~~~~--~------~--~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (185)
                      |+....    .                   .++.........  .      .  ....+.+++|||+++.||+++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            973210    0                   111111111100  0      0  01346679999999999999999999


Q ss_pred             HHHhhh
Q 029920          175 QDIASR  180 (185)
Q Consensus       175 ~~~~~~  180 (185)
                      +.+.+.
T Consensus       341 ~~I~~~  346 (354)
T 2xtz_A          341 ETLRRR  346 (354)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887653

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.87  E-value=7.9e-23  Score=159.47  Aligned_cols=156  Identities=17%  Similarity=0.241  Sum_probs=101.6

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC--CCcc--------------------------------cccCcceEEEEEEEc
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE--DTSV--------------------------------ISPTLGFNIKTVTYQ   58 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~   58 (185)
                      .+..++|+++|++|+|||||+++|++.  .+..                                ...|.......+...
T Consensus         3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~   82 (435)
T 1jny_A            3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK   82 (435)
T ss_dssp             -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred             CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence            456799999999999999999999753  2210                                112344444456677


Q ss_pred             CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHH---HHHHHhccccCC-CeEEEEeecCCCCCCC-
Q 029920           59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKME---LDNLLKEERLSG-ASLLILANKQDINGAL-  133 (185)
Q Consensus        59 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~---~~~~~~~~~~~~-~~~ivv~nK~D~~~~~-  133 (185)
                      +..+.+|||||++.+...+..++..+|++++|+|+++ .+|+....+   ....+......+ .|+++++||+|+.+.. 
T Consensus        83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~  161 (435)
T 1jny_A           83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY  161 (435)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred             CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence            8899999999999999999999999999999999998 566643221   111111111123 4699999999997632 


Q ss_pred             CH---HH----HHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920          134 TP---TE----IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF  170 (185)
Q Consensus       134 ~~---~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (185)
                      ..   +.    +...+....+.. ..++++++||++|.|+.+++
T Consensus       162 ~~~~~~~~~~~i~~~~~~~~~~~-~~~~~i~iSA~~g~~v~e~~  204 (435)
T 1jny_A          162 DEKRYKEIVDQVSKFMRSYGFNT-NKVRFVPVVAPSGDNITHKS  204 (435)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCC-TTCEEEECBTTTTBTTTBCC
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCc-CCceEEEeecccCccccccc
Confidence            11   11    222211111111 24789999999999997543

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.87  E-value=5.7e-24  Score=167.15  Aligned_cols=157  Identities=18%  Similarity=0.161  Sum_probs=106.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCccc---ccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVI---SPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      .++++|+++|++++|||||+++|.+..+...   ..|.......+.+++..+.+|||||++.|..++..++..+|++++|
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV   81 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV   81 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence            4678999999999999999999976433211   1122222223445667899999999999998888889999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcc-cccC--ccceEEEeecccCCCCHH
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLE-AMDK--TRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~Sa~~~~~i~  167 (185)
                      +|+++....+ ....+...    ...+.|+++++||+|+..... +++...+... ....  ....+++++||++|.|++
T Consensus        82 Vda~~g~~~q-T~e~l~~~----~~~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~  155 (501)
T 1zo1_I           82 VAADDGVMPQ-TIEAIQHA----KAAQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID  155 (501)
T ss_dssp             EETTTBSCTT-THHHHHHH----HHTTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred             eecccCccHH-HHHHHHHH----HhcCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence            9998832211 11222222    123789999999999965321 1222222111 1111  124789999999999999


Q ss_pred             HHHHHHHHH
Q 029920          168 EGFDWLVQD  176 (185)
Q Consensus       168 ~l~~~l~~~  176 (185)
                      ++++++...
T Consensus       156 eLle~I~~~  164 (501)
T 1zo1_I          156 ELLDAILLQ  164 (501)
T ss_dssp             THHHHTTTT
T ss_pred             hhhhhhhhh
Confidence            999998653

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.87  E-value=3.6e-22  Score=154.14  Aligned_cols=158  Identities=17%  Similarity=0.090  Sum_probs=107.3

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCC-------CCc------------ccccCcceEEEEEEEcCeEEEEEEcCCchhhHH
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGE-------DTS------------VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRS   75 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~-------~~~------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~   75 (185)
                      ..++|+++|++++|||||+++|.+.       .+.            ....|.......+...+..+.+|||||++.+..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            4689999999999999999999763       111            011122233333455678999999999999988


Q ss_pred             HHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEeecCCCCCCCCH-H----HHHHhcCcccccC
Q 029920           76 YWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS-LLILANKQDINGALTP-T----EIAKVLNLEAMDK  149 (185)
Q Consensus        76 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~-~----~~~~~~~~~~~~~  149 (185)
                      .+..++..+|++++|+|+++....+ ..+.+... ..   .++| +++++||+|+.+.... +    ++.+.+....+..
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~~~-~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~  156 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQ-TREHLLLA-RQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG  156 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHH-HH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHH-HHHHHHHH-HH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence            8888999999999999999854333 33333222 22   2678 7899999998752111 1    1222221111111


Q ss_pred             ccceEEEeecccCCCC----------HHHHHHHHHHHHh
Q 029920          150 TRHWKIVGCSAYTGEG----------LLEGFDWLVQDIA  178 (185)
Q Consensus       150 ~~~~~~~~~Sa~~~~~----------i~~l~~~l~~~~~  178 (185)
                       ..++++++||++|.|          ++++++.|.+.+.
T Consensus       157 -~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          157 -EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             -TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             -ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence             246899999999775          8899999888664

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.87  E-value=4e-22  Score=160.01  Aligned_cols=157  Identities=21%  Similarity=0.222  Sum_probs=107.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcc-----cccCcceEEEEEE----------------EcCeEEEEEEcCCchh
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSV-----ISPTLGFNIKTVT----------------YQKYTLNIWDVGGQRT   72 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~-----~~~t~~~~~~~~~----------------~~~~~~~~~D~~g~~~   72 (185)
                      .+.++|+++|++|+|||||+++|.+..+..     .+++.+.......                +....+.+|||||++.
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            357899999999999999999998754432     2223333322211                1112699999999999


Q ss_pred             hHHHHHhhhcCCCEEEEEEeCCC---cccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH--------------
Q 029920           73 IRSYWRNYFEQTDGLVWVVDSSD---LRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP--------------  135 (185)
Q Consensus        73 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~--------------  135 (185)
                      |..++..++..+|++++|+|+++   +++++.+.    .+ .   ..+.|+++++||+|+......              
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l-~---~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~  154 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----IL-R---MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD  154 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HH-H---HTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HH-H---HcCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence            99888888899999999999998   44544322    22 1   237899999999998642110              


Q ss_pred             H-----------HHHHhcCcccc---------cCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          136 T-----------EIAKVLNLEAM---------DKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       136 ~-----------~~~~~~~~~~~---------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      .           ++...+....+         .....++++++||++|.|+++++++|...+.
T Consensus       155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence            1           11111111000         0124578999999999999999999998765

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.87  E-value=2.6e-21  Score=150.93  Aligned_cols=153  Identities=16%  Similarity=0.144  Sum_probs=102.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcc------------------------------------cccCcceEEEEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSV------------------------------------ISPTLGFNIKTVT   56 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~------------------------------------~~~t~~~~~~~~~   56 (185)
                      .+..++|+++|++|+|||||+++|++.....                                    ..-|.......+.
T Consensus        21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~  100 (434)
T 1zun_B           21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS  100 (434)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence            3456899999999999999999997543100                                    0112333444556


Q ss_pred             EcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH-
Q 029920           57 YQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP-  135 (185)
Q Consensus        57 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-  135 (185)
                      ..+..+.+|||||++.+...+..++..+|++++|+|+++.... ....++... ...  ...|+++|+||+|+.+.... 
T Consensus       101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~-~~~--~~~~iIvviNK~Dl~~~~~~~  176 (434)
T 1zun_B          101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIA-SLL--GIKHIVVAINKMDLNGFDERV  176 (434)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHH-HHT--TCCEEEEEEECTTTTTSCHHH
T ss_pred             cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHH-HHc--CCCeEEEEEEcCcCCcccHHH
Confidence            6788999999999999998888899999999999999986432 233333322 221  12469999999999763211 


Q ss_pred             -HHHHHhcCcc--ccc-CccceEEEeecccCCCCHHHH
Q 029920          136 -TEIAKVLNLE--AMD-KTRHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus       136 -~~~~~~~~~~--~~~-~~~~~~~~~~Sa~~~~~i~~l  169 (185)
                       .+....+...  ... ....++++++||++|.|++++
T Consensus       177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence             1111111110  010 013578999999999999874

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.87  E-value=2.4e-22  Score=162.12  Aligned_cols=153  Identities=20%  Similarity=0.152  Sum_probs=104.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcc----------------------------------cccCcceEEEEEEEc
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSV----------------------------------ISPTLGFNIKTVTYQ   58 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~----------------------------------~~~t~~~~~~~~~~~   58 (185)
                      ....++|+++|++|+|||||+++|++.....                                  .+.|.......+...
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~  243 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  243 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence            4567999999999999999999998653321                                  122444455566778


Q ss_pred             CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc---cH---HHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR---RL---DDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        59 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      +..+.+|||||++.+...+..++..+|++|+|+|+++..   ++   ......+. .....  ...|+++|+||+|+.+.
T Consensus       244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~-~~~~l--gi~~iIVVvNKiDl~~~  320 (611)
T 3izq_1          244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHML-LASSL--GIHNLIIAMNKMDNVDW  320 (611)
T ss_dssp             SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHH-HHHTT--TCCEEEEEEECTTTTTT
T ss_pred             CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHH-HHHHc--CCCeEEEEEecccccch
Confidence            889999999999999999999999999999999998732   11   11122111 12211  13569999999999763


Q ss_pred             CC--HHHHHHhc----CcccccCccceEEEeecccCCCCHHHH
Q 029920          133 LT--PTEIAKVL----NLEAMDKTRHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus       133 ~~--~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (185)
                      ..  .+++...+    ....+. ...++++++||++|.|++++
T Consensus       321 ~~~~~~ei~~~l~~~l~~~g~~-~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          321 SQQRFEEIKSKLLPYLVDIGFF-EDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCC-GGGCEEEECCTTTCTTTSSC
T ss_pred             hHHHHHHHHHHHHHHHHhhccc-ccCccEEeeecccCCCcccc
Confidence            21  11112111    111111 13578999999999999865

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.87  E-value=2.4e-21  Score=144.15  Aligned_cols=156  Identities=15%  Similarity=0.155  Sum_probs=101.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCc-----ccccCcce--------------------------------------
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-----VISPTLGF--------------------------------------   50 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-----~~~~t~~~--------------------------------------   50 (185)
                      ...++|+|+|.+|+|||||+|+|.+..+.     ..+...+.                                      
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            45689999999999999999999998763     11111110                                      


Q ss_pred             ------------EEEEEEEcCeEEEEEEcCCch-------------hhHHHHHhhhcCCCEEE-EEEeCCCcccHHHHHH
Q 029920           51 ------------NIKTVTYQKYTLNIWDVGGQR-------------TIRSYWRNYFEQTDGLV-WVVDSSDLRRLDDCKM  104 (185)
Q Consensus        51 ------------~~~~~~~~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~  104 (185)
                                  .......+...+.+|||||..             .+......+++.++.++ +|+|+++..+......
T Consensus       104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~  183 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  183 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred             cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence                        000001113689999999963             35567778888888776 6999987544333222


Q ss_pred             HHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCc-cceEEEeecccCCCCHHHHHHHHHHH
Q 029920          105 ELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKT-RHWKIVGCSAYTGEGLLEGFDWLVQD  176 (185)
Q Consensus       105 ~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~l~~~l~~~  176 (185)
                      ++..+    ...+.|+++|+||+|+.+... ..+..   ........ ...+++++||++|.|++++++++.+.
T Consensus       184 ~~~~~----~~~~~~~i~V~NK~Dl~~~~~~~~~~~---~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          184 IAKEV----DPQGQRTIGVITKLDLMDEGTDARDVL---ENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             HHHHH----CTTCSSEEEEEECGGGSCTTCCCHHHH---TTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             HHHHh----CCCCCeEEEEEEccccCCCCchHHHHH---hCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            22222    223689999999999865433 22221   11111111 23478999999999999999998763

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.86  E-value=5.6e-22  Score=151.93  Aligned_cols=134  Identities=23%  Similarity=0.282  Sum_probs=101.9

Q ss_pred             CcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCC----------cccHHHHHHHHHHHHhccccC
Q 029920           47 TLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKMELDNLLKEERLS  116 (185)
Q Consensus        47 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~  116 (185)
                      |.|+....+.++++.+++|||+|++.++..|..|+++++++|+|||+++          ..+|..+..|+..+.......
T Consensus       204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~  283 (402)
T 1azs_C          204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR  283 (402)
T ss_dssp             CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred             eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence            3444555667788999999999999999999999999999999999999          889999999999998765556


Q ss_pred             CCeEEEEeecCCCCCC-----C------------------------C---HHHHHHhcCcc--cc-----cCccceEEEe
Q 029920          117 GASLLILANKQDINGA-----L------------------------T---PTEIAKVLNLE--AM-----DKTRHWKIVG  157 (185)
Q Consensus       117 ~~~~ivv~nK~D~~~~-----~------------------------~---~~~~~~~~~~~--~~-----~~~~~~~~~~  157 (185)
                      +.|+++++||+|+...     .                        .   .++........  ..     .....+.+++
T Consensus       284 ~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~  363 (402)
T 1azs_C          284 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF  363 (402)
T ss_dssp             SCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEE
T ss_pred             CCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEE
Confidence            8999999999997321     0                        0   01111110000  00     0113577899


Q ss_pred             ecccCCCCHHHHHHHHHHHHhhh
Q 029920          158 CSAYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       158 ~Sa~~~~~i~~l~~~l~~~~~~~  180 (185)
                      |||+++.||+++|+++.+.+.+.
T Consensus       364 TSA~d~~nV~~vF~~v~~~I~~~  386 (402)
T 1azs_C          364 TCAVDTENIRRVFNDCRDIIQRM  386 (402)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecCcCHHHHHHHHHHHHHHH
Confidence            99999999999999998887653

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.86  E-value=1.2e-21  Score=144.26  Aligned_cols=158  Identities=16%  Similarity=0.161  Sum_probs=87.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcc--c-------ccCcceEEEEEEE--cC--eEEEEEEcCCch-------h
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSV--I-------SPTLGFNIKTVTY--QK--YTLNIWDVGGQR-------T   72 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~--~-------~~t~~~~~~~~~~--~~--~~~~~~D~~g~~-------~   72 (185)
                      +...++|+++|.+|+|||||+|+|++.....  .       .+|.+........  ++  ..+.+|||||..       .
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence            4457999999999999999999988766532  2       4555544444333  33  589999999962       2


Q ss_pred             hHHHH-------HhhhcC-------------CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           73 IRSYW-------RNYFEQ-------------TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        73 ~~~~~-------~~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      +....       ..++..             +|+++++++.++.. +......+...+..    ++|+++|+||+|+...
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~-~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~  159 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRLHE----KVNIIPLIAKADTLTP  159 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-CCHHHHHHHHHHTT----TSCEEEEESSGGGSCH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-CCHHHHHHHHHHhc----cCCEEEEEeccCCCCH
Confidence            33332       334433             78999999776522 22222222333332    6999999999998654


Q ss_pred             CCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHH
Q 029920          133 LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (185)
                      .........+.. .+. ..+++++.+||+++.|+++++++|.+.+
T Consensus       160 ~e~~~~~~~i~~-~l~-~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          160 EECQQFKKQIMK-EIQ-EHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHH-HHH-HTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHH-HHH-HcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            333222222211 111 1566789999999999999999988764

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.85  E-value=1.5e-21  Score=153.02  Aligned_cols=152  Identities=16%  Similarity=0.186  Sum_probs=103.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC--CCc--------------------------------ccccCcceEEEEEEEc
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE--DTS--------------------------------VISPTLGFNIKTVTYQ   58 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~   58 (185)
                      ....++|+++|++|+|||||+++|++.  .+.                                ....|.......+...
T Consensus         4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~   83 (458)
T 1f60_A            4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (458)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence            456799999999999999999999753  111                                1123444555566778


Q ss_pred             CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc---cHH---HHHHHHHHHHhccccCCCe-EEEEeecCCCCC
Q 029920           59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR---RLD---DCKMELDNLLKEERLSGAS-LLILANKQDING  131 (185)
Q Consensus        59 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~  131 (185)
                      +..+.+|||||++.+...+..++..+|++++|+|+++..   +|+   .....+... ..   .+.| +++++||+|+.+
T Consensus        84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~---~~v~~iivviNK~Dl~~  159 (458)
T 1f60_A           84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FT---LGVRQLIVAVNKMDSVK  159 (458)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HH---TTCCEEEEEEECGGGGT
T ss_pred             CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HH---cCCCeEEEEEEcccccc
Confidence            899999999999999999999999999999999998742   221   222222222 21   2454 999999999874


Q ss_pred             CCC--HHHHHHhcC----cccccCccceEEEeecccCCCCHHHH
Q 029920          132 ALT--PTEIAKVLN----LEAMDKTRHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus       132 ~~~--~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (185)
                      ...  .+++...+.    ...+. ...++++++||++|.|++++
T Consensus       160 ~~~~~~~~i~~~~~~~l~~~g~~-~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          160 WDESRFQEIVKETSNFIKKVGYN-PKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCC-GGGCCEEECCTTTCBTTTBC
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCC-ccCceEEEeecccCcCcccc
Confidence            211  112222111    11111 02478999999999998743

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.85  E-value=1.6e-22  Score=158.93  Aligned_cols=154  Identities=18%  Similarity=0.188  Sum_probs=90.5

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC--CCc--------------------------------ccccCcceEEEEEEEc
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE--DTS--------------------------------VISPTLGFNIKTVTYQ   58 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~   58 (185)
                      .+..++|+++|+.++|||||+++|...  .+.                                ....|.......+..+
T Consensus        40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~  119 (467)
T 1r5b_A           40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  119 (467)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence            567799999999999999999998631  110                                1122333434456667


Q ss_pred             CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc---cHH---HHHHHHHHHHhccccCCCe-EEEEeecCCCCC
Q 029920           59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR---RLD---DCKMELDNLLKEERLSGAS-LLILANKQDING  131 (185)
Q Consensus        59 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~  131 (185)
                      +..+.+|||||++.|...+..++..+|++|+|+|+++..   +|+   .....+...    ...++| +++++||+|+..
T Consensus       120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~----~~~~vp~iivviNK~Dl~~  195 (467)
T 1r5b_A          120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA----RTQGINHLVVVINKMDEPS  195 (467)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH----HHTTCSSEEEEEECTTSTT
T ss_pred             CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH----HHcCCCEEEEEEECccCCC
Confidence            889999999999999988888899999999999999852   222   122222221    223576 999999999964


Q ss_pred             CC-CHH---H----HHHhcCcc-cccCccceEEEeecccCCCCHHHHH
Q 029920          132 AL-TPT---E----IAKVLNLE-AMDKTRHWKIVGCSAYTGEGLLEGF  170 (185)
Q Consensus       132 ~~-~~~---~----~~~~~~~~-~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (185)
                      .. ..+   +    +...+... .+....+++++++||++|.|+++++
T Consensus       196 ~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          196 VQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             ccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            32 111   1    22211111 1100126889999999999998754

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.85  E-value=1.3e-20  Score=133.31  Aligned_cols=161  Identities=16%  Similarity=0.142  Sum_probs=98.3

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCC-cccccCcceEE--EEEEEcCeEEEEEEcCCchh----------hHHHHH
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDT-SVISPTLGFNI--KTVTYQKYTLNIWDVGGQRT----------IRSYWR   78 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~-~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~~----------~~~~~~   78 (185)
                      ......+|+++|++|||||||+++|++..+ ..+.++.+...  ..+.+++ .+.+|||||...          +.....
T Consensus        22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  100 (210)
T 1pui_A           22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALG  100 (210)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence            345668999999999999999999998873 33344444322  2233333 678999999732          233333


Q ss_pred             hhh---cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccC-ccceE
Q 029920           79 NYF---EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDK-TRHWK  154 (185)
Q Consensus        79 ~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~  154 (185)
                      .++   ..++++++++|++++.+...  ..+..++.   ..+.|+++++||+|+.+........... ...+.. ...+.
T Consensus       101 ~~~~~~~~~~~~~~v~d~~~~~~~~~--~~~~~~~~---~~~~~~~~v~nK~D~~s~~~~~~~~~~~-~~~~~~~~~~~~  174 (210)
T 1pui_A          101 EYLEKRQSLQGLVVLMDIRHPLKDLD--QQMIEWAV---DSNIAVLVLLTKADKLASGARKAQLNMV-REAVLAFNGDVQ  174 (210)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHH---HTTCCEEEEEECGGGSCHHHHHHHHHHH-HHHHGGGCSCEE
T ss_pred             HHHHhhhcccEEEEEEECCCCCchhH--HHHHHHHH---HcCCCeEEEEecccCCCchhHHHHHHHH-HHHHHhcCCCCc
Confidence            444   46899999999998655432  11222222   2368999999999986532111101111 011111 12467


Q ss_pred             EEeecccCCCCHHHHHHHHHHHHhh
Q 029920          155 IVGCSAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       155 ~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                      ++++||+++.|++++++.|.+.+.+
T Consensus       175 ~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          175 VETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             eEEEeecCCCCHHHHHHHHHHHHhh
Confidence            8999999999999999999887755

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.84  E-value=1.8e-19  Score=143.19  Aligned_cols=116  Identities=17%  Similarity=0.172  Sum_probs=83.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCC--Cc-----------------------ccccCcceEEEEEEEcCeEEEEEEc
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGED--TS-----------------------VISPTLGFNIKTVTYQKYTLNIWDV   67 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~--~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~D~   67 (185)
                      ..+.++|+++|++|+|||||+++|+...  +.                       ....+.......+.+++..+.+|||
T Consensus        10 ~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDT   89 (529)
T 2h5e_A           10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDT   89 (529)
T ss_dssp             HHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECC
T ss_pred             hcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEEC
Confidence            3567999999999999999999997531  10                       0011222233456778899999999


Q ss_pred             CCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC
Q 029920           68 GGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL  133 (185)
Q Consensus        68 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~  133 (185)
                      ||+..+......++..+|++++|+|+++..... ....+..    ....++|+++++||+|+....
T Consensus        90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~----~~~~~ipiivviNK~Dl~~~~  150 (529)
T 2h5e_A           90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEV----TRLRDTPILTFMNKLDRDIRD  150 (529)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHH----HTTTTCCEEEEEECTTSCCSC
T ss_pred             CCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHH----HHHcCCCEEEEEcCcCCcccc
Confidence            999999888888999999999999999854322 2222222    223478999999999997653

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.83  E-value=1.6e-20  Score=157.91  Aligned_cols=160  Identities=18%  Similarity=0.130  Sum_probs=106.2

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCC-------Cc--------ccccCcceE----EEEEEEcCeEEEEEEcCCchhh
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGED-------TS--------VISPTLGFN----IKTVTYQKYTLNIWDVGGQRTI   73 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~-------~~--------~~~~t~~~~----~~~~~~~~~~~~~~D~~g~~~~   73 (185)
                      ....++|+++|++++|||||+++|.+..       +.        ....+.+.+    ...+...+..+.+|||||++.+
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            4567999999999999999999997631       00        011122222    2234556789999999999999


Q ss_pred             HHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEeecCCCCCCCCH-H----HHHHhcCcccc
Q 029920           74 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS-LLILANKQDINGALTP-T----EIAKVLNLEAM  147 (185)
Q Consensus        74 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~-~----~~~~~~~~~~~  147 (185)
                      ......++..+|++|+|+|+++.... ...+++..+..    .++| +|+++||+|+.+.... +    ++...+....+
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~  447 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF  447 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence            98888899999999999999985432 23333333222    2677 7999999999753211 1    12222211111


Q ss_pred             cCccceEEEeecccCC--------CCHHHHHHHHHHHHh
Q 029920          148 DKTRHWKIVGCSAYTG--------EGLLEGFDWLVQDIA  178 (185)
Q Consensus       148 ~~~~~~~~~~~Sa~~~--------~~i~~l~~~l~~~~~  178 (185)
                      .. ..++++++||++|        .|++++++.|.+.+.
T Consensus       448 ~~-~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          448 PG-DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             CT-TTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             cc-cceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence            11 3578999999999        468889988887553

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.83  E-value=8.7e-20  Score=149.23  Aligned_cols=115  Identities=22%  Similarity=0.148  Sum_probs=86.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC--CC------------c-------ccccCcceEEEEEEEcCeEEEEEEcCCch
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE--DT------------S-------VISPTLGFNIKTVTYQKYTLNIWDVGGQR   71 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~--~~------------~-------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~   71 (185)
                      ..+..+|+++|++|+|||||+++|...  .+            .       ....|.......+.+.+..+++|||||+.
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~   88 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV   88 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence            456789999999999999999999731  11            0       12234444555667788999999999999


Q ss_pred             hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           72 TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        72 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      .+...+..+++.+|++++|+|+++..+...... |.....    .+.|+++++||+|+...
T Consensus        89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~-~~~~~~----~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV-WRQAEK----YKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHHH----TTCCEEEEEECTTSTTC
T ss_pred             chHHHHHHHHHHCCEEEEEEECCCCcchhhHHH-HHHHHH----cCCCEEEEEECCCcccC
Confidence            999999999999999999999998777665433 333322    37999999999998765

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.83  E-value=1.2e-22  Score=163.46  Aligned_cols=160  Identities=23%  Similarity=0.192  Sum_probs=87.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc----------------------------------ccccCcceEEEEEEEc
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS----------------------------------VISPTLGFNIKTVTYQ   58 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~----------------------------------~~~~t~~~~~~~~~~~   58 (185)
                      .+..++|+++|++|+|||||+++|++....                                  ....|.......+..+
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            456789999999999999999999531100                                  0111333334445556


Q ss_pred             CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc---cH---HHHHHHHHHHHhccccCCCe-EEEEeecCCCCC
Q 029920           59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR---RL---DDCKMELDNLLKEERLSGAS-LLILANKQDING  131 (185)
Q Consensus        59 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~  131 (185)
                      +..+.+|||||++.+...+..++..+|++|+|+|+++..   .+   ......+... ..   .++| +|+|+||+|+..
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~-~~---lgip~iIvviNKiDl~~  329 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLL-RA---LGISEIVVSVNKLDLMS  329 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHH-HH---SSCCCEEEEEECGGGGT
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHH-HH---cCCCeEEEEEecccccc
Confidence            789999999999998888888889999999999998632   11   1112222222 22   2455 999999999865


Q ss_pred             CCC--HH----HHHHhc-CcccccCccceEEEeecccCCCCHH--------------HHHHHHHHHH
Q 029920          132 ALT--PT----EIAKVL-NLEAMDKTRHWKIVGCSAYTGEGLL--------------EGFDWLVQDI  177 (185)
Q Consensus       132 ~~~--~~----~~~~~~-~~~~~~~~~~~~~~~~Sa~~~~~i~--------------~l~~~l~~~~  177 (185)
                      ...  ..    ++...+ ....+. ...++++++||++|.|++              +|++.|.+.+
T Consensus       330 ~~~~~~~~i~~el~~~l~~~~g~~-~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~  395 (592)
T 3mca_A          330 WSEDRFQEIKNIVSDFLIKMVGFK-TSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV  395 (592)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTSCCC-GGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred             ccHHHHHHHHHHHHHHHHHhhCCC-ccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence            321  11    122222 111111 135789999999999998              6777776543

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.82  E-value=3.1e-21  Score=147.02  Aligned_cols=163  Identities=15%  Similarity=0.165  Sum_probs=83.8

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCcc--c--------ccCcceEEEEE--EEcC--eEEEEEEcCCc-------
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTSV--I--------SPTLGFNIKTV--TYQK--YTLNIWDVGGQ-------   70 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~--~--------~~t~~~~~~~~--~~~~--~~~~~~D~~g~-------   70 (185)
                      .....++|+|+|++|+|||||+++|.+.....  .        .++.+......  ...+  ..+.+|||||.       
T Consensus        33 ~~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~  112 (361)
T 2qag_A           33 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR  112 (361)
T ss_dssp             HHCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-----------
T ss_pred             cCCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccH
Confidence            35667999999999999999999987654321  1        13333332222  2233  47999999998       


Q ss_pred             hhhHHHHH-------hhhcCC-------------CEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC
Q 029920           71 RTIRSYWR-------NYFEQT-------------DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN  130 (185)
Q Consensus        71 ~~~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  130 (185)
                      +.+..+..       .++..+             |+++|+++.+ ..++......+...+.    .+.|+|+|+||+|+.
T Consensus       113 e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~  187 (361)
T 2qag_A          113 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTL  187 (361)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCC
Confidence            44444443       444332             3455555532 3445444433333332    478999999999986


Q ss_pred             CCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHHhhhcc
Q 029920          131 GALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIY  182 (185)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  182 (185)
                      .............  ......+++++++||+++.| ++.+.++.+.+.+..+
T Consensus       188 ~~~ev~~~k~~i~--~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip  236 (361)
T 2qag_A          188 TLKERERLKKRIL--DEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIP  236 (361)
T ss_dssp             CHHHHHHHHHHHH--HHTTCC-CCSCCCC----------CHHHHHHHHHTCS
T ss_pred             CHHHHHHHHHHHH--HHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence            5422222111111  11122567899999999999 8888888888766543

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.82  E-value=8.7e-20  Score=136.73  Aligned_cols=161  Identities=15%  Similarity=0.186  Sum_probs=99.4

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCC-c----ccccCcc---eEEE--------------------------------
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDT-S----VISPTLG---FNIK--------------------------------   53 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~-~----~~~~t~~---~~~~--------------------------------   53 (185)
                      ...++|+|+|++|+|||||+|+|.+..+ +    ..+....   ....                                
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE  101 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence            4568999999999999999999999876 1    1111110   0000                                


Q ss_pred             -----------------------EEEEcCeEEEEEEcCCchh-------------hHHHHHhhhcCCCEEEEEEeCCCcc
Q 029920           54 -----------------------TVTYQKYTLNIWDVGGQRT-------------IRSYWRNYFEQTDGLVWVVDSSDLR   97 (185)
Q Consensus        54 -----------------------~~~~~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~   97 (185)
                                             ........+.+|||||...             +......++..+|++++|+|..+..
T Consensus       102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~  181 (315)
T 1jwy_B          102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD  181 (315)
T ss_dssp             HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred             HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence                                   0111346799999999753             5566778889999999999975422


Q ss_pred             cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccC-ccceEEEeecccC---CCCHHHHHHH
Q 029920           98 RLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDK-TRHWKIVGCSAYT---GEGLLEGFDW  172 (185)
Q Consensus        98 s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~---~~~i~~l~~~  172 (185)
                      ........+...+.   ..+.|+++|+||+|+..... ..+..   ....... ....++..+|+.+   +.|++++++.
T Consensus       182 ~~~~~~~~i~~~~~---~~~~~~i~v~NK~Dl~~~~~~~~~~~---~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~  255 (315)
T 1jwy_B          182 LANSDALQLAKEVD---PEGKRTIGVITKLDLMDKGTDAMEVL---TGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKS  255 (315)
T ss_dssp             STTCSHHHHHHHHC---SSCSSEEEEEECTTSSCSSCCCHHHH---TTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHH
T ss_pred             hhhhHHHHHHHHhC---CCCCcEEEEEcCcccCCcchHHHHHH---hCCCccCCCCeEEEecCChhhhccCCCHHHHHHH
Confidence            11011111222222   23789999999999875433 11211   1111110 1234566677777   8999999999


Q ss_pred             HHHHHhhh
Q 029920          173 LVQDIASR  180 (185)
Q Consensus       173 l~~~~~~~  180 (185)
                      +.+.+...
T Consensus       256 ~~~~~~~~  263 (315)
T 1jwy_B          256 EILYFKNH  263 (315)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHhCC
Confidence            88887653

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.82  E-value=3.3e-19  Score=145.30  Aligned_cols=113  Identities=15%  Similarity=0.144  Sum_probs=85.2

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc--------------c-------cccCcceEEEEEEEcCeEEEEEEcCCch
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS--------------V-------ISPTLGFNIKTVTYQKYTLNIWDVGGQR   71 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~--------------~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~   71 (185)
                      ..+..+|+++|+.|+|||||+++|.+....              .       ...+.......+......+++|||||+.
T Consensus         6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~   85 (665)
T 2dy1_A            6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG   85 (665)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred             cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence            456789999999999999999999742221              0       0123334455567788999999999999


Q ss_pred             hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC
Q 029920           72 TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN  130 (185)
Q Consensus        72 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  130 (185)
                      .+......+++.+|++++|+|+++..... ...++.....    .+.|+++++||+|+.
T Consensus        86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           86 DFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred             chHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecCCchh
Confidence            99999999999999999999988754433 2233333322    379999999999987

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.82  E-value=3e-19  Score=130.62  Aligned_cols=117  Identities=20%  Similarity=0.210  Sum_probs=81.4

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhh--------
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYF--------   81 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~--------   81 (185)
                      .+.++|+++|++|+|||||+|+|.+.......+    +.......+..++..+.+|||||+.++......++        
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~  113 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV  113 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence            468999999999999999999999987643332    44455666778889999999999876543322222        


Q ss_pred             -cCCCEEEEEEeCCCcccHHHH-HHHHHHHHhccc-cCCCeEEEEeecCCCCC
Q 029920           82 -EQTDGLVWVVDSSDLRRLDDC-KMELDNLLKEER-LSGASLLILANKQDING  131 (185)
Q Consensus        82 -~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~  131 (185)
                       ..+|++++|+|+++.. +... ..++..+..... ....|+++|+||+|+..
T Consensus       114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~  165 (262)
T 3def_A          114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP  165 (262)
T ss_dssp             TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred             cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence             2789999999987644 3322 233333332211 11248999999999853

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.81  E-value=9.8e-20  Score=148.99  Aligned_cols=162  Identities=20%  Similarity=0.236  Sum_probs=106.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcce--------------EEEE------------------------
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGF--------------NIKT------------------------   54 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~--------------~~~~------------------------   54 (185)
                      ....++|+|+|.+|+|||||+|+|.+......+...++              +...                        
T Consensus        66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~  145 (695)
T 2j69_A           66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE  145 (695)
T ss_dssp             HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence            45679999999999999999999998876433221111              1100                        


Q ss_pred             -------------------EEEcC----eEEEEEEcCCchh---hHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHH
Q 029920           55 -------------------VTYQK----YTLNIWDVGGQRT---IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDN  108 (185)
Q Consensus        55 -------------------~~~~~----~~~~~~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~  108 (185)
                                         +....    ..+.+|||||...   .......+++.+|++++|+|++++.+......+ ..
T Consensus       146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l-~~  224 (695)
T 2j69_A          146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYL-EN  224 (695)
T ss_dssp             HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHH-HH
T ss_pred             HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHH-HH
Confidence                               00000    3589999999655   345667788999999999999987766654332 22


Q ss_pred             HHhccccCCCeEEEEeecCCCCCCC-----CHHH-------HHHh----cCccccc----CccceEEEeeccc-------
Q 029920          109 LLKEERLSGASLLILANKQDINGAL-----TPTE-------IAKV----LNLEAMD----KTRHWKIVGCSAY-------  161 (185)
Q Consensus       109 ~~~~~~~~~~~~ivv~nK~D~~~~~-----~~~~-------~~~~----~~~~~~~----~~~~~~~~~~Sa~-------  161 (185)
                      .+..   .+.|+++|+||+|+....     ...+       +...    +.. ...    .....+++++||+       
T Consensus       225 ~l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~-~~~~~g~~~~~~~v~~vSAk~al~~~~  300 (695)
T 2j69_A          225 YIKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAE-YCTVEGQNIYDERVFELSSIQALRRRL  300 (695)
T ss_dssp             HTTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGG-GGBSSSCBCGGGTEEECCHHHHHHHHH
T ss_pred             HHHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHH-hhcccccccCCCcEEEEeChHHHHhhc
Confidence            2222   267899999999985432     1101       1111    110 000    0123468999999       


Q ss_pred             -------CCCCHHHHHHHHHHHHhh
Q 029920          162 -------TGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       162 -------~~~~i~~l~~~l~~~~~~  179 (185)
                             ++.|++++++.+.+.+.+
T Consensus       301 ~~~~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          301 KNPQADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             HCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred             cCchhhhhccCHHHHHHHHHHHHHH
Confidence                   999999999999887754

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.81  E-value=3.8e-19  Score=137.24  Aligned_cols=158  Identities=20%  Similarity=0.198  Sum_probs=108.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcC-eEEEEEEcCCchh-------hHHHHHhhhcCCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQK-YTLNIWDVGGQRT-------IRSYWRNYFEQTD   85 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~-------~~~~~~~~~~~~d   85 (185)
                      -.|+++|++|||||||++++++....   ....|.......+..++ ..+.++|+||..+       +........+.++
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            35899999999999999999987542   11223334455566665 7899999999632       1122233456799


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhcc-ccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920           86 GLVWVVDSSDLRRLDDCKMELDNLLKEE-RLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE  164 (185)
Q Consensus        86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (185)
                      .+++++|++ ...+..+..+..+..... .....|.++++||+|+........+...+.     . .+.+++.+||+++.
T Consensus       238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~-----~-~g~~vi~iSA~~g~  310 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA-----R-EGLAVLPVSALTGA  310 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----T-TTSCEEECCTTTCT
T ss_pred             hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHH-----h-cCCeEEEEECCCcc
Confidence            999999998 555666655555544331 123588999999999865411122222221     1 35679999999999


Q ss_pred             CHHHHHHHHHHHHhhhc
Q 029920          165 GLLEGFDWLVQDIASRI  181 (185)
Q Consensus       165 ~i~~l~~~l~~~~~~~~  181 (185)
                      |+++++++|.+.+.+..
T Consensus       311 gi~eL~~~i~~~l~~~~  327 (416)
T 1udx_A          311 GLPALKEALHALVRSTP  327 (416)
T ss_dssp             THHHHHHHHHHHHHTSC
T ss_pred             CHHHHHHHHHHHHHhcc
Confidence            99999999999987643

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.80  E-value=9.7e-19  Score=143.09  Aligned_cols=115  Identities=22%  Similarity=0.170  Sum_probs=86.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhC--CCCc-------------------ccccCcceEEEEEEEcCeEEEEEEcCCch
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKING--EDTS-------------------VISPTLGFNIKTVTYQKYTLNIWDVGGQR   71 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~--~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~   71 (185)
                      ..+..+|+++|++|+|||||+++|..  ..+.                   ....|.......+.+++..+++|||||+.
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~   86 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV   86 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence            46678999999999999999999973  1110                   01123333445567788999999999999


Q ss_pred             hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           72 TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        72 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      .+......+++.+|++++|+|+++..+...... +.....    .+.|+++++||+|+...
T Consensus        87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~-~~~~~~----~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETV-WRQATT----YGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHHHHH----TTCCEEEEEECTTSTTC
T ss_pred             chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHH-HHHHHH----cCCCEEEEEECCCcccc
Confidence            998888999999999999999998766654433 333322    37999999999998765

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.80  E-value=2.3e-18  Score=141.05  Aligned_cols=115  Identities=18%  Similarity=0.049  Sum_probs=84.5

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCC--Cc-------------------ccccCcceEEEEEEEcC-------eEEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGED--TS-------------------VISPTLGFNIKTVTYQK-------YTLNI   64 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~--~~-------------------~~~~t~~~~~~~~~~~~-------~~~~~   64 (185)
                      .++..+|+++|+.|+|||||+++|....  +.                   ....|.......+.+.+       +.+++
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI   86 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence            4567899999999999999999996421  11                   01112323333455555       89999


Q ss_pred             EEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           65 WDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        65 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      |||||+..|...+..+++.+|++|+|+|+++....+.. ..+....    ..+.|+++++||+|+...
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~~~~----~~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWRQAN----KYKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHHHHH----HcCCCEEEEEeCCCcccc
Confidence            99999999999999999999999999999986544432 2333332    237899999999998654

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.78  E-value=7.3e-18  Score=123.79  Aligned_cols=118  Identities=20%  Similarity=0.214  Sum_probs=79.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEcCeEEEEEEcCCchhhHH-------HHHhh--
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQKYTLNIWDVGGQRTIRS-------YWRNY--   80 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~--   80 (185)
                      ...++|+++|.+|+|||||+|+|++..+....+    +.......+..++..+.+|||||...+..       ....+  
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~  116 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL  116 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence            458999999999999999999999887643332    22233445667788999999999765431       12222  


Q ss_pred             hcCCCEEEEEEeCCCcccHHHH-HHHHHHHHhccc-cCCCeEEEEeecCCCCCC
Q 029920           81 FEQTDGLVWVVDSSDLRRLDDC-KMELDNLLKEER-LSGASLLILANKQDINGA  132 (185)
Q Consensus        81 ~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~  132 (185)
                      ...+|++++|+|++.. ++... ..++..+..... ....|+++|+||+|+...
T Consensus       117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~  169 (270)
T 1h65_A          117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP  169 (270)
T ss_dssp             TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred             cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence            2468999999998753 33332 233333332211 112699999999998654

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.77  E-value=1.1e-18  Score=133.04  Aligned_cols=152  Identities=18%  Similarity=0.218  Sum_probs=96.5

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCc--c------------------------------------------
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTL--G------------------------------------------   49 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~--~------------------------------------------   49 (185)
                      ..++|+|+|++|||||||+|+|.+..+. ....+.  .                                          
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            4569999999999999999999997762 111000  0                                          


Q ss_pred             -------------eEEEEEEEcCeEEEEEEcCCchhh-------------HHHHHhhhcCCCEEEEEEeCCCcccHHHHH
Q 029920           50 -------------FNIKTVTYQKYTLNIWDVGGQRTI-------------RSYWRNYFEQTDGLVWVVDSSDLRRLDDCK  103 (185)
Q Consensus        50 -------------~~~~~~~~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~  103 (185)
                                   ............+.+|||||....             ......|+..+|++++|+|..+......  
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~--  190 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS--  190 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC--
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH--
Confidence                         000111112356899999997665             6677888999999999998765332211  


Q ss_pred             HHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHH
Q 029920          104 MELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLV  174 (185)
Q Consensus       104 ~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (185)
                       .+..++......+.|+++|+||+|+.+... ..+.....     ....+.+++++|+.++.++++.+....
T Consensus       191 -~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~s~~~i~~~~~~~~  256 (360)
T 3t34_A          191 -DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGR-----SFKLKYPWVGVVNRSQADINKNVDMIA  256 (360)
T ss_dssp             -HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTS-----SSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred             -HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCc-----cccccCCeEEEEECChHHhccCCCHHH
Confidence             112223332334689999999999865432 22222111     122456789999999888876655433

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.77  E-value=1.7e-18  Score=131.73  Aligned_cols=156  Identities=15%  Similarity=0.156  Sum_probs=95.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-----ccccCcce-------------------------------------
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-----VISPTLGF-------------------------------------   50 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-----~~~~t~~~-------------------------------------   50 (185)
                      ....++|+|+|.+|+|||||+|+|.+..+.     ..+.....                                     
T Consensus        28 ~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~  107 (353)
T 2x2e_A           28 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  107 (353)
T ss_dssp             GCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHH
Confidence            345689999999999999999999998763     11111110                                     


Q ss_pred             -------------EEEEEEEcCeEEEEEEcCCch-------------hhHHHHHhhhcCCC-EEEEEEeCCCcccHHHHH
Q 029920           51 -------------NIKTVTYQKYTLNIWDVGGQR-------------TIRSYWRNYFEQTD-GLVWVVDSSDLRRLDDCK  103 (185)
Q Consensus        51 -------------~~~~~~~~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~  103 (185)
                                   .......+...+.+|||||..             .+..+...|+..++ ++++|+|++....-....
T Consensus       108 i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~  187 (353)
T 2x2e_A          108 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  187 (353)
T ss_dssp             HHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH
T ss_pred             hcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH
Confidence                         000011124679999999952             34556667776655 555567766422211211


Q ss_pred             HHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccc-eEEEeecccCCCCHHHHHHHHHH
Q 029920          104 MELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRH-WKIVGCSAYTGEGLLEGFDWLVQ  175 (185)
Q Consensus       104 ~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~  175 (185)
                      ..+..+    ...+.|+++|+||+|+.+... ..+...   ........+ .+++++||+++.|++++++++.+
T Consensus       188 ~i~~~~----~~~~~~~i~V~NK~Dl~~~~~~~~~~~~---~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          188 KVAKEV----DPQGQRTIGVITKLDLMDEGTDARDVLE---NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHH----CTTCTTEEEEEECGGGSCTTCCCHHHHT---TCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHHh----CcCCCceEEEeccccccCcchhHHHHHh---CCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            222222    234789999999999865433 122211   111111123 46899999999999999998876

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.77  E-value=1.6e-17  Score=132.59  Aligned_cols=116  Identities=16%  Similarity=0.182  Sum_probs=86.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC------------------CCc-------ccccCcceEEEEEEEcCeEEEEEEc
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE------------------DTS-------VISPTLGFNIKTVTYQKYTLNIWDV   67 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~------------------~~~-------~~~~t~~~~~~~~~~~~~~~~~~D~   67 (185)
                      ..+..+|+|+|+.++|||||..+|+-.                  ...       ...-|+......+.++++.++++||
T Consensus        28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDT  107 (548)
T 3vqt_A           28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDT  107 (548)
T ss_dssp             HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECC
T ss_pred             ccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeC
Confidence            456788999999999999999998411                  110       1112444455567889999999999


Q ss_pred             CCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC
Q 029920           68 GGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL  133 (185)
Q Consensus        68 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~  133 (185)
                      ||+..|.......++-+|++++|+|+.+.-..+. ...|+....    .++|.++++||+|.....
T Consensus       108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT-~~v~~~a~~----~~lp~i~fINK~Dr~~ad  168 (548)
T 3vqt_A          108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQT-RKLMDVCRM----RATPVMTFVNKMDREALH  168 (548)
T ss_dssp             CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHH-HHHHHHHHH----TTCCEEEEEECTTSCCCC
T ss_pred             CCcHHHHHHHHHHHHhcCceEEEeecCCCccccc-HHHHHHHHH----hCCceEEEEecccchhcc
Confidence            9999999999999999999999999998644343 333344433    379999999999987653

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.76  E-value=5.7e-20  Score=141.43  Aligned_cols=79  Identities=25%  Similarity=0.277  Sum_probs=46.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcccc----cCcceEEEEE--E-------------------Ec---CeEEEEEEcC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVIS----PTLGFNIKTV--T-------------------YQ---KYTLNIWDVG   68 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~----~t~~~~~~~~--~-------------------~~---~~~~~~~D~~   68 (185)
                      ++|+++|.+|+|||||+|+|++... ..+    .|........  .                   ++   ..++.+||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~-~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp   79 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDV-EIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence            5899999999999999999998763 211    1222222211  1                   12   2689999999


Q ss_pred             Cchhh----HHHHH---hhhcCCCEEEEEEeCCCc
Q 029920           69 GQRTI----RSYWR---NYFEQTDGLVWVVDSSDL   96 (185)
Q Consensus        69 g~~~~----~~~~~---~~~~~~d~~i~v~d~~~~   96 (185)
                      |....    ..+..   .+++.+|++++|+|+++.
T Consensus        80 G~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           80 GLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             ---------------CCCSSTTCSEEEEEEETTCC
T ss_pred             CcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            97532    22222   346889999999999875

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.72  E-value=2.3e-18  Score=131.10  Aligned_cols=155  Identities=17%  Similarity=0.165  Sum_probs=95.6

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC------CCcccc--c--C-------------------cceEEE----------
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE------DTSVIS--P--T-------------------LGFNIK----------   53 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~------~~~~~~--~--t-------------------~~~~~~----------   53 (185)
                      ..+.++|+++|.+|+|||||+++|...      +.....  +  +                   .+....          
T Consensus        76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~  155 (355)
T 3p32_A           76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG  155 (355)
T ss_dssp             CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence            456789999999999999999998521      111000  0  0                   001000          


Q ss_pred             ----------EEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEE
Q 029920           54 ----------TVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLIL  123 (185)
Q Consensus        54 ----------~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv  123 (185)
                                .+...+..+.++||||....   .......+|++++|+|....+......       .  ...+.|.++|
T Consensus       156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~-------~--~~~~~p~ivV  223 (355)
T 3p32_A          156 VTRATRETVVLLEAAGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK-------K--GVLELADIVV  223 (355)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC-------T--TSGGGCSEEE
T ss_pred             hhHHHHHHHHHHhhCCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH-------H--hHhhcCCEEE
Confidence                      00224678999999995432   223358899999999987654432211       1  1124689999


Q ss_pred             eecCCCCCCCCHHHHHHhcCccc--cc---CccceEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920          124 ANKQDINGALTPTEIAKVLNLEA--MD---KTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       124 ~nK~D~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                      +||+|+............+....  ..   .....+++++||++|.|+++++++|.+.+..
T Consensus       224 lNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          224 VNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             EECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             EECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            99999864322222222221100  00   0014579999999999999999999988754

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.71  E-value=2.2e-17  Score=131.92  Aligned_cols=120  Identities=17%  Similarity=0.234  Sum_probs=81.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCc--ccccCcceEE-EEEEE---------------------------------
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTS--VISPTLGFNI-KTVTY---------------------------------   57 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~--~~~~t~~~~~-~~~~~---------------------------------   57 (185)
                      ...++|+|+|.+|+|||||+|+|.+..+.  ..++...+.. ..+..                                 
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            45689999999999999999999998764  2222111100 00000                                 


Q ss_pred             ------cC---eEEEEEEcCCchh-----------hHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCC
Q 029920           58 ------QK---YTLNIWDVGGQRT-----------IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSG  117 (185)
Q Consensus        58 ------~~---~~~~~~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  117 (185)
                            .+   ..+.++||||...           +......++..+|++++|+|+++.........++..+.    ..+
T Consensus       143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~  218 (550)
T 2qpt_A          143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR----GHE  218 (550)
T ss_dssp             EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT----TCG
T ss_pred             ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH----hcC
Confidence                  00   3589999999764           55667778899999999999987544444444444332    225


Q ss_pred             CeEEEEeecCCCCCCCCHHH
Q 029920          118 ASLLILANKQDINGALTPTE  137 (185)
Q Consensus       118 ~~~ivv~nK~D~~~~~~~~~  137 (185)
                      .|+++|+||+|+.......+
T Consensus       219 ~pvilVlNK~Dl~~~~el~~  238 (550)
T 2qpt_A          219 DKIRVVLNKADMVETQQLMR  238 (550)
T ss_dssp             GGEEEEEECGGGSCHHHHHH
T ss_pred             CCEEEEEECCCccCHHHHHH
Confidence            78999999999876433333

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.70  E-value=3.6e-18  Score=127.13  Aligned_cols=162  Identities=16%  Similarity=0.189  Sum_probs=78.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC-CCccc---------ccCcceEEEEEEE--c--CeEEEEEEcCCc-------h
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE-DTSVI---------SPTLGFNIKTVTY--Q--KYTLNIWDVGGQ-------R   71 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~-~~~~~---------~~t~~~~~~~~~~--~--~~~~~~~D~~g~-------~   71 (185)
                      ..-.++|+++|++|+|||||+++|.+. .++..         .++.......+..  .  ...+.+||++|.       +
T Consensus        15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e   94 (301)
T 2qnr_A           15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD   94 (301)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence            445689999999999999999998875 33221         1222211111111  1  367899999997       4


Q ss_pred             hhHHHHH-------hhhcC-------------CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC
Q 029920           72 TIRSYWR-------NYFEQ-------------TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING  131 (185)
Q Consensus        72 ~~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  131 (185)
                      .+.....       .++..             +++++|+.+.+. .+++....   .++... ..+.|+++|+||+|+..
T Consensus        95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~---~~l~~l-~~~~~iilV~~K~Dl~~  169 (301)
T 2qnr_A           95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV---AFMKAI-HNKVNIVPVIAKADTLT  169 (301)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH---HHHHHH-TTTSCEEEEECCGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH---HHHHHH-HhcCCEEEEEEeCCCCC
Confidence            4433332       33322             344666665432 12333321   222221 13579999999999865


Q ss_pred             CCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHHhhhcc
Q 029920          132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIY  182 (185)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  182 (185)
                      ..+.....+.. ...+. ..+++++++||+++ |++++|..+.+.+.+..+
T Consensus       170 ~~e~~~~~~~~-~~~~~-~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p  217 (301)
T 2qnr_A          170 LKERERLKKRI-LDEIE-EHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP  217 (301)
T ss_dssp             HHHHHHHHHHH-HHHHH-HTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHH-HHHHH-HcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence            32211111111 11111 14578999999999 999999999998876543

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.70  E-value=3.9e-17  Score=123.88  Aligned_cols=152  Identities=20%  Similarity=0.208  Sum_probs=87.9

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCC------CCcccc--cC---------------------cceEE------EE-----
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGE------DTSVIS--PT---------------------LGFNI------KT-----   54 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~------~~~~~~--~t---------------------~~~~~------~~-----   54 (185)
                      ....|+++|+||+|||||+|+|.+.      ......  ++                     .....      ..     
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t  152 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT  152 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence            4689999999999999999999752      110000  00                     00000      00     


Q ss_pred             ---------EEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEee
Q 029920           55 ---------VTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILAN  125 (185)
Q Consensus        55 ---------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~n  125 (185)
                               +...+..+.++||||.....   ....+.+|++++|+|+.++...+....   .+      ...|.++|+|
T Consensus       153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlN  220 (349)
T 2www_A          153 RTTNEAILLCEGAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVT  220 (349)
T ss_dssp             TTHHHHHHHHHHTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC---------------------CCSCSEEEEC
T ss_pred             HHHHHHHHhhccCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEe
Confidence                     01245789999999964222   233578999999999986533221111   11      1467899999


Q ss_pred             cCCCCCCCCHH----HHHHhcCcccc-cCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          126 KQDINGALTPT----EIAKVLNLEAM-DKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       126 K~D~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      |+|+.+.....    .+...+..... ......+++.+||++|.|+++++++|.+.+.
T Consensus       221 K~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          221 KSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             CCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             eecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            99985421111    12111111000 0012457899999999999999999988764

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.69  E-value=1.6e-17  Score=118.29  Aligned_cols=156  Identities=16%  Similarity=0.162  Sum_probs=95.2

Q ss_pred             HHhhccCceeEEEEEcCCCCChHHHHHHHhCCCC-----cccccCc------------ceEEEEEE--------------
Q 029920            8 RKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDT-----SVISPTL------------GFNIKTVT--------------   56 (185)
Q Consensus         8 ~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~-----~~~~~t~------------~~~~~~~~--------------   56 (185)
                      +......+..+|+++|++|+|||||+++|.+...     .......            +.....+.              
T Consensus        22 ~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (221)
T 2wsm_A           22 REALRESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYH  101 (221)
T ss_dssp             HHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHT
T ss_pred             HHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHH
Confidence            3344455678999999999999999999875421     1000000            11111111              


Q ss_pred             ----EcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           57 ----YQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        57 ----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                          ..+..+.++||+|+.....   .+-...+.+++|+|+.+.....  ..+.    ..   .+.|.++|+||+|+.+.
T Consensus       102 ~~~~~~~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~~--~~~~----~~---~~~~~iiv~NK~Dl~~~  169 (221)
T 2wsm_A          102 RLKKFSDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDVV--EKHP----EI---FRVADLIVINKVALAEA  169 (221)
T ss_dssp             TGGGGTTCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTHH--HHCH----HH---HHTCSEEEEECGGGHHH
T ss_pred             HHHhcCCCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchhh--hhhh----hh---hhcCCEEEEecccCCcc
Confidence                1345788999999511110   1112568899999998653211  1111    11   14789999999998532


Q ss_pred             --CCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920          133 --LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       133 --~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                        ....+....+...    ...++++++||++|.|+++++++|.+.+..
T Consensus       170 ~~~~~~~~~~~~~~~----~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~  214 (221)
T 2wsm_A          170 VGADVEKMKADAKLI----NPRAKIIEMDLKTGKGFEEWIDFLRGILNV  214 (221)
T ss_dssp             HTCCHHHHHHHHHHH----CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred             hhhHHHHHHHHHHHh----CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence              2344443333211    135689999999999999999999987754

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.69  E-value=4.8e-16  Score=118.31  Aligned_cols=114  Identities=18%  Similarity=0.176  Sum_probs=80.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCeEEEEEEcCCchh-------hHHHHHhhhcC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKYTLNIWDVGGQRT-------IRSYWRNYFEQ   83 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~   83 (185)
                      +...+|+++|.||+|||||+|+|++....   ....|.......+.+.+.+++++||||...       ........++.
T Consensus        70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~  149 (376)
T 4a9a_A           70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVART  149 (376)
T ss_dssp             CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence            44568999999999999999999987653   234566677788899999999999999432       22334455788


Q ss_pred             CCEEEEEEeCCCcccH-HHHHHHHHHHHhccccCCCeEEEEeecCCC
Q 029920           84 TDGLVWVVDSSDLRRL-DDCKMELDNLLKEERLSGASLLILANKQDI  129 (185)
Q Consensus        84 ~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~  129 (185)
                      +|++++|+|+++|... +.+...+..+-  ....+.|.++++||.|.
T Consensus       150 ad~il~vvD~~~p~~~~~~i~~EL~~~~--~~l~~k~~~i~~nK~d~  194 (376)
T 4a9a_A          150 CNLLFIILDVNKPLHHKQIIEKELEGVG--IRLNKTPPDILIKKKEK  194 (376)
T ss_dssp             CSEEEEEEETTSHHHHHHHHHHHHHHTT--EEETCCCCCEEEEECSS
T ss_pred             cCccccccccCccHHHHHHHHHHHHHhh--HhhccCChhhhhhHhhh
Confidence            9999999999986332 22222222211  12235677778888875

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.69  E-value=2.9e-16  Score=128.46  Aligned_cols=155  Identities=16%  Similarity=0.146  Sum_probs=97.5

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccc---cCc------------------------------------------
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVIS---PTL------------------------------------------   48 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~---~t~------------------------------------------   48 (185)
                      -..++|+|+|.+++|||||+|+|.+..+-...   .|.                                          
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            45689999999999999999999997661110   010                                          


Q ss_pred             -----c-----eEEEEEEEcCeEEEEEEcCCchh-------------hHHHHHhhh-cCCCEEEEEEeCCCcccHHHHHH
Q 029920           49 -----G-----FNIKTVTYQKYTLNIWDVGGQRT-------------IRSYWRNYF-EQTDGLVWVVDSSDLRRLDDCKM  104 (185)
Q Consensus        49 -----~-----~~~~~~~~~~~~~~~~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~  104 (185)
                           +     ........+...+.++||||...             .......|+ ..+|++++|+|+++.........
T Consensus       129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~  208 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  208 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred             cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence                 0     00111111234688999999432             333445555 57899999999987433222212


Q ss_pred             HHHHHHhccccCCCeEEEEeecCCCCCCCCH-HHHHHhcCccccc-CccceEEEeecccCCCCHHHHHHHHHH
Q 029920          105 ELDNLLKEERLSGASLLILANKQDINGALTP-TEIAKVLNLEAMD-KTRHWKIVGCSAYTGEGLLEGFDWLVQ  175 (185)
Q Consensus       105 ~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (185)
                      .+..+    ...+.|+++|+||+|+.+.... ..+..   ..... .....+++.+||++|.|++++++.+.+
T Consensus       209 ll~~L----~~~g~pvIlVlNKiDlv~~~~~~~~il~---~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          209 IAKEV----DPQGQRTIGVITKLDLMDEGTDARDVLE---NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  274 (772)
T ss_dssp             HHHHH----CTTCSSEEEEEECTTSSCTTCCSHHHHT---TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred             HHHHH----HhcCCCEEEEEeCcccCCcchhhHHHHH---HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence            22222    2236899999999998754332 22221   11111 113357899999999999999999886

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.68  E-value=1.3e-16  Score=133.10  Aligned_cols=114  Identities=17%  Similarity=0.148  Sum_probs=85.2

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCC------------Cc-------ccccCcceEEEEEEEc--------------
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGED------------TS-------VISPTLGFNIKTVTYQ--------------   58 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~------------~~-------~~~~t~~~~~~~~~~~--------------   58 (185)
                      ...+.++|+|+|++|+|||||+++|....            +.       ....|+......+.+.              
T Consensus        15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~   94 (842)
T 1n0u_A           15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD   94 (842)
T ss_dssp             CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred             CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccccccc
Confidence            45677899999999999999999997531            10       0112333223333333              


Q ss_pred             --CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC
Q 029920           59 --KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN  130 (185)
Q Consensus        59 --~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  130 (185)
                        +..+++|||||+..|...+..+++.+|++++|+|+++..+++....| .....    .+.|+++++||+|+.
T Consensus        95 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           95 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVL-RQALG----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCEEEEEEECHHHH
T ss_pred             CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCeEEEEECCCcc
Confidence              57899999999999999999999999999999999998777764433 33322    379999999999975

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.67  E-value=1.9e-16  Score=110.10  Aligned_cols=111  Identities=21%  Similarity=0.379  Sum_probs=85.5

Q ss_pred             CCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHH---HHHHhccc-cCCCeEEEEeecC-CCCCCCCHHHHHHhc
Q 029920           68 GGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMEL---DNLLKEER-LSGASLLILANKQ-DINGALTPTEIAKVL  142 (185)
Q Consensus        68 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~-~~~~~~ivv~nK~-D~~~~~~~~~~~~~~  142 (185)
                      +|+..++..|..|++++|++|||+|.+|.+.++ +...+   ..++.... ..+.|++|++||. |+.......++.+.+
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L  188 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHEL  188 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHT
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHc
Confidence            478899999999999999999999999976654 55555   33343322 3578999999995 788888999999999


Q ss_pred             CcccccCccceEEEeecccCCCCHHHHHHHHHHHHhhhc
Q 029920          143 NLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI  181 (185)
Q Consensus       143 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  181 (185)
                      +.... . +.|.+..|||.+|.|+.+.++||.+.+..+.
T Consensus       189 ~L~~l-~-R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~  225 (227)
T 3l82_B          189 HLNLL-N-HPWLVQDTEAETLTGFLNGIEWILEEVESKR  225 (227)
T ss_dssp             TGGGG-C-SCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred             CCcCC-C-CCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence            88766 3 7999999999999999999999998886653

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.66  E-value=3.7e-17  Score=123.75  Aligned_cols=154  Identities=16%  Similarity=0.165  Sum_probs=91.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhC------CCCccccc----Cc-------------------ceEEEE---------
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKING------EDTSVISP----TL-------------------GFNIKT---------   54 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~------~~~~~~~~----t~-------------------~~~~~~---------   54 (185)
                      ..+...|+++|++|+|||||++.|.+      ........    +.                   ......         
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g  132 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG  132 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence            45667899999999999999999853      22111000    00                   000000         


Q ss_pred             -----------EEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEE
Q 029920           55 -----------VTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLIL  123 (185)
Q Consensus        55 -----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv  123 (185)
                                 +...+..+.++||||.......   ....+|++++|+|+.+...++...    .     ...+.|.++|
T Consensus       133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~----~-----~~~~~p~ivv  200 (341)
T 2p67_A          133 ASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIK----K-----GLMEVADLIV  200 (341)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCC----H-----HHHHHCSEEE
T ss_pred             hHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHH----H-----hhhcccCEEE
Confidence                       0134678999999997654432   358899999999997643221110    0     0014678999


Q ss_pred             eecCCCCCCCCHHHHHHhcCc--cccc---CccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          124 ANKQDINGALTPTEIAKVLNL--EAMD---KTRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       124 ~nK~D~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      +||+|+............+..  ....   .....+++++||++|.|+++++++|.+.+.
T Consensus       201 ~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          201 INKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             ECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             EECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            999998653222211111110  0000   001357899999999999999999988664

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.66  E-value=4.4e-17  Score=118.94  Aligned_cols=119  Identities=17%  Similarity=0.089  Sum_probs=71.0

Q ss_pred             eEEEEEEcCCchhhHHHH------HhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC
Q 029920           60 YTLNIWDVGGQRTIRSYW------RNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL  133 (185)
Q Consensus        60 ~~~~~~D~~g~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~  133 (185)
                      +.+.++||||........      ...+.. +++++++|+....+.......+..........+.|+++|+||+|+....
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            589999999987654321      124456 8999999986533333222211111111122368999999999986542


Q ss_pred             CHHHHHHhcCc-c----c------------------ccC-ccceEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920          134 TPTEIAKVLNL-E----A------------------MDK-TRHWKIVGCSAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       134 ~~~~~~~~~~~-~----~------------------~~~-~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                      ...++...+.. .    .                  ... ....+++++||+++.|+++++++|.+.+..
T Consensus       188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence            22222221100 0    0                  001 122478999999999999999999887754

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.65  E-value=5.4e-17  Score=131.79  Aligned_cols=158  Identities=18%  Similarity=0.215  Sum_probs=109.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhC--CCCc---------cc----------ccCcceEEEEEEEcCeEEEEEEcCCchhhH
Q 029920           16 EMRILMVGLDNSGKTTIVLKING--EDTS---------VI----------SPTLGFNIKTVTYQKYTLNIWDVGGQRTIR   74 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~--~~~~---------~~----------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~   74 (185)
                      ..+|+|+|+.++|||||..+|..  +...         .+          .-|+......+.++++.++++||||+..|.
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~   81 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL   81 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence            35799999999999999999841  1110         01          113333444567788999999999999999


Q ss_pred             HHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHH---HHHHhcCccc-----
Q 029920           75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPT---EIAKVLNLEA-----  146 (185)
Q Consensus        75 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~---~~~~~~~~~~-----  146 (185)
                      ......++-+|++++|+|+.+.-.-+ ....|+....+    ++|.++++||+|........   ++.+.+....     
T Consensus        82 ~Ev~raL~~~DgavlVVDa~~GV~~q-T~~v~~~a~~~----~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~  156 (638)
T 3j25_A           82 AEVYRSLSVLDGAILLISAKDGVQAQ-TRILFHALRKM----GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQK  156 (638)
T ss_dssp             HHHHHHHTTCSEEECCEESSCTTCSH-HHHHHHHHHHH----TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCC
T ss_pred             HHHHHHHHHhCEEEEEEeCCCCCcHH-HHHHHHHHHHc----CCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccce
Confidence            99999999999999999999743322 23334444443    78999999999986554322   2222221100     


Q ss_pred             --------------------------------------------------ccCccceEEEeecccCCCCHHHHHHHHHHH
Q 029920          147 --------------------------------------------------MDKTRHWKIVGCSAYTGEGLLEGFDWLVQD  176 (185)
Q Consensus       147 --------------------------------------------------~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  176 (185)
                                                                        .....-.|++..||+++.|++.+++.+.+.
T Consensus       157 ~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~  236 (638)
T 3j25_A          157 VELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNK  236 (638)
T ss_dssp             CCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHS
T ss_pred             eEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcc
Confidence                                                              000123578889999999999999999876


Q ss_pred             Hh
Q 029920          177 IA  178 (185)
Q Consensus       177 ~~  178 (185)
                      +.
T Consensus       237 ~p  238 (638)
T 3j25_A          237 FY  238 (638)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.64  E-value=1.6e-16  Score=122.71  Aligned_cols=156  Identities=15%  Similarity=0.142  Sum_probs=71.0

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCccc---------ccCcceEEEEE--EEcC--eEEEEEEcCCchhhH------
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVI---------SPTLGFNIKTV--TYQK--YTLNIWDVGGQRTIR------   74 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~---------~~t~~~~~~~~--~~~~--~~~~~~D~~g~~~~~------   74 (185)
                      .-.++|+++|++|+|||||+++|++..+...         .++.......+  ...+  ..+.+||++|.....      
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            3457899999999999999999998766311         11221111111  1122  478999999975431      


Q ss_pred             -HH-------H-----------HhhhcCCC--EEEEEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           75 -SY-------W-----------RNYFEQTD--GLVWVVDSSDLRRLDDCK-MELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        75 -~~-------~-----------~~~~~~~d--~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                       ..       .           ..++..++  +++|+.+.+. .++.... .++..+ .    .+.|+|+|+||+|+...
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L-~----~~v~iIlVinK~Dll~~  182 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRL-H----EKVNIIPLIAKADTLTP  182 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHH-T----TTSEEEEEEESTTSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHH-h----ccCcEEEEEEcccCccH
Confidence             11       0           11233444  4444444331 2344333 233332 2    26899999999998653


Q ss_pred             CCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHH
Q 029920          133 LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (185)
                      ........... ..+.. .+++++++|++++.++++++..+.+.+
T Consensus       183 ~ev~~~k~~i~-~~~~~-~~i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          183 EECQQFKKQIM-KEIQE-HKIKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             HHHHHHHHHHH-HHHHH-HTCCCCCCC-----------------C
T ss_pred             HHHHHHHHHHH-HHHHH-cCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence            22222111111 11111 567889999999999999888776654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.63  E-value=4.3e-17  Score=121.40  Aligned_cols=133  Identities=17%  Similarity=0.048  Sum_probs=96.0

Q ss_pred             HHHHHHhCCCCc--ccccCcceEEEEEEE-cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc-cHHHHHHHH
Q 029920           31 TIVLKINGEDTS--VISPTLGFNIKTVTY-QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR-RLDDCKMEL  106 (185)
Q Consensus        31 tli~~l~~~~~~--~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~  106 (185)
                      +|+.+++.+.+.  .+.||++.... ... .+..+.+||+  ++.++.++..+++++|++++|+|++++. ++..+..|+
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l  108 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL  108 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence            577777776664  56788885444 222 2237899999  8888889999999999999999999987 787777777


Q ss_pred             HHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHH
Q 029920          107 DNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLV  174 (185)
Q Consensus       107 ~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (185)
                      ..+..    .++|+++|+||+|+.+....++......  .+.. . ++++++||++|.|++++|..+.
T Consensus       109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~--~~~~-~-~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEE--IYSG-L-YPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHH--HHTT-T-SCEEECCTTTCTTHHHHHHHHS
T ss_pred             HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHH--HHhh-h-CcEEEEECCCCcCHHHHHHHhc
Confidence            65533    3799999999999965322111111111  1111 1 6799999999999999998764

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.63  E-value=7.7e-15  Score=120.60  Aligned_cols=114  Identities=19%  Similarity=0.182  Sum_probs=80.6

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCC--------CC---cccc------c----CcceEEEEEEE-------cCeEEEEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGE--------DT---SVIS------P----TLGFNIKTVTY-------QKYTLNIW   65 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~--------~~---~~~~------~----t~~~~~~~~~~-------~~~~~~~~   65 (185)
                      ++..+|+|+|+.++|||||..+|...        ..   ..+.      .    |+......+.+       +++.++++
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            45678999999999999999998411        11   0111      1    22222223444       35899999


Q ss_pred             EcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           66 DVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        66 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      ||||+-.|.......++-+|++++|+|+...-..+ ....|+....+    ++|.++++||+|....
T Consensus        91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~q-T~~v~~~a~~~----~lp~i~~iNKiDr~~a  152 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQ-SETVWRQANKY----GVPRIVYVNKMDRQGA  152 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHHH----TCCEEEEEECSSSTTC
T ss_pred             eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchh-HHHHHHHHHHc----CCCeEEEEccccccCc
Confidence            99999999999999999999999999999754433 23334444443    7999999999998654

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.61  E-value=1.9e-14  Score=109.01  Aligned_cols=79  Identities=22%  Similarity=0.227  Sum_probs=55.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcC-----------------eEEEEEEcCCchhhH--
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQK-----------------YTLNIWDVGGQRTIR--   74 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~~--   74 (185)
                      ++|+++|.||+|||||+|+|++....   ....|.......+.+.+                 ..+.+|||||+....  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            68999999999999999999986632   11123333323344433                 579999999986543  


Q ss_pred             -----HHHHhhhcCCCEEEEEEeCCC
Q 029920           75 -----SYWRNYFEQTDGLVWVVDSSD   95 (185)
Q Consensus        75 -----~~~~~~~~~~d~~i~v~d~~~   95 (185)
                           .....+++.+|++++|+|+++
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCC
Confidence                 223345789999999999986

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.59  E-value=3.9e-15  Score=108.27  Aligned_cols=112  Identities=21%  Similarity=0.389  Sum_probs=89.5

Q ss_pred             cCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHH---HHHhccc-cCCCeEEEEeec-CCCCCCCCHHHHHHh
Q 029920           67 VGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELD---NLLKEER-LSGASLLILANK-QDINGALTPTEIAKV  141 (185)
Q Consensus        67 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~-~~~~~~ivv~nK-~D~~~~~~~~~~~~~  141 (185)
                      .+|+...+..|..|++++|++|||+|.+|.+.++ ....+.   .++.... ..+.|++|++|| -|+.......++.+.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~  272 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  272 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence            4578999999999999999999999999987655 444333   4443322 358999999997 589888899999999


Q ss_pred             cCcccccCccceEEEeecccCCCCHHHHHHHHHHHHhhhc
Q 029920          142 LNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI  181 (185)
Q Consensus       142 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  181 (185)
                      ++.... . +.|.+..|||.+|+|+.+.++||.+.+..+.
T Consensus       273 L~L~~l-~-r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~  310 (312)
T 3l2o_B          273 LHLNLL-N-HPWLVQDTEAETLTGFLNGIEWILEEVESKR  310 (312)
T ss_dssp             TTGGGG-C-SCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred             cCCccC-C-CcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence            988766 3 7899999999999999999999999987653

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.57  E-value=5.1e-15  Score=105.62  Aligned_cols=156  Identities=15%  Similarity=0.132  Sum_probs=84.6

Q ss_pred             HHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcc----------------eEEEEEEEc------------
Q 029920            8 RKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLG----------------FNIKTVTYQ------------   58 (185)
Q Consensus         8 ~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~----------------~~~~~~~~~------------   58 (185)
                      +......+.++|+++|++|||||||+++|+...+.. ..++.+                .....+..+            
T Consensus        30 r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  109 (226)
T 2hf9_A           30 RKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGH  109 (226)
T ss_dssp             HHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHH
T ss_pred             HHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHH
Confidence            334345578999999999999999999998653321 111111                011111100            


Q ss_pred             --------CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC
Q 029920           59 --------KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN  130 (185)
Q Consensus        59 --------~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  130 (185)
                              +..+.++|++|.-...   ..+-...+..+.++|.........  .. ...      .+.|.++|+||+|+.
T Consensus       110 ~~~~l~~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~-~~~------~~~~~iiv~NK~Dl~  177 (226)
T 2hf9_A          110 ALEDLNLDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KH-PGI------MKTADLIVINKIDLA  177 (226)
T ss_dssp             HHTTSCGGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TC-HHH------HTTCSEEEEECGGGH
T ss_pred             HHHHHhcCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hh-hhH------hhcCCEEEEeccccC
Confidence                    0134555555521100   001112344455666432111100  00 000      146789999999985


Q ss_pred             CC--CCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920          131 GA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       131 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                      +.  ....+....+...    ....+++++||++|.|++++|+++.+.+.+
T Consensus       178 ~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          178 DAVGADIKKMENDAKRI----NPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HHHTCCHHHHHHHHHHH----CTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHh----CCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            42  2333333322210    135689999999999999999999887754

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.56  E-value=3.4e-14  Score=108.11  Aligned_cols=79  Identities=16%  Similarity=0.203  Sum_probs=54.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc--c-cccCcceEEEEEEE---------------------cCeEEEEEEcCCchh
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS--V-ISPTLGFNIKTVTY---------------------QKYTLNIWDVGGQRT   72 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~--~-~~~t~~~~~~~~~~---------------------~~~~~~~~D~~g~~~   72 (185)
                      ++|+++|.+|+|||||+|+|++....  . ...|...+......                     ....+.+|||||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            68999999999999999999875321  1 11122222222222                     245799999999754


Q ss_pred             h-------HHHHHhhhcCCCEEEEEEeCCC
Q 029920           73 I-------RSYWRNYFEQTDGLVWVVDSSD   95 (185)
Q Consensus        73 ~-------~~~~~~~~~~~d~~i~v~d~~~   95 (185)
                      .       ......+++.+|++++|+|+++
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            2       2344556789999999999985

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.55  E-value=4.1e-15  Score=112.25  Aligned_cols=154  Identities=16%  Similarity=0.163  Sum_probs=88.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhC------CCCccccc----C-------------------cceEEE----------
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKING------EDTSVISP----T-------------------LGFNIK----------   53 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~------~~~~~~~~----t-------------------~~~~~~----------   53 (185)
                      ......++++|++|||||||++.+.+      ........    +                   ......          
T Consensus        52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G  131 (337)
T 2qm8_A           52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG  131 (337)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccc
Confidence            34567899999999999999999973      32211100    0                   000000          


Q ss_pred             ----------EEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEE
Q 029920           54 ----------TVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLIL  123 (185)
Q Consensus        54 ----------~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv  123 (185)
                                .+...+..+.++||||......   .....+|.+++++|....+..+.....+         ...+.+++
T Consensus       132 ~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivv  199 (337)
T 2qm8_A          132 VAAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIA  199 (337)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTH---------HHHCSEEE
T ss_pred             hHHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEE
Confidence                      0122568999999999754322   2346899999999986433211111000         12356777


Q ss_pred             eecCCCCCCCC-H----HHHHHhcCccccc-CccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          124 ANKQDINGALT-P----TEIAKVLNLEAMD-KTRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       124 ~nK~D~~~~~~-~----~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      +||+|+..... .    .++...+...... .....+++.+||+++.|++++++.|.+...
T Consensus       200 lNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          200 VNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             EECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            89999754211 1    1121111111000 001346888999999999999999988654

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.33  E-value=2.4e-12  Score=98.47  Aligned_cols=85  Identities=21%  Similarity=0.212  Sum_probs=52.4

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEc-----------------CeEEEEEEcCCchh
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQ-----------------KYTLNIWDVGGQRT   72 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g~~~   72 (185)
                      ....++|+++|.+|+|||||+|+|++....   ....|.......+.+.                 ...+.+|||||...
T Consensus        19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~   98 (396)
T 2ohf_A           19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK   98 (396)
T ss_dssp             SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence            455689999999999999999999987652   1122333334444432                 23599999999765


Q ss_pred             hHH-------HHHhhhcCCCEEEEEEeCCCcc
Q 029920           73 IRS-------YWRNYFEQTDGLVWVVDSSDLR   97 (185)
Q Consensus        73 ~~~-------~~~~~~~~~d~~i~v~d~~~~~   97 (185)
                      ...       .+..+++.+|++++|+|+++..
T Consensus        99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~  130 (396)
T 2ohf_A           99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDD  130 (396)
T ss_dssp             --------CCHHHHHHHTSSSEEEEEEC----
T ss_pred             ccchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence            433       4567789999999999998643

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.28  E-value=2.7e-12  Score=95.53  Aligned_cols=95  Identities=18%  Similarity=0.081  Sum_probs=69.2

Q ss_pred             chhhHHHHHhhhcCCCEEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC---HHHHHHhcCcc
Q 029920           70 QRTIRSYWRNYFEQTDGLVWVVDSSDLR-RLDDCKMELDNLLKEERLSGASLLILANKQDINGALT---PTEIAKVLNLE  145 (185)
Q Consensus        70 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~---~~~~~~~~~~~  145 (185)
                      ++.+..+...++.++|++++|+|++++. ++..+..|+..+..    .++|+++|+||+|+.+...   ..+....+.  
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~--  139 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYR--  139 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHH--
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHH--
Confidence            5555556667899999999999999986 88877777765433    4799999999999965421   111111111  


Q ss_pred             cccCccceEEEeecccCCCCHHHHHHHHH
Q 029920          146 AMDKTRHWKIVGCSAYTGEGLLEGFDWLV  174 (185)
Q Consensus       146 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (185)
                         . .+.+++++||++|.|++++++.+.
T Consensus       140 ---~-~g~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          140 ---D-AGYDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             ---H-TTCEEEECCTTTCTTHHHHHHHTT
T ss_pred             ---H-CCCeEEEEECCCCCCHHHHHhhcc
Confidence               1 356899999999999999998754

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.25  E-value=3e-13  Score=103.28  Aligned_cols=121  Identities=12%  Similarity=0.099  Sum_probs=72.7

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCC-----CCcccccCcceEEEE--EEEcCeEEEEEEcCCchhhH--------HHHHh
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGE-----DTSVISPTLGFNIKT--VTYQKYTLNIWDVGGQRTIR--------SYWRN   79 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~-----~~~~~~~t~~~~~~~--~~~~~~~~~~~D~~g~~~~~--------~~~~~   79 (185)
                      ...+++++|.+|+|||||+|+|.+.     .....++..+++...  +... ..+.++||||.....        .....
T Consensus       161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~  239 (369)
T 3ec1_A          161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLKI  239 (369)
T ss_dssp             TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred             ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence            3468999999999999999999876     333333333333322  2222 247999999953221        11122


Q ss_pred             hh--cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHh
Q 029920           80 YF--EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKV  141 (185)
Q Consensus        80 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~  141 (185)
                      ++  ...+.++++++....--+...     ..+......+.|+++++||.|.......+...+.
T Consensus       240 ~~~~~~i~~~~~~l~~~~~~~~g~l-----~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~  298 (369)
T 3ec1_A          240 ITPKREIHPRVYQLNEGQTLFFGGL-----ARLDYIKGGRRSFVCYMANELTVHRTKLEKADSL  298 (369)
T ss_dssp             HSCSSCCCCEEEEECTTEEEEETTT-----EEEEEEESSSEEEEEEECTTSCEEEEEGGGHHHH
T ss_pred             HhcccccCceEEEEcCCceEEECCE-----EEEEEccCCCceEEEEecCCcccccccHHHHHHH
Confidence            22  678999999988432111110     0022333446899999999998655444444433

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.24  E-value=1.9e-11  Score=96.46  Aligned_cols=155  Identities=20%  Similarity=0.173  Sum_probs=87.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHh------CCCCccccc-----C-----------cceEEEE-----------------
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKIN------GEDTSVISP-----T-----------LGFNIKT-----------------   54 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~------~~~~~~~~~-----t-----------~~~~~~~-----------------   54 (185)
                      .+...|+++|.+||||||+++.|.      +.+......     .           .+.....                 
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            345689999999999999999998      554321111     0           0011111                 


Q ss_pred             EEEcCeEEEEEEcCCchhh----HHHHHhh--hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeE-EEEeecC
Q 029920           55 VTYQKYTLNIWDVGGQRTI----RSYWRNY--FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL-LILANKQ  127 (185)
Q Consensus        55 ~~~~~~~~~~~D~~g~~~~----~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-ivv~nK~  127 (185)
                      ....++.+.++||||....    .......  .-.+|.+++|+|+.........   ...+ ..    ..|+ .+|+||+
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~-~~----~~~i~gvVlNK~  250 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAF-KD----KVDVASVIVTKL  250 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHH-HH----HHCCCCEEEECT
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHH-Hh----hcCceEEEEeCC
Confidence            0115678999999996532    1111111  2278999999999875432221   1222 11    1564 8999999


Q ss_pred             CCCCCCCH-HHHHHhcCcc--------cccC-ccceEEEeecccCCCC-HHHHHHHHHHH
Q 029920          128 DINGALTP-TEIAKVLNLE--------AMDK-TRHWKIVGCSAYTGEG-LLEGFDWLVQD  176 (185)
Q Consensus       128 D~~~~~~~-~~~~~~~~~~--------~~~~-~~~~~~~~~Sa~~~~~-i~~l~~~l~~~  176 (185)
                      |....... ..+...++..        .... ....+.+.+|+..|.| ++++++++.+.
T Consensus       251 D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          251 DGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             TSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            98754332 1222222210        0000 0111235589999999 99999988765

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.14  E-value=1.6e-11  Score=93.74  Aligned_cols=123  Identities=10%  Similarity=0.054  Sum_probs=71.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCC------CcccccCcceEEEEEEEc-CeEEEEEEcCCchhhH--------HHHHh
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGED------TSVISPTLGFNIKTVTYQ-KYTLNIWDVGGQRTIR--------SYWRN   79 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~------~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~--------~~~~~   79 (185)
                      ...+++++|.+|+|||||+|+|.+..      ....+...+++.....+. ...+.++||||.....        .....
T Consensus       159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~  238 (368)
T 3h2y_A          159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKL  238 (368)
T ss_dssp             TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSCHHHHHH
T ss_pred             ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhhHHHHHH
Confidence            34689999999999999999998753      222334444433332221 1238999999953322        11122


Q ss_pred             h--hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhc
Q 029920           80 Y--FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVL  142 (185)
Q Consensus        80 ~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~  142 (185)
                      +  ....+.+++++|....--...     ...+......+.|+++++||.|.......+...+.+
T Consensus       239 ~~~~~~i~~~~~~l~~~~~~~~g~-----l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~  298 (368)
T 3h2y_A          239 ITPTKEIKPMVFQLNEEQTLFFSG-----LARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELY  298 (368)
T ss_dssp             HSCSSCCCCEEEEECTTEEEEETT-----TEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHH
T ss_pred             hccccccCceEEEEcCCCEEEEcc-----eEEEEEecCCCceEEEEecCccccccccHHHHHHHH
Confidence            2  256788999998742111111     001222333468999999999987665555544443

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.10  E-value=3.2e-10  Score=86.89  Aligned_cols=83  Identities=19%  Similarity=0.243  Sum_probs=59.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcc----cccCcceEEEEEEEcC-----------------eEEEEEEcCCch
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSV----ISPTLGFNIKTVTYQK-----------------YTLNIWDVGGQR   71 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~----~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~   71 (185)
                      .....+++++|++|+|||||+|+|++.....    ...|.......+.+.+                 ..+.++|+||..
T Consensus        17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~   96 (392)
T 1ni3_A           17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT   96 (392)
T ss_dssp             SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence            3446799999999999999999999865421    1224444444455543                 468999999943


Q ss_pred             -------hhHHHHHhhhcCCCEEEEEEeCCC
Q 029920           72 -------TIRSYWRNYFEQTDGLVWVVDSSD   95 (185)
Q Consensus        72 -------~~~~~~~~~~~~~d~~i~v~d~~~   95 (185)
                             .+......+++.+|++++|+|+.+
T Consensus        97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                   234455667789999999999874

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.09  E-value=3.2e-10  Score=87.48  Aligned_cols=140  Identities=15%  Similarity=0.153  Sum_probs=70.4

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcc--cc-cCcceEEEEE--EE--cC--eEEEEEEcCCchhh----------
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSV--IS-PTLGFNIKTV--TY--QK--YTLNIWDVGGQRTI----------   73 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~--~~-~t~~~~~~~~--~~--~~--~~~~~~D~~g~~~~----------   73 (185)
                      +...++++|+|++|+|||||++.|+|..+..  .. ...+.....+  ..  .+  ..+.++|++|....          
T Consensus        39 ~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i  118 (427)
T 2qag_B           39 QGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPI  118 (427)
T ss_dssp             -CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHH
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHH
Confidence            4445679999999999999999999875421  11 1112122211  11  22  36889999984321          


Q ss_pred             ----HHHHHhhh-------------cC--CCE-EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC
Q 029920           74 ----RSYWRNYF-------------EQ--TDG-LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL  133 (185)
Q Consensus        74 ----~~~~~~~~-------------~~--~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~  133 (185)
                          ...+..++             ..  .|+ +.++.|...+-+...  ..+...+.    .+.|+|+|+||+|.....
T Consensus       119 ~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D--ieilk~L~----~~~~vI~Vi~KtD~Lt~~  192 (427)
T 2qag_B          119 VEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD--LVTMKKLD----SKVNIIPIIAKADAISKS  192 (427)
T ss_dssp             HHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH--HHHHHHTC----SCSEEEEEESCGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH--HHHHHHHh----hCCCEEEEEcchhccchH
Confidence                11111111             11  233 445666654322222  22223222    478999999999986553


Q ss_pred             CHHHHHHhcCcccccCccceEEEeecc
Q 029920          134 TPTEIAKVLNLEAMDKTRHWKIVGCSA  160 (185)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (185)
                      +...+...+... +.. .+++++.+|.
T Consensus       193 E~~~l~~~I~~~-L~~-~gi~I~~is~  217 (427)
T 2qag_B          193 ELTKFKIKITSE-LVS-NGVQIYQFPT  217 (427)
T ss_dssp             HHHHHHHHHHHH-HBT-TBCCCCCCC-
T ss_pred             HHHHHHHHHHHH-HHH-cCCcEEecCC
Confidence            433333332211 111 4555555553

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.02  E-value=3.5e-09  Score=81.67  Aligned_cols=159  Identities=12%  Similarity=0.193  Sum_probs=86.9

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCccccc-Cc---ceE--EEEEEEcC-eEEEEEEcCCchhh----HHH-HHhhhc
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISP-TL---GFN--IKTVTYQK-YTLNIWDVGGQRTI----RSY-WRNYFE   82 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~-t~---~~~--~~~~~~~~-~~~~~~D~~g~~~~----~~~-~~~~~~   82 (185)
                      ....++++|++|||||||+|.+.|...+.... +.   ..+  ........ ..+.++|++|....    ... ....+.
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            44589999999999999999999854321110 00   000  01112222 25789999985321    111 111234


Q ss_pred             CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC---------CCCCHHHHHHhcCcccc---cC-
Q 029920           83 QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN---------GALTPTEIAKVLNLEAM---DK-  149 (185)
Q Consensus        83 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~---------~~~~~~~~~~~~~~~~~---~~-  149 (185)
                      ..+..++ ++.....   ..+..+...+..   .+.|+++|.||.|+.         +.....++.+.+.....   .. 
T Consensus       148 ~~~~~~~-lS~G~~~---kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~  220 (413)
T 1tq4_A          148 EYDFFII-ISATRFK---KNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  220 (413)
T ss_dssp             GCSEEEE-EESSCCC---HHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCCeEE-eCCCCcc---HHHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            4465555 6665211   111112222222   268999999999853         22333433333322110   00 


Q ss_pred             -ccceEEEeecc--cCCCCHHHHHHHHHHHHhhh
Q 029920          150 -TRHWKIVGCSA--YTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       150 -~~~~~~~~~Sa--~~~~~i~~l~~~l~~~~~~~  180 (185)
                       .....++.+|+  ..+.|++++.+.+.+.+.+.
T Consensus       221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg  254 (413)
T 1tq4_A          221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  254 (413)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             CCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence             12235788999  56667999999999887654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.02  E-value=3.2e-10  Score=83.46  Aligned_cols=102  Identities=15%  Similarity=0.103  Sum_probs=68.8

Q ss_pred             EEEcCCch-hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhc
Q 029920           64 IWDVGGQR-TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVL  142 (185)
Q Consensus        64 ~~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~  142 (185)
                      +-..||+. .........++.+|+++.|+|+.+|.+...  ..+..++     .++|.++|+||+|+.+....+.+.+.+
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~   75 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF   75 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence            44678875 455666778899999999999999876542  1223332     379999999999997642222333333


Q ss_pred             CcccccCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          143 NLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       143 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      ..      .+.+++.+||+++.|++++++.+.+.+.
T Consensus        76 ~~------~g~~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           76 EN------QGIRSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             HT------TTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             Hh------cCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence            11      3457899999999999999998887765

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.01  E-value=4.3e-10  Score=85.82  Aligned_cols=101  Identities=16%  Similarity=0.114  Sum_probs=67.7

Q ss_pred             CchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC-CHHHHHHhcCcccc
Q 029920           69 GQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL-TPTEIAKVLNLEAM  147 (185)
Q Consensus        69 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-~~~~~~~~~~~~~~  147 (185)
                      ..++|......+.+.+|++++|+|++++.     ..|...+.+.  ..++|+++|+||+|+.+.. ..++..+.+.. ..
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~--~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~-~~  126 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF--VGNNKVLLVGNKADLIPKSVKHDKVKHWMRY-SA  126 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH--SSSSCEEEEEECGGGSCTTSCHHHHHHHHHH-HH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH--hCCCcEEEEEEChhcCCcccCHHHHHHHHHH-HH
Confidence            46788889999999999999999999853     1222222221  1378999999999986543 22222222111 01


Q ss_pred             cCccce---EEEeecccCCCCHHHHHHHHHHHHh
Q 029920          148 DKTRHW---KIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       148 ~~~~~~---~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      .. .+.   +++.+||++|.|++++++.+.+...
T Consensus       127 ~~-~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~  159 (368)
T 3h2y_A          127 KQ-LGLKPEDVFLISAAKGQGIAELADAIEYYRG  159 (368)
T ss_dssp             HH-TTCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             HH-cCCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence            11 223   7899999999999999999977653

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.95  E-value=7e-10  Score=84.68  Aligned_cols=102  Identities=15%  Similarity=0.117  Sum_probs=68.3

Q ss_pred             CchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccc
Q 029920           69 GQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAM  147 (185)
Q Consensus        69 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~  147 (185)
                      .+++|+.....+.+.++++++|+|++++.+  .....+..++     .+.|+++|+||+|+.+... .+...+.+.. .+
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~-~~  128 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRR-MA  128 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHH-HH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHH-HH
Confidence            478899999988899999999999998653  1111122221     2689999999999865432 2233222111 01


Q ss_pred             cCccc---eEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920          148 DKTRH---WKIVGCSAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       148 ~~~~~---~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                      .. .+   .+++.+||++|.|++++++.+.+....
T Consensus       129 ~~-~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~  162 (369)
T 3ec1_A          129 EE-LGLCPVDVCLVSAAKGIGMAKVMEAINRYREG  162 (369)
T ss_dssp             HT-TTCCCSEEEECBTTTTBTHHHHHHHHHHHHTT
T ss_pred             HH-cCCCcccEEEEECCCCCCHHHHHHHHHhhccc
Confidence            11 22   368999999999999999999876543

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.91  E-value=9.9e-10  Score=80.37  Aligned_cols=113  Identities=16%  Similarity=0.184  Sum_probs=60.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCcccc----------cCcceEEEEE--EEcC--eEEEEEEcCCchh---------
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTSVIS----------PTLGFNIKTV--TYQK--YTLNIWDVGGQRT---------   72 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~~~~----------~t~~~~~~~~--~~~~--~~~~~~D~~g~~~---------   72 (185)
                      .++++++|++|+|||||++.|++...+..+          .+.......+  ...+  ..+.++|++|...         
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            479999999999999999999875432211          1111011111  1111  3678999998321         


Q ss_pred             -hHH----HHHh--------------hhcCCCEEEEEEeCCC-cccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920           73 -IRS----YWRN--------------YFEQTDGLVWVVDSSD-LRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus        73 -~~~----~~~~--------------~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                       ...    ....              .+..++++++++|-.. +-+  .....+...+..    ..++|+|++|+|....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~--~lD~~~l~~L~~----~~~vI~Vi~K~D~lt~  155 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLR--PLDLEFMKHLSK----VVNIIPVIAKADTMTL  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCC--HHHHHHHHHHHT----TSEEEEEETTGGGSCH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCC--HHHHHHHHHHHh----cCcEEEEEeccccCCH
Confidence             000    0111              1123588899998552 222  111112222222    2899999999998664


Q ss_pred             CC
Q 029920          133 LT  134 (185)
Q Consensus       133 ~~  134 (185)
                      .+
T Consensus       156 ~e  157 (270)
T 3sop_A          156 EE  157 (270)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.81  E-value=3e-09  Score=78.28  Aligned_cols=57  Identities=21%  Similarity=0.402  Sum_probs=37.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEE--EEEcCeEEEEEEcCCch
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT--VTYQKYTLNIWDVGGQR   71 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~D~~g~~   71 (185)
                      ...++++++|.||+|||||+|+|.+......++..+.+...  +.. +..+.++||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-CCCEEEEECcCcC
Confidence            46789999999999999999999998765555554443322  222 3368999999954

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.76  E-value=1.7e-09  Score=78.78  Aligned_cols=55  Identities=29%  Similarity=0.484  Sum_probs=35.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEE--EEEcCeEEEEEEcCCchh
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT--VTYQKYTLNIWDVGGQRT   72 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~D~~g~~~   72 (185)
                      ++++++|.+|+|||||+|+|.+.......++.+.+...  +.. +..+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL-ENGVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC-TTSCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe-CCCEEEEECCCccc
Confidence            69999999999999999999988775555555433221  222 34789999999654

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.74  E-value=3.9e-09  Score=82.01  Aligned_cols=108  Identities=21%  Similarity=0.293  Sum_probs=61.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCC------CCcccc----------------------------cCcc---eEEEEE-EE
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGE------DTSVIS----------------------------PTLG---FNIKTV-TY   57 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~------~~~~~~----------------------------~t~~---~~~~~~-~~   57 (185)
                      +..|+++|++|+||||+++.|...      +.....                            .+..   .....+ ..
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~  178 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF  178 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence            457999999999999999988541      110000                            0000   000000 01


Q ss_pred             cCeEEEEEEcCCchhhHHH----HHh--hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCC-e-EEEEeecCCC
Q 029920           58 QKYTLNIWDVGGQRTIRSY----WRN--YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGA-S-LLILANKQDI  129 (185)
Q Consensus        58 ~~~~~~~~D~~g~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~-~ivv~nK~D~  129 (185)
                      .++.+.++||||.......    ...  .+..+|.+++|+|+.....   .......+ .    ... | ..+|+||+|.
T Consensus       179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~-~----~~~~~i~gvVlnK~D~  250 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF-K----EAVGEIGSIIVTKLDG  250 (432)
T ss_dssp             SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH-H----TTSCSCEEEEEECSSS
T ss_pred             hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH-h----hcccCCeEEEEeCCCC
Confidence            4578999999996543211    111  1236899999999876432   11111221 1    134 5 8899999998


Q ss_pred             CC
Q 029920          130 NG  131 (185)
Q Consensus       130 ~~  131 (185)
                      ..
T Consensus       251 ~~  252 (432)
T 2v3c_C          251 SA  252 (432)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.70  E-value=6e-08  Score=75.26  Aligned_cols=111  Identities=20%  Similarity=0.194  Sum_probs=63.7

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHh------CCCCcc-----cc-----------cCcceEEEEE-----------------
Q 029920           15 KEMRILMVGLDNSGKTTIVLKIN------GEDTSV-----IS-----------PTLGFNIKTV-----------------   55 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~------~~~~~~-----~~-----------~t~~~~~~~~-----------------   55 (185)
                      ++..|+++|++|+||||++..|.      +.+...     ..           ...+......                 
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            35679999999999999998885      222210     00           0111111110                 


Q ss_pred             EEcCeEEEEEEcCCchhhH----HHHH--hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCC
Q 029920           56 TYQKYTLNIWDVGGQRTIR----SYWR--NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI  129 (185)
Q Consensus        56 ~~~~~~~~~~D~~g~~~~~----~~~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~  129 (185)
                      ..+++.+.++||||.....    ....  .....+|.+++|+|+.....-....   ..+...    -.+..+|+||.|.
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a---~~f~~~----~~i~gVIlTKlD~  251 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA---LAFKEA----TPIGSIIVTKLDG  251 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH---HHHHHS----CTTEEEEEECCSS
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH---HHHHhh----CCCeEEEEECCCC
Confidence            0134789999999943211    1111  1234579999999998654332222   222221    2456799999998


Q ss_pred             CCC
Q 029920          130 NGA  132 (185)
Q Consensus       130 ~~~  132 (185)
                      ...
T Consensus       252 ~~~  254 (443)
T 3dm5_A          252 SAK  254 (443)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            653

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.64  E-value=3.8e-08  Score=79.72  Aligned_cols=27  Identities=22%  Similarity=0.372  Sum_probs=22.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCc
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTS   42 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~   42 (185)
                      ...++|+|+.|||||||++.+.|...+
T Consensus        45 lp~iaIvG~nGsGKSTLL~~I~Gl~~P   71 (608)
T 3szr_A           45 LPAIAVIGDQSSGKSSVLEALSGVALP   71 (608)
T ss_dssp             CCCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred             CCeEEEECCCCChHHHHHHHHhCCCCC
Confidence            356999999999999999999987533

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.63  E-value=4.9e-08  Score=78.41  Aligned_cols=59  Identities=17%  Similarity=0.239  Sum_probs=40.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-cccc-CcceEEEEEE-------EcCeEEEEEEcCCch
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISP-TLGFNIKTVT-------YQKYTLNIWDVGGQR   71 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~-t~~~~~~~~~-------~~~~~~~~~D~~g~~   71 (185)
                      ..+.++|+|+|.||+|||||+|+|.+.... .... +.+.+.....       ..+..+.++||||..
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~  102 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG  102 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence            456788999999999999999999997642 2221 2122222221       245789999999954

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.48  E-value=1.6e-07  Score=72.82  Aligned_cols=109  Identities=20%  Similarity=0.267  Sum_probs=62.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHh------CCCCcc-----cc-----------cCcceEEEEE-----------------E
Q 029920           16 EMRILMVGLDNSGKTTIVLKIN------GEDTSV-----IS-----------PTLGFNIKTV-----------------T   56 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~------~~~~~~-----~~-----------~t~~~~~~~~-----------------~   56 (185)
                      +..|+++|++|+||||++..|.      +.+...     +.           ...+......                 .
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~  176 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV  176 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence            5678999999999999998885      222210     00           0111111100                 0


Q ss_pred             EcCeEEEEEEcCCchh------hHHHHHh--hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCC
Q 029920           57 YQKYTLNIWDVGGQRT------IRSYWRN--YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQD  128 (185)
Q Consensus        57 ~~~~~~~~~D~~g~~~------~~~~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D  128 (185)
                      .++..+.++||||...      .......  .....|.+++|+|+............+..   .    -.+..+|+||.|
T Consensus       177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~---~----~~~~gVIlTKlD  249 (433)
T 3kl4_A          177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQ---A----SPIGSVIITKMD  249 (433)
T ss_dssp             TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHH---H----CSSEEEEEECGG
T ss_pred             hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhc---c----cCCcEEEEeccc
Confidence            1256889999999532      1111111  12256999999999865433333322222   1    245789999999


Q ss_pred             CCC
Q 029920          129 ING  131 (185)
Q Consensus       129 ~~~  131 (185)
                      ...
T Consensus       250 ~~a  252 (433)
T 3kl4_A          250 GTA  252 (433)
T ss_dssp             GCS
T ss_pred             ccc
Confidence            764

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.45  E-value=3.5e-08  Score=71.81  Aligned_cols=93  Identities=13%  Similarity=0.063  Sum_probs=59.6

Q ss_pred             cCCchh-hHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcc
Q 029920           67 VGGQRT-IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLE  145 (185)
Q Consensus        67 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~  145 (185)
                      .||+.. ........+..+|+++.|+|+.+|.+....  .+. ++      ++|.++|+||+|+.+....+.+...+.. 
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~l~-ll------~k~~iivlNK~DL~~~~~~~~~~~~~~~-   73 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--GVD-FS------RKETIILLNKVDIADEKTTKKWVEFFKK-   73 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--TSC-CT------TSEEEEEEECGGGSCHHHHHHHHHHHHH-
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--HHH-hc------CCCcEEEEECccCCCHHHHHHHHHHHHH-
Confidence            466543 234566678999999999999987655421  111 11      6999999999999764222233332321 


Q ss_pred             cccCccceEEEeecccCCCCHHHHHHHHHH
Q 029920          146 AMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ  175 (185)
Q Consensus       146 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (185)
                           .+.++ .+||+++.|++++++.+..
T Consensus        74 -----~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           74 -----QGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             -----TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             -----cCCeE-EEECCCCcCHHHHHHHHHH
Confidence                 23456 9999999999998877643

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.24  E-value=2e-07  Score=69.26  Aligned_cols=85  Identities=14%  Similarity=0.029  Sum_probs=56.3

Q ss_pred             hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC----HHHHHHhcCcccccCccceE
Q 029920           79 NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT----PTEIAKVLNLEAMDKTRHWK  154 (185)
Q Consensus        79 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~  154 (185)
                      ..+.++|.+++|+|+.+|..-...   +..++......++|.++|+||+|+.+...    ...+...+..      .+.+
T Consensus        82 ~~~anvD~v~~V~~~~~p~~~~~~---i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~------~g~~  152 (307)
T 1t9h_A           82 PPICNVDQAVLVFSAVQPSFSTAL---LDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRN------IGYD  152 (307)
T ss_dssp             TTEECCCEEEEEEESTTTTCCHHH---HHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHH------HTCC
T ss_pred             HHHHhCCEEEEEEeCCCCCCCHHH---HHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHh------CCCe
Confidence            357899999999999976533332   33333222234799999999999987532    2333333321      3457


Q ss_pred             EEeecccCCCCHHHHHHH
Q 029920          155 IVGCSAYTGEGLLEGFDW  172 (185)
Q Consensus       155 ~~~~Sa~~~~~i~~l~~~  172 (185)
                      ++.+||.++.|++++++.
T Consensus       153 v~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          153 VYLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             EEECCHHHHTTCTTTGGG
T ss_pred             EEEEecCCCCCHHHHHhh
Confidence            899999999988876643

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.24  E-value=4.6e-06  Score=61.71  Aligned_cols=66  Identities=17%  Similarity=0.125  Sum_probs=40.3

Q ss_pred             cCeEEEEEEcCCchh--hHH-HHH-----hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEeecCC
Q 029920           58 QKYTLNIWDVGGQRT--IRS-YWR-----NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS-LLILANKQD  128 (185)
Q Consensus        58 ~~~~~~~~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D  128 (185)
                      +++.+.++||||...  ... ...     .....+|.+++|+|+.....   .......+..     ..+ ..+|+||+|
T Consensus       179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~i~gvVlnk~D  250 (297)
T 1j8m_F          179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ-----ASKIGTIIITKMD  250 (297)
T ss_dssp             TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH-----TCTTEEEEEECGG
T ss_pred             CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh-----hCCCCEEEEeCCC
Confidence            457899999999765  321 111     12447899999999875322   2222222211     245 778999999


Q ss_pred             CCC
Q 029920          129 ING  131 (185)
Q Consensus       129 ~~~  131 (185)
                      ...
T Consensus       251 ~~~  253 (297)
T 1j8m_F          251 GTA  253 (297)
T ss_dssp             GCT
T ss_pred             CCc
Confidence            754

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.10  E-value=1.4e-05  Score=62.29  Aligned_cols=26  Identities=12%  Similarity=0.098  Sum_probs=22.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .+-.-|+|+|++++|||||+|.|.+.
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhh
Confidence            34556999999999999999999753

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.06  E-value=1.7e-06  Score=64.87  Aligned_cols=25  Identities=44%  Similarity=0.687  Sum_probs=21.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      .+.--++++|++||||||+++.|.+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag  151 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLAN  151 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999864

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.04  E-value=6.7e-07  Score=70.37  Aligned_cols=83  Identities=25%  Similarity=0.311  Sum_probs=49.0

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEE--E--EcCeEEEEEEcCCchh--hHHHH--------Hh
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTV--T--YQKYTLNIWDVGGQRT--IRSYW--------RN   79 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~--~--~~~~~~~~~D~~g~~~--~~~~~--------~~   79 (185)
                      .....|+++|.+||||||+.++|.........++..+....+  .  .......+||..|.+.  .+..+        ..
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            456789999999999999999987542211111111110000  0  0113345788888733  23332        45


Q ss_pred             hhcCCCEEEEEEeCCCc
Q 029920           80 YFEQTDGLVWVVDSSDL   96 (185)
Q Consensus        80 ~~~~~d~~i~v~d~~~~   96 (185)
                      ++...++.++|+|.++.
T Consensus       117 ~l~~~~G~~vV~D~tn~  133 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNT  133 (469)
T ss_dssp             HHHTTCCSEEEEESCCC
T ss_pred             HHHhCCCCEEEEeCCCC
Confidence            56667888999999986

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=98.03  E-value=3.8e-06  Score=65.30  Aligned_cols=110  Identities=19%  Similarity=0.241  Sum_probs=62.2

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHh-------CCCCc-----cccc-----------CcceEEE-----------------E
Q 029920           15 KEMRILMVGLDNSGKTTIVLKIN-------GEDTS-----VISP-----------TLGFNIK-----------------T   54 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~-------~~~~~-----~~~~-----------t~~~~~~-----------------~   54 (185)
                      ++..|+++|..|+||||++..|.       +.+..     ...+           ..+....                 .
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~  178 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE  178 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence            34578899999999999988875       43331     0000           0001000                 0


Q ss_pred             EEEcCeEEEEEEcCCchhhH-HHHH-----hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEeecC
Q 029920           55 VTYQKYTLNIWDVGGQRTIR-SYWR-----NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS-LLILANKQ  127 (185)
Q Consensus        55 ~~~~~~~~~~~D~~g~~~~~-~~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~  127 (185)
                      ....++.+.++||||..... ....     .....++.+++|+|+........   ....+-.     ..+ .-+|+||.
T Consensus       179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~---~~~~f~~-----~l~i~gvVlnK~  250 (433)
T 2xxa_A          179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAAN---TAKAFNE-----ALPLTGVVLTKV  250 (433)
T ss_dssp             HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHH---HHHHHHH-----HSCCCCEEEECT
T ss_pred             HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHH---HHHHHhc-----cCCCeEEEEecC
Confidence            01145789999999964331 1111     12447899999999986433222   2222211     233 34799999


Q ss_pred             CCCCC
Q 029920          128 DINGA  132 (185)
Q Consensus       128 D~~~~  132 (185)
                      |....
T Consensus       251 D~~~~  255 (433)
T 2xxa_A          251 DGDAR  255 (433)
T ss_dssp             TSSSC
T ss_pred             CCCcc
Confidence            97544

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.00  E-value=1.5e-05  Score=60.34  Aligned_cols=83  Identities=18%  Similarity=0.081  Sum_probs=51.3

Q ss_pred             hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC---HHHHHHhcCcccccCccceEEE
Q 029920           80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT---PTEIAKVLNLEAMDKTRHWKIV  156 (185)
Q Consensus        80 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  156 (185)
                      ...++|.+++|... +|..-...   +..++......++|.++|+||+|+.+...   ..++...+.     . .+.+++
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~---i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~-----~-~G~~v~  196 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNI---IDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYR-----N-IGYRVL  196 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHH---HHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHH-----T-TTCCEE
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHH---HHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHH-----h-CCCcEE
Confidence            35789999987554 55432222   22332211223788999999999976532   112222221     1 455789


Q ss_pred             eecccCCCCHHHHHHH
Q 029920          157 GCSAYTGEGLLEGFDW  172 (185)
Q Consensus       157 ~~Sa~~~~~i~~l~~~  172 (185)
                      .+||.++.|++++...
T Consensus       197 ~~Sa~~~~gl~~L~~~  212 (358)
T 2rcn_A          197 MVSSHTQDGLKPLEEA  212 (358)
T ss_dssp             ECBTTTTBTHHHHHHH
T ss_pred             EEecCCCcCHHHHHHh
Confidence            9999999999987754

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.80  E-value=5e-05  Score=51.69  Aligned_cols=24  Identities=21%  Similarity=0.239  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ...++++|++|||||||+++|.+.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHh
Confidence            356899999999999999998764

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.77  E-value=1.2e-05  Score=55.00  Aligned_cols=22  Identities=41%  Similarity=0.576  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      +++++|++|||||||++.+.+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998764

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.65  E-value=2.3e-05  Score=54.39  Aligned_cols=34  Identities=26%  Similarity=0.450  Sum_probs=21.6

Q ss_pred             HHHHhhccCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920            6 IIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus         6 ~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ++..+......-.|+++|++||||||+++.|.+.
T Consensus        19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             ---------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            3444444455567999999999999999998653

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.64  E-value=2.1e-05  Score=53.72  Aligned_cols=22  Identities=14%  Similarity=0.342  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .++++|++|||||||++.|.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999764

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.63  E-value=2.6e-05  Score=55.12  Aligned_cols=25  Identities=8%  Similarity=0.209  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGED   40 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~   40 (185)
                      ---++|+|++|||||||++.|.+..
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccC
Confidence            3468899999999999999997753

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.62  E-value=2.3e-05  Score=54.46  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      -.++++|++|||||||++.|.+.
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            36899999999999999998763

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.62  E-value=3e-05  Score=53.26  Aligned_cols=24  Identities=29%  Similarity=0.343  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .-.++++|++||||||+++.|.+.
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            346899999999999999999886

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.59  E-value=4.4e-05  Score=52.93  Aligned_cols=28  Identities=29%  Similarity=0.501  Sum_probs=22.9

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHhC
Q 029920           11 KKKEKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        11 ~~~~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      .....+..|++.|++||||||+.+.|..
T Consensus        15 ~~~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           15 VPRGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             -CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3355567899999999999999999864

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.57  E-value=3e-05  Score=53.83  Aligned_cols=22  Identities=18%  Similarity=0.308  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      -++++|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999999765

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.56  E-value=3.2e-05  Score=54.04  Aligned_cols=23  Identities=22%  Similarity=0.326  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGED   40 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~   40 (185)
                      .++++|++|||||||++.+.+..
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            57999999999999999987753

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.54  E-value=4.3e-05  Score=53.38  Aligned_cols=26  Identities=19%  Similarity=0.279  Sum_probs=22.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .....|+|+|++|||||||++.|.+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999998764

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.53  E-value=4.8e-05  Score=54.31  Aligned_cols=24  Identities=29%  Similarity=0.372  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.+-..
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~~   56 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLDK   56 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            579999999999999999998644

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.52  E-value=4.5e-05  Score=51.66  Aligned_cols=20  Identities=30%  Similarity=0.449  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 029920           18 RILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~   37 (185)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999754

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=97.52  E-value=0.00028  Score=52.54  Aligned_cols=34  Identities=15%  Similarity=0.083  Sum_probs=27.2

Q ss_pred             HHHHHhhccCceeEEEEEcCCCCChHHHHHHHhC
Q 029920            5 SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus         5 ~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ..+...-.......+.+.|+||+|||++++.++.
T Consensus        34 ~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~   67 (318)
T 3te6_A           34 LPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMD   67 (318)
T ss_dssp             HHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            3455555567778899999999999999998864

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.52  E-value=4e-05  Score=54.08  Aligned_cols=24  Identities=25%  Similarity=0.386  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGED   40 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~   40 (185)
                      -.++++|++|||||||++.|.+..
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            358999999999999999998754

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.48  E-value=5.9e-05  Score=53.45  Aligned_cols=24  Identities=25%  Similarity=0.411  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|-..
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~~   55 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLDA   55 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999998643

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.46  E-value=7.5e-05  Score=53.54  Aligned_cols=27  Identities=33%  Similarity=0.530  Sum_probs=23.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHh---CCCC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKIN---GEDT   41 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~---~~~~   41 (185)
                      ++-.|+++|++||||||+++.|.   +...
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~   55 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH   55 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence            35689999999999999999998   6544

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.44  E-value=7.1e-05  Score=53.63  Aligned_cols=24  Identities=21%  Similarity=0.325  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|-..
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~~   49 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578999999999999999988643

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.44  E-value=6e-05  Score=50.48  Aligned_cols=24  Identities=21%  Similarity=0.180  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGED   40 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~   40 (185)
                      =.++++|+.|||||||++.+.+..
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            368999999999999999988754

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.43  E-value=7.5e-05  Score=54.20  Aligned_cols=24  Identities=33%  Similarity=0.380  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|-..
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~~   57 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLEK   57 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999998643

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.43  E-value=7.9e-05  Score=51.90  Aligned_cols=26  Identities=35%  Similarity=0.478  Sum_probs=22.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .....|+++|++||||||+++.|.+.
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            44567999999999999999999875

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.42  E-value=6.2e-05  Score=50.75  Aligned_cols=23  Identities=30%  Similarity=0.445  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ..|+++|++||||||+.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999998764

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.42  E-value=8.8e-05  Score=53.01  Aligned_cols=24  Identities=21%  Similarity=0.322  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.+-..
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~~   56 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEMD   56 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCSE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            579999999999999999988643

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.42  E-value=7.8e-05  Score=54.49  Aligned_cols=24  Identities=25%  Similarity=0.349  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|-..
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~~   59 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGILK   59 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCC
Confidence            478999999999999999988643

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.42  E-value=7.7e-05  Score=52.05  Aligned_cols=26  Identities=31%  Similarity=0.325  Sum_probs=21.6

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .+...|+++|+.|||||||++.|.+.
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            34467999999999999999998764

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.42  E-value=8.3e-05  Score=52.33  Aligned_cols=24  Identities=25%  Similarity=0.243  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|-..
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~~   60 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYLK   60 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999998643

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.41  E-value=5.4e-05  Score=58.63  Aligned_cols=67  Identities=13%  Similarity=0.088  Sum_probs=37.5

Q ss_pred             cCeEEEEEEcCCchhhHH-HHH-----hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC
Q 029920           58 QKYTLNIWDVGGQRTIRS-YWR-----NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING  131 (185)
Q Consensus        58 ~~~~~~~~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  131 (185)
                      +++.+.++||||...... ...     ...-.+|.+++|+|+....   ........+...    -...-+|+||.|...
T Consensus       179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~~a~~f~~~----l~i~GVIlTKlD~~~  251 (425)
T 2ffh_A          179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDEK----VGVTGLVLTKLDGDA  251 (425)
T ss_dssp             TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH----TCCCEEEEESGGGCS
T ss_pred             CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHHHHHHHHhc----CCceEEEEeCcCCcc
Confidence            356799999999543211 111     1123589999999987532   222222222211    122567889999754

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.41  E-value=6.3e-05  Score=52.58  Aligned_cols=25  Identities=20%  Similarity=0.290  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGED   40 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~   40 (185)
                      .--|+++|++||||||+++.|.+..
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhC
Confidence            3458899999999999999997654

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.41  E-value=8.4e-05  Score=51.55  Aligned_cols=26  Identities=12%  Similarity=0.348  Sum_probs=21.6

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGED   40 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~   40 (185)
                      ..--|+++|++|||||||++.|.+..
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            34468899999999999999997643

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.41  E-value=8.3e-05  Score=53.80  Aligned_cols=24  Identities=33%  Similarity=0.479  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|-..
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~~   58 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFLK   58 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578999999999999999988643

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.40  E-value=8.9e-05  Score=56.14  Aligned_cols=24  Identities=17%  Similarity=0.338  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|++|+|||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            689999999999999999998654

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.40  E-value=0.0008  Score=46.46  Aligned_cols=69  Identities=14%  Similarity=0.068  Sum_probs=45.8

Q ss_pred             CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhcc-ccCCCeEEEEeecCCCCC
Q 029920           59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEE-RLSGASLLILANKQDING  131 (185)
Q Consensus        59 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~  131 (185)
                      .+.+.++|+|+...  ......+..+|.+++++..... + ......+..+.... ..++.++.+|+|++|...
T Consensus        75 ~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~  144 (206)
T 4dzz_A           75 DYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA  144 (206)
T ss_dssp             TSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred             CCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence            47899999998653  3444556779999999987654 3 44444444433221 134578899999999643

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.40  E-value=8.6e-05  Score=54.01  Aligned_cols=24  Identities=21%  Similarity=0.454  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|-..
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~~   62 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYLS   62 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            478999999999999999988643

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.39  E-value=0.0001  Score=53.06  Aligned_cols=24  Identities=33%  Similarity=0.277  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.+-..
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~~   60 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFYI   60 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            578999999999999999988644

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.39  E-value=0.0001  Score=52.89  Aligned_cols=24  Identities=25%  Similarity=0.243  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|-..
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~~   53 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFYQ   53 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            589999999999999999987543

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.38  E-value=9.2e-05  Score=53.75  Aligned_cols=24  Identities=25%  Similarity=0.400  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|-..
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~~   75 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLED   75 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC
Confidence            578999999999999999988643

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.38  E-value=7.5e-05  Score=51.20  Aligned_cols=21  Identities=19%  Similarity=0.360  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      .++++|++||||||+++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.38  E-value=0.0001  Score=49.52  Aligned_cols=20  Identities=30%  Similarity=0.489  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCChHHHHHHH
Q 029920           17 MRILMVGLDNSGKTTIVLKI   36 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l   36 (185)
                      ..|++.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.38  E-value=0.00011  Score=52.33  Aligned_cols=24  Identities=29%  Similarity=0.484  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.+-..
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            578999999999999999998644

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.38  E-value=0.00013  Score=55.35  Aligned_cols=33  Identities=18%  Similarity=0.400  Sum_probs=25.0

Q ss_pred             HHHHHhhccCceeEEEEEcCCCCChHHHHHHHhC
Q 029920            5 SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus         5 ~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ..+.+.....+. .++|+|++||||||+++.+.+
T Consensus       113 ~~l~~l~~~~~g-~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          113 EVFKRVSDVPRG-LVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             HHHHHHHHCSSE-EEEEECSTTSCHHHHHHHHHH
T ss_pred             HHHHHHHhCCCC-EEEEECCCCCCHHHHHHHHHh
Confidence            344554434444 799999999999999999865

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.37  E-value=9.8e-05  Score=52.87  Aligned_cols=24  Identities=29%  Similarity=0.450  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|-..
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~~   57 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578999999999999999998643

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.37  E-value=0.00011  Score=49.66  Aligned_cols=22  Identities=32%  Similarity=0.357  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ..|++.|++||||||+++.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4589999999999999999986

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.36  E-value=0.0001  Score=53.30  Aligned_cols=24  Identities=25%  Similarity=0.239  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|-..
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~~   66 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLIK   66 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            578999999999999999988643

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.35  E-value=0.0001  Score=51.10  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGED   40 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~   40 (185)
                      ...|+++|++||||||+++.|.+..
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3468999999999999999997754

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.35  E-value=0.00012  Score=53.09  Aligned_cols=23  Identities=30%  Similarity=0.268  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGED   40 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~   40 (185)
                      .++++|+.|||||||++.+.+-.
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            58999999999999999998864

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.34  E-value=0.00012  Score=52.69  Aligned_cols=24  Identities=25%  Similarity=0.569  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|-..
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            478999999999999999998744

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.34  E-value=0.00012  Score=53.63  Aligned_cols=24  Identities=29%  Similarity=0.573  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|-..
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~~   72 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYEP   72 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            578999999999999999988643

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.34  E-value=0.00011  Score=52.94  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .++++|+.|||||||++.+.|-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999986

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.34  E-value=8.4e-05  Score=52.06  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .++++|+.|||||||++.+.+.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999876

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.34  E-value=0.00012  Score=49.11  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .|++.|++||||||+++.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998643

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.34  E-value=0.00011  Score=51.14  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ..-|+++|++||||||+++.|...
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            346899999999999999998654

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.33  E-value=0.00013  Score=51.27  Aligned_cols=24  Identities=21%  Similarity=0.480  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      +...|+++|++||||||+.+.|..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998854

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.33  E-value=0.00013  Score=53.22  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|-..
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~~   70 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLYQ   70 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            579999999999999999988644

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.33  E-value=0.00015  Score=50.20  Aligned_cols=27  Identities=33%  Similarity=0.479  Sum_probs=22.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ....-.|+++|++||||||+++.|.+.
T Consensus        22 ~~~g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           22 DQKGCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             TSCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            344567999999999999999988654

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.32  E-value=0.00014  Score=50.46  Aligned_cols=22  Identities=32%  Similarity=0.234  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      +.|+++|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999987

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.32  E-value=0.00013  Score=53.05  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .++++|+.|||||||++.+.|-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999986

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.32  E-value=8.9e-05  Score=51.13  Aligned_cols=22  Identities=27%  Similarity=0.469  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .++++|++|||||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            4789999999999999998763

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.31  E-value=0.00017  Score=53.41  Aligned_cols=26  Identities=27%  Similarity=0.276  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS   42 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~   42 (185)
                      -.++++|++|||||||+|.|.+...+
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~~~  195 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGLKL  195 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred             CeEEEECCCCCcHHHHHHHhcccccc
Confidence            36799999999999999999986553

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.31  E-value=0.00013  Score=50.19  Aligned_cols=21  Identities=33%  Similarity=0.593  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChHHHHHHHhCC
Q 029920           19 ILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~~   39 (185)
                      |+|+||+|||||||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998654

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.30  E-value=0.00011  Score=54.47  Aligned_cols=24  Identities=17%  Similarity=0.242  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .=.++|+|++|||||||++.|.+-
T Consensus       126 Ge~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          126 KNCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhhh
Confidence            346899999999999999998753

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.30  E-value=0.00013  Score=52.68  Aligned_cols=24  Identities=21%  Similarity=0.369  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|-..
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~~   56 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIHR   56 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998644

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.30  E-value=0.00013  Score=52.99  Aligned_cols=24  Identities=29%  Similarity=0.416  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|-..
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~~   58 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLIE   58 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            578999999999999999988643

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.30  E-value=0.00014  Score=49.10  Aligned_cols=23  Identities=17%  Similarity=0.426  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhC
Q 029920           16 EMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      .-.|+++|++||||||+++.|.+
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            35689999999999999998864

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.28  E-value=0.00016  Score=50.67  Aligned_cols=22  Identities=36%  Similarity=0.527  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ++|++.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999843

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.28  E-value=0.00012  Score=51.50  Aligned_cols=23  Identities=22%  Similarity=0.250  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhC
Q 029920           16 EMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ...|+++|++||||||+++.|.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999865

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.28  E-value=0.00012  Score=53.19  Aligned_cols=24  Identities=29%  Similarity=0.295  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .=.++|+|+.|||||||++.+.+.
T Consensus        25 g~~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           25 MGLILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             SEEEEEECSTTCSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCccHHHHHHHHHHh
Confidence            336899999999999999998763

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.27  E-value=0.00022  Score=51.05  Aligned_cols=25  Identities=28%  Similarity=0.440  Sum_probs=22.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      .++.+|++.|++||||||+++.|..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999864

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.27  E-value=0.00013  Score=50.61  Aligned_cols=22  Identities=27%  Similarity=0.312  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      .+|+|+|++||||||+++.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999976

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.27  E-value=0.00016  Score=52.45  Aligned_cols=23  Identities=35%  Similarity=0.631  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGED   40 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~   40 (185)
                      .++++|+.|||||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999875

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.27  E-value=0.0002  Score=49.08  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhC
Q 029920           16 EMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ...|++.|++||||||+++.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999999864

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.26  E-value=0.00016  Score=50.03  Aligned_cols=23  Identities=30%  Similarity=0.432  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhC
Q 029920           16 EMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      .-.|+++|++||||||+.+.|..
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            34799999999999999999864

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.26  E-value=0.00017  Score=50.55  Aligned_cols=22  Identities=32%  Similarity=0.484  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ++|++.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999853

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.26  E-value=0.00015  Score=54.96  Aligned_cols=24  Identities=25%  Similarity=0.510  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|-..
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCchHHHHHHHHhcCCC
Confidence            478999999999999999998644

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.26  E-value=0.00051  Score=53.37  Aligned_cols=27  Identities=19%  Similarity=0.304  Sum_probs=23.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ...+--|++.||||||||+|++++++.
T Consensus       212 ~~~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          212 IKPPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            345567999999999999999999864

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.26  E-value=0.0002  Score=48.79  Aligned_cols=23  Identities=17%  Similarity=0.342  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhC
Q 029920           16 EMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ...|++.|++||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999863

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.26  E-value=5.1e-05  Score=56.29  Aligned_cols=25  Identities=20%  Similarity=0.295  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      -.++++|++|+|||||+|.|.+...
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~~  198 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPELG  198 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC---
T ss_pred             CEEEEECCCCCCHHHHHHHhccccc
Confidence            4789999999999999999988644

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.25  E-value=0.00011  Score=50.02  Aligned_cols=24  Identities=21%  Similarity=0.253  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .-.++++|++|+|||||++.+.+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999988754

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.25  E-value=9.2e-05  Score=52.53  Aligned_cols=23  Identities=22%  Similarity=0.339  Sum_probs=15.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHh-CC
Q 029920           17 MRILMVGLDNSGKTTIVLKIN-GE   39 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~-~~   39 (185)
                      -.++++|++|||||||++.|. +.
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            358999999999999999999 65

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.25  E-value=0.00016  Score=48.89  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ..|++.|++||||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999875

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.24  E-value=0.00018  Score=50.86  Aligned_cols=24  Identities=29%  Similarity=0.516  Sum_probs=20.5

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      +...|++.|++||||||+++.|..
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999863

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.24  E-value=0.00022  Score=48.78  Aligned_cols=26  Identities=35%  Similarity=0.535  Sum_probs=22.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .+...|+++|++||||||+.+.|...
T Consensus         8 ~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            8 PKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            34567999999999999999998764

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.23  E-value=0.00017  Score=53.69  Aligned_cols=27  Identities=19%  Similarity=0.143  Sum_probs=23.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ......|+|+|++|||||||++.|.+.
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence            355678999999999999999998764

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.22  E-value=0.00017  Score=50.72  Aligned_cols=24  Identities=25%  Similarity=0.385  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ....|+++|++||||||+++.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999998854

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.22  E-value=0.00014  Score=51.22  Aligned_cols=21  Identities=24%  Similarity=0.167  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      -++++|++|||||||++.+++
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999976

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.22  E-value=0.0002  Score=50.02  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      .+|+++|+|||||+|....|+.
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999864

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.22  E-value=0.0002  Score=49.00  Aligned_cols=21  Identities=24%  Similarity=0.468  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      .|++.|++||||||+++.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.21  E-value=0.0002  Score=49.44  Aligned_cols=21  Identities=33%  Similarity=0.518  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      .|++.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999999865

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.21  E-value=0.00018  Score=54.40  Aligned_cols=24  Identities=38%  Similarity=0.491  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|-..
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~~   66 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLER   66 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            478999999999999999988644

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.21  E-value=0.00065  Score=52.52  Aligned_cols=27  Identities=15%  Similarity=0.324  Sum_probs=23.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ...+--|++.||||+|||+|++++++.
T Consensus       213 i~~prGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          213 IKPPKGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             CCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCCCCCceECCCCchHHHHHHHHHHH
Confidence            345567999999999999999999864

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.20  E-value=0.00022  Score=48.72  Aligned_cols=22  Identities=18%  Similarity=0.191  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ..|++.|++||||||+++.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999854

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.19  E-value=0.00022  Score=52.52  Aligned_cols=24  Identities=29%  Similarity=0.484  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|-..
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~~   89 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGELE   89 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            579999999999999999988644

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.19  E-value=0.00019  Score=54.36  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|-..
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~   54 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIYK   54 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEcCCCchHHHHHHHHHCCCC
Confidence            478999999999999999988643

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.19  E-value=0.0002  Score=49.61  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ...|+++|++||||||+++.|...
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999998643

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.19  E-value=0.00023  Score=48.48  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhC
Q 029920           16 EMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ...|+++|++||||||+.+.|..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999854

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.19  E-value=0.00021  Score=53.39  Aligned_cols=26  Identities=19%  Similarity=0.139  Sum_probs=22.2

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ...++-|++.|++|||||||++.|.+
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999988854

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.18  E-value=0.00013  Score=54.13  Aligned_cols=24  Identities=25%  Similarity=0.296  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.+-..
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl~~  105 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRFYD  105 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTSSC
T ss_pred             EEEEECCCCchHHHHHHHHHcCCC
Confidence            689999999999999999987543

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.18  E-value=0.0002  Score=54.68  Aligned_cols=24  Identities=33%  Similarity=0.549  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|-..
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEcCCCchHHHHHHHHHcCCC
Confidence            478999999999999999988654

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.18  E-value=0.00025  Score=48.68  Aligned_cols=24  Identities=42%  Similarity=0.336  Sum_probs=20.7

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      +...|++.|++||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998864

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.18  E-value=0.0002  Score=54.32  Aligned_cols=24  Identities=29%  Similarity=0.466  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|-..
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~   54 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIYK   54 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCchHHHHHHHHhcCCC
Confidence            478999999999999999988644

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.18  E-value=0.00021  Score=51.16  Aligned_cols=25  Identities=32%  Similarity=0.298  Sum_probs=21.6

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      .....|++.|+.|||||||++.|.+
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999876

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.17  E-value=0.00025  Score=48.52  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhC
Q 029920           16 EMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      +..|++.|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998854

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.17  E-value=0.0004  Score=51.39  Aligned_cols=25  Identities=16%  Similarity=0.421  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .-.++++|++|+|||||+|.|. ...
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            3468999999999999999998 543

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.17  E-value=0.00024  Score=49.73  Aligned_cols=22  Identities=36%  Similarity=0.448  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      .+|++.|++||||||+++.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998854

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.17  E-value=0.00017  Score=52.68  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .++++|++|||||||++.+.+.
T Consensus        46 GvlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           46 GVLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3999999999999999999874

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.16  E-value=0.00029  Score=48.74  Aligned_cols=26  Identities=23%  Similarity=0.257  Sum_probs=21.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ......|++.|++||||||+.+.|..
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            44556899999999999999998863

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.16  E-value=0.0005  Score=53.28  Aligned_cols=27  Identities=22%  Similarity=0.370  Sum_probs=22.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ...+--|++.||||||||+|++++++.
T Consensus       203 ~~~prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          203 IDPPRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            344556999999999999999999864

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.16  E-value=0.00024  Score=52.36  Aligned_cols=26  Identities=23%  Similarity=0.354  Sum_probs=22.4

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ..+...|+|.|++|||||||++.|.+
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            45678899999999999999988754

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.15  E-value=0.00028  Score=48.99  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhC
Q 029920           16 EMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ...|++.|++||||||+++.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999999864

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.15  E-value=0.00023  Score=54.29  Aligned_cols=24  Identities=29%  Similarity=0.480  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|-..
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCC
Confidence            478999999999999999998644

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.15  E-value=0.00043  Score=53.75  Aligned_cols=27  Identities=22%  Similarity=0.236  Sum_probs=23.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ...+-.|++.||||||||+|++++++.
T Consensus       212 ~~~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          212 IRAPKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence            345567999999999999999999864

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.14  E-value=0.0003  Score=48.53  Aligned_cols=27  Identities=22%  Similarity=0.229  Sum_probs=22.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ..++..|+|.|++||||||+.+.|...
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence            345678999999999999999999765

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.14  E-value=0.00023  Score=54.22  Aligned_cols=24  Identities=29%  Similarity=0.470  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|-..
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~~   62 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLEE   62 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC
Confidence            478999999999999999988644

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.14  E-value=0.00028  Score=51.84  Aligned_cols=26  Identities=31%  Similarity=0.308  Sum_probs=21.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      .....-|++.|++||||||+++.|..
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34456799999999999999999864

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.14  E-value=9.1e-05  Score=50.25  Aligned_cols=52  Identities=21%  Similarity=0.246  Sum_probs=26.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhH
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR   74 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~   74 (185)
                      .++|+|++|||||||++.|.+...+.     +.....+..++..+.-+|.++...++
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~~~~-----g~~~G~I~~dg~~i~~~~~~~~d~~r   55 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPILRER-----GLRVAVVKRHAHGDFEIDKEGKDSWK   55 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHHHHT-----TCCEEEEEC------------CHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhc-----CCceEEEEEcCcccccCCccchhHHH
Confidence            68999999999999999988652211     11233445555443334444554444

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.13  E-value=0.00024  Score=53.88  Aligned_cols=24  Identities=21%  Similarity=0.300  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.+-..
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~~   79 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLER   79 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEcCCCchHHHHHHHHhcCCC
Confidence            478999999999999999988644

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.12  E-value=0.00032  Score=48.46  Aligned_cols=24  Identities=42%  Similarity=0.526  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ...|++.|++||||||+++.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            457999999999999999999765

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.11  E-value=0.00017  Score=54.77  Aligned_cols=26  Identities=23%  Similarity=0.353  Sum_probs=22.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .-+++|+|++|||||||++.|.+...
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            35799999999999999999987644

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.10  E-value=0.00018  Score=47.55  Aligned_cols=24  Identities=17%  Similarity=0.249  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .-.++++|++|+|||||++.+.+.
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            346889999999999999998764

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.10  E-value=0.0018  Score=48.99  Aligned_cols=26  Identities=31%  Similarity=0.436  Sum_probs=21.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ...-.+++.|++|+||||+++.+...
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence            44567999999999999999988753

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.10  E-value=0.00037  Score=47.60  Aligned_cols=26  Identities=38%  Similarity=0.578  Sum_probs=21.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ......|+++|.+||||||+++.|..
T Consensus        10 ~~~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           10 IEKGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            34556799999999999999998864

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.10  E-value=0.00031  Score=49.29  Aligned_cols=24  Identities=29%  Similarity=0.405  Sum_probs=20.7

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      +...|+++|.+||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998854

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.10  E-value=0.00026  Score=47.88  Aligned_cols=21  Identities=29%  Similarity=0.548  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      +|+++|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999999864

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.09  E-value=0.00035  Score=48.63  Aligned_cols=24  Identities=29%  Similarity=0.444  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      +...|++.|.+||||||+++.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999999864

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.07  E-value=0.00036  Score=48.51  Aligned_cols=23  Identities=35%  Similarity=0.355  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhC
Q 029920           16 EMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ...|++.|.+||||||+++.|..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999999864

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.06  E-value=0.00033  Score=48.57  Aligned_cols=26  Identities=27%  Similarity=0.395  Sum_probs=22.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ......|+++|++||||||+++.|.+
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34557899999999999999998865

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.06  E-value=0.0019  Score=42.14  Aligned_cols=26  Identities=12%  Similarity=0.180  Sum_probs=22.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .....|.+.|++|+|||++++.+...
T Consensus        25 ~~~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           25 KRTSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCCCcEEEECCCCccHHHHHHHHHHh
Confidence            34567999999999999999988765

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=97.06  E-value=0.0003  Score=53.88  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .++++|+.|||||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5799999999999999999875

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.06  E-value=0.00024  Score=51.21  Aligned_cols=26  Identities=31%  Similarity=0.369  Sum_probs=21.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ...+..|+++|++||||||+.+.|..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            44457899999999999999999854

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.06  E-value=0.00032  Score=52.07  Aligned_cols=26  Identities=19%  Similarity=0.138  Sum_probs=22.6

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .+...|+|+|++|||||||++.|.+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            45578999999999999999998764

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=97.05  E-value=0.00018  Score=54.25  Aligned_cols=24  Identities=25%  Similarity=0.373  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|-..
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~~   51 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFHV   51 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCccHHHHHHHHHcCCC
Confidence            478999999999999999988644

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.05  E-value=0.0004  Score=49.99  Aligned_cols=22  Identities=23%  Similarity=0.264  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHh
Q 029920           16 EMRILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~   37 (185)
                      ...|+++|++||||||+++.|.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999998

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.05  E-value=0.00067  Score=45.92  Aligned_cols=26  Identities=23%  Similarity=0.331  Sum_probs=21.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ...-.+++.|++|+|||++++.+...
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHH
Confidence            44456899999999999999887653

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.05  E-value=0.00026  Score=50.86  Aligned_cols=22  Identities=36%  Similarity=0.616  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .++++|++|+|||||++.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999999864

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.04  E-value=0.00036  Score=47.34  Aligned_cols=23  Identities=30%  Similarity=0.381  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhC
Q 029920           16 EMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ...|++.|++||||||+++.|..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            45689999999999999999863

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.04  E-value=0.00041  Score=49.22  Aligned_cols=26  Identities=27%  Similarity=0.395  Sum_probs=21.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ......|++.|.+||||||+++.|..
T Consensus        13 ~~~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           13 SPKGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            44557899999999999999998864

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.04  E-value=0.00038  Score=47.88  Aligned_cols=23  Identities=30%  Similarity=0.268  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhC
Q 029920           16 EMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ...|++.|++||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999864

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.03  E-value=0.00042  Score=46.84  Aligned_cols=23  Identities=35%  Similarity=0.320  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhC
Q 029920           16 EMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ...++++|++|||||||+.+|..
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999865

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.03  E-value=0.0004  Score=46.46  Aligned_cols=21  Identities=33%  Similarity=0.520  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      +|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999865

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.03  E-value=0.00043  Score=53.12  Aligned_cols=27  Identities=15%  Similarity=0.282  Sum_probs=22.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ...+-.|++.||||+|||+|++++++.
T Consensus       179 i~~prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          179 IAQPKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence            344567999999999999999999764

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.03  E-value=0.00032  Score=52.62  Aligned_cols=24  Identities=29%  Similarity=0.296  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|++|||||||++.+.+...
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            689999999999999999987643

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.03  E-value=0.00028  Score=47.92  Aligned_cols=24  Identities=21%  Similarity=0.194  Sum_probs=16.3

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      +...|++.|.+||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999863

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.02  E-value=0.00047  Score=47.06  Aligned_cols=23  Identities=26%  Similarity=0.257  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhC
Q 029920           16 EMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ...|++.|.+||||||+.+.|..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.01  E-value=0.0004  Score=48.96  Aligned_cols=21  Identities=33%  Similarity=0.396  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      .|++.|++||||||+++.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998854

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.01  E-value=0.00069  Score=47.77  Aligned_cols=31  Identities=16%  Similarity=0.220  Sum_probs=23.8

Q ss_pred             HHhhccCceeEEEEEcCCCCChHHHHHHHhC
Q 029920            8 RKIKKKEKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus         8 ~~~~~~~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      .........-.+++.|++|+|||++++.+..
T Consensus        44 ~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           44 KSAASGDGVQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             HHHHHTCSCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHhCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            3333333567899999999999999998864

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.01  E-value=0.00029  Score=52.19  Aligned_cols=23  Identities=35%  Similarity=0.567  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhC
Q 029920           16 EMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      .-.++++|+.||||||+++.+.+
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            45789999999999999999863

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.01  E-value=0.00035  Score=53.04  Aligned_cols=25  Identities=32%  Similarity=0.353  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      -.++|+|+.|||||||++.+.+...
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCC
Confidence            3689999999999999999987643

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.00  E-value=0.00046  Score=49.90  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhC
Q 029920           16 EMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ...|+++|.+||||||+++.|..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999999864

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.98  E-value=0.00085  Score=46.79  Aligned_cols=30  Identities=23%  Similarity=0.513  Sum_probs=23.5

Q ss_pred             HhhccCceeEEEEEcCCCCChHHHHHHHhC
Q 029920            9 KIKKKEKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus         9 ~~~~~~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ..........|+++|.+||||||+++.|..
T Consensus        18 ~~~~~~~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           18 TELRNQRGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             HHHHTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             hcccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            333345556789999999999999998865

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.98  E-value=0.0004  Score=50.05  Aligned_cols=21  Identities=33%  Similarity=0.439  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      -|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999864

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.97  E-value=0.00018  Score=54.42  Aligned_cols=24  Identities=38%  Similarity=0.517  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|-..
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~~   56 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLDV   56 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            478999999999999999998644

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.97  E-value=0.00049  Score=47.04  Aligned_cols=21  Identities=43%  Similarity=0.504  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999865

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.96  E-value=0.00052  Score=49.30  Aligned_cols=26  Identities=27%  Similarity=0.273  Sum_probs=21.4

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ..+++.|+|.|++||||||+.+.|..
T Consensus        19 ~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           19 GGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            44567899999999999999998854

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.95  E-value=0.01  Score=44.18  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .-.+++.|+||+|||+|++++...
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHHH
Confidence            357999999999999999998764

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.94  E-value=0.00036  Score=51.69  Aligned_cols=22  Identities=36%  Similarity=0.548  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      -.++++|+.||||||+++.+.+
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            3689999999999999999854

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.94  E-value=0.00059  Score=47.81  Aligned_cols=23  Identities=22%  Similarity=0.261  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhC
Q 029920           16 EMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ++.|+|.|.+||||||+++.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999875

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.94  E-value=0.00036  Score=52.35  Aligned_cols=23  Identities=35%  Similarity=0.449  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      -.++++|++|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            45899999999999999998764

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.93  E-value=0.0004  Score=52.95  Aligned_cols=23  Identities=30%  Similarity=0.336  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      =.++|+|++||||||+++.+.+.
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            35899999999999999998763

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.92  E-value=0.00059  Score=49.94  Aligned_cols=24  Identities=17%  Similarity=0.397  Sum_probs=21.4

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHh
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~   37 (185)
                      ..++.|+|.|.+||||||+.+.|.
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            346789999999999999999987

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.91  E-value=0.00068  Score=47.73  Aligned_cols=21  Identities=33%  Similarity=0.332  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      -|+++|+|||||+|....|..
T Consensus        31 iI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           31 VIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEEECCTTCCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            366789999999999998864

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.91  E-value=0.00053  Score=46.62  Aligned_cols=21  Identities=38%  Similarity=0.616  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      .|++.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998854

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.91  E-value=0.0004  Score=50.61  Aligned_cols=22  Identities=36%  Similarity=0.616  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .++++|++|+|||||++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            3999999999999999999864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.90  E-value=0.00019  Score=50.00  Aligned_cols=21  Identities=43%  Similarity=0.711  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      -|+|.|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999864

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.90  E-value=0.00059  Score=48.56  Aligned_cols=24  Identities=13%  Similarity=0.273  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      .++.|++.|++||||||+.+.|..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999863

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.89  E-value=0.00056  Score=45.93  Aligned_cols=21  Identities=33%  Similarity=0.460  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      .|++.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.89  E-value=0.00074  Score=45.57  Aligned_cols=25  Identities=24%  Similarity=0.272  Sum_probs=20.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ...-.+++.|++|+|||++++.+..
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHH
Confidence            4456789999999999999988754

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.88  E-value=0.0005  Score=54.60  Aligned_cols=23  Identities=35%  Similarity=0.229  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGED   40 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~   40 (185)
                      .++|+|++||||||+++.+.+.-
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            48999999999999999998754

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.87  E-value=0.0004  Score=54.45  Aligned_cols=26  Identities=23%  Similarity=0.390  Sum_probs=22.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGED   40 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~   40 (185)
                      .--.++|+|+.|||||||++.|++..
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            44578999999999999999997653

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.85  E-value=0.0007  Score=45.33  Aligned_cols=23  Identities=17%  Similarity=0.442  Sum_probs=19.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhC
Q 029920           16 EMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      .-.|++.|.+||||||+.+.|..
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998854

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.85  E-value=0.0034  Score=48.00  Aligned_cols=24  Identities=25%  Similarity=0.430  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ...+++.|++|+|||++++.+...
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~  171 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAE  171 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHh
Confidence            468999999999999999998654

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.85  E-value=0.0006  Score=48.32  Aligned_cols=26  Identities=27%  Similarity=0.309  Sum_probs=22.4

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .+..-|++.|+.||||||+++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            34567999999999999999998875

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.85  E-value=0.0005  Score=48.33  Aligned_cols=21  Identities=29%  Similarity=0.357  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      -++++|++|+|||||+..+++
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478899999999999999863

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.85  E-value=0.0009  Score=46.18  Aligned_cols=27  Identities=22%  Similarity=0.314  Sum_probs=22.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      -.+...|++.|.+||||||+.+.|...
T Consensus         9 ~~~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A            9 HHHHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHh
Confidence            356788999999999999999998754

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.83  E-value=0.00081  Score=45.55  Aligned_cols=23  Identities=26%  Similarity=0.553  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhC
Q 029920           16 EMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ...|++.|.+||||||+++.|.+
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999865

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.82  E-value=0.00051  Score=53.17  Aligned_cols=22  Identities=36%  Similarity=0.362  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .++|+|+.||||||+++.+.+.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999998763

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.80  E-value=0.0024  Score=47.56  Aligned_cols=21  Identities=33%  Similarity=0.585  Sum_probs=18.4

Q ss_pred             EEEEcCCCCChHHHHHHHhCC
Q 029920           19 ILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~~   39 (185)
                      +.+.|+||+|||+|+..+...
T Consensus       126 iLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          126 VIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEECSCSSSHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHh
Confidence            689999999999999998753

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.80  E-value=0.00069  Score=48.68  Aligned_cols=24  Identities=42%  Similarity=0.594  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      +..+++.|++|+||||+++.+.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            446999999999999999998753

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.78  E-value=0.00063  Score=51.37  Aligned_cols=25  Identities=24%  Similarity=0.235  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      =+++++|++|+|||||++.+.+...
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4789999999999999999988743

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.77  E-value=0.00078  Score=45.70  Aligned_cols=20  Identities=35%  Similarity=0.338  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 029920           18 RILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~   37 (185)
                      -.+|+|+.|||||||++++.
T Consensus        28 ~~~i~G~NGsGKStll~ai~   47 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAIL   47 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            46899999999999999974

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.77  E-value=0.0013  Score=45.36  Aligned_cols=22  Identities=23%  Similarity=0.276  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ..+++.|++|+|||+|+..+..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999988864

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.77  E-value=0.0006  Score=50.12  Aligned_cols=21  Identities=24%  Similarity=0.205  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      -++|+|++|+|||||+..+++
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~   57 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQAL   57 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            478999999999999998754

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.76  E-value=0.0017  Score=50.64  Aligned_cols=27  Identities=22%  Similarity=0.289  Sum_probs=23.2

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      -..+-.|++.|+||+|||+|++++++.
T Consensus       240 i~pprGILLyGPPGTGKTlLAkAiA~e  266 (467)
T 4b4t_H          240 IDPPKGILLYGPPGTGKTLCARAVANR  266 (467)
T ss_dssp             CCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred             CCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence            455667999999999999999999864

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.75  E-value=0.0006  Score=49.08  Aligned_cols=22  Identities=32%  Similarity=0.416  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      -.|+++|++||||||+.+.|.+
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999864

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.74  E-value=0.00063  Score=51.57  Aligned_cols=22  Identities=36%  Similarity=0.548  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      -.++++|+.||||||+++.|.+
T Consensus       158 ~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHh
Confidence            4689999999999999999854

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.74  E-value=0.0014  Score=42.92  Aligned_cols=26  Identities=15%  Similarity=0.266  Sum_probs=22.4

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .....|.+.|++|+|||++++.+...
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence            45567999999999999999998754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.73  E-value=0.00086  Score=53.61  Aligned_cols=24  Identities=29%  Similarity=0.410  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|...
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~~   72 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQLI   72 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            589999999999999999988543

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.72  E-value=0.001  Score=49.00  Aligned_cols=26  Identities=12%  Similarity=0.047  Sum_probs=21.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ..+.-+++.|+||+|||+|++++...
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34456778899999999999998754

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.71  E-value=0.0014  Score=45.33  Aligned_cols=21  Identities=24%  Similarity=0.474  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      .+++.|++|+|||++++.+..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999998865

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.69  E-value=0.00095  Score=53.88  Aligned_cols=24  Identities=33%  Similarity=0.361  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.+-..
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~~  394 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFYD  394 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhhccC
Confidence            689999999999999999988644

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.69  E-value=0.0011  Score=47.06  Aligned_cols=25  Identities=28%  Similarity=0.453  Sum_probs=20.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      .+..+++++|+|||||||+...|..
T Consensus         6 ~~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            6 HHHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccccceeeECCCCCCHHHHHHHHHH
Confidence            4568999999999999999998854

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.68  E-value=0.0012  Score=46.74  Aligned_cols=25  Identities=28%  Similarity=0.359  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ....|++.|++||||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4567999999999999999998653

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.67  E-value=0.0013  Score=52.62  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|...
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~~   50 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEII   50 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            579999999999999999998644

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.67  E-value=0.0017  Score=49.06  Aligned_cols=27  Identities=26%  Similarity=0.434  Sum_probs=21.9

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhC
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      +.....+|+++|++|+||||+...|.+
T Consensus        20 ~~g~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           20 EDNYRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             TTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence            344556899999999999999987643

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.67  E-value=0.00076  Score=53.12  Aligned_cols=22  Identities=45%  Similarity=0.650  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      -.++++|+.|||||||++.|.+
T Consensus       294 eVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          294 FVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCcccHHHHHHHHHH
Confidence            4689999999999999999854

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.66  E-value=0.00083  Score=46.84  Aligned_cols=21  Identities=33%  Similarity=0.289  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      -++++|++|+|||||+..+++
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            579999999999999999876

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.66  E-value=0.00083  Score=52.30  Aligned_cols=26  Identities=12%  Similarity=0.109  Sum_probs=22.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      -=+++++|++|||||||++.+.+...
T Consensus       157 Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          157 GQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcccC
Confidence            34789999999999999999987643

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.66  E-value=0.00082  Score=47.63  Aligned_cols=22  Identities=27%  Similarity=0.203  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      -++++|++|+|||||+..+++.
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5789999999999999998873

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.66  E-value=0.0015  Score=49.54  Aligned_cols=22  Identities=27%  Similarity=0.348  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .++|.|++|+||||+++.+.+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999998754

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.63  E-value=0.0012  Score=48.51  Aligned_cols=22  Identities=32%  Similarity=0.357  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999875

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.63  E-value=0.001  Score=49.60  Aligned_cols=25  Identities=32%  Similarity=0.409  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGED   40 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~   40 (185)
                      ..-++|.|+.|||||||++.+.+..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            3457899999999999999998653

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.61  E-value=0.00089  Score=51.09  Aligned_cols=25  Identities=32%  Similarity=0.302  Sum_probs=21.4

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ...-.++++|++|+|||||++.+.+
T Consensus       167 ~~~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          167 PKKRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHh
Confidence            3445789999999999999999985

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.61  E-value=0.00087  Score=52.72  Aligned_cols=22  Identities=18%  Similarity=0.256  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      =.++++|+.|||||||++.+.+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhc
Confidence            3578999999999999999864

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.61  E-value=0.0014  Score=52.82  Aligned_cols=24  Identities=29%  Similarity=0.307  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.+-..
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~~  394 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFYD  394 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            689999999999999999987543

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.61  E-value=0.0014  Score=46.46  Aligned_cols=26  Identities=35%  Similarity=0.427  Sum_probs=21.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ......|+++|++||||||+.+.|..
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34556899999999999999998864

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.61  E-value=0.0014  Score=53.10  Aligned_cols=24  Identities=25%  Similarity=0.426  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|...
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll~  128 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQK  128 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            589999999999999999988544

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.60  E-value=0.00099  Score=50.07  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ..+++.|++|+||||+++.+.+
T Consensus        37 ~~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           37 PHLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3499999999999999998866

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.58  E-value=0.0011  Score=53.71  Aligned_cols=24  Identities=38%  Similarity=0.386  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.+-..
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~~~  406 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRFYD  406 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Confidence            689999999999999999988644

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.58  E-value=0.0032  Score=49.01  Aligned_cols=24  Identities=13%  Similarity=0.157  Sum_probs=19.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHh
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~   37 (185)
                      .+-.-|+|+|+.++|||+|+|.|.
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCchhHHHHHHH
Confidence            345567899999999999999654

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.58  E-value=0.0014  Score=43.30  Aligned_cols=19  Identities=32%  Similarity=0.538  Sum_probs=16.8

Q ss_pred             EEEEcCCCCChHHHHHHHh
Q 029920           19 ILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~   37 (185)
                      .+|+|+.|+||||++.++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4788999999999999864

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.58  E-value=0.0015  Score=49.00  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ..+++.|++|+||||+++.+.+.
T Consensus        47 ~~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           47 PHLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            34899999999999999998754

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.56  E-value=0.0016  Score=46.76  Aligned_cols=24  Identities=21%  Similarity=0.285  Sum_probs=20.9

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      .+..+++.|++|+|||++++.+..
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            445689999999999999999875

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.56  E-value=0.0012  Score=48.33  Aligned_cols=25  Identities=24%  Similarity=0.377  Sum_probs=21.7

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ..-.+++.|++|+|||++++.+.+.
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHH
Confidence            3467999999999999999998764

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.55  E-value=0.0015  Score=47.53  Aligned_cols=26  Identities=31%  Similarity=0.411  Sum_probs=22.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .....+++.|++|+|||++++.+...
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            44567999999999999999999754

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.55  E-value=0.044  Score=40.50  Aligned_cols=26  Identities=27%  Similarity=0.244  Sum_probs=18.6

Q ss_pred             CceeEE-EEEcCCCCChHHHHHHHhCC
Q 029920           14 EKEMRI-LMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        14 ~~~~~i-~v~G~~~~GKttli~~l~~~   39 (185)
                      .+..++ .+-|++|+|||++++.+...
T Consensus        45 ~~~~~~~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           45 GKIPHIILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             TCCCSEEEECSSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence            333344 44566999999999998754

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.54  E-value=0.0026  Score=48.16  Aligned_cols=33  Identities=36%  Similarity=0.450  Sum_probs=24.5

Q ss_pred             HHHhhccCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920            7 IRKIKKKEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus         7 ~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      +.........-.+.+.|++|+|||++++.+...
T Consensus        36 l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~   68 (384)
T 2qby_B           36 IRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNE   68 (384)
T ss_dssp             HHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence            333333444558999999999999999988653

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.53  E-value=0.019  Score=42.78  Aligned_cols=26  Identities=38%  Similarity=0.304  Sum_probs=21.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .....+++.|++|+|||++++.+...
T Consensus        53 ~~~~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           53 ECLDHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             SCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence            34457999999999999999998654

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.53  E-value=0.0029  Score=45.80  Aligned_cols=27  Identities=33%  Similarity=0.493  Sum_probs=23.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ......+++.|++|+|||+++..+...
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            455678999999999999999998764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.52  E-value=0.002  Score=52.27  Aligned_cols=24  Identities=33%  Similarity=0.423  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|...
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll~  142 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQLI  142 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhCCCC
Confidence            589999999999999999988544

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.52  E-value=0.0027  Score=44.50  Aligned_cols=22  Identities=27%  Similarity=0.326  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      -.+++.|++|+||||+++.+..
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.50  E-value=0.0021  Score=51.34  Aligned_cols=24  Identities=38%  Similarity=0.386  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|...
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998644

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.50  E-value=0.0023  Score=44.53  Aligned_cols=21  Identities=19%  Similarity=0.321  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      .+++.|+||+||||++.+++.
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999888764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.50  E-value=0.00095  Score=53.85  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.+-..
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~~~  392 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRFYD  392 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            689999999999999999987544

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.49  E-value=0.0014  Score=48.29  Aligned_cols=26  Identities=27%  Similarity=0.359  Sum_probs=21.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ...-.+++.|++|+|||++++.+.+.
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHH
Confidence            34456999999999999999998764

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.48  E-value=0.0022  Score=51.25  Aligned_cols=24  Identities=38%  Similarity=0.475  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|...
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~~  337 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVEE  337 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            579999999999999999998644

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.45  E-value=0.0012  Score=47.70  Aligned_cols=27  Identities=22%  Similarity=0.201  Sum_probs=22.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ..+...|++.|..||||||+++.|...
T Consensus        21 ~~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           21 GTRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             --CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHh
Confidence            345678999999999999999988754

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.45  E-value=0.002  Score=47.43  Aligned_cols=25  Identities=32%  Similarity=0.579  Sum_probs=20.5

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      .....+++.|++|+|||++++.+..
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            4455799999999999999986643

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.45  E-value=0.0013  Score=53.22  Aligned_cols=24  Identities=25%  Similarity=0.253  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.+-..
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~~  394 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRLID  394 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcc
Confidence            689999999999999999987543

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.41  E-value=0.0014  Score=47.70  Aligned_cols=21  Identities=19%  Similarity=0.324  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      -++|+|++|+|||||+..+++
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999988764

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.40  E-value=0.0024  Score=47.30  Aligned_cols=26  Identities=23%  Similarity=0.402  Sum_probs=21.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ..+.-|+|+|++|||||||...|...
T Consensus         8 ~~~~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A            8 SLPKAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCccCHHHHHHHHHHh
Confidence            33456889999999999999998643

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.40  E-value=0.0026  Score=51.56  Aligned_cols=24  Identities=38%  Similarity=0.475  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|...
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~~  407 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVEE  407 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            479999999999999999998644

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.37  E-value=0.0015  Score=48.53  Aligned_cols=24  Identities=25%  Similarity=0.325  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .-.+.+.|++|+|||||++.+.+.
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            356899999999999999998753

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.36  E-value=0.0023  Score=47.01  Aligned_cols=24  Identities=33%  Similarity=0.498  Sum_probs=20.9

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ....+++.|++|+|||++++.+..
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999865

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.34  E-value=0.0026  Score=47.59  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ..+++.|++|+||||+++.+.+.
T Consensus        59 ~~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           59 PHMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            34999999999999999988654

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.33  E-value=0.0025  Score=44.01  Aligned_cols=21  Identities=19%  Similarity=0.406  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      .|++.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999855

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.33  E-value=0.0014  Score=49.56  Aligned_cols=26  Identities=35%  Similarity=0.514  Sum_probs=21.6

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ...-.+++.|++|+|||||++.+.+.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            34457899999999999999998753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.32  E-value=0.002  Score=52.18  Aligned_cols=24  Identities=29%  Similarity=0.563  Sum_probs=21.4

Q ss_pred             EEEEcCCCCChHHHHHHHhCCCCc
Q 029920           19 ILMVGLDNSGKTTIVLKINGEDTS   42 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~~~~~   42 (185)
                      ++++|+.|||||||++.+.|-..+
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~p  404 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALKP  404 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCCC
Confidence            799999999999999999886544

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.30  E-value=0.0027  Score=49.11  Aligned_cols=25  Identities=20%  Similarity=0.302  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ...-|+++|++||||||+.+.|...
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3456889999999999999998753

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.30  E-value=0.0014  Score=48.16  Aligned_cols=24  Identities=21%  Similarity=0.297  Sum_probs=17.6

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      +.+.|+|.|++||||||+.+.|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999988754

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.30  E-value=0.0018  Score=48.92  Aligned_cols=22  Identities=23%  Similarity=0.129  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      -+.|+|++|||||||+..+++.
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999998765

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.29  E-value=0.0048  Score=51.55  Aligned_cols=26  Identities=31%  Similarity=0.410  Sum_probs=22.5

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ..+-.|++.|+||+|||+|++++++.
T Consensus       236 ~~p~GILL~GPPGTGKT~LAraiA~e  261 (806)
T 3cf2_A          236 KPPRGILLYGPPGTGKTLIARAVANE  261 (806)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            34557999999999999999999875

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.28  E-value=0.0021  Score=47.42  Aligned_cols=22  Identities=32%  Similarity=0.489  Sum_probs=19.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHh
Q 029920           16 EMRILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~   37 (185)
                      .-.++++|++|+||||++..|.
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA  126 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLA  126 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4478999999999999998874

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.27  E-value=0.0023  Score=48.65  Aligned_cols=19  Identities=21%  Similarity=0.462  Sum_probs=17.1

Q ss_pred             EEEEcCCCCChHHHHHHHh
Q 029920           19 ILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~   37 (185)
                      .+|+|+.|+|||||+++++
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5689999999999999975

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.27  E-value=0.0024  Score=45.25  Aligned_cols=20  Identities=25%  Similarity=0.333  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 029920           18 RILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~   37 (185)
                      -++++|++|+|||||+..++
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999977663

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.26  E-value=0.0029  Score=47.10  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ...+++.|+||+|||++++++...
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            457999999999999999998754

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=96.26  E-value=0.021  Score=42.13  Aligned_cols=24  Identities=29%  Similarity=0.324  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ....+++.|++|+|||++++.+..
T Consensus        37 ~~~~vll~G~~GtGKT~la~~i~~   60 (324)
T 1hqc_A           37 PLEHLLLFGPPGLGKTTLAHVIAH   60 (324)
T ss_dssp             CCCCCEEECCTTCCCHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999999865

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.21  E-value=0.0033  Score=44.72  Aligned_cols=24  Identities=25%  Similarity=0.257  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ...|++.|..||||||+++.|...
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            356899999999999999998654

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.21  E-value=0.0031  Score=43.65  Aligned_cols=25  Identities=20%  Similarity=0.396  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      ..|+++|++|+|||||...|.....
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g~   59 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRGH   59 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCC
Confidence            4689999999999999999987643

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.20  E-value=0.0034  Score=46.16  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      -.+++.|++|+|||++++.+.+.
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            36999999999999999988653

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.20  E-value=0.0027  Score=47.34  Aligned_cols=23  Identities=22%  Similarity=0.475  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ..|+|+|++|||||||...|...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999988653

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.17  E-value=0.0048  Score=46.54  Aligned_cols=22  Identities=27%  Similarity=0.508  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      -.+++.|+||+|||++++.+..
T Consensus        71 ~~vLl~GppGtGKT~la~~la~   92 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQ   92 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.14  E-value=0.003  Score=44.73  Aligned_cols=24  Identities=29%  Similarity=0.334  Sum_probs=17.5

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      +..-|++.|++||||||+++.|..
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998854

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.13  E-value=0.0031  Score=47.37  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      .-|+|+|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999988864

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.12  E-value=0.0034  Score=46.48  Aligned_cols=22  Identities=36%  Similarity=0.563  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      -.++++|++|+||||++..|.+
T Consensus       105 ~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          105 FVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHH
Confidence            4588999999999999988753

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.12  E-value=0.0044  Score=48.37  Aligned_cols=27  Identities=22%  Similarity=0.240  Sum_probs=22.4

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ......+++.|++|+||||+++.+...
T Consensus        47 ~~~~~~vLL~GppGtGKTtlAr~ia~~   73 (447)
T 3pvs_A           47 AGHLHSMILWGPPGTGKTTLAEVIARY   73 (447)
T ss_dssp             HTCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHH
Confidence            334457999999999999999998764

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.11  E-value=0.0045  Score=48.61  Aligned_cols=26  Identities=19%  Similarity=0.305  Sum_probs=21.5

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ...-.++++|+||+|||++++.+...
T Consensus       199 ~~~~~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred             cCCCCeEEECCCCCCHHHHHHHHHHH
Confidence            44557899999999999999987543

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.11  E-value=0.0027  Score=50.87  Aligned_cols=25  Identities=20%  Similarity=0.519  Sum_probs=21.7

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      +...++++|++|||||||++.|.+.
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHh
Confidence            4467999999999999999998764

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.08  E-value=0.0032  Score=43.92  Aligned_cols=23  Identities=26%  Similarity=0.465  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhC
Q 029920           16 EMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      +..|++.|++||||||+.+.|..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998865

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=96.08  E-value=0.0054  Score=44.41  Aligned_cols=34  Identities=26%  Similarity=0.300  Sum_probs=25.2

Q ss_pred             HHHHHhhccC-c-eeEEEEEcCCCCChHHHHHHHhC
Q 029920            5 SIIRKIKKKE-K-EMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus         5 ~~~~~~~~~~-~-~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      +++....+.. . .-.+++.|+||+|||.++.++..
T Consensus        91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~  126 (267)
T 1u0j_A           91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence            3445544443 2 34599999999999999999876

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.05  E-value=0.0024  Score=56.32  Aligned_cols=23  Identities=26%  Similarity=0.377  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGED   40 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~   40 (185)
                      +|+++|+.|||||||++.|.+-.
T Consensus      1107 ~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A         1107 TLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp             EEEEECSTTSSTTSHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCc
Confidence            79999999999999999997643

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.04  E-value=0.0028  Score=50.19  Aligned_cols=22  Identities=36%  Similarity=0.616  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .++++|++|+|||+|++.+.+.
T Consensus        66 GvLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	185
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-37
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	2e-35
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-33
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-33
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-29
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	1e-28
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	2e-28
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-27
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	1e-25
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	3e-25
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	6e-25
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	6e-24
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	8e-24
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	2e-22
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	4e-22
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	1e-19
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	2e-19
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	2e-19
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	3e-19
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	6e-19
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	7e-19
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-18
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	6e-18
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	8e-18
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	1e-16
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	2e-16
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	6e-16
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	1e-15
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	1e-14
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	4e-14
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	4e-14
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	3e-13
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	3e-13
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	1e-12
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	1e-12
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	2e-12
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	3e-12
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	5e-12
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	8e-12
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	1e-11
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	9e-11
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	2e-10
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	4e-10
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	1e-09
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	2e-09
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	2e-09
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	2e-09
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	6e-09
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	7e-09
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-08
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	2e-08
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	3e-08
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	4e-08
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	8e-08
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	2e-06
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	2e-06
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	3e-06
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	4e-06
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	8e-06
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	1e-05
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	2e-05
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	2e-05
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	6e-05
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	9e-05
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	2e-04
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	3e-04
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	5e-04
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	0.001
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	0.003

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score =  126 bits (316), Expect = 1e-37
 Identities = 91/177 (51%), Positives = 132/177 (74%), Gaps = 2/177 (1%)

Query: 2   GLLSIIRKIKKK-EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY 60
           GLLSI+RK+K   ++E+RIL++GLDN+GKTT++ ++  ED S I+PT GFNIK+V  Q +
Sbjct: 1   GLLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGF 60

Query: 61  TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL 120
            LN+WD+GGQR IR YWR+YFE TD L++V+DS+D +R ++   EL  LL+EE+LS   +
Sbjct: 61  KLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPV 120

Query: 121 LILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
           LI ANKQD+  A   +EIA+ LNL  + + R W+I  CSA TGEG+ +G +W+ +++
Sbjct: 121 LIFANKQDLLTAAPASEIAEGLNLHTI-RDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  120 bits (301), Expect = 2e-35
 Identities = 80/176 (45%), Positives = 116/176 (65%), Gaps = 1/176 (0%)

Query: 5   SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNI 64
           S+  K+    KE+RIL++GLD +GKTTI+ ++   +     PT+GFN++T++Y+   LN+
Sbjct: 6   SMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNV 65

Query: 65  WDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILA 124
           WD+GGQ +IR YWR Y+  T  +++VVDS+D  R+     EL  +L+EE L  A+LL+ A
Sbjct: 66  WDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFA 125

Query: 125 NKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
           NKQD  GAL+ +E++K LNL  + K R W IV  SA  GEG+ EG DWL+  I   
Sbjct: 126 NKQDQPGALSASEVSKELNLVEL-KDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 180

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score =  115 bits (287), Expect = 1e-33
 Identities = 104/166 (62%), Positives = 136/166 (81%), Gaps = 1/166 (0%)

Query: 15  KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR 74
           +E+R+LM+GLDN+GKTTI+ K NGED   ISPTLGFNIKT+ ++ + LNIWDVGGQ+++R
Sbjct: 1   RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 60

Query: 75  SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT 134
           SYWRNYFE TDGL+WVVDS+D +R+ DC+ EL +LL EERL+GA+LLI ANKQD+ GAL+
Sbjct: 61  SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 120

Query: 135 PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
              I + L L+++ ++ HW+I GCSA TGE LL G DWL+ DI+SR
Sbjct: 121 CNAIQEALELDSI-RSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  114 bits (286), Expect = 3e-33
 Identities = 72/163 (44%), Positives = 105/163 (64%), Gaps = 1/163 (0%)

Query: 15  KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR 74
           KEMRILM+GLD +GKTTI+ K+    +    PT+GFN++TVTY+    N+WDVGGQ  IR
Sbjct: 11  KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 70

Query: 75  SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT 134
             WR+Y+  T GL++VVD +D  R+D+ + EL  ++ +  +  A +LI ANKQD+  A+ 
Sbjct: 71  PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 130

Query: 135 PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
           P EI + L L  + + R+W +    A +G+GL EG  WL  + 
Sbjct: 131 PHEIQEKLGLTRI-RDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score =  105 bits (261), Expect = 2e-29
 Identities = 65/175 (37%), Positives = 105/175 (60%), Gaps = 2/175 (1%)

Query: 3   LLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTL 62
           L + I ++    +E ++++VGLDN+GKTTI+ + +  +    SPT+G N++ +       
Sbjct: 3   LFTRIWRLFNH-QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRF 61

Query: 63  NIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLI 122
            +WD+GGQ ++RS W  Y+  T+ ++ VVDS+D  R+   + EL  +L  E L  A LLI
Sbjct: 62  LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLI 121

Query: 123 LANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
            ANKQD+   +T  EI++ L L ++ K   W I  C A TGEGL +G +W++  +
Sbjct: 122 FANKQDVKECMTVAEISQFLKLTSI-KDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score =  103 bits (256), Expect = 1e-28
 Identities = 53/184 (28%), Positives = 93/184 (50%), Gaps = 11/184 (5%)

Query: 5   SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNI 64
           S+++ +   +K  +++ +GLDN+GKTT++  +  +      PTL    + +T    T   
Sbjct: 2   SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTT 61

Query: 65  WDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILA 124
           +D+GG    R  W+NY    +G+V++VD +D  RL + K ELD+L+ +E ++   +LIL 
Sbjct: 62  FDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILG 121

Query: 125 NKQDINGALTPTEIAKVLNLEAMD-----------KTRHWKIVGCSAYTGEGLLEGFDWL 173
           NK D   A++   + ++  L                 R  ++  CS    +G  EGF W+
Sbjct: 122 NKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWM 181

Query: 174 VQDI 177
            Q I
Sbjct: 182 AQYI 185

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  102 bits (253), Expect = 2e-28
 Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 6/164 (3%)

Query: 18  RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYW 77
           ++L +GLDN+GKTT++  +  +  + + PT     + +         +D+GG    R  W
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 61

Query: 78  RNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTE 137
           ++YF + +G+V++VD++D  R D+ ++ELD L     L     +IL NK D   A++  E
Sbjct: 62  KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 121

Query: 138 IAKVLNL------EAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ 175
           +   L L      + ++  R  ++  CS     G LE F WL Q
Sbjct: 122 LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 99.3 bits (246), Expect = 2e-27
 Identities = 74/161 (45%), Positives = 105/161 (65%), Gaps = 1/161 (0%)

Query: 17  MRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSY 76
           MRILMVGLD +GKTTI+ K+   +     PT+GFN++TV Y+  +  +WDVGGQ  IR  
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60

Query: 77  WRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPT 136
           WR+YF+ T GL++VVDS+D  R+++ + EL  +L E+ L  A LL+ ANKQD+  A+   
Sbjct: 61  WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 120

Query: 137 EIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
           EI   L L ++ + R+W I    A +G+GL EG DWL   +
Sbjct: 121 EITDKLGLHSL-RHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 95.1 bits (235), Expect = 1e-25
 Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 2/164 (1%)

Query: 15  KEMRILMVGLDNSGKTTIVLKI-NGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTI 73
           +EM + +VGL  SGKTT V  I +G+    + PT+GFN++ +T    T+ +WD+GGQ   
Sbjct: 1   EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRF 60

Query: 74  RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL 133
           RS W  Y      +V++VD++D  +++  K EL NLL + +L G  +L+L NK+D+ GAL
Sbjct: 61  RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL 120

Query: 134 TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
              E+ + +NL A+   R       S    + +     WL+Q  
Sbjct: 121 DEKELIEKMNLSAIQD-REICCYSISCKEKDNIDITLQWLIQHS 163

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 94.1 bits (233), Expect = 3e-25
 Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 11/170 (6%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKT----VTYQKYTLNIWDVGGQR 71
           M+IL++G    GK+ ++++ +  +       T+G + K     +  +K  L IWD  GQ 
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 72  TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131
             R+    Y+    G++ V D +D R   +   +    + E     A LL++ NK D+  
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMET 121

Query: 132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
            +   +       EA+ K      +  SA   + + E F  L + I  +I
Sbjct: 122 RVVTADQG-----EALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 166

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.3 bits (231), Expect = 6e-25
 Identities = 33/170 (19%), Positives = 68/170 (40%), Gaps = 10/170 (5%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQR 71
            ++L++G    GKT ++ +       S    T+G  F I+T+    ++  L IWD  GQ 
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 72  TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131
             R+    Y+    G++ V D ++ +  D+ +  + N+ +        +++       + 
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126

Query: 132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
                E       E +      K +  SA     +   F  L +DI +++
Sbjct: 127 RQVSKERG-----EKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 90.5 bits (223), Expect = 6e-24
 Identities = 75/166 (45%), Positives = 107/166 (64%), Gaps = 1/166 (0%)

Query: 15  KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR 74
           +EMRIL++GLD +GKTTI+ ++   +     PT+GFN++TVTY+     +WD+GG  +IR
Sbjct: 4   REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 63

Query: 75  SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT 134
            YWR Y+  TD +++VVDS D  R+   K EL  +L+EE L  A L++ ANKQD+  A+T
Sbjct: 64  PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 123

Query: 135 PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
            +E+A  L L    K R W+I   SA  G GL E  +WLV+ + SR
Sbjct: 124 SSEMANSLGLP-ALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 168

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 91.4 bits (226), Expect = 8e-24
 Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 13/125 (10%)

Query: 14  EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTI 73
               R+L++G   SGK+TIV ++       +  T G         K   +++DVGGQR  
Sbjct: 4   RATHRLLLLGAGESGKSTIVKQMRILH---VVLTSGIFETKFQVDKVNFHMFDVGGQRDE 60

Query: 74  RSYWRNYFEQTDGLVWVVDSS----------DLRRLDDCKMELDNLLKEERLSGASLLIL 123
           R  W   F     +++VV SS             RL +      ++     L   S+++ 
Sbjct: 61  RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 120

Query: 124 ANKQD 128
            NKQD
Sbjct: 121 LNKQD 125

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.3 bits (215), Expect = 2e-22
 Identities = 38/201 (18%), Positives = 75/201 (37%), Gaps = 34/201 (16%)

Query: 15  KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR 74
           +E+++L++G   SGK+T + ++     S + PT G        Q     + DVGGQR+ R
Sbjct: 1   RELKLLLLGTGESGKSTFIKQMRIIHGSGV-PTTGIIEYPFDLQSVIFRMVDVGGQRSER 59

Query: 75  SYWRNYFEQTDGLVWVVDSSDLRR----------LDDCKMELDNLLKEERLSGASLLILA 124
             W + FE    ++++V  S+  +          +++ K     ++       +S+++  
Sbjct: 60  RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL 119

Query: 125 NKQDINGALTPTE----------------------IAKVLNLEAMDKTRHWKIVGCSAYT 162
           NK+D+                              I K+      D  +        A  
Sbjct: 120 NKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATD 179

Query: 163 GEGLLEGFDWLVQDIASRIYL 183
            E +   F   V+D   ++ L
Sbjct: 180 TENIRFVFAA-VKDTILQLNL 199

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.1 bits (212), Expect = 4e-22
 Identities = 36/177 (20%), Positives = 69/177 (38%), Gaps = 10/177 (5%)

Query: 14  EKEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIK----TVTYQKYTLNIWDVG 68
              ++IL++G    GK++++L+  +      ++ T+G + K    +V   K  L IWD  
Sbjct: 5   LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTA 64

Query: 69  GQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQD 128
           GQ   R+   +Y+    G++ V D +           L+ L      +    +++ NK D
Sbjct: 65  GQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID 124

Query: 129 INGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIYLLD 185
                               +      +  SA T +G+   F+ LV+ I     L +
Sbjct: 125 KENREVDRN-----EGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWE 176

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.9 bits (196), Expect = 1e-19
 Identities = 35/180 (19%), Positives = 65/180 (36%), Gaps = 19/180 (10%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTYQ------------KYT 61
           +++L +G    GKTT + +  + +       T+G  F  K V Y             K  
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 62  LNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLL 121
           L +WD  GQ   RS    +F    G + + D +  +   + +  +  L          ++
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 122 ILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
           ++ NK D+       E         +           SA TG+ + +  + L+  I  R+
Sbjct: 126 LIGNKADLPDQREVNER----QARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 181

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.6 bits (195), Expect = 2e-19
 Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 12/125 (9%)

Query: 15  KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR 74
           + ++IL++G   SGK+T + ++         PT G +      +     + DVGGQR+ R
Sbjct: 1   RLVKILLLGAGESGKSTFLKQMRIIHGQD--PTKGIHEYDFEIKNVPFKMVDVGGQRSER 58

Query: 75  SYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKMELDNLLKEERLSGASLLILA 124
             W   F+    ++++V SS+            RL +     + ++     S  S+++  
Sbjct: 59  KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFL 118

Query: 125 NKQDI 129
           NK D+
Sbjct: 119 NKTDL 123

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.8 bits (193), Expect = 2e-19
 Identities = 31/167 (18%), Positives = 64/167 (38%), Gaps = 11/167 (6%)

Query: 17  MRILMVGLDNSGKTTIVLK------INGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQ 70
            ++++VG    GKT ++++      + G   S +       +  V   K  L +WD  GQ
Sbjct: 7   FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 66

Query: 71  RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130
              RS    Y+     L+ + D ++    D+ +  L  + +  +   A +L+       +
Sbjct: 67  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 126

Query: 131 GALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
             +   E       E + K      +  SA TG  +   F  + +++
Sbjct: 127 ERVVKREDG-----EKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 78.8 bits (193), Expect = 3e-19
 Identities = 39/195 (20%), Positives = 75/195 (38%), Gaps = 36/195 (18%)

Query: 15  KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR 74
           +E+++L++G   SGK+TIV ++            G      T++     ++DVGGQR+ R
Sbjct: 1   REVKLLLLGAGESGKSTIVKQMKIIHE----AGTGIVETHFTFKDLHFKMFDVGGQRSER 56

Query: 75  SYWRNYFEQTDGLVWVVDSSDLR----------RLDDCKMELDNLLKEERLSGASLLILA 124
             W + FE    +++ V  SD            R+ +     D++   +  +  S+++  
Sbjct: 57  KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFL 116

Query: 125 NKQ-----------------DINGALTPTEIA-----KVLNLEAMDKTRHWKIVGCSAYT 162
           NK+                 +  G+ T  E A     +  +L     T+        A  
Sbjct: 117 NKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATD 176

Query: 163 GEGLLEGFDWLVQDI 177
            + +   FD +   I
Sbjct: 177 TKNVQFVFDAVTDVI 191

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 77.6 bits (190), Expect = 6e-19
 Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 10/166 (6%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKT----VTYQKYTLNIWDVGGQR 71
            +IL++G  + GKT+ + +  +   T     T+G + K        ++  L IWD  GQ 
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65

Query: 72  TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131
             R+    Y+    G + + D ++    +  +     +        A +L++ NK D+  
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW-DNAQVLLVGNKCDME- 123

Query: 132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
                 +        +     ++    SA     + + F+ LV  I
Sbjct: 124 ---DERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.0 bits (191), Expect = 7e-19
 Identities = 36/170 (21%), Positives = 70/170 (41%), Gaps = 10/170 (5%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG--FNIKTVTY--QKYTLNIWDVGGQR 71
            ++L++G    GK+ ++L+  +   T+    T+G  F IKTV    +   L IWD  GQ 
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66

Query: 72  TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131
             R+   +Y+  + G++ V D +D    +  KM L  + +    +   LL+       + 
Sbjct: 67  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 126

Query: 132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
            +   ++AK               +  SA     + + F  + + I   +
Sbjct: 127 RVVEYDVAKE-----FADANKMPFLETSALDSTNVEDAFLTMARQIKESM 171

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.5 bits (187), Expect = 1e-18
 Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 10/170 (5%)

Query: 17  MRILMVGLDNSGKTTIVLKI-----NGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQR 71
            + L++G   +GK+ ++ +        +    I    G  I  V  +   L IWD  GQ 
Sbjct: 6   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65

Query: 72  TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131
             RS  R+Y+    G + V D +  R   +         +        +++  NK+D++ 
Sbjct: 66  RFRSVTRSYYRGAAGALLVYDITS-RETYNALTNWLTDARMLASQNIVIILCGNKKDLDA 124

Query: 132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
               T +          +      +  SA TGE + E F    + I ++I
Sbjct: 125 DREVTFL----EASRFAQENELMFLETSALTGENVEEAFVQCARKILNKI 170

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.8 bits (185), Expect = 6e-18
 Identities = 34/152 (22%), Positives = 57/152 (37%), Gaps = 8/152 (5%)

Query: 19  ILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTY----QKYTLNIWDVGGQRTIR 74
           +L VGL +SGKT + +++          ++  +                I   G +    
Sbjct: 3   VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62

Query: 75  SYWRNYFEQTDGLVWVVDSSDLRR-LDDCKMELDNLLKEERLSGAS--LLILANKQDING 131
                +      +V+VVDS+  +R + D    L  +L +      S  LLI  NKQDI  
Sbjct: 63  QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 122

Query: 132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTG 163
           A +   I + L  E ++  R  +    S    
Sbjct: 123 AKSAKLIQQQLEKE-LNTLRVTRSAAPSTLDS 153

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (182), Expect = 8e-18
 Identities = 30/166 (18%), Positives = 59/166 (35%), Gaps = 10/166 (6%)

Query: 17  MRILMVGLDNSGKTTIVLKING---EDTSVISPTLGFNIKTVTY--QKYTLNIWDVGGQR 71
            +I+++G    GKT +V +            +  + F IKTV    +K  L IWD  GQ 
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65

Query: 72  TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131
             RS  ++Y+   + L+   D +           L  + +       ++L+         
Sbjct: 66  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 125

Query: 132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
                + A+        + +    +  SA   + + + F  L   +
Sbjct: 126 REVSQQRAE-----EFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (174), Expect = 1e-16
 Identities = 30/170 (17%), Positives = 61/170 (35%), Gaps = 10/170 (5%)

Query: 17  MRILMVGLDNSGKTTIVLKI-----NGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQR 71
            +++++G    GK+ ++ +      N E  S I          V  +     IWD  GQ 
Sbjct: 5   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 64

Query: 72  TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131
             R     Y+    G + V D +     ++ +  L  L ++   S   ++++ NK D+  
Sbjct: 65  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKEL-RDHADSNIVIMLVGNKSDLRH 123

Query: 132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
                         A  +  +   +  SA     + E F  ++ +I   +
Sbjct: 124 LRAVPTD----EARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIV 169

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.7 bits (172), Expect = 2e-16
 Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 10/166 (6%)

Query: 17  MRILMVGLDNSGKTTIVLKI-----NGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQR 71
            + +++G    GK+ ++ +        +    I    G  I  V+ QK  L IWD  GQ 
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64

Query: 72  TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131
             R+  R+Y+    G + V D +     +     L +  +        ++++ NK D+  
Sbjct: 65  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDA-RNLTNPNTVIILIGNKADLEA 123

Query: 132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
               T        +   +      +  SA TGE + + F    + I
Sbjct: 124 QRDVTYEE----AKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.6 bits (169), Expect = 6e-16
 Identities = 30/167 (17%), Positives = 62/167 (37%), Gaps = 8/167 (4%)

Query: 15  KEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG---FNIKTVTYQKYTLNIWDVGGQ 70
           +E +++++G    GK+ + ++ + G       PT+         V      L I D  G 
Sbjct: 2   REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61

Query: 71  RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130
               S    Y +   G + V    + +   D K   D +++ +R     ++++ NK D  
Sbjct: 62  EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD-- 119

Query: 131 GALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
             L            A+ +      +  SA +   + E F  +V+ +
Sbjct: 120 --LESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (167), Expect = 1e-15
 Identities = 34/170 (20%), Positives = 68/170 (40%), Gaps = 10/170 (5%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKT----VTYQKYTLNIWDVGGQR 71
            + +++G    GK+ ++L+  +     V   T+G         +  ++  L IWD  GQ 
Sbjct: 4   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63

Query: 72  TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131
           + RS  R+Y+    G + V D +     +     L++  ++   S   ++++ NK D+  
Sbjct: 64  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDA-RQHSSSNMVIMLIGNKSDLES 122

Query: 132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
                        EA  +      +  SA T   + E F    ++I  +I
Sbjct: 123 RRDVKRE----EGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 168

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 66.5 bits (161), Expect = 1e-14
 Identities = 31/167 (18%), Positives = 65/167 (38%), Gaps = 8/167 (4%)

Query: 18  RILMVGLDNSGKTTIVLK-INGEDTSVISPTLG---FNIKTVTYQKYTLNIWDVGGQRTI 73
           +++MVG    GK+ + L+ +  E      PT          +  ++  ++I D  GQ   
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65

Query: 74  RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL 133
            +   NYF   +G + V   +++          + +L+ +       L++ NK D+    
Sbjct: 66  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 125

Query: 134 TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
             +        +      +   V  SA T   + + F  L+++I +R
Sbjct: 126 QVSVEEA----KNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (156), Expect = 4e-14
 Identities = 29/167 (17%), Positives = 68/167 (40%), Gaps = 9/167 (5%)

Query: 15  KEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG---FNIKTVTYQKYTLNIWDVGGQ 70
            E ++++VG    GK+ + ++ I         PT+         +  +   L+I D  GQ
Sbjct: 2   TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61

Query: 71  RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130
               +    Y    +G + V   ++ +  +D     + + + +      ++++ NK D+ 
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121

Query: 131 GALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
                +  A+      + ++     +  SA T +G+ + F  LV++I
Sbjct: 122 ARTVESRQAQ-----DLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.7 bits (156), Expect = 4e-14
 Identities = 33/166 (19%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKTVTYQKY----TLNIWDVGGQR 71
           ++++++G    GK++IVL+ ++ +      PT+G    T             IWD  GQ 
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 72  TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131
              S    Y+      + V D +  +     +  +  L ++        L+  NK D+  
Sbjct: 64  RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALV-GNKIDMLQ 122

Query: 132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
                ++A+    E + + +       SA TGE + + F  + + I
Sbjct: 123 EGGERKVAREEG-EKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 3e-13
 Identities = 29/166 (17%), Positives = 61/166 (36%), Gaps = 10/166 (6%)

Query: 17  MRILMVGLDNSGKTTIVLKI-----NGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQR 71
            +++++G    GKT++VL+      N +  + +  +       +  ++  L IWD  GQ 
Sbjct: 4   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 63

Query: 72  TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131
              +    Y+  ++G + V D +D       K  +  L K         ++         
Sbjct: 64  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 123

Query: 132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
                +       E+  ++   K    SA   +G+ E F  L + +
Sbjct: 124 RHVSIQ-----EAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 164

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 3e-13
 Identities = 34/175 (19%), Positives = 63/175 (36%), Gaps = 12/175 (6%)

Query: 13  KEKEMRILMVGLDNSGKTTIVLKI-----NGEDTSVISPTLGFNIKTVTYQKYTLNIWDV 67
           K    +++++G    GK++++ +      + +    I          V     T+ IWD 
Sbjct: 3   KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 62

Query: 68  GGQRTIRSYWRNYFEQTDGLV---WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILA 124
            GQ   RS    ++  +D  +    V DS   + L + K E       +       +IL 
Sbjct: 63  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 122

Query: 125 NKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179
           NK DI+     TE A+            +     SA     +   F+  V+ + +
Sbjct: 123 NKIDISERQVSTEEAQAW----CRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 1e-12
 Identities = 28/167 (16%), Positives = 64/167 (38%), Gaps = 7/167 (4%)

Query: 15  KEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIK---TVTYQKYTLNIWDVGGQ 70
           +E +++++G    GK+ + ++ + G       PT+  + +    V  Q+  L I D  G 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61

Query: 71  RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130
               +    Y +   G   V   +     +D +   + +L+ +      ++++ NK D+ 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121

Query: 131 GALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
                 +           +  +   +  SA +   + E F  LV+ I
Sbjct: 122 DERVVGKEQGQ---NLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 1e-12
 Identities = 32/165 (19%), Positives = 67/165 (40%), Gaps = 10/165 (6%)

Query: 18  RILMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKTVTYQ----KYTLNIWDVGGQRT 72
           +++ +G  + GKT+++ + +     +    T+G +  + T         L +WD  GQ  
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 73  IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132
            RS   +Y   +   V V D +++         +D++ + ER S   ++++ NK D    
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVGNKTD---- 116

Query: 133 LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
           L       +   E   K  +   +  SA  G  + + F  +   +
Sbjct: 117 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.5 bits (145), Expect = 2e-12
 Identities = 30/169 (17%), Positives = 63/169 (37%), Gaps = 12/169 (7%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG----FNIKTVTYQKYTLNIWDVGGQR 71
           ++++++G    GKT+++ + +N + ++    T+G         V  +  T+ IWD  GQ 
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 72  TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERL---SGASLLILANKQD 128
             +S    ++   D  V V D +            D  L +           ++L NK D
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 129 INGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
           +      T+ A+           +      SA     + + F  + ++ 
Sbjct: 123 LENRQVATKRAQ----AWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 167

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.4 bits (145), Expect = 3e-12
 Identities = 33/180 (18%), Positives = 70/180 (38%), Gaps = 13/180 (7%)

Query: 18  RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYW 77
            I++ G  NSGKT+++  +  +       +    +    Y    + + D  G   +R   
Sbjct: 5   SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKLRYKL 63

Query: 78  RNYFEQ----TDGLVWVVDSSDL-RRLDDCKMELDNL---LKEERLSGASLLILANKQDI 129
            +Y +       GL+++VDS+   ++L      L ++    +    +G  +LI  NK ++
Sbjct: 64  SDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 123

Query: 130 NGALTPTEIAKVLN--LEAMDKTRHWKI--VGCSAYTGEGLLEGFDWLVQDIASRIYLLD 185
             A  P++I   L   ++ + + R   +  V       +      D L      +   L+
Sbjct: 124 FTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGFKFANLE 183

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 5e-12
 Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 8/167 (4%)

Query: 15  KEMRILMVGLDNSGKTTIVLK-ING---EDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQ 70
           +  ++++VG    GK+ + ++ I      D           I +V      L+I D  GQ
Sbjct: 5   ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQ 64

Query: 71  RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130
               +    Y     G + V   +D +  ++       +L+ +      ++++ NK D+ 
Sbjct: 65  EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 124

Query: 131 GALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
                          A   + H      SA     + E F+ LV+ +
Sbjct: 125 SQRQVPRS----EASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 167

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 8e-12
 Identities = 27/170 (15%), Positives = 54/170 (31%), Gaps = 10/170 (5%)

Query: 13  KEKEMRILMVGLDNSGKTTIVLKI-----NGEDTSVISPTLGFNIKTVTYQKYTLNIWDV 67
           K  + +++++G    GK+++VL+      +    S I          +        IWD 
Sbjct: 3   KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDT 62

Query: 68  GGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127
            GQ    S    Y+      + V D ++       K  +  L ++   +    L      
Sbjct: 63  AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 122

Query: 128 DINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
             N      + A+               +  SA T   + E F  + + +
Sbjct: 123 LANKRAVDFQEAQS-----YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.5 bits (140), Expect = 1e-11
 Identities = 29/170 (17%), Positives = 67/170 (39%), Gaps = 11/170 (6%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLGFN-----IKTVTYQKYTLNIWDVGGQ 70
           ++++++G    GKT+++ + +N + +     T+G +     +     +  T+ +WD  GQ
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 71  RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS---LLILANKQ 127
              +S    ++   D  V V D ++    ++ K   D  L    ++       +IL NK 
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 128 DINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
           D     +   +++    E         +   SA     +   F+ + +  
Sbjct: 123 DAEE--SKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 170

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.8 bits (133), Expect = 9e-11
 Identities = 29/170 (17%), Positives = 59/170 (34%), Gaps = 10/170 (5%)

Query: 15  KEMRILMVGLDNSGKTTIVLKI-----NGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGG 69
           +E+++ ++G    GK++I+ +      +      I  +          + +   IWD  G
Sbjct: 3   RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 62

Query: 70  QRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
               R+    Y+  +   + V D +        K  +  L ++       + I  NK D+
Sbjct: 63  LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVREL-RQHGPPSIVVAIAGNKCDL 121

Query: 130 NGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179
                  E     + +    + H   V  SA     + E F  + + I S
Sbjct: 122 TDVREVMER----DAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 167

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 2e-10
 Identities = 29/178 (16%), Positives = 59/178 (33%), Gaps = 14/178 (7%)

Query: 13  KEKEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKTVTYQK---YTLNIWDVG 68
             + ++ ++VG    GKT +++            PT+  N             L +WD  
Sbjct: 2   SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61

Query: 69  GQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQD 128
           GQ          + QTD  +           ++ + +    ++        ++++  K D
Sbjct: 62  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLD 120

Query: 129 INGALTPTEIAKVLNLEAMDKTRHWKI---------VGCSAYTGEGLLEGFDWLVQDI 177
           +       E  K   L  +   +   +         + CSA T  GL   FD  ++ +
Sbjct: 121 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.9 bits (128), Expect = 4e-10
 Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 11/166 (6%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKTVTY----QKYTLNIWDVGGQR 71
           +++++VG    GK++++ +   G  T     T+G +          +   L +WD  GQ 
Sbjct: 3   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62

Query: 72  TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131
              +  + Y+      V V  ++D    +      +       +      ++ NK D+  
Sbjct: 63  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREK--VVAEVGDIPTALVQNKIDLLD 120

Query: 132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
                        E + K    +    S      + E F +L +  
Sbjct: 121 DSCIKNE----EAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.7 bits (125), Expect = 1e-09
 Identities = 27/171 (15%), Positives = 68/171 (39%), Gaps = 13/171 (7%)

Query: 15  KEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKT----VTYQKYTLNI-WDVG 68
           +  +I+++G  N GKT +  +   G        T+G + +     +  ++  + +    G
Sbjct: 1   RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 60

Query: 69  GQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQD 128
            +R  +S  ++Y+     +V+V D +++         ++   +    +    +++ NK D
Sbjct: 61  QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 120

Query: 129 INGA-LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178
           +  A   PT++A     +    T    +   SA       +  + +   +A
Sbjct: 121 LRSAIQVPTDLA-----QKFADTHSMPLFETSAKNPND-NDHVEAIFMTLA 165

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 2e-09
 Identities = 28/168 (16%), Positives = 66/168 (39%), Gaps = 8/168 (4%)

Query: 14  EKEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG---FNIKTVTYQKYTLNIWDVGG 69
           +++ R+++VG    GK+ + ++ I     +   PT+         +  +   L+I D  G
Sbjct: 3   QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAG 62

Query: 70  QRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129
           Q    +    Y    +G + V   +D    ++       +L+ +      ++++ NK D+
Sbjct: 63  QEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADL 122

Query: 130 NGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
           +     T+       + + +      +  SA     + + F  LV+ I
Sbjct: 123 DHQRQVTQEEG----QQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 2e-09
 Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 13/165 (7%)

Query: 18  RILMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKTVTYQ----KYTLNIWDVGGQRT 72
           ++++VG   +GKTT V + + GE       TLG  +  + +         N+WD  GQ  
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64

Query: 73  IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132
                  Y+ Q    + + D +      +      +L++        +++  NK DI   
Sbjct: 65  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIVLCGNKVDIKDR 122

Query: 133 LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
               +           + ++ +    SA +     + F WL + +
Sbjct: 123 KVKAKS------IVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 2e-09
 Identities = 34/174 (19%), Positives = 60/174 (34%), Gaps = 14/174 (8%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLG-FNIKTVTYQ--KYTLNIWDVGGQRT 72
           ++ ++VG    GKT +++   N        PT+      +VT    +Y L ++D  GQ  
Sbjct: 10  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 69

Query: 73  IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132
                   +  TD  +      +     + K E    LKE        L++  + D+   
Sbjct: 70  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDD 128

Query: 133 ------LTPTEIAKVLNLEAMDKTRHWKIVG---CSAYTGEGLLEGFDWLVQDI 177
                 L   +   +   +     +         CSA T +GL   FD  +  I
Sbjct: 129 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 182

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 6e-09
 Identities = 28/169 (16%), Positives = 62/169 (36%), Gaps = 7/169 (4%)

Query: 16  EMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIK---TVTYQKYTLNIWDVGGQR 71
           + R+ + G    GK+++VL+ + G       PT+    +   +      TL I D  G  
Sbjct: 2   DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSH 61

Query: 72  TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131
              +  R    +    + V   +  + L++ K   + + + +    +  ++L   +    
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
                + ++    EA+ +T     +  SA     + E F  L+     R
Sbjct: 122 PSREVQSSEA---EALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 167

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 7e-09
 Identities = 31/174 (17%), Positives = 61/174 (35%), Gaps = 14/174 (8%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLGFN---IKTVTYQKYTLNIWDVGGQRT 72
            ++++VG    GKT +++     +   V  PT+  N      V  ++  L +WD  G   
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62

Query: 73  IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132
                   +  TD ++          L++   +    +K        ++++ NK+D+   
Sbjct: 63  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 121

Query: 133 LTPTEIAKVLNL------EAMDKTRHWKIVG---CSAYTGEGLLEGFDWLVQDI 177
                    +        E  D        G   CSA T +G+ E F+   +  
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 175

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.7 bits (117), Expect = 1e-08
 Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 9/167 (5%)

Query: 16  EMRILMVGLDNSGKTTIVLKING----EDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQR 71
             ++++VG    GK+ + ++        D              +  Q   L++ D  GQ 
Sbjct: 4   TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQE 63

Query: 72  TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131
              +    Y    DG + V   +D    +        +L+ +      ++++ANK D   
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVD--- 120

Query: 132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE-GLLEGFDWLVQDI 177
            L           + M    +   +  SA      + + F  LV+ I
Sbjct: 121 -LMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 166

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 2e-08
 Identities = 25/168 (14%), Positives = 57/168 (33%), Gaps = 11/168 (6%)

Query: 18  RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTY---QKYTLNIWDVGGQRTIR 74
           ++L++G    GK+ +     G +    +   G           ++ +L ++D+  Q   R
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 62

Query: 75  SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT 134
               +     D  V V   +D    +        L +  +     ++++ NK D+  +  
Sbjct: 63  WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSRE 122

Query: 135 PTEIAKVLNLEAMDKTRHWKI--VGCSAYTGEGLLEGFDWLVQDIASR 180
            +        E       +    +  SA     +   F+ +V+ I  R
Sbjct: 123 VSVD------EGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 164

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 3e-08
 Identities = 33/176 (18%), Positives = 60/176 (34%), Gaps = 14/176 (7%)

Query: 15  KEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKTVTY---QKYTLNIWDVGGQ 70
           + ++ ++VG    GKT +++     +  S   PT+  N         + YTL ++D  GQ
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61

Query: 71  RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130
                     + QTD  +           ++ K E               L++  + D+ 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVK-EKWVPEITHHCPKTPFLLVGTQIDLR 120

Query: 131 GALTPTEIAKVLNLEAMDKT---------RHWKIVGCSAYTGEGLLEGFDWLVQDI 177
              +  E       + +            +  K V CSA T +GL   FD  +   
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 4e-08
 Identities = 27/169 (15%), Positives = 72/169 (42%), Gaps = 8/169 (4%)

Query: 13  KEKEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKTVTY---QKYTLNIWDVG 68
           + K  +I ++G  + GK+++ ++ + G+      PT+      +     Q+Y L + D  
Sbjct: 1   QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTA 60

Query: 69  GQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQD 128
           GQ     + + Y    +G + V   + ++  +  K+    LL         ++++ NK+D
Sbjct: 61  GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 120

Query: 129 INGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
           ++     +        +A+ ++ +   +  SA   +  ++ F  ++ + 
Sbjct: 121 LHMERVISYEEG----KALAESWNAAFLESSAKENQTAVDVFRRIILEA 165

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 47.3 bits (111), Expect = 8e-08
 Identities = 33/173 (19%), Positives = 70/173 (40%), Gaps = 29/173 (16%)

Query: 17  MRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQ--------------KYTL 62
           +R+++VG  N GK+T++ ++  ED ++++   G     ++ +                  
Sbjct: 1   LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60

Query: 63  NIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLI 122
              D+  +  I    +   E+ D +++V+D+S     +D K+      K          +
Sbjct: 61  ETNDLVERLGIERTLQE-IEKADIVLFVLDASSPLDEEDRKILERIKNKRYL-------V 112

Query: 123 LANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ 175
           + NK D+   +   EI   L  +         +V  SA  GEGL +  + + +
Sbjct: 113 VINKVDVVEKINEEEIKNKLGTD-------RHMVKISALKGEGLEKLEESIYR 158

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 43.6 bits (101), Expect = 2e-06
 Identities = 18/159 (11%), Positives = 51/159 (32%), Gaps = 1/159 (0%)

Query: 17  MRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSY 76
           M++++ G  N+GK++++  + G + ++++   G     +    +   +            
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61

Query: 77  WRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPT 136
             +  E+   +       +        ++       +        I      +   +   
Sbjct: 62  ASDEVERIG-IERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRN 120

Query: 137 EIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ 175
           +         M +     ++  SA TGEG+    + L Q
Sbjct: 121 KADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQ 159

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 2e-06
 Identities = 32/170 (18%), Positives = 68/170 (40%), Gaps = 10/170 (5%)

Query: 16  EMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKTVTY---QKYTLNIWDVGGQR 71
           E+++ + G    GK+ +V++ +         PTL    +       +  ++ I D    +
Sbjct: 2   EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDT-AGQ 60

Query: 72  TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131
                   +    +G V V D +D    ++     + L + ++    +L+++ NK D++ 
Sbjct: 61  EDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120

Query: 132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL-EGFDWLVQDIASR 180
           +   +        E +          CSA TGEG + E F  L +++  R
Sbjct: 121 SRQVSTEEG----EKLATELACAFYECSACTGEGNITEIFYELCREVRRR 166

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.5 bits (101), Expect = 3e-06
 Identities = 28/178 (15%), Positives = 59/178 (33%), Gaps = 15/178 (8%)

Query: 17  MRILMVGLDNSGKTTIVLK-INGEDTSVISPTLGFN---IKTVTYQKYTLNIWDVGGQRT 72
            +I++VG    GKT ++             PT+  N      +  Q+  L++WD  G   
Sbjct: 3   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 73  IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132
             +     +  +D ++   D S    LD    +      +E      +L++  K D+   
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKG-EIQEFCPNTKMLLVGCKSDLRTD 121

Query: 133 LTPTEIAKVLNLEAMDKTRHWKI---------VGCSAYTGE-GLLEGFDWLVQDIASR 180
           ++            +   +   +         + CSA   E  + + F        ++
Sbjct: 122 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 179

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 4e-06
 Identities = 26/170 (15%), Positives = 57/170 (33%), Gaps = 11/170 (6%)

Query: 18  RILMVGLDNSGKTTIVLKING------EDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQR 71
           R++++G    GK+T+     G       D  V+          V  +  T+ + D+   +
Sbjct: 5   RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 64

Query: 72  TIRSYWRNYFEQTDGLVWVVDSSDL-RRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130
               +  ++  Q      +V S       +        L +  +     ++++ NK D+ 
Sbjct: 65  GENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 124

Query: 131 GALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
                +         A       K +  SA     + E F+ +V+ +  R
Sbjct: 125 RCREVSVSEG----RACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 170

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 41.9 bits (97), Expect = 8e-06
 Identities = 28/173 (16%), Positives = 58/173 (33%), Gaps = 17/173 (9%)

Query: 18  RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY----TLNIWDVGGQRTI 73
            + +VG  N+GK++++  +      +           +   +        + D+ G    
Sbjct: 3   DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEG 62

Query: 74  RSYWRNYFEQT-------DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANK 126
            S  +    +          L++V+D++D        +  +    +  L     L+  NK
Sbjct: 63  ASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNK 122

Query: 127 QDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179
            D+        +A  L  E         ++  SA TG GL    + L   + S
Sbjct: 123 VDLLEEEAVKALADALARE------GLAVLPVSALTGAGLPALKEALHALVRS 169

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 41.6 bits (96), Expect = 1e-05
 Identities = 22/168 (13%), Positives = 47/168 (27%), Gaps = 5/168 (2%)

Query: 12  KKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLG----FNIKTVTYQKYTLNIWDV 67
           +K     + +VG  N GK+T++  + G   + ISP            +T  +  +   D 
Sbjct: 1   EKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDT 60

Query: 68  GGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127
            G          + +Q         ++ +  +D             R     +  +    
Sbjct: 61  PGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILL 120

Query: 128 DINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ 175
             N         + +     +     +    SA     + E    L+ 
Sbjct: 121 VGNKLDAAKYPEEAMK-AYHELLPEAEPRMLSALDERQVAELKADLLA 167

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 41.2 bits (95), Expect = 2e-05
 Identities = 25/183 (13%), Positives = 52/183 (28%), Gaps = 22/183 (12%)

Query: 19  ILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWR 78
           I+  G  N GK+T++ ++ G+         G   K +  +     I D+ G   +    +
Sbjct: 3   IIFAGRSNVGKSTLIYRLTGKKVRR-GKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPK 61

Query: 79  NYFEQTDGLVW--------------------VVDSSDLRRLDDCKMELDNLLKEE-RLSG 117
              E+    +                            R     ++ +D    +  R   
Sbjct: 62  EVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 121

Query: 118 ASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
              ++  NK D    +           E          +  SA  G+ +    + + + I
Sbjct: 122 IPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI 181

Query: 178 ASR 180
             R
Sbjct: 182 RER 184

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 41.2 bits (95), Expect = 2e-05
 Identities = 24/170 (14%), Positives = 53/170 (31%), Gaps = 22/170 (12%)

Query: 19  ILMVGLDNSGKTTIVLKINGEDTSVISPTLG---FNIKTVTYQKYTLNIWDVGG------ 69
           I +VG  N GK+T++ K+ G+  S+ S         I  +  +     I+          
Sbjct: 8   IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67

Query: 70  ----QRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILAN 125
                R +     +     + +++VV+ +     D+  +      K   +   + +    
Sbjct: 68  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ 127

Query: 126 KQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ 175
           ++                     +     IV  SA TG  +      + +
Sbjct: 128 EK---------ADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRK 168

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 6e-05
 Identities = 24/170 (14%), Positives = 57/170 (33%), Gaps = 3/170 (1%)

Query: 12  KKEKEMRILMVGLDNSGKTTIVLK-INGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQ 70
           +   E+R+ ++G   SGK++++ + + G    +         K +     T  +      
Sbjct: 1   RSIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEA 60

Query: 71  RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130
               + +  + +    +  + D +  + +     +L +L  E R   A  L+    +   
Sbjct: 61  GAPDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISA 120

Query: 131 GALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180
            +      A+   L A  K          A  G  +   F  + Q + + 
Sbjct: 121 SSPRVVGDARARALCADMK--RCSYYETCATYGLNVDRVFQEVAQKVVTL 168

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.3 bits (90), Expect = 9e-05
 Identities = 26/185 (14%), Positives = 59/185 (31%), Gaps = 20/185 (10%)

Query: 11  KKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTY------------- 57
            +    +++ +VG  N GK+T+   I  ++ +++SP  G     V               
Sbjct: 3   PEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVD 62

Query: 58  ---QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEER 114
               +    +     ++       +  E+ D +V V+D++      D +M      +   
Sbjct: 63  TAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRA 122

Query: 115 LSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLV 174
                                T++ +    E +    +  ++  SA  G  +    D + 
Sbjct: 123 SVVVFNKWDLVVHREKRYDEFTKLFR----EKLYFIDYSPLIFTSADKGWNIDRMIDAMN 178

Query: 175 QDIAS 179
              AS
Sbjct: 179 LAYAS 183

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.2 bits (87), Expect = 2e-04
 Identities = 19/162 (11%), Positives = 47/162 (29%), Gaps = 4/162 (2%)

Query: 19  ILMVGLDNSGKTTIVLKINGEDTSVISPTLG---FNIKTVTYQKYTLNIWDVGGQRTIRS 75
           +L+VG  N GK+T+  K+  +  +++    G     ++                      
Sbjct: 3   VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 62

Query: 76  YWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP 135
                 +  +  + ++  +DL               E          +      N A   
Sbjct: 63  QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 122

Query: 136 TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177
            E  + +  E +      + +  SA     L    + +++ +
Sbjct: 123 REFEREVKPE-LYSLGFGEPIPVSAEHNINLDTMLETIIKKL 163

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 37.9 bits (87), Expect = 3e-04
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 3   LLSIIRKIKKKEK-EMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTV----TY 57
           LL ++  +K+++   + IL++G    GK++ V  I GE    ISP      + V    + 
Sbjct: 18  LLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR 77

Query: 58  QKYTLNIWDVGGQRTIRSYWRNYFEQ 83
             +TLNI D  G              
Sbjct: 78  AGFTLNIIDTPGLIEGGYINDMALNI 103

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.2 bits (85), Expect = 5e-04
 Identities = 25/176 (14%), Positives = 57/176 (32%), Gaps = 19/176 (10%)

Query: 18  RILMVGLDNSGKTTIVLKINGEDTSVISP---TLGFNIKTVTYQKYTLNIW-DVGGQRTI 73
            + +VG  + GK+T++  ++     +      TL  N+  V        +  D+ G    
Sbjct: 3   DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEG 62

Query: 74  RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL 133
                    Q    +  ++ + +         L+     +     +  +      +    
Sbjct: 63  AHQGVGLGHQF---LRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP 119

Query: 134 TPTEIAKVLNLEAMDK--------TRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181
                 K+   EA +         T  + +   SA T EGL      L+ ++A+++
Sbjct: 120 QIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGL----RELLFEVANQL 171

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 35.9 bits (81), Expect = 0.001
 Identities = 18/170 (10%), Positives = 58/170 (34%), Gaps = 15/170 (8%)

Query: 18  RILMVGLDNSGKTTIVLKINGEDTSVIS-----PTLGFNIKTVTYQKYTLNIWDVGGQRT 72
            I + G  N GK++ +  +        +      T   N   +  + + +++   G  + 
Sbjct: 25  EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84

Query: 73  IRSYWRNYFEQTDGLVWVVDSSDLRR-----LDDCKMELDNLLKEERLSGASLLILANKQ 127
            +S    +    +  +   +                 +   + +  +  G  ++++A K 
Sbjct: 85  SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144

Query: 128 DINGALTPTEIAKVLNL--EAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ 175
           D    +   +  K   +  + ++     +++  S+ T +G  E +  + +
Sbjct: 145 DK---IPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKK 191

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.1 bits (80), Expect = 0.003
 Identities = 19/140 (13%), Positives = 39/140 (27%), Gaps = 21/140 (15%)

Query: 3   LLSIIRKIKKK--EKEMRILMVGLDNSGKTTIV---LKINGEDTSVISPTLGFNIKTVTY 57
             S I    K+     + + + G   SGK++ +     I  E+       +         
Sbjct: 41  TNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP 100

Query: 58  QKYTLN----IWDVGGQRTIRSYWRNYFEQT-----DGLVWVVDSSDLRRLDDCKMELDN 108
            K+        WD+ G  +       Y E+      D  + +       R     +++  
Sbjct: 101 YKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISA----TRFKKNDIDIAK 156

Query: 109 LLKEERLSGASLLILANKQD 128
            +            +  K D
Sbjct: 157 AISMM---KKEFYFVRTKVD 173

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	185
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	100.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.98
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.98
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.98
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.98
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.98
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.98
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.97
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.97
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.97
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.97
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.97
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.97
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.97
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.96
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.96
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.95
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.94
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.94
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.94
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.93
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.93
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.93
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.93
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.93
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.93
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.92
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.91
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.91
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.9
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.9
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.9
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.9
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.9
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.88
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.86
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.85
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.84
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.83
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.82
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.81
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.8
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.79
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.78
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.76
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.66
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.66
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.62
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.53
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.46
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.37
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.36
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.31
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.25
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.15
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.09
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	99.0
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.62
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.49
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.45
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.43
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.3
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.27
d1okkd2	207	GTPase domain of the signal recognition particle r	98.17
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.12
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.12
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.11
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.09
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.06
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.96
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.92
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.92
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.9
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.87
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.87
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.82
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.82
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.81
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.73
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.73
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.72
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.72
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.7
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.7
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.67
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.67
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.64
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.58
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.58
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.55
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.54
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.52
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.52
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.52
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.51
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.51
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.51
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.51
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.49
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.49
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.46
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.46
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.46
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.45
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.44
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.44
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.43
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.42
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.41
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.4
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.38
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.38
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.38
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.38
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.38
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.36
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.35
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.35
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.34
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.34
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.34
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.33
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.33
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.31
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.3
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.28
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.28
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.28
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.27
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.27
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.24
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.24
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.22
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.22
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.22
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.21
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.2
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.19
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.19
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.17
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.16
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.15
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.13
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.12
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.03
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.01
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.01
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.97
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.92
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.91
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.85
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.8
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.8
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.75
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.75
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.75
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.72
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.68
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.53
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.5
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.43
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.41
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.37
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.36
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.28
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.27
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.26
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.23
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.15
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.1
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.08
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.06
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.04
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.04
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.98
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.95
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.89
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.87
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.84
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.79
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.73
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.69
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.66
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.63
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.62
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.62
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.6
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.57
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.5
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.42
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.41
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.39
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.35
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.31
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.25
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.24
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.19
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.15
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.15
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.12
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.02
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.0
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.98
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.96
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.6
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.38
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.23
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	94.19
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.08
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	93.69
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.66
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.56
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	93.55
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.44
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	93.11
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	92.85
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	92.35
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	92.21
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	90.96
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	89.72
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.11
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	88.83
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	88.77
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.76
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	88.26
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	87.97
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.94
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	87.81
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	85.78
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	85.49
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	85.27
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	84.71
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	84.57
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	82.5
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	81.97
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	81.95
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	81.4
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	81.31

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=100.00  E-value=2.9e-36  Score=207.12  Aligned_cols=173  Identities=51%  Similarity=0.923  Sum_probs=152.2

Q ss_pred             HHHHHHh-hccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhc
Q 029920            4 LSIIRKI-KKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFE   82 (185)
Q Consensus         4 ~~~~~~~-~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~   82 (185)
                      .+.++.. ..+.+.+||+++|++|||||||+++|.++.+....++.++....+...++.+.+||++|++.+...+..+++
T Consensus         3 ~~~~~k~~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~   82 (176)
T d1fzqa_           3 LSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFE   82 (176)
T ss_dssp             CCHHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHT
T ss_pred             HHHHHHhhCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhh
Confidence            3444444 335667999999999999999999999999988888999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccC
Q 029920           83 QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYT  162 (185)
Q Consensus        83 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (185)
                      .+|++++|||++++.++..+..++..........++|+++++||+|+.+........+.+....... ..+++++|||++
T Consensus        83 ~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~t  161 (176)
T d1fzqa_          83 NTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRD-RVWQIQSCSALT  161 (176)
T ss_dssp             TCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCS-SCEEEEECCTTT
T ss_pred             ccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHh-cCCEEEEEeCCC
Confidence            9999999999999999999999999888877777899999999999988878877777776554444 678899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 029920          163 GEGLLEGFDWLVQDI  177 (185)
Q Consensus       163 ~~~i~~l~~~l~~~~  177 (185)
                      |.|++++|+||++.+
T Consensus       162 g~gv~e~~~~l~~~i  176 (176)
T d1fzqa_         162 GEGVQDGMNWVCKNV  176 (176)
T ss_dssp             CTTHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHhcC
Confidence            999999999998753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=100.00  E-value=7.4e-37  Score=211.30  Aligned_cols=175  Identities=45%  Similarity=0.840  Sum_probs=154.3

Q ss_pred             HHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCC
Q 029920            5 SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQT   84 (185)
Q Consensus         5 ~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   84 (185)
                      +.+.++...++.+||+++|++|||||||++++.+..+....+|.+.........++.+.+||+||++.+...+..++..+
T Consensus         6 ~~~~~l~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (182)
T d1moza_           6 SMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADT   85 (182)
T ss_dssp             HHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTE
T ss_pred             HHHHHHhCCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEEEEeeCCEEEEEEecccccccchhHHhhhccc
Confidence            45556777888999999999999999999999999888888999988888999999999999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920           85 DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE  164 (185)
Q Consensus        85 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (185)
                      |++++|+|++++.++.....++...+......+.|+++++||+|+.+....+++...+....+.. ..+++++|||++|.
T Consensus        86 ~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~-~~~~~~e~SA~~g~  164 (182)
T d1moza_          86 AAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKD-RSWSIVASSAIKGE  164 (182)
T ss_dssp             EEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCS-SCEEEEEEBGGGTB
T ss_pred             eeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhh-CCCEEEEEECCCCC
Confidence            99999999999999999999998888776677899999999999988888888888887655554 67899999999999


Q ss_pred             CHHHHHHHHHHHHhhh
Q 029920          165 GLLEGFDWLVQDIASR  180 (185)
Q Consensus       165 ~i~~l~~~l~~~~~~~  180 (185)
                      |+++++++|.+.+.++
T Consensus       165 gv~e~~~~l~~~i~~~  180 (182)
T d1moza_         165 GITEGLDWLIDVIKEE  180 (182)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHc
Confidence            9999999999998775

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=100.00  E-value=7.7e-36  Score=203.04  Aligned_cols=165  Identities=63%  Similarity=1.127  Sum_probs=149.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSS   94 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   94 (185)
                      +.+||+++|++|||||||+++|.+..+....+|.+.....+..+++.+.+||+||++.++..+..+++.++++++|+|++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   80 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA   80 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETT
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecc
Confidence            36899999999999999999999999999999999999899999999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHH
Q 029920           95 DLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLV  174 (185)
Q Consensus        95 ~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (185)
                      +..++.....++...+......+.|+++|+||+|+.+.....+....+....+.. ..+++++|||++|.|+++++++|.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~g~gv~e~~~~l~  159 (165)
T d1ksha_          81 DRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRS-HHWRIQGCSAVTGEDLLPGIDWLL  159 (165)
T ss_dssp             CGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCS-SCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             cchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhc-CCCEEEEEECCCCCCHHHHHHHHH
Confidence            9999999999998888777777899999999999988878888777776555544 678899999999999999999999


Q ss_pred             HHHhhh
Q 029920          175 QDIASR  180 (185)
Q Consensus       175 ~~~~~~  180 (185)
                      +.+.++
T Consensus       160 ~~i~~r  165 (165)
T d1ksha_         160 DDISSR  165 (165)
T ss_dssp             HHHHTC
T ss_pred             HHHHcC
Confidence            988653

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=100.00  E-value=3.1e-35  Score=199.88  Aligned_cols=161  Identities=35%  Similarity=0.637  Sum_probs=146.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSS   94 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   94 (185)
                      .+||+++|++|||||||+++|.++.+. .+.+|.+.....+..++..+.+||+||++.+...+..++..+|++++|+|++
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   81 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAA   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETT
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhcccccc
Confidence            589999999999999999999888774 5778999988889999999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHH
Q 029920           95 DLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLV  174 (185)
Q Consensus        95 ~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (185)
                      +++++.....++..++.....++.|+++|+||.|+.......++.+.++...+.. ..++++++||++|.|++++|++|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~-~~~~~~e~Sa~~g~gv~e~~~~l~  160 (164)
T d1zd9a1          82 DQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQD-REICCYSISCKEKDNIDITLQWLI  160 (164)
T ss_dssp             CGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCS-SCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             cccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHh-CCCEEEEEeCcCCcCHHHHHHHHH
Confidence            9999999999999998887778899999999999988878888888887665555 688999999999999999999998


Q ss_pred             HHH
Q 029920          175 QDI  177 (185)
Q Consensus       175 ~~~  177 (185)
                      +.+
T Consensus       161 ~~~  163 (164)
T d1zd9a1         161 QHS  163 (164)
T ss_dssp             HTC
T ss_pred             Hcc
Confidence            754

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=100.00  E-value=6.1e-35  Score=200.07  Aligned_cols=164  Identities=44%  Similarity=0.841  Sum_probs=149.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD   92 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   92 (185)
                      ..+.+||+++|++|||||||++++.++......+|.+..........+.+.+||+||.......+..+++.+|++++|+|
T Consensus         9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D   88 (173)
T d1e0sa_           9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD   88 (173)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEEE
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccceEEEEEe
Confidence            56689999999999999999999999998888889998888888899999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHH
Q 029920           93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDW  172 (185)
Q Consensus        93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (185)
                      +++++++..+..++...+......+.|+++++||+|+.+.....++...++...+.. ..+++++|||++|.|++|+|++
T Consensus        89 ~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~-~~~~~~e~SA~tg~gv~e~~~~  167 (173)
T d1e0sa_          89 CADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRD-RNWYVQPSCATSGDGLYEGLTW  167 (173)
T ss_dssp             TTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCS-SCEEEEECBTTTTBTHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHh-CCCEEEEeeCCCCcCHHHHHHH
Confidence            999999999999999988876667899999999999998888888888887665554 6788999999999999999999


Q ss_pred             HHHHH
Q 029920          173 LVQDI  177 (185)
Q Consensus       173 l~~~~  177 (185)
                      |.+.+
T Consensus       168 l~~~~  172 (173)
T d1e0sa_         168 LTSNY  172 (173)
T ss_dssp             HHHHC
T ss_pred             HHHhc
Confidence            98765

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-34  Score=194.70  Aligned_cols=158  Identities=16%  Similarity=0.203  Sum_probs=115.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDS   93 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   93 (185)
                      +||+++|++|||||||++++.+..+....++.+... ..+..++  +.+.+||++|++.+..++..+++.+|++++|||+
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~   81 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSV   81 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC---------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEET
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceeccc
Confidence            799999999999999999999988766666655443 3455554  6889999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHHHHHH
Q 029920           94 SDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFD  171 (185)
Q Consensus        94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (185)
                      +++++++.+..|+..+.......++|+++|+||+|+.+...  ..+... +     +...++++++|||++|.|++++|+
T Consensus        82 t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~-~-----~~~~~~~~~e~Sak~~~~v~~~f~  155 (168)
T d2gjsa1          82 TDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRA-C-----AVVFDCKFIETSAALHHNVQALFE  155 (168)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHH-H-----HHHHTSEEEECBTTTTBSHHHHHH
T ss_pred             cccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHH-H-----HHhcCCEEEEEeCCCCcCHHHHHH
Confidence            99999999999998887765566789999999999865422  222222 1     122567899999999999999999


Q ss_pred             HHHHHHhhh
Q 029920          172 WLVQDIASR  180 (185)
Q Consensus       172 ~l~~~~~~~  180 (185)
                      .|++.+..+
T Consensus       156 ~l~~~i~~~  164 (168)
T d2gjsa1         156 GVVRQIRLR  164 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987665

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-33  Score=191.69  Aligned_cols=164  Identities=17%  Similarity=0.270  Sum_probs=132.3

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc-eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG-FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      ++.+.+||+++|++|||||||++++.++.+. .+.++.. .....+.+++  +.+.+||++|++.+...+..+++.+|++
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~   81 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   81 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence            4567899999999999999999999988775 3444444 2334455554  6788899999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      ++|||++++.+|..+..|+..+.+.....+.|+++|+||+|+....  ..++... +..     ..++++++|||++|.|
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~-~~~-----~~~~~~~e~Sak~g~g  155 (173)
T d2fn4a1          82 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA-FGA-----SHHVAYFEASAKLRLN  155 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHH-HHH-----HTTCEEEECBTTTTBS
T ss_pred             eeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhH-HHH-----hcCCEEEEEeCCCCcC
Confidence            9999999999999999999988776556689999999999986432  2223222 211     1567899999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 029920          166 LLEGFDWLVQDIASRI  181 (185)
Q Consensus       166 i~~l~~~l~~~~~~~~  181 (185)
                      ++++|+.|++.+.++.
T Consensus       156 v~e~f~~l~~~i~k~~  171 (173)
T d2fn4a1         156 VDEAFEQLVRAVRKYQ  171 (173)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999987654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-33  Score=192.73  Aligned_cols=156  Identities=18%  Similarity=0.318  Sum_probs=124.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEEEE--E--cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKTVT--Y--QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~~~--~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      .+||+++|++|||||||+++++++.+. .+.+|.+.......  .  ..+.+.+||++|+..+..++..+++.+|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            579999999999999999999988875 55677775544433  3  347899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF  170 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (185)
                      ||+++++||+.+..|+..+.+..  ++.|+++|+||+|+.......+...      .....+++++++||++|.|++++|
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~------~~~~~~~~~~e~Sak~~~~v~e~f  154 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSIV------FHRKKNLQYYDISAKSNYNFEKPF  154 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCSCSCCTTTSHH------HHSSCSSEEEEEBTTTTBTTTHHH
T ss_pred             cccccccccchhHHHHHHHhhcc--CCCceeeecchhhhhhhhhhhHHHH------HHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999998877643  4799999999999876544332221      222267889999999999999999


Q ss_pred             HHHHHHHhh
Q 029920          171 DWLVQDIAS  179 (185)
Q Consensus       171 ~~l~~~~~~  179 (185)
                      ++|++.+.+
T Consensus       155 ~~l~~~l~~  163 (170)
T d1i2ma_         155 LWLARKLIG  163 (170)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHcc
Confidence            999998764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.5e-32  Score=187.34  Aligned_cols=160  Identities=20%  Similarity=0.363  Sum_probs=127.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE--EEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK--TVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ...+||+++|++|||||||+++|.++.+. ...++.+....  .+....  +.+.+|||||++.+..++..+++.+|++|
T Consensus         3 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~i   82 (169)
T d3raba_           3 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI   82 (169)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEE
T ss_pred             CeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            35689999999999999999999887764 45556654433  334433  68999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL  166 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (185)
                      +|+|+++++++.....++...... ...+.|+++++||+|+....  ..++... +.     ...++++++|||++|.|+
T Consensus        83 lv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~v~~~~~~~-~~-----~~~~~~~~e~Sak~g~gv  155 (169)
T d3raba_          83 LMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQ-LA-----DHLGFEFFEASAKDNINV  155 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH-CCSCCEEEEEEECTTCGGGCCSCHHHHHH-HH-----HHHTCEEEECBTTTTBSH
T ss_pred             EEEECccchhhhhhhhhhhhhhcc-cCCcceEEEEEeecccccccccchhhhHH-HH-----HHcCCEEEEecCCCCcCH
Confidence            999999999999998888776443 45679999999999986542  2333332 21     125678999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 029920          167 LEGFDWLVQDIASR  180 (185)
Q Consensus       167 ~~l~~~l~~~~~~~  180 (185)
                      +++|++|++.+.++
T Consensus       156 ~e~f~~l~~~i~ek  169 (169)
T d3raba_         156 KQTFERLVDVICEK  169 (169)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhhC
Confidence            99999999988653

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=1.4e-32  Score=187.36  Aligned_cols=159  Identities=20%  Similarity=0.298  Sum_probs=127.3

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      +.+||+|+|++|||||||+++++++.+. .+.+|.+... ..+..++  +.+.+||++|++.+..++..+++.+|++++|
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence            4689999999999999999999887764 5667776443 3344544  6788999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      ||++++.+++.+..|+..+.+.....+.|+++|+||+|+.+.  ...++......      ..++++++|||++|.|+++
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~------~~~~~~~e~Sak~g~gv~e  156 (168)
T d1u8za_          83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD------QWNVNYVETSAKTRANVDK  156 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH------HHTCEEEECCTTTCTTHHH
T ss_pred             eeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHH------HcCCeEEEEcCCCCcCHHH
Confidence            999999999999999999887766678999999999998543  23333332221      1567899999999999999


Q ss_pred             HHHHHHHHHhh
Q 029920          169 GFDWLVQDIAS  179 (185)
Q Consensus       169 l~~~l~~~~~~  179 (185)
                      +|++|++.+..
T Consensus       157 ~f~~l~~~i~~  167 (168)
T d1u8za_         157 VFFDLMREIRA  167 (168)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHC
Confidence            99999988765

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=100.00  E-value=7.3e-32  Score=181.87  Aligned_cols=160  Identities=46%  Similarity=0.868  Sum_probs=141.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCc
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL   96 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   96 (185)
                      +||+++|++|||||||+++|.++.+....++............+.+.+||++|.......+..++..++++++++|+.++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   80 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecCh
Confidence            58999999999999999999998887666666666667777889999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHH
Q 029920           97 RRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQD  176 (185)
Q Consensus        97 ~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  176 (185)
                      .++.....++............|+++++||.|+.+.....++........... .++++++|||++|.|++++|++|.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~SAktg~gi~e~~~~l~~~  159 (160)
T d1r8sa_          81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH-RNWYIQATCATSGDGLYEGLDWLSNQ  159 (160)
T ss_dssp             GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSS-CCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhh-CCCEEEEeECCCCCCHHHHHHHHHhc
Confidence            99999999999998877777899999999999988888877777666554444 67899999999999999999999876


Q ss_pred             H
Q 029920          177 I  177 (185)
Q Consensus       177 ~  177 (185)
                      +
T Consensus       160 l  160 (160)
T d1r8sa_         160 L  160 (160)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-32  Score=186.30  Aligned_cols=161  Identities=19%  Similarity=0.320  Sum_probs=130.4

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcceEEEE-EEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLGFNIKT-VTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~~~~~~-~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      +.+||+++|++|||||||+++|+++.+.. +.++.+..... +...  ...+.+||++|.+.+...+..++..++++++|
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv   81 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence            45899999999999999999999887754 45666643332 2333  36789999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF  170 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (185)
                      +|++++.+|+.+..|+..+.......++|+++|+||+|+.......+....+..     ..++++++|||++|.|++++|
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~e~Sak~g~gi~e~f  156 (166)
T d1ctqa_          82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLAR-----SYGIPYIETSAKTRQGVEDAF  156 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHH-----HHTCCEEECCTTTCTTHHHHH
T ss_pred             ecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHH-----HhCCeEEEEcCCCCcCHHHHH
Confidence            999999999999999988877666668999999999998655433333322322     256689999999999999999


Q ss_pred             HHHHHHHhhh
Q 029920          171 DWLVQDIASR  180 (185)
Q Consensus       171 ~~l~~~~~~~  180 (185)
                      .+|++.+.++
T Consensus       157 ~~i~~~i~~~  166 (166)
T d1ctqa_         157 YTLVREIRQH  166 (166)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhC
Confidence            9999988753

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-32  Score=186.34  Aligned_cols=160  Identities=18%  Similarity=0.258  Sum_probs=126.9

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce-EEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF-NIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~-~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      +.+||+++|++|||||||++++.++.+. .+.+|.+. ....+..++  +.+.+||++|...+......++..+|++++|
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            4589999999999999999999887764 55666663 333344544  6899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      +|.+++++|+.+..|+..+.......+.|+++|+||+|+...  ...++......      ..++++++|||++|.|+++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~------~~~~~~~e~Sak~~~~i~e  157 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLAR------QLKVTYMEASAKIRMNVDQ  157 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHH------HTTCEEEECBTTTTBSHHH
T ss_pred             eccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHH------HcCCEEEEEcCCCCcCHHH
Confidence            999999999999999988887766668999999999998654  23333332221      2567899999999999999


Q ss_pred             HHHHHHHHHhhh
Q 029920          169 GFDWLVQDIASR  180 (185)
Q Consensus       169 l~~~l~~~~~~~  180 (185)
                      +|..|++.+.+.
T Consensus       158 ~f~~l~~~i~k~  169 (171)
T d2erya1         158 AFHELVRVIRKF  169 (171)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-32  Score=186.77  Aligned_cols=159  Identities=17%  Similarity=0.252  Sum_probs=128.7

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEE--cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTY--QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      +.+||+++|++|||||||++++..+.+. .+.++.+.... .+..  ....+.+||++|++.+...+..+++.+|++++|
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   81 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence            5789999999999999999999988875 45666663333 2333  337899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      ||++++++|+.+..|+..+.+....++.|+++|+||+|+.....  .++.....     ....+.++++|||++|.|+++
T Consensus        82 ~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~e~Sak~g~gv~e  156 (167)
T d1c1ya_          82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA-----RQWCNCAFLESSAKSKINVNE  156 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTSCEEEECBTTTTBSHHH
T ss_pred             eeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHH-----HHhCCCEEEEEcCCCCcCHHH
Confidence            99999999999999999988765667899999999999864422  22222211     112567899999999999999


Q ss_pred             HHHHHHHHHh
Q 029920          169 GFDWLVQDIA  178 (185)
Q Consensus       169 l~~~l~~~~~  178 (185)
                      +|++|++.+.
T Consensus       157 ~F~~l~~~i~  166 (167)
T d1c1ya_         157 IFYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999998774

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.6e-32  Score=185.50  Aligned_cols=160  Identities=18%  Similarity=0.234  Sum_probs=130.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      +.+||+++|++|||||||++++.++.+. .+.++.+... ..+..++  ..+.+||++|++.+...+..+++.+|++++|
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence            4699999999999999999999987764 5556665332 3344444  7888999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCC-CHH
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE-GLL  167 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~  167 (185)
                      ||++++++|..+..|+..+.+.....+.|+++++||+|+....  ..++..+...      ..+++++++||+++. ||+
T Consensus        83 ~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~------~~~~~~~e~Sak~~~~nV~  156 (169)
T d1x1ra1          83 YSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT------KYNIPYIETSAKDPPLNVD  156 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH------HHTCCEEEEBCSSSCBSHH
T ss_pred             cccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHH------HcCCEEEEEcCCCCCcCHH
Confidence            9999999999999999988777656689999999999986653  3333332221      256789999999886 999


Q ss_pred             HHHHHHHHHHhhh
Q 029920          168 EGFDWLVQDIASR  180 (185)
Q Consensus       168 ~l~~~l~~~~~~~  180 (185)
                      ++|+.|++.+.++
T Consensus       157 ~~F~~l~~~i~~~  169 (169)
T d1x1ra1         157 KTFHDLVRVIRQQ  169 (169)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999988764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-32  Score=187.99  Aligned_cols=163  Identities=17%  Similarity=0.278  Sum_probs=125.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      +.||+|+|++|||||||++++.++.+. .+.+|.+.... ....+  ...+.+||++|++.+...+..+++.+|++++||
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF   81 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence            478999999999999999999988875 45666653332 23333  367999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCc---------ccccCccceEEEeecccC
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNL---------EAMDKTRHWKIVGCSAYT  162 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~Sa~~  162 (185)
                      |+++++||+....++...+.. ..++.|+++|+||+|+.+.....+.......         .........+|++|||++
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          82 SIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHH-HSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             ccchhHHHHHHHHHHHHHHHH-hCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            999999999998888877765 3467999999999998764332222111111         111112346899999999


Q ss_pred             CCCHHHHHHHHHHHHhh
Q 029920          163 GEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       163 ~~~i~~l~~~l~~~~~~  179 (185)
                      |.|++++|+.+++.+.+
T Consensus       161 ~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         161 KDGVREVFEMATRAALQ  177 (177)
T ss_dssp             CTTHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhC
Confidence            99999999999987653

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-32  Score=187.30  Aligned_cols=159  Identities=18%  Similarity=0.296  Sum_probs=129.6

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      .+.+||+++|++|||||||+++|.++.+. .+.+|.+... ..+..++  +.+.+||++|.+.+..+...++..+|++++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            45689999999999999999999877765 5567777543 3445555  678899999999998888899999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      |||++++++|+.+..|+..+.......++|+++|+||+|+...  ...++... +.     ...++++++|||++|.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~-~a-----~~~~~~~~e~Sak~~~~v~  155 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKA-LA-----ESWNAAFLESSAKENQTAV  155 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHH-HH-----HHHTCEEEECCTTCHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHH-HH-----HHcCCEEEEEecCCCCCHH
Confidence            9999999999999999999887766678999999999998643  23333322 21     1256789999999999999


Q ss_pred             HHHHHHHHHHh
Q 029920          168 EGFDWLVQDIA  178 (185)
Q Consensus       168 ~l~~~l~~~~~  178 (185)
                      ++|+.|++.+.
T Consensus       156 ~~f~~li~~~~  166 (167)
T d1xtqa1         156 DVFRRIILEAE  166 (167)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999988764

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-32  Score=186.07  Aligned_cols=160  Identities=19%  Similarity=0.269  Sum_probs=127.4

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      +.+||+++|++|||||||+++++++.+. .+.+|.+.... ....++  +.+.+||++|++.+...+..+++.+|++++|
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            4689999999999999999999988875 55677775433 334444  5788899999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhcc-ccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEE-RLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      ||+++++++..+..|+..+.... ...++|+++|+||+|+...  ...++... +.     ...++++++|||++|.|++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~-~~-----~~~~~~~~e~Sak~~~~v~  154 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEA-LA-----RTWKCAFMETSAKLNHNVK  154 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHH-HH-----HHHTCEEEECBTTTTBSHH
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHH-HH-----HHcCCeEEEEcCCCCcCHH
Confidence            99999999999999888876543 3457899999999998543  23333332 21     1256789999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 029920          168 EGFDWLVQDIASR  180 (185)
Q Consensus       168 ~l~~~l~~~~~~~  180 (185)
                      ++|+.|++.+.++
T Consensus       155 e~f~~l~~~~~~~  167 (171)
T d2erxa1         155 ELFQELLNLEKRR  167 (171)
T ss_dssp             HHHHHHHHTCCSS
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887654

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-32  Score=184.34  Aligned_cols=160  Identities=21%  Similarity=0.267  Sum_probs=127.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      +..+||+++|++|||||||+++|.++.+. ...++.+  +....+..++  +.+.+|||||++.+..++..+++++|+++
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i   82 (171)
T d2ew1a1           3 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI   82 (171)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEE
Confidence            34689999999999999999999988775 3444444  3444555554  67889999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL  166 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (185)
                      +|+|++++.++.....++..+... .....|+++|+||+|+.+..  ..++.... .     ...++++++|||++|.||
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~-~-----~~~~~~~~~~SAktg~gV  155 (171)
T d2ew1a1          83 LTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEF-S-----EAQDMYYLETSAKESDNV  155 (171)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHH-H-----HHHTCCEEECCTTTCTTH
T ss_pred             Eeeecccchhhhhhhhhhhhhccc-ccccccEEEEEeecccccccchhhhHHHHH-H-----HhCCCEEEEEccCCCCCH
Confidence            999999999999999988887654 34568999999999976432  23333322 1     125668999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 029920          167 LEGFDWLVQDIASR  180 (185)
Q Consensus       167 ~~l~~~l~~~~~~~  180 (185)
                      +++|.+|++.+.+.
T Consensus       156 ~e~f~~l~~~l~~~  169 (171)
T d2ew1a1         156 EKLFLDLACRLISE  169 (171)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999877654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-32  Score=187.26  Aligned_cols=156  Identities=16%  Similarity=0.271  Sum_probs=125.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE--EEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK--TVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      .+||+++|++|||||||+++|.++.+. .+.+|.+....  .....+  ..+.+||++|++.+...+..+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            479999999999999999999977764 56677764333  333443  6889999999999988889999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      ||++++++++.+..|+..+....  ++.|+++|+||+|+.+..  ..++.....      ...+++++++||++|.|+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~--~~~~iilVgnK~Dl~~~~~v~~~~~~~~~------~~~~~~~~e~Sak~g~~v~e  153 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLA------KRLKLRFYRTSVKEDLNVSE  153 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHH------HHHTCEEEECBTTTTBSSHH
T ss_pred             EeccchhhhhhcccccccccccC--CCceEEEeeccCCcccceeeeehhhHHHH------HHcCCEEEEeccCCCcCHHH
Confidence            99999999999998888876543  479999999999986432  233332221      12567899999999999999


Q ss_pred             HHHHHHHHHhh
Q 029920          169 GFDWLVQDIAS  179 (185)
Q Consensus       169 l~~~l~~~~~~  179 (185)
                      +|++|++.+.+
T Consensus       154 ~f~~l~~~~lq  164 (164)
T d1z2aa1         154 VFKYLAEKHLQ  164 (164)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999987753

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=100.00  E-value=4.7e-31  Score=180.92  Aligned_cols=172  Identities=37%  Similarity=0.714  Sum_probs=146.3

Q ss_pred             HHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCC
Q 029920            5 SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQT   84 (185)
Q Consensus         5 ~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   84 (185)
                      +.+.+.+ ..+.+||+|+|.+|||||||++++.+..+....++.+.........+..+.++|+++.+.....+..++..+
T Consensus         5 ~~~~~~~-~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   83 (177)
T d1zj6a1           5 TRIWRLF-NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNT   83 (177)
T ss_dssp             HHHHHHH-TTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTC
T ss_pred             HHHHHHh-CCCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEEeecceEEEEeccccccccccchhhhhccc
Confidence            4445555 577799999999999999999999999998888888887888888899999999999999888999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920           85 DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE  164 (185)
Q Consensus        85 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (185)
                      +++++++|.++..++.................+.|+++|+||+|+.......++...+....... ..++++++||++|.
T Consensus        84 ~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~-~~~~~~~~Sa~tg~  162 (177)
T d1zj6a1          84 EFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKD-HQWHIQACCALTGE  162 (177)
T ss_dssp             CEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCS-SCEEEEECBTTTTB
T ss_pred             eeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHh-cCCEEEEEeCCCCC
Confidence            99999999999999998887777777666667899999999999988888888888776655444 77899999999999


Q ss_pred             CHHHHHHHHHHHHh
Q 029920          165 GLLEGFDWLVQDIA  178 (185)
Q Consensus       165 ~i~~l~~~l~~~~~  178 (185)
                      |+++++++|.+.++
T Consensus       163 Gi~e~~~~L~~~lk  176 (177)
T d1zj6a1         163 GLCQGLEWMMSRLK  176 (177)
T ss_dssp             THHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHhC
Confidence            99999999998763

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-31  Score=184.07  Aligned_cols=165  Identities=22%  Similarity=0.355  Sum_probs=133.5

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce--EEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF--NIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      ..+||+++|++|||||||+++|.++.+. .+.++.+.  ....+..++  +.+.+|||||++.+..++..++..+|++++
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~   85 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   85 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            4689999999999999999999988774 44444443  333455544  679999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      |+|++++.++.....++..+.........|+++++||.|...... ..+... +..     ..+++++++||++|.|+++
T Consensus        86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~-~~~-----~~~~~~~e~Sa~tg~gv~e  159 (177)
T d1x3sa1          86 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLK-FAR-----KHSMLFIEASAKTCDGVQC  159 (177)
T ss_dssp             EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHH-HHH-----HTTCEEEECCTTTCTTHHH
T ss_pred             EEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHH-HHH-----HCCCEEEEEeCCCCCCHHH
Confidence            999999999999999999987776666799999999999765433 333332 221     1567899999999999999


Q ss_pred             HHHHHHHHHhhhcccCC
Q 029920          169 GFDWLVQDIASRIYLLD  185 (185)
Q Consensus       169 l~~~l~~~~~~~~~~~~  185 (185)
                      +|+++++.+.+.-.++|
T Consensus       160 ~f~~l~~~l~~~p~l~~  176 (177)
T d1x3sa1         160 AFEELVEKIIQTPGLWE  176 (177)
T ss_dssp             HHHHHHHHHHTSGGGTC
T ss_pred             HHHHHHHHHccCccccc
Confidence            99999999988766664

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-31  Score=181.87  Aligned_cols=155  Identities=19%  Similarity=0.342  Sum_probs=125.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEEE--EEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKTV--TYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~~--~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      +||+++|++|||||||++++.++.+. .+.++.+......  ..+  .+.+.+||++|++.+...+..++..+|++++|+
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            68999999999999999999988775 4566666554433  333  378899999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG  169 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (185)
                      |++++.++..+..|+...... ..++.|+++|+||+|+.+..  ..++.....      ...++++++|||++|.|++++
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~------~~~~~~~~e~SAk~g~~v~e~  153 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTDLADKRQVSIEEGERKA------KELNVMFIETSAKAGYNVKQL  153 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHH-HTTSSEEEEEEECTTCGGGCCSCHHHHHHHH------HHTTCEEEECCTTTCTTHHHH
T ss_pred             ccccccchhhhHhhHHHHHHh-cCCCceEEEEecccchhhhhhhhHHHHHHHH------HHcCCEEEEecCCCCcCHHHH
Confidence            999999999999999887655 44679999999999986432  222222211      115678999999999999999


Q ss_pred             HHHHHHHHh
Q 029920          170 FDWLVQDIA  178 (185)
Q Consensus       170 ~~~l~~~~~  178 (185)
                      |++|++.+.
T Consensus       154 f~~i~~~l~  162 (164)
T d1yzqa1         154 FRRVAAALP  162 (164)
T ss_dssp             HHHHHHHSC
T ss_pred             HHHHHHhhC
Confidence            999998764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-32  Score=184.78  Aligned_cols=158  Identities=18%  Similarity=0.280  Sum_probs=127.3

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      +.+||+++|++|||||||+++++++.+. .+.++.+.. ......++  ..+.+||++|++.+......+++.+|++++|
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   81 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence            5799999999999999999999988764 455666533 22334443  6888999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      +|++++.++..+..|+..+......++.|+++|+||+|+.+..  ...+... +.     ...++++++|||++|.|+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~-~~-----~~~~~~~~e~Sak~g~~i~e  155 (167)
T d1kaoa_          82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRA-LA-----EEWGCPFMETSAKSKTMVDE  155 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHH-HH-----HHHTSCEEEECTTCHHHHHH
T ss_pred             eeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHH-HH-----HHcCCeEEEECCCCCcCHHH
Confidence            9999999999999999888776556789999999999986432  2222221 11     11456899999999999999


Q ss_pred             HHHHHHHHHh
Q 029920          169 GFDWLVQDIA  178 (185)
Q Consensus       169 l~~~l~~~~~  178 (185)
                      +|+.|++.+.
T Consensus       156 ~f~~i~~~i~  165 (167)
T d1kaoa_         156 LFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999998764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-33  Score=191.91  Aligned_cols=165  Identities=20%  Similarity=0.234  Sum_probs=126.3

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      +....+||+++|++|||||||+++|+.+.+. .+.+|.+.. ...+...+  +.+.+||++|++.+...+..+++.+|++
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~   84 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   84 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhccccccee
Confidence            4566799999999999999999999888764 455666533 23333333  6789999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcC---------cccccCccceEEEee
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLN---------LEAMDKTRHWKIVGC  158 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~  158 (185)
                      ++|||+++++||++...++...++. ..++.|+++|+||+|+.+............         .+........+|++|
T Consensus        85 ilv~d~t~~~Sf~~~~~~~~~~~~~-~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~  163 (185)
T d2atxa1          85 LICFSVVNPASFQNVKEEWVPELKE-YAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC  163 (185)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHH-HSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred             eeccccchHHHHHHHHHHHHHHHHh-cCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEe
Confidence            9999999999999988888877765 346799999999999876432221111110         011111133679999


Q ss_pred             cccCCCCHHHHHHHHHHHH
Q 029920          159 SAYTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~  177 (185)
                      ||++|.|++++|+.+++.+
T Consensus       164 SAk~~~gv~e~F~~li~~i  182 (185)
T d2atxa1         164 SALTQKGLKTVFDEAIIAI  182 (185)
T ss_dssp             CTTTCTTHHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHH
Confidence            9999999999999998876

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=7.5e-32  Score=183.54  Aligned_cols=158  Identities=23%  Similarity=0.302  Sum_probs=120.6

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEE--EEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKT--VTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      ..+||+++|++|||||||++++.++.+. .+.+|.+.....  ...+  ...+.+||++|++.+..++..+++++|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            3689999999999999999999988875 456666644433  3333  3789999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      |||+++++||+.+..|+..+... .....|+++++||+|+...  ...++.....      ...++++++|||++|.|++
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~-~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a------~~~~~~~~e~Sak~~~~v~  154 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESYA------ESVGAKHYHTSAKQNKGIE  154 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHHH------HHTTCEEEEEBTTTTBSHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccc-cccccceeeeccccccccccccchHHHHHHH------HHcCCeEEEEecCCCcCHH
Confidence            99999999999999988876544 3456899999999998643  2333333221      1256789999999999999


Q ss_pred             HHHHHHHHHHhh
Q 029920          168 EGFDWLVQDIAS  179 (185)
Q Consensus       168 ~l~~~l~~~~~~  179 (185)
                      ++|++|++.+.+
T Consensus       155 e~F~~l~~~i~~  166 (167)
T d1z08a1         155 ELFLDLCKRMIE  166 (167)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhh
Confidence            999999998754

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.2e-31  Score=183.71  Aligned_cols=162  Identities=20%  Similarity=0.302  Sum_probs=128.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEE--EEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKT--VTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      +..+||+++|++|||||||++++.++.+. .+.++.+.....  +..+  ...+.+||+||++.+..++..++..+|+++
T Consensus         3 ~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (174)
T d2bmea1           3 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   82 (174)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEE
Confidence            45689999999999999999999887764 445565544433  2233  368999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH-HHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP-TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      +|+|.++++++..+..++..+... ...++|+++|+||+|+...... .+....+.     ...+++++++||++|.|++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sak~~~gi~  156 (174)
T d2bmea1          83 LVYDITSRETYNALTNWLTDARML-ASQNIVIILCGNKKDLDADREVTFLEASRFA-----QENELMFLETSALTGENVE  156 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred             EEEecccchhHHHHhhhhcccccc-cCCceEEEEEEecccccchhchhhhHHHHHH-----HhCCCEEEEeeCCCCcCHH
Confidence            999999999999999988887665 3467999999999997543222 22222221     1256789999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 029920          168 EGFDWLVQDIASRI  181 (185)
Q Consensus       168 ~l~~~l~~~~~~~~  181 (185)
                      ++|+++.+.+.+++
T Consensus       157 e~f~~l~~~i~~~~  170 (174)
T d2bmea1         157 EAFVQCARKILNKI  170 (174)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887664

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=6.7e-32  Score=186.80  Aligned_cols=162  Identities=20%  Similarity=0.358  Sum_probs=128.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE--EEEEEEc------------CeEEEEEEcCCchhhHHHHH
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN--IKTVTYQ------------KYTLNIWDVGGQRTIRSYWR   78 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~--~~~~~~~------------~~~~~~~D~~g~~~~~~~~~   78 (185)
                      ...+||+++|++|||||||+++|.++.+. .+.++.+..  ...+.++            ...+.+|||+|++.+..++.
T Consensus         3 d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~   82 (186)
T d2f7sa1           3 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT   82 (186)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHH
Confidence            35689999999999999999999988775 333444322  2233222            26799999999999999999


Q ss_pred             hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEE
Q 029920           79 NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIV  156 (185)
Q Consensus        79 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  156 (185)
                      .+++++|++|+|||++++.+++.+..|+..+.........|+++|+||+|+.+..  ..++......      ..+++++
T Consensus        83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~------~~~~~~~  156 (186)
T d2f7sa1          83 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD------KYGIPYF  156 (186)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH------HTTCCEE
T ss_pred             HHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHH------HcCCEEE
Confidence            9999999999999999999999999888877766566678999999999986542  2333332211      1456899


Q ss_pred             eecccCCCCHHHHHHHHHHHHhhhc
Q 029920          157 GCSAYTGEGLLEGFDWLVQDIASRI  181 (185)
Q Consensus       157 ~~Sa~~~~~i~~l~~~l~~~~~~~~  181 (185)
                      +|||++|.|++++|++|++.+.++.
T Consensus       157 e~Sak~~~~i~e~f~~l~~~i~~k~  181 (186)
T d2f7sa1         157 ETSAATGQNVEKAVETLLDLIMKRM  181 (186)
T ss_dssp             EEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999887654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=1.4e-31  Score=182.22  Aligned_cols=158  Identities=22%  Similarity=0.307  Sum_probs=126.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEE--EEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKT--VTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      .+.+||+++|++|||||||+++|.++.+. .+.+|.+.....  ...+.  ..+.+||++|++.+...+..++..+|+++
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            35799999999999999999999988775 455666654443  23333  56789999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL  166 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (185)
                      +|||++++++|..+..|+...... ...+.|+++|+||+|+.+.  ...++.....      ...++++++|||++|.||
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~------~~~~~~~~e~SAk~~~nV  154 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYA------DSIHAIFVETSAKNAINI  154 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHH------HHTTCEEEECBTTTTBSH
T ss_pred             EEeeechhhhhhhHHHhhhhhhhc-cCCcceEEEecccchhccccchhHHHHHHHH------HHcCCEEEEEecCCCCCH
Confidence            999999999999999888776554 4467999999999998643  2333333221      125678999999999999


Q ss_pred             HHHHHHHHHHHh
Q 029920          167 LEGFDWLVQDIA  178 (185)
Q Consensus       167 ~~l~~~l~~~~~  178 (185)
                      +++|.+|++.+.
T Consensus       155 ~e~f~~l~~~i~  166 (167)
T d1z0ja1         155 NELFIEISRRIP  166 (167)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHhCC
Confidence            999999998764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.3e-31  Score=182.88  Aligned_cols=159  Identities=18%  Similarity=0.251  Sum_probs=128.0

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEEE--EEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKTV--TYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~~--~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      .-.+||+++|++|||||||+++|.++.+. .+.++.+......  ...  ...+.+||++|++.+...+..+++.+|+++
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   83 (170)
T d1r2qa_           4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             eeEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEE
Confidence            34689999999999999999999987765 5567777555443  333  378999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL  166 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (185)
                      +|+|+++++++.....++..+... ..++.|+++|+||+|+....  ..++.. .+.     ...++++++|||++|.||
T Consensus        84 lv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~e~~~-~~~-----~~~~~~~~e~SAk~g~~V  156 (170)
T d1r2qa_          84 VVYDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQ-SYA-----DDNSLLFMETSAKTSMNV  156 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHH-HHH-----HHTTCEEEECCTTTCTTH
T ss_pred             EEeccchhhHHHHHHHHhhhhhhc-cCCCceEEeecccccccccccccHHHHH-HHH-----HhcCCEEEEeeCCCCCCH
Confidence            999999999999999988887654 45679999999999985432  222222 222     125678999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 029920          167 LEGFDWLVQDIAS  179 (185)
Q Consensus       167 ~~l~~~l~~~~~~  179 (185)
                      +++|+.|++.+.+
T Consensus       157 ~e~f~~l~~~i~~  169 (170)
T d1r2qa_         157 NEIFMAIAKKLPK  169 (170)
T ss_dssp             HHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987765

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=6.3e-31  Score=178.75  Aligned_cols=156  Identities=20%  Similarity=0.320  Sum_probs=123.9

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      ..+||+|+|++|+|||||++++.++.+.. ..++..  ........++  +.+.+||+||++.+..++..+++.+|++++
T Consensus         3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~il   82 (166)
T d1z0fa1           3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   82 (166)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEE
Confidence            46899999999999999999999887653 333333  3444455554  589999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      |+|+++++++.....++..+... .....|+++++||+|+....  ..++......      ..++++++|||++|.||+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~------~~~~~~~e~Saktg~~v~  155 (166)
T d1z0fa1          83 VYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFAE------ENGLLFLEASAKTGENVE  155 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH------HTTCEEEECCTTTCTTHH
T ss_pred             EeccCchHHHHHHHHHHHHHHhh-ccccceEEEEcccccchhhcccHHHHHHHHHH------HcCCEEEEEeCCCCCCHH
Confidence            99999999999999988877554 45578999999999985432  2223322211      156789999999999999


Q ss_pred             HHHHHHHHHH
Q 029920          168 EGFDWLVQDI  177 (185)
Q Consensus       168 ~l~~~l~~~~  177 (185)
                      ++|+.|++.+
T Consensus       156 e~f~~i~~~i  165 (166)
T d1z0fa1         156 DAFLEAAKKI  165 (166)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998865

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=4.8e-31  Score=180.83  Aligned_cols=161  Identities=18%  Similarity=0.331  Sum_probs=125.5

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ...+||+|+|++|||||||++++.++.+. ...++.+  .....+..++  ..+.+||++|++.+...+..+++.+|+++
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i   81 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   81 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence            35689999999999999999999888774 3444444  3344455554  68899999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH-HHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP-TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      +|||++++++|.....++..+... ..++.|+++|+||+|+.+.... .+.......     ....++++|||++|.|++
T Consensus        82 ~v~d~~~~~S~~~~~~~~~~i~~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~g~~i~  155 (175)
T d2f9la1          82 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE-----KNNLSFIETSALDSTNVE  155 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHH
T ss_pred             EEEECCCcccchhHHHHHHHHHHh-cCCCCcEEEEEeeecccccccchHHHHHHhhc-----ccCceEEEEecCCCcCHH
Confidence            999999999999999998887665 3467899999999998654222 121111111     156789999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 029920          168 EGFDWLVQDIASR  180 (185)
Q Consensus       168 ~l~~~l~~~~~~~  180 (185)
                      ++|+++++.+.+.
T Consensus       156 e~f~~l~~~i~~~  168 (175)
T d2f9la1         156 EAFKNILTEIYRI  168 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987543

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.6e-31  Score=181.02  Aligned_cols=158  Identities=22%  Similarity=0.327  Sum_probs=124.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEE-EEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKT-VTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      .+||+++|++|||||||+++++++.+. .+.||.+..... +..++  +.+.+||++|++.+. ....+++.+|++++||
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~   80 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY   80 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence            589999999999999999999988864 567787755433 33344  789999999998764 4566788999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCC-CHHH
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE-GLLE  168 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~  168 (185)
                      |+++++++..+..++..........+.|+++|+||+|+...  ...++......      ..++++++|||++|. ||++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~------~~~~~~~e~Saktg~gnV~e  154 (168)
T d2atva1          81 DITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT------ELACAFYECSACTGEGNITE  154 (168)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH------HHTSEEEECCTTTCTTCHHH
T ss_pred             ccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHH------HhCCeEEEEccccCCcCHHH
Confidence            99999999999887666555545568999999999998643  23333332211      256789999999998 6999


Q ss_pred             HHHHHHHHHhhh
Q 029920          169 GFDWLVQDIASR  180 (185)
Q Consensus       169 l~~~l~~~~~~~  180 (185)
                      +|..|++.+.++
T Consensus       155 ~F~~l~~~i~~~  166 (168)
T d2atva1         155 IFYELCREVRRR  166 (168)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988765

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-31  Score=183.27  Aligned_cols=160  Identities=22%  Similarity=0.369  Sum_probs=124.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW   89 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   89 (185)
                      ..+||+|+|++|||||||++++.++.+. .+.++..  .........  ...+.+||++|++.+...+..++..+|++++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            3589999999999999999999888764 3333333  333333333  3689999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      |+|++++.+|+.+..++..+... ...++|+++|+||+|+...  ...++... +.     ...+++++++||++|.|++
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~-~a-----~~~~~~~~e~Sa~tg~~V~  154 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEA-FA-----REHGLIFMETSAKTACNVE  154 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHH-HH-----HHHTCEEEEECTTTCTTHH
T ss_pred             EEeecChHHHHhHHHHHHHHHHh-CCCCCeEEEEecCCchhhhhhhHHHHHHH-HH-----HHcCCEEEEecCCCCCCHH
Confidence            99999999999999999887654 4467999999999997543  22222222 22     1256789999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 029920          168 EGFDWLVQDIASRI  181 (185)
Q Consensus       168 ~l~~~l~~~~~~~~  181 (185)
                      ++|.++++.+.++.
T Consensus       155 e~f~~i~~~i~~~~  168 (173)
T d2a5ja1         155 EAFINTAKEIYRKI  168 (173)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999877654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-31  Score=184.47  Aligned_cols=165  Identities=18%  Similarity=0.242  Sum_probs=125.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ..+.+||+|+|++|||||||+++|..+.+. .+.+|.+... ..+..++  ..+.+||++|++.+...+..+++.+|+++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            356799999999999999999999988764 5567776333 3344443  67889999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHH-HHhcCc--------ccccCccceEEEeec
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEI-AKVLNL--------EAMDKTRHWKIVGCS  159 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~S  159 (185)
                      +|||++++++|+.+..++...+.. ...+.|+++|+||+|+.+.....+. ......        ..+......+|++||
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~S  160 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHH-HSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             eeeccchHHHHHHHHHHHHHHHHH-hCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcC
Confidence            999999999999998777776654 3457899999999998554221111 111100        011112347899999


Q ss_pred             ccCCCCHHHHHHHHHHHHh
Q 029920          160 AYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~  178 (185)
                      |++|.||+++|+.+++.+.
T Consensus       161 Ak~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         161 ALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             TTTCTTHHHHHHHHHHHHS
T ss_pred             CCCCcCHHHHHHHHHHHHc
Confidence            9999999999999998764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.5e-31  Score=181.92  Aligned_cols=160  Identities=25%  Similarity=0.395  Sum_probs=125.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE--EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN--IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      .+||+++|++|||||||+++++++.+. .+.+|.+..  ...+..++  ..+.+|||||++.+..++..+++.+|++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            589999999999999999999988764 445666543  34444444  6788899999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF  170 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (185)
                      +|.+++++++....++...... .....|++++++|.|+.......+....+..     ..++++++|||++|.|++++|
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~e~f  155 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPFIESSAKNDDNVNEIF  155 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTCCSCHHHHHHHHH-----HHTCCEEECBTTTTBSHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhcc-ccCcceeeeecchhhhhhhhhhHHHHHHHHH-----hcCCeEEEECCCCCCCHHHHH
Confidence            9999999999988877766554 4456899999999998766544444433322     156789999999999999999


Q ss_pred             HHHHHHHhhhc
Q 029920          171 DWLVQDIASRI  181 (185)
Q Consensus       171 ~~l~~~~~~~~  181 (185)
                      ++|++.+.+++
T Consensus       156 ~~l~~~i~~k~  166 (166)
T d1g16a_         156 FTLAKLIQEKI  166 (166)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhcC
Confidence            99999987763

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=8.9e-32  Score=183.65  Aligned_cols=161  Identities=20%  Similarity=0.308  Sum_probs=125.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE--EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN--IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      .+||+++|++|||||||++++.++.+. .+.+|.+..  ...+..++  +.+.+||++|++.+...+..++..+|++++|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            589999999999999999999988764 556777643  33455544  6899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF  170 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (185)
                      ||++++.+++....|+...... .....|+++++||+|+.+....+.+........ +...+++++++||++|.|++++|
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~-~~~~~~~~~e~Sak~g~gV~e~F  160 (170)
T d1ek0a_          83 YDVTKPQSFIKARHWVKELHEQ-ASKDIIIALVGNKIDMLQEGGERKVAREEGEKL-AEEKGLLFFETSAKTGENVNDVF  160 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHH-HHHHTCEEEECCTTTCTTHHHHH
T ss_pred             EeCCcccchhhhhhhhhhhccc-cccccceeeeecccccccccchhhhhHHHHHHH-HHHcCCEEEEecCCCCcCHHHHH
Confidence            9999999999999888776554 445789999999999754322221111111111 11256799999999999999999


Q ss_pred             HHHHHHHh
Q 029920          171 DWLVQDIA  178 (185)
Q Consensus       171 ~~l~~~~~  178 (185)
                      ..|++.+.
T Consensus       161 ~~i~~~i~  168 (170)
T d1ek0a_         161 LGIGEKIP  168 (170)
T ss_dssp             HHHHTTSC
T ss_pred             HHHHHHhc
Confidence            99887653

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.5e-31  Score=181.92  Aligned_cols=161  Identities=23%  Similarity=0.395  Sum_probs=101.8

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ...+||+++|++|||||||+++|.++.+. ...++.+  .....+..++  +.+.+||+||++.+..++..+++.+|++|
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i   83 (173)
T d2fu5c1           4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   83 (173)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEE
Confidence            45689999999999999999999987764 3445554  3344555555  67888999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH--HHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP--TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL  166 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (185)
                      +|+|++++.++..+..++..+... ...+.|+++|+||+|.......  .+.....      ...++++++|||++|.|+
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~------~~~~~~~~e~Sa~~g~gv  156 (173)
T d2fu5c1          84 LVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLA------LDYGIKFMETSAKANINV  156 (173)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHH------HHHTCEEEECCC---CCH
T ss_pred             EEEECCChhhHHHHHHHHHHhhhh-ccCCceEEEEEecccchhhcccHHHHHHHHH------HhcCCEEEEEeCCCCCCH
Confidence            999999999999998888777543 4567999999999998754332  2222211      115678999999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q 029920          167 LEGFDWLVQDIASRI  181 (185)
Q Consensus       167 ~~l~~~l~~~~~~~~  181 (185)
                      +++|++|++.+.++.
T Consensus       157 ~e~f~~l~~~i~~k~  171 (173)
T d2fu5c1         157 ENAFFTLARDIKAKM  171 (173)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999987654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.4e-32  Score=187.08  Aligned_cols=165  Identities=19%  Similarity=0.235  Sum_probs=126.4

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEE-EEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKT-VTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      +.+||+++|++|||||||++++.++.+. .+.+|.+..... ...++  ..+.+||++|++.+...+..+++.+|++++|
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            4689999999999999999999988864 556777644332 33333  6899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhc---------CcccccCccceEEEeeccc
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVL---------NLEAMDKTRHWKIVGCSAY  161 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~Sa~  161 (185)
                      ||+++++||+.+..|+...+.. ...+.|+++|+||+|+.+.....+.....         ....+......++++|||+
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~-~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  160 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL  160 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHH-HCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTT
T ss_pred             cccchHHHHHHHHHHHHHHHhh-cCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCC
Confidence            9999999999998877777665 34679999999999986542111111000         0011112244679999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh
Q 029920          162 TGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~~  180 (185)
                      +|.|++++|+.+++.+.+.
T Consensus       161 ~~~~V~e~f~~l~~~~~~~  179 (191)
T d2ngra_         161 TQKGLKNVFDEAILAALEP  179 (191)
T ss_dssp             TCTTHHHHHHHHHHHHTSC
T ss_pred             CCcCHHHHHHHHHHHHhcC
Confidence            9999999999999877543

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.2e-31  Score=181.05  Aligned_cols=161  Identities=20%  Similarity=0.295  Sum_probs=113.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEE--EEE---cCeEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKT--VTY---QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~--~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      +.+||+++|++|||||||+++|.++.+. .+.++.+.....  ...   ....+.+||++|++.+...+..+++.+|+++
T Consensus         1 n~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (175)
T d1ky3a_           1 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV   80 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEE
Confidence            3589999999999999999999887764 445555433222  222   2367899999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhcc---ccCCCeEEEEeecCCCCCCC---CHHHHHHhcCcccccCccceEEEeecccC
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEE---RLSGASLLILANKQDINGAL---TPTEIAKVLNLEAMDKTRHWKIVGCSAYT  162 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~ivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (185)
                      +|+|++++.+|+.+..|+..+....   ...++|+++++||+|+.+..   ..++..+ +..    .....++++|||++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~-~~~----~~~~~~~~e~SA~~  155 (175)
T d1ky3a_          81 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQE-LAK----SLGDIPLFLTSAKN  155 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHH-HHH----HTTSCCEEEEBTTT
T ss_pred             EEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHH-HHH----HcCCCeEEEEeCCC
Confidence            9999999999999988888776543   23468999999999986532   2222222 211    11346799999999


Q ss_pred             CCCHHHHHHHHHHHHhhh
Q 029920          163 GEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       163 ~~~i~~l~~~l~~~~~~~  180 (185)
                      |.|++++|++|++.+.++
T Consensus       156 g~gv~e~f~~l~~~~l~~  173 (175)
T d1ky3a_         156 AINVDTAFEEIARSALQQ  173 (175)
T ss_dssp             TBSHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHhc
Confidence            999999999999877654

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.5e-31  Score=182.96  Aligned_cols=161  Identities=21%  Similarity=0.381  Sum_probs=127.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE--EEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK--TVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLV   88 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   88 (185)
                      ...+||+|+|++|||||||++++.++.+. .+.++.+....  .+.++  .+.+.+|||||++.+..++..+++.+|++|
T Consensus         4 ~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i   83 (194)
T d2bcgy1           4 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   83 (194)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            44689999999999999999999887764 55666664433  34443  478999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL  166 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (185)
                      +|+|.++++++.....++..+.+. ...+.|+++|+||+|+.+...  .++......      ..+.+++++||++|.|+
T Consensus        84 ~v~d~t~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~e~SAk~g~gi  156 (194)
T d2bcgy1          84 IVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD------ANKMPFLETSALDSTNV  156 (194)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH------HTTCCEEECCTTTCTTH
T ss_pred             EEEeCcchhhhhhHhhhhhhhhhc-ccCCceEEEEEeccccccccchhHHHHhhhhh------ccCcceEEEecCcCccH
Confidence            999999999999988887776544 456799999999999875432  222222111      15567999999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q 029920          167 LEGFDWLVQDIASRI  181 (185)
Q Consensus       167 ~~l~~~l~~~~~~~~  181 (185)
                      +++|+++++.+.+..
T Consensus       157 ~e~f~~l~~~i~~~~  171 (194)
T d2bcgy1         157 EDAFLTMARQIKESM  171 (194)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999886543

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-30  Score=177.33  Aligned_cols=159  Identities=19%  Similarity=0.335  Sum_probs=118.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCc-c-cccCcceEEE--EEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-V-ISPTLGFNIK--TVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~-~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      +..+||+++|++|||||||++++.++.+. . ..++.+....  .+..++  +.+.+|||||++.+..++..+++.+|++
T Consensus         4 d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~   83 (170)
T d2g6ba1           4 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL   83 (170)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred             ceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCcee
Confidence            56789999999999999999999887763 2 3344444443  344444  6789999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG  165 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (185)
                      ++|+|+++++++.....++....... ....|+++++||+|+.....  .++......      ..+++++++||++|.|
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~------~~~~~~~e~Sak~g~g  156 (170)
T d2g6ba1          84 LLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAK------EYGLPFMETSAKTGLN  156 (170)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHH------HHTCCEEECCTTTCTT
T ss_pred             EEEecCCcccchhhhhhhhhhhhhcc-CCCceEEEEEeeechhhcccccHHHHHHHHH------HcCCEEEEEeCCCCcC
Confidence            99999999999999999888876653 45689999999999876432  333222211      1567899999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 029920          166 LLEGFDWLVQDIAS  179 (185)
Q Consensus       166 i~~l~~~l~~~~~~  179 (185)
                      ++++|++|++.+.+
T Consensus       157 i~e~f~~l~~~i~k  170 (170)
T d2g6ba1         157 VDLAFTAIAKELKR  170 (170)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCC
Confidence            99999999988753

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=6.1e-31  Score=181.64  Aligned_cols=162  Identities=19%  Similarity=0.269  Sum_probs=128.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEEEEE----cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKTVTY----QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      .+||+|+|.+|||||||+++++++.+. .+.+|.+........    ..+.+.+||++|.......+..++..+|++++|
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            479999999999999999999987764 556777755544333    237899999999999888889999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhcc---ccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920           91 VDSSDLRRLDDCKMELDNLLKEE---RLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      +|.+++.++..+..|+..+....   ...++|+++|+||+|+.+.....+....+..    ...+.++++|||++|.|++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sak~~~gI~  157 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKEAINVE  157 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTTTBSHH
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHH----HhcCCeEEEEcCCCCcCHH
Confidence            99999999999988887776543   2346899999999998665443333332221    1256789999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 029920          168 EGFDWLVQDIASRI  181 (185)
Q Consensus       168 ~l~~~l~~~~~~~~  181 (185)
                      ++|+++++.+.++.
T Consensus       158 e~f~~l~~~i~~~~  171 (184)
T d1vg8a_         158 QAFQTIARNALKQE  171 (184)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999998876643

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.97  E-value=2.5e-29  Score=170.55  Aligned_cols=165  Identities=45%  Similarity=0.830  Sum_probs=147.2

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSS   94 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   94 (185)
                      +.+||+++|++|||||||++++.++.+....++.+........++..+.++|.+|..............++++++++|+.
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSC   83 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETT
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhhhhh
Confidence            46899999999999999999999999988888888888888889999999999999999999899999999999999999


Q ss_pred             CcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHH
Q 029920           95 DLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLV  174 (185)
Q Consensus        95 ~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (185)
                      +..++.....++............|+++++||.|+.......++...+....+.. ..+++++|||++|.|++++|++|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~-~~~~~~~~SA~~g~gv~e~~~~l~  162 (169)
T d1upta_          84 DRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKD-RKWQIFKTSATKGTGLDEAMEWLV  162 (169)
T ss_dssp             CCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTT-SCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             hcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhc-CCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9889998888888877777777899999999999998888777777766544444 678999999999999999999999


Q ss_pred             HHHhhh
Q 029920          175 QDIASR  180 (185)
Q Consensus       175 ~~~~~~  180 (185)
                      +.+.++
T Consensus       163 ~~l~~k  168 (169)
T d1upta_         163 ETLKSR  168 (169)
T ss_dssp             HHHHTC
T ss_pred             HHHHhC
Confidence            988765

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.5e-30  Score=175.31  Aligned_cols=162  Identities=17%  Similarity=0.292  Sum_probs=123.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL   87 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~   87 (185)
                      +...+||+|+|++|||||||++++.++.+. .+.+|.+...  .....++  +.+.+||++|.......+..++..+|++
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   82 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   82 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceE
Confidence            345689999999999999999999887765 4555665443  2334443  6789999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhcc---ccCCCeEEEEeecCCCCCCC-CHHHHHHhcCcccccCccceEEEeecccCC
Q 029920           88 VWVVDSSDLRRLDDCKMELDNLLKEE---RLSGASLLILANKQDINGAL-TPTEIAKVLNLEAMDKTRHWKIVGCSAYTG  163 (185)
Q Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (185)
                      ++++|.+++.+++.+..|+..+....   ...+.|+++|+||+|+.+.. ..++......     .....++++|||++|
T Consensus        83 i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~-----~~~~~~~~e~Sak~~  157 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR-----DNGDYPYFETSAKDA  157 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH-----HTTCCCEEECCTTTC
T ss_pred             EEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHH-----HcCCCeEEEEcCCCC
Confidence            99999999999999888877765432   33568999999999986533 3333332221     113467999999999


Q ss_pred             CCHHHHHHHHHHHHhh
Q 029920          164 EGLLEGFDWLVQDIAS  179 (185)
Q Consensus       164 ~~i~~l~~~l~~~~~~  179 (185)
                      .||+++|++|++.+..
T Consensus       158 ~gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         158 TNVAAAFEEAVRRVLA  173 (174)
T ss_dssp             TTHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHhc
Confidence            9999999999988753

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-29  Score=173.54  Aligned_cols=160  Identities=17%  Similarity=0.195  Sum_probs=120.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCc--ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhh-HHHHHhhhcCCCEEE
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTS--VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTI-RSYWRNYFEQTDGLV   88 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~--~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~-~~~~~~~~~~~d~~i   88 (185)
                      -+||+++|++|+|||||++++.+..+.  ...++.+  .....+..++  ..+.+||+++.... ..+...+++.+|+++
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~i   82 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYL   82 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccccccccccccceee
Confidence            589999999999999999999987664  2333433  3344555554  56788897753222 225677889999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL  166 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (185)
                      +|||++++.++..+..|+..+......+++|+++|+||+|+.+.  ...++.. .+.     ...++++++|||++|.|+
T Consensus        83 lvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~-~~a-----~~~~~~~~e~Sak~g~~i  156 (172)
T d2g3ya1          83 IVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGR-ACA-----VVFDCKFIETSAAVQHNV  156 (172)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHH-HHH-----HHHTCEEEECBTTTTBSH
T ss_pred             eeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHH-HHH-----HHcCCeEEEEeCCCCcCH
Confidence            99999999999999999888877666678999999999998653  2233322 221     125678999999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q 029920          167 LEGFDWLVQDIASRI  181 (185)
Q Consensus       167 ~~l~~~l~~~~~~~~  181 (185)
                      +++|+.|++.+..++
T Consensus       157 ~~~f~~l~~~i~~rr  171 (172)
T d2g3ya1         157 KELFEGIVRQVRLRR  171 (172)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcc
Confidence            999999999887653

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.4e-30  Score=177.86  Aligned_cols=158  Identities=17%  Similarity=0.242  Sum_probs=123.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce-EEEEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF-NIKTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV   91 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~-~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   91 (185)
                      +.||+++|++|||||||++++..+.+. .+.+|.+. ....+..+  .+.+.+||++|++.+...+..+++.+|++++||
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF   81 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence            479999999999999999999988875 45666653 33333433  378889999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--------------HHHHHHhcCcccccCccceEEEe
Q 029920           92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--------------PTEIAKVLNLEAMDKTRHWKIVG  157 (185)
Q Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      |+++++||+....++...+.. ..++.|+++|+||+|+.....              .++...     .+......+|++
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~-~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~-----~a~~~~~~~y~E  155 (179)
T d1m7ba_          82 DISRPETLDSVLKKWKGEIQE-FCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN-----MAKQIGAATYIE  155 (179)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHH-HCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-----HHHHHTCSEEEE
T ss_pred             ecccCCCHHHHHHHHHHHHhc-cCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHH-----HHHHhCCCeEEE
Confidence            999999999999888877655 345899999999999854311              111111     111113468999


Q ss_pred             ecccCCCC-HHHHHHHHHHHHhh
Q 029920          158 CSAYTGEG-LLEGFDWLVQDIAS  179 (185)
Q Consensus       158 ~Sa~~~~~-i~~l~~~l~~~~~~  179 (185)
                      |||++|.| ++++|+.+.+.+.+
T Consensus       156 ~SAk~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         156 CSALQSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             CBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             EeCCCCCcCHHHHHHHHHHHHhc
Confidence            99999985 99999999988765

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.1e-30  Score=175.53  Aligned_cols=157  Identities=15%  Similarity=0.177  Sum_probs=120.6

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV   90 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   90 (185)
                      -+.+||+++|++|||||||++++.++.+....++..... ..+..++  +.+.+|||+|+....     +++.+|++++|
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~ilV   77 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFV   77 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEEE
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceEEEEEEeecccccccc-----cccccceeEEE
Confidence            457999999999999999999999998877666665443 3355555  679999999987643     57889999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhc--cccCCCeEEEEeecCCCCCCCC----HHHHHHhcCcccccCccceEEEeecccCCC
Q 029920           91 VDSSDLRRLDDCKMELDNLLKE--ERLSGASLLILANKQDINGALT----PTEIAKVLNLEAMDKTRHWKIVGCSAYTGE  164 (185)
Q Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~~ivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (185)
                      ||+++++||+.+..|...+...  ....+.|+++|+||.|+.....    ..+....     .....+.+|++|||++|.
T Consensus        78 fd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~-----~~~~~~~~~~e~SAk~~~  152 (175)
T d2bmja1          78 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARAL-----CADMKRCSYYETCATYGL  152 (175)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHH-----HHTSTTEEEEEEBTTTTB
T ss_pred             eecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHH-----HHHhCCCeEEEeCCCCCc
Confidence            9999999999998887776443  2345689999999999754322    2222221     122256789999999999


Q ss_pred             CHHHHHHHHHHHHhhh
Q 029920          165 GLLEGFDWLVQDIASR  180 (185)
Q Consensus       165 ~i~~l~~~l~~~~~~~  180 (185)
                      |++++|..+++.+.+.
T Consensus       153 ~v~~~F~~l~~~i~~~  168 (175)
T d2bmja1         153 NVDRVFQEVAQKVVTL  168 (175)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999887654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.9e-29  Score=171.17  Aligned_cols=154  Identities=19%  Similarity=0.346  Sum_probs=119.2

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEE--cCeEEEEEEcCCchhhHH-HHHhhhcCCCEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTY--QKYTLNIWDVGGQRTIRS-YWRNYFEQTDGLV   88 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~--~~~~~~~~D~~g~~~~~~-~~~~~~~~~d~~i   88 (185)
                      +.+||+++|++|||||||++++.++.+. ...++.+  ........  ....+.+||++|...... .+..+++++|+++
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            4689999999999999999999987765 3444444  22333333  346899999999877654 4677899999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccC---C
Q 029920           89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYT---G  163 (185)
Q Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~  163 (185)
                      +|||++++++|+.+..|+..+.+.....+.|+++|+||+|+.+.  ...++.....      ...++++++|||++   +
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~------~~~~~~~~e~SAkt~~~~  154 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFA------DTHSMPLFETSAKNPNDN  154 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH------HHTTCCEEECCSSSGGGG
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHH------HHCCCEEEEEecccCCcC
Confidence            99999999999999999999887766678999999999998654  2333333221      12566899999997   5


Q ss_pred             CCHHHHHHHHH
Q 029920          164 EGLLEGFDWLV  174 (185)
Q Consensus       164 ~~i~~l~~~l~  174 (185)
                      .||+++|++|+
T Consensus       155 ~~V~e~F~~lA  165 (165)
T d1z06a1         155 DHVEAIFMTLA  165 (165)
T ss_dssp             SCHHHHHHHHC
T ss_pred             cCHHHHHHHhC
Confidence            59999998863

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.96  E-value=9.1e-29  Score=170.24  Aligned_cols=173  Identities=31%  Similarity=0.558  Sum_probs=139.5

Q ss_pred             HHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCC
Q 029920            5 SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQT   84 (185)
Q Consensus         5 ~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   84 (185)
                      +.++.++..++..||+++|++|||||||+++|.+..+....++.+.+...+..++..+..+|+.+.......+..+....
T Consensus         2 ~~~~~~~~~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (186)
T d1f6ba_           2 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAI   81 (186)
T ss_dssp             HHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGC
T ss_pred             chHHhccccCCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeEEEecccccccccccchhhhhhHHhhhhccc
Confidence            56777777889999999999999999999999999988878888888888888999999999999998888888999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCccccc-----------Cccce
Q 029920           85 DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMD-----------KTRHW  153 (185)
Q Consensus        85 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----------~~~~~  153 (185)
                      +++++++|+++...+......+..........+.|+++++||.|+.......++...+......           ....+
T Consensus        82 ~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (186)
T d1f6ba_          82 NGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPL  161 (186)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCE
T ss_pred             ceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCC
Confidence            9999999999999999888877777776677789999999999998877777766555432111           22457


Q ss_pred             EEEeecccCCCCHHHHHHHHHHHH
Q 029920          154 KIVGCSAYTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       154 ~~~~~Sa~~~~~i~~l~~~l~~~~  177 (185)
                      ++++|||++|+|++|+|+||.+.+
T Consensus       162 ~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         162 EVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHhh
Confidence            899999999999999999998754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.6e-28  Score=165.83  Aligned_cols=158  Identities=31%  Similarity=0.629  Sum_probs=138.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR   97 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   97 (185)
                      ||+++|++|||||||+++|.++.+..+.++.+.........+....++|++|...+......+...++++++++|.++..
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~   81 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE   81 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchh
Confidence            79999999999999999999999999999999999888888999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCccc------ccCccceEEEeecccCCCCHHHHHH
Q 029920           98 RLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEA------MDKTRHWKIVGCSAYTGEGLLEGFD  171 (185)
Q Consensus        98 s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (185)
                      ++.....++..........+.|+++++||.|+.......++...+....      ......+++++|||++|+|++|+|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~  161 (166)
T d2qtvb1          82 RFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ  161 (166)
T ss_dssp             GHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHH
T ss_pred             hhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHH
Confidence            9998888888877776777899999999999988777777666554322      2223567899999999999999999


Q ss_pred             HHHH
Q 029920          172 WLVQ  175 (185)
Q Consensus       172 ~l~~  175 (185)
                      ||.+
T Consensus       162 ~l~~  165 (166)
T d2qtvb1         162 WLSQ  165 (166)
T ss_dssp             HHTT
T ss_pred             HHhC
Confidence            9864

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=1.7e-27  Score=163.31  Aligned_cols=162  Identities=20%  Similarity=0.167  Sum_probs=115.5

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEcCeEEEEEEcCCchh--------hHHHHHhhhc
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQKYTLNIWDVGGQRT--------IRSYWRNYFE   82 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~   82 (185)
                      ..-+|+|+|.+|+|||||+|+|++......+.    |...........+..+.++||||...        +......+++
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~   83 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA   83 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccccc
Confidence            34579999999999999999999987644332    33355556677889999999999633        2333445678


Q ss_pred             CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccC
Q 029920           83 QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYT  162 (185)
Q Consensus        83 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (185)
                      .+|++++|+|++++....  ..++...++. ...+.|+++|+||+|+...  .++....+...    .....++++||++
T Consensus        84 ~ad~il~v~D~~~~~~~~--~~~i~~~l~~-~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~----~~~~~~~~iSA~~  154 (178)
T d1wf3a1          84 DVNAVVWVVDLRHPPTPE--DELVARALKP-LVGKVPILLVGNKLDAAKY--PEEAMKAYHEL----LPEAEPRMLSALD  154 (178)
T ss_dssp             SCSEEEEEEETTSCCCHH--HHHHHHHHGG-GTTTSCEEEEEECGGGCSS--HHHHHHHHHHT----STTSEEEECCTTC
T ss_pred             cccceeeeechhhhhccc--ccchhhheec-cccchhhhhhhcccccccC--HHHHHHHHHhh----cccCceEEEecCC
Confidence            999999999998864433  3444555543 2346899999999998654  22222222211    1334678899999


Q ss_pred             CCCHHHHHHHHHHHHhhhcccCC
Q 029920          163 GEGLLEGFDWLVQDIASRIYLLD  185 (185)
Q Consensus       163 ~~~i~~l~~~l~~~~~~~~~~~~  185 (185)
                      |.|+++++++|.+.+.+.-+++|
T Consensus       155 ~~gi~~L~~~i~~~lpe~p~~~p  177 (178)
T d1wf3a1         155 ERQVAELKADLLALMPEGPFFYP  177 (178)
T ss_dssp             HHHHHHHHHHHHTTCCBCCCSSC
T ss_pred             CCCHHHHHHHHHHhCCCCCCCCC
Confidence            99999999999998877655554

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.5e-26  Score=155.99  Aligned_cols=148  Identities=22%  Similarity=0.346  Sum_probs=108.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEcCeEEEEEEcCCchhh--------HHHHHhhhcCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQKYTLNIWDVGGQRTI--------RSYWRNYFEQT   84 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~~~   84 (185)
                      +||+++|.+|||||||+|+|++........    +.......+...+..+.++|+||....        ......++..+
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   81 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQA   81 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHhc
Confidence            799999999999999999999887653332    333445567778899999999994321        12234556889


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920           85 DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE  164 (185)
Q Consensus        85 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (185)
                      |++++++|..+..++.....+ ..++.. ...+.|+++|+||+|+.....           ........+++++||++|.
T Consensus        82 d~~i~~~d~~~~~~~~~~~~~-~~~~~~-~~~~~~iilv~NK~Dl~~~~~-----------~~~~~~~~~~~~iSAk~~~  148 (161)
T d2gj8a1          82 DRVLFMVDGTTTDAVDPAEIW-PEFIAR-LPAKLPITVVRNKADITGETL-----------GMSEVNGHALIRLSARTGE  148 (161)
T ss_dssp             SEEEEEEETTTCCCCSHHHHC-HHHHHH-SCTTCCEEEEEECHHHHCCCC-----------EEEEETTEEEEECCTTTCT
T ss_pred             cccceeeccccccchhhhhhh-hhhhhh-cccccceeeccchhhhhhhHH-----------HHHHhCCCcEEEEECCCCC
Confidence            999999999987766554433 333333 224689999999999754321           1122256789999999999


Q ss_pred             CHHHHHHHHHHHH
Q 029920          165 GLLEGFDWLVQDI  177 (185)
Q Consensus       165 ~i~~l~~~l~~~~  177 (185)
                      |+++++++|.+.+
T Consensus       149 gi~~L~~~l~~~l  161 (161)
T d2gj8a1         149 GVDVLRNHLKQSM  161 (161)
T ss_dssp             THHHHHHHHHHHC
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999998763

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=3.4e-27  Score=164.24  Aligned_cols=165  Identities=22%  Similarity=0.313  Sum_probs=131.5

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSS   94 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   94 (185)
                      +.+||+++|+.|||||||++++....+. +.||.|+....+......+.+||++|++.+...+..+++.++++++|+|.+
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~-~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~   79 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS-GVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS   79 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS-CCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGG
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC-CCceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeeecc
Confidence            4689999999999999999999888775 569999998888899999999999999999999999999999999999988


Q ss_pred             Ccc----------cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC------------------CHHH----HHHhc
Q 029920           95 DLR----------RLDDCKMELDNLLKEERLSGASLLILANKQDINGAL------------------TPTE----IAKVL  142 (185)
Q Consensus        95 ~~~----------s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~------------------~~~~----~~~~~  142 (185)
                      +..          .+.+....|..++......+.|+++++||.|+....                  ....    +...+
T Consensus        80 ~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f  159 (200)
T d2bcjq2          80 EYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMF  159 (200)
T ss_dssp             GGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHH
T ss_pred             chhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHH
Confidence            754          455667777888777677789999999999964210                  0111    11111


Q ss_pred             CcccccCccceEEEeecccCCCCHHHHHHHHHHHHhhh
Q 029920          143 NLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       143 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (185)
                      ........+.+.+++|||++|.|++++|+.+.+.+.++
T Consensus       160 ~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         160 VDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             HTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence            11111223567789999999999999999999988754

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.94  E-value=2.4e-26  Score=157.68  Aligned_cols=161  Identities=16%  Similarity=0.192  Sum_probs=111.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCccccc------Ccc----eEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISP------TLG----FNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQ   83 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~------t~~----~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~   83 (185)
                      .+.++|+++|++|+|||||+|+|++.......+      ..+    .....+...+..+.++|+||+..+.......+..
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~   82 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI   82 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhh
Confidence            356899999999999999999998754322111      111    1222345677899999999999999988999999


Q ss_pred             CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCc--ccccCccceEEEeeccc
Q 029920           84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNL--EAMDKTRHWKIVGCSAY  161 (185)
Q Consensus        84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~  161 (185)
                      +|++++|+|+.+....+. ...+.. +.   ..++|+++|+||+|+......+.....+..  .........+++++||+
T Consensus        83 ~d~~ilv~d~~~g~~~~~-~~~~~~-~~---~~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~  157 (179)
T d1wb1a4          83 IDLALIVVDAKEGPKTQT-GEHMLI-LD---HFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK  157 (179)
T ss_dssp             CCEEEEEEETTTCSCHHH-HHHHHH-HH---HTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred             ccccccccccccccchhh-hhhhhh-hh---hcCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Confidence            999999999998543322 222222 22   237999999999999765332222111111  11122245689999999


Q ss_pred             CCCCHHHHHHHHHHHHhh
Q 029920          162 TGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~  179 (185)
                      +|.|++++++.|.+.+.+
T Consensus       158 ~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         158 TGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHhcCCc
Confidence            999999999999988754

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.93  E-value=1.2e-26  Score=159.65  Aligned_cols=160  Identities=18%  Similarity=0.185  Sum_probs=98.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCch-----------h----hHHHHHhhhc
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQR-----------T----IRSYWRNYFE   82 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~-----------~----~~~~~~~~~~   82 (185)
                      .|+++|.+|+|||||+|+|++.... .+.+.+.+.....+....++++||||..           .    +........+
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~-~~~~~g~T~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAK   80 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTSCEEEEETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCce-eeCCCCEeecccccccccceecccCCceeccccccccccccchhhhhhhhhccc
Confidence            6899999999999999999987763 3333332222222222346789999941           1    1122334467


Q ss_pred             CCCEEEEEEeCCCcccHHHHHHH------HHHHHhccccCCCeEEEEeecCCCCCCCCH--HHHHHhcCcccccCccceE
Q 029920           83 QTDGLVWVVDSSDLRRLDDCKME------LDNLLKEERLSGASLLILANKQDINGALTP--TEIAKVLNLEAMDKTRHWK  154 (185)
Q Consensus        83 ~~d~~i~v~d~~~~~s~~~~~~~------~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~  154 (185)
                      .+|++++|+|+.++.........      -..++......++|+++|+||+|+.+....  ......+.. .... ....
T Consensus        81 ~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~-~~~~-~~~~  158 (184)
T d2cxxa1          81 NIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEV-PLSE-IDKV  158 (184)
T ss_dssp             GCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTC-CGGG-HHHH
T ss_pred             ccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhhhHHHHHHHHHHHhcc-cccc-cCCe
Confidence            89999999999754222111000      011111122237999999999997653211  111222221 1111 3445


Q ss_pred             EEeecccCCCCHHHHHHHHHHHHhhh
Q 029920          155 IVGCSAYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       155 ~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (185)
                      ++++||++|.|+++++++|.+.+.++
T Consensus       159 ~~~vSA~~g~gi~~L~~~i~~~l~e~  184 (184)
T d2cxxa1         159 FIPISAKFGDNIERLKNRIFEVIRER  184 (184)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHccCC
Confidence            88999999999999999999988764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=8.9e-26  Score=153.72  Aligned_cols=154  Identities=19%  Similarity=0.242  Sum_probs=102.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEcCeEEEEEEcCCch---------hhHHHHHhhhcCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQKYTLNIWDVGGQR---------TIRSYWRNYFEQT   84 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~~~~~~   84 (185)
                      +|+++|++|+|||||+++|++......+.    |.......+......+.++|++|..         ........++..+
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a   81 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA   81 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence            68999999999999999999877654333    3334455677788999999999931         1233445557889


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920           85 DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE  164 (185)
Q Consensus        85 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (185)
                      |++++++|.++...... .. +...+..   .++|+++|+||+|+.+....+...+....      ....++++||++|.
T Consensus        82 d~i~~~~~~~~~~~~~~-~~-~~~~l~~---~~~pviiv~NK~Dl~~~~~~~~~~~~~~~------~~~~~i~iSAk~g~  150 (171)
T d1mkya1          82 DLVLFVVDGKRGITKED-ES-LADFLRK---STVDTILVANKAENLREFEREVKPELYSL------GFGEPIPVSAEHNI  150 (171)
T ss_dssp             SEEEEEEETTTCCCHHH-HH-HHHHHHH---HTCCEEEEEESCCSHHHHHHHTHHHHGGG------SSCSCEECBTTTTB
T ss_pred             cEEEEeecccccccccc-cc-ccccccc---ccccccccchhhhhhhhhhhHHHHHHHhc------CCCCeEEEecCCCC
Confidence            99999999987544332 22 2222222   37899999999998543222111111111      23346889999999


Q ss_pred             CHHHHHHHHHHHHhhhcc
Q 029920          165 GLLEGFDWLVQDIASRIY  182 (185)
Q Consensus       165 ~i~~l~~~l~~~~~~~~~  182 (185)
                      |+++++++|.+.+.++..
T Consensus       151 gid~L~~~i~~~l~e~~~  168 (171)
T d1mkya1         151 NLDTMLETIIKKLEEKGL  168 (171)
T ss_dssp             SHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHhCCCCCC
Confidence            999999999999987654

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=1.5e-25  Score=153.72  Aligned_cols=154  Identities=21%  Similarity=0.257  Sum_probs=106.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCccc---ccCcceEEEEEEE-cCeEEEEEEcCCchh-------hHHHHHhhhcCCCE
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVI---SPTLGFNIKTVTY-QKYTLNIWDVGGQRT-------IRSYWRNYFEQTDG   86 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~---~~t~~~~~~~~~~-~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d~   86 (185)
                      .|+++|.+|+|||||+|+|++......   ..+.......... .+..+++|||||...       .......++..+++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV   82 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence            599999999999999999998876432   2233344433333 457899999999322       22334456788999


Q ss_pred             EEEEEeCCCc--ccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920           87 LVWVVDSSDL--RRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE  164 (185)
Q Consensus        87 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (185)
                      +++++|....  ........++.....  ...++|+++|+||+|+.+....++..+.+..      .+.+++++||++|.
T Consensus        83 ~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~------~~~~~~~iSA~tg~  154 (180)
T d1udxa2          83 LLYVLDAADEPLKTLETLRKEVGAYDP--ALLRRPSLVALNKVDLLEEEAVKALADALAR------EGLAVLPVSALTGA  154 (180)
T ss_dssp             EEEEEETTSCHHHHHHHHHHHHHHHCH--HHHHSCEEEEEECCTTSCHHHHHHHHHHHHT------TTSCEEECCTTTCT
T ss_pred             hhhhcccccccccchhhhhhhhhcccc--ccchhhhhhhhhhhhhhhHHHHHHHHHHHHh------cCCeEEEEEcCCCC
Confidence            9999998753  222222232222211  2235899999999999776444444443332      56689999999999


Q ss_pred             CHHHHHHHHHHHHhh
Q 029920          165 GLLEGFDWLVQDIAS  179 (185)
Q Consensus       165 ~i~~l~~~l~~~~~~  179 (185)
                      |++++++.|.+.+.+
T Consensus       155 gid~L~~~i~~~l~~  169 (180)
T d1udxa2         155 GLPALKEALHALVRS  169 (180)
T ss_dssp             THHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999998864

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=6.8e-26  Score=157.78  Aligned_cols=164  Identities=21%  Similarity=0.340  Sum_probs=121.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSS   94 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   94 (185)
                      +.+||+++|++|||||||++++.  ....+.||.|+....+......+.+||++|++.++..+..+++.++++++++|.+
T Consensus         1 r~iKivllG~~~vGKTsll~r~~--f~~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~   78 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR--IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSS   78 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH--HHHSCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh--cCCCCCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcC
Confidence            35899999999999999999993  2346678999999999999999999999999999999999999999999999998


Q ss_pred             Ccc----------cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC------------------CCHHHHHH----hc
Q 029920           95 DLR----------RLDDCKMELDNLLKEERLSGASLLILANKQDINGA------------------LTPTEIAK----VL  142 (185)
Q Consensus        95 ~~~----------s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~------------------~~~~~~~~----~~  142 (185)
                      +..          ++.....++..++......+.|+++++||+|+.+.                  .......+    .+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f  158 (200)
T d1zcba2          79 EFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECF  158 (200)
T ss_dssp             CTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHH
T ss_pred             CcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHH
Confidence            743          46677778888888777788999999999996421                  11111111    11


Q ss_pred             C-cccccCccceEEEeecccCCCCHHHHHHHHHHHHhhh
Q 029920          143 N-LEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       143 ~-~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (185)
                      . .........+.++.|||+++.||+++|+.+.+.+.++
T Consensus       159 ~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         159 RGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             HTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence            1 1111112345677899999999999999999887654

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=2e-25  Score=154.57  Aligned_cols=162  Identities=23%  Similarity=0.367  Sum_probs=124.6

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSS   94 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   94 (185)
                      +.+||+++|+.|||||||+++|....+    +|.++....+......+.+||++|++.+...+..+++.++++++|+|++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~   76 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHE----AGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALS   76 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHS----CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCC----CCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeec
Confidence            468999999999999999999976544    4556666778889999999999999999999999999999999999998


Q ss_pred             CcccH----------HHHHHHHHHHHhccccCCCeEEEEeecCCCCC-----------------CCCHHHHH-----Hhc
Q 029920           95 DLRRL----------DDCKMELDNLLKEERLSGASLLILANKQDING-----------------ALTPTEIA-----KVL  142 (185)
Q Consensus        95 ~~~s~----------~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~-----------------~~~~~~~~-----~~~  142 (185)
                      +..++          .+...++..++......+.|+++++||+|+..                 .....+..     ...
T Consensus        77 ~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  156 (195)
T d1svsa1          77 DYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFE  156 (195)
T ss_dssp             GGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHH
T ss_pred             ccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHH
Confidence            87654          34556667777666677899999999998521                 11111111     111


Q ss_pred             CcccccCccceEEEeecccCCCCHHHHHHHHHHHHhhh
Q 029920          143 NLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       143 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (185)
                      ..........+++++|||+++.||+++|+.+.+.+.++
T Consensus       157 ~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         157 DLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             TTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence            11112223567888999999999999999999887654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=1e-25  Score=151.70  Aligned_cols=145  Identities=24%  Similarity=0.344  Sum_probs=108.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEcCeEEEEEEcCCchh--------h-HHHHHhhhcC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQKYTLNIWDVGGQRT--------I-RSYWRNYFEQ   83 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~--------~-~~~~~~~~~~   83 (185)
                      +||+++|.+|+|||||+|+|++......+.    +.......+...+..+.++||||...        . .......+..
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   80 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK   80 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHh
Confidence            689999999999999999999876543333    33344455677889999999999321        1 1223444678


Q ss_pred             CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCC
Q 029920           84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTG  163 (185)
Q Consensus        84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (185)
                      +|++++|+|++++.......-  ...     ....++++++||.|+.+.....++...+.       .+.+++++||++|
T Consensus        81 ad~ii~v~d~~~~~~~~~~~~--~~~-----~~~~~~i~~~~k~d~~~~~~~~~~~~~~~-------~~~~~~~vSA~~g  146 (160)
T d1xzpa2          81 ADIVLFVLDASSPLDEEDRKI--LER-----IKNKRYLVVINKVDVVEKINEEEIKNKLG-------TDRHMVKISALKG  146 (160)
T ss_dssp             CSEEEEEEETTSCCCHHHHHH--HHH-----HTTSSEEEEEEECSSCCCCCHHHHHHHHT-------CSTTEEEEEGGGT
T ss_pred             CCEEEEEEeCCCCcchhhhhh--hhh-----cccccceeeeeeccccchhhhHHHHHHhC-------CCCcEEEEECCCC
Confidence            999999999998766543221  111     13578999999999998888887777665       3456899999999


Q ss_pred             CCHHHHHHHHHH
Q 029920          164 EGLLEGFDWLVQ  175 (185)
Q Consensus       164 ~~i~~l~~~l~~  175 (185)
                      .|+++|+++|.+
T Consensus       147 ~gi~~L~~~I~k  158 (160)
T d1xzpa2         147 EGLEKLEESIYR  158 (160)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHh
Confidence            999999999865

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=7.2e-25  Score=151.01  Aligned_cols=161  Identities=20%  Similarity=0.188  Sum_probs=108.5

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEcCeEEEEEEcCCchhh------------HHH
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQKYTLNIWDVGGQRTI------------RSY   76 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~------------~~~   76 (185)
                      -+..+||+++|++|+|||||+|+|++........    +.......+..++..+.++|+||....            ...
T Consensus         5 ~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           5 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             CCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHH
Confidence            3457999999999999999999999887643332    222334456778899999999995432            233


Q ss_pred             HHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceE
Q 029920           77 WRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWK  154 (185)
Q Consensus        77 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~  154 (185)
                      ...+++.+|++++|+|+..+..-..  ..+...+..   .+.|+|+|+||+|+....+  ..+..+.+... .......+
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~~~~--~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~  158 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGITRQD--QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREK-LYFIDYSP  158 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHH-CGGGTTSC
T ss_pred             HHHHHhcCCEEEEeecccccchhhH--HHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHH-hcccCCCe
Confidence            4555678999999999987543222  222333322   3789999999999865432  23333333221 22224567


Q ss_pred             EEeecccCCCCHHHHHHHHHHHHhh
Q 029920          155 IVGCSAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       155 ~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                      ++++||++|.|+++|++.|.+.+.+
T Consensus       159 i~~vSa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         159 LIFTSADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999776644

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=4.4e-23  Score=144.34  Aligned_cols=159  Identities=26%  Similarity=0.357  Sum_probs=114.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEE---cCeEEEEEEcCCchhhH-HHHHhhhcCCCEEEEEEeC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTY---QKYTLNIWDVGGQRTIR-SYWRNYFEQTDGLVWVVDS   93 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~-~~~~~~~~~~d~~i~v~d~   93 (185)
                      +|+++|++|||||||+++|.+..+....++.+.....+.+   ....+.+||++|++.++ ..+..++..++.+++|+|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~   81 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDS   81 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEc
Confidence            6999999999999999999998887777888877777665   35789999999998875 5667888999999999999


Q ss_pred             CCccc-HHHHHHHHHHHHhccc--cCCCeEEEEeecCCCCCCCCHHHHHHhcCcc-------------------------
Q 029920           94 SDLRR-LDDCKMELDNLLKEER--LSGASLLILANKQDINGALTPTEIAKVLNLE-------------------------  145 (185)
Q Consensus        94 ~~~~s-~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-------------------------  145 (185)
                      ++..+ ......++..++....  ..++|+++++||+|+......+++.+.+..+                         
T Consensus        82 ~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~  161 (207)
T d2fh5b1          82 AAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQL  161 (207)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCS
T ss_pred             ccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccccccceeehhhhhhhhh
Confidence            98655 3555566666554322  2358999999999998776665544332100                         


Q ss_pred             --------cccCccceEEEeecccCCCC------HHHHHHHHHHH
Q 029920          146 --------AMDKTRHWKIVGCSAYTGEG------LLEGFDWLVQD  176 (185)
Q Consensus       146 --------~~~~~~~~~~~~~Sa~~~~~------i~~l~~~l~~~  176 (185)
                              .........++++|++++.+      ++++-+||.+.
T Consensus       162 ~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~~  206 (207)
T d2fh5b1         162 GKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  206 (207)
T ss_dssp             SCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             cccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHHh
Confidence                    00012345789999999886      77777777653

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.91  E-value=3.6e-24  Score=148.62  Aligned_cols=161  Identities=19%  Similarity=0.135  Sum_probs=97.4

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCC-cccccCcceEEEEE-EEcCeEEEEEEcCCch-------------hhHHH
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDT-SVISPTLGFNIKTV-TYQKYTLNIWDVGGQR-------------TIRSY   76 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~-~~~~~t~~~~~~~~-~~~~~~~~~~D~~g~~-------------~~~~~   76 (185)
                      +..+.++|+|+|++|+|||||+|+|++... ...++....+.... ......+.+.|+++..             .....
T Consensus        19 p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~   98 (195)
T d1svia_          19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIET   98 (195)
T ss_dssp             CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccccceEEEEEeeccccccccccchhhhHHhh
Confidence            344456999999999999999999998653 22222222211111 1112345567777621             11122


Q ss_pred             HHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEE
Q 029920           77 WRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIV  156 (185)
Q Consensus        77 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (185)
                      .......+|++++++|+.++..-. ..+. ...+..   .++|+++|+||+|+.......+..+.+... +......+++
T Consensus        99 ~~~~~~~~~~vi~viD~~~~~~~~-~~~~-~~~l~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~-l~~~~~~~~~  172 (195)
T d1svia_          99 YITTREELKAVVQIVDLRHAPSND-DVQM-YEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQT-LNIDPEDELI  172 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHH-HHHH-HHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHH-HTCCTTSEEE
T ss_pred             hhccccchhhhhhhhhcccccccc-cccc-cccccc---ccCcceechhhccccCHHHHHHHHHHHHHH-hcccCCCCEE
Confidence            333456779999999998653321 1222 222232   378999999999987655544443333221 2222667899


Q ss_pred             eecccCCCCHHHHHHHHHHHHh
Q 029920          157 GCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       157 ~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      ++||++|.|+++++++|.+.+.
T Consensus       173 ~~SA~~~~gi~el~~~i~~~l~  194 (195)
T d1svia_         173 LFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHT
T ss_pred             EEeCCCCCCHHHHHHHHHHHhC
Confidence            9999999999999999998874

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.90  E-value=2.4e-24  Score=152.86  Aligned_cols=159  Identities=21%  Similarity=0.210  Sum_probs=103.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcc-----cccCcceEEE----------------EEEEcCeEEEEEEcCCchhhHH
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSV-----ISPTLGFNIK----------------TVTYQKYTLNIWDVGGQRTIRS   75 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~-----~~~t~~~~~~----------------~~~~~~~~~~~~D~~g~~~~~~   75 (185)
                      +.|+|+|++|+|||||+++|++.....     ..........                .+..++..+.++||||+..|..
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~   85 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTT   85 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTT
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccc
Confidence            449999999999999999997642211     1111111111                1223456899999999999888


Q ss_pred             HHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHH---HHHHhc----------
Q 029920           76 YWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPT---EIAKVL----------  142 (185)
Q Consensus        76 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~---~~~~~~----------  142 (185)
                      .....+..+|++|+|+|+.+.-.... ...+...    ...++|+|+++||+|+.......   .+...+          
T Consensus        86 ~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~----~~~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~  160 (227)
T d1g7sa4          86 LRKRGGALADLAILIVDINEGFKPQT-QEALNIL----RMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQK  160 (227)
T ss_dssp             SBCSSSBSCSEEEEEEETTTCCCHHH-HHHHHHH----HHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHH
T ss_pred             cchhcccccceEEEEEecccCcccch-hHHHHHh----hcCCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHH
Confidence            77778899999999999987433222 2222222    22379999999999986543210   000000          


Q ss_pred             ------------Cc-----cc----ccCccceEEEeecccCCCCHHHHHHHHHHHHhhh
Q 029920          143 ------------NL-----EA----MDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       143 ------------~~-----~~----~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (185)
                                  ..     ..    .......+++++||++|.|+++|++.|.....+.
T Consensus       161 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~  219 (227)
T d1g7sa4         161 LDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY  219 (227)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence                        00     00    0012356899999999999999999998877554

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=2.2e-24  Score=152.43  Aligned_cols=164  Identities=23%  Similarity=0.294  Sum_probs=127.8

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDS   93 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   93 (185)
                      +...||+++|+.|||||||++++....   ..||.|+....+..++..+++||++|++.++..|..+++.++++++|+|.
T Consensus         4 k~~~KilllG~~~vGKTsll~~~~~~~---~~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~   80 (221)
T d1azta2           4 RATHRLLLLGAGESGKSTIVKQMRILH---VVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVAS   80 (221)
T ss_dssp             HHSEEEEEECSTTSSHHHHHHHHHHHH---CCCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEET
T ss_pred             hhcCEEEEECCCCCCHHHHHHHHhcCC---cCCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEEc
Confidence            356899999999999999999996543   45899999889999999999999999999999999999999999999998


Q ss_pred             CCc----------ccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC------CCHHH--------------------
Q 029920           94 SDL----------RRLDDCKMELDNLLKEERLSGASLLILANKQDINGA------LTPTE--------------------  137 (185)
Q Consensus        94 ~~~----------~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~------~~~~~--------------------  137 (185)
                      ++.          .++.+....+..++......+.|+++++||+|+.+.      .....                    
T Consensus        81 s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~  160 (221)
T d1azta2          81 SSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGE  160 (221)
T ss_dssp             TGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTC
T ss_pred             cccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCCC
Confidence            853          356677788888888877788999999999997432      11100                    


Q ss_pred             ------H----HHhcC---cccccCccceEEEeecccCCCCHHHHHHHHHHHHhhh
Q 029920          138 ------I----AKVLN---LEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR  180 (185)
Q Consensus       138 ------~----~~~~~---~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (185)
                            .    ...+.   .........+.++.+||.+..|++.+|+.+.+.|.++
T Consensus       161 ~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~  216 (221)
T d1azta2         161 DPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM  216 (221)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHH
Confidence                  0    01110   0001112345678899999999999999988877653

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.90  E-value=7.1e-24  Score=147.15  Aligned_cols=162  Identities=19%  Similarity=0.139  Sum_probs=106.5

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCccc------ccCcc--eEEEEE---------------------EEcCeEEE
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVI------SPTLG--FNIKTV---------------------TYQKYTLN   63 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~------~~t~~--~~~~~~---------------------~~~~~~~~   63 (185)
                      ++..++|+++|+.++|||||+++|.+......      ..+..  +.....                     ......+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            45678999999999999999999987433111      11111  111111                     11125689


Q ss_pred             EEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcC
Q 029920           64 IWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLN  143 (185)
Q Consensus        64 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~  143 (185)
                      ++||||+..|.......+..+|++++|+|+.+........+.+......   ...++++++||+|+.+.....+......
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~~~~~~  158 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIK  158 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh---cCccceeeeecccchhhHHHHHHHHHHH
Confidence            9999999999999988899999999999999853223333333332222   1356889999999876532222221111


Q ss_pred             cc-cccCccceEEEeecccCCCCHHHHHHHHHHHH
Q 029920          144 LE-AMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       144 ~~-~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (185)
                      .. .......++++++||++|.|+++|++.+.+.+
T Consensus       159 ~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         159 EFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            10 01112457899999999999999999987765

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.90  E-value=9.2e-24  Score=145.34  Aligned_cols=156  Identities=22%  Similarity=0.255  Sum_probs=102.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCccc---ccCcceEEEEEEE-cCeEEEEEEcCCchh-------hHHHHHhhhcCCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVI---SPTLGFNIKTVTY-QKYTLNIWDVGGQRT-------IRSYWRNYFEQTD   85 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~---~~t~~~~~~~~~~-~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d   85 (185)
                      .+|+++|++|+|||||+|+|++......   ..|.........+ ++..+.++||||...       ........+..++
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            3699999999999999999988776422   2344444444444 456899999999522       1122233456789


Q ss_pred             EEEEEEeCCCcccHHHH--HHHH--HHHHhccccCCCeEEEEeecCCCCCCCCH-HHHHHhcCcccccCccceEEEeecc
Q 029920           86 GLVWVVDSSDLRRLDDC--KMEL--DNLLKEERLSGASLLILANKQDINGALTP-TEIAKVLNLEAMDKTRHWKIVGCSA  160 (185)
Q Consensus        86 ~~i~v~d~~~~~s~~~~--~~~~--~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (185)
                      .++++++..........  ....  ..........++|+++|+||+|+.+.... +.+...+.       .+.+++.+||
T Consensus        82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~-------~~~~v~~iSA  154 (185)
T d1lnza2          82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT-------DDYPVFPISA  154 (185)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC-------SCCCBCCCSS
T ss_pred             hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHhc-------cCCcEEEEEC
Confidence            99999887654322211  1111  12222233456899999999999754211 12222221       4567899999


Q ss_pred             cCCCCHHHHHHHHHHHHhh
Q 029920          161 YTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~~  179 (185)
                      ++|.|+++|++.|.+.+.+
T Consensus       155 ~~g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         155 VTREGLRELLFEVANQLEN  173 (185)
T ss_dssp             CCSSTTHHHHHHHHHHHTS
T ss_pred             CCCCCHHHHHHHHHHhhhh
Confidence            9999999999999998854

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.90  E-value=4.4e-23  Score=144.16  Aligned_cols=164  Identities=20%  Similarity=0.151  Sum_probs=106.8

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCcccc------c--CcceEEEEE--------------------------EE
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTSVIS------P--TLGFNIKTV--------------------------TY   57 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~------~--t~~~~~~~~--------------------------~~   57 (185)
                      +.++.++|+++|+.++|||||+++|.+.......      .  ..+.....+                          ..
T Consensus         4 ~~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (205)
T d2qn6a3           4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPK   83 (205)
T ss_dssp             CCCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCE
T ss_pred             CCCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeecccc
Confidence            3456689999999999999999999864321100      0  011111110                          00


Q ss_pred             cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHH
Q 029920           58 QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTE  137 (185)
Q Consensus        58 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~  137 (185)
                      ....+.++|+||+..|.......+..+|++|+|+|+.+.-.-....+.+......   ...|+||++||+|+.+......
T Consensus        84 ~~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~---~i~~iIV~vNK~Dl~~~~~~~~  160 (205)
T d2qn6a3          84 FLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALS  160 (205)
T ss_dssp             EEEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECGGGSCHHHHHH
T ss_pred             ceEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc---CCceeeeccccCCCccchHHHH
Confidence            1246899999999999988888899999999999998753222223333322222   1358999999999976533322


Q ss_pred             HHHhcCc-ccccCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          138 IAKVLNL-EAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       138 ~~~~~~~-~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      ....... ........+|++++||++|.|++++++.|..++.
T Consensus       161 ~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         161 QYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence            2211111 0111224678999999999999999999887764

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.88  E-value=2.1e-22  Score=139.20  Aligned_cols=158  Identities=16%  Similarity=0.063  Sum_probs=107.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCC-------CCc--------c----cccCcceEEEEEEEcCeEEEEEEcCCchhhHH
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGE-------DTS--------V----ISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRS   75 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~-------~~~--------~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~   75 (185)
                      +.++|+++|+.++|||||+++|.+.       ...        .    ..-|.......+.+.+..+.++||||+..|..
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence            5689999999999999999998631       100        0    11122233445667789999999999999999


Q ss_pred             HHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH-H----HHHHhcCcccccCc
Q 029920           76 YWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP-T----EIAKVLNLEAMDKT  150 (185)
Q Consensus        76 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~----~~~~~~~~~~~~~~  150 (185)
                      .....+..+|++++|+|+.+.-.- ...+.+......   ...|+||++||+|+...... +    ++...+...... .
T Consensus        82 ~~~~~~~~aD~allVVda~~G~~~-QT~~~~~~a~~~---~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~-~  156 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDGPMP-QTREHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK-G  156 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCH-HHHHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC-T
T ss_pred             HHHHHHhhcCeEEEEEEcCCCCch-hHHHHHHHHHHh---cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCC-c
Confidence            888889999999999999985432 233333333222   24679999999998653222 1    122222111111 1


Q ss_pred             cceEEEeecccCC----------CCHHHHHHHHHHHH
Q 029920          151 RHWKIVGCSAYTG----------EGLLEGFDWLVQDI  177 (185)
Q Consensus       151 ~~~~~~~~Sa~~~----------~~i~~l~~~l~~~~  177 (185)
                      ...|++++||++|          .++.+|++.+.+.+
T Consensus       157 ~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             ccCEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence            4578999999998          58888888776654

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=2.5e-21  Score=134.77  Aligned_cols=143  Identities=16%  Similarity=0.127  Sum_probs=98.4

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCC--------CCc------------ccccCcceEEEEEEEcCeEEEEEEcCCchhhH
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGE--------DTS------------VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR   74 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~--------~~~------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~   74 (185)
                      +.++|+++|++++|||||+++|...        ...            ...-|+......+.+++..+.++||||+..|.
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~   81 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI   81 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence            5689999999999999999998521        000            01235556667788999999999999999999


Q ss_pred             HHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEeecCCCCCCCC-HHH----HHHhcCccccc
Q 029920           75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS-LLILANKQDINGALT-PTE----IAKVLNLEAMD  148 (185)
Q Consensus        75 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~-~~~----~~~~~~~~~~~  148 (185)
                      ......+..+|++++|+|+.+.-..+. .+.+.....    .++| +++++||+|+.+... .++    +...+....+.
T Consensus        82 ~~~~~~~~~aD~avlVvda~~Gv~~qt-~~~~~~~~~----~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~  156 (204)
T d2c78a3          82 KNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP  156 (204)
T ss_dssp             HHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999998654433 233333322    2565 788899999865322 122    22222221121


Q ss_pred             CccceEEEeecccCC
Q 029920          149 KTRHWKIVGCSAYTG  163 (185)
Q Consensus       149 ~~~~~~~~~~Sa~~~  163 (185)
                       ....++++.|+..+
T Consensus       157 -~~~i~~i~~sa~~~  170 (204)
T d2c78a3         157 -GDEVPVIRGSALLA  170 (204)
T ss_dssp             -TTTSCEEECCHHHH
T ss_pred             -cccceeeeeechhh
Confidence             14567888888643

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.85  E-value=2.4e-20  Score=131.11  Aligned_cols=151  Identities=18%  Similarity=0.182  Sum_probs=101.8

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCC---c---------------------------------ccccCcceEEEEE
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDT---S---------------------------------VISPTLGFNIKTV   55 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~---~---------------------------------~~~~t~~~~~~~~   55 (185)
                      +++..+||+++|+.++|||||+++|+....   .                                 ....+.......+
T Consensus         5 ~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~   84 (222)
T d1zunb3           5 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF   84 (222)
T ss_dssp             TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred             ccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEE
Confidence            466789999999999999999999842100   0                                 0012333444556


Q ss_pred             EEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCC-CeEEEEeecCCCCCCCC
Q 029920           56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSG-ASLLILANKQDINGALT  134 (185)
Q Consensus        56 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~~~ivv~nK~D~~~~~~  134 (185)
                      ...+..+.++|+||+..|.......+..+|++++|+|+.+.-.-+ ..+.+.- +..   .+ ..+|++.||+|+.+..+
T Consensus        85 ~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Q-t~e~~~~-~~~---~gv~~iiv~vNK~D~~~~~~  159 (222)
T d1zunb3          85 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYI-ASL---LGIKHIVVAINKMDLNGFDE  159 (222)
T ss_dssp             ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHH-HHH---TTCCEEEEEEECTTTTTSCH
T ss_pred             eccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccc-hHHHHHH-HHH---cCCCEEEEEEEccccccccc
Confidence            667889999999999999999999999999999999998753322 2222222 222   24 45899999999976432


Q ss_pred             H--HHH----HHhcCcccccCccceEEEeecccCCCCHHH
Q 029920          135 P--TEI----AKVLNLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus       135 ~--~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      .  .+.    ...+....+. ...++++++||++|.|+.+
T Consensus       160 ~~~~~~~~~l~~~~~~~~~~-~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         160 RVFESIKADYLKFAEGIAFK-PTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             HHHHHHHHHHHHHHHTTTCC-CSEEEEEECCTTTCTTTSS
T ss_pred             eehhhhHHHHhhhhHhhccC-CCceEEEEEEcccCccCCc
Confidence            2  111    1111111111 2567899999999998843

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.8e-20  Score=127.81  Aligned_cols=160  Identities=21%  Similarity=0.169  Sum_probs=102.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEcCeEEEEEEcCCchhhHHH--H-------HhhhcC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQKYTLNIWDVGGQRTIRSY--W-------RNYFEQ   83 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--~-------~~~~~~   83 (185)
                      -.|+++|.+|+|||||+|+|++.+......    +..........+...+..+|++|.......  .       ......
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGD   85 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchhh
Confidence            468999999999999999999887643322    222334455567778888999985432221  1       111245


Q ss_pred             CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCC
Q 029920           84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTG  163 (185)
Q Consensus        84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (185)
                      +++++++.|..+.....  ......+ .   ....|.++++||.|.....  .++..... .........+++++||++|
T Consensus        86 ~~~~l~~~d~~~~~~~~--~~~~~~l-~---~~~~~~i~v~~k~d~~~~~--~~~~~~~~-~~~~~~~~~~~~~vSA~~g  156 (179)
T d1egaa1          86 VELVIFVVEGTRWTPDD--EMVLNKL-R---EGKAPVILAVNKVDNVQEK--ADLLPHLQ-FLASQMNFLDIVPISAETG  156 (179)
T ss_dssp             EEEEEEEEETTCCCHHH--HHHHHHH-H---SSSSCEEEEEESTTTCCCH--HHHHHHHH-HHHTTSCCSEEEECCTTTT
T ss_pred             cceeEEEEecCccchhH--HHHHHHh-h---hccCceeeeeeeeeccchh--hhhhhHhh-hhhhhcCCCCEEEEeCcCC
Confidence            68888888887633222  1222222 2   2357899999999976542  22211111 1112225568999999999


Q ss_pred             CCHHHHHHHHHHHHhhhcccCC
Q 029920          164 EGLLEGFDWLVQDIASRIYLLD  185 (185)
Q Consensus       164 ~~i~~l~~~l~~~~~~~~~~~~  185 (185)
                      .|+++|++.|.+.+.+.-+.||
T Consensus       157 ~gi~~L~~~i~~~lpe~~~~yp  178 (179)
T d1egaa1         157 LNVDTIAAIVRKHLPEATHHFP  178 (179)
T ss_dssp             TTHHHHHHHHHTTCCBCCCSSC
T ss_pred             CCHHHHHHHHHHhCCCCCCCCC
Confidence            9999999999998877655554

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=4.2e-20  Score=126.58  Aligned_cols=162  Identities=12%  Similarity=0.040  Sum_probs=91.6

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcc----eEEEEEEEcCeEEEEEEcCCc--------hhhHHHH-
Q 029920           11 KKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLG----FNIKTVTYQKYTLNIWDVGGQ--------RTIRSYW-   77 (185)
Q Consensus        11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~-   77 (185)
                      .+..+.++|+++|.+|+|||||+|+|.+.+........+    .........+......+.++.        ....... 
T Consensus        11 ~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (188)
T d1puia_          11 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALG   90 (188)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhh
Confidence            347778999999999999999999999987644332222    222223334444444444331        1111111 


Q ss_pred             --HhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEE
Q 029920           78 --RNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKI  155 (185)
Q Consensus        78 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (185)
                        .......+.++.+.+........ ...++.....    ...++++++||+|+.+..........+...........++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~  165 (188)
T d1puia_          91 EYLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV  165 (188)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEE
T ss_pred             hhhhhhhheeEEEEeecccccchhH-HHHHHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcE
Confidence              11123344555566665543222 2333333322    3688999999999876544443333333222222245789


Q ss_pred             EeecccCCCCHHHHHHHHHHHH
Q 029920          156 VGCSAYTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       156 ~~~Sa~~~~~i~~l~~~l~~~~  177 (185)
                      +++||++|.|+++|++.|.+.+
T Consensus       166 i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         166 ETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999987754

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=4.1e-19  Score=127.91  Aligned_cols=113  Identities=20%  Similarity=0.143  Sum_probs=86.8

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhC--CCCc-------------------ccccCcceEEEEEEEcCeEEEEEEcCCchh
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKING--EDTS-------------------VISPTLGFNIKTVTYQKYTLNIWDVGGQRT   72 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~--~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~   72 (185)
                      ++..+|+++|+.++|||||+.+|..  +...                   ...-|+......+.+++..++++||||+..
T Consensus         4 ~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~d   83 (276)
T d2bv3a2           4 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVD   83 (276)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSS
T ss_pred             hhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhh
Confidence            3445799999999999999999842  1110                   112245566677899999999999999999


Q ss_pred             hHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC
Q 029920           73 IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING  131 (185)
Q Consensus        73 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  131 (185)
                      |.......+..+|..|+|+|+.+.-.... ...|+...    ..+.|.++++||.|...
T Consensus        84 F~~e~~~~l~~~D~avlVvda~~Gv~~~T-~~~w~~a~----~~~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          84 FTIEVERSMRVLDGAIVVFDSSQGVEPQS-ETVWRQAE----KYKVPRIAFANKMDKTG  137 (276)
T ss_dssp             CSTTHHHHHHHCCEEEEEEETTTSSCHHH-HHHHHHHH----TTTCCEEEEEECTTSTT
T ss_pred             hHHHHHHHHHhhhheEEeccccCCcchhH-HHHHHHHH----HcCCCEEEEEecccccc
Confidence            99999999999999999999998654443 33334433    34899999999999865

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=4.4e-20  Score=128.84  Aligned_cols=120  Identities=23%  Similarity=0.346  Sum_probs=87.6

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhh----hcCCCEEEEE
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNY----FEQTDGLVWV   90 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~----~~~~d~~i~v   90 (185)
                      ..++|+++|++|||||||+|+|++..+.... +.......+..++..+.+||+||++.....+..+    ...++.++++
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~t-t~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~   80 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM   80 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCBC-CCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCeE-EecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceE
Confidence            4579999999999999999999988765332 2223344455677889999999988765554444    4556899999


Q ss_pred             EeCCC-cccHHHHHHHHHHHH---hccccCCCeEEEEeecCCCCCCCCH
Q 029920           91 VDSSD-LRRLDDCKMELDNLL---KEERLSGASLLILANKQDINGALTP  135 (185)
Q Consensus        91 ~d~~~-~~s~~~~~~~~~~~~---~~~~~~~~~~ivv~nK~D~~~~~~~  135 (185)
                      +|+.+ ..++.....++...+   ......++|+++++||+|+......
T Consensus        81 vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~  129 (209)
T d1nrjb_          81 VDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP  129 (209)
T ss_dssp             EETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred             EEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCcH
Confidence            99775 666777766665443   2334457999999999999776544

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.80  E-value=2e-18  Score=123.96  Aligned_cols=109  Identities=16%  Similarity=0.181  Sum_probs=84.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCC--CCc-------------------ccccCcceEEEEEEEcCeEEEEEEcCCchhhHH
Q 029920           17 MRILMVGLDNSGKTTIVLKINGE--DTS-------------------VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRS   75 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~--~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~   75 (185)
                      .+|+++|+.++|||||+.+|...  ...                   ....|+......+.+++..++++||||+..|..
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~   82 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG   82 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhh
Confidence            46999999999999999998421  110                   112355566778899999999999999999999


Q ss_pred             HHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC
Q 029920           76 YWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN  130 (185)
Q Consensus        76 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~  130 (185)
                      .....++.+|++++|+|+.+.-.... ...|....+    .++|.++++||+|..
T Consensus        83 e~~~al~~~D~avlvvda~~Gv~~~t-~~~~~~~~~----~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          83 EIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER----LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred             hhhhhhcccCceEEEeeccCCccchh-HHHHHhhhh----ccccccccccccccc
Confidence            99999999999999999998654433 233333333    379999999999974

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=6.4e-19  Score=125.09  Aligned_cols=150  Identities=15%  Similarity=0.198  Sum_probs=102.4

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHh---CC-------------------CC------------cccccCcceEEEEEEEc
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKIN---GE-------------------DT------------SVISPTLGFNIKTVTYQ   58 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~---~~-------------------~~------------~~~~~t~~~~~~~~~~~   58 (185)
                      .+..++|+++|+.++|||||+.+|+   +.                   .+            ....-|+......+.+.
T Consensus         3 ~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~   82 (239)
T d1f60a3           3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   82 (239)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred             CCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccC
Confidence            4556899999999999999999984   11                   11            01123555667778889


Q ss_pred             CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccH------HHHHHHHHHHHhccccCCC-eEEEEeecCCCCC
Q 029920           59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRL------DDCKMELDNLLKEERLSGA-SLLILANKQDING  131 (185)
Q Consensus        59 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~-~~ivv~nK~D~~~  131 (185)
                      +..+.++|+||+..|...+...+..+|++|+|+|+.....-      ....+.+.....    .++ ++||++||+|+.+
T Consensus        83 ~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~----~gv~~iiv~iNKmD~~~  158 (239)
T d1f60a3          83 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVK  158 (239)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGT
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH----cCCCeEEEEEECCCCCC
Confidence            99999999999999999999999999999999999863210      122332222222    245 5889999999876


Q ss_pred             CCCHH--H----HHHhcCcccccCccceEEEeecccCCCCHH
Q 029920          132 ALTPT--E----IAKVLNLEAMDKTRHWKIVGCSAYTGEGLL  167 (185)
Q Consensus       132 ~~~~~--~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (185)
                      ....+  +    +...+...... ...++++++|+..|.|+-
T Consensus       159 ~d~~~~~~~~~el~~~l~~~~~~-~~~i~~ipiSa~~G~ni~  199 (239)
T d1f60a3         159 WDESRFQEIVKETSNFIKKVGYN-PKTVPFVPISGWNGDNMI  199 (239)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCC-GGGCCEEECCTTTCBTTT
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCC-CCcEEEEEEEccCCCcce
Confidence            43321  1    22222111111 145778999999998863

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.78  E-value=2.3e-19  Score=126.57  Aligned_cols=150  Identities=17%  Similarity=0.218  Sum_probs=95.5

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCC---CC-------------------------------cccccCcceEEEEEEEcCe
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGE---DT-------------------------------SVISPTLGFNIKTVTYQKY   60 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~---~~-------------------------------~~~~~t~~~~~~~~~~~~~   60 (185)
                      +.++|+++|+.++|||||+.+|...   -.                               ...+.+.......+++++.
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~   81 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   81 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence            4689999999999999999988421   00                               0111233344445677889


Q ss_pred             EEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHH------HHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC
Q 029920           61 TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLD------DCKMELDNLLKEERLSGASLLILANKQDINGALT  134 (185)
Q Consensus        61 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~  134 (185)
                      .+.++||||+..|.......+..+|++++|+|+.+.....      ...+.+.-. ..  ....++|+++||+|+.....
T Consensus        82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~-~~--~~~~~iIv~iNK~D~~~~~~  158 (224)
T d1jnya3          82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILA-KT--MGLDQLIVAVNKMDLTEPPY  158 (224)
T ss_dssp             EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHH-HH--TTCTTCEEEEECGGGSSSTT
T ss_pred             eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHH-HH--hCCCceEEEEEcccCCCccc
Confidence            9999999999999999999999999999999999742111      122221111 11  12356899999999865322


Q ss_pred             HHH----HHHhc----CcccccCccceEEEeecccCCCCHHH
Q 029920          135 PTE----IAKVL----NLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus       135 ~~~----~~~~~----~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      ...    +...+    ..... .....+++++||..|.|+.+
T Consensus       159 ~~~~~~~v~~~i~~~~~~~~~-~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         159 DEKRYKEIVDQVSKFMRSYGF-NTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTC-CCTTCEEEECBTTTTBTTTB
T ss_pred             cHHHHHHHHHHHHhHHHhcCC-CcccCeEEEEEccCCCCccc
Confidence            211    11111    11111 12567899999999998843

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.76  E-value=5.1e-19  Score=126.15  Aligned_cols=155  Identities=19%  Similarity=0.201  Sum_probs=88.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHh---CCCCc-------------------------------ccccCcceEEEEEEEc
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKIN---GEDTS-------------------------------VISPTLGFNIKTVTYQ   58 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~---~~~~~-------------------------------~~~~t~~~~~~~~~~~   58 (185)
                      .++.++|+++|+.++|||||+.+|.   +.-..                               ....+.......+.+.
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~  100 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  100 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccc
Confidence            4567899999999999999999983   21100                               0011222222335567


Q ss_pred             CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCccc---HH---HHHHHHHHHHhccccCCC-eEEEEeecCCCCC
Q 029920           59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRR---LD---DCKMELDNLLKEERLSGA-SLLILANKQDING  131 (185)
Q Consensus        59 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-~~ivv~nK~D~~~  131 (185)
                      +..+.++|+||+..|..........+|++++|+|+.+...   +.   ...+.+.- +..   .++ ++++++||+|+..
T Consensus       101 ~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l-~~~---~~i~~iiv~iNKmD~~~  176 (245)
T d1r5ba3         101 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVL-ART---QGINHLVVVINKMDEPS  176 (245)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHH-HHH---TTCSSEEEEEECTTSTT
T ss_pred             cceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHH-HHH---cCCCeEEEEEEcCCCCc
Confidence            7899999999999999999988999999999999987321   10   12222222 222   144 4889999999875


Q ss_pred             CCC-H---HHHHHhcCcc-----cccCccceEEEeecccCCCCHHHHHH
Q 029920          132 ALT-P---TEIAKVLNLE-----AMDKTRHWKIVGCSAYTGEGLLEGFD  171 (185)
Q Consensus       132 ~~~-~---~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (185)
                      ... .   +++...+...     .......++++++||++|.|+.++++
T Consensus       177 ~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         177 VQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            432 1   2222222211     01112467999999999999987643

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=2.2e-16  Score=119.88  Aligned_cols=159  Identities=11%  Similarity=0.076  Sum_probs=91.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCCccc----ccCcceEEE--EEE-EcCeEEEEEEcCCchhhHH-----HHHhhh
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVI----SPTLGFNIK--TVT-YQKYTLNIWDVGGQRTIRS-----YWRNYF   81 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~----~~t~~~~~~--~~~-~~~~~~~~~D~~g~~~~~~-----~~~~~~   81 (185)
                      ..+++|+|+|.+|+|||||+|+|+|......    ....+.+..  .+. .+...+.+|||||......     .....+
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            4579999999999999999999998554211    111111111  122 2344688999999543322     223335


Q ss_pred             cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC---------CCHHH----HHHhcCccc-c
Q 029920           82 EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA---------LTPTE----IAKVLNLEA-M  147 (185)
Q Consensus        82 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~---------~~~~~----~~~~~~~~~-~  147 (185)
                      ..+|+++++.|..-.+.-   .+.+..+ .   ..++|+++|+||+|....         ...+.    +........ -
T Consensus       134 ~~~d~~l~~~~~~~~~~d---~~l~~~l-~---~~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~  206 (400)
T d1tq4a_         134 YEYDFFIIISATRFKKND---IDIAKAI-S---MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE  206 (400)
T ss_dssp             GGCSEEEEEESSCCCHHH---HHHHHHH-H---HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             hcceEEEEecCCCCCHHH---HHHHHHH-H---HcCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHH
Confidence            678999888875432211   1222222 2   237999999999995311         11111    111111000 0


Q ss_pred             cCccceEEEeecccC--CCCHHHHHHHHHHHHhh
Q 029920          148 DKTRHWKIVGCSAYT--GEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       148 ~~~~~~~~~~~Sa~~--~~~i~~l~~~l~~~~~~  179 (185)
                      ......++|.+|..+  ..++.++.+.+.+.+.+
T Consensus       207 ~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~  240 (400)
T d1tq4a_         207 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  240 (400)
T ss_dssp             TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             cCCCCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence            011345678888765  45899999998887654

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=3.4e-16  Score=115.79  Aligned_cols=120  Identities=18%  Similarity=0.185  Sum_probs=83.3

Q ss_pred             HHHHhhccCcee-EEEEEcCCCCChHHHHHHHhC--CCCc-----------------ccccCcceEEEEEEE--------
Q 029920            6 IIRKIKKKEKEM-RILMVGLDNSGKTTIVLKING--EDTS-----------------VISPTLGFNIKTVTY--------   57 (185)
Q Consensus         6 ~~~~~~~~~~~~-~i~v~G~~~~GKttli~~l~~--~~~~-----------------~~~~t~~~~~~~~~~--------   57 (185)
                      .++++......+ +|+|+|+.++|||||+.+|..  +...                 ...-|+......+.+        
T Consensus         6 ~~~~lm~~~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~   85 (341)
T d1n0ua2           6 QMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVK   85 (341)
T ss_dssp             HHHHHHHCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHH
T ss_pred             HHHHHhcCcccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCccccc
Confidence            455555555566 599999999999999999841  0000                 001122222222222        


Q ss_pred             --------cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCC
Q 029920           58 --------QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI  129 (185)
Q Consensus        58 --------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~  129 (185)
                              +++.++++||||+..|.......++.+|++++|+|+.+.-..+. ...+.....    .+.|+++++||+|.
T Consensus        86 ~~~~~~~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT-~~~~~~a~~----~~~p~i~viNKiDr  160 (341)
T d1n0ua2          86 EIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQT-ETVLRQALG----ERIKPVVVINKVDR  160 (341)
T ss_dssp             HCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHH-HHHHHHHHH----TTCEEEEEEECHHH
T ss_pred             chhccccccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhH-HHHHHHHHH----cCCCeEEEEECccc
Confidence                    34679999999999999999999999999999999998655443 222333333    37999999999995


Q ss_pred             C
Q 029920          130 N  130 (185)
Q Consensus       130 ~  130 (185)
                      .
T Consensus       161 ~  161 (341)
T d1n0ua2         161 A  161 (341)
T ss_dssp             H
T ss_pred             c
Confidence            3

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.62  E-value=1.3e-14  Score=103.90  Aligned_cols=117  Identities=18%  Similarity=0.179  Sum_probs=78.4

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcccc----cCcceEEEEEEEcCeEEEEEEcCCchh-------hHHHHHhh-
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVIS----PTLGFNIKTVTYQKYTLNIWDVGGQRT-------IRSYWRNY-   80 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~-   80 (185)
                      ....++|+++|.+|+|||||+|++++......+    .|..........++..+.++||||...       .......+ 
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~  108 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  108 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHH
Confidence            357899999999999999999999998764333    344455666778899999999999421       11112222 


Q ss_pred             -hcCCCEEEEEEeCCCcc---cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC
Q 029920           81 -FEQTDGLVWVVDSSDLR---RLDDCKMELDNLLKEERLSGASLLILANKQDING  131 (185)
Q Consensus        81 -~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  131 (185)
                       ....|+++||+++.+..   .-......+...+...  --.++++|+||+|...
T Consensus       109 ~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~--~~~~~ivv~t~~D~~~  161 (257)
T d1h65a_         109 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG--IWNKAIVALTHAQFSP  161 (257)
T ss_dssp             TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECCSCCC
T ss_pred             hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchh--hhhCEEEEEECcccCC
Confidence             24568999999887532   1222233333333221  1257999999999865

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.53  E-value=2.9e-15  Score=106.26  Aligned_cols=116  Identities=19%  Similarity=0.127  Sum_probs=67.1

Q ss_pred             eEEEEEEcCCchhhHHHHHh---h--hcCCCEEEEEEeCCCcccHHHHHH-HHHHHHhccccCCCeEEEEeecCCCCCCC
Q 029920           60 YTLNIWDVGGQRTIRSYWRN---Y--FEQTDGLVWVVDSSDLRRLDDCKM-ELDNLLKEERLSGASLLILANKQDINGAL  133 (185)
Q Consensus        60 ~~~~~~D~~g~~~~~~~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~  133 (185)
                      ..+.+.|+||+.........   .  ....+.+++++|+.....-..... .+...... ..-..|.++++||+|+....
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~-~~~~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLID-LRLGATTIPALNKVDLLSEE  173 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHH-HHHTSCEEEEECCGGGCCHH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHH-HHhCCCceeeeeccccccHH
Confidence            45899999998765432211   1  124678999999864322222211 11111111 11268999999999987653


Q ss_pred             CHHHHHHh----------cCcc--------------cccCccceEEEeecccCCCCHHHHHHHHHHH
Q 029920          134 TPTEIAKV----------LNLE--------------AMDKTRHWKIVGCSAYTGEGLLEGFDWLVQD  176 (185)
Q Consensus       134 ~~~~~~~~----------~~~~--------------~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  176 (185)
                      ........          ....              ........+++++||++|.|+++++..|.+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            32221110          0000              0001245689999999999999999988764

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=6.1e-15  Score=108.70  Aligned_cols=153  Identities=18%  Similarity=0.195  Sum_probs=85.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHh------CCCCcc--cccCcc---------------------eEEEEEE-------
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKIN------GEDTSV--ISPTLG---------------------FNIKTVT-------   56 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~------~~~~~~--~~~t~~---------------------~~~~~~~-------   56 (185)
                      ..+.++|+|.|+||+|||||+++|.      +.+...  ..|+..                     .......       
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg  130 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG  130 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhccccccccccccccccccc
Confidence            4568999999999999999999985      222210  111111                     1111110       


Q ss_pred             -------------EcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEE
Q 029920           57 -------------YQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLIL  123 (185)
Q Consensus        57 -------------~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv  123 (185)
                                   ..++.+.+++|.|...-.   ......+|.+++|.+....+..+.....+.+         .+=++|
T Consensus       131 ~~~~~~~~~~~~~~~g~d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e---------~aDi~V  198 (327)
T d2p67a1         131 ASQRARELMLLCEAAGYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKGLME---------VADLIV  198 (327)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHHHHH---------HCSEEE
T ss_pred             chhhhhHHHHHHHhcCCCeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhchhhhc---------cccEEE
Confidence                         013456777777643211   2245678999999876554433332222222         234788


Q ss_pred             eecCCCCCCCCHHHHHHhcCcc--cc---cCccceEEEeecccCCCCHHHHHHHHHHHH
Q 029920          124 ANKQDINGALTPTEIAKVLNLE--AM---DKTRHWKIVGCSAYTGEGLLEGFDWLVQDI  177 (185)
Q Consensus       124 ~nK~D~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (185)
                      +||+|+............+...  .+   ...-..|++.|||.+|.|++++++.|.+..
T Consensus       199 vNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         199 INKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             ECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             EEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence            8999986643222211111110  00   111235799999999999999999998755

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.37  E-value=2.8e-13  Score=98.85  Aligned_cols=84  Identities=19%  Similarity=0.243  Sum_probs=60.1

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCCCCc----ccccCcceEEEEEEEc-----------------CeEEEEEEcCCc
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS----VISPTLGFNIKTVTYQ-----------------KYTLNIWDVGGQ   70 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~----~~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g~   70 (185)
                      +....++|+++|.||||||||+|++++...+    ....|.......+...                 ..++.+.|.||.
T Consensus         6 ~~~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGL   85 (296)
T d1ni3a1           6 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   85 (296)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccc
Confidence            3457799999999999999999999975432    1223434333334332                 257899999982


Q ss_pred             -------hhhHHHHHhhhcCCCEEEEEEeCCC
Q 029920           71 -------RTIRSYWRNYFEQTDGLVWVVDSSD   95 (185)
Q Consensus        71 -------~~~~~~~~~~~~~~d~~i~v~d~~~   95 (185)
                             ..........++.+|+++.|+|+.+
T Consensus        86 v~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          86 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccccHHHHHHHhhccceeEEEEeccC
Confidence                   2234566677899999999999865

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.36  E-value=5.9e-14  Score=103.27  Aligned_cols=155  Identities=15%  Similarity=0.127  Sum_probs=90.5

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhCC------CCc-----ccc------------------cCcceEEEEE-------
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKINGE------DTS-----VIS------------------PTLGFNIKTV-------   55 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~~------~~~-----~~~------------------~t~~~~~~~~-------   55 (185)
                      ...+.++|+|.|+||+|||||+++|...      +..     ..+                  .......+..       
T Consensus        47 ~~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~g  126 (323)
T d2qm8a1          47 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLG  126 (323)
T ss_dssp             GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHH
T ss_pred             ccCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeecccccccccc
Confidence            4567899999999999999999998521      110     000                  0111111111       


Q ss_pred             -------------EEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEE
Q 029920           56 -------------TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLI  122 (185)
Q Consensus        56 -------------~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~iv  122 (185)
                                   +..++.+.++.|.|...-...   ....+|.+++|......+..+....-         .....=++
T Consensus       127 g~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k~g---------ilE~aDi~  194 (323)
T d2qm8a1         127 GVAAKTRETMLLCEAAGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIKKG---------IFELADMI  194 (323)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CCTT---------HHHHCSEE
T ss_pred             chhHHHHHHHHhhccCCCCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhhhh---------Hhhhhhee
Confidence                         113468888899885432222   34568999999988765443321111         11244589


Q ss_pred             EeecCCCCCCCCHHH-HH----HhcCccc-ccCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920          123 LANKQDINGALTPTE-IA----KVLNLEA-MDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA  178 (185)
Q Consensus       123 v~nK~D~~~~~~~~~-~~----~~~~~~~-~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (185)
                      |+||+|+........ ..    ..+.... .......+++.+||.+|.|+++++++|.+...
T Consensus       195 vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         195 AVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             EEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             eEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            999999876533221 11    1111111 11113457999999999999999999987653

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.31  E-value=3.1e-12  Score=94.13  Aligned_cols=79  Identities=23%  Similarity=0.318  Sum_probs=46.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc-------ccccCcceEEEEEE--------------------EcCeEEEEEEcCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS-------VISPTLGFNIKTVT--------------------YQKYTLNIWDVGG   69 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~-------~~~~t~~~~~~~~~--------------------~~~~~~~~~D~~g   69 (185)
                      ++|+++|.||||||||+|+|++....       ...|..|......+                    .....++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            47999999999999999999886542       11222233222111                    1225799999999


Q ss_pred             chh-------hHHHHHhhhcCCCEEEEEEeCCC
Q 029920           70 QRT-------IRSYWRNYFEQTDGLVWVVDSSD   95 (185)
Q Consensus        70 ~~~-------~~~~~~~~~~~~d~~i~v~d~~~   95 (185)
                      .-.       ........++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            432       12222334578999999999864

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.25  E-value=1.8e-11  Score=88.36  Aligned_cols=79  Identities=22%  Similarity=0.235  Sum_probs=52.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCcc---cccCcceEEEEEEEc-----------------CeEEEEEEcCCch----
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTSV---ISPTLGFNIKTVTYQ-----------------KYTLNIWDVGGQR----   71 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~~---~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g~~----   71 (185)
                      .++|+++|.||||||||++++++.....   ...|.......+.+.                 .-.+.+.|.||.-    
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            3799999999999999999998665421   122322222223322                 1368899999932    


Q ss_pred             ---hhHHHHHhhhcCCCEEEEEEeCC
Q 029920           72 ---TIRSYWRNYFEQTDGLVWVVDSS   94 (185)
Q Consensus        72 ---~~~~~~~~~~~~~d~~i~v~d~~   94 (185)
                         ......-.+++.||+++.|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence               22334566789999999999874

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=4.9e-10  Score=81.38  Aligned_cols=114  Identities=17%  Similarity=0.173  Sum_probs=70.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCCCCccc--ccCcc-e-EEEEE-----------------------------------
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGEDTSVI--SPTLG-F-NIKTV-----------------------------------   55 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~--~~t~~-~-~~~~~-----------------------------------   55 (185)
                      ..++|+|+|.-++|||||+|+|+|..+...  .++.. . .....                                   
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence            457899999999999999999999876222  12111 1 11100                                   


Q ss_pred             -------------EE---cCeEEEEEEcCCch-------------hhHHHHHhhhcCCCEE-EEEEeCCCcccHHHHHHH
Q 029920           56 -------------TY---QKYTLNIWDVGGQR-------------TIRSYWRNYFEQTDGL-VWVVDSSDLRRLDDCKME  105 (185)
Q Consensus        56 -------------~~---~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~~-i~v~d~~~~~s~~~~~~~  105 (185)
                                   ..   .-..+.++|+||..             ....+...|+..++.+ ++|.++...-+......+
T Consensus       105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~  184 (299)
T d2akab1         105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHH
Confidence                         00   11247899999932             1234566677777754 556666654433333333


Q ss_pred             HHHHHhccccCCCeEEEEeecCCCCCC
Q 029920          106 LDNLLKEERLSGASLLILANKQDINGA  132 (185)
Q Consensus       106 ~~~~~~~~~~~~~~~ivv~nK~D~~~~  132 (185)
                      ...+    .....++++|+||+|..+.
T Consensus       185 ~~~~----~~~~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         185 AKEV----DPQGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHH----CTTCSSEEEEEECGGGSCT
T ss_pred             HHHh----CcCCCceeeEEeccccccc
Confidence            3333    2235789999999998664

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.09  E-value=4e-10  Score=82.14  Aligned_cols=69  Identities=16%  Similarity=0.197  Sum_probs=41.9

Q ss_pred             eEEEEEEcCCchh-------------hHHHHHhhhcCCCEEEEEE-eCCCcccHHHHHHHHHHHHhccccCCCeEEEEee
Q 029920           60 YTLNIWDVGGQRT-------------IRSYWRNYFEQTDGLVWVV-DSSDLRRLDDCKMELDNLLKEERLSGASLLILAN  125 (185)
Q Consensus        60 ~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~n  125 (185)
                      ..+.++||||...             ...+...|+..++.+++++ ++.....-.........+    .....++++|+|
T Consensus       131 ~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~----~~~~~r~i~Vit  206 (306)
T d1jwyb_         131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV----DPEGKRTIGVIT  206 (306)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH----CSSCSSEEEEEE
T ss_pred             CCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHh----CcCCCeEEEEEe
Confidence            3578999999432             2356677888898766654 544322222222222332    223568999999


Q ss_pred             cCCCCCC
Q 029920          126 KQDINGA  132 (185)
Q Consensus       126 K~D~~~~  132 (185)
                      |+|....
T Consensus       207 k~D~~~~  213 (306)
T d1jwyb_         207 KLDLMDK  213 (306)
T ss_dssp             CTTSSCS
T ss_pred             ccccccc
Confidence            9998654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=99.00  E-value=1.7e-10  Score=82.92  Aligned_cols=58  Identities=21%  Similarity=0.369  Sum_probs=38.5

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEE-cCeEEEEEEcCCc
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTY-QKYTLNIWDVGGQ   70 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~   70 (185)
                      ....++|+|+|.||+|||||+|+|.+.+....+++.|.+.....+ .+..+.++||||.
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~~~~~~l~DTPGi  167 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGI  167 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETTTEEEEECCCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEECCCCeEEecCCCc
Confidence            456799999999999999999999999888888888876654222 2346999999994

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.62  E-value=1.8e-08  Score=72.13  Aligned_cols=92  Identities=14%  Similarity=0.109  Sum_probs=67.2

Q ss_pred             HHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceE
Q 029920           75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWK  154 (185)
Q Consensus        75 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (185)
                      ......++.+|++++|+|+.+|.+..+  ..+..+++     ++|.|+|+||+|+.+....+.+...+..      ...+
T Consensus         7 r~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~~-----~Kp~IlVlNK~DLv~~~~~~~w~~~f~~------~~~~   73 (273)
T d1puja_           7 REVTEKLKLIDIVYELVDARIPMSSRN--PMIEDILK-----NKPRIMLLNKADKADAAVTQQWKEHFEN------QGIR   73 (273)
T ss_dssp             HHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHCS-----SSCEEEEEECGGGSCHHHHHHHHHHHHT------TTCC
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHHc-----CCCeEEEEECccCCchHHHHHHHHHHHh------cCCc
Confidence            345567899999999999998765443  22344432     6899999999999876555555555532      3446


Q ss_pred             EEeecccCCCCHHHHHHHHHHHHhh
Q 029920          155 IVGCSAYTGEGLLEGFDWLVQDIAS  179 (185)
Q Consensus       155 ~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (185)
                      ++.+|+.++.+..++...+.+.+.+
T Consensus        74 ~i~isa~~~~~~~~~~~~~~~~l~~   98 (273)
T d1puja_          74 SLSINSVNGQGLNQIVPASKEILQE   98 (273)
T ss_dssp             EEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             cceeecccCCCccccchhhhhhhhh
Confidence            7899999999999888877776654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.49  E-value=4.9e-08  Score=67.31  Aligned_cols=56  Identities=20%  Similarity=0.177  Sum_probs=33.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCccc---ccCcceEEE------EEEEcCeEEEEEEcCCchhh
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSVI---SPTLGFNIK------TVTYQKYTLNIWDVGGQRTI   73 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~~---~~t~~~~~~------~~~~~~~~~~~~D~~g~~~~   73 (185)
                      -..+++|++|+|||||+|+|.+......   +...+-..+      .+...+ .-.++||||..++
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~-gg~iiDTPG~r~~  160 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDF-GGYVVDTPGFANL  160 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTT-SCEEESSCSSTTC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECC-CcEEEeCCccccc
Confidence            3678999999999999999987654322   221121111      223322 2478999997654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.45  E-value=1.8e-07  Score=64.40  Aligned_cols=85  Identities=20%  Similarity=0.144  Sum_probs=58.1

Q ss_pred             hcCCCEEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeec
Q 029920           81 FEQTDGLVWVVDSSDLR-RLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCS  159 (185)
Q Consensus        81 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (185)
                      ..+.|.+++|+.+.+|. +...+..++.....    .+++.++|+||+|+.++.....+.......   . ...+++.+|
T Consensus         8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~---~-~~~~v~~vS   79 (225)
T d1u0la2           8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIY---S-GLYPIVKTS   79 (225)
T ss_dssp             EESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHH---T-TTSCEEECC
T ss_pred             cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCHHHHHHHHHhhccc---c-cceeEEEec
Confidence            46789999999988764 44444444444433    389999999999997653333333222211   1 335789999


Q ss_pred             ccCCCCHHHHHHHH
Q 029920          160 AYTGEGLLEGFDWL  173 (185)
Q Consensus       160 a~~~~~i~~l~~~l  173 (185)
                      ++++.|++++.+.+
T Consensus        80 a~~~~g~~~L~~~l   93 (225)
T d1u0la2          80 AKTGMGIEELKEYL   93 (225)
T ss_dssp             TTTCTTHHHHHHHH
T ss_pred             cccchhHhhHHHHh
Confidence            99999999988765

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.43  E-value=1.1e-06  Score=58.07  Aligned_cols=23  Identities=43%  Similarity=0.614  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      +||+++|++|||||||++.+++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            48999999999999999998763

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.30  E-value=6.6e-08  Score=66.86  Aligned_cols=56  Identities=20%  Similarity=0.232  Sum_probs=31.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCcc---cccCcc------eEEEEEEEcCeEEEEEEcCCchhhH
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTSV---ISPTLG------FNIKTVTYQKYTLNIWDVGGQRTIR   74 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~~---~~~t~~------~~~~~~~~~~~~~~~~D~~g~~~~~   74 (185)
                      -..+++|++|+|||||+|+|.+.....   .+...+      .....+..++  -.++||||..++.
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~g--g~iiDTPG~r~~~  162 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSG--GLVADTPGFSSLE  162 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETT--EEEESSCSCSSCC
T ss_pred             ceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCC--CEEEECCcccccc
Confidence            356799999999999999998864321   221111      1111123343  2588999976543

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.27  E-value=9.8e-08  Score=65.41  Aligned_cols=25  Identities=36%  Similarity=0.535  Sum_probs=20.6

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHh
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~   37 (185)
                      +..+.-|+++|++|+||||.+-.|.
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH
Confidence            4556678999999999999977764

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.17  E-value=9.2e-07  Score=60.22  Aligned_cols=66  Identities=17%  Similarity=0.170  Sum_probs=37.4

Q ss_pred             CeEEEEEEcCCchhhH----HHHHhhh--------cCCCEEEEEEeCCCc-ccHHHHHHHHHHHHhccccCCCeEEEEee
Q 029920           59 KYTLNIWDVGGQRTIR----SYWRNYF--------EQTDGLVWVVDSSDL-RRLDDCKMELDNLLKEERLSGASLLILAN  125 (185)
Q Consensus        59 ~~~~~~~D~~g~~~~~----~~~~~~~--------~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~ivv~n  125 (185)
                      +..+.++||+|.....    .....+.        ...+-.++|+|++.. +........+..+        .+--+++|
T Consensus        88 ~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~--------~~~~lI~T  159 (207)
T d1okkd2          88 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV--------GLTGVIVT  159 (207)
T ss_dssp             TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH--------CCSEEEEE
T ss_pred             CCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc--------CCceEEEe
Confidence            4678999999943221    1111111        246889999999863 3333333222221        22356899


Q ss_pred             cCCCCCC
Q 029920          126 KQDINGA  132 (185)
Q Consensus       126 K~D~~~~  132 (185)
                      |.|....
T Consensus       160 KlDet~~  166 (207)
T d1okkd2         160 KLDGTAK  166 (207)
T ss_dssp             CTTSSCC
T ss_pred             ccCCCCC
Confidence            9997544

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.12  E-value=3e-06  Score=57.73  Aligned_cols=94  Identities=18%  Similarity=0.122  Sum_probs=48.4

Q ss_pred             cCeEEEEEEcCCchhhH------HHHHhh--hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCC
Q 029920           58 QKYTLNIWDVGGQRTIR------SYWRNY--FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI  129 (185)
Q Consensus        58 ~~~~~~~~D~~g~~~~~------~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~  129 (185)
                      .+..+.++||+|.....      ......  .-..+-+++|+|++....-.  .. ........   +. --+++||.|.
T Consensus        93 ~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~--~~-~~~~~~~~---~~-~~lI~TKlDe  165 (211)
T d1j8yf2          93 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAY--DL-ASKFNQAS---KI-GTIIITKMDG  165 (211)
T ss_dssp             TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH--HH-HHHHHHHC---TT-EEEEEECTTS
T ss_pred             cCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchH--HH-Hhhhhccc---Cc-ceEEEecccC
Confidence            34689999999942211      111111  12467889999988643221  11 12222221   22 3467999997


Q ss_pred             CCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920          130 NGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE  168 (185)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (185)
                      ...  .-.+......      .+.|+..++  +|+++++
T Consensus       166 t~~--~G~~l~~~~~------~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         166 TAK--GGGALSAVAA------TGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             CSC--HHHHHHHHHT------TTCCEEEEE--CSSSTTC
T ss_pred             CCc--ccHHHHHHHH------HCcCEEEEe--CCCCccc
Confidence            554  2222222221      445655555  4666654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.12  E-value=4.2e-07  Score=61.99  Aligned_cols=68  Identities=13%  Similarity=0.081  Sum_probs=38.2

Q ss_pred             cCeEEEEEEcCCchhhHH----HHHhh--hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC
Q 029920           58 QKYTLNIWDVGGQRTIRS----YWRNY--FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING  131 (185)
Q Consensus        58 ~~~~~~~~D~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~  131 (185)
                      ++..+.++||+|......    .+..+  ....+-+++|.|++....-...   ...+.+..    ..-=++++|.|...
T Consensus        91 ~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~---~~~f~~~~----~~~~~I~TKlDe~~  163 (207)
T d1ls1a2          91 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSV---ARAFDEKV----GVTGLVLTKLDGDA  163 (207)
T ss_dssp             HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHH---HHHHHHHT----CCCEEEEECGGGCS
T ss_pred             ccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHH---HHHHHhhC----CCCeeEEeecCccc
Confidence            346789999999332211    11111  2457899999999864322222   22222221    12347899999654


Q ss_pred             C
Q 029920          132 A  132 (185)
Q Consensus       132 ~  132 (185)
                      .
T Consensus       164 ~  164 (207)
T d1ls1a2         164 R  164 (207)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=1.1e-06  Score=59.96  Aligned_cols=23  Identities=43%  Similarity=0.624  Sum_probs=19.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHh
Q 029920           15 KEMRILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~   37 (185)
                      .+.-|+++|++|+||||.+-.|.
T Consensus         8 ~p~vi~lvGptGvGKTTTiAKLA   30 (211)
T d2qy9a2           8 APFVILMVGVNGVGKTTTIGKLA   30 (211)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            34567889999999999987774

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=2e-05  Score=54.16  Aligned_cols=23  Identities=35%  Similarity=0.471  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      +-++|-|..|||||||++++...
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhc
Confidence            44788899999999999998654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.06  E-value=3.8e-07  Score=62.96  Aligned_cols=87  Identities=10%  Similarity=0.016  Sum_probs=58.2

Q ss_pred             hcCCCEEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeec
Q 029920           81 FEQTDGLVWVVDSSDLR-RLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCS  159 (185)
Q Consensus        81 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (185)
                      ..+.|.+++|+++.+|. ++..+..++....    ..+++.++|+||+|+.++...++....+.. .. ...+.+++.+|
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~----~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~-~y-~~~g~~v~~~S   81 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYAE-DY-RNIGYDVYLTS   81 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHHH-HH-HHHTCCEEECC
T ss_pred             ccccCEEEEEEECCCCCCCHHHHHHHHHHHH----HcCCCEEEEEecccccccHHHHHHHHHHHH-HH-hhccccceeee
Confidence            46789999999998763 4455555544443    347999999999999775433332222211 01 11466899999


Q ss_pred             ccCCCCHHHHHHHH
Q 029920          160 AYTGEGLLEGFDWL  173 (185)
Q Consensus       160 a~~~~~i~~l~~~l  173 (185)
                      ++++.|++++.+.+
T Consensus        82 a~~~~gl~~L~~~l   95 (231)
T d1t9ha2          82 SKDQDSLADIIPHF   95 (231)
T ss_dssp             HHHHTTCTTTGGGG
T ss_pred             cCChhHHHHHHHhh
Confidence            99999998877654

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.96  E-value=2.4e-06  Score=56.10  Aligned_cols=27  Identities=33%  Similarity=0.534  Sum_probs=23.6

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ..+..+|++.|++||||||+.+.|...
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            456789999999999999999999654

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.92  E-value=1.9e-06  Score=57.05  Aligned_cols=25  Identities=24%  Similarity=0.376  Sum_probs=21.7

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      -.-+|+|.|++|||||||+++|...
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999999764

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.92  E-value=2.2e-06  Score=56.15  Aligned_cols=23  Identities=30%  Similarity=0.381  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhC
Q 029920           16 EMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      .++|++.|+|||||||+++.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999864

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.90  E-value=2.7e-06  Score=56.94  Aligned_cols=25  Identities=24%  Similarity=0.385  Sum_probs=22.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .+++|++.|+|||||||+++.|+..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5778999999999999999998654

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.87  E-value=4.1e-06  Score=56.20  Aligned_cols=27  Identities=26%  Similarity=0.428  Sum_probs=23.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      +.+.++|+++|+|||||||+...|+..
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence            456789999999999999999999764

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.87  E-value=4.2e-06  Score=56.17  Aligned_cols=26  Identities=31%  Similarity=0.312  Sum_probs=22.4

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ..++..|+|+|+|||||||++++|+.
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            45567789999999999999999965

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=4.3e-06  Score=54.57  Aligned_cols=22  Identities=23%  Similarity=0.301  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      +-++|+|++|||||||+++|..
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3589999999999999999974

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.82  E-value=5.4e-06  Score=55.45  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=21.5

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      +.++|+++|+|||||||++..|+.
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999999974

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.81  E-value=5.4e-06  Score=54.90  Aligned_cols=23  Identities=35%  Similarity=0.538  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ++|+|+|+|||||||+++.|+..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988543

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.73  E-value=8.5e-06  Score=54.10  Aligned_cols=23  Identities=35%  Similarity=0.530  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ++|+++|+|||||||+++.|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998754

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.73  E-value=8.6e-06  Score=54.01  Aligned_cols=23  Identities=35%  Similarity=0.625  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ++|+++|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999998643

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.72  E-value=8e-06  Score=52.35  Aligned_cols=21  Identities=33%  Similarity=0.453  Sum_probs=18.4

Q ss_pred             EEEEcCCCCChHHHHHHHhCC
Q 029920           19 ILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~~   39 (185)
                      |++.|+|||||||+++.|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            778999999999999998643

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=0.0002  Score=50.57  Aligned_cols=59  Identities=27%  Similarity=0.331  Sum_probs=41.2

Q ss_pred             cCcee-EEEEEcCCCCChHHHHHHHhCCCCc------ccccCcceEEEEEEE---cCeEEEEEEcCCch
Q 029920           13 KEKEM-RILMVGLDNSGKTTIVLKINGEDTS------VISPTLGFNIKTVTY---QKYTLNIWDVGGQR   71 (185)
Q Consensus        13 ~~~~~-~i~v~G~~~~GKttli~~l~~~~~~------~~~~t~~~~~~~~~~---~~~~~~~~D~~g~~   71 (185)
                      -+.++ -|+|+|+.++|||+|+|.|.+....      ....|.|+-......   .+..+.++||.|..
T Consensus        28 ~~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          28 ITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             CCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccc
Confidence            34444 6899999999999999999987642      123456654433322   45689999999953

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=9.8e-06  Score=53.61  Aligned_cols=22  Identities=36%  Similarity=0.448  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ++|+++|+|||||||.++.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998854

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.70  E-value=1e-05  Score=53.67  Aligned_cols=24  Identities=21%  Similarity=0.469  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .++|+++|+|||||||+++.|+..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999999753

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.67  E-value=1e-05  Score=52.71  Aligned_cols=21  Identities=19%  Similarity=0.422  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChHHHHHHHhCC
Q 029920           19 ILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~~   39 (185)
                      |++.|+|||||||+++.|...
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999754

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=1.3e-05  Score=53.72  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhC
Q 029920           16 EMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ++.|+|+|+|||||||.+..|+.
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998864

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.64  E-value=1.1e-05  Score=52.70  Aligned_cols=22  Identities=36%  Similarity=0.552  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ++|+++|++||||||+.+.|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999988853

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.58  E-value=1.7e-05  Score=51.76  Aligned_cols=20  Identities=40%  Similarity=0.471  Sum_probs=17.7

Q ss_pred             EEEEcCCCCChHHHHHHHhC
Q 029920           19 ILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~   38 (185)
                      +.|+|.+|||||||+++|..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            46999999999999998854

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=1.5e-05  Score=51.32  Aligned_cols=22  Identities=32%  Similarity=0.490  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .|+++|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999998754

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.55  E-value=2.6e-05  Score=51.08  Aligned_cols=26  Identities=27%  Similarity=0.413  Sum_probs=21.6

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ..+-+.|.+.|.+||||||+.+.|..
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34557889999999999999988863

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=2.4e-05  Score=54.32  Aligned_cols=24  Identities=33%  Similarity=0.277  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      +++|+|+.|||||||++.+.+-..
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCC
Confidence            689999999999999999988644

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.52  E-value=3e-05  Score=51.61  Aligned_cols=26  Identities=27%  Similarity=0.395  Sum_probs=22.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ...++-|+|-|++|||||||++.|..
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            55677899999999999999999863

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=2.4e-05  Score=53.92  Aligned_cols=23  Identities=30%  Similarity=0.537  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGED   40 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~   40 (185)
                      .++++|+.|||||||++.+.+-.
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47899999999999999997743

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.52  E-value=3.1e-05  Score=50.97  Aligned_cols=25  Identities=20%  Similarity=0.292  Sum_probs=21.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ..+.=|+++|.|||||||++..+..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4556789999999999999999864

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.51  E-value=2.7e-05  Score=52.49  Aligned_cols=22  Identities=45%  Similarity=0.560  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      .-|+++|.|||||||+.++|+.
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999999874

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.51  E-value=2.5e-05  Score=53.77  Aligned_cols=24  Identities=29%  Similarity=0.372  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.+-..
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~~   56 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLDK   56 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCcchhhHhccCCCC
Confidence            579999999999999999988643

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.51  E-value=3.1e-05  Score=52.29  Aligned_cols=25  Identities=24%  Similarity=0.239  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCc
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTS   42 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~   42 (185)
                      .++++|+.|||||||++.+++...+
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~~p   53 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYLKP   53 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHhccccc
Confidence            4789999999999999999986443

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.51  E-value=2.1e-05  Score=55.17  Aligned_cols=26  Identities=35%  Similarity=0.376  Sum_probs=21.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      +.+.-|++.|+||||||||++++++.
T Consensus        30 ~~P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          30 ESPTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            33445899999999999999998653

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.49  E-value=2.9e-05  Score=54.35  Aligned_cols=24  Identities=33%  Similarity=0.361  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.+-..
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             EEEEECCCCChHHHHHHHHhcccC
Confidence            689999999999999999987543

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.49  E-value=4.2e-05  Score=53.10  Aligned_cols=24  Identities=25%  Similarity=0.243  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.+-..
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl~~   53 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERFYQ   53 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhC
Confidence            689999999999999999987543

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.46  E-value=2.7e-05  Score=50.59  Aligned_cols=21  Identities=29%  Similarity=0.548  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      +|+++|++||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998854

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.46  E-value=3.9e-05  Score=51.37  Aligned_cols=26  Identities=23%  Similarity=0.299  Sum_probs=21.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .+...|+++|+|||||||++..|+..
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            44556899999999999999999653

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=3.4e-05  Score=53.86  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.+-..
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcccC
Confidence            689999999999999999987644

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.45  E-value=3.5e-05  Score=50.33  Aligned_cols=21  Identities=33%  Similarity=0.477  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChHHHHHHHhCC
Q 029920           19 ILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~~   39 (185)
                      |++.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            778899999999999999765

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=3.3e-05  Score=50.25  Aligned_cols=21  Identities=19%  Similarity=0.480  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      -++++|++||||||+.+.|..
T Consensus         8 iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            366799999999999999865

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.44  E-value=3.7e-05  Score=54.60  Aligned_cols=24  Identities=33%  Similarity=0.497  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++|+|+.|||||||++.+.|-..
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhCCCc
Confidence            589999999999999999987544

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.43  E-value=3.6e-05  Score=53.19  Aligned_cols=24  Identities=21%  Similarity=0.325  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|-..
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~~   49 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC
Confidence            457899999999999999988543

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.42  E-value=3.8e-05  Score=53.11  Aligned_cols=24  Identities=29%  Similarity=0.470  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.+-..
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~~   57 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLEE   57 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC
Confidence            479999999999999999988643

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.41  E-value=6.5e-05  Score=51.54  Aligned_cols=32  Identities=25%  Similarity=0.347  Sum_probs=24.6

Q ss_pred             HHHhhccCceeEEEEEcCCCCChHHHHHHHhC
Q 029920            7 IRKIKKKEKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus         7 ~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ++.+-...+...+++.|++|+||||+++.+..
T Consensus        36 l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          36 LKHYVKTGSMPHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             HHHHHHHTCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             HHHHHHcCCCCeEEEECCCCCcHHHHHHHHHH
Confidence            34444445556799999999999999998865

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=3.9e-05  Score=50.34  Aligned_cols=20  Identities=30%  Similarity=0.561  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 029920           18 RILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~   37 (185)
                      .|.+.|++|+|||||+..+.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~   22 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKAS   22 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            48899999999999998875

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=4.4e-05  Score=52.82  Aligned_cols=23  Identities=22%  Similarity=0.316  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGED   40 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~   40 (185)
                      -++++|+.|||||||++.+.|-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            57999999999999999998864

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.38  E-value=5.2e-05  Score=52.24  Aligned_cols=27  Identities=33%  Similarity=0.358  Sum_probs=22.2

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ......+++.||||+||||+++.+...
T Consensus        32 ~~~~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          32 GEVLDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             TCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHhc
Confidence            334557999999999999999998753

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.38  E-value=4.5e-05  Score=52.78  Aligned_cols=24  Identities=29%  Similarity=0.480  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.+-..
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~~   54 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLEE   54 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            579999999999999999988644

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.38  E-value=4.2e-05  Score=50.31  Aligned_cols=20  Identities=20%  Similarity=0.232  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 029920           18 RILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~   37 (185)
                      -|+|.|++||||||+++.|.
T Consensus         3 iI~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            37888999999999999874

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=7.2e-05  Score=52.62  Aligned_cols=27  Identities=26%  Similarity=0.352  Sum_probs=22.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      +...-+++++|+||+|||++++.|...
T Consensus        36 r~~k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          36 RRRKNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             SSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCccCCcEEECCCCCcHHHHHHHHHHH
Confidence            445568999999999999999888643

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.36  E-value=4.7e-05  Score=50.63  Aligned_cols=21  Identities=33%  Similarity=0.593  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChHHHHHHHhCC
Q 029920           19 ILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~~   39 (185)
                      |+|+||+|||||||++.|+..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998654

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.35  E-value=4.9e-05  Score=49.70  Aligned_cols=20  Identities=35%  Similarity=0.498  Sum_probs=17.8

Q ss_pred             EEEEcCCCCChHHHHHHHhC
Q 029920           19 ILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~   38 (185)
                      |+++|++||||||+.+.|..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999853

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.35  E-value=5.2e-05  Score=52.58  Aligned_cols=24  Identities=29%  Similarity=0.450  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      -++++|+.|||||||++.+.|-..
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            478999999999999999998654

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.34  E-value=3e-05  Score=53.29  Aligned_cols=24  Identities=25%  Similarity=0.373  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      -++++|+.|||||||++.+.|-..
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~~   51 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFHV   51 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Confidence            479999999999999999998644

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.34  E-value=4.9e-05  Score=52.46  Aligned_cols=26  Identities=35%  Similarity=0.391  Sum_probs=22.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .....+++.||||+||||+++.+++.
T Consensus        33 ~~~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          33 EPLEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             SCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            34567999999999999999998753

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.34  E-value=5.3e-05  Score=49.36  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=18.0

Q ss_pred             EEEEcCCCCChHHHHHHHhCC
Q 029920           19 ILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~~   39 (185)
                      |++.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            566799999999999998664

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.33  E-value=5.3e-05  Score=50.64  Aligned_cols=23  Identities=39%  Similarity=0.335  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .-|.++|+|||||||++..|+..
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            44889999999999999999653

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.33  E-value=5.6e-05  Score=50.02  Aligned_cols=21  Identities=24%  Similarity=0.449  Sum_probs=18.7

Q ss_pred             EEEEcCCCCChHHHHHHHhCC
Q 029920           19 ILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~~   39 (185)
                      |+++||+|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678999999999999998654

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.31  E-value=3.9e-05  Score=53.66  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      +++++|+.|||||||++.+.+-..
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHHhcCC
Confidence            789999999999999999877544

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.30  E-value=7.4e-05  Score=51.68  Aligned_cols=25  Identities=24%  Similarity=0.235  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCc
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTS   42 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~   42 (185)
                      -++++|+.|||||||++.+.|-..+
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~~p   54 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLIKP   54 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4789999999999999999987543

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=6.9e-05  Score=49.53  Aligned_cols=22  Identities=14%  Similarity=0.351  Sum_probs=19.5

Q ss_pred             EEEEcCCCCChHHHHHHHhCCC
Q 029920           19 ILMVGLDNSGKTTIVLKINGED   40 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~~~   40 (185)
                      |+++||+|+||+||+++|....
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            8899999999999999987543

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.28  E-value=8e-05  Score=50.63  Aligned_cols=24  Identities=33%  Similarity=0.445  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      +.+.|+|-|||||||||....|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999864

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=8.1e-05  Score=50.39  Aligned_cols=23  Identities=30%  Similarity=0.351  Sum_probs=20.3

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHh
Q 029920           15 KEMRILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~   37 (185)
                      .++-|+|-|++||||||+.+.|.
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~   23 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIV   23 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            36789999999999999999874

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=4.4e-05  Score=52.68  Aligned_cols=22  Identities=27%  Similarity=0.598  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      -++++|+.|||||||++.+.|-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999999985

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.27  E-value=5.6e-05  Score=50.51  Aligned_cols=29  Identities=24%  Similarity=0.274  Sum_probs=25.1

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           11 KKKEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .+..+++-|+|-|..||||||+++.|...
T Consensus         4 ~~~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           4 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            45677889999999999999999998754

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.24  E-value=7.9e-05  Score=52.17  Aligned_cols=24  Identities=33%  Similarity=0.380  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.|-..
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~~   53 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLEK   53 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHHcCcc
Confidence            579999999999999999987643

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.24  E-value=7.9e-05  Score=49.72  Aligned_cols=20  Identities=25%  Similarity=0.521  Sum_probs=18.2

Q ss_pred             EEEEcCCCCChHHHHHHHhC
Q 029920           19 ILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~   38 (185)
                      |+|+||+|||||||+++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999854

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=0.00013  Score=49.97  Aligned_cols=35  Identities=26%  Similarity=0.461  Sum_probs=26.2

Q ss_pred             HHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920            5 SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus         5 ~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ..++++....+...+++.|++|+||||+++.++..
T Consensus        22 ~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          22 TVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             HHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHH
Confidence            34445544555566999999999999999998753

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.22  E-value=0.00014  Score=49.16  Aligned_cols=32  Identities=25%  Similarity=0.502  Sum_probs=26.4

Q ss_pred             HHHhhccCceeEEEEEcCCCCChHHHHHHHhC
Q 029920            7 IRKIKKKEKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus         7 ~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      .+......+..-|-+.|.||||||||.+.|..
T Consensus        15 ~r~~~~~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          15 ERTELRNQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             HHHHHHTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHhCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            44555577788899999999999999998863

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.22  E-value=8.7e-05  Score=51.88  Aligned_cols=24  Identities=33%  Similarity=0.479  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      -++++|+.|||||||++.+.|-..
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHHCCCc
Confidence            368999999999999999988644

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=4.8e-05  Score=50.54  Aligned_cols=23  Identities=26%  Similarity=0.553  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhC
Q 029920           16 EMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ...|.+.|.|||||||+.+.|..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45677899999999999999864

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.20  E-value=0.00013  Score=50.77  Aligned_cols=25  Identities=36%  Similarity=0.498  Sum_probs=21.5

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      +...|++.|+||||||++++.+++.
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhc
Confidence            4456999999999999999999753

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=0.00015  Score=49.49  Aligned_cols=33  Identities=24%  Similarity=0.343  Sum_probs=24.8

Q ss_pred             HHHHhhccCceeEEEEEcCCCCChHHHHHHHhC
Q 029920            6 IIRKIKKKEKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus         6 ~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      .+..+........+++.|++|+||||+++.+..
T Consensus        26 ~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          26 RLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             HHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCeEEEECCCCCCchhhHHHHHH
Confidence            344444455556799999999999999988764

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.19  E-value=0.00012  Score=48.67  Aligned_cols=28  Identities=21%  Similarity=0.204  Sum_probs=23.4

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCCCC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      ++++-|+|.|.+||||||+++.|....+
T Consensus         1 k~p~IIgitG~~gSGKstva~~l~~~g~   28 (191)
T d1uf9a_           1 KHPIIIGITGNIGSGKSTVAALLRSWGY   28 (191)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHCCC
Confidence            3678899999999999999998865433

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.17  E-value=4.4e-05  Score=52.84  Aligned_cols=24  Identities=38%  Similarity=0.517  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .++++|+.|||||||++.+.+-..
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~~   56 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLDV   56 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHHcCcC
Confidence            589999999999999999998644

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.16  E-value=0.00016  Score=49.31  Aligned_cols=34  Identities=26%  Similarity=0.440  Sum_probs=25.2

Q ss_pred             HHHHhhccCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920            6 IIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus         6 ~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .++++-.......+++.|++|+||||++..++..
T Consensus        25 ~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          25 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             HHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHH
Confidence            3444443444556999999999999999998753

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.0002  Score=47.82  Aligned_cols=26  Identities=23%  Similarity=0.360  Sum_probs=22.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ++..-+++++|+||+|||++++.|..
T Consensus        40 r~~k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          40 RRTKNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SSSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccCCCCeEEEecCCcccHHHHHHHHH
Confidence            45556899999999999999988864

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.13  E-value=0.00012  Score=48.30  Aligned_cols=20  Identities=30%  Similarity=0.730  Sum_probs=16.9

Q ss_pred             EE-EEEcCCCCChHHHHHHHh
Q 029920           18 RI-LMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        18 ~i-~v~G~~~~GKttli~~l~   37 (185)
                      || +|.|.+||||||+++.|.
T Consensus         2 kiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            44 467999999999999885

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.00012  Score=49.47  Aligned_cols=21  Identities=10%  Similarity=0.290  Sum_probs=18.7

Q ss_pred             EEEEcCCCCChHHHHHHHhCC
Q 029920           19 ILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~~   39 (185)
                      |+++||+|||||||++.|...
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678999999999999998654

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.03  E-value=0.00026  Score=51.13  Aligned_cols=24  Identities=29%  Similarity=0.275  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGED   40 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~   40 (185)
                      .+|+|.|++||||||++++|.+.-
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            458999999999999999998653

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.01  E-value=0.00016  Score=51.92  Aligned_cols=24  Identities=33%  Similarity=0.458  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      +-.++++||||||||.|++++...
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhhc
Confidence            346899999999999999998753

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.01  E-value=0.00022  Score=49.36  Aligned_cols=24  Identities=25%  Similarity=0.213  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ...+++.||||+||||+++.++..
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            346999999999999999999864

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.97  E-value=0.00025  Score=49.32  Aligned_cols=25  Identities=24%  Similarity=0.290  Sum_probs=21.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ...-.+++.|+||+|||++++.+..
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHH
Confidence            4456799999999999999998864

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.00032  Score=50.25  Aligned_cols=26  Identities=19%  Similarity=0.172  Sum_probs=22.3

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHh
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~   37 (185)
                      ..+.++-|+|.|++||||||+.+.|.
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            35678999999999999999988874

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.00024  Score=48.08  Aligned_cols=23  Identities=22%  Similarity=0.250  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      +-|+|.|||||||+|+...|...
T Consensus         4 piI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            35778899999999999998653

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.85  E-value=0.00039  Score=48.56  Aligned_cols=21  Identities=24%  Similarity=0.090  Sum_probs=17.2

Q ss_pred             EEEEcCCCCChHHHHHHHhCC
Q 029920           19 ILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~~   39 (185)
                      +.+.|+||+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            345699999999999998654

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.80  E-value=0.00039  Score=48.22  Aligned_cols=24  Identities=33%  Similarity=0.538  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      +-.|++.|+||||||++++++.+.
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEecCCCCChhHHHHHHHHH
Confidence            345999999999999999999853

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.0004  Score=48.48  Aligned_cols=24  Identities=42%  Similarity=0.594  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      +-.+++.||||||||+++++++..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHH
Confidence            345999999999999999999753

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.75  E-value=0.00046  Score=48.18  Aligned_cols=25  Identities=32%  Similarity=0.410  Sum_probs=21.7

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .+..+++.||||||||+++++++..
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceeEEecCCCCCchHHHHHHHHH
Confidence            3456999999999999999999864

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.75  E-value=0.00037  Score=48.49  Aligned_cols=22  Identities=27%  Similarity=0.348  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      -.|+|.|++|+|||||++.++.
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Confidence            4578999999999999998753

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.75  E-value=0.00038  Score=51.46  Aligned_cols=26  Identities=23%  Similarity=0.360  Sum_probs=20.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ++..-+++++|+||+|||++++.|..
T Consensus        40 r~~k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          40 RRTKNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CSSCCCCEEEECTTSCHHHHHHHHHH
T ss_pred             cCCCCCCeEECCCCCCHHHHHHHHHH
Confidence            45556679999999999999976653

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.00034  Score=48.27  Aligned_cols=24  Identities=21%  Similarity=0.337  Sum_probs=20.4

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ....+++.|++|+||||++..++.
T Consensus        32 ~~~~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          32 DLPHLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CCCCEEEECSTTSSHHHHHHTHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            344699999999999999988764

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.68  E-value=0.0007  Score=47.86  Aligned_cols=24  Identities=25%  Similarity=0.397  Sum_probs=21.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHH
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKI   36 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l   36 (185)
                      .+.++-|+|-|++|||||||...+
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l   47 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQI   47 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHH
Confidence            556789999999999999998766

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.53  E-value=0.00075  Score=45.10  Aligned_cols=21  Identities=43%  Similarity=0.711  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999988753

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.50  E-value=0.00057  Score=47.90  Aligned_cols=25  Identities=28%  Similarity=0.375  Sum_probs=21.7

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ..-.|++.|++|+|||+|++++++.
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHH
Confidence            3456999999999999999999765

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.41  E-value=0.00072  Score=50.86  Aligned_cols=22  Identities=36%  Similarity=0.549  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      -+|+++||+|||||-|+++|..
T Consensus        50 sNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999854

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.37  E-value=0.00099  Score=48.78  Aligned_cols=25  Identities=32%  Similarity=0.302  Sum_probs=21.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhC
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ...-.+++.||||+|||+++.++++
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHH
Confidence            3345799999999999999999864

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.36  E-value=0.0095  Score=38.00  Aligned_cols=53  Identities=23%  Similarity=0.238  Sum_probs=32.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHhCC---CCcccccCcceEEEEEEEcCeEEEEEEc
Q 029920           14 EKEMRILMVGLDNSGKTTIVLKINGE---DTSVISPTLGFNIKTVTYQKYTLNIWDV   67 (185)
Q Consensus        14 ~~~~~i~v~G~~~~GKttli~~l~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~D~   67 (185)
                      ++..-|++-|+-|+|||||++.++..   .....+||-.... .....+..+.=+|.
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l~~-~Y~~~~~~i~H~Dl   86 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVE-EYNIAGKMIYHFDL   86 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEE-EEEETTEEEEEEEC
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhcccccccCCCceEEEE-eeccCCceEEEEEE
Confidence            34556889999999999999987543   2234556655422 22333444443443

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.28  E-value=0.0011  Score=44.44  Aligned_cols=20  Identities=35%  Similarity=0.478  Sum_probs=17.6

Q ss_pred             EEEEcCCCCChHHHHHHHhC
Q 029920           19 ILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~   38 (185)
                      |++-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999988753

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.27  E-value=0.00071  Score=47.84  Aligned_cols=22  Identities=18%  Similarity=0.291  Sum_probs=16.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHh
Q 029920           16 EMRILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~   37 (185)
                      .+-|+|.|++||||||+.++|.
T Consensus         4 ~pIIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           4 HPIISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             SCEEEEESCC---CCTHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHH
Confidence            3459999999999999998873

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.26  E-value=0.0019  Score=43.25  Aligned_cols=25  Identities=28%  Similarity=0.170  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      +-|+|.|..||||||+++.|....+
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~G~   27 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDLGV   27 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCCC
Confidence            5689999999999999998865433

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.23  E-value=0.0014  Score=43.95  Aligned_cols=25  Identities=20%  Similarity=0.191  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      +-|+|.|.+||||||+.+.|....+
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G~   28 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLGI   28 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCCC
Confidence            4688999999999999998865433

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.0015  Score=43.57  Aligned_cols=22  Identities=27%  Similarity=0.203  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      -+.|.|+||+|||+|+..++.+
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4688899999999999887643

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.10  E-value=0.00086  Score=48.41  Aligned_cols=21  Identities=29%  Similarity=0.458  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      .|++.|+||+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            689999999999999998853

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0011  Score=45.28  Aligned_cols=22  Identities=27%  Similarity=0.285  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .|+|-|+.||||||+++.|...
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988764

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0017  Score=43.67  Aligned_cols=20  Identities=35%  Similarity=0.526  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 029920           18 RILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~   37 (185)
                      =|++-|..||||||+++.|.
T Consensus         5 lI~ieG~dGsGKsT~~~~L~   24 (209)
T d1nn5a_           5 LIVLEGVDRAGKSTQSRKLV   24 (209)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            37888999999999887764

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.04  E-value=0.0019  Score=43.87  Aligned_cols=22  Identities=14%  Similarity=0.148  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q 029920           18 RILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~   39 (185)
                      -+.|.|+||+|||+|+..+...
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4688899999999999887644

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.0026  Score=43.53  Aligned_cols=32  Identities=19%  Similarity=0.174  Sum_probs=22.2

Q ss_pred             HHHHhhccCceeE-EEEEcCCCCChHHHHHHHh
Q 029920            6 IIRKIKKKEKEMR-ILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus         6 ~~~~~~~~~~~~~-i~v~G~~~~GKttli~~l~   37 (185)
                      .+.+.-...+..+ +++.|++|+||||+++.+.
T Consensus        23 ~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~   55 (239)
T d1njfa_          23 ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA   55 (239)
T ss_dssp             HHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHH
T ss_pred             HHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHH
Confidence            3444333333343 7889999999999998874

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.95  E-value=0.0017  Score=46.54  Aligned_cols=21  Identities=33%  Similarity=0.585  Sum_probs=17.5

Q ss_pred             EEEEcCCCCChHHHHHHHhCC
Q 029920           19 ILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~~   39 (185)
                      +++.|+||||||.|++.+.+.
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            344699999999999998753

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.0022  Score=43.07  Aligned_cols=21  Identities=14%  Similarity=0.412  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      .+++.|++|+||||++..+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            499999999999999987643

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.87  E-value=0.0023  Score=43.79  Aligned_cols=21  Identities=24%  Similarity=0.167  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      -+.|.|+||+|||+|.-.++.
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~   58 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAV   58 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            468889999999999887754

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.79  E-value=0.0055  Score=42.90  Aligned_cols=25  Identities=20%  Similarity=0.321  Sum_probs=20.5

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ...-|+|.|..|+|||||+..+.+.
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3456889999999999999887543

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.73  E-value=0.002  Score=45.58  Aligned_cols=18  Identities=39%  Similarity=0.588  Sum_probs=16.0

Q ss_pred             EEEEcCCCCChHHHHHHH
Q 029920           19 ILMVGLDNSGKTTIVLKI   36 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l   36 (185)
                      .+++|+.||||||+++++
T Consensus        27 nvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEEECCTTTCSTHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHH
Confidence            367899999999999887

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.69  E-value=0.0029  Score=43.06  Aligned_cols=21  Identities=33%  Similarity=0.445  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      -+.|.|+||+|||+|+..++.
T Consensus        28 l~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            468889999999999887743

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0038  Score=42.53  Aligned_cols=22  Identities=27%  Similarity=0.290  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      --|+|=|.-||||||+++.|..
T Consensus         3 k~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            3588999999999999999875

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.63  E-value=0.0039  Score=40.70  Aligned_cols=26  Identities=19%  Similarity=0.387  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCCc
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDTS   42 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~~   42 (185)
                      .-|++.|++|+||||++-.|......
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G~~   41 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKNHL   41 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTTCE
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcCCc
Confidence            45899999999999999998776553

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.62  E-value=0.0052  Score=40.84  Aligned_cols=27  Identities=19%  Similarity=0.224  Sum_probs=21.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ..+.-.+++.|++++|||+++.++..-
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHH
Confidence            445567999999999999999887543

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.0042  Score=44.41  Aligned_cols=25  Identities=24%  Similarity=0.482  Sum_probs=20.7

Q ss_pred             Ccee-EEEEEcCCCCChHHHHHHHhC
Q 029920           14 EKEM-RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        14 ~~~~-~i~v~G~~~~GKttli~~l~~   38 (185)
                      .++. .++++||+|+|||.|+..|..
T Consensus        49 ~~p~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          49 HKPVGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             TSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchhHHHHHHHHh
Confidence            3344 589999999999999999864

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.60  E-value=0.00048  Score=45.58  Aligned_cols=17  Identities=24%  Similarity=0.405  Sum_probs=15.4

Q ss_pred             EEEcCCCCChHHHHHHH
Q 029920           20 LMVGLDNSGKTTIVLKI   36 (185)
Q Consensus        20 ~v~G~~~~GKttli~~l   36 (185)
                      +++|+.||||||++.++
T Consensus        28 vi~G~NGsGKStil~Ai   44 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAF   44 (222)
T ss_dssp             HHHSCCSHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHH
Confidence            56799999999999997

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.57  E-value=0.0038  Score=40.71  Aligned_cols=25  Identities=20%  Similarity=0.396  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhCCCC
Q 029920           17 MRILMVGLDNSGKTTIVLKINGEDT   41 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~~~~   41 (185)
                      .-|++.|++|+||||++-.|.....
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4589999999999999988876544

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.50  E-value=0.0047  Score=44.48  Aligned_cols=25  Identities=24%  Similarity=0.274  Sum_probs=22.2

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ..++|.|=|.-||||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            4579999999999999999999764

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.42  E-value=0.0042  Score=42.11  Aligned_cols=21  Identities=29%  Similarity=0.215  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      -+.|.|+||+|||+|+..++.
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            367889999999999888754

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.41  E-value=0.0042  Score=44.75  Aligned_cols=25  Identities=28%  Similarity=0.256  Sum_probs=22.2

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      +.++|+|=|.-|+||||+++.|...
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999998754

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.39  E-value=0.0045  Score=41.66  Aligned_cols=21  Identities=29%  Similarity=0.463  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChHHHHHHHhCC
Q 029920           19 ILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~~   39 (185)
                      +.+.|++|+|||.|+++++..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999998764

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.35  E-value=0.0047  Score=41.56  Aligned_cols=20  Identities=45%  Similarity=0.564  Sum_probs=17.8

Q ss_pred             EEEEcCCCCChHHHHHHHhC
Q 029920           19 ILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~   38 (185)
                      |++-|.-||||||+++.|..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999988753

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.0049  Score=42.01  Aligned_cols=21  Identities=19%  Similarity=0.077  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      -+.|.|+||+|||+|...++.
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999988864

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.25  E-value=0.0052  Score=44.84  Aligned_cols=24  Identities=29%  Similarity=0.480  Sum_probs=20.6

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHhC
Q 029920           15 KEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ..-+++++||+|||||-|.++|..
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHh
Confidence            445699999999999999999864

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.24  E-value=0.0052  Score=39.77  Aligned_cols=27  Identities=19%  Similarity=0.321  Sum_probs=21.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCCCCc
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGEDTS   42 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~~~~   42 (185)
                      ..-|++.|++|+||||+.-.|......
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~g~~   41 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKRGHR   41 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHTTCE
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcCCe
Confidence            346899999999999999887766443

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.19  E-value=0.0052  Score=45.46  Aligned_cols=21  Identities=33%  Similarity=0.322  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      -|+|.|+.||||||.++.+..
T Consensus       160 liLvtGpTGSGKSTTl~~~l~  180 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQ  180 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEcCCCCCccHHHHHHhh
Confidence            378899999999999999765

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.15  E-value=0.0049  Score=45.32  Aligned_cols=21  Identities=24%  Similarity=0.485  Sum_probs=17.4

Q ss_pred             ceeEEEEEcCCCCChHHHHHHH
Q 029920           15 KEMRILMVGLDNSGKTTIVLKI   36 (185)
Q Consensus        15 ~~~~i~v~G~~~~GKttli~~l   36 (185)
                      +.++ +++|+.|||||+++.++
T Consensus        25 ~~l~-~i~G~NGsGKS~ileAi   45 (427)
T d1w1wa_          25 SNFT-SIIGPNGSGKSNMMDAI   45 (427)
T ss_dssp             CSEE-EEECSTTSSHHHHHHHH
T ss_pred             CCEE-EEECCCCCCHHHHHHHH
Confidence            3454 57799999999999997

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.15  E-value=0.0057  Score=41.63  Aligned_cols=21  Identities=33%  Similarity=0.377  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      .|++.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.12  E-value=0.0056  Score=43.98  Aligned_cols=24  Identities=25%  Similarity=0.278  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhCC
Q 029920           16 EMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      .++|.|=|.-||||||+++.|...
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~~   27 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVAL   27 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC-
T ss_pred             ceEEEEECCcCCCHHHHHHHHHHH
Confidence            468999999999999999999753

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.02  E-value=0.0067  Score=40.77  Aligned_cols=19  Identities=26%  Similarity=0.489  Sum_probs=16.0

Q ss_pred             EEEEEcCCCCChHHHHHHH
Q 029920           18 RILMVGLDNSGKTTIVLKI   36 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l   36 (185)
                      -+.|.|+||+|||+|+..+
T Consensus        28 ~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHH
Confidence            4678899999999998665

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.00  E-value=0.045  Score=37.98  Aligned_cols=82  Identities=21%  Similarity=0.161  Sum_probs=44.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR   97 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   97 (185)
                      -+.+.|++++|||+|+-.++....               -.+.....+||-+.-.........+ ..|-++ ++..   .
T Consensus        62 i~e~~G~~~~GKT~l~l~~~~~~q---------------~~g~~~vyIDtE~~~~~e~a~~~Gv-D~d~il-~~~~---~  121 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAVANAQ---------------AAGGVAAFIDAEHALDPDYAKKLGV-DTDSLL-VSQP---D  121 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHH---------------HTTCEEEEEESSCCCCHHHHHHHTC-CGGGCE-EECC---S
T ss_pred             eEEEecCCCcHHHHHHHHHHHHHh---------------cCCCEEEEEECCccCCHHHHHHhCC-CHHHeE-EecC---C
Confidence            467889999999999877653211               0123456789888433222222222 234333 3433   3


Q ss_pred             cHHHHHHHHHHHHhccccCCCeEEEE
Q 029920           98 RLDDCKMELDNLLKEERLSGASLLIL  123 (185)
Q Consensus        98 s~~~~~~~~~~~~~~~~~~~~~~ivv  123 (185)
                      +.+...+.+..++..    +.+.++|
T Consensus       122 ~~E~~~~~~~~l~~~----~~~~liI  143 (269)
T d1mo6a1         122 TGEQALEIADMLIRS----GALDIVV  143 (269)
T ss_dssp             SHHHHHHHHHHHHHT----TCEEEEE
T ss_pred             CHHHHHHHHHHHHhc----CCCCEEE
Confidence            456655555555443    3445555

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.98  E-value=0.0052  Score=43.56  Aligned_cols=15  Identities=33%  Similarity=0.585  Sum_probs=13.1

Q ss_pred             EEEEcCCCCChHHHH
Q 029920           19 ILMVGLDNSGKTTIV   33 (185)
Q Consensus        19 i~v~G~~~~GKttli   33 (185)
                      +.|.|+|||||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            788999999999763

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.96  E-value=0.0042  Score=43.66  Aligned_cols=17  Identities=35%  Similarity=0.395  Sum_probs=13.7

Q ss_pred             EEEEcCCCCChHHH-HHH
Q 029920           19 ILMVGLDNSGKTTI-VLK   35 (185)
Q Consensus        19 i~v~G~~~~GKttl-i~~   35 (185)
                      ++|.|+|||||||. +++
T Consensus        17 ~lI~g~aGTGKTt~l~~r   34 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNK   34 (306)
T ss_dssp             EEECCCTTSCHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHH
Confidence            67889999999976 443

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.60  E-value=0.0098  Score=41.28  Aligned_cols=19  Identities=26%  Similarity=0.338  Sum_probs=15.9

Q ss_pred             EEEEcCCCCChHHHHHHHh
Q 029920           19 ILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~   37 (185)
                      +++.|+||+|||+|+..+.
T Consensus        38 ~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5788999999999976653

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.38  E-value=0.012  Score=40.75  Aligned_cols=19  Identities=21%  Similarity=0.384  Sum_probs=16.0

Q ss_pred             EEEEcCCCCChHHHHHHHh
Q 029920           19 ILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~   37 (185)
                      +++.|++|+|||+|+-.++
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5689999999999987653

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.23  E-value=0.014  Score=40.92  Aligned_cols=21  Identities=33%  Similarity=0.441  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      |++++|++|+|||+|+..+..
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHH
Confidence            899999999999999988764

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=94.19  E-value=0.055  Score=37.51  Aligned_cols=75  Identities=19%  Similarity=0.121  Sum_probs=41.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc
Q 029920           18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR   97 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   97 (185)
                      -+.+.|++++|||+|+..++.....               .+.....+||-+.-.........+ ..|-++ ++..   .
T Consensus        59 itei~G~~~sGKT~l~l~~~~~aqk---------------~g~~v~yiDtE~~~~~~~a~~~Gv-d~d~i~-~~~~---~  118 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVAQAQK---------------AGGTCAFIDAEHALDPVYARALGV-NTDELL-VSQP---D  118 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHH---------------TTCCEEEEESSCCCCHHHHHHTTC-CGGGCE-EECC---S
T ss_pred             EEEEecCCccchHHHHHHHHHHHHh---------------CCCEEEEEECCccCCHHHHHHhCC-CchhEE-EEcC---C
Confidence            4678899999999998887653210               122456788877433322222222 234333 3333   4


Q ss_pred             cHHHHHHHHHHHHhc
Q 029920           98 RLDDCKMELDNLLKE  112 (185)
Q Consensus        98 s~~~~~~~~~~~~~~  112 (185)
                      +.+...+.+..++..
T Consensus       119 ~~E~~~~~~~~l~~~  133 (268)
T d1xp8a1         119 NGEQALEIMELLVRS  133 (268)
T ss_dssp             SHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHhc
Confidence            456666666655443

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.08  E-value=0.02  Score=39.83  Aligned_cols=27  Identities=30%  Similarity=0.313  Sum_probs=22.2

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~~   39 (185)
                      ..+.-.+.+.|++++|||+|++.+..-
T Consensus       101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         101 FGKRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             STTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCccEEEEEEcCCCCCHHHHHHHHHHH
Confidence            355667899999999999999987653

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.69  E-value=0.031  Score=36.92  Aligned_cols=34  Identities=24%  Similarity=0.359  Sum_probs=28.2

Q ss_pred             HHHHHhhccCceeEEEEEcCCCCChHHHHHHHhC
Q 029920            5 SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus         5 ~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ..++++-+......+++.|++|+|||+++..+..
T Consensus         4 ~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2           4 ETLKRIIEKSEGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             HHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHH
Confidence            3456666677889999999999999999988764

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.66  E-value=0.018  Score=42.62  Aligned_cols=21  Identities=19%  Similarity=0.474  Sum_probs=17.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHh
Q 029920           17 MRILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~   37 (185)
                      -.++|+|.+|+|||+++..+.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHH
Confidence            358999999999999987664

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.56  E-value=0.02  Score=41.55  Aligned_cols=18  Identities=39%  Similarity=0.410  Sum_probs=15.0

Q ss_pred             EEEEEcCCCCChHHHHHH
Q 029920           18 RILMVGLDNSGKTTIVLK   35 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~   35 (185)
                      -++|.|+||+||||++..
T Consensus       165 ~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             EEEEECCTTSTHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHH
Confidence            578889999999998743

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.55  E-value=0.026  Score=34.13  Aligned_cols=27  Identities=4%  Similarity=0.149  Sum_probs=23.0

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHhC
Q 029920           12 KKEKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        12 ~~~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      +.++-+.|.+-|..|+||+||.++|..
T Consensus         2 r~kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           2 RPKQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GGGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             CCccceEEEEeCCCCCCHHHHHHHHHH
Confidence            356679999999999999999998853

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.44  E-value=0.023  Score=40.45  Aligned_cols=25  Identities=20%  Similarity=0.449  Sum_probs=19.6

Q ss_pred             Ccee-EEEEEcCCCCChHHHHHHHhC
Q 029920           14 EKEM-RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        14 ~~~~-~i~v~G~~~~GKttli~~l~~   38 (185)
                      .++. .++++|++|+|||.+++.|..
T Consensus        50 ~kp~~~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          50 NRPIGSFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             SSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchHHHHHHHHHH
Confidence            3444 567889999999999988754

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.11  E-value=0.24  Score=32.78  Aligned_cols=68  Identities=13%  Similarity=0.083  Sum_probs=45.4

Q ss_pred             CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEE-EEeecCCCCCCC
Q 029920           59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLL-ILANKQDINGAL  133 (185)
Q Consensus        59 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~i-vv~nK~D~~~~~  133 (185)
                      .+.+.++|+|+....  .....+..+|.++++.... ..+...+.+.+..+.    ..+.|++ +|+|+.|..+..
T Consensus       111 ~~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~----~~~~~~~giv~N~~~~~~~~  179 (237)
T d1g3qa_         111 KFDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLK----KAGLAILGFVLNRYGRSDRD  179 (237)
T ss_dssp             GCSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHH----HTTCEEEEEEEEEETSCTTC
T ss_pred             cCCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchhhHHHHHHh----hhhhhhhhhhhcccccccch
Confidence            368999999986543  3344567899999999764 345555555444332    2367766 889999875543

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=92.85  E-value=0.032  Score=38.60  Aligned_cols=20  Identities=35%  Similarity=0.547  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 029920           18 RILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~   37 (185)
                      -+.+.|++++|||||+-.++
T Consensus        56 itei~G~~gsGKTtl~l~~~   75 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVI   75 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHH
Confidence            46788999999999987764

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.35  E-value=0.041  Score=37.67  Aligned_cols=26  Identities=23%  Similarity=0.316  Sum_probs=21.2

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHhC
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~l~~   38 (185)
                      ......|.+.|++|+||+.+++.+..
T Consensus        20 a~~~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          20 SCAECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             TTCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred             hCCCCCEEEECCCCcCHHHHHHHHHH
Confidence            34455689999999999999998853

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.21  E-value=0.048  Score=37.95  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q 029920           18 RILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~~   38 (185)
                      |++++|++|+|||+|+..+..
T Consensus        70 r~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHH
Confidence            799999999999999877753

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=89.72  E-value=0.1  Score=32.23  Aligned_cols=17  Identities=24%  Similarity=0.509  Sum_probs=13.4

Q ss_pred             EEEcCCCCChHH-HHHHH
Q 029920           20 LMVGLDNSGKTT-IVLKI   36 (185)
Q Consensus        20 ~v~G~~~~GKtt-li~~l   36 (185)
                      .++||-.||||| |++++
T Consensus         6 ~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEECSTTSCHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHH
Confidence            467999999999 55554

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=89.11  E-value=0.083  Score=37.27  Aligned_cols=17  Identities=35%  Similarity=0.722  Sum_probs=13.9

Q ss_pred             eeEEEEEcCCCCChHHHH
Q 029920           16 EMRILMVGLDNSGKTTIV   33 (185)
Q Consensus        16 ~~~i~v~G~~~~GKttli   33 (185)
                      ... +++|.+|+|||||-
T Consensus        15 ~~a-lfFGLSGTGKTTLs   31 (313)
T d2olra1          15 DVA-VFFGLSGTGKTTLS   31 (313)
T ss_dssp             CEE-EEECSTTSSHHHHH
T ss_pred             CEE-EEEccCCCCcccce
Confidence            444 68999999999965

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=88.83  E-value=0.14  Score=34.96  Aligned_cols=72  Identities=14%  Similarity=0.117  Sum_probs=40.1

Q ss_pred             eEEEEEEcCCchhh-HHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeE-EEEeecCCCCCC
Q 029920           60 YTLNIWDVGGQRTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL-LILANKQDINGA  132 (185)
Q Consensus        60 ~~~~~~D~~g~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-ivv~nK~D~~~~  132 (185)
                      +.+.++|+|+.... ..........+|.++++.+. +..++.........+.......+.++ -++.|+.+....
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~  189 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANE  189 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCC
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCc
Confidence            67999999874322 22223334567888888766 34455544443333322222234443 478899886553

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=88.77  E-value=0.11  Score=31.54  Aligned_cols=18  Identities=28%  Similarity=0.196  Sum_probs=14.6

Q ss_pred             EEEEcCCCCChHHHHHHH
Q 029920           19 ILMVGLDNSGKTTIVLKI   36 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l   36 (185)
                      .+|.++.|+|||+++-.+
T Consensus        11 ~ll~apTGsGKT~~~~~~   28 (136)
T d1a1va1          11 AHLHAPTGSGKSTKVPAA   28 (136)
T ss_dssp             EEEECCTTSCTTTHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHH
Confidence            467899999999987553

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=88.76  E-value=0.087  Score=37.28  Aligned_cols=15  Identities=40%  Similarity=0.718  Sum_probs=13.0

Q ss_pred             EEEEcCCCCChHHHH
Q 029920           19 ILMVGLDNSGKTTIV   33 (185)
Q Consensus        19 i~v~G~~~~GKttli   33 (185)
                      -+++|.+|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            478899999999964

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.26  E-value=0.15  Score=34.39  Aligned_cols=18  Identities=22%  Similarity=0.486  Sum_probs=16.5

Q ss_pred             EEEEcCCCCChHHHHHHH
Q 029920           19 ILMVGLDNSGKTTIVLKI   36 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l   36 (185)
                      +++-|+..+||||+++++
T Consensus        44 ~iiTGpN~~GKSt~lk~i   61 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQT   61 (234)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHH
Confidence            678899999999999986

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.97  E-value=0.12  Score=36.04  Aligned_cols=22  Identities=32%  Similarity=0.431  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhC
Q 029920           17 MRILMVGLDNSGKTTIVLKING   38 (185)
Q Consensus        17 ~~i~v~G~~~~GKttli~~l~~   38 (185)
                      =|++++|++|+|||+|+..+..
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHHH
Confidence            3789999999999999876543

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.94  E-value=0.11  Score=36.82  Aligned_cols=14  Identities=43%  Similarity=0.788  Sum_probs=12.8

Q ss_pred             EEEcCCCCChHHHH
Q 029920           20 LMVGLDNSGKTTIV   33 (185)
Q Consensus        20 ~v~G~~~~GKttli   33 (185)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (323)
T d1ii2a1          18 VFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEECCTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            68999999999976

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=87.81  E-value=0.17  Score=33.97  Aligned_cols=18  Identities=28%  Similarity=0.562  Sum_probs=16.5

Q ss_pred             EEEEcCCCCChHHHHHHH
Q 029920           19 ILMVGLDNSGKTTIVLKI   36 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l   36 (185)
                      +++-|+..+||||+++++
T Consensus        38 ~iiTGpN~~GKSt~lk~i   55 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQT   55 (224)
T ss_dssp             EEEESCSSSSHHHHHHHH
T ss_pred             EEEECCCccccchhhhhh
Confidence            689999999999999886

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=85.78  E-value=0.15  Score=35.43  Aligned_cols=20  Identities=30%  Similarity=0.468  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 029920           18 RILMVGLDNSGKTTIVLKIN   37 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l~   37 (185)
                      |+.++|++|+|||+|+..+.
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~   88 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTI   88 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHH
T ss_pred             eEeeccCCCCChHHHHHHHH
Confidence            67899999999999986643

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.49  E-value=0.37  Score=31.02  Aligned_cols=21  Identities=33%  Similarity=0.463  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChHHHHHHHhCC
Q 029920           19 ILMVGLDNSGKTTIVLKINGE   39 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l~~~   39 (185)
                      +.|.|...||||.+...+...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            589999999999999998754

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=85.27  E-value=0.3  Score=31.77  Aligned_cols=19  Identities=32%  Similarity=0.508  Sum_probs=15.4

Q ss_pred             EEEEEcCC-CCChHHHHHHH
Q 029920           18 RILMVGLD-NSGKTTIVLKI   36 (185)
Q Consensus        18 ~i~v~G~~-~~GKttli~~l   36 (185)
                      |+.|.|-. |+||||+.-.|
T Consensus         3 ~~~i~gt~~GVGKTtvs~~L   22 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCAL   22 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHH
Confidence            67889985 99999996554

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.71  E-value=0.28  Score=31.61  Aligned_cols=17  Identities=35%  Similarity=0.366  Sum_probs=13.5

Q ss_pred             EEEEEcCCCCChHHHHH
Q 029920           18 RILMVGLDNSGKTTIVL   34 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~   34 (185)
                      +++++++.|+|||.+.-
T Consensus        25 n~lv~~pTGsGKT~i~~   41 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIAM   41 (200)
T ss_dssp             CEEEECCTTSCHHHHHH
T ss_pred             CeEEEeCCCCcHHHHHH
Confidence            46788999999997533

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=84.57  E-value=0.16  Score=30.43  Aligned_cols=16  Identities=25%  Similarity=0.181  Sum_probs=12.8

Q ss_pred             eEEEEEcCCCCChHHH
Q 029920           17 MRILMVGLDNSGKTTI   32 (185)
Q Consensus        17 ~~i~v~G~~~~GKttl   32 (185)
                      -++++.+++|+|||..
T Consensus         8 ~~~il~~~tGsGKT~~   23 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRR   23 (140)
T ss_dssp             CEEEECCCTTSSTTTT
T ss_pred             CcEEEEcCCCCChhHH
Confidence            4567889999999944

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=82.50  E-value=0.57  Score=31.43  Aligned_cols=23  Identities=26%  Similarity=0.354  Sum_probs=18.6

Q ss_pred             cCceeEEEEEcCCCCChHHHHHH
Q 029920           13 KEKEMRILMVGLDNSGKTTIVLK   35 (185)
Q Consensus        13 ~~~~~~i~v~G~~~~GKttli~~   35 (185)
                      ........+.|+.|||||-+.-.
T Consensus        73 ~~~~~~~LL~GdvGsGKT~V~~~   95 (233)
T d2eyqa3          73 QPLAMDRLVCGDVGFGKTEVAMR   95 (233)
T ss_dssp             SSSCCEEEEECCCCTTTHHHHHH
T ss_pred             ccCccCeEEEcCCCCCcHHHHHH
Confidence            55667789999999999988544

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=81.97  E-value=0.66  Score=31.69  Aligned_cols=19  Identities=26%  Similarity=0.403  Sum_probs=14.9

Q ss_pred             EEEEEcCCCCChHHHHHHH
Q 029920           18 RILMVGLDNSGKTTIVLKI   36 (185)
Q Consensus        18 ~i~v~G~~~~GKttli~~l   36 (185)
                      -|.+.|--|+||||+.-.+
T Consensus        10 ~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1          10 YLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCcChHHHHHHHH
Confidence            4567899999999975554

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=81.95  E-value=0.49  Score=32.54  Aligned_cols=71  Identities=10%  Similarity=0.118  Sum_probs=37.5

Q ss_pred             CeEEEEEEcCCchhhHH-HHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeE-EEEeecCCCC
Q 029920           59 KYTLNIWDVGGQRTIRS-YWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL-LILANKQDIN  130 (185)
Q Consensus        59 ~~~~~~~D~~g~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-ivv~nK~D~~  130 (185)
                      .+.+.++|+|+...... ........+|.++++... +..+.......+..+.......+.++ -++.|+.+..
T Consensus       118 ~~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~-~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~  190 (289)
T d2afhe1         118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD  190 (289)
T ss_dssp             TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT
T ss_pred             cCCeEeeccCCccCHHHHHHHHHhhccceeecccch-hHHHHHHHHHHHHHHHhhhhcccccccceeehhhcch
Confidence            36788999987542221 111222456777766544 33445544444444433323334554 3788998753

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=81.40  E-value=0.96  Score=30.61  Aligned_cols=18  Identities=39%  Similarity=0.649  Sum_probs=13.6

Q ss_pred             EEEEcCCCCChHHHHHHH
Q 029920           19 ILMVGLDNSGKTTIVLKI   36 (185)
Q Consensus        19 i~v~G~~~~GKttli~~l   36 (185)
                      |++.|.-|+||||+.-.|
T Consensus        23 ii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          23 IMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            455699999999985443

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.31  E-value=0.15  Score=33.23  Aligned_cols=16  Identities=25%  Similarity=0.395  Sum_probs=13.9

Q ss_pred             EEEEEcCCCCChHHHH
Q 029920           18 RILMVGLDNSGKTTIV   33 (185)
Q Consensus        18 ~i~v~G~~~~GKttli   33 (185)
                      ++++.+++|+|||+..
T Consensus        42 ~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          42 NLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             CEEEECSSHHHHHHHH
T ss_pred             CEEEEcCCCCchhHHH
Confidence            5889999999999763